Query 003747
Match_columns 798
No_of_seqs 555 out of 3009
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 02:46:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wb9_A DNA mismatch repair pro 100.0 7.9E-61 2.7E-65 574.4 32.2 474 41-595 261-794 (800)
2 3thx_B DNA mismatch repair pro 100.0 5.9E-55 2E-59 528.2 44.4 474 43-594 315-874 (918)
3 1ewq_A DNA mismatch repair pro 100.0 2E-55 6.9E-60 525.1 37.9 471 40-596 243-761 (765)
4 3thx_A DNA mismatch repair pro 100.0 2.7E-51 9.2E-56 497.5 38.4 479 42-596 295-850 (934)
5 2o8b_B DNA mismatch repair pro 100.0 1.7E-49 5.9E-54 486.7 34.2 482 43-596 391-984 (1022)
6 2pcj_A ABC transporter, lipopr 99.9 3.7E-22 1.3E-26 206.0 13.0 156 396-554 16-221 (224)
7 3tif_A Uncharacterized ABC tra 99.9 1E-21 3.5E-26 204.2 14.2 155 397-554 18-227 (235)
8 3gfo_A Cobalt import ATP-bindi 99.9 9.6E-22 3.3E-26 209.2 13.2 155 397-554 21-226 (275)
9 4g1u_C Hemin import ATP-bindin 99.9 1.2E-21 4E-26 207.5 12.4 157 395-554 22-230 (266)
10 1b0u_A Histidine permease; ABC 99.9 2.2E-21 7.7E-26 204.8 13.9 156 396-554 18-235 (262)
11 1vpl_A ABC transporter, ATP-bi 99.9 2.8E-21 9.4E-26 203.6 14.3 156 396-554 27-228 (256)
12 3fvq_A Fe(3+) IONS import ATP- 99.9 3E-21 1E-25 212.4 14.5 157 396-554 16-221 (359)
13 2olj_A Amino acid ABC transpor 99.8 3.5E-21 1.2E-25 203.6 14.4 157 396-554 36-241 (263)
14 1ji0_A ABC transporter; ATP bi 99.8 3E-21 1E-25 201.3 12.5 156 396-554 18-221 (240)
15 1g6h_A High-affinity branched- 99.8 2.7E-21 9.3E-26 203.5 11.6 155 396-553 19-234 (257)
16 3tui_C Methionine import ATP-b 99.8 4.3E-21 1.5E-25 211.4 13.7 155 397-554 41-246 (366)
17 3rlf_A Maltose/maltodextrin im 99.8 9E-21 3.1E-25 209.9 13.4 155 396-554 15-216 (381)
18 2nq2_C Hypothetical ABC transp 99.8 1.3E-20 4.5E-25 198.1 13.9 154 396-553 17-209 (253)
19 1z47_A CYSA, putative ABC-tran 99.8 1.5E-20 5.1E-25 206.6 14.6 155 396-553 27-227 (355)
20 2yyz_A Sugar ABC transporter, 99.8 2E-20 6.8E-25 206.0 14.9 156 396-554 15-216 (359)
21 2yz2_A Putative ABC transporte 99.8 1.4E-20 4.6E-25 199.2 12.6 155 397-554 20-220 (266)
22 2ff7_A Alpha-hemolysin translo 99.8 1.7E-20 5.7E-25 196.5 12.8 155 396-554 21-225 (247)
23 2qi9_C Vitamin B12 import ATP- 99.8 1.4E-20 4.8E-25 197.5 12.2 153 398-554 14-215 (249)
24 2onk_A Molybdate/tungstate ABC 99.8 2E-20 6.9E-25 195.2 12.9 152 399-554 14-209 (240)
25 2ihy_A ABC transporter, ATP-bi 99.8 2E-20 6.7E-25 199.5 12.7 157 396-554 33-245 (279)
26 2it1_A 362AA long hypothetical 99.8 2.3E-20 8E-25 205.7 13.4 157 396-554 15-216 (362)
27 2ixe_A Antigen peptide transpo 99.8 1.3E-20 4.5E-25 199.9 10.9 155 397-554 32-238 (271)
28 2d2e_A SUFC protein; ABC-ATPas 99.8 1.6E-20 5.5E-25 196.8 10.8 156 396-553 15-225 (250)
29 1g29_1 MALK, maltose transport 99.8 2.8E-20 9.6E-25 205.8 13.1 156 396-554 15-222 (372)
30 1oxx_K GLCV, glucose, ABC tran 99.8 2.2E-20 7.7E-25 205.3 12.2 153 399-553 20-222 (353)
31 1v43_A Sugar-binding transport 99.8 3E-20 1E-24 205.5 13.2 156 396-554 23-224 (372)
32 3d31_A Sulfate/molybdate ABC t 99.8 3.2E-20 1.1E-24 203.6 13.4 151 399-553 15-209 (348)
33 2pze_A Cystic fibrosis transme 99.8 1.2E-20 4.1E-25 195.3 8.5 156 396-554 20-211 (229)
34 2zu0_C Probable ATP-dependent 99.8 3.1E-20 1E-24 196.7 10.6 157 396-554 32-247 (267)
35 1mv5_A LMRA, multidrug resista 99.8 1.7E-20 6E-25 195.7 7.0 153 396-552 14-217 (243)
36 1sgw_A Putative ABC transporte 99.8 4.8E-20 1.6E-24 189.3 9.5 143 398-543 23-204 (214)
37 2pjz_A Hypothetical protein ST 99.8 8.6E-20 3E-24 193.0 11.7 150 397-554 18-208 (263)
38 2cbz_A Multidrug resistance-as 99.8 8E-20 2.7E-24 190.2 9.3 154 397-553 18-209 (237)
39 2ghi_A Transport protein; mult 99.8 1.3E-19 4.4E-24 191.2 10.7 152 397-553 33-234 (260)
40 2bbs_A Cystic fibrosis transme 99.8 8E-20 2.7E-24 195.9 7.0 154 397-553 51-239 (290)
41 3nh6_A ATP-binding cassette SU 99.8 4.6E-19 1.6E-23 191.3 11.9 156 395-554 65-270 (306)
42 3gd7_A Fusion complex of cysti 99.8 6.8E-19 2.3E-23 195.8 10.2 153 396-554 33-235 (390)
43 1yqt_A RNAse L inhibitor; ATP- 99.7 9.8E-18 3.4E-22 193.9 12.8 146 398-547 36-233 (538)
44 3ozx_A RNAse L inhibitor; ATP 99.7 1.3E-17 4.3E-22 192.9 12.1 146 398-547 14-212 (538)
45 3ozx_A RNAse L inhibitor; ATP 99.7 1.3E-17 4.3E-22 192.9 11.9 141 404-547 288-461 (538)
46 3ux8_A Excinuclease ABC, A sub 99.7 1.2E-17 4.2E-22 197.7 11.6 85 467-553 197-290 (670)
47 3j16_B RLI1P; ribosome recycli 99.7 1E-17 3.5E-22 196.0 10.4 151 399-552 362-550 (608)
48 3bk7_A ABC transporter ATP-bin 99.7 2.6E-17 8.9E-22 192.7 13.0 146 398-547 106-303 (607)
49 1yqt_A RNAse L inhibitor; ATP- 99.7 3.5E-17 1.2E-21 189.3 13.5 145 400-547 302-477 (538)
50 2yl4_A ATP-binding cassette SU 99.7 4.3E-17 1.5E-21 190.6 13.7 155 397-554 357-563 (595)
51 3b5x_A Lipid A export ATP-bind 99.7 4.1E-17 1.4E-21 190.3 13.0 153 397-554 356-560 (582)
52 3bk7_A ABC transporter ATP-bin 99.7 4E-17 1.4E-21 191.2 12.9 146 399-547 371-547 (607)
53 3b60_A Lipid A export ATP-bind 99.7 4.2E-17 1.4E-21 190.2 13.1 154 397-554 356-560 (582)
54 4a82_A Cystic fibrosis transme 99.7 4.6E-17 1.6E-21 189.7 13.2 155 396-554 353-557 (578)
55 3qf4_B Uncharacterized ABC tra 99.7 4.6E-17 1.6E-21 190.5 13.0 156 395-554 366-571 (598)
56 3qf4_A ABC transporter, ATP-bi 99.7 4.8E-17 1.7E-21 189.9 12.3 154 396-554 355-559 (587)
57 3j16_B RLI1P; ribosome recycli 99.7 3.4E-17 1.1E-21 191.7 10.7 145 399-546 93-295 (608)
58 2iw3_A Elongation factor 3A; a 99.7 5.6E-17 1.9E-21 197.2 12.8 152 395-551 446-624 (986)
59 3ux8_A Excinuclease ABC, A sub 99.7 1.4E-16 4.7E-21 188.7 13.0 85 468-554 539-633 (670)
60 4gp7_A Metallophosphoesterase; 99.7 2.6E-17 9E-22 162.0 3.4 132 402-538 1-164 (171)
61 2iw3_A Elongation factor 3A; a 99.6 1.2E-16 4.3E-21 194.2 8.7 92 457-553 884-979 (986)
62 4aby_A DNA repair protein RECN 99.6 2E-15 6.7E-20 167.8 10.4 109 473-594 296-413 (415)
63 3qf7_A RAD50; ABC-ATPase, ATPa 99.6 1.3E-15 4.5E-20 167.9 7.6 81 469-551 276-363 (365)
64 2vf7_A UVRA2, excinuclease ABC 99.6 6.9E-15 2.4E-19 177.2 13.5 86 467-554 725-820 (842)
65 3pih_A Uvrabc system protein A 99.5 7.9E-15 2.7E-19 178.0 11.0 85 468-554 801-895 (916)
66 2ygr_A Uvrabc system protein A 99.5 1.9E-14 6.5E-19 174.6 13.4 87 466-554 857-953 (993)
67 2r6f_A Excinuclease ABC subuni 99.5 1.5E-14 5E-19 175.1 11.9 87 466-554 839-935 (972)
68 3g5u_A MCG1178, multidrug resi 99.5 2.3E-14 7.9E-19 180.7 12.0 153 397-553 403-605 (1284)
69 3g5u_A MCG1178, multidrug resi 99.5 2E-14 6.9E-19 181.2 10.2 155 397-554 1046-1251(1284)
70 4f4c_A Multidrug resistance pr 99.5 1.2E-13 4.1E-18 174.7 13.3 154 396-554 430-634 (1321)
71 1ye8_A Protein THEP1, hypothet 99.4 4.4E-14 1.5E-18 140.6 5.7 126 411-541 2-152 (178)
72 3b85_A Phosphate starvation-in 99.4 1.8E-14 6.1E-19 147.1 0.6 121 407-537 20-162 (208)
73 1e69_A Chromosome segregation 99.4 3.9E-13 1.3E-17 145.4 10.9 78 470-550 217-301 (322)
74 4f4c_A Multidrug resistance pr 99.4 3E-13 1E-17 171.1 10.7 154 396-554 1091-1297(1321)
75 2ehv_A Hypothetical protein PH 99.4 3.5E-13 1.2E-17 138.0 8.3 59 487-546 133-206 (251)
76 3qkt_A DNA double-strand break 99.4 1E-12 3.5E-17 143.2 11.4 75 470-546 246-327 (339)
77 2npi_A Protein CLP1; CLP1-PCF1 99.4 5.4E-14 1.9E-18 159.7 -0.0 131 402-541 130-313 (460)
78 1znw_A Guanylate kinase, GMP k 99.3 1.1E-13 3.7E-18 139.9 -2.6 58 486-545 138-201 (207)
79 4a74_A DNA repair and recombin 99.3 2E-12 6.7E-17 130.8 5.8 140 407-547 23-199 (231)
80 1cr0_A DNA primase/helicase; R 99.2 8.1E-12 2.8E-16 132.7 7.2 150 397-550 22-237 (296)
81 2w0m_A SSO2452; RECA, SSPF, un 99.2 2.7E-11 9.4E-16 122.0 9.4 61 487-548 119-192 (235)
82 2pt7_A CAG-ALFA; ATPase, prote 99.2 3.6E-12 1.2E-16 138.8 0.4 129 399-549 160-291 (330)
83 1tf7_A KAIC; homohexamer, hexa 99.2 2.1E-11 7.3E-16 140.3 6.7 151 394-547 22-209 (525)
84 2cvh_A DNA repair and recombin 99.1 1.1E-10 3.9E-15 117.1 10.8 125 407-534 18-157 (220)
85 3ec2_A DNA replication protein 99.1 4.5E-11 1.5E-15 117.4 5.9 106 408-533 37-143 (180)
86 1nlf_A Regulatory protein REPA 99.1 5.5E-11 1.9E-15 125.4 6.9 126 407-536 28-184 (279)
87 2eyu_A Twitching motility prot 99.1 3E-11 1E-15 127.4 4.5 124 399-545 16-145 (261)
88 1tf7_A KAIC; homohexamer, hexa 99.1 6.6E-11 2.3E-15 136.3 6.6 136 407-549 279-444 (525)
89 1tq4_A IIGP1, interferon-induc 99.1 3.4E-12 1.2E-16 142.9 -4.9 143 397-543 36-248 (413)
90 3b9q_A Chloroplast SRP recepto 99.0 2.7E-10 9.3E-15 122.5 8.2 119 402-532 92-256 (302)
91 3jvv_A Twitching mobility prot 99.0 2.1E-10 7.3E-15 126.1 7.1 122 407-546 121-244 (356)
92 2og2_A Putative signal recogni 99.0 8.5E-10 2.9E-14 121.5 9.0 118 402-532 149-313 (359)
93 2obl_A ESCN; ATPase, hydrolase 98.9 1.3E-10 4.4E-15 127.5 0.4 145 396-554 58-248 (347)
94 1n0w_A DNA repair protein RAD5 98.9 1.6E-09 5.4E-14 110.4 8.2 126 407-534 22-175 (243)
95 2i3b_A HCR-ntpase, human cance 98.9 8.2E-11 2.8E-15 118.3 -1.3 26 409-434 1-26 (189)
96 2kjq_A DNAA-related protein; s 98.9 2.7E-09 9.2E-14 102.9 8.6 87 408-532 35-124 (149)
97 1pzn_A RAD51, DNA repair and r 98.9 1.6E-09 5.5E-14 118.7 7.3 126 407-534 129-287 (349)
98 1f2t_B RAD50 ABC-ATPase; DNA d 98.9 2.4E-09 8.2E-14 103.6 7.4 77 467-545 52-135 (148)
99 2jeo_A Uridine-cytidine kinase 98.8 2.5E-10 8.4E-15 118.3 -0.9 38 395-432 10-48 (245)
100 2dpy_A FLII, flagellum-specifi 98.8 8.1E-10 2.8E-14 124.7 -0.2 145 396-554 144-337 (438)
101 3asz_A Uridine kinase; cytidin 98.7 2E-11 6.8E-16 122.7 -12.4 26 407-432 4-29 (211)
102 1z6g_A Guanylate kinase; struc 98.7 6.1E-10 2.1E-14 113.7 -2.2 35 399-433 12-47 (218)
103 3aez_A Pantothenate kinase; tr 98.7 4.7E-10 1.6E-14 121.2 -4.0 27 407-433 88-114 (312)
104 3sop_A Neuronal-specific septi 98.7 2.4E-09 8.1E-14 113.4 1.2 25 411-435 4-28 (270)
105 2v9p_A Replication protein E1; 98.7 1.5E-10 5.1E-15 124.8 -8.4 129 398-553 114-258 (305)
106 2ewv_A Twitching motility prot 98.7 1.5E-08 5E-13 112.0 6.8 116 407-544 134-255 (372)
107 3pih_A Uvrabc system protein A 98.7 2.6E-08 8.8E-13 121.3 8.7 97 456-554 447-553 (916)
108 3szr_A Interferon-induced GTP- 98.6 1.8E-09 6.1E-14 126.7 -2.3 49 487-536 144-199 (608)
109 1s96_A Guanylate kinase, GMP k 98.6 1.2E-08 4.2E-13 104.6 3.7 27 407-433 14-40 (219)
110 2r6f_A Excinuclease ABC subuni 98.6 5.3E-08 1.8E-12 118.3 9.1 96 457-554 488-593 (972)
111 2ygr_A Uvrabc system protein A 98.6 6.1E-08 2.1E-12 118.1 8.7 96 457-554 505-610 (993)
112 2vf7_A UVRA2, excinuclease ABC 98.6 8.2E-08 2.8E-12 116.0 9.6 95 457-553 363-467 (842)
113 1lw7_A Transcriptional regulat 98.5 2.3E-08 7.7E-13 109.8 3.2 56 487-543 275-339 (365)
114 3lda_A DNA repair protein RAD5 98.5 1.1E-07 3.8E-12 106.0 8.8 125 407-532 176-327 (400)
115 1rj9_A FTSY, signal recognitio 98.5 1.5E-07 5.2E-12 101.2 7.8 27 407-433 100-126 (304)
116 2dr3_A UPF0273 protein PH0284; 98.5 6.5E-07 2.2E-11 91.0 11.0 46 488-534 127-174 (247)
117 2qnr_A Septin-2, protein NEDD5 98.4 2E-07 6.8E-12 100.0 5.4 32 396-432 10-41 (301)
118 4ad8_A DNA repair protein RECN 98.4 4.8E-07 1.7E-11 103.9 8.6 116 470-594 394-515 (517)
119 1sxj_E Activator 1 40 kDa subu 98.4 4E-07 1.4E-11 98.2 7.3 44 487-534 132-175 (354)
120 2qag_C Septin-7; cell cycle, c 98.3 8.5E-08 2.9E-12 107.6 0.9 33 397-434 24-56 (418)
121 2px0_A Flagellar biosynthesis 98.3 5.5E-07 1.9E-11 96.5 6.6 134 406-552 102-246 (296)
122 3kta_B Chromosome segregation 98.2 1.4E-06 4.8E-11 86.3 7.6 73 470-545 62-139 (173)
123 2qag_B Septin-6, protein NEDD5 98.2 2.7E-07 9.2E-12 103.6 1.9 46 486-532 173-218 (427)
124 2zr9_A Protein RECA, recombina 98.2 4.6E-06 1.6E-10 91.4 10.9 121 407-533 59-198 (349)
125 2gza_A Type IV secretion syste 98.1 3.4E-07 1.2E-11 100.6 0.3 132 399-545 164-299 (361)
126 3e70_C DPA, signal recognition 98.1 2.8E-06 9.5E-11 92.4 6.5 27 407-433 127-153 (328)
127 1htw_A HI0065; nucleotide-bind 98.1 3.1E-07 1.1E-11 89.5 -1.8 37 397-433 20-57 (158)
128 2bbw_A Adenylate kinase 4, AK4 98.0 9.2E-07 3.1E-11 91.2 0.1 23 408-430 26-48 (246)
129 1w1w_A Structural maintenance 98.0 6.9E-06 2.3E-10 92.0 6.4 75 470-546 331-410 (430)
130 2yhs_A FTSY, cell division pro 97.9 1.2E-05 4.1E-10 91.7 8.1 34 400-433 283-317 (503)
131 3auy_A DNA double-strand break 97.9 1.2E-05 3.9E-10 88.5 7.5 58 486-546 301-359 (371)
132 1fnn_A CDC6P, cell division co 97.8 2.9E-05 1E-09 84.0 8.1 122 411-537 46-173 (389)
133 1udx_A The GTP-binding protein 97.8 1E-05 3.6E-10 90.6 4.6 123 401-532 148-308 (416)
134 1pui_A ENGB, probable GTP-bind 97.8 9E-06 3.1E-10 80.5 3.5 44 480-524 159-202 (210)
135 1ls1_A Signal recognition part 97.8 1.8E-05 6.1E-10 84.6 6.0 32 401-433 91-122 (295)
136 2o5v_A DNA replication and rep 97.8 2.5E-05 8.5E-10 85.9 6.7 75 472-554 265-349 (359)
137 3tr0_A Guanylate kinase, GMP k 97.7 9.6E-06 3.3E-10 80.3 2.2 26 407-432 5-30 (205)
138 3lnc_A Guanylate kinase, GMP k 97.7 9.7E-06 3.3E-10 82.6 1.6 34 399-432 16-51 (231)
139 2ce7_A Cell division protein F 97.7 0.0001 3.5E-09 84.0 9.8 102 412-536 52-167 (476)
140 2z4s_A Chromosomal replication 97.6 5.1E-05 1.8E-09 85.4 6.9 103 410-533 131-237 (440)
141 2r6a_A DNAB helicase, replicat 97.6 0.00016 5.4E-09 81.6 10.7 28 407-434 201-228 (454)
142 1vma_A Cell division protein F 97.6 3.4E-05 1.1E-09 83.1 4.9 27 407-433 102-128 (306)
143 3hr8_A Protein RECA; alpha and 97.6 0.00017 6E-09 79.1 10.6 26 407-432 59-84 (356)
144 1odf_A YGR205W, hypothetical 3 97.6 8.2E-06 2.8E-10 87.1 -0.3 25 408-432 30-54 (290)
145 1v5w_A DMC1, meiotic recombina 97.6 0.00015 5E-09 79.0 9.1 125 407-533 120-274 (343)
146 2qby_A CDC6 homolog 1, cell di 97.5 1.7E-05 5.8E-10 85.4 1.3 125 408-536 44-176 (386)
147 2ius_A DNA translocase FTSK; n 97.5 9.3E-05 3.2E-09 84.9 7.3 28 402-430 161-188 (512)
148 3c8u_A Fructokinase; YP_612366 97.5 3.2E-05 1.1E-09 77.6 2.7 27 407-433 20-46 (208)
149 3euj_A Chromosome partition pr 97.5 3.8E-05 1.3E-09 87.5 3.4 38 397-435 17-55 (483)
150 3a00_A Guanylate kinase, GMP k 97.5 2.7E-05 9.3E-10 76.8 1.5 25 409-433 1-25 (186)
151 1lvg_A Guanylate kinase, GMP k 97.4 3.8E-05 1.3E-09 76.8 1.5 25 408-432 3-27 (198)
152 1zp6_A Hypothetical protein AT 97.4 5.2E-05 1.8E-09 74.2 2.4 26 407-432 7-32 (191)
153 3bos_A Putative DNA replicatio 97.3 0.00033 1.1E-08 70.1 7.8 23 409-431 52-74 (242)
154 3kta_A Chromosome segregation 97.3 7.7E-05 2.6E-09 72.6 2.9 30 402-432 19-49 (182)
155 1qvr_A CLPB protein; coiled co 97.3 0.0011 3.8E-08 80.5 13.2 22 411-432 193-214 (854)
156 2w58_A DNAI, primosome compone 97.3 9.9E-05 3.4E-09 73.1 3.3 22 410-431 55-76 (202)
157 2z43_A DNA repair and recombin 97.2 0.00042 1.4E-08 74.6 7.4 125 407-533 105-258 (324)
158 2e87_A Hypothetical protein PH 97.2 0.00025 8.5E-09 77.4 5.4 117 409-533 167-292 (357)
159 2xau_A PRE-mRNA-splicing facto 97.2 0.00016 5.4E-09 87.1 4.2 130 408-540 108-260 (773)
160 1kgd_A CASK, peripheral plasma 97.2 0.00011 3.8E-09 72.0 2.1 25 408-432 4-28 (180)
161 3kl4_A SRP54, signal recogniti 97.2 0.00033 1.1E-08 78.8 6.2 26 407-432 95-120 (433)
162 1l8q_A Chromosomal replication 97.2 0.00028 9.7E-09 75.3 5.3 22 410-431 38-59 (324)
163 3b9p_A CG5977-PA, isoform A; A 97.2 0.00092 3.2E-08 70.1 9.0 23 409-431 54-76 (297)
164 4eun_A Thermoresistant glucoki 97.1 0.00013 4.4E-09 72.6 2.1 26 407-432 27-52 (200)
165 2bdt_A BH3686; alpha-beta prot 97.1 0.00012 4E-09 71.8 1.8 23 409-431 2-24 (189)
166 3pxg_A Negative regulator of g 97.1 0.0015 5.1E-08 74.0 10.6 21 412-432 204-224 (468)
167 2j41_A Guanylate kinase; GMP, 97.1 0.00016 5.6E-09 71.3 2.1 27 407-433 4-30 (207)
168 1sq5_A Pantothenate kinase; P- 97.1 0.00019 6.4E-09 76.9 2.5 26 407-432 78-103 (308)
169 3vaa_A Shikimate kinase, SK; s 97.0 0.00019 6.6E-09 71.3 2.0 36 396-431 11-47 (199)
170 2vp4_A Deoxynucleoside kinase; 96.9 0.00033 1.1E-08 71.4 2.9 26 407-432 18-43 (230)
171 2qm8_A GTPase/ATPase; G protei 96.9 0.00012 4.1E-09 79.6 -0.5 36 398-433 43-79 (337)
172 3tau_A Guanylate kinase, GMP k 96.9 0.00028 9.7E-09 70.8 2.2 26 407-432 6-31 (208)
173 1zu4_A FTSY; GTPase, signal re 96.9 0.0018 6.1E-08 70.0 8.5 33 401-433 96-129 (320)
174 1u94_A RECA protein, recombina 96.9 0.0023 8E-08 70.1 9.1 120 408-533 62-200 (356)
175 3uie_A Adenylyl-sulfate kinase 96.8 0.00038 1.3E-08 69.2 2.4 27 407-433 23-49 (200)
176 1njg_A DNA polymerase III subu 96.8 0.0017 5.8E-08 64.1 7.0 22 410-431 46-67 (250)
177 2o5v_A DNA replication and rep 96.8 0.0004 1.4E-08 76.4 2.6 33 400-433 17-50 (359)
178 1jbk_A CLPB protein; beta barr 96.8 0.0038 1.3E-07 59.4 9.3 23 409-431 43-65 (195)
179 1kag_A SKI, shikimate kinase I 96.8 0.00031 1.1E-08 67.5 1.5 24 409-432 4-27 (173)
180 2v1u_A Cell division control p 96.8 0.0005 1.7E-08 74.0 3.1 24 408-431 43-66 (387)
181 1knq_A Gluconate kinase; ALFA/ 96.8 0.00043 1.5E-08 66.8 2.3 26 407-432 6-31 (175)
182 2i1q_A DNA repair and recombin 96.8 0.0016 5.4E-08 69.7 6.9 26 407-432 96-121 (322)
183 1p9r_A General secretion pathw 96.7 0.00051 1.7E-08 77.0 2.5 33 399-432 158-190 (418)
184 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.0007 2.4E-08 64.8 2.9 29 402-432 18-46 (149)
185 2p65_A Hypothetical protein PF 96.7 0.0024 8.1E-08 61.0 6.7 23 409-431 43-65 (187)
186 4e22_A Cytidylate kinase; P-lo 96.7 0.00046 1.6E-08 71.6 1.7 24 407-430 25-48 (252)
187 1rz3_A Hypothetical protein rb 96.6 0.00081 2.8E-08 67.0 2.6 26 407-432 20-45 (201)
188 1nij_A Hypothetical protein YJ 96.5 0.00081 2.8E-08 72.3 2.3 23 410-432 5-27 (318)
189 1qhl_A Protein (cell division 96.5 8.5E-05 2.9E-09 76.6 -5.2 30 402-433 22-51 (227)
190 4a1f_A DNAB helicase, replicat 96.5 0.0021 7.2E-08 70.0 5.5 115 407-532 44-165 (338)
191 3h4m_A Proteasome-activating n 96.5 0.0021 7.1E-08 66.9 5.3 22 410-431 52-73 (285)
192 3cf0_A Transitional endoplasmi 96.5 0.0048 1.6E-07 65.4 8.1 24 408-431 48-71 (301)
193 1ypw_A Transitional endoplasmi 96.4 0.0035 1.2E-07 75.8 7.5 25 408-432 237-261 (806)
194 3lxx_A GTPase IMAP family memb 96.4 0.0033 1.1E-07 63.9 6.2 46 486-532 109-155 (239)
195 1u0l_A Probable GTPase ENGC; p 96.4 0.00092 3.1E-08 71.3 2.1 24 408-431 168-191 (301)
196 2oap_1 GSPE-2, type II secreti 96.4 0.00089 3.1E-08 76.9 1.8 35 399-433 249-284 (511)
197 1lv7_A FTSH; alpha/beta domain 96.4 0.0042 1.4E-07 63.8 6.7 21 412-432 48-68 (257)
198 3ney_A 55 kDa erythrocyte memb 96.4 0.0011 3.7E-08 66.9 2.1 24 408-431 18-41 (197)
199 2b8t_A Thymidine kinase; deoxy 96.3 0.0028 9.7E-08 65.0 5.2 112 407-533 10-126 (223)
200 4fcw_A Chaperone protein CLPB; 96.3 0.0089 3E-07 62.7 9.0 24 410-433 48-71 (311)
201 1w1w_A Structural maintenance 96.3 0.0012 4.2E-08 73.7 2.5 30 403-433 21-50 (430)
202 2qgz_A Helicase loader, putati 96.3 0.0015 5.3E-08 69.9 3.1 23 409-431 152-174 (308)
203 3nwj_A ATSK2; P loop, shikimat 96.3 0.0003 1E-08 73.5 -2.5 36 396-431 31-70 (250)
204 2yv5_A YJEQ protein; hydrolase 96.3 0.0012 4.1E-08 70.6 2.0 23 408-430 164-186 (302)
205 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.012 4.1E-07 63.7 9.8 25 407-431 121-145 (331)
206 3tqc_A Pantothenate kinase; bi 96.3 0.0012 4.1E-08 71.5 1.9 23 410-432 93-115 (321)
207 1jjv_A Dephospho-COA kinase; P 96.3 0.0012 4.2E-08 65.4 1.8 21 411-431 4-24 (206)
208 2x8a_A Nuclear valosin-contain 96.3 0.00051 1.7E-08 72.4 -1.1 33 398-432 34-67 (274)
209 3t15_A Ribulose bisphosphate c 96.3 0.0056 1.9E-07 64.9 7.0 22 410-431 37-58 (293)
210 2dy1_A Elongation factor G; tr 96.2 0.0045 1.5E-07 73.3 6.8 42 487-535 97-138 (665)
211 3qks_A DNA double-strand break 96.2 0.0019 6.5E-08 64.9 2.9 28 402-431 18-45 (203)
212 2rcn_A Probable GTPase ENGC; Y 96.2 0.0013 4.5E-08 72.2 1.8 24 408-431 214-237 (358)
213 3llm_A ATP-dependent RNA helic 96.2 0.0041 1.4E-07 63.3 5.4 23 408-430 75-97 (235)
214 1svm_A Large T antigen; AAA+ f 96.2 0.00064 2.2E-08 75.2 -0.8 34 398-431 157-191 (377)
215 2if2_A Dephospho-COA kinase; a 96.2 0.0016 5.4E-08 64.4 1.9 21 411-431 3-23 (204)
216 2qt1_A Nicotinamide riboside k 96.1 0.0021 7.1E-08 63.9 2.5 25 407-431 19-43 (207)
217 3k1j_A LON protease, ATP-depen 96.1 0.00065 2.2E-08 79.4 -1.5 38 396-433 46-84 (604)
218 1cke_A CK, MSSA, protein (cyti 96.1 0.0018 6.1E-08 64.9 1.9 22 410-431 6-27 (227)
219 2q6t_A DNAB replication FORK h 96.1 0.018 6.1E-07 64.6 10.3 27 407-433 198-224 (444)
220 1xp8_A RECA protein, recombina 96.0 0.021 7E-07 62.8 10.1 25 407-431 72-96 (366)
221 1t9h_A YLOQ, probable GTPase E 96.0 0.001 3.4E-08 71.6 -0.5 24 408-431 172-195 (307)
222 2pez_A Bifunctional 3'-phospho 95.9 0.0025 8.6E-08 61.8 2.2 25 408-432 4-28 (179)
223 2f1r_A Molybdopterin-guanine d 95.9 0.0014 4.7E-08 64.5 0.0 23 410-432 3-25 (171)
224 1ixz_A ATP-dependent metallopr 95.9 0.001 3.5E-08 68.3 -1.0 32 399-432 40-72 (254)
225 1oix_A RAS-related protein RAB 95.9 0.0026 8.9E-08 62.3 1.9 23 411-433 31-53 (191)
226 3bh0_A DNAB-like replicative h 95.8 0.042 1.4E-06 58.8 11.3 26 407-432 66-91 (315)
227 2f9l_A RAB11B, member RAS onco 95.8 0.0027 9.2E-08 62.4 1.6 21 412-432 8-28 (199)
228 3d8b_A Fidgetin-like protein 1 95.7 0.023 8E-07 61.7 9.0 23 409-431 117-139 (357)
229 1iy2_A ATP-dependent metallopr 95.7 0.0013 4.5E-08 68.7 -1.0 32 399-432 64-96 (278)
230 2dhr_A FTSH; AAA+ protein, hex 95.7 0.019 6.4E-07 65.7 8.4 21 412-432 67-87 (499)
231 3auy_A DNA double-strand break 95.6 0.0054 1.8E-07 67.2 3.6 30 403-432 19-48 (371)
232 2qor_A Guanylate kinase; phosp 95.6 0.0033 1.1E-07 62.5 1.7 25 407-431 10-34 (204)
233 3dm5_A SRP54, signal recogniti 95.6 0.011 3.9E-07 66.5 6.1 24 408-431 99-122 (443)
234 2qz4_A Paraplegin; AAA+, SPG7, 95.6 0.039 1.3E-06 56.1 9.6 22 410-431 40-61 (262)
235 2orw_A Thymidine kinase; TMTK, 95.6 0.016 5.3E-07 57.3 6.2 21 409-429 3-23 (184)
236 3pxi_A Negative regulator of g 95.5 0.03 1E-06 66.9 9.9 22 411-432 203-224 (758)
237 3m6a_A ATP-dependent protease 95.5 0.0067 2.3E-07 70.0 4.1 26 408-433 107-132 (543)
238 2orv_A Thymidine kinase; TP4A 95.5 0.014 4.8E-07 60.3 6.0 110 407-535 17-128 (234)
239 1in4_A RUVB, holliday junction 95.5 0.0035 1.2E-07 67.6 1.4 23 410-432 52-74 (334)
240 3co5_A Putative two-component 95.5 0.044 1.5E-06 51.4 8.8 20 412-431 30-49 (143)
241 3cr8_A Sulfate adenylyltranfer 95.5 0.0034 1.2E-07 72.8 1.2 27 407-433 367-393 (552)
242 3t61_A Gluconokinase; PSI-biol 95.4 0.0041 1.4E-07 61.5 1.3 23 409-431 18-40 (202)
243 4ad8_A DNA repair protein RECN 95.4 0.0029 9.9E-08 72.4 0.3 32 400-432 51-83 (517)
244 1sxj_D Activator 1 41 kDa subu 95.4 0.009 3.1E-07 63.6 4.0 21 412-432 61-81 (353)
245 1y63_A LMAJ004144AAA protein; 95.4 0.0058 2E-07 59.8 2.3 29 403-431 3-32 (184)
246 4b4t_L 26S protease subunit RP 95.3 0.043 1.5E-06 61.8 9.6 22 410-431 216-237 (437)
247 2ffh_A Protein (FFH); SRP54, s 95.3 0.013 4.5E-07 65.7 5.3 31 402-433 92-122 (425)
248 3eie_A Vacuolar protein sortin 95.3 0.026 8.8E-07 60.3 7.3 22 410-431 52-73 (322)
249 2r8r_A Sensor protein; KDPD, P 95.3 0.015 5E-07 59.9 5.0 49 488-537 83-131 (228)
250 3io5_A Recombination and repai 95.2 0.044 1.5E-06 59.3 8.8 120 408-534 28-173 (333)
251 3cm0_A Adenylate kinase; ATP-b 95.2 0.0061 2.1E-07 59.0 1.9 23 408-430 3-25 (186)
252 1w5s_A Origin recognition comp 95.2 0.025 8.5E-07 61.5 7.0 23 409-431 50-74 (412)
253 4eaq_A DTMP kinase, thymidylat 95.2 0.007 2.4E-07 61.9 2.3 25 407-431 24-48 (229)
254 2yvu_A Probable adenylyl-sulfa 95.1 0.0075 2.6E-07 58.7 2.3 25 407-431 11-35 (186)
255 3syl_A Protein CBBX; photosynt 95.1 0.037 1.3E-06 57.9 7.6 24 409-432 67-90 (309)
256 4b4t_K 26S protease regulatory 95.1 0.075 2.6E-06 59.6 10.4 22 410-431 207-228 (428)
257 3pfi_A Holliday junction ATP-d 95.0 0.049 1.7E-06 57.9 8.6 21 411-431 57-77 (338)
258 3kb2_A SPBC2 prophage-derived 95.0 0.0071 2.4E-07 57.4 1.8 20 411-430 3-22 (173)
259 1xwi_A SKD1 protein; VPS4B, AA 95.0 0.055 1.9E-06 58.0 8.8 22 410-431 46-67 (322)
260 3hu3_A Transitional endoplasmi 95.0 0.025 8.6E-07 64.5 6.4 22 410-431 239-260 (489)
261 2chg_A Replication factor C sm 94.9 0.082 2.8E-06 51.3 9.0 20 412-431 41-60 (226)
262 3cmw_A Protein RECA, recombina 94.9 0.063 2.1E-06 69.4 10.2 26 407-432 730-755 (1706)
263 1d2n_A N-ethylmaleimide-sensit 94.9 0.031 1E-06 57.9 6.2 22 410-431 65-86 (272)
264 1sxj_A Activator 1 95 kDa subu 94.8 0.02 6.9E-07 65.4 5.1 23 409-431 77-99 (516)
265 3vfd_A Spastin; ATPase, microt 94.8 0.04 1.4E-06 60.4 7.3 23 409-431 148-170 (389)
266 2zts_A Putative uncharacterize 94.8 0.077 2.6E-06 53.2 8.7 46 487-533 133-182 (251)
267 1q3t_A Cytidylate kinase; nucl 94.7 0.011 3.7E-07 60.2 2.2 25 407-431 14-38 (236)
268 2qp9_X Vacuolar protein sortin 94.7 0.054 1.8E-06 58.9 7.9 22 410-431 85-106 (355)
269 1ni3_A YCHF GTPase, YCHF GTP-b 94.7 0.011 3.8E-07 65.6 2.3 56 489-548 139-199 (392)
270 1m7g_A Adenylylsulfate kinase; 94.7 0.012 4.1E-07 58.8 2.3 25 407-431 23-47 (211)
271 2www_A Methylmalonic aciduria 94.6 0.012 4.1E-07 64.1 2.4 25 408-432 73-97 (349)
272 3lw7_A Adenylate kinase relate 94.6 0.011 3.8E-07 55.7 1.9 20 410-429 2-21 (179)
273 1qhx_A CPT, protein (chloramph 94.6 0.011 3.9E-07 56.6 1.9 22 409-430 3-24 (178)
274 3bgw_A DNAB-like replicative h 94.5 0.17 6E-06 56.8 11.8 26 407-432 195-220 (444)
275 1xx6_A Thymidine kinase; NESG, 94.5 0.031 1.1E-06 55.8 5.0 110 407-533 6-118 (191)
276 3n70_A Transport activator; si 94.5 0.031 1.1E-06 52.5 4.7 21 411-431 26-46 (145)
277 1vht_A Dephospho-COA kinase; s 94.4 0.014 4.8E-07 58.3 2.3 23 409-431 4-26 (218)
278 1ex7_A Guanylate kinase; subst 94.4 0.011 3.8E-07 58.9 1.4 20 410-429 2-21 (186)
279 4b4t_J 26S protease regulatory 94.4 0.07 2.4E-06 59.4 8.0 20 412-431 185-204 (405)
280 2ze6_A Isopentenyl transferase 94.4 0.013 4.4E-07 60.7 2.0 22 410-431 2-23 (253)
281 1kht_A Adenylate kinase; phosp 94.3 0.014 4.7E-07 56.4 1.9 22 409-430 3-24 (192)
282 1np6_A Molybdopterin-guanine d 94.3 0.014 4.8E-07 57.4 1.9 22 410-431 7-28 (174)
283 2rhm_A Putative kinase; P-loop 94.3 0.017 5.8E-07 56.0 2.4 23 408-430 4-26 (193)
284 4b4t_M 26S protease regulatory 94.3 0.067 2.3E-06 60.1 7.5 22 410-431 216-237 (434)
285 1jr3_A DNA polymerase III subu 94.2 0.042 1.4E-06 58.8 5.7 22 410-431 39-60 (373)
286 2wji_A Ferrous iron transport 94.1 0.016 5.4E-07 55.0 1.8 21 411-431 5-25 (165)
287 1uf9_A TT1252 protein; P-loop, 94.1 0.019 6.4E-07 56.1 2.4 24 408-431 7-30 (203)
288 1ly1_A Polynucleotide kinase; 94.1 0.017 5.9E-07 55.1 2.0 22 410-431 3-24 (181)
289 2p5t_B PEZT; postsegregational 94.1 0.016 5.4E-07 59.8 1.8 25 407-431 30-54 (253)
290 2zan_A Vacuolar protein sortin 94.0 0.032 1.1E-06 62.6 4.4 22 410-431 168-189 (444)
291 1via_A Shikimate kinase; struc 94.0 0.014 4.9E-07 56.1 1.4 20 411-430 6-25 (175)
292 1w4r_A Thymidine kinase; type 94.0 0.012 4.2E-07 59.2 0.8 109 407-536 18-130 (195)
293 2iut_A DNA translocase FTSK; n 94.0 0.06 2E-06 62.5 6.5 21 410-430 215-235 (574)
294 2p67_A LAO/AO transport system 93.9 0.021 7.3E-07 61.7 2.5 26 407-432 54-79 (341)
295 2jaq_A Deoxyguanosine kinase; 93.9 0.018 6.2E-07 56.1 1.8 21 411-431 2-22 (205)
296 2gj8_A MNME, tRNA modification 93.9 0.021 7.3E-07 54.7 2.2 23 409-431 4-26 (172)
297 1gvn_B Zeta; postsegregational 93.9 0.023 8E-07 60.0 2.7 24 407-430 31-54 (287)
298 2wjg_A FEOB, ferrous iron tran 93.8 0.018 6.2E-07 55.2 1.6 21 411-431 9-29 (188)
299 1ega_A Protein (GTP-binding pr 93.8 0.019 6.4E-07 61.1 1.8 24 409-432 8-31 (301)
300 3cmw_A Protein RECA, recombina 93.8 0.14 4.8E-06 66.2 10.0 120 407-532 381-519 (1706)
301 3t34_A Dynamin-related protein 93.7 0.12 4E-06 56.1 8.0 35 398-434 25-59 (360)
302 4b4t_I 26S protease regulatory 93.7 0.11 3.8E-06 58.2 7.9 22 410-431 217-238 (437)
303 1gtv_A TMK, thymidylate kinase 93.7 0.012 4.3E-07 58.0 0.1 20 411-430 2-21 (214)
304 1hqc_A RUVB; extended AAA-ATPa 93.6 0.13 4.5E-06 53.9 8.1 22 410-431 39-60 (324)
305 1ypw_A Transitional endoplasmi 93.6 0.014 4.8E-07 70.6 0.5 26 408-433 510-535 (806)
306 1q57_A DNA primase/helicase; d 93.6 0.14 4.8E-06 58.1 8.7 25 407-431 240-264 (503)
307 3iij_A Coilin-interacting nucl 93.5 0.021 7.3E-07 55.1 1.5 22 409-430 11-32 (180)
308 2zej_A Dardarin, leucine-rich 93.5 0.022 7.6E-07 55.0 1.6 20 412-431 5-24 (184)
309 3uk6_A RUVB-like 2; hexameric 93.5 0.17 5.7E-06 54.3 8.7 24 409-432 70-93 (368)
310 2c95_A Adenylate kinase 1; tra 93.4 0.029 1E-06 54.4 2.3 23 408-430 8-30 (196)
311 1tev_A UMP-CMP kinase; ploop, 93.4 0.028 9.6E-07 54.2 2.1 22 409-430 3-24 (196)
312 2v54_A DTMP kinase, thymidylat 93.4 0.029 9.8E-07 54.9 2.1 24 408-431 3-26 (204)
313 1nks_A Adenylate kinase; therm 93.2 0.03 1E-06 54.0 2.0 20 411-430 3-22 (194)
314 3ake_A Cytidylate kinase; CMP 93.2 0.027 9.4E-07 55.2 1.8 21 411-431 4-24 (208)
315 2plr_A DTMP kinase, probable t 93.2 0.031 1.1E-06 54.8 2.2 23 409-431 4-26 (213)
316 3trf_A Shikimate kinase, SK; a 93.2 0.03 1E-06 54.1 1.9 22 409-430 5-26 (185)
317 3e2i_A Thymidine kinase; Zn-bi 93.2 0.11 3.9E-06 53.0 6.2 112 407-535 26-140 (219)
318 3r20_A Cytidylate kinase; stru 93.2 0.028 9.6E-07 58.0 1.8 21 410-430 10-30 (233)
319 1j8m_F SRP54, signal recogniti 93.1 0.029 9.8E-07 59.8 1.9 30 403-432 92-121 (297)
320 2z0h_A DTMP kinase, thymidylat 93.1 0.029 1E-06 54.5 1.8 21 411-431 2-22 (197)
321 2vli_A Antibiotic resistance p 93.1 0.029 9.8E-07 53.9 1.7 22 409-430 5-26 (183)
322 3pvs_A Replication-associated 93.0 0.1 3.5E-06 58.7 6.4 21 411-431 52-72 (447)
323 2wwf_A Thymidilate kinase, put 93.0 0.035 1.2E-06 54.7 2.2 24 408-431 9-32 (212)
324 1nn5_A Similar to deoxythymidy 92.9 0.037 1.3E-06 54.5 2.2 23 408-430 8-30 (215)
325 4b4t_H 26S protease regulatory 92.9 0.13 4.5E-06 58.1 6.8 22 410-431 244-265 (467)
326 3lxw_A GTPase IMAP family memb 92.8 0.042 1.4E-06 56.5 2.6 21 411-431 23-43 (247)
327 2j9r_A Thymidine kinase; TK1, 92.8 0.08 2.8E-06 54.0 4.5 112 407-535 26-140 (214)
328 1g5t_A COB(I)alamin adenosyltr 92.7 0.23 7.9E-06 49.9 7.7 60 481-545 110-177 (196)
329 3cmu_A Protein RECA, recombina 92.7 0.2 6.7E-06 65.8 9.0 24 408-431 1426-1449(2050)
330 1iqp_A RFCS; clamp loader, ext 92.7 0.19 6.4E-06 52.5 7.4 20 412-431 49-68 (327)
331 1m2o_B GTP-binding protein SAR 92.7 0.039 1.3E-06 53.7 2.0 32 399-431 13-45 (190)
332 1qvr_A CLPB protein; coiled co 92.7 0.09 3.1E-06 63.8 5.6 24 410-433 589-612 (854)
333 1ojl_A Transcriptional regulat 92.7 0.084 2.9E-06 56.1 4.7 21 411-431 27-47 (304)
334 1sxj_C Activator 1 40 kDa subu 92.6 0.034 1.2E-06 59.6 1.6 21 412-432 49-69 (340)
335 3u61_B DNA polymerase accessor 92.6 0.13 4.5E-06 54.3 6.0 22 410-431 49-70 (324)
336 1a7j_A Phosphoribulokinase; tr 92.5 0.042 1.4E-06 58.2 2.1 24 408-431 4-27 (290)
337 1qf9_A UMP/CMP kinase, protein 92.5 0.046 1.6E-06 52.6 2.2 21 410-430 7-27 (194)
338 2bwj_A Adenylate kinase 5; pho 92.5 0.044 1.5E-06 53.3 2.0 22 409-430 12-33 (199)
339 1xjc_A MOBB protein homolog; s 92.4 0.044 1.5E-06 53.8 1.9 21 410-430 5-25 (169)
340 3cmu_A Protein RECA, recombina 92.2 0.24 8.3E-06 64.9 8.9 25 407-431 381-405 (2050)
341 3cf2_A TER ATPase, transitiona 92.1 0.23 8E-06 59.9 8.1 22 410-431 239-260 (806)
342 4ag6_A VIRB4 ATPase, type IV s 92.1 0.039 1.3E-06 60.5 1.3 25 408-432 34-58 (392)
343 1e6c_A Shikimate kinase; phosp 92.1 0.042 1.4E-06 52.2 1.3 21 410-430 3-23 (173)
344 2pbr_A DTMP kinase, thymidylat 92.1 0.049 1.7E-06 52.6 1.8 20 411-430 2-21 (195)
345 1ukz_A Uridylate kinase; trans 92.0 0.058 2E-06 52.9 2.3 23 408-430 14-36 (203)
346 1zd8_A GTP:AMP phosphotransfer 91.8 0.058 2E-06 54.3 2.0 22 409-430 7-28 (227)
347 3fb4_A Adenylate kinase; psych 91.8 0.054 1.9E-06 53.7 1.8 20 411-430 2-21 (216)
348 2qen_A Walker-type ATPase; unk 91.7 0.23 7.8E-06 52.2 6.7 21 410-430 32-52 (350)
349 1zak_A Adenylate kinase; ATP:A 91.7 0.056 1.9E-06 54.1 1.8 22 409-430 5-26 (222)
350 1aky_A Adenylate kinase; ATP:A 91.6 0.062 2.1E-06 53.7 2.0 23 408-430 3-25 (220)
351 2pt5_A Shikimate kinase, SK; a 91.6 0.059 2E-06 51.0 1.7 20 411-430 2-21 (168)
352 3a4m_A L-seryl-tRNA(SEC) kinas 91.6 0.065 2.2E-06 55.4 2.2 23 409-431 4-26 (260)
353 2a5y_B CED-4; apoptosis; HET: 91.5 0.38 1.3E-05 55.1 8.7 23 408-430 151-173 (549)
354 2iyv_A Shikimate kinase, SK; t 91.4 0.055 1.9E-06 52.2 1.3 21 410-430 3-23 (184)
355 3dl0_A Adenylate kinase; phosp 91.4 0.064 2.2E-06 53.2 1.8 20 411-430 2-21 (216)
356 1f6b_A SAR1; gtpases, N-termin 91.2 0.034 1.2E-06 54.6 -0.4 32 399-431 15-47 (198)
357 2cdn_A Adenylate kinase; phosp 91.2 0.078 2.7E-06 52.1 2.2 23 408-430 19-41 (201)
358 2qtf_A Protein HFLX, GTP-bindi 91.1 0.066 2.3E-06 58.6 1.8 24 409-432 179-202 (364)
359 3k53_A Ferrous iron transport 91.1 0.069 2.4E-06 55.4 1.7 22 411-432 5-26 (271)
360 2xb4_A Adenylate kinase; ATP-b 91.0 0.072 2.5E-06 53.7 1.8 20 411-430 2-21 (223)
361 1moz_A ARL1, ADP-ribosylation 91.0 0.073 2.5E-06 50.6 1.7 20 411-430 20-39 (183)
362 2ga8_A Hypothetical 39.9 kDa p 90.9 0.069 2.4E-06 58.5 1.7 21 412-432 27-47 (359)
363 1mky_A Probable GTP-binding pr 90.9 0.069 2.4E-06 59.7 1.6 22 411-432 182-203 (439)
364 1uj2_A Uridine-cytidine kinase 90.6 0.082 2.8E-06 54.2 1.8 22 410-431 23-44 (252)
365 2grj_A Dephospho-COA kinase; T 90.6 0.083 2.9E-06 52.6 1.8 24 408-431 11-34 (192)
366 2f6r_A COA synthase, bifunctio 90.6 0.085 2.9E-06 55.4 1.9 22 409-430 75-96 (281)
367 3ld9_A DTMP kinase, thymidylat 90.5 0.35 1.2E-05 49.4 6.3 24 407-430 19-42 (223)
368 1zuh_A Shikimate kinase; alpha 90.4 0.091 3.1E-06 50.0 1.8 21 410-430 8-28 (168)
369 1ltq_A Polynucleotide kinase; 90.4 0.093 3.2E-06 54.9 2.0 22 410-431 3-24 (301)
370 1fzq_A ADP-ribosylation factor 90.3 0.092 3.1E-06 50.5 1.7 21 411-431 18-38 (181)
371 2ged_A SR-beta, signal recogni 90.1 0.094 3.2E-06 50.4 1.6 21 411-431 50-70 (193)
372 3te6_A Regulatory protein SIR3 90.0 0.27 9.1E-06 53.0 5.3 24 408-431 44-67 (318)
373 2qag_A Septin-2, protein NEDD5 90.0 0.079 2.7E-06 57.8 1.1 19 412-430 40-58 (361)
374 3tlx_A Adenylate kinase 2; str 89.9 0.12 4.1E-06 52.9 2.3 22 409-430 29-50 (243)
375 1e4v_A Adenylate kinase; trans 89.8 0.11 3.8E-06 51.7 1.9 19 412-430 3-21 (214)
376 2ce2_X GTPase HRAS; signaling 89.7 0.11 3.8E-06 47.8 1.7 20 412-431 6-25 (166)
377 2lw1_A ABC transporter ATP-bin 89.7 1.6 5.4E-05 38.1 9.0 55 597-651 23-83 (89)
378 1z2a_A RAS-related protein RAB 89.7 0.11 3.7E-06 48.3 1.6 20 412-431 8-27 (168)
379 4edh_A DTMP kinase, thymidylat 89.6 0.13 4.5E-06 52.0 2.3 23 408-430 5-27 (213)
380 3ice_A Transcription terminati 89.5 0.086 3E-06 58.5 0.9 31 402-432 166-197 (422)
381 2dyk_A GTP-binding protein; GT 89.5 0.12 4E-06 47.8 1.6 20 412-431 4-23 (161)
382 2qmh_A HPR kinase/phosphorylas 89.2 0.21 7.1E-06 50.5 3.4 33 398-430 23-55 (205)
383 1kao_A RAP2A; GTP-binding prot 89.2 0.13 4.3E-06 47.6 1.6 19 412-430 6-24 (167)
384 1u8z_A RAS-related protein RAL 89.2 0.13 4.3E-06 47.6 1.6 20 412-431 7-26 (168)
385 3q72_A GTP-binding protein RAD 89.1 0.13 4.5E-06 47.8 1.7 19 412-430 5-23 (166)
386 1ek0_A Protein (GTP-binding pr 89.1 0.13 4.3E-06 47.8 1.6 20 412-431 6-25 (170)
387 1z0j_A RAB-22, RAS-related pro 89.1 0.13 4.4E-06 47.9 1.6 20 412-431 9-28 (170)
388 3v9p_A DTMP kinase, thymidylat 89.0 0.14 4.8E-06 52.5 2.0 23 408-430 24-46 (227)
389 1ky3_A GTP-binding protein YPT 89.0 0.13 4.4E-06 48.4 1.6 20 412-431 11-30 (182)
390 2eqb_B RAB guanine nucleotide 89.0 10 0.00035 33.7 13.5 71 598-675 7-77 (97)
391 2erx_A GTP-binding protein DI- 89.0 0.13 4.5E-06 47.8 1.6 19 412-430 6-24 (172)
392 1g16_A RAS-related protein SEC 89.0 0.14 4.7E-06 47.7 1.7 20 412-431 6-25 (170)
393 1z6t_A APAF-1, apoptotic prote 88.9 0.54 1.8E-05 53.9 7.1 23 408-430 146-168 (591)
394 3zvl_A Bifunctional polynucleo 88.9 0.15 5E-06 56.8 2.3 24 407-430 256-279 (416)
395 3tw8_B RAS-related protein RAB 88.9 0.13 4.6E-06 48.3 1.6 20 412-431 12-31 (181)
396 3be4_A Adenylate kinase; malar 88.8 0.15 5E-06 51.0 1.9 22 409-430 5-26 (217)
397 1z08_A RAS-related protein RAB 88.8 0.14 4.7E-06 47.8 1.6 19 412-430 9-27 (170)
398 1c1y_A RAS-related protein RAP 88.8 0.14 4.7E-06 47.5 1.6 19 412-430 6-24 (167)
399 2ocp_A DGK, deoxyguanosine kin 88.8 0.16 5.5E-06 51.5 2.3 22 409-430 2-23 (241)
400 3lv8_A DTMP kinase, thymidylat 88.7 0.16 5.4E-06 52.4 2.2 23 408-430 26-48 (236)
401 1svi_A GTP-binding protein YSX 88.7 0.14 4.9E-06 49.1 1.8 21 411-431 25-45 (195)
402 1wms_A RAB-9, RAB9, RAS-relate 88.7 0.14 4.8E-06 48.2 1.6 19 412-430 10-28 (177)
403 3pqc_A Probable GTP-binding pr 88.7 0.14 4.9E-06 48.8 1.8 20 411-430 25-44 (195)
404 3q85_A GTP-binding protein REM 88.7 0.14 4.8E-06 47.8 1.6 19 412-430 5-23 (169)
405 3d3q_A TRNA delta(2)-isopenten 88.6 0.15 5.1E-06 55.5 2.0 22 410-431 8-29 (340)
406 2nzj_A GTP-binding protein REM 88.6 0.14 4.9E-06 47.9 1.6 20 412-431 7-26 (175)
407 2cxx_A Probable GTP-binding pr 88.5 0.15 5.2E-06 48.5 1.8 19 412-430 4-22 (190)
408 2lkc_A Translation initiation 88.5 0.14 4.9E-06 48.1 1.6 22 410-431 9-30 (178)
409 4tmk_A Protein (thymidylate ki 88.5 0.16 5.6E-06 51.3 2.1 22 409-430 3-24 (213)
410 1nz9_A Transcription antitermi 88.5 0.63 2.2E-05 37.2 5.1 45 751-795 4-55 (58)
411 1upt_A ARL1, ADP-ribosylation 88.4 0.15 5.1E-06 47.6 1.6 20 411-430 9-28 (171)
412 1p5z_B DCK, deoxycytidine kina 88.4 0.19 6.5E-06 51.7 2.5 24 407-430 22-45 (263)
413 2fn4_A P23, RAS-related protei 88.3 0.16 5.5E-06 47.7 1.7 20 412-431 12-31 (181)
414 1a5t_A Delta prime, HOLB; zinc 88.3 0.8 2.7E-05 49.0 7.5 23 410-432 25-47 (334)
415 1r6b_X CLPA protein; AAA+, N-t 88.2 0.26 8.8E-06 58.7 3.8 24 409-432 207-230 (758)
416 2h92_A Cytidylate kinase; ross 88.1 0.14 5E-06 50.7 1.4 21 410-430 4-24 (219)
417 2y8e_A RAB-protein 6, GH09086P 88.0 0.17 5.9E-06 47.4 1.7 19 412-430 17-35 (179)
418 3exa_A TRNA delta(2)-isopenten 88.0 0.18 6.1E-06 54.4 2.1 22 409-430 3-24 (322)
419 4dsu_A GTPase KRAS, isoform 2B 87.8 0.17 5.8E-06 48.0 1.6 19 412-430 7-25 (189)
420 3tqf_A HPR(Ser) kinase; transf 87.8 0.28 9.4E-06 48.6 3.1 32 398-429 5-36 (181)
421 3crm_A TRNA delta(2)-isopenten 87.8 0.18 6.1E-06 54.5 1.9 21 410-430 6-26 (323)
422 1r2q_A RAS-related protein RAB 87.8 0.17 6E-06 46.8 1.6 20 412-431 9-28 (170)
423 1sky_E F1-ATPase, F1-ATP synth 87.7 0.64 2.2E-05 52.7 6.5 25 408-432 150-174 (473)
424 1ak2_A Adenylate kinase isoenz 87.7 0.2 6.8E-06 50.6 2.1 23 408-430 15-37 (233)
425 2a9k_A RAS-related protein RAL 87.7 0.18 6.1E-06 47.7 1.6 20 412-431 21-40 (187)
426 3bc1_A RAS-related protein RAB 87.6 0.18 6.1E-06 47.9 1.6 20 412-431 14-33 (195)
427 2bme_A RAB4A, RAS-related prot 87.6 0.19 6.3E-06 47.8 1.7 19 412-430 13-31 (186)
428 3umf_A Adenylate kinase; rossm 87.6 0.22 7.5E-06 50.7 2.3 24 407-430 27-50 (217)
429 1r8s_A ADP-ribosylation factor 87.5 0.18 6.3E-06 46.7 1.6 20 412-431 3-22 (164)
430 2oil_A CATX-8, RAS-related pro 87.5 0.18 6.2E-06 48.5 1.6 20 412-431 28-47 (193)
431 1r6b_X CLPA protein; AAA+, N-t 87.4 0.68 2.3E-05 55.1 6.8 22 411-432 490-511 (758)
432 1z0f_A RAB14, member RAS oncog 87.4 0.19 6.5E-06 47.1 1.6 20 412-431 18-37 (179)
433 3ihw_A Centg3; RAS, centaurin, 87.4 0.19 6.4E-06 48.6 1.6 19 412-430 23-41 (184)
434 3b1v_A Ferrous iron uptake tra 87.4 0.18 6E-06 52.9 1.5 21 411-431 5-25 (272)
435 3cbq_A GTP-binding protein REM 87.3 0.2 6.7E-06 49.0 1.7 19 412-430 26-44 (195)
436 2ohf_A Protein OLA1, GTP-bindi 87.3 0.18 6.3E-06 55.9 1.7 24 409-432 22-45 (396)
437 1m7b_A RND3/RHOE small GTP-bin 87.3 0.2 6.8E-06 48.0 1.7 20 412-431 10-29 (184)
438 1nrj_B SR-beta, signal recogni 87.2 0.19 6.6E-06 49.4 1.6 21 411-431 14-34 (218)
439 2hxs_A RAB-26, RAS-related pro 87.1 0.2 6.8E-06 47.1 1.6 20 412-431 9-28 (178)
440 3foz_A TRNA delta(2)-isopenten 87.1 0.22 7.4E-06 53.6 2.1 22 409-430 10-31 (316)
441 3clv_A RAB5 protein, putative; 87.0 0.2 7E-06 47.7 1.6 20 412-431 10-29 (208)
442 3t1o_A Gliding protein MGLA; G 87.0 0.2 7E-06 47.7 1.6 19 412-430 17-35 (198)
443 3kkq_A RAS-related protein M-R 87.0 0.21 7E-06 47.5 1.6 19 412-430 21-39 (183)
444 3con_A GTPase NRAS; structural 87.0 0.21 7E-06 47.9 1.6 20 412-431 24-43 (190)
445 2bov_A RAla, RAS-related prote 86.9 0.21 7E-06 48.3 1.6 19 412-430 17-35 (206)
446 3tmk_A Thymidylate kinase; pho 86.9 0.25 8.6E-06 50.2 2.3 23 408-430 4-26 (216)
447 2efe_B Small GTP-binding prote 86.8 0.21 7.2E-06 47.1 1.6 20 412-431 15-34 (181)
448 3pxi_A Negative regulator of g 86.8 0.66 2.3E-05 55.3 6.2 23 411-433 523-545 (758)
449 2g6b_A RAS-related protein RAB 86.8 0.22 7.4E-06 47.0 1.6 20 412-431 13-32 (180)
450 3t5g_A GTP-binding protein RHE 86.7 0.22 7.6E-06 47.1 1.7 19 412-430 9-27 (181)
451 2wsm_A Hydrogenase expression/ 86.6 0.25 8.7E-06 48.7 2.1 21 410-430 31-51 (221)
452 1vg8_A RAS-related protein RAB 86.5 0.23 7.7E-06 48.2 1.6 20 412-431 11-30 (207)
453 1mh1_A RAC1; GTP-binding, GTPa 86.5 0.23 7.8E-06 47.0 1.6 19 412-430 8-26 (186)
454 2gf0_A GTP-binding protein DI- 86.4 0.24 8.1E-06 47.6 1.7 20 412-431 11-30 (199)
455 3tkl_A RAS-related protein RAB 86.4 0.23 7.8E-06 47.6 1.6 19 412-430 19-37 (196)
456 2h57_A ADP-ribosylation factor 86.4 0.25 8.4E-06 47.5 1.8 21 412-432 24-44 (190)
457 4dcu_A GTP-binding protein ENG 86.3 0.31 1.1E-05 54.6 2.9 22 410-431 24-45 (456)
458 1ksh_A ARF-like protein 2; sma 86.3 0.23 8E-06 47.3 1.6 21 411-431 20-40 (186)
459 2fg5_A RAB-22B, RAS-related pr 86.1 0.25 8.5E-06 47.7 1.7 20 412-431 26-45 (192)
460 2o52_A RAS-related protein RAB 86.0 0.25 8.6E-06 48.2 1.7 19 412-430 28-46 (200)
461 2eqj_A Metal-response element- 86.0 3.2 0.00011 34.4 7.9 47 751-797 13-63 (66)
462 2fu5_C RAS-related protein RAB 85.9 0.24 8.2E-06 47.0 1.5 19 412-430 11-29 (183)
463 3a8t_A Adenylate isopentenyltr 85.8 0.3 1E-05 53.1 2.3 23 408-430 39-61 (339)
464 2gf9_A RAS-related protein RAB 85.7 0.26 8.9E-06 47.3 1.6 20 412-431 25-44 (189)
465 2ew1_A RAS-related protein RAB 85.7 0.27 9.1E-06 48.5 1.7 19 412-430 29-47 (201)
466 3dz8_A RAS-related protein RAB 85.6 0.27 9.3E-06 47.3 1.7 20 412-431 26-45 (191)
467 1zj6_A ADP-ribosylation factor 85.6 0.28 9.5E-06 47.0 1.7 20 411-430 18-37 (187)
468 3bwd_D RAC-like GTP-binding pr 85.5 0.27 9.3E-06 46.3 1.6 19 412-430 11-29 (182)
469 2il1_A RAB12; G-protein, GDP, 85.4 0.27 9.4E-06 47.5 1.6 20 412-431 29-48 (192)
470 2a5j_A RAS-related protein RAB 85.2 0.28 9.5E-06 47.2 1.6 20 412-431 24-43 (191)
471 2bcg_Y Protein YP2, GTP-bindin 85.2 0.29 9.9E-06 47.6 1.7 20 412-431 11-30 (206)
472 3oes_A GTPase rhebl1; small GT 85.2 0.29 1E-05 47.6 1.7 20 412-431 27-46 (201)
473 2h17_A ADP-ribosylation factor 85.2 0.29 9.8E-06 46.7 1.6 20 412-431 24-43 (181)
474 1x3s_A RAS-related protein RAB 85.1 0.29 1E-05 46.7 1.6 19 412-430 18-36 (195)
475 1z06_A RAS-related protein RAB 85.0 0.29 1E-05 46.9 1.6 19 412-430 23-41 (189)
476 1zbd_A Rabphilin-3A; G protein 85.0 0.29 1E-05 47.4 1.6 19 412-430 11-29 (203)
477 4djt_A GTP-binding nuclear pro 84.9 0.3 1E-05 48.0 1.7 20 412-431 14-33 (218)
478 4hlc_A DTMP kinase, thymidylat 84.9 0.34 1.2E-05 48.5 2.1 22 409-430 2-23 (205)
479 2b6h_A ADP-ribosylation factor 84.8 0.31 1.1E-05 47.3 1.7 20 411-430 31-50 (192)
480 4bas_A ADP-ribosylation factor 84.8 0.3 1E-05 46.9 1.6 21 411-431 19-39 (199)
481 2x77_A ADP-ribosylation factor 84.8 0.31 1.1E-05 46.6 1.7 19 412-430 25-43 (189)
482 2fv8_A H6, RHO-related GTP-bin 84.8 0.26 8.9E-06 48.3 1.2 34 398-431 13-47 (207)
483 3reg_A RHO-like small GTPase; 84.8 0.3 1E-05 47.0 1.6 20 412-431 26-45 (194)
484 2atv_A RERG, RAS-like estrogen 84.8 0.31 1E-05 47.2 1.6 20 412-431 31-50 (196)
485 3l0i_B RAS-related protein RAB 84.8 0.32 1.1E-05 47.2 1.8 19 412-430 36-54 (199)
486 2hf9_A Probable hydrogenase ni 84.7 0.34 1.1E-05 48.0 2.0 21 410-430 39-59 (226)
487 3sr0_A Adenylate kinase; phosp 84.7 0.32 1.1E-05 48.9 1.8 20 411-430 2-21 (206)
488 1zd9_A ADP-ribosylation factor 84.7 0.31 1.1E-05 46.9 1.6 20 412-431 25-44 (188)
489 2r62_A Cell division protease 84.6 0.15 5.3E-06 52.1 -0.6 20 412-431 47-66 (268)
490 3hjn_A DTMP kinase, thymidylat 84.5 1.7 5.7E-05 43.1 7.0 20 411-430 2-21 (197)
491 1gwn_A RHO-related GTP-binding 84.5 0.33 1.1E-05 47.9 1.7 20 412-431 31-50 (205)
492 2p5s_A RAS and EF-hand domain 84.5 0.32 1.1E-05 47.2 1.6 20 411-430 30-49 (199)
493 2q3h_A RAS homolog gene family 84.3 0.33 1.1E-05 46.9 1.6 20 412-431 23-42 (201)
494 3llu_A RAS-related GTP-binding 84.3 0.34 1.2E-05 47.0 1.7 18 412-429 23-40 (196)
495 2j1l_A RHO-related GTP-binding 84.2 0.34 1.2E-05 47.8 1.7 19 412-430 37-55 (214)
496 2xtp_A GTPase IMAP family memb 84.2 0.34 1.1E-05 49.5 1.7 21 411-431 24-44 (260)
497 2iwr_A Centaurin gamma 1; ANK 84.1 0.26 9E-06 46.5 0.8 20 412-431 10-29 (178)
498 3cph_A RAS-related protein SEC 84.1 0.34 1.2E-05 47.1 1.6 19 412-430 23-41 (213)
499 3t5d_A Septin-7; GTP-binding p 84.0 0.34 1.2E-05 50.2 1.7 19 412-430 11-29 (274)
500 2cjw_A GTP-binding protein GEM 84.0 0.35 1.2E-05 47.1 1.6 19 412-430 9-27 (192)
No 1
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=100.00 E-value=7.9e-61 Score=574.43 Aligned_cols=474 Identities=20% Similarity=0.232 Sum_probs=389.7
Q ss_pred CCCcchhhhhHHHHhhcCHHHH--------HHHHHhhcCCHHHHHHHhc--cCCCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 003747 41 DSDDKKSRVVYESLRVLEWDKL--------CHSVSSFARTSLGREATLT--QLWSINQTYQDSLRLLDETNAAIEMQKHG 110 (798)
Q Consensus 41 ~~~~~~~~m~~~~l~~Le~~~i--------~~~l~~~~~s~~g~~~~~~--l~~~~~~~~~~~~~~l~et~e~~~~~~~~ 110 (798)
-....-|.|+..|++.|||.+. +-.+..+|.|++|+++++. +.| ..|.+.++++++.+.++.. +...
T Consensus 261 ~~~~~~m~ld~~t~~~LEl~~~~~~~~~gSL~~ll~~t~T~~G~RlL~~wl~~P--l~d~~~I~~R~~~v~~~~~-~~~~ 337 (800)
T 1wb9_A 261 EREQDSIIMDAATRRNLEITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMP--VRDTRVLLERQQTIGALQD-FTAG 337 (800)
T ss_dssp CCGGGBCEECHHHHHHTTSSSCTTSCSTTSHHHHHCCCSSHHHHHHHHHHHHSC--BCCHHHHHHHHHHHHHTGG-GHHH
T ss_pred EccCCEEEecHHHHHhccCcccCCCCccccHHHHhCCCcCHHHHHHHHHHhhCC--CCCHHHHHHHHHHHHHHHH-HHHH
Confidence 3445567799999999999998 7789999999999999988 444 5799999999999999877 2211
Q ss_pred CCCCCCCCCCchhHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHhhccchHHH----------
Q 003747 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAA-IKEDADLYIRFMPLTQM---------- 179 (798)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~g~~L~~~el~~i~~~l~~~~~l~~~~~~~-~~~~~~~~~~l~~~~~l---------- 179 (798)
...++.++. |++..+.|+..| .+++.||..+..+|..+..+++++... ......+...+.++.++
T Consensus 338 -l~~~L~~~~--Dler~l~r~~~~-~~~~~dl~~l~~~l~~~~~l~~~l~~~~~~~L~~l~~~l~~~~~l~~~i~~~i~~ 413 (800)
T 1wb9_A 338 -LQPVLRQVG--DLERILARLALR-TARPRDLARMRHAFQQLPELRAQLETVDSAPVQALREKMGEFAELRDLLERAIID 413 (800)
T ss_dssp -HHHHHHTTC--SHHHHHHHHHHT-CCCHHHHHHHHHHHTTHHHHHHHHHSCCCHHHHHHHHHHCCCHHHHHHHHHHBCS
T ss_pred -HHHHhcCCc--cHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcccHHHHHHHHHHHhCc
Confidence 123467777 489999999987 899999999999999999998877421 00011111111111111
Q ss_pred ----------------------H-------HHHHHHHHhhhccccceeeeeeECCE---EEEEecCCcc-CCC-cEEEe-
Q 003747 180 ----------------------L-------YQLMDMLIRNENNESLFLEVSSIHGR---LCIRTGADQL-SFK-GLLLS- 224 (798)
Q Consensus 180 ----------------------i-------~~~l~~~~~~~~~~~~~~~vt~r~gR---~vipVk~~~~-~~~-Giv~~- 224 (798)
+ ++.+.++..+.+.......++++.+| |+|||+.+++ ++| |++|.
T Consensus 414 ~~~~~~~~~~~I~~g~~~eLd~lr~~~~~~~~~l~~~~~~~~~~~~~~~l~i~~~~~~gy~i~V~~~~~~~vp~~~i~~~ 493 (800)
T 1wb9_A 414 TPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQ 493 (800)
T ss_dssp SCCSCSTTCCCBCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCEEEEETTTEEEEEEEHHHHTTSCTTCEEEE
T ss_pred CchhhhhcCCeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCcceEEEEEeccccccCCcceEEee
Confidence 2 22333333332211112246777777 9999999999 888 89984
Q ss_pred -eecCeEEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Q 003747 225 -SSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 303 (798)
Q Consensus 225 -~sg~t~~ieP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~l~~~~~~l~~~~~~l~~LD~~~a~A~~a~~~~~~~P~~ 303 (798)
.+|.+.|++|. ++++|+++.+++.++.+++.+|+.+|+..+..+.+.|..+.+.+++||+++|+|.+|.+++||+|.+
T Consensus 494 s~~~~~~f~tp~-l~~l~~~i~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~ 572 (800)
T 1wb9_A 494 TLKNAERYIIPE-LKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTF 572 (800)
T ss_dssp ECSSEEEEECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCEE
T ss_pred eccCCCEEeCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccEE
Confidence 47888999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccccCCCCccccccCCcccceEEecCCccchhhhhhhHhHHHHHHhHHHhHHHHHHhhhcCCCCccCCCccCCC
Q 003747 304 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNL 383 (798)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (798)
++ +..+.++++|||+++..
T Consensus 573 ~~----------------------~~~i~i~~~rHP~le~~--------------------------------------- 591 (800)
T 1wb9_A 573 ID----------------------KPGIRITEGRHPVVEQV--------------------------------------- 591 (800)
T ss_dssp CS----------------------SSCEEEEEECCTTHHHH---------------------------------------
T ss_pred CC----------------------CCCEEEEeccccEEEcc---------------------------------------
Confidence 73 23599999999999521
Q ss_pred CCchhhhhhhcCCcceeeeEEECCCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCch
Q 003747 384 SPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDE 463 (798)
Q Consensus 384 ~~~~~~~~~~~~~~~V~~disL~~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~ 463 (798)
.++.+|++|++|+..|++++|+||||||||||||+|+++.++++.|.++|+ ....++++++++.+++..
T Consensus 592 ----------~~~~~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa-~~~~i~~~~~i~~~~~~~ 660 (800)
T 1wb9_A 592 ----------LNEPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPA-QKVEIGPIDRIFTRVGAA 660 (800)
T ss_dssp ----------CSSCCCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSS-SEEEECCCCEEEEEEC--
T ss_pred ----------CCCceeeecccccCCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccch-hcccceeHHHHHhhCCHH
Confidence 034689999999977899999999999999999999999999999999998 567788899999999999
Q ss_pred hhHhhhhhhhhHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhccc
Q 003747 464 QSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTLKYSN 542 (798)
Q Consensus 464 ~si~~~lstfs~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~-g~t~VIitTHd~el~~~a~~~ 542 (798)
+++..++++|+.+|.++..++..+++|+||||||||+|||+.++..++.++++.+.+. |++ +|++|||.++..++++.
T Consensus 661 d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~-vl~~TH~~el~~l~d~~ 739 (800)
T 1wb9_A 661 DDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKAL-TLFATHYFELTQLPEKM 739 (800)
T ss_dssp ---------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCE-EEEECSCGGGGGHHHHS
T ss_pred HHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCe-EEEEeCCHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999888899999884 887 99999999999999999
Q ss_pred cceeeeEEEEecc--cceeeEEeecCCCCCchHHHHHHHcCCChHHHHHHHHHHH
Q 003747 543 DFFENACMEFDEV--KLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG 595 (798)
Q Consensus 543 ~~l~ng~v~fd~~--~l~ptY~L~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~ 595 (798)
..+.|++|.++.. ++.|+|++..|.+++|||+++|++.|+|++|+++|++++.
T Consensus 740 ~~v~n~~~~~~~~~~~l~~~ykl~~G~~~~S~gi~vA~~~GlP~~vi~rA~~~l~ 794 (800)
T 1wb9_A 740 EGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLR 794 (800)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hceEEEEEEEEEcCCcEEEEEEEEECCCCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999999764 5999999999999999999999999999999999999874
No 2
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=100.00 E-value=5.9e-55 Score=528.18 Aligned_cols=474 Identities=22% Similarity=0.251 Sum_probs=366.6
Q ss_pred CcchhhhhHHHHhhcCHH----------HHHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHH----HHH
Q 003747 43 DDKKSRVVYESLRVLEWD----------KLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE----MQK 108 (798)
Q Consensus 43 ~~~~~~m~~~~l~~Le~~----------~i~~~l~~~~~s~~g~~~~~~l~~~~~~~~~~~~~~l~et~e~~~----~~~ 108 (798)
...-|.|+..|++-||.- .+...| .+|.|++|++.++.-+..|..|...++.+|+-+.++.. +..
T Consensus 315 ~~~~m~LD~~T~rnLEL~~~~~~~~~~gSLl~~L-d~t~T~mG~RlLr~Wl~~PL~d~~~I~~R~daVe~l~~~~~~~~~ 393 (918)
T 3thx_B 315 KMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVL-DHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFG 393 (918)
T ss_dssp TTTBCEECHHHHHHTTSSSCTTTCSSTTSHHHHH-CCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCCCTHHH
T ss_pred CCCEEEECHHHHHhcCCcccCCCCCCCCcHHHHH-hhCCChHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCCcHHHH
Confidence 334577999999888862 355544 89999999999987322225899999999998877641 111
Q ss_pred cCCCCCCCCCCCchhHHHHHHHhhhCCCCCHHHHHHHHHHHHHHH-HHHHHHHH------------H---hh----hhHH
Q 003747 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSE-TLQLSLRA------------A---IK----EDAD 168 (798)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~L~~~el~~i~~~l~~~~-~l~~~~~~------------~---~~----~~~~ 168 (798)
. ..--+.++.| +...+.|+.-| ..++.||..+...|..+. .++..+.. . +. ....
T Consensus 394 ~--l~~~L~~i~D--leRll~ri~~~-~~~~~dl~~l~~~l~~l~~~l~~~l~~~~~~~~~~lL~~~~~~~~~~~~~~~~ 468 (918)
T 3thx_B 394 Q--IENHLRKLPD--IERGLCSIYHK-KCSTQEFFLIVKTLYHLKSEFQAIIPAVNSHIQSDLLRTVILEIPELLSPVEH 468 (918)
T ss_dssp H--HHHTTTTCCC--HHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHTGGGHH
T ss_pred H--HHHHHccCcc--HHHHHHHhccC-cCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCHHHHHHHHhhhhhHHHHHH
Confidence 0 0112566764 78888877755 679999999998888665 33322211 0 00 0011
Q ss_pred HHh-----------------hccchHHH--HHH-------HHHHHHhhhc---cccceeeeeeECCEEEEEecCCcc-CC
Q 003747 169 LYI-----------------RFMPLTQM--LYQ-------LMDMLIRNEN---NESLFLEVSSIHGRLCIRTGADQL-SF 218 (798)
Q Consensus 169 ~~~-----------------~l~~~~~l--i~~-------~l~~~~~~~~---~~~~~~~vt~r~gR~vipVk~~~~-~~ 218 (798)
+.. .+..++.+ +++ .++..+.+.+ ....+..++++++||+|||+.+++ ++
T Consensus 469 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~g~~y~iev~~~~~~~v 548 (918)
T 3thx_B 469 YLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCI 548 (918)
T ss_dssp HHTTSCHHHHHHTCSTTSCSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCCEEETTEEEEEEEETTSGGGS
T ss_pred HHHHHHHhhhhcCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccceeEeecCCEEEEEEcHHHHhhC
Confidence 111 11111211 111 1222221111 111234689999999999999999 99
Q ss_pred CcEEE--eeecCeE-EEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003747 219 KGLLL--SSSGIGS-VIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 295 (798)
Q Consensus 219 ~Giv~--~~sg~t~-~ieP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~l~~~~~~l~~~~~~l~~LD~~~a~A~~a~~ 295 (798)
||.+| +++|++. |++| +++++|+++..++.+....+++++.++...+..+.+.|..+.+.+++||+++|+|.+|..
T Consensus 549 p~~~~~~~~~~~~~rf~tp-el~~~~~~~~~~~e~~~~~e~~~~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~ 627 (918)
T 3thx_B 549 PTDWVKVGSTKAVSRFHSP-FIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQ 627 (918)
T ss_dssp CSSCEEEEECSSEEEEECH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCeEEEEEecCCeeEEECH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99988 5688885 6666 599999999999988888888999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCccccccccCCCCccccccCCcccceEEecCCccchhhhhhhHhHHHHHHhHHHhHHHHHHhhhcCCCCcc
Q 003747 296 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAAR 375 (798)
Q Consensus 296 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (798)
++||+|.+++ +..+.++++|||+++...
T Consensus 628 ~~~~~P~~~~----------------------~~~i~i~~~rHP~le~~~------------------------------ 655 (918)
T 3thx_B 628 GDYCRPTVQE----------------------ERKIVIKNGRHPVIDVLL------------------------------ 655 (918)
T ss_dssp SSCBCCEEES----------------------SCEEEEEEECCHHHHHHT------------------------------
T ss_pred CCCcCCcccC----------------------CCcEEEEeccchhhhhhh------------------------------
Confidence 9999999984 236999999999995311
Q ss_pred CCCccCCCCCchhhhhhhcCCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhh
Q 003747 376 KGEKDTNLSPSEMQVSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 454 (798)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~ 454 (798)
..++.+|++|++|+ ..|++++|+||||||||||||+|+++.+++|.|+++|+ ....+++++
T Consensus 656 -----------------~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa-~~~~i~~~d 717 (918)
T 3thx_B 656 -----------------GEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPA-EEATIGIVD 717 (918)
T ss_dssp -----------------CSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSS-SEEEEECCS
T ss_pred -----------------ccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccc-hhhhhhHHH
Confidence 01347899999999 78999999999999999999999999999999999998 667788899
Q ss_pred HHhhhcCchhhHhhhhhhhhHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCCcEEEEEecch
Q 003747 455 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHG 533 (798)
Q Consensus 455 ~i~~~ig~~~si~~~lstfs~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~-~g~t~VIitTHd~ 533 (798)
+++.++|..+++..++++|+++|+++..++..+++|+||||||||+||||.++.++++++++++.+ .|++ +|++|||+
T Consensus 718 ~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~t-vl~vTH~~ 796 (918)
T 3thx_B 718 GIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSL-TLFVTHYP 796 (918)
T ss_dssp EEEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCE-EEEECSCG
T ss_pred HHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCe-EEEEeCcH
Confidence 999999999999999999999999999999999999999999999999999999999899999875 5887 99999999
Q ss_pred hHHhhhccccc-eeeeEEEEe----------------cccceeeEEeecCCCCCchHHHHHHHcCCChHHHHHHHHHH
Q 003747 534 ELKTLKYSNDF-FENACMEFD----------------EVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLY 594 (798)
Q Consensus 534 el~~~a~~~~~-l~ng~v~fd----------------~~~l~ptY~L~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~ 594 (798)
++..++++... +.|++|.|. .+++.|+|++..|.+++|||+++|++.|+|++|+++|++++
T Consensus 797 el~~l~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~l~flykl~~G~~~~S~gi~vA~~aGlp~~vi~rA~~~~ 874 (918)
T 3thx_B 797 PVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKS 874 (918)
T ss_dssp GGGGHHHHTTTTEEEEEEEEECC-----------------CCEEEEEEESCCCTTTTHHHHTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHhhcccceEEEEEEEEEcccccccccccccCCCCceeEeeeeccCCCCCcHHHHHHHHhCcCHHHHHHHHHHH
Confidence 99999988875 999999983 24699999999999999999999999999999999999875
No 3
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=100.00 E-value=2e-55 Score=525.05 Aligned_cols=471 Identities=23% Similarity=0.252 Sum_probs=381.8
Q ss_pred cCCCcchhhhhHHHHhhcCHHH------HHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHH--HHcCC
Q 003747 40 SDSDDKKSRVVYESLRVLEWDK------LCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM--QKHGS 111 (798)
Q Consensus 40 ~~~~~~~~~m~~~~l~~Le~~~------i~~~l~~~~~s~~g~~~~~~l~~~~~~~~~~~~~~l~et~e~~~~--~~~~~ 111 (798)
.-....-|.|+..|++.||+.+ .+-.+..+|.|++|++.++..+..|..|.+.++++++.++++..- +...
T Consensus 243 ~~~~~~~m~lD~~t~~~LEl~~~~~~~gsL~~~ld~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~V~~l~~~~~~~~~- 321 (765)
T 1ewq_A 243 FYDPGAFMRLPEATLRALEVFEPLRGQDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREG- 321 (765)
T ss_dssp ECCGGGSCBCCHHHHHHTTSSSCSSSCCCHHHHHCCCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHCHHHHHH-
T ss_pred EECCCCeEEecHHHHHhCcCccCCCccchHHHHhCCCCCHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCHHHHHH-
Confidence 3344566779999999999997 777888999999999999882222257999999999999998873 2111
Q ss_pred CCCCCCCCCchhHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHh---hhhHHHH----------------
Q 003747 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLR--AAI---KEDADLY---------------- 170 (798)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~g~~L~~~el~~i~~~l~~~~~l~~~~~--~~~---~~~~~~~---------------- 170 (798)
....+.++.| ++..+.|+..| .+++.||..+..+|..+..++..+. ..+ ....+..
T Consensus 322 l~~~L~~~~D--ler~l~r~~~~-~~~~~dl~~l~~~l~~~~~l~~~l~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~ 398 (765)
T 1ewq_A 322 VRRLLYRLAD--LERLATRLELG-RASPKDLGALRRSLQILPELRALLGEEVGLPDLSPLKEELEAALVEDPPLKVSEGG 398 (765)
T ss_dssp HHHHHTTCCC--HHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHCTTSCCCCCHHHHHHHHHHBCSSCCSCTTSSC
T ss_pred HHHHHhcCCC--HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhccCC
Confidence 1234677874 88999998876 7999999999999999999987752 000 0000000
Q ss_pred ---h----hccchHHH---HHHHHHHHHhhhccccceeeeeeECCE---EEEEecCCcc-CCCc-EEEe--eecCeEEEe
Q 003747 171 ---I----RFMPLTQM---LYQLMDMLIRNENNESLFLEVSSIHGR---LCIRTGADQL-SFKG-LLLS--SSGIGSVIE 233 (798)
Q Consensus 171 ---~----~l~~~~~l---i~~~l~~~~~~~~~~~~~~~vt~r~gR---~vipVk~~~~-~~~G-iv~~--~sg~t~~ie 233 (798)
+ .|..++.. +++.+.++..+.....-...++++.+| |+|+|+.+++ ++|| ++|. .+|.+.|++
T Consensus 399 ~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~l~i~~~~~~gy~i~v~~~~~~~vp~~~i~~~s~~~~~rf~t 478 (765)
T 1ewq_A 399 LIREGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTL 478 (765)
T ss_dssp CBCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEETTTEEEEEEEGGGGGGSCTTCEEEEECSSEEEEEC
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEeccceeEEEEeehHhhhcCCcceEEEEeccCCcEEEC
Confidence 0 01111111 122233322221111112245666666 9999999999 9998 7773 478889999
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCcccccccc
Q 003747 234 PLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSL 313 (798)
Q Consensus 234 P~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~l~~~~~~l~~~~~~l~~LD~~~a~A~~a~~~~~~~P~~~~~~~~~~~~ 313 (798)
|. ++++|+++.+++.++.+++.+|+.+|+..+..+.+.|..+.+.+++||+++|+|.+|..+++|+|.+ .
T Consensus 479 p~-l~el~~~i~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~la~LD~l~s~a~~a~~~~~~~P~~-~-------- 548 (765)
T 1ewq_A 479 PE-MKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRPRF-G-------- 548 (765)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBCCEE-S--------
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCceeecc-C--------
Confidence 99 9999999999999999999999999999999999999999999999999999999999999999998 2
Q ss_pred CCCCccccccCCcccceEEecCCccchhhhhhhHhHHHHHHhHHHhHHHHHHhhhcCCCCccCCCccCCCCCchhhhhhh
Q 003747 314 THEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSAL 393 (798)
Q Consensus 314 ~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (798)
+.+.++++|||+++.
T Consensus 549 ---------------~~i~i~~~rHP~le~-------------------------------------------------- 563 (765)
T 1ewq_A 549 ---------------DRLQIRAGRHPVVER-------------------------------------------------- 563 (765)
T ss_dssp ---------------SSEEEEEECCTTGGG--------------------------------------------------
T ss_pred ---------------CcEEEEEeECceEcc--------------------------------------------------
Confidence 248999999999841
Q ss_pred cCCcceeeeEEECCCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhh
Q 003747 394 ELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTF 473 (798)
Q Consensus 394 ~~~~~V~~disL~~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstf 473 (798)
++.+|++|++|+ |++++|+||||||||||||+|+++..+++.|.++|+ ....++++++++.++++.+++..++|+|
T Consensus 564 -~~~~vl~disl~--g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa-~~~~i~~v~~i~~~~~~~d~l~~g~S~~ 639 (765)
T 1ewq_A 564 -RTEFVPNDLEMA--HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA-EEAHLPLFDGIYTRIGASDDLAGGKSTF 639 (765)
T ss_dssp -TSCCCCEEEEES--SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS-SEEEECCCSEEEEECCC------CCSHH
T ss_pred -CCceEeeeccCC--CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeeh-hccceeeHHHhhccCCHHHHHHhcccHH
Confidence 236899999999 899999999999999999999999989999999997 6677888899999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 474 SGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 474 s~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
+.++.++..++..+++|+||||||||+||++.++..+..++++.+.+.|++ +|++|||.++..++ ...+.|++|.++
T Consensus 640 ~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~-vl~~TH~~~l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 640 MVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAY-TLFATHYFELTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp HHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCE-EEEECCCHHHHTCC--CTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCE-EEEEeCCHHHHHhh--hhcceEEEEEEE
Confidence 999999999998899999999999999999999888877889988888887 99999999999887 778999999998
Q ss_pred cc--cceeeEEeecCCCCCchHHHHHHHcCCChHHHHHHHHHHHH
Q 003747 554 EV--KLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 596 (798)
Q Consensus 554 ~~--~l~ptY~L~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~~ 596 (798)
.. .+.|+|++..|.+++|||+++|++.|+|++|+++|++++..
T Consensus 717 ~~~~~l~f~ykl~~G~~~~Sygi~vA~~aGlP~~VI~rA~~~l~~ 761 (765)
T 1ewq_A 717 EEAGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQA 761 (765)
T ss_dssp CCSSSCEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred EcCCeEEEEEEEEECCCCCchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 64 48899999999999999999999999999999999998753
No 4
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=100.00 E-value=2.7e-51 Score=497.48 Aligned_cols=479 Identities=19% Similarity=0.233 Sum_probs=369.9
Q ss_pred CCcchhhhhHHHHhhcCHH-----------HHHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHH---HH
Q 003747 42 SDDKKSRVVYESLRVLEWD-----------KLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE---MQ 107 (798)
Q Consensus 42 ~~~~~~~m~~~~l~~Le~~-----------~i~~~l~~~~~s~~g~~~~~~l~~~~~~~~~~~~~~l~et~e~~~---~~ 107 (798)
....-|.|+..|++.||.- .+...| .+|.|++|+++++..+..|..|...++++|+-+.++.. +.
T Consensus 295 ~~~~~m~lD~~t~~nLEl~~~~~~~~~~~~SL~~~l-d~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~ 373 (934)
T 3thx_A 295 DFSQYMKLDIAAVRALNLFQGSVEDTTGSQSLAALL-NKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELR 373 (934)
T ss_dssp CGGGBCEECHHHHHHTTSCC---------CCHHHHH-CCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCHHHH
T ss_pred cCCCeEEeCHHHHhhccccccCCCCCCCCCcHHHHh-ccCCCHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHhhChHHH
Confidence 3455667999999888852 244444 68999999999887433335899999999999887764 11
Q ss_pred HcCCCCCCCCCCCchhHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh------------hhhHHHHhhccc
Q 003747 108 KHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAI------------KEDADLYIRFMP 175 (798)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~L~~~el~~i~~~l~~~~~l~~~~~~~~------------~~~~~~~~~l~~ 175 (798)
..-. ...+.++.| +...+.|+..| .-++.++..+..+|..+..+++.+...- ....+....+..
T Consensus 374 ~~l~-~~~L~~i~D--leRl~~ri~~~-~~~~~dl~~l~~~l~~~~~l~~~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~ 449 (934)
T 3thx_A 374 QTLQ-EDLLRRFPD--LNRLAKKFQRQ-AANLQDCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSK 449 (934)
T ss_dssp HHHH-TTTGGGCCC--HHHHHHHHHTT-CCCHHHHHHHHHHHTTHHHHHHHHHHTCCSSSTTGGGGTHHHHHHHHHHHHH
T ss_pred HHHH-HHHhcCCCC--HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHhhHHH
Confidence 1000 112677764 88888888766 4588999999999988877776654310 000111011111
Q ss_pred hHHH----------------------------------HHHHHHHHHhhhccc------cce--eeeeeECCEEEEEecC
Q 003747 176 LTQM----------------------------------LYQLMDMLIRNENNE------SLF--LEVSSIHGRLCIRTGA 213 (798)
Q Consensus 176 ~~~l----------------------------------i~~~l~~~~~~~~~~------~~~--~~vt~r~gR~vipVk~ 213 (798)
+.++ +++.+++++.+.... ..+ .....++..+.||++.
T Consensus 450 ~~~~i~~~i~~~~~~~g~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~lk~~~~~~~Gy~i~v~~~~ 529 (934)
T 3thx_A 450 FQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKE 529 (934)
T ss_dssp HHHHHHTTBCTTGGGTTCCCBCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCBTTTBEEEECC--CEEEEECHHH
T ss_pred HHHHHHHHhCcchhhcCCceeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEEeccceEEEEEEech
Confidence 1110 222333333221111 112 2345566566677654
Q ss_pred Ccc---CCCcEEEeeecCeEEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 003747 214 DQL---SFKGLLLSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARA 290 (798)
Q Consensus 214 ~~~---~~~Giv~~~sg~t~~ieP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~l~~~~~~l~~~~~~l~~LD~~~a~A 290 (798)
+.. ...++.++.+.++.++.|.++.++|+++.+++.++.+++++|+.+|+..+..+.+.|..+.+++++||+++|+|
T Consensus 530 ~~~~~~~~~~~~~~t~~~~~rf~t~el~~l~~~~~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A 609 (934)
T 3thx_A 530 EKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFA 609 (934)
T ss_dssp HTTTTTCSSCEEEEEC--CEEEECTTHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCCcEEEEcccCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 34588888888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH--cCCCCCcccCccccccccCCCCccccccCCcccceEEecCCccchhhhhhhHhHHHHHHhHHHhHHHHHHhhh
Q 003747 291 TYSLS--FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKL 368 (798)
Q Consensus 291 ~~a~~--~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~~~~~l~~~~~~~~~~~~~~~~~~~ 368 (798)
.+|.. ++||+|.++.. ++..+.++++|||++...
T Consensus 610 ~~a~~~~~~~~rP~~~~~--------------------~~~~i~i~~~rHP~le~~------------------------ 645 (934)
T 3thx_A 610 HVSNGAPVPYVRPAILEK--------------------GQGRIILKASRHACVEVQ------------------------ 645 (934)
T ss_dssp HHHHTSSSCCBCCEEECT--------------------TSCEEEEEEECCTTTTTC------------------------
T ss_pred HHHHhccCCCcCCeeccC--------------------CCcceEeecCccchhhhc------------------------
Confidence 99997 89999999741 124699999999999531
Q ss_pred cCCCCccCCCccCCCCCchhhhhhhcCCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccc
Q 003747 369 YGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEY 447 (798)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~ 447 (798)
.++.+|++|++|+ ..|++++|+||||||||||||+++++.+++|.|+++|+ ..
T Consensus 646 -------------------------~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa-~~ 699 (934)
T 3thx_A 646 -------------------------DEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC-ES 699 (934)
T ss_dssp ---------------------------CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE-EE
T ss_pred -------------------------CCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc-cc
Confidence 1346899999999 67899999999999999999999999999999999998 67
Q ss_pred cccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCCcEE
Q 003747 448 AKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLT 526 (798)
Q Consensus 448 ~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~-~g~t~V 526 (798)
..+++++.++.++|..+++..++|+|+++|.++..++..+++|+||||||||+||||.++.++++++++++.+ .|++ +
T Consensus 700 ~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~-v 778 (934)
T 3thx_A 700 AEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAF-C 778 (934)
T ss_dssp EEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCE-E
T ss_pred ccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCE-E
Confidence 7888899999999999999999999999999999999999999999999999999999999999999999987 4887 9
Q ss_pred EEEecchhHHhhhccccceeeeEEEE--ecccceeeEEeecCCCCCchHHHHHHHcCCChHHHHHHHHHHHH
Q 003747 527 IATTHHGELKTLKYSNDFFENACMEF--DEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 596 (798)
Q Consensus 527 IitTHd~el~~~a~~~~~l~ng~v~f--d~~~l~ptY~L~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~~ 596 (798)
|++|||+++..++++...+.||+|.+ +.+.+.++|++..|.++.|||+.+|++.|+|++|+++|++++..
T Consensus 779 l~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~~~y~l~~G~~~~S~gi~vA~~~glp~~vi~~A~~~~~~ 850 (934)
T 3thx_A 779 MFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALE 850 (934)
T ss_dssp EEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEEEEEEEEESCCCCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred EEEcCcHHHHHHhcccceeEeeEEEEEecCCcEEEEEEEeeCCCCCchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999986 45679999999999999999999999999999999999998754
No 5
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=100.00 E-value=1.7e-49 Score=486.65 Aligned_cols=482 Identities=20% Similarity=0.215 Sum_probs=349.4
Q ss_pred CcchhhhhHHHHhhcCHH----------HHHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHH-cCC
Q 003747 43 DDKKSRVVYESLRVLEWD----------KLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111 (798)
Q Consensus 43 ~~~~~~m~~~~l~~Le~~----------~i~~~l~~~~~s~~g~~~~~~l~~~~~~~~~~~~~~l~et~e~~~~~~-~~~ 111 (798)
...-|.|+..|++-||.- .+...| .+|.|++|+++++.-+..|..|.+.++++|+-++++..-.. ...
T Consensus 391 ~~~~m~LD~~T~~nLEl~~~~~~g~~~gSLl~~L-d~t~T~mG~RLLr~WL~~PL~d~~~I~~RldaVe~l~~~~~~~~~ 469 (1022)
T 2o8b_B 391 AYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERV-DTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISE 469 (1022)
T ss_dssp CCCBCBCCHHHHHHTTCSSCCSSSSCCCSHHHHH-CCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCeEEeCHHHHHhhcCCccCCCCCCCCcHHHHh-CcCCCchhHHHHHHHHhCccCCHHHHHHHHHHHHHHHhChHHHHH
Confidence 455677999999888863 356666 78999999998876554446899999999998877753110 000
Q ss_pred CCCCCCCCCchhHHHHHHHhhh-CCC------------------CCHHHHHHHHHH---HHHHHHHHHHHHHHh---h--
Q 003747 112 CSLDLTGVDLSLVKSAIREVRR-ASP------------------LRPNEALAVVAL---LQFSETLQLSLRAAI---K-- 164 (798)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~-g~~------------------L~~~el~~i~~~---l~~~~~l~~~~~~~~---~-- 164 (798)
..--+.++. |+...+.|... |.. .++.++.++..+ +..+..+...+.... .
T Consensus 470 l~~~L~~i~--DlERll~Ri~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~i~~~l~~~~~~~~s~ 547 (1022)
T 2o8b_B 470 VVELLKKLP--DLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSK 547 (1022)
T ss_dssp HHHHHTTCC--CHHHHHHHHHHHHCHHHHHHCGGGGCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHhcCc--cHHHHHHHHHhcCCcccccccchhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCcH
Confidence 001145565 47777777765 331 134455555555 344444444333100 0
Q ss_pred hhHHHH--------hhccchHHH--------------------------------------HHHHHHHHHhhhccccc--
Q 003747 165 EDADLY--------IRFMPLTQM--------------------------------------LYQLMDMLIRNENNESL-- 196 (798)
Q Consensus 165 ~~~~~~--------~~l~~~~~l--------------------------------------i~~~l~~~~~~~~~~~~-- 196 (798)
-...+. ..+..+.++ +++.|++++.+......
T Consensus 548 lL~~~~~~~~~~~~~~~~~l~~~~~~~~~~id~~~~~~~g~i~~~~g~~~~ld~~r~~~~~~~~~l~~~~~~~~~~~~~~ 627 (1022)
T 2o8b_B 548 ILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRNRIGCR 627 (1022)
T ss_dssp HHHHHTSBTTTSSSSCBCCCHHHHHHHHTTSCHHHHHHSCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHTSSGGGSSCS
T ss_pred HHHHHHHhhccccccchHHHHHHHHHHHHHhCchhhhcCCcEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 000111 011111111 22334444433322111
Q ss_pred -eeeeeeECCEEEEEecCCcc-C-CCcEE-Ee--eecCeEEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcH
Q 003747 197 -FLEVSSIHGRLCIRTGADQL-S-FKGLL-LS--SSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDL 270 (798)
Q Consensus 197 -~~~vt~r~gR~vipVk~~~~-~-~~Giv-~~--~sg~t~~ieP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~l~~~~ 270 (798)
+..++++++||+|+|+.+++ + +||.+ |. .+|.+.|+.|. +.+++.++..++.++.+.+..+..++...+..+.
T Consensus 628 ~l~~~~~~~~~y~i~v~~~~~~~~vp~~~~~~~t~~~~~rf~t~e-l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~ 706 (1022)
T 2o8b_B 628 TIVYWGIGRNRYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKT-IEKKLANLINAEERRDVSLKDCMRRLFYNFDKNY 706 (1022)
T ss_dssp CCEEECCGGGCCEEEECTTTTSSCCCC-CEEEEETTEEEECCTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred ceeEEEecCceEEEEEehhhhcccCCCceEEeeeccCccEEechH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23577889999999999998 7 89876 43 36777899886 6677777777776666667777778888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCCcccCccccccccCCCCccccccCCcccceEEecCCccchhhhhhhHh
Q 003747 271 DEIEKMLNGIIQLDVVNARATYSL--SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQK 348 (798)
Q Consensus 271 ~~l~~~~~~l~~LD~~~a~A~~a~--~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~~~~~ 348 (798)
+.|..+.+++++||+++|+|.+|. ..++|+|.++.+. .+...+.+.++|||++....
T Consensus 707 ~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~~P~~~~~~------------------~~~~~l~i~~~rHP~l~~~~--- 765 (1022)
T 2o8b_B 707 KDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPE------------------DTPPFLELKGSRHPCITKTF--- 765 (1022)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSSCEECCEECCTT------------------TSCCCEEEEEECCCC--------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhccCCccCCccccCC------------------CCCceEEEEeccccEEEEEe---
Confidence 999999999999999999999999 7899999997310 01235999999999985210
Q ss_pred HHHHHHhHHHhHHHHHHhhhcCCCCccCCCccCCCCCchhhhhhhcCCcceeeeEEEC-CC-------CeEEEEEecCCC
Q 003747 349 TQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIA-RK-------TRVLVITGPNTG 420 (798)
Q Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~disL~-~~-------g~iv~ItGPNGs 420 (798)
.++.+|++|++|+ .. |++++|+|||||
T Consensus 766 ---------------------------------------------~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgs 800 (1022)
T 2o8b_B 766 ---------------------------------------------FGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMG 800 (1022)
T ss_dssp ----------------------------------------------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTS
T ss_pred ---------------------------------------------cCCceEeeeeeeccccccccCCCCcEEEEECCCCC
Confidence 1346899999998 44 799999999999
Q ss_pred CchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHHHhCCCCeEEEEecCCC
Q 003747 421 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGA 500 (798)
Q Consensus 421 GKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il~~a~~psLLLLDEP~s 500 (798)
|||||||+||++.++++.|+++|+ ....+++++.++.++|..+++..++++|+++|.++..+++.+++|+||||||||+
T Consensus 801 GKSTlLr~iGl~~~~aqiG~~Vpq-~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~ 879 (1022)
T 2o8b_B 801 GKSTLMRQAGLLAVMAQMGCYVPA-EVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGR 879 (1022)
T ss_dssp SHHHHHHHHHHHHHHHTTTCCEES-SEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEECTTT
T ss_pred ChHHHHHHHHHHHHHhheeEEecc-CcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEECCCC
Confidence 999999999888899999999998 5678889999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhccccceeeeEEEE---------ecccceeeEEeecCCCCC
Q 003747 501 GTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEF---------DEVKLKPTYKILWGVPGR 570 (798)
Q Consensus 501 GlDp~eg~al~~all~~L~~~-g~t~VIitTHd~el~~~a~~~~~l~ng~v~f---------d~~~l~ptY~L~~G~~g~ 570 (798)
|||+.++.++++++++++.+. |++ +|++|||+++.....+...+.||+|.+ +.+.+.++|++..|.+++
T Consensus 880 Gtd~~dg~~~~~~il~~L~~~~g~~-vl~~TH~~el~~~~~d~~~v~~g~~~~~~~~~~~~~~~~~l~~ly~l~~G~~~~ 958 (1022)
T 2o8b_B 880 GTATFDGTAIANAVVKELAETIKCR-TLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPK 958 (1022)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTSCCE-EEEECCCHHHHHHTSSCSSEEEEEEEEC-------------CEEEEEESSCCCC
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCE-EEEEeCCHHHHHHhCCcceeecCeEEEEEecCcccCCCCceEEEeeecCCCCCC
Confidence 999999999889999999876 887 999999999997655556678999984 345789999999999999
Q ss_pred chHHHHHHHcCCChHHHHHHHHHHHH
Q 003747 571 SSAINIAERLGLPGIVVQNARQLYGA 596 (798)
Q Consensus 571 S~a~~iA~~~gl~~~ii~~A~~~~~~ 596 (798)
|||+++|+++|+|++|+++|++++..
T Consensus 959 Sygi~vA~l~Glp~~vi~rA~~~~~~ 984 (1022)
T 2o8b_B 959 SYGFNAARLANLPEEVIQKGHRKARE 984 (1022)
T ss_dssp CHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998743
No 6
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.87 E-value=3.7e-22 Score=205.99 Aligned_cols=156 Identities=17% Similarity=0.232 Sum_probs=111.4
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-------------------------cccccccccc--
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-------------------------SGLHILSSEY-- 447 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-------------------------~G~~vpa~~~-- 447 (798)
+..++++++|+ +.|++++|+||||||||||||+|+++..... .| ++|....
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~v~q~~~l~ 94 (224)
T 2pcj_A 16 GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLG-FVFQFHYLI 94 (224)
T ss_dssp TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEE-EECSSCCCC
T ss_pred CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEE-EEecCcccC
Confidence 35689999999 8899999999999999999999976532110 11 2222100
Q ss_pred cccchhh---------------------HHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 448 AKVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 448 ~~i~~~~---------------------~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
..+.+.+ .++..++..+......+++|++++ ++..+.+++.+|++|||||||+|||+.
T Consensus 95 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~ 174 (224)
T 2pcj_A 95 PELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSA 174 (224)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHH
T ss_pred CCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHH
Confidence 0011111 123334444444455667886664 566666789999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
....+. .++..+.+.|.| ||++|||.++..+|+++..+.+|.+..++
T Consensus 175 ~~~~~~-~~l~~l~~~g~t-vi~vtHd~~~~~~~d~v~~l~~G~i~~~g 221 (224)
T 2pcj_A 175 NTKRVM-DIFLKINEGGTS-IVMVTHERELAELTHRTLEMKDGKVVGEI 221 (224)
T ss_dssp HHHHHH-HHHHHHHHTTCE-EEEECSCHHHHTTSSEEEEEETTEEEEEE
T ss_pred HHHHHH-HHHHHHHHCCCE-EEEEcCCHHHHHhCCEEEEEECCEEEEEe
Confidence 766665 466667666887 99999998888899999999999987654
No 7
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.86 E-value=1e-21 Score=204.21 Aligned_cols=155 Identities=14% Similarity=0.219 Sum_probs=110.8
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-------------------------cccccccccc--c
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-------------------------SGLHILSSEY--A 448 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-------------------------~G~~vpa~~~--~ 448 (798)
..++++++|+ ..|++++|+||||||||||||+|+++..... .| ++|.... .
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~-~v~Q~~~l~~ 96 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIG-FVFQQFNLIP 96 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEE-EECTTCCCCT
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEE-EEecCCccCC
Confidence 4689999999 8999999999999999999999976532110 11 2222110 0
Q ss_pred ccchhhH------------------------HhhhcCchhhH-hhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCC
Q 003747 449 KVPWFDS------------------------VFADIGDEQSL-SQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGT 502 (798)
Q Consensus 449 ~i~~~~~------------------------i~~~ig~~~si-~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGl 502 (798)
.+.+.++ ++..++..+.. ....+.+|++++ ++..+.+++.+|++|||||||+||
T Consensus 97 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~L 176 (235)
T 3tif_A 97 LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWAL 176 (235)
T ss_dssp TSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTS
T ss_pred CCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 1111222 22333443332 445677886654 566667789999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHh-cCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 503 NPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 503 Dp~eg~al~~all~~L~~-~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
||.....+.. ++..+.+ .|.| ||++|||.++..+|+++..+.+|.+..+.
T Consensus 177 D~~~~~~i~~-~l~~l~~~~g~t-vi~vtHd~~~~~~~d~i~~l~~G~i~~~~ 227 (235)
T 3tif_A 177 DSKTGEKIMQ-LLKKLNEEDGKT-VVVVTHDINVARFGERIIYLKDGEVEREE 227 (235)
T ss_dssp CHHHHHHHHH-HHHHHHHHHCCE-EEEECSCHHHHTTSSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHH-HHHHHHHHcCCE-EEEEcCCHHHHHhCCEEEEEECCEEEEEc
Confidence 9977777755 6666654 4888 99999999988899999999999997654
No 8
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.86 E-value=9.6e-22 Score=209.24 Aligned_cols=155 Identities=16% Similarity=0.153 Sum_probs=113.2
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-----------------------cccccccccc---cc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----------------------SGLHILSSEY---AK 449 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-----------------------~G~~vpa~~~---~~ 449 (798)
..++++++|+ ..|++++|+||||||||||||+|+++..... .| ++|.... ..
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig-~v~Q~~~~~~~~ 99 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIG-IVFQDPDNQLFS 99 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEE-EECSSGGGTCCS
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEE-EEEcCccccccc
Confidence 4589999999 8899999999999999999999976532111 11 2232110 01
Q ss_pred cchhh---------------------HHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 450 VPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 450 i~~~~---------------------~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
..+.+ .++..++..+.......++|++++ ++..+.+++.+|++|||||||+||||...
T Consensus 100 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~ 179 (275)
T 3gfo_A 100 ASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGV 179 (275)
T ss_dssp SBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHH
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 11111 234445555555566678887665 56666678999999999999999999777
Q ss_pred HHHHHHHHHHHH-hcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 508 TALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 508 ~al~~all~~L~-~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
..+. .++..+. +.|.| ||++|||+++. .+|+++..+.+|.+.+++
T Consensus 180 ~~i~-~~l~~l~~~~g~t-vi~vtHdl~~~~~~~drv~~l~~G~i~~~g 226 (275)
T 3gfo_A 180 SEIM-KLLVEMQKELGIT-IIIATHDIDIVPLYCDNVFVMKEGRVILQG 226 (275)
T ss_dssp HHHH-HHHHHHHHHHCCE-EEEEESCCSSGGGGCSEEEEEETTEEEEEE
T ss_pred HHHH-HHHHHHHhhCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 7765 4666676 56888 99999998877 589999999999998764
No 9
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.85 E-value=1.2e-21 Score=207.51 Aligned_cols=157 Identities=13% Similarity=0.076 Sum_probs=112.1
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------cccccccc--ccc
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY--AKV 450 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~--~~i 450 (798)
++..++++++|+ ..|++++|+||||||||||||+|+++..... | .++|.... ..+
T Consensus 22 ~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~-G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSH-GECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSS-CEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC-cEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 346799999999 8899999999999999999999976532211 1 11221000 011
Q ss_pred chh-------------------hHHhhhcCchhhHhhhhhhhhHHHHH-HHHHHHhCC------CCeEEEEecCCCCCCh
Q 003747 451 PWF-------------------DSVFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQST------SQSLVLLDEIGAGTNP 504 (798)
Q Consensus 451 ~~~-------------------~~i~~~ig~~~si~~~lstfs~~~~r-i~~il~~a~------~psLLLLDEP~sGlDp 504 (798)
.+. ..++..++..+........+|+++++ +..+.+++. +|++|||||||+||||
T Consensus 101 tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~ 180 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDL 180 (266)
T ss_dssp BHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCH
T ss_pred CHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCH
Confidence 111 22344455555555666778877654 555556677 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc-CCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 505 LEGTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 505 ~eg~al~~all~~L~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
.....+.. ++..+.+. |.| ||++|||.++. .+|+++..+.+|++..++
T Consensus 181 ~~~~~i~~-~l~~l~~~~~~t-vi~vtHdl~~~~~~~d~v~vl~~G~i~~~g 230 (266)
T 4g1u_C 181 YHQQHTLR-LLRQLTRQEPLA-VCCVLHDLNLAALYADRIMLLAQGKLVACG 230 (266)
T ss_dssp HHHHHHHH-HHHHHHHHSSEE-EEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHH-HHHHHHHcCCCE-EEEEEcCHHHHHHhCCEEEEEECCEEEEEc
Confidence 77777654 66667655 457 99999998876 599999999999998764
No 10
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.85 E-value=2.2e-21 Score=204.85 Aligned_cols=156 Identities=15% Similarity=0.216 Sum_probs=112.5
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc----------------------------------ccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK----------------------------------SGL 440 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq----------------------------------~G~ 440 (798)
+..++.+++|+ ..|++++|+||||||||||||+|+++..... .|
T Consensus 18 ~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~- 96 (262)
T 1b0u_A 18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT- 96 (262)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEE-
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceE-
Confidence 45689999999 8999999999999999999999976532110 11
Q ss_pred ccccccc--cccchh----------------------hHHhhhcCchhh-HhhhhhhhhHHHH-HHHHHHHhCCCCeEEE
Q 003747 441 HILSSEY--AKVPWF----------------------DSVFADIGDEQS-LSQSLSTFSGHLK-QIGNIISQSTSQSLVL 494 (798)
Q Consensus 441 ~vpa~~~--~~i~~~----------------------~~i~~~ig~~~s-i~~~lstfs~~~~-ri~~il~~a~~psLLL 494 (798)
++|.... ..+.+. ..++..+|..+. .....+++|++++ ++..+.+++.+|++||
T Consensus 97 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lll 176 (262)
T 1b0u_A 97 MVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL 176 (262)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2222100 001111 123344555555 5666778887665 5666667799999999
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 495 LDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 495 LDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|||||+||||.....+.. ++..+.+.|.| ||++|||.+.. .+|+++..+.+|++..++
T Consensus 177 LDEPts~LD~~~~~~~~~-~l~~l~~~g~t-vi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 235 (262)
T 1b0u_A 177 FDEPTSALDPELVGEVLR-IMQQLAEEGKT-MVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235 (262)
T ss_dssp EESTTTTSCHHHHHHHHH-HHHHHHHTTCC-EEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred EeCCCccCCHHHHHHHHH-HHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999977777654 66667766888 99999998876 589999999999987653
No 11
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.85 E-value=2.8e-21 Score=203.64 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=112.0
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc--------------------cccccccccc--cccch
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEY--AKVPW 452 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq--------------------~G~~vpa~~~--~~i~~ 452 (798)
+..++++++|+ ..|++++|+||||||||||||+|+++..... .| ++|.... ..+.+
T Consensus 27 ~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~-~v~q~~~l~~~ltv 105 (256)
T 1vpl_A 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS-YLPEEAGAYRNMQG 105 (256)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE-EECTTCCCCTTSBH
T ss_pred CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEE-EEcCCCCCCCCCcH
Confidence 45789999999 8999999999999999999999976532111 11 2222110 00111
Q ss_pred hh---------------------HHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Q 003747 453 FD---------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 510 (798)
Q Consensus 453 ~~---------------------~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al 510 (798)
.+ .++..++..+......+++|++++ ++..+.+++.+|++|||||||+||||.....+
T Consensus 106 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l 185 (256)
T 1vpl_A 106 IEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 185 (256)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHH
Confidence 11 223344555555566677887665 56666678999999999999999999777776
Q ss_pred HHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 511 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 511 ~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
. .++..+.+.|.| ||++|||.+.. .+|+++..+.+|.+.+++
T Consensus 186 ~-~~l~~l~~~g~t-iiivtHd~~~~~~~~d~v~~l~~G~i~~~g 228 (256)
T 1vpl_A 186 R-KILKQASQEGLT-ILVSSHNMLEVEFLCDRIALIHNGTIVETG 228 (256)
T ss_dssp H-HHHHHHHHTTCE-EEEEECCHHHHTTTCSEEEEEETTEEEEEE
T ss_pred H-HHHHHHHhCCCE-EEEEcCCHHHHHHHCCEEEEEECCEEEEec
Confidence 5 466667767887 99999998876 479999999999987643
No 12
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.85 E-value=3e-21 Score=212.37 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=113.9
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-----cc-----------------ccccccccc---c
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-----------------LHILSSEYA---K 449 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-----~G-----------------~~vpa~~~~---~ 449 (798)
+..++.+++|+ ..|++++|+||||||||||||+|+++..... .| .+++. ... .
T Consensus 16 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ-~~~l~p~ 94 (359)
T 3fvq_A 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQ-EGVLFPH 94 (359)
T ss_dssp TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECT-TCCCCTT
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeC-CCcCCCC
Confidence 45789999999 8999999999999999999999977542211 01 01111 000 0
Q ss_pred cchhh---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 450 VPWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 450 i~~~~---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
+.+.+ .++..++..+........+|+++ +|+..+.+++.+|++|||||||+|||+...
T Consensus 95 ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r 174 (359)
T 3fvq_A 95 LTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLR 174 (359)
T ss_dssp SCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred CCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 11111 22334455555555667788665 566666778999999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 508 TALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 508 ~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
..+...+.+.+.+.|.| +|++|||.+.+ .+||++..+.+|.+...+
T Consensus 175 ~~l~~~l~~~~~~~g~t-vi~vTHd~~ea~~~aDri~vl~~G~i~~~g 221 (359)
T 3fvq_A 175 RQIREDMIAALRANGKS-AVFVSHDREEALQYADRIAVMKQGRILQTA 221 (359)
T ss_dssp HHHHHHHHHHHHHTTCE-EEEECCCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhCCCE-EEEEeCCHHHHHHHCCEEEEEECCEEEEEe
Confidence 88766566666677888 99999998776 689999999999997654
No 13
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.85 E-value=3.5e-21 Score=203.63 Aligned_cols=157 Identities=16% Similarity=0.241 Sum_probs=110.7
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-----cc-----------------cccccccc--ccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-----------------LHILSSEY--AKV 450 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-----~G-----------------~~vpa~~~--~~i 450 (798)
+..++++++|+ ..|++++|+||||||||||||+|+++..... .| .++|.... ..+
T Consensus 36 ~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~ 115 (263)
T 2olj_A 36 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHM 115 (263)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTS
T ss_pred CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCC
Confidence 45689999999 8999999999999999999999976532110 00 12222100 001
Q ss_pred chhh----------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 451 PWFD----------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 451 ~~~~----------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
.+.+ .++..++..+......+++|+++ +++..+.+++.+|++|||||||+||||...
T Consensus 116 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~ 195 (263)
T 2olj_A 116 TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMV 195 (263)
T ss_dssp CHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHH
Confidence 1111 12333444444445556778666 456666678999999999999999999776
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 508 TALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 508 ~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
..+. .++..+.+.|.| ||++|||.+.. .+|+++..+.+|.+..++
T Consensus 196 ~~~~-~~l~~l~~~g~t-vi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 241 (263)
T 2olj_A 196 GEVL-SVMKQLANEGMT-MVVVTHEMGFAREVGDRVLFMDGGYIIEEG 241 (263)
T ss_dssp HHHH-HHHHHHHHTTCE-EEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHH-HHHHHHHhCCCE-EEEEcCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 6665 466667666887 99999998876 589999999999987653
No 14
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.85 E-value=3e-21 Score=201.25 Aligned_cols=156 Identities=15% Similarity=0.180 Sum_probs=107.8
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc----------------------cccccccccc--ccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK----------------------SGLHILSSEY--AKV 450 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq----------------------~G~~vpa~~~--~~i 450 (798)
+..++++++|+ +.|++++|+||||||||||||+|+++..... .| ++|.... ..+
T Consensus 18 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~l~~~l 96 (240)
T 1ji0_A 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA-LVPEGRRIFPEL 96 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE-EECSSCCCCTTS
T ss_pred CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE-EEecCCccCCCC
Confidence 35689999999 8899999999999999999999976532110 11 2222100 011
Q ss_pred chhhHH--------------------hhhc-CchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHH
Q 003747 451 PWFDSV--------------------FADI-GDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 508 (798)
Q Consensus 451 ~~~~~i--------------------~~~i-g~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~ 508 (798)
.+.+.+ +..+ +..+......+++|+++ +++..+.+++.+|++|||||||+||||....
T Consensus 97 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~ 176 (240)
T 1ji0_A 97 TVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVS 176 (240)
T ss_dssp BHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHH
T ss_pred cHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHH
Confidence 111221 2222 12222333345677655 5666667789999999999999999997777
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecchhH-HhhhccccceeeeEEEEec
Q 003747 509 ALGMSLLEAFAESGSLLTIATTHHGEL-KTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 509 al~~all~~L~~~g~t~VIitTHd~el-~~~a~~~~~l~ng~v~fd~ 554 (798)
.+.. ++..+.+.|.| ||++|||.+. ..+|+++..+.+|++..++
T Consensus 177 ~l~~-~l~~~~~~g~t-vi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 221 (240)
T 1ji0_A 177 EVFE-VIQKINQEGTT-ILLVEQNALGALKVAHYGYVLETGQIVLEG 221 (240)
T ss_dssp HHHH-HHHHHHHTTCC-EEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHH-HHHHHHHCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEEc
Confidence 7654 66667667888 9999999865 4799999999999987643
No 15
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.84 E-value=2.7e-21 Score=203.50 Aligned_cols=155 Identities=13% Similarity=0.101 Sum_probs=109.4
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc----------------------cccccccccc--ccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK----------------------SGLHILSSEY--AKV 450 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq----------------------~G~~vpa~~~--~~i 450 (798)
+..++++++|+ +.|++++|+||||||||||||+|+++..... .| ++|.... ..+
T Consensus 19 ~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~l~~~~ 97 (257)
T 1g6h_A 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV-RTFQTPQPLKEM 97 (257)
T ss_dssp TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE-ECCCCCGGGGGS
T ss_pred CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE-EEccCCccCCCC
Confidence 45689999999 8899999999999999999999976532110 11 2221000 001
Q ss_pred chhh----------------------------------HHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEE
Q 003747 451 PWFD----------------------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLL 495 (798)
Q Consensus 451 ~~~~----------------------------------~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLL 495 (798)
.+.+ .++..+|..+......+++|++++ ++..+.+++.+|++|||
T Consensus 98 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllL 177 (257)
T 1g6h_A 98 TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVM 177 (257)
T ss_dssp BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred cHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 1111 223334444444455667786665 55666677999999999
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 496 DEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 496 DEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
||||+||||.....+.. ++..+.+.|.| ||++|||.+.. .+|+++..+.+|.+..+
T Consensus 178 DEPts~LD~~~~~~l~~-~l~~l~~~g~t-vi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (257)
T 1g6h_A 178 DEPIAGVAPGLAHDIFN-HVLELKAKGIT-FLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234 (257)
T ss_dssp ESTTTTCCHHHHHHHHH-HHHHHHHTTCE-EEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred eCCccCCCHHHHHHHHH-HHHHHHHCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999977777654 66667766887 99999998765 58999999999998764
No 16
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.84 E-value=4.3e-21 Score=211.40 Aligned_cols=155 Identities=14% Similarity=0.174 Sum_probs=113.3
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc------------------------cccccccccc--cc
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK------------------------SGLHILSSEY--AK 449 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq------------------------~G~~vpa~~~--~~ 449 (798)
..++++++|+ +.|++++|+||||||||||||+|+++..... .| ++|.... ..
T Consensus 41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig-~v~Q~~~l~~~ 119 (366)
T 3tui_C 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIG-MIFQHFNLLSS 119 (366)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEE-EECSSCCCCTT
T ss_pred eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEE-EEeCCCccCCC
Confidence 4589999999 8999999999999999999999976532211 11 2222100 01
Q ss_pred cchhh---------------------HHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHH
Q 003747 450 VPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEG 507 (798)
Q Consensus 450 i~~~~---------------------~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg 507 (798)
+.+.+ .++..+|..+......+.+|++++ |+..+.+++.+|++|||||||+||||...
T Consensus 120 ~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~ 199 (366)
T 3tui_C 120 RTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATT 199 (366)
T ss_dssp SCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 11111 234445665555666678887665 56666678999999999999999999877
Q ss_pred HHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 508 TALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 508 ~al~~all~~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
..+.. ++..+.+ .|.| ||++|||++.. .+|+++..+.+|.+..++
T Consensus 200 ~~i~~-lL~~l~~~~g~T-ii~vTHdl~~~~~~aDrv~vl~~G~iv~~g 246 (366)
T 3tui_C 200 RSILE-LLKDINRRLGLT-ILLITHEMDVVKRICDCVAVISNGELIEQD 246 (366)
T ss_dssp HHHHH-HHHHHHHHSCCE-EEEEESCHHHHHHHCSEEEEEETTEEEECC
T ss_pred HHHHH-HHHHHHHhCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEEc
Confidence 77755 6666654 4888 99999998877 589999999999998754
No 17
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.83 E-value=9e-21 Score=209.94 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=112.9
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc-------------------cccccccc---ccch
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------HILSSEYA---KVPW 452 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~-------------------~vpa~~~~---~i~~ 452 (798)
+..++.+++|+ ..|++++|+||||||||||||+|+++..... |. +++. ... .+.+
T Consensus 15 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~-G~I~i~G~~~~~~~~~~r~ig~VfQ-~~~l~p~ltV 92 (381)
T 3rlf_A 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS-GDLFIGEKRMNDTPPAERGVGMVFQ-SYALYPHLSV 92 (381)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE-EEEEETTEECTTCCGGGSCEEEECT-TCCCCTTSCH
T ss_pred CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCC-eEEEECCEECCCCCHHHCCEEEEec-CCcCCCCCCH
Confidence 45789999999 8999999999999999999999977543211 10 1111 000 0111
Q ss_pred h---------------------hHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Q 003747 453 F---------------------DSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 510 (798)
Q Consensus 453 ~---------------------~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al 510 (798)
. ..++..++..+......+.+|++++ ++..+.+++.+|++|||||||+|||+.....+
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l 172 (381)
T 3rlf_A 93 AENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172 (381)
T ss_dssp HHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH
Confidence 1 1234445565555666778887665 56666677899999999999999999777777
Q ss_pred HHHHHHHHH-hcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 511 GMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 511 ~~all~~L~-~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
.. ++..+. +.|.| +|++|||.+.+ .+||++..+.+|.+...+
T Consensus 173 ~~-~l~~l~~~~g~t-ii~vTHd~~ea~~~aDri~vl~~G~i~~~g 216 (381)
T 3rlf_A 173 RI-EISRLHKRLGRT-MIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216 (381)
T ss_dssp HH-HHHHHHHHHCCE-EEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HH-HHHHHHHhCCCE-EEEEECCHHHHHHhCCEEEEEECCEEEEEe
Confidence 65 555564 45888 99999998766 699999999999997654
No 18
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.83 E-value=1.3e-20 Score=198.07 Aligned_cols=154 Identities=15% Similarity=0.060 Sum_probs=110.6
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc--------ccccccccc--ccch------------
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYA--KVPW------------ 452 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G--------~~vpa~~~~--~i~~------------ 452 (798)
+..++++++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... ...+
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 95 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI-QGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHI 95 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS-EEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGS
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhc
Confidence 35789999999 889999999999999999999997653221 11 122221000 0111
Q ss_pred -------------hhHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHH
Q 003747 453 -------------FDSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 518 (798)
Q Consensus 453 -------------~~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L 518 (798)
...++..+|..+......+++|++++ ++..+.+++.+|++|||||||+|||+.....+.. ++..+
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~l 174 (253)
T 2nq2_C 96 NTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLS-LLIDL 174 (253)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHH-HHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 12234445555555566677887664 5666667899999999999999999977777654 66666
Q ss_pred Hhc-CCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 519 AES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 519 ~~~-g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
.+. |.| ||++|||.+.. .+|+++..+.+|. ..+
T Consensus 175 ~~~~g~t-vi~vtHd~~~~~~~~d~v~~l~~G~-~~~ 209 (253)
T 2nq2_C 175 AQSQNMT-VVFTTHQPNQVVAIANKTLLLNKQN-FKF 209 (253)
T ss_dssp HHTSCCE-EEEEESCHHHHHHHCSEEEEEETTE-EEE
T ss_pred HHhcCCE-EEEEecCHHHHHHhCCEEEEEeCCe-Eec
Confidence 655 887 99999998876 6899999999998 543
No 19
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.83 E-value=1.5e-20 Score=206.63 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=110.6
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-------------------ccccccccc--ccccchh
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-------------------SGLHILSSE--YAKVPWF 453 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-------------------~G~~vpa~~--~~~i~~~ 453 (798)
+..++.+++|+ +.|++++|+||||||||||||+|+++..... .| ++|... ...+.+.
T Consensus 27 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig-~v~Q~~~l~~~ltv~ 105 (355)
T 1z47_A 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG-LVFQNYALFQHMTVY 105 (355)
T ss_dssp STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEE-EECGGGCCCTTSCHH
T ss_pred CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEE-EEecCcccCCCCCHH
Confidence 35689999999 8899999999999999999999976542211 11 122100 0001111
Q ss_pred ---------------------hHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHH
Q 003747 454 ---------------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 511 (798)
Q Consensus 454 ---------------------~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~ 511 (798)
..++..+++.+......+++|+++ +|+..+.+++.+|++|||||||+|||+.....+.
T Consensus 106 eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~ 185 (355)
T 1z47_A 106 DNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELR 185 (355)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 123344555555555667788665 5666667889999999999999999997777775
Q ss_pred HHHHHHHH-hcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 512 MSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 512 ~all~~L~-~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
. ++..+. +.|.| +|++|||.+.+ .+|+++..+.+|.+...
T Consensus 186 ~-~l~~l~~~~g~t-vi~vTHd~~~a~~~adri~vl~~G~i~~~ 227 (355)
T 1z47_A 186 T-FVRQVHDEMGVT-SVFVTHDQEEALEVADRVLVLHEGNVEQF 227 (355)
T ss_dssp H-HHHHHHHHHTCE-EEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred H-HHHHHHHhcCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 5 555555 45888 99999998776 68999999999998754
No 20
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.83 E-value=2e-20 Score=206.01 Aligned_cols=156 Identities=13% Similarity=0.144 Sum_probs=111.6
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-------------------ccccccccc--ccccchh
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-------------------SGLHILSSE--YAKVPWF 453 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-------------------~G~~vpa~~--~~~i~~~ 453 (798)
+..++++++|+ +.|++++|+||||||||||||+|+++..... .| ++|... ...+.+.
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig-~v~Q~~~l~~~ltv~ 93 (359)
T 2yyz_A 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVG-MVFQNYALYPHMTVF 93 (359)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEE-EECSSCCCCTTSCHH
T ss_pred CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEE-EEecCcccCCCCCHH
Confidence 35689999999 8899999999999999999999976542211 11 112100 0001111
Q ss_pred ---------------------hHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHH
Q 003747 454 ---------------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 511 (798)
Q Consensus 454 ---------------------~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~ 511 (798)
..++..++..+......+++|+++ +|+..+.+++.+|++|||||||+|||+.....+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~ 173 (359)
T 2yyz_A 94 ENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMR 173 (359)
T ss_dssp HHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 223444555555556667788765 5666677889999999999999999997777775
Q ss_pred HHHHHHHH-hcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 512 MSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 512 ~all~~L~-~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
. ++..+. +.|.| +|++|||.+.+ .+|+++..+.+|++...+
T Consensus 174 ~-~l~~l~~~~g~t-vi~vTHd~~~~~~~adri~vl~~G~i~~~g 216 (359)
T 2yyz_A 174 A-EIKHLQQELGIT-SVYVTHDQAEAMTMASRIAVFNQGKLVQYG 216 (359)
T ss_dssp H-HHHHHHHHHCCE-EEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred H-HHHHHHHhcCCE-EEEEcCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 5 555554 45888 99999998776 699999999999987543
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.83 E-value=1.4e-20 Score=199.23 Aligned_cols=155 Identities=16% Similarity=0.127 Sum_probs=112.3
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc------------------ccccccccccc---cccch--
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA------------------KSGLHILSSEY---AKVPW-- 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a------------------q~G~~vpa~~~---~~i~~-- 452 (798)
..++++++|+ ..|++++|+||||||||||||+|+++.... ..| ++|.... ....+
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~-~v~q~~~~~~~~~tv~e 98 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG-IAFQYPEDQFFAERVFD 98 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE-EECSSGGGGCCCSSHHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE-EEeccchhhcCCCcHHH
Confidence 4689999999 899999999999999999999997653211 111 2332100 00111
Q ss_pred ------------------hhHHhhhcCch--hhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHH
Q 003747 453 ------------------FDSVFADIGDE--QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 511 (798)
Q Consensus 453 ------------------~~~i~~~ig~~--~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~ 511 (798)
+..++..+|.. +......+++|++++ ++..+.+++.+|++|||||||+|||+.....+.
T Consensus 99 nl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~ 178 (266)
T 2yz2_A 99 EVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLL 178 (266)
T ss_dssp HHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHH
Confidence 12234455665 555666778887665 566666789999999999999999997766665
Q ss_pred HHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 512 MSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 512 ~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
.++..+.+.|.| ||++|||.+.. .+|+++..+.+|.+..++
T Consensus 179 -~~l~~l~~~g~t-ii~vtHd~~~~~~~~d~v~~l~~G~i~~~g 220 (266)
T 2yz2_A 179 -RIVEKWKTLGKT-VILISHDIETVINHVDRVVVLEKGKKVFDG 220 (266)
T ss_dssp -HHHHHHHHTTCE-EEEECSCCTTTGGGCSEEEEEETTEEEEEE
T ss_pred -HHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 466667656887 99999998776 489999999999987654
No 22
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.83 E-value=1.7e-20 Score=196.51 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=106.8
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc---------------------ccccccccccc-ccch
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK---------------------SGLHILSSEYA-KVPW 452 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq---------------------~G~~vpa~~~~-~i~~ 452 (798)
+..++++++|+ ..|++++|+||||||||||||+|+++..... .| ++|..... ...+
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~-~v~Q~~~l~~~tv 99 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG-VVLQDNVLLNRSI 99 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE-EECSSCCCTTSBH
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE-EEeCCCccccccH
Confidence 35689999999 8899999999999999999999976532111 11 22221000 0111
Q ss_pred hhHH---------------hhhcCchhhHhh-----------hhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 453 FDSV---------------FADIGDEQSLSQ-----------SLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 453 ~~~i---------------~~~ig~~~si~~-----------~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
.+.+ +..++..+.+.. ..+.+|+++ +++..+.+++.+|++|||||||+|||+.
T Consensus 100 ~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~ 179 (247)
T 2ff7_A 100 IDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179 (247)
T ss_dssp HHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHH
T ss_pred HHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 2222 112222222221 125677665 5666667789999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
....+.. ++..+. .|.| ||++||+.+....|+++..+.+|.+..++
T Consensus 180 ~~~~i~~-~l~~~~-~g~t-viivtH~~~~~~~~d~v~~l~~G~i~~~g 225 (247)
T 2ff7_A 180 SEHVIMR-NMHKIC-KGRT-VIIIAHRLSTVKNADRIIVMEKGKIVEQG 225 (247)
T ss_dssp HHHHHHH-HHHHHH-TTSE-EEEECSSGGGGTTSSEEEEEETTEEEEEE
T ss_pred HHHHHHH-HHHHHc-CCCE-EEEEeCCHHHHHhCCEEEEEECCEEEEEC
Confidence 7777655 555664 5887 99999999888789999999999987653
No 23
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.83 E-value=1.4e-20 Score=197.47 Aligned_cols=153 Identities=18% Similarity=0.167 Sum_probs=110.3
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------ccccccc--cccchh
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEY--AKVPWF 453 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~--~~i~~~ 453 (798)
.++++++|+ ..|++++|+||||||||||||+|+++.... |. ++|.... ..+.+.
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK--GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 578999999 889999999999999999999997764221 21 2222100 001111
Q ss_pred ----------------hHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCe-------EEEEecCCCCCChHHHHH
Q 003747 454 ----------------DSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQS-------LVLLDEIGAGTNPLEGTA 509 (798)
Q Consensus 454 ----------------~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~ps-------LLLLDEP~sGlDp~eg~a 509 (798)
..++..++..+.......++|++++ ++..+.+++.+|+ +|||||||+|||+.....
T Consensus 92 e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~ 171 (249)
T 2qi9_C 92 HYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSA 171 (249)
T ss_dssp HHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHH
T ss_pred HHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHH
Confidence 1233445555555556677887665 5566667788999 999999999999977777
Q ss_pred HHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 510 LGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 510 l~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
+.. ++..+.+.|.| ||++|||.++. .+|+++..+.+|.+..++
T Consensus 172 l~~-~l~~l~~~g~t-viivtHd~~~~~~~~d~v~~l~~G~i~~~g 215 (249)
T 2qi9_C 172 LDK-ILSALSQQGLA-IVMSSHDLNHTLRHAHRAWLLKGGKMLASG 215 (249)
T ss_dssp HHH-HHHHHHHTTCE-EEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHH-HHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 654 66667666887 99999998887 699999999999987643
No 24
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.83 E-value=2e-20 Score=195.23 Aligned_cols=152 Identities=15% Similarity=0.136 Sum_probs=107.1
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-------------------cccccccccc--cccchh---
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-------------------SGLHILSSEY--AKVPWF--- 453 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-------------------~G~~vpa~~~--~~i~~~--- 453 (798)
++.+++|+ +. ++++|+||||||||||||+|+++..... .| ++|.... ..+.+.
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~-~v~q~~~l~~~ltv~enl 91 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIG-FVPQDYALFPHLSVYRNI 91 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCB-CCCSSCCCCTTSCHHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEE-EEcCCCccCCCCcHHHHH
Confidence 48899998 77 9999999999999999999976532111 11 2222100 001111
Q ss_pred ----------------hHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHH
Q 003747 454 ----------------DSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE 516 (798)
Q Consensus 454 ----------------~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~ 516 (798)
..++..++..+......+++|++++ ++..+.+++.+|++|||||||+||||.....+.. ++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~-~l~ 170 (240)
T 2onk_A 92 AYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLME-ELR 170 (240)
T ss_dssp HTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHH-HHH
T ss_pred HHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHH
Confidence 1233444554444555677887665 5666667899999999999999999977766654 666
Q ss_pred HHHh-cCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 517 AFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 517 ~L~~-~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
.+.+ .|.| ||++|||.+.. .+|+++..+.+|++..++
T Consensus 171 ~l~~~~g~t-vi~vtHd~~~~~~~~d~i~~l~~G~i~~~g 209 (240)
T 2onk_A 171 FVQREFDVP-ILHVTHDLIEAAMLADEVAVMLNGRIVEKG 209 (240)
T ss_dssp HHHHHHTCC-EEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 6654 4888 99999998765 689999999999987654
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.82 E-value=2e-20 Score=199.48 Aligned_cols=157 Identities=17% Similarity=0.088 Sum_probs=110.0
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-----cc-----------------cccccccc--c--
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-----------------LHILSSEY--A-- 448 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-----~G-----------------~~vpa~~~--~-- 448 (798)
+..++.+++|+ ..|++++|+||||||||||||+|+++..... .| .++|.... .
T Consensus 33 ~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 112 (279)
T 2ihy_A 33 GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQE 112 (279)
T ss_dssp TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCT
T ss_pred CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCC
Confidence 35689999999 8899999999999999999999976532111 00 01221000 0
Q ss_pred ccchhh-------------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCC
Q 003747 449 KVPWFD-------------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGT 502 (798)
Q Consensus 449 ~i~~~~-------------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGl 502 (798)
.+.+.+ .++..+|..+......+++|+++ +++..+.+++.+|++|||||||+||
T Consensus 113 ~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~L 192 (279)
T 2ihy_A 113 GERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGL 192 (279)
T ss_dssp TSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTC
T ss_pred CCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccc
Confidence 001111 12333444444445566778665 4566666779999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcEE--EEEecchhHH-hhhccccceeeeEEEEec
Q 003747 503 NPLEGTALGMSLLEAFAESGSLLT--IATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 503 Dp~eg~al~~all~~L~~~g~t~V--IitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
|+.....+.. ++..+.+.|.| | |++|||.+.. .+|+++..+.+|.+.+++
T Consensus 193 D~~~~~~l~~-~l~~l~~~g~t-v~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 193 DFIARESLLS-ILDSLSDSYPT-LAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp CHHHHHHHHH-HHHHHHHHCTT-CEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred CHHHHHHHHH-HHHHHHHCCCE-EEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9977777654 66666666888 8 9999998776 689999999999987653
No 26
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.82 E-value=2.3e-20 Score=205.68 Aligned_cols=157 Identities=15% Similarity=0.136 Sum_probs=110.7
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-----cc-------------ccccccc--ccccchhh
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-------------LHILSSE--YAKVPWFD 454 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-----~G-------------~~vpa~~--~~~i~~~~ 454 (798)
+..++.+++|+ +.|++++|+||||||||||||+|+++..... .| .++|... ...+.+.+
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 94 (362)
T 2it1_A 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYK 94 (362)
T ss_dssp SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHH
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHH
Confidence 35689999999 8899999999999999999999976542211 00 0122100 00011111
Q ss_pred ---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHH
Q 003747 455 ---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 512 (798)
Q Consensus 455 ---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~ 512 (798)
+++..++..+......+++|+++ +|+..+.+++.+|++|||||||+|||+.....+..
T Consensus 95 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~ 174 (362)
T 2it1_A 95 NIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRA 174 (362)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 22334444444455566788665 56666778899999999999999999977777755
Q ss_pred HHHHHHH-hcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 513 SLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 513 all~~L~-~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
++..+. +.|.| +|++|||.+.+ .+|+++..+.+|++...+
T Consensus 175 -~l~~l~~~~g~t-vi~vTHd~~~a~~~adri~vl~~G~i~~~g 216 (362)
T 2it1_A 175 -ELKRLQKELGIT-TVYVTHDQAEALAMADRIAVIREGEILQVG 216 (362)
T ss_dssp -HHHHHHHHHTCE-EEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred -HHHHHHHhCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 555564 45888 99999998765 699999999999997643
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.82 E-value=1.3e-20 Score=199.93 Aligned_cols=155 Identities=12% Similarity=0.102 Sum_probs=105.7
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc---------------------cccccccccc-cccchh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK---------------------SGLHILSSEY-AKVPWF 453 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq---------------------~G~~vpa~~~-~~i~~~ 453 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++..... .| ++|.... ....+.
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~-~v~Q~~~l~~~tv~ 110 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVA-AVGQEPLLFGRSFR 110 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEE-EECSSCCCCSSBHH
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEE-EEecCCccccccHH
Confidence 5689999999 8999999999999999999999976532111 11 2222100 001122
Q ss_pred hHHhh-------------------------hc--CchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 454 DSVFA-------------------------DI--GDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 454 ~~i~~-------------------------~i--g~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
+.+.. .+ |....+....+++|+++ +++..+.+++.+|+||||||||+|||+.
T Consensus 111 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~ 190 (271)
T 2ixe_A 111 ENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG 190 (271)
T ss_dssp HHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHH
T ss_pred HHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 22211 01 11111123345677655 5666777889999999999999999997
Q ss_pred HHHHHHHHHHHHHHh-cCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 506 EGTALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 506 eg~al~~all~~L~~-~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
....+.. ++..+.. .|.| ||++|||.++...|+++..+.+|.+..++
T Consensus 191 ~~~~i~~-~l~~~~~~~g~t-viivtHd~~~~~~~d~v~~l~~G~i~~~g 238 (271)
T 2ixe_A 191 NQLRVQR-LLYESPEWASRT-VLLITQQLSLAERAHHILFLKEGSVCEQG 238 (271)
T ss_dssp HHHHHHH-HHHHCTTTTTSE-EEEECSCHHHHTTCSEEEEEETTEEEEEE
T ss_pred HHHHHHH-HHHHHHhhcCCE-EEEEeCCHHHHHhCCEEEEEECCEEEEEC
Confidence 7666654 5555543 4787 99999999888789999999999887543
No 28
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.82 E-value=1.6e-20 Score=196.85 Aligned_cols=156 Identities=16% Similarity=0.135 Sum_probs=104.0
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhh-hhcccc----------------------ccccccccc--c
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-MMAKSG----------------------LHILSSEYA--K 449 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~-~~aq~G----------------------~~vpa~~~~--~ 449 (798)
+..++++++|+ ..|++++|+||||||||||||+|+++. +.+..| .++|..... .
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (250)
T 2d2e_A 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPG 94 (250)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCS
T ss_pred CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccC
Confidence 35689999999 889999999999999999999998751 111111 122221000 0
Q ss_pred cchhh------------------------HHhhhcCc-hhhHhhhhhh-hhHHHH-HHHHHHHhCCCCeEEEEecCCCCC
Q 003747 450 VPWFD------------------------SVFADIGD-EQSLSQSLST-FSGHLK-QIGNIISQSTSQSLVLLDEIGAGT 502 (798)
Q Consensus 450 i~~~~------------------------~i~~~ig~-~~si~~~lst-fs~~~~-ri~~il~~a~~psLLLLDEP~sGl 502 (798)
+.+.+ .++..+|. .+......++ +|++++ ++..+.+++.+|++|||||||+||
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~L 174 (250)
T 2d2e_A 95 VTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGL 174 (250)
T ss_dssp CBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTT
T ss_pred CCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC
Confidence 01111 11222344 2333444566 887665 556666778999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh-h-hccccceeeeEEEEe
Q 003747 503 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-L-KYSNDFFENACMEFD 553 (798)
Q Consensus 503 Dp~eg~al~~all~~L~~~g~t~VIitTHd~el~~-~-a~~~~~l~ng~v~fd 553 (798)
|+.....+. .++..+.+.|.| ||++|||.++.. + |+++..+.+|.+..+
T Consensus 175 D~~~~~~l~-~~l~~l~~~g~t-vi~vtHd~~~~~~~~~d~v~~l~~G~i~~~ 225 (250)
T 2d2e_A 175 DIDALKVVA-RGVNAMRGPNFG-ALVITHYQRILNYIQPDKVHVMMDGRVVAT 225 (250)
T ss_dssp CHHHHHHHH-HHHHHHCSTTCE-EEEECSSSGGGGTSCCSEEEEEETTEEEEE
T ss_pred CHHHHHHHH-HHHHHHHhcCCE-EEEEecCHHHHHHhcCCEEEEEECCEEEEE
Confidence 997776665 466666666887 999999988775 5 588888999988754
No 29
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.82 E-value=2.8e-20 Score=205.82 Aligned_cols=156 Identities=15% Similarity=0.189 Sum_probs=110.1
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-----cc-------------------ccccccccc--
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-------------------LHILSSEYA-- 448 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-----~G-------------------~~vpa~~~~-- 448 (798)
+..++.+++|+ ..|++++|+||||||||||||+|+++..... .| .++|. ...
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q-~~~l~ 93 (372)
T 1g29_1 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQ-SYALY 93 (372)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECS-CCCCC
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeC-CCccC
Confidence 35689999999 8899999999999999999999976542211 00 01111 000
Q ss_pred -ccchhh---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 449 -KVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 449 -~i~~~~---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
.+.+.+ .++..++..+......+++|+++ +|+..+.+++.+|++|||||||+|||+.
T Consensus 94 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~ 173 (372)
T 1g29_1 94 PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173 (372)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHH
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 011111 12333444444445566778665 5666677789999999999999999997
Q ss_pred HHHHHHHHHHHHHH-hcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 506 EGTALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 506 eg~al~~all~~L~-~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
....+.. ++..+. +.|.| +|++|||.+.+ .+|+++..+.+|++...+
T Consensus 174 ~r~~l~~-~l~~l~~~~g~t-vi~vTHd~~~a~~~adri~vl~~G~i~~~g 222 (372)
T 1g29_1 174 LRVRMRA-ELKKLQRQLGVT-TIYVTHDQVEAMTMGDRIAVMNRGVLQQVG 222 (372)
T ss_dssp HHHHHHH-HHHHHHHHHTCE-EEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHH-HHHHHHHhcCCE-EEEECCCHHHHHHhCCEEEEEeCCEEEEeC
Confidence 7777755 555554 45888 99999998776 699999999999997654
No 30
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.82 E-value=2.2e-20 Score=205.30 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=108.5
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-----cc------------------ccccccc--ccccch
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG------------------LHILSSE--YAKVPW 452 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-----~G------------------~~vpa~~--~~~i~~ 452 (798)
++++++|+ +.|++++|+||||||||||||+|+++..... .| .++|... ...+.+
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv 99 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTA 99 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCH
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCH
Confidence 89999999 8899999999999999999999976532211 00 0111100 000111
Q ss_pred hh---------------------HHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Q 003747 453 FD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 510 (798)
Q Consensus 453 ~~---------------------~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al 510 (798)
.+ .++..++..+......+++|+++ +|+..+.+++.+|++|||||||+|||+.....+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l 179 (353)
T 1oxx_K 100 FENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179 (353)
T ss_dssp HHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 11 22334455554555566788665 566667788999999999999999999877777
Q ss_pred HHHHHHHHH-hcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 511 GMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 511 ~~all~~L~-~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
.. ++..+. +.|.| +|++|||.+.+ .+|+++..+.+|++...
T Consensus 180 ~~-~l~~l~~~~g~t-vi~vTHd~~~~~~~adri~vl~~G~i~~~ 222 (353)
T 1oxx_K 180 RA-LVKEVQSRLGVT-LLVVSHDPADIFAIADRVGVLVKGKLVQV 222 (353)
T ss_dssp HH-HHHHHHHHHCCE-EEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 65 555554 45888 99999998766 68999999999998754
No 31
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.82 E-value=3e-20 Score=205.46 Aligned_cols=156 Identities=15% Similarity=0.134 Sum_probs=110.1
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc-------------------cccccc--ccccchh
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------HILSSE--YAKVPWF 453 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~-------------------~vpa~~--~~~i~~~ 453 (798)
+..++++++|+ ..|++++|+||||||||||||+|+++..... |. ++|... ...+.+.
T Consensus 23 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~-G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 101 (372)
T 1v43_A 23 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE-GRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVY 101 (372)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE-EEEEETTEECTTSCGGGGTEEEEEC------CCCHH
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCc-eEEEECCEECCCCChhhCcEEEEecCcccCCCCCHH
Confidence 45689999999 8899999999999999999999976542211 11 111100 0001111
Q ss_pred ---------------------hHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHH
Q 003747 454 ---------------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 511 (798)
Q Consensus 454 ---------------------~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~ 511 (798)
..++..++..+......+++|+++ +|+..+.+++.+|++|||||||+|||+.....+.
T Consensus 102 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~ 181 (372)
T 1v43_A 102 ENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMR 181 (372)
T ss_dssp HHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 123334455444455556677654 5677777889999999999999999997777776
Q ss_pred HHHHHHHH-hcCCcEEEEEecchhHH-hhhccccceeeeEEEEec
Q 003747 512 MSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 554 (798)
Q Consensus 512 ~all~~L~-~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd~ 554 (798)
. ++..+. +.|.| +|++|||.+.+ .+|+++..+.+|++...+
T Consensus 182 ~-~l~~l~~~~g~t-vi~vTHd~~~a~~~adri~vl~~G~i~~~g 224 (372)
T 1v43_A 182 A-EIKKLQQKLKVT-TIYVTHDQVEAMTMGDRIAVMNRGQLLQIG 224 (372)
T ss_dssp H-HHHHHHHHHTCE-EEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred H-HHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 5 555554 45888 99999998776 699999999999987643
No 32
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.82 E-value=3.2e-20 Score=203.58 Aligned_cols=151 Identities=16% Similarity=0.149 Sum_probs=109.2
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-------------------ccccccccccc---ccchh--
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-------------------SGLHILSSEYA---KVPWF-- 453 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-------------------~G~~vpa~~~~---~i~~~-- 453 (798)
++++++|+ +.|++++|+||||||||||||+|+++..... .| ++|. ... .+.+.
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig-~v~Q-~~~l~~~ltv~en 92 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA-FVYQ-NYSLFPHMNVKKN 92 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCE-EECT-TCCCCTTSCHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEE-EEec-CcccCCCCCHHHH
Confidence 89999999 8999999999999999999999976542211 11 2221 110 01111
Q ss_pred ----------------hHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHH
Q 003747 454 ----------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE 516 (798)
Q Consensus 454 ----------------~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~ 516 (798)
..++..++..+......+++|+++ +|+..+.+++.+|++|||||||+|||+.....+.. +++
T Consensus 93 l~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~-~l~ 171 (348)
T 3d31_A 93 LEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE-MLS 171 (348)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHH-HHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH-HHH
Confidence 223344555555555667788665 56666677899999999999999999977777655 555
Q ss_pred HHH-hcCCcEEEEEecchhHH-hhhccccceeeeEEEEe
Q 003747 517 AFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 517 ~L~-~~g~t~VIitTHd~el~-~~a~~~~~l~ng~v~fd 553 (798)
.+. +.|.| +|++|||.+.+ .+|+++..+.+|++...
T Consensus 172 ~l~~~~g~t-ii~vTHd~~~~~~~adri~vl~~G~i~~~ 209 (348)
T 3d31_A 172 VLHKKNKLT-VLHITHDQTEARIMADRIAVVMDGKLIQV 209 (348)
T ss_dssp HHHHHTTCE-EEEEESCHHHHHHHCSEEEEESSSCEEEE
T ss_pred HHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 565 45887 99999998765 69999999999998754
No 33
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.82 E-value=1.2e-20 Score=195.33 Aligned_cols=156 Identities=17% Similarity=0.098 Sum_probs=105.0
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc--------ccccccccc-ccchhhHH---------
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYA-KVPWFDSV--------- 456 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G--------~~vpa~~~~-~i~~~~~i--------- 456 (798)
+..++++++|+ +.|++++|+||||||||||||+|+++..... | .++|..... ...+.+.+
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~ 98 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE-GKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEY 98 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSE-EEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHH
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCc-cEEEECCEEEEEecCCcccCCCHHHHhhccCCcChH
Confidence 35789999999 8899999999999999999999976543211 1 123321100 00111211
Q ss_pred -----hhhcCchhhHhh-----------hhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHH
Q 003747 457 -----FADIGDEQSLSQ-----------SLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 519 (798)
Q Consensus 457 -----~~~ig~~~si~~-----------~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~ 519 (798)
....+..+.+.. ...++|+++ +++..+.+++.+|++|||||||+|||+.....+...++..+.
T Consensus 99 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~ 178 (229)
T 2pze_A 99 RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 178 (229)
T ss_dssp HHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh
Confidence 112222222211 125677665 456666678999999999999999999766666543333333
Q ss_pred hcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 520 ESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 520 ~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
.|.| ||++||+.+....|+++..+.+|++..++
T Consensus 179 -~~~t-vi~vtH~~~~~~~~d~v~~l~~G~i~~~g 211 (229)
T 2pze_A 179 -ANKT-RILVTSKMEHLKKADKILILHEGSSYFYG 211 (229)
T ss_dssp -TTSE-EEEECCCHHHHHHCSEEEEEETTEEEEEE
T ss_pred -CCCE-EEEEcCChHHHHhCCEEEEEECCEEEEEC
Confidence 3777 99999999888789999999999987653
No 34
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.81 E-value=3.1e-20 Score=196.68 Aligned_cols=157 Identities=16% Similarity=0.134 Sum_probs=107.0
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhh-hhccccc----------------------cccccccc--c
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-MMAKSGL----------------------HILSSEYA--K 449 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~-~~aq~G~----------------------~vpa~~~~--~ 449 (798)
+..++++++|+ ..|++++|+||||||||||||+|+++. +.+..|. ++|..... .
T Consensus 32 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~ 111 (267)
T 2zu0_C 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG 111 (267)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTT
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccc
Confidence 45789999999 899999999999999999999998762 1111111 22221000 0
Q ss_pred cch----------------------------hhHHhhhcCch-hhHhhhhh-hhhHHHH-HHHHHHHhCCCCeEEEEecC
Q 003747 450 VPW----------------------------FDSVFADIGDE-QSLSQSLS-TFSGHLK-QIGNIISQSTSQSLVLLDEI 498 (798)
Q Consensus 450 i~~----------------------------~~~i~~~ig~~-~si~~~ls-tfs~~~~-ri~~il~~a~~psLLLLDEP 498 (798)
+.. ...++..+|.. +....... ++|++++ ++..+.+++.+|++||||||
T Consensus 112 ~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEP 191 (267)
T 2zu0_C 112 VSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 191 (267)
T ss_dssp CBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred ccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 000 01122233442 22233344 4887664 56666677899999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh-h-hccccceeeeEEEEec
Q 003747 499 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-L-KYSNDFFENACMEFDE 554 (798)
Q Consensus 499 ~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~-~-a~~~~~l~ng~v~fd~ 554 (798)
|+|||+.....+. .++..+.+.|.| ||++|||.++.. + |+++..+.+|.+..+.
T Consensus 192 ts~LD~~~~~~l~-~~l~~l~~~g~t-viivtHd~~~~~~~~~d~v~~l~~G~i~~~g 247 (267)
T 2zu0_C 192 DSGLDIDALKVVA-DGVNSLRDGKRS-FIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247 (267)
T ss_dssp TTTCCHHHHHHHH-HHHHTTCCSSCE-EEEECSSGGGGGTSCCSEEEEEETTEEEEEE
T ss_pred CCCCCHHHHHHHH-HHHHHHHhcCCE-EEEEeeCHHHHHhhcCCEEEEEECCEEEEEc
Confidence 9999997766665 466666656887 999999988875 4 7999999999987653
No 35
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.80 E-value=1.7e-20 Score=195.69 Aligned_cols=153 Identities=13% Similarity=0.138 Sum_probs=103.9
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------cccccccc-ccch
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYA-KVPW 452 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~-~i~~ 452 (798)
+..++++++|+ +.|++++|+||||||||||||+|+++.... .|. ++|..... ...+
T Consensus 14 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv 92 (243)
T 1mv5_A 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT-AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTI 92 (243)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS-BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEH
T ss_pred CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccH
Confidence 35689999999 899999999999999999999997653221 111 22221000 0011
Q ss_pred hhHH----------------hhhcCchhhHh-----------hhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 453 FDSV----------------FADIGDEQSLS-----------QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 453 ~~~i----------------~~~ig~~~si~-----------~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
.+++ +..++..+.+. ...+++|+++ +++..+.+++.+|++|||||||+|||+
T Consensus 93 ~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~ 172 (243)
T 1mv5_A 93 RENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDS 172 (243)
T ss_dssp HHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCS
T ss_pred HHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 1111 11112211111 1224677655 566666677999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEE
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 552 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~f 552 (798)
.....+.. ++..+. .|.| ||++||+.+....|+++..+.+|.+..
T Consensus 173 ~~~~~i~~-~l~~~~-~~~t-vi~vtH~~~~~~~~d~v~~l~~G~i~~ 217 (243)
T 1mv5_A 173 ESESMVQK-ALDSLM-KGRT-TLVIAHRLSTIVDADKIYFIEKGQITG 217 (243)
T ss_dssp SSCCHHHH-HHHHHH-TTSE-EEEECCSHHHHHHCSEEEEEETTEECC
T ss_pred HHHHHHHH-HHHHhc-CCCE-EEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 77777755 555666 5887 999999998887899999998888754
No 36
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.80 E-value=4.8e-20 Score=189.28 Aligned_cols=143 Identities=15% Similarity=0.136 Sum_probs=98.1
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-----cc----------ccccccccc--ccchh------
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG----------LHILSSEYA--KVPWF------ 453 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-----~G----------~~vpa~~~~--~i~~~------ 453 (798)
.++.+++|+ ..|++++|+||||||||||||+|+++..... .| .++|..... .+.+.
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~ 102 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAV 102 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHH
Confidence 789999999 8899999999999999999999976532110 00 123321100 01111
Q ss_pred -------------hHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHH
Q 003747 454 -------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 519 (798)
Q Consensus 454 -------------~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~ 519 (798)
..++..++..+. ....+++|+++ +++..+.+++.+|++|||||||+||||.....+.. ++..+.
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~~~ 180 (214)
T 1sgw_A 103 ASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK-SILEIL 180 (214)
T ss_dssp HHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHH-HHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHH-HHHHHH
Confidence 122333444444 55566788665 45666667899999999999999999977777755 566666
Q ss_pred hcCCcEEEEEecchhHHh-hhcccc
Q 003747 520 ESGSLLTIATTHHGELKT-LKYSND 543 (798)
Q Consensus 520 ~~g~t~VIitTHd~el~~-~a~~~~ 543 (798)
+.|.| ||++||+.+... +|++++
T Consensus 181 ~~g~t-iiivtHd~~~~~~~~d~v~ 204 (214)
T 1sgw_A 181 KEKGI-VIISSREELSYCDVNENLH 204 (214)
T ss_dssp HHHSE-EEEEESSCCTTSSEEEEGG
T ss_pred hCCCE-EEEEeCCHHHHHHhCCEEE
Confidence 66787 999999987765 555554
No 37
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.80 E-value=8.6e-20 Score=192.98 Aligned_cols=150 Identities=16% Similarity=0.145 Sum_probs=107.8
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc-------------------ccccccccccchh---
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------HILSSEYAKVPWF--- 453 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~-------------------~vpa~~~~~i~~~--- 453 (798)
+.++.+++|+ . |++++|+||||||||||||+|+++. +. .|. ++|........+.
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~-~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl 94 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY-SGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIV 94 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC-EEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC-CcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHH
Confidence 4689999999 8 9999999999999999999998765 32 221 3332111011111
Q ss_pred --------------hHHhhhcCch-hhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHH
Q 003747 454 --------------DSVFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 517 (798)
Q Consensus 454 --------------~~i~~~ig~~-~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~ 517 (798)
..++..++.. +......+++|++++ ++..+.+++.+|++|||||||+|||+.....+.. ++..
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~-~L~~ 173 (263)
T 2pjz_A 95 YLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISR-YIKE 173 (263)
T ss_dssp HHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHH-HHHH
T ss_pred HHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHH-HHHH
Confidence 1233445665 556666778887664 5666667899999999999999999966666544 4444
Q ss_pred HHhcCCcEEEEEecchhHH-hhhc-cccceeeeEEEEec
Q 003747 518 FAESGSLLTIATTHHGELK-TLKY-SNDFFENACMEFDE 554 (798)
Q Consensus 518 L~~~g~t~VIitTHd~el~-~~a~-~~~~l~ng~v~fd~ 554 (798)
+.+ | ||++|||.+.. .+|+ ++..+.+|++..+.
T Consensus 174 ~~~---t-viivtHd~~~~~~~~d~~i~~l~~G~i~~~g 208 (263)
T 2pjz_A 174 YGK---E-GILVTHELDMLNLYKEYKAYFLVGNRLQGPI 208 (263)
T ss_dssp SCS---E-EEEEESCGGGGGGCTTSEEEEEETTEEEEEE
T ss_pred hcC---c-EEEEEcCHHHHHHhcCceEEEEECCEEEEec
Confidence 432 6 99999998775 6899 99999999987643
No 38
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.79 E-value=8e-20 Score=190.17 Aligned_cols=154 Identities=10% Similarity=0.078 Sum_probs=103.7
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc--------cccccccc-cccchhhHHh---------
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEY-AKVPWFDSVF--------- 457 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G--------~~vpa~~~-~~i~~~~~i~--------- 457 (798)
..++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ....+.+.+.
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~ 96 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV-EGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPY 96 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE-EEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHH
Confidence 5689999999 899999999999999999999997654321 11 12332110 0111222221
Q ss_pred -----hhcCchhh-----------HhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHH--HHH
Q 003747 458 -----ADIGDEQS-----------LSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL--EAF 518 (798)
Q Consensus 458 -----~~ig~~~s-----------i~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all--~~L 518 (798)
..++..+. +....+.+|+++ +++..+.+++.+|++|||||||+|||+.....+...+. ..+
T Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~ 176 (237)
T 2cbz_A 97 YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM 176 (237)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTST
T ss_pred HHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhh
Confidence 11111111 122335677665 55666667899999999999999999976666654332 222
Q ss_pred HhcCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 519 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 519 ~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
. .|.| ||++||+.+...+|+++..+.+|.+..+
T Consensus 177 ~-~~~t-viivtH~~~~~~~~d~v~~l~~G~i~~~ 209 (237)
T 2cbz_A 177 L-KNKT-RILVTHSMSYLPQVDVIIVMSGGKISEM 209 (237)
T ss_dssp T-TTSE-EEEECSCSTTGGGSSEEEEEETTEEEEE
T ss_pred c-CCCE-EEEEecChHHHHhCCEEEEEeCCEEEEe
Confidence 2 4777 9999999888778999999999988754
No 39
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.79 E-value=1.3e-19 Score=191.18 Aligned_cols=152 Identities=12% Similarity=0.025 Sum_probs=103.5
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------ccccccc-cccchh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEY-AKVPWF 453 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~-~~i~~~ 453 (798)
..++.+++|+ +.|++++|+||||||||||||+|+++.. + .|. ++|.... ....+.
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~ 110 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-A-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIK 110 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-C-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHH
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-C-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHH
Confidence 4689999999 8899999999999999999999976542 1 121 1221000 000111
Q ss_pred hHHh---------------hhcCchhhHh-----------hhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 454 DSVF---------------ADIGDEQSLS-----------QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 454 ~~i~---------------~~ig~~~si~-----------~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
+++. ..++..+.+. ....++|+++ +++..+.+++.+|++|||||||+|||+..
T Consensus 111 enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~ 190 (260)
T 2ghi_A 111 YNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT 190 (260)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHH
T ss_pred HHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 2221 1112222111 1124677655 56666667899999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 507 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 507 g~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
...+. .++..+.+ |.| ||++||+.+....|+++..+.+|.+..+
T Consensus 191 ~~~i~-~~l~~l~~-~~t-viivtH~~~~~~~~d~i~~l~~G~i~~~ 234 (260)
T 2ghi_A 191 EYLFQ-KAVEDLRK-NRT-LIIIAHRLSTISSAESIILLNKGKIVEK 234 (260)
T ss_dssp HHHHH-HHHHHHTT-TSE-EEEECSSGGGSTTCSEEEEEETTEEEEE
T ss_pred HHHHH-HHHHHhcC-CCE-EEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence 66664 46666654 777 9999999988778999999999988754
No 40
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.78 E-value=8e-20 Score=195.86 Aligned_cols=154 Identities=18% Similarity=0.112 Sum_probs=104.1
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc--------ccccccccc-ccchhhHHh---------
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYA-KVPWFDSVF--------- 457 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G--------~~vpa~~~~-~i~~~~~i~--------- 457 (798)
..++++++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... ...+.+.+.
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~-~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~ 129 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS-EGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRY 129 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE-EEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHH
Confidence 5689999999 899999999999999999999997654321 12 123321100 012222222
Q ss_pred ----hhcCchhhHhh-----------hhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc
Q 003747 458 ----ADIGDEQSLSQ-----------SLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 521 (798)
Q Consensus 458 ----~~ig~~~si~~-----------~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~ 521 (798)
...+..+.+.. ....+|++++ ++..+.+++.+|++|||||||+|||+.....+...++..+. .
T Consensus 130 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~ 208 (290)
T 2bbs_A 130 RSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-A 208 (290)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-T
T ss_pred HHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-C
Confidence 11222222211 1246776654 56666677999999999999999999776666543333333 4
Q ss_pred CCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 522 GSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 522 g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
|.| ||++||+.+...+|+++..+.+|.+..+
T Consensus 209 ~~t-viivtHd~~~~~~~d~i~~l~~G~i~~~ 239 (290)
T 2bbs_A 209 NKT-RILVTSKMEHLKKADKILILHEGSSYFY 239 (290)
T ss_dssp TSE-EEEECCCHHHHHHSSEEEEEETTEEEEE
T ss_pred CCE-EEEEecCHHHHHcCCEEEEEECCeEEEe
Confidence 777 9999999988888999999999998754
No 41
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.78 E-value=4.6e-19 Score=191.28 Aligned_cols=156 Identities=13% Similarity=0.105 Sum_probs=106.3
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc--------------------cccccccccccc--cc
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEYAK--VP 451 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq--------------------~G~~vpa~~~~~--i~ 451 (798)
++..++.+++|+ +.|++++|+||||||||||+|+|+++..... .-.++|. .... ..
T Consensus 65 ~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q-~~~lf~~T 143 (306)
T 3nh6_A 65 DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQ-DTVLFNDT 143 (306)
T ss_dssp TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECS-SCCCCSEE
T ss_pred CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEec-CCccCccc
Confidence 346799999999 8999999999999999999999976532211 0012232 1110 11
Q ss_pred hhhHHh---------------hhcCchhhHhh-----------hhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 452 WFDSVF---------------ADIGDEQSLSQ-----------SLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 452 ~~~~i~---------------~~ig~~~si~~-----------~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
+.+++. ...+..+.+.. ....+|+++ +++..+.+++.+|++|||||||+|||+
T Consensus 144 v~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~ 223 (306)
T 3nh6_A 144 IADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDT 223 (306)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCH
T ss_pred HHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 222221 11122222211 113567655 566677778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
.....+.. ++..+.. +.| +|++||++.....|+++..+.+|.+..++
T Consensus 224 ~~~~~i~~-~l~~l~~-~~T-vi~itH~l~~~~~aD~i~vl~~G~iv~~G 270 (306)
T 3nh6_A 224 SNERAIQA-SLAKVCA-NRT-TIVVAHRLSTVVNADQILVIKDGCIVERG 270 (306)
T ss_dssp HHHHHHHH-HHHHHHT-TSE-EEEECCSHHHHHTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHH-HHHHHcC-CCE-EEEEEcChHHHHcCCEEEEEECCEEEEEC
Confidence 77777654 5555543 677 89999999988889999999999998654
No 42
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.76 E-value=6.8e-19 Score=195.78 Aligned_cols=153 Identities=14% Similarity=0.059 Sum_probs=108.5
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------cccccccccc--c
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV--P 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~i--~ 451 (798)
+..++++++|+ ..|++++|+||||||||||||+|+++.. . .|. ++|. ....+ .
T Consensus 33 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~-~G~I~i~G~~i~~~~~~~~rr~ig~v~Q-~~~lf~~t 109 (390)
T 3gd7_A 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T-EGEIQIDGVSWDSITLEQWRKAFGVIPQ-KVFIFSGT 109 (390)
T ss_dssp SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E-EEEEEESSCBTTSSCHHHHHHTEEEESC-CCCCCSEE
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C-CeEEEECCEECCcCChHHHhCCEEEEcC-CcccCccC
Confidence 45789999999 8999999999999999999999977542 1 121 1221 00000 1
Q ss_pred hhh--------------HHhhhcCchhhHhhhhhh-----------hhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 452 WFD--------------SVFADIGDEQSLSQSLST-----------FSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 452 ~~~--------------~i~~~ig~~~si~~~lst-----------fs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
+.+ .++..++..+.+...... +|+++ +|+..+.+++.+|++|||||||+|||+.
T Consensus 110 v~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~ 189 (390)
T 3gd7_A 110 FRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189 (390)
T ss_dssp HHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHH
T ss_pred HHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 111 223344555444444444 78665 5666677789999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
....+.. ++..+ ..++| +|++|||.+...+|+++..+.+|++...+
T Consensus 190 ~~~~l~~-~l~~~-~~~~t-vi~vtHd~e~~~~aDri~vl~~G~i~~~g 235 (390)
T 3gd7_A 190 TYQIIRR-TLKQA-FADCT-VILCEARIEAMLECDQFLVIEENKVRQYD 235 (390)
T ss_dssp HHHHHHH-HHHTT-TTTSC-EEEECSSSGGGTTCSEEEEEETTEEEEES
T ss_pred HHHHHHH-HHHHH-hCCCE-EEEEEcCHHHHHhCCEEEEEECCEEEEEC
Confidence 6666654 44443 24677 99999999888889999999999997654
No 43
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.72 E-value=9.8e-18 Score=193.88 Aligned_cols=146 Identities=15% Similarity=0.115 Sum_probs=102.7
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccc--------------------------------ccc
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH--------------------------------ILS 444 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~--------------------------------vpa 444 (798)
.++.+++ . ..|++++|+||||||||||||+|+++.... .|.. ++.
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~-~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q 113 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN-LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ 113 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC-TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECS
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhh
Confidence 4788887 7 788999999999999999999997653221 1210 000
Q ss_pred ccc--c-----cc----------chhhHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 445 SEY--A-----KV----------PWFDSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 445 ~~~--~-----~i----------~~~~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
... . .+ .....++..+|.........+++|++++ ++..+.+++.+|++|||||||+|||+..
T Consensus 114 ~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~ 193 (538)
T 1yqt_A 114 YVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ 193 (538)
T ss_dssp CGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred hhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 000 0 00 0112344556666666667788887665 5555667789999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceee
Q 003747 507 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFEN 547 (798)
Q Consensus 507 g~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~n 547 (798)
...+.. +++.+.+.|.| ||++|||.++. .+|+++..+.+
T Consensus 194 ~~~l~~-~L~~l~~~g~t-vi~vsHd~~~~~~~~dri~vl~~ 233 (538)
T 1yqt_A 194 RLNAAR-AIRRLSEEGKS-VLVVEHDLAVLDYLSDIIHVVYG 233 (538)
T ss_dssp HHHHHH-HHHHHHHTTCE-EEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHH-HHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEcC
Confidence 777654 66677777888 99999998877 47888776654
No 44
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.72 E-value=1.3e-17 Score=192.87 Aligned_cols=146 Identities=14% Similarity=0.072 Sum_probs=99.3
Q ss_pred ceeeeEEECCCCeEEEEEecCCCCchhhhhhcchhhhhcccccc------------ccc------------cc------c
Q 003747 398 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH------------ILS------------SE------Y 447 (798)
Q Consensus 398 ~V~~disL~~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~------------vpa------------~~------~ 447 (798)
+.+..+..-..|++++|+||||||||||||+|+++..+. .|.. +.. .. .
T Consensus 14 f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~-~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~ 92 (538)
T 3ozx_A 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPN-FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKI 92 (538)
T ss_dssp CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCC-TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEEC
T ss_pred eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhcc
Confidence 444455545789999999999999999999997653221 1211 000 00 0
Q ss_pred ccc---------------------chhhHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 448 AKV---------------------PWFDSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 448 ~~i---------------------~~~~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
..+ .....++..++.........+++|++++ ++..+.+++.+|++|||||||+|||+.
T Consensus 93 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~ 172 (538)
T 3ozx_A 93 QYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVR 172 (538)
T ss_dssp SCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred chhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 000 0112345556666666777788897665 555556778999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhccccceee
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFEN 547 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~-~a~~~~~l~n 547 (798)
....+.. +++.+.+ |.| ||++|||+++.. +|+++..+.+
T Consensus 173 ~~~~l~~-~l~~l~~-g~t-ii~vsHdl~~~~~~~d~i~vl~~ 212 (538)
T 3ozx_A 173 ERMNMAK-AIRELLK-NKY-VIVVDHDLIVLDYLTDLIHIIYG 212 (538)
T ss_dssp HHHHHHH-HHHHHCT-TSE-EEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHH-HHHHHhC-CCE-EEEEEeChHHHHhhCCEEEEecC
Confidence 7777754 6666765 887 999999988775 6776655543
No 45
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.72 E-value=1.3e-17 Score=192.86 Aligned_cols=141 Identities=15% Similarity=0.146 Sum_probs=98.8
Q ss_pred EEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------cccccccc--ccch------------------h
Q 003747 404 FIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------HILSSEYA--KVPW------------------F 453 (798)
Q Consensus 404 sL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------~vpa~~~~--~i~~------------------~ 453 (798)
+++ ..|++++|+||||||||||||+|+++..... |. ++|..... ...+ .
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~ 366 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADE-GSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFF 366 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSB-CCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHH
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-cEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHH
Confidence 344 5789999999999999999999976543221 21 22221000 0111 1
Q ss_pred hHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHH-hcCCcEEEEEec
Q 003747 454 DSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA-ESGSLLTIATTH 531 (798)
Q Consensus 454 ~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~-~~g~t~VIitTH 531 (798)
..++..++..+.......++|++++ ++..+.+++.+|++|||||||+|||+.....+.. ++..+. +.|.| ||++||
T Consensus 367 ~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~-~l~~l~~~~g~t-vi~vsH 444 (538)
T 3ozx_A 367 EEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAK-AIKRVTRERKAV-TFIIDH 444 (538)
T ss_dssp HHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHHTTCE-EEEECS
T ss_pred HHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHhCCCE-EEEEeC
Confidence 2334455666666677788897664 5666667799999999999999999977777765 555565 45887 999999
Q ss_pred chhHHh-hhccccceee
Q 003747 532 HGELKT-LKYSNDFFEN 547 (798)
Q Consensus 532 d~el~~-~a~~~~~l~n 547 (798)
|.+++. +|+++..+.+
T Consensus 445 dl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 445 DLSIHDYIADRIIVFKG 461 (538)
T ss_dssp CHHHHHHHCSEEEEEEE
T ss_pred CHHHHHHhCCEEEEEeC
Confidence 998875 7888877764
No 46
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.71 E-value=1.2e-17 Score=197.67 Aligned_cols=85 Identities=19% Similarity=0.127 Sum_probs=68.2
Q ss_pred hhhhhhhhHHHH-HHHHHHHhCCCCe--EEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccc
Q 003747 467 SQSLSTFSGHLK-QIGNIISQSTSQS--LVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 543 (798)
Q Consensus 467 ~~~lstfs~~~~-ri~~il~~a~~ps--LLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~ 543 (798)
....+++|++++ ++..+.+++.+|+ ||||||||+||||.....+.. ++..+.+.|.| ||+||||+++..+|+++.
T Consensus 197 ~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~-~l~~l~~~g~t-vi~vtHd~~~~~~~d~ii 274 (670)
T 3ux8_A 197 SRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIA-TLKSMRDLGNT-LIVVEHDEDTMLAADYLI 274 (670)
T ss_dssp TCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHHHHTTCE-EEEECCCHHHHHHCSEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHcCCE-EEEEeCCHHHHhhCCEEE
Confidence 345667887665 4555556678887 999999999999988887754 77778878888 999999999888899988
Q ss_pred ce------eeeEEEEe
Q 003747 544 FF------ENACMEFD 553 (798)
Q Consensus 544 ~l------~ng~v~fd 553 (798)
.+ .+|.+.++
T Consensus 275 ~l~~g~~~~~G~i~~~ 290 (670)
T 3ux8_A 275 DIGPGAGIHGGEVVAA 290 (670)
T ss_dssp EECSSSGGGCCSEEEE
T ss_pred EecccccccCCEEEEe
Confidence 88 78888764
No 47
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1e-17 Score=196.04 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=101.7
Q ss_pred eeeeEEEC-CCC-----eEEEEEecCCCCchhhhhhcchhhhhccccc--------ccccccccc--cchh---------
Q 003747 399 VPIDIFIA-RKT-----RVLVITGPNTGGKTICLKTVGLAVMMAKSGL--------HILSSEYAK--VPWF--------- 453 (798)
Q Consensus 399 V~~disL~-~~g-----~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~--------~vpa~~~~~--i~~~--------- 453 (798)
+..+++|+ ..| ++++|+||||||||||||+|+++..... |. ++|...... ..+.
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~-G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~ 440 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDE-GQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRG 440 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSB-CCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSS
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCC-CcCccCCcEEEecccccccCCccHHHHHHHHhhc
Confidence 45566665 444 7899999999999999999977643322 21 222210000 0111
Q ss_pred --------hHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHH-HhcCC
Q 003747 454 --------DSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF-AESGS 523 (798)
Q Consensus 454 --------~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L-~~~g~ 523 (798)
..++..+++.+......+++|++++ ++..+.+++.+|++|||||||+|||+.....+.. ++..+ .+.|.
T Consensus 441 ~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~-ll~~l~~~~g~ 519 (608)
T 3j16_B 441 QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSK-VIRRFILHNKK 519 (608)
T ss_dssp TTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHH-HHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHhCCC
Confidence 1223334444444556677887665 5666667899999999999999999977777765 55555 45688
Q ss_pred cEEEEEecchhHHh-hhccccceee--eEEEE
Q 003747 524 LLTIATTHHGELKT-LKYSNDFFEN--ACMEF 552 (798)
Q Consensus 524 t~VIitTHd~el~~-~a~~~~~l~n--g~v~f 552 (798)
| ||++|||.++.. +|+++..+.+ |.+..
T Consensus 520 t-viivtHdl~~~~~~aDrvivl~~~~g~~~~ 550 (608)
T 3j16_B 520 T-AFIVEHDFIMATYLADKVIVFEGIPSKNAH 550 (608)
T ss_dssp E-EEEECSCHHHHHHHCSEEEECEEETTTEEE
T ss_pred E-EEEEeCCHHHHHHhCCEEEEEeCCCCeEEe
Confidence 8 999999988874 7888887765 45544
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.71 E-value=2.6e-17 Score=192.71 Aligned_cols=146 Identities=17% Similarity=0.147 Sum_probs=102.8
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccc--------------------------------ccc
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH--------------------------------ILS 444 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~--------------------------------vpa 444 (798)
.++.+++ . ..|++++|+||||||||||||+|+++.... .|.. ++.
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~-~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q 183 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN-LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ 183 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC-TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECS
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC-CCccccccchhhheeCCEehhhhhhhhhhhhcceEEeec
Confidence 4788887 6 788999999999999999999997654221 1110 000
Q ss_pred ccc--c-----c----------cchhhHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 445 SEY--A-----K----------VPWFDSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 445 ~~~--~-----~----------i~~~~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
... . . ......++..+|..+......+++|++++ ++..+.+++.+|++|||||||+|||+..
T Consensus 184 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~ 263 (607)
T 3bk7_A 184 YVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263 (607)
T ss_dssp CGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHH
T ss_pred hhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 000 0 0 00112345556666666777788887665 5566667799999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccceee
Q 003747 507 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFEN 547 (798)
Q Consensus 507 g~al~~all~~L~~~g~t~VIitTHd~el~-~~a~~~~~l~n 547 (798)
...+.. +++.+.+.|.| ||++|||.++. .+|+++..+.+
T Consensus 264 ~~~l~~-~L~~l~~~g~t-vIivsHdl~~~~~~adri~vl~~ 303 (607)
T 3bk7_A 264 RLKVAR-VIRRLANEGKA-VLVVEHDLAVLDYLSDVIHVVYG 303 (607)
T ss_dssp HHHHHH-HHHHHHHTTCE-EEEECSCHHHHHHHCSEEEEEES
T ss_pred HHHHHH-HHHHHHhcCCE-EEEEecChHHHHhhCCEEEEECC
Confidence 777654 66677767888 99999998876 47787766643
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.70 E-value=3.5e-17 Score=189.30 Aligned_cols=145 Identities=17% Similarity=0.090 Sum_probs=100.3
Q ss_pred eeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc--------ccccccccc--ccch----------------
Q 003747 400 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYA--KVPW---------------- 452 (798)
Q Consensus 400 ~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G--------~~vpa~~~~--~i~~---------------- 452 (798)
+..++++ ..|++++|+||||||||||||+|+++..... | .++|..... ...+
T Consensus 302 l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~-G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~ 380 (538)
T 1yqt_A 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE-GKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNF 380 (538)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB-CCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHH
T ss_pred EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-eEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHH
Confidence 3444444 5789999999999999999999976543211 1 123321110 1111
Q ss_pred -hhHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHH-hcCCcEEEEE
Q 003747 453 -FDSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA-ESGSLLTIAT 529 (798)
Q Consensus 453 -~~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~-~~g~t~VIit 529 (798)
...++..++..+.......++|++++ ++..+.+++.+|+||||||||+|||+.....+.. ++..+. +.|.| ||++
T Consensus 381 ~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~-~l~~l~~~~g~t-vi~v 458 (538)
T 1yqt_A 381 YKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR-AIRHLMEKNEKT-ALVV 458 (538)
T ss_dssp HHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH-HHHHHHHHHTCE-EEEE
T ss_pred HHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhCCCE-EEEE
Confidence 11234445666566667778887655 5666667899999999999999999977777765 555555 56888 9999
Q ss_pred ecchhHHh-hhccccceee
Q 003747 530 THHGELKT-LKYSNDFFEN 547 (798)
Q Consensus 530 THd~el~~-~a~~~~~l~n 547 (798)
|||.++.. +|+++..+.+
T Consensus 459 sHd~~~~~~~~drv~vl~~ 477 (538)
T 1yqt_A 459 EHDVLMIDYVSDRLMVFEG 477 (538)
T ss_dssp CSCHHHHHHHCSEEEEEEE
T ss_pred eCCHHHHHHhCCEEEEEeC
Confidence 99988874 8888887765
No 50
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.70 E-value=4.3e-17 Score=190.55 Aligned_cols=155 Identities=13% Similarity=0.110 Sum_probs=105.0
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-----cc---------------cccccccc-cccchhh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG---------------LHILSSEY-AKVPWFD 454 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-----~G---------------~~vpa~~~-~~i~~~~ 454 (798)
..+++|++++ +.|++++|+||||||||||+|+|+++..+.. .| .++|.... ....+.+
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 436 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAE 436 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHH
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHH
Confidence 4689999999 8999999999999999999999976532211 00 12222100 0001122
Q ss_pred HH------------------hhhcCchhhHhh---h--------hhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 455 SV------------------FADIGDEQSLSQ---S--------LSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 455 ~i------------------~~~ig~~~si~~---~--------lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
++ +...+..+.+.. + -..+|+++ +|+..+.+++.+|++|||||||+|||+
T Consensus 437 ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~ 516 (595)
T 2yl4_A 437 NIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDA 516 (595)
T ss_dssp HHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCH
T ss_pred HHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCH
Confidence 22 111222222211 0 14567655 566666777899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
.....+. ..+..+.+ |.| +|++||+.+....||++..+.+|++..++
T Consensus 517 ~~~~~i~-~~l~~~~~-~~t-vi~itH~~~~~~~~d~i~~l~~G~i~~~g 563 (595)
T 2yl4_A 517 ENEYLVQ-EALDRLMD-GRT-VLVIAHRLSTIKNANMVAVLDQGKITEYG 563 (595)
T ss_dssp HHHHHHH-HHHHHHHT-TSE-EEEECCCHHHHHHSSEEEEEETTEEEEEE
T ss_pred HHHHHHH-HHHHHHhc-CCE-EEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 7666654 45556655 777 99999999888889999999999997654
No 51
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.70 E-value=4.1e-17 Score=190.32 Aligned_cols=153 Identities=9% Similarity=0.083 Sum_probs=105.3
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------ccccccccc--cch
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAK--VPW 452 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------~vpa~~~~~--i~~ 452 (798)
+.++++++++ +.|++++|+||||||||||+|+|+++..+. .|. ++|. +..- ..+
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~Q-~~~l~~~tv 433 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD-SGSICLDGHDVRDYKLTNLRRHFALVSQ-NVHLFNDTI 433 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CCEEEECCEEhhhCCHHHHhcCeEEEcC-CCccccccH
Confidence 5789999999 899999999999999999999997653221 111 2222 1000 011
Q ss_pred hhHH----------------hhhcCchhhHhh-----------hhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 453 FDSV----------------FADIGDEQSLSQ-----------SLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 453 ~~~i----------------~~~ig~~~si~~-----------~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
.+++ +...+..+.+.. ...++|+++ +|+..+.+++.+|++|||||||+|+|+
T Consensus 434 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~ 513 (582)
T 3b5x_A 434 ANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDT 513 (582)
T ss_pred HHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence 1111 112222222221 124577655 566667778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
.....+.. .+..+.+ |.| +|++||+.+....||++..+.+|++..++
T Consensus 514 ~~~~~i~~-~l~~~~~-~~t-vi~itH~~~~~~~~d~i~~l~~G~i~~~g 560 (582)
T 3b5x_A 514 ESERAIQA-ALDELQK-NKT-VLVIAHRLSTIEQADEILVVDEGEIIERG 560 (582)
T ss_pred HHHHHHHH-HHHHHcC-CCE-EEEEecCHHHHHhCCEEEEEECCEEEEEC
Confidence 77766654 5555554 787 99999999888889999999999987643
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.70 E-value=4e-17 Score=191.19 Aligned_cols=146 Identities=17% Similarity=0.115 Sum_probs=100.0
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc--------ccccccccc--ccchh--------------
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYA--KVPWF-------------- 453 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G--------~~vpa~~~~--~i~~~-------------- 453 (798)
.+..++++ ..|++++|+||||||||||||+|+++..... | .++|..... ...+.
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~-G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~ 449 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE-GKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSN 449 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB-SCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCc-eEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHH
Confidence 34444444 6789999999999999999999976543211 2 123321110 11111
Q ss_pred ---hHHhhhcCchhhHhhhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHH-hcCCcEEEE
Q 003747 454 ---DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA-ESGSLLTIA 528 (798)
Q Consensus 454 ---~~i~~~ig~~~si~~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~-~~g~t~VIi 528 (798)
..++..++..+......+++|+++ +++..+.+++.+|+||||||||+|||+.....+.. +++.+. +.|.| ||+
T Consensus 450 ~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~t-vi~ 527 (607)
T 3bk7_A 450 FYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR-AIRHLMEKNEKT-ALV 527 (607)
T ss_dssp HHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH-HHHHHHHHTTCE-EEE
T ss_pred HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHhCCCE-EEE
Confidence 122344555555566677888765 45666667899999999999999999977777755 555665 56887 999
Q ss_pred EecchhHHh-hhccccceee
Q 003747 529 TTHHGELKT-LKYSNDFFEN 547 (798)
Q Consensus 529 tTHd~el~~-~a~~~~~l~n 547 (798)
+|||.++.. +|+++..+.+
T Consensus 528 vsHd~~~~~~~adrv~vl~~ 547 (607)
T 3bk7_A 528 VEHDVLMIDYVSDRLIVFEG 547 (607)
T ss_dssp ECSCHHHHHHHCSEEEEEEE
T ss_pred EeCCHHHHHHhCCEEEEEcC
Confidence 999988875 8888877764
No 53
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.70 E-value=4.2e-17 Score=190.16 Aligned_cols=154 Identities=10% Similarity=0.078 Sum_probs=106.0
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------ccccccccc-ccchh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA-KVPWF 453 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~~-~i~~~ 453 (798)
+.++++++++ +.|++++|+||||||||||+|+|+++..+.. | .++|..... ...+.
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~-G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~ 434 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE-GHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVA 434 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSE-EEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHH
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCC-CeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHH
Confidence 5799999999 8999999999999999999999976532211 1 122321000 00112
Q ss_pred hHH----------------hhhcCchhhHhh-----------hhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 454 DSV----------------FADIGDEQSLSQ-----------SLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 454 ~~i----------------~~~ig~~~si~~-----------~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
+++ +...+..+.+.. ....+|+++ +|+..+.+++.+|++|||||||+|+|+.
T Consensus 435 eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~ 514 (582)
T 3b60_A 435 NNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514 (582)
T ss_dssp HHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHH
T ss_pred HHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHH
Confidence 222 122233222222 113567655 5666667778999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
....+.. .+..+.+ |.| +|++||+.+....||++..+.+|++..++
T Consensus 515 ~~~~i~~-~l~~~~~-~~t-vi~itH~~~~~~~~d~i~~l~~G~i~~~g 560 (582)
T 3b60_A 515 SERAIQA-ALDELQK-NRT-SLVIAHRLSTIEQADEIVVVEDGIIVERG 560 (582)
T ss_dssp HHHHHHH-HHHHHHT-TSE-EEEECSCGGGTTTCSEEEEEETTEEEEEE
T ss_pred HHHHHHH-HHHHHhC-CCE-EEEEeccHHHHHhCCEEEEEECCEEEEec
Confidence 7776654 5555654 787 99999999888889999999999987643
No 54
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.70 E-value=4.6e-17 Score=189.73 Aligned_cols=155 Identities=13% Similarity=0.127 Sum_probs=105.0
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-----cc---------------cccccccccc--cch
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG---------------LHILSSEYAK--VPW 452 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-----~G---------------~~vpa~~~~~--i~~ 452 (798)
+.++++|++++ +.|++++|+||||||||||+|+|.++..+.. .| .++|. +..- -.+
T Consensus 353 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q-~~~l~~~tv 431 (578)
T 4a82_A 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQ-DNILFSDTV 431 (578)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECS-SCCCCSSBH
T ss_pred CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeC-CCccCcccH
Confidence 45789999999 8999999999999999999999976432211 00 12232 1100 012
Q ss_pred hhHHh---------------hhcCchhhHh-----------hhhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 453 FDSVF---------------ADIGDEQSLS-----------QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 453 ~~~i~---------------~~ig~~~si~-----------~~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
.+++. ...+..+.+. ..-..+|+++ +|+..+.+++.+|+++||||||+|+|+.
T Consensus 432 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~ 511 (578)
T 4a82_A 432 KENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511 (578)
T ss_dssp HHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHH
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence 22221 1112222221 1113567655 5666667778999999999999999996
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
....+ ...++.+. .+.| +|++||+.+....||++..+.+|++..++
T Consensus 512 ~~~~i-~~~l~~~~-~~~t-~i~itH~l~~~~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 512 SESII-QEALDVLS-KDRT-TLIVAHRLSTITHADKIVVIENGHIVETG 557 (578)
T ss_dssp HHHHH-HHHHHHHT-TTSE-EEEECSSGGGTTTCSEEEEEETTEEEEEE
T ss_pred HHHHH-HHHHHHHc-CCCE-EEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 65555 44555553 4677 89999999988889999999999998754
No 55
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.69 E-value=4.6e-17 Score=190.52 Aligned_cols=156 Identities=12% Similarity=0.088 Sum_probs=106.5
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccc-----c---------------cccccccccc--cc
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS-----G---------------LHILSSEYAK--VP 451 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~-----G---------------~~vpa~~~~~--i~ 451 (798)
++..+++|++++ +.|++++|+||||||||||+|+|+++...... | .++|. +..- ..
T Consensus 366 ~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q-~~~lf~~t 444 (598)
T 3qf4_B 366 KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQ-DTILFSTT 444 (598)
T ss_dssp SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECT-TCCCCSSB
T ss_pred CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeC-CCcccccc
Confidence 345789999999 89999999999999999999999764322110 0 12222 1100 01
Q ss_pred hhhHH---------------hhhcCchhhHhh-----------hhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 452 WFDSV---------------FADIGDEQSLSQ-----------SLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 452 ~~~~i---------------~~~ig~~~si~~-----------~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
+.+++ ....+..+.+.. .-..+|+++ +|+..+.+++.+|++|||||||+|+|+
T Consensus 445 v~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~ 524 (598)
T 3qf4_B 445 VKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDT 524 (598)
T ss_dssp HHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCH
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCH
Confidence 12222 111222222221 113567655 566667778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
.....+.. .+..+. .|+| +|++||+.+....||++..+.+|++..++
T Consensus 525 ~~~~~i~~-~l~~~~-~~~t-~i~itH~l~~~~~~d~i~~l~~G~i~~~g 571 (598)
T 3qf4_B 525 KTEKSIQA-AMWKLM-EGKT-SIIIAHRLNTIKNADLIIVLRDGEIVEMG 571 (598)
T ss_dssp HHHHHHHH-HHHHHH-TTSE-EEEESCCTTHHHHCSEEEEECSSSEEECS
T ss_pred HHHHHHHH-HHHHHc-CCCE-EEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 77777755 555554 4787 99999999888889999999999987654
No 56
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.69 E-value=4.8e-17 Score=189.94 Aligned_cols=154 Identities=12% Similarity=0.118 Sum_probs=105.8
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------ccccccccccc--c
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~~~i--~ 451 (798)
+..+++|++++ +.|++++|+||||||||||+|+|+++..... | .++|. +..-+ .
T Consensus 355 ~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~-G~i~i~g~~i~~~~~~~~r~~i~~v~Q-~~~lf~~t 432 (587)
T 3qf4_A 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPER-GRVEVDELDVRTVKLKDLRGHISAVPQ-ETVLFSGT 432 (587)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSE-EEEEESSSBGGGBCHHHHHHHEEEECS-SCCCCSEE
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCC-cEEEECCEEcccCCHHHHHhheEEECC-CCcCcCcc
Confidence 45799999999 8999999999999999999999976432211 1 12232 11000 1
Q ss_pred hhhHHh---------------hhcCchhhH-----------hhhhhhhhHH-HHHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 452 WFDSVF---------------ADIGDEQSL-----------SQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 452 ~~~~i~---------------~~ig~~~si-----------~~~lstfs~~-~~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
+.+++. ...+..+.+ ...-..+|++ .+|+..+.+++.+|++|||||||+++|+
T Consensus 433 v~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~ 512 (587)
T 3qf4_A 433 IKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDP 512 (587)
T ss_dssp HHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCH
T ss_pred HHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 122221 111111111 1112356655 4567777778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
.....+.. .++.+ ..|.| +|++||+.+....||++..+.+|++..++
T Consensus 513 ~~~~~i~~-~l~~~-~~~~t-vi~itH~l~~~~~~d~i~vl~~G~i~~~g 559 (587)
T 3qf4_A 513 ITEKRILD-GLKRY-TKGCT-TFIITQKIPTALLADKILVLHEGKVAGFG 559 (587)
T ss_dssp HHHHHHHH-HHHHH-STTCE-EEEEESCHHHHTTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHH-HHHHh-CCCCE-EEEEecChHHHHhCCEEEEEECCEEEEEC
Confidence 77777765 44444 35787 99999999998899999999999997654
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.4e-17 Score=191.68 Aligned_cols=145 Identities=14% Similarity=0.094 Sum_probs=99.0
Q ss_pred eeeeEEECCCCeEEEEEecCCCCchhhhhhcchhhhhcccccc------------cccc------------c--------
Q 003747 399 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH------------ILSS------------E-------- 446 (798)
Q Consensus 399 V~~disL~~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~------------vpa~------------~-------- 446 (798)
...++..-..|++++|+||||||||||||+|+++.... .|.. +... .
T Consensus 93 ~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~-~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 171 (608)
T 3j16_B 93 KLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPN-LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQ 171 (608)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC-TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECC
T ss_pred eecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCCCC-CceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchh
Confidence 34443333678999999999999999999997653221 1211 0000 0
Q ss_pred -cccc-----------------------chhhHHhhhcCchhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCC
Q 003747 447 -YAKV-----------------------PWFDSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAG 501 (798)
Q Consensus 447 -~~~i-----------------------~~~~~i~~~ig~~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sG 501 (798)
...+ .....++..++.........+++|++++ ++..+.+++.+|++|||||||+|
T Consensus 172 ~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~ 251 (608)
T 3j16_B 172 YVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSY 251 (608)
T ss_dssp CTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTT
T ss_pred hhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccC
Confidence 0000 0112344556666666677788887665 55555677899999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhcccccee
Q 003747 502 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFE 546 (798)
Q Consensus 502 lDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~-~a~~~~~l~ 546 (798)
||+.....+. .+++.+.+.|.| ||++|||+++.. +|+++..+.
T Consensus 252 LD~~~~~~l~-~~l~~l~~~g~t-vi~vtHdl~~~~~~~drv~vl~ 295 (608)
T 3j16_B 252 LDVKQRLNAA-QIIRSLLAPTKY-VICVEHDLSVLDYLSDFVCIIY 295 (608)
T ss_dssp CCHHHHHHHH-HHHHGGGTTTCE-EEEECSCHHHHHHHCSEEEEEE
T ss_pred CCHHHHHHHH-HHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEe
Confidence 9997777765 467777777888 999999988774 777776664
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.69 E-value=5.6e-17 Score=197.17 Aligned_cols=152 Identities=15% Similarity=0.175 Sum_probs=107.8
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhc-----ccc-ccccccc---ccccch------------
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-----KSG-LHILSSE---YAKVPW------------ 452 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~a-----q~G-~~vpa~~---~~~i~~------------ 452 (798)
+++.++++++|+ ..|++++|+||||||||||||+|++..+.. ... .+++... ...+..
T Consensus 446 g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~ 525 (986)
T 2iw3_A 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTK 525 (986)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCH
T ss_pred CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHH
Confidence 456789999999 889999999999999999999996321100 000 1222100 011111
Q ss_pred --hhHHhhhcCc-hhhHhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEE
Q 003747 453 --FDSVFADIGD-EQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIA 528 (798)
Q Consensus 453 --~~~i~~~ig~-~~si~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIi 528 (798)
...++..+|. .+......+++|++++ ++..+.+++.+|++|||||||+|||+.....+.. ++.. .|.| ||+
T Consensus 526 ~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~-~L~~---~g~t-vIi 600 (986)
T 2iw3_A 526 EAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVN-YLNT---CGIT-SIT 600 (986)
T ss_dssp HHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHH-HHHH---SCSE-EEE
T ss_pred HHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH-HHHh---CCCE-EEE
Confidence 1234556676 3556677788897765 5555567789999999999999999966666544 4433 6787 999
Q ss_pred EecchhHH-hhhccccceeeeEEE
Q 003747 529 TTHHGELK-TLKYSNDFFENACME 551 (798)
Q Consensus 529 tTHd~el~-~~a~~~~~l~ng~v~ 551 (798)
+|||.++. .+|+++..+.+|++.
T Consensus 601 vSHdl~~l~~~adrii~L~~G~iv 624 (986)
T 2iw3_A 601 ISHDSVFLDNVCEYIINYEGLKLR 624 (986)
T ss_dssp ECSCHHHHHHHCSEEEEEETTEEE
T ss_pred EECCHHHHHHhCCEEEEEECCeee
Confidence 99998877 589999999999985
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.67 E-value=1.4e-16 Score=188.72 Aligned_cols=85 Identities=16% Similarity=0.105 Sum_probs=67.2
Q ss_pred hhhhhhhHHHHH-HHHHHHhCCC---CeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccc
Q 003747 468 QSLSTFSGHLKQ-IGNIISQSTS---QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 543 (798)
Q Consensus 468 ~~lstfs~~~~r-i~~il~~a~~---psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~ 543 (798)
....++|+++++ +..+.+++.+ |+||||||||+||||.....+.. ++..+.+.|.| ||++|||+++..+|+++.
T Consensus 539 ~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~-~l~~l~~~g~t-vi~vtHd~~~~~~~d~i~ 616 (670)
T 3ux8_A 539 QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLD-VLHRLVDNGDT-VLVIEHNLDVIKTADYII 616 (670)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCE-EEEECCCHHHHTTCSEEE
T ss_pred CCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCE-EEEEeCCHHHHHhCCEEE
Confidence 445678877655 4444555554 46999999999999988777754 66777777888 999999999988899988
Q ss_pred ce------eeeEEEEec
Q 003747 544 FF------ENACMEFDE 554 (798)
Q Consensus 544 ~l------~ng~v~fd~ 554 (798)
.+ .+|.+.+++
T Consensus 617 ~l~~~~g~~~G~i~~~g 633 (670)
T 3ux8_A 617 DLGPEGGDRGGQIVAVG 633 (670)
T ss_dssp EEESSSGGGCCEEEEEE
T ss_pred EecCCcCCCCCEEEEec
Confidence 88 789998765
No 60
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.65 E-value=2.6e-17 Score=162.04 Aligned_cols=132 Identities=11% Similarity=0.036 Sum_probs=77.2
Q ss_pred eEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh----cccccccccccccccchhhHHhh----------hcCchhhH
Q 003747 402 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGLHILSSEYAKVPWFDSVFA----------DIGDEQSL 466 (798)
Q Consensus 402 disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~----aq~G~~vpa~~~~~i~~~~~i~~----------~ig~~~si 466 (798)
+++|+ +.|++++|+||||||||||+|++...... ...|...+. . ....+....+. ..|....
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~- 77 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDD-E-NDQTVTGAAFDVLHYIVSKRLQLGKLTV- 77 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSS-T-TCGGGHHHHHHHHHHHHHHHHHTTCCEE-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCc-c-cchhhHHHHHHHHHHHHHHHHhCCCeEE-
Confidence 35666 67899999999999999999964211000 001211111 1 11111111111 1111100
Q ss_pred hhhhhhhhHH-HHHHHHHHHhCCCCeEEEEecCCCCCChH----------------HHHHHHHHHHHHHHhcCCcEEEEE
Q 003747 467 SQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPL----------------EGTALGMSLLEAFAESGSLLTIAT 529 (798)
Q Consensus 467 ~~~lstfs~~-~~ri~~il~~a~~psLLLLDEP~sGlDp~----------------eg~al~~all~~L~~~g~t~VIit 529 (798)
.......+++ .+++..+.+++.+|.+|+|||||+|+|+. ....+ ..++..+.+.|.| +|++
T Consensus 78 ~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l-~~~l~~l~~~g~t-vi~v 155 (171)
T 4gp7_A 78 VDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQM-KKSIKGLQREGFR-YVYI 155 (171)
T ss_dssp EESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHH-HHHSTTHHHHTCS-EEEE
T ss_pred EECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHh-hhhhhhHHhcCCc-EEEE
Confidence 0111122444 45566666778999999999999999996 22443 3455556667988 9999
Q ss_pred ecchhHHhh
Q 003747 530 THHGELKTL 538 (798)
Q Consensus 530 THd~el~~~ 538 (798)
|||++....
T Consensus 156 tH~~~~~~~ 164 (171)
T 4gp7_A 156 LNSPEEVEE 164 (171)
T ss_dssp ECSHHHHHH
T ss_pred eCCHHHhhh
Confidence 999888653
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.64 E-value=1.2e-16 Score=194.16 Aligned_cols=92 Identities=20% Similarity=0.111 Sum_probs=67.8
Q ss_pred hhhcCchhh--HhhhhhhhhHHHH-HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecch
Q 003747 457 FADIGDEQS--LSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 533 (798)
Q Consensus 457 ~~~ig~~~s--i~~~lstfs~~~~-ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~ 533 (798)
+..+|.... .....+++|++++ ++..+.+++.+|+||||||||+|||+.....+ .+.+.+.+.+ ||++|||.
T Consensus 884 Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L----~~~L~~~g~t-VIiISHD~ 958 (986)
T 2iw3_A 884 CSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL----SKALKEFEGG-VIIITHSA 958 (986)
T ss_dssp HHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHH----HHHHHSCSSE-EEEECSCH
T ss_pred HHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHH----HHHHHHhCCE-EEEEECCH
Confidence 344555432 3455678887654 56666678999999999999999999654444 4455566777 99999999
Q ss_pred hHH-hhhccccceeeeEEEEe
Q 003747 534 ELK-TLKYSNDFFENACMEFD 553 (798)
Q Consensus 534 el~-~~a~~~~~l~ng~v~fd 553 (798)
++. .+|+++..+.+|.+..+
T Consensus 959 e~v~~l~DrVivL~~G~Iv~~ 979 (986)
T 2iw3_A 959 EFTKNLTEEVWAVKDGRMTPS 979 (986)
T ss_dssp HHHTTTCCEEECCBTTBCCC-
T ss_pred HHHHHhCCEEEEEECCEEEEe
Confidence 887 58999999988887543
No 62
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.59 E-value=2e-15 Score=167.78 Aligned_cols=109 Identities=21% Similarity=0.212 Sum_probs=76.1
Q ss_pred hhHHH-HHHHHHHHhCCCC--eEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccce----
Q 003747 473 FSGHL-KQIGNIISQSTSQ--SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF---- 545 (798)
Q Consensus 473 fs~~~-~ri~~il~~a~~p--sLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l---- 545 (798)
+|+++ +++..++.++.+| ++|||||||+|||+.....+.. ++..+. .|++ ||+|||+.++..+|+++..+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~-~L~~l~-~~~~-vi~itH~~~~~~~~d~i~~l~k~~ 372 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAE-QLSRLA-DTRQ-VLVVTHLAQIAARAHHHYKVEKQV 372 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHH-HHHHHT-TTSE-EEEECSCHHHHTTCSEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHh-CCCE-EEEEeCcHHHHhhcCeEEEEEEec
Confidence 47655 5566666677888 9999999999999977777755 555565 5787 99999999998899988888
Q ss_pred eeeEEEEecccceeeEEeecCCCCCchHHHHHHHc-C-CChHHHHHHHHHH
Q 003747 546 ENACMEFDEVKLKPTYKILWGVPGRSSAINIAERL-G-LPGIVVQNARQLY 594 (798)
Q Consensus 546 ~ng~v~fd~~~l~ptY~L~~G~~g~S~a~~iA~~~-g-l~~~ii~~A~~~~ 594 (798)
.+|.+......+ .....-.++|+.+ | +.+..+..|++++
T Consensus 373 ~~G~~~~~~~~l----------~~~~~~~ei~~~~~g~~~~~~~~~a~~~~ 413 (415)
T 4aby_A 373 EDGRTVSHVRLL----------TGDERLEEIARMLSGNTSEAALEHARELL 413 (415)
T ss_dssp ETTEEEEEEEEC----------CSHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred cCCceEEEEEEC----------CchhhHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 667665432211 1112234566655 3 4566677777665
No 63
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.58 E-value=1.3e-15 Score=167.95 Aligned_cols=81 Identities=12% Similarity=0.107 Sum_probs=64.0
Q ss_pred hhhhhhHHHHHH-HHHHHhC------CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcc
Q 003747 469 SLSTFSGHLKQI-GNIISQS------TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 541 (798)
Q Consensus 469 ~lstfs~~~~ri-~~il~~a------~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~ 541 (798)
..+++|+++++. ..+.+++ .+|++|||||||+||||.....+. .++..+.+.|.| ||++|||+++..++++
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~-~~l~~l~~~g~t-vi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIA-SVLKELERLNKV-IVFITHDREFSEAFDR 353 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHH-HHHHGGGGSSSE-EEEEESCHHHHTTCSC
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCCE-EEEEecchHHHHhCCE
Confidence 344677766554 4444444 699999999999999997777765 466777777888 9999999999888999
Q ss_pred ccceeeeEEE
Q 003747 542 NDFFENACME 551 (798)
Q Consensus 542 ~~~l~ng~v~ 551 (798)
+..+.+|.+.
T Consensus 354 ~~~l~~G~i~ 363 (365)
T 3qf7_A 354 KLRITGGVVV 363 (365)
T ss_dssp EEEEETTEEC
T ss_pred EEEEECCEEE
Confidence 9999988875
No 64
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.57 E-value=6.9e-15 Score=177.17 Aligned_cols=86 Identities=20% Similarity=0.178 Sum_probs=67.9
Q ss_pred hhhhhhhhHHHHH-HHHHHHhCCC---CeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccc
Q 003747 467 SQSLSTFSGHLKQ-IGNIISQSTS---QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 542 (798)
Q Consensus 467 ~~~lstfs~~~~r-i~~il~~a~~---psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~ 542 (798)
.+...++|+++++ +..+..++.+ |+||||||||+|||+.....+. .++..+.+.|.| ||++|||+++..+|+++
T Consensus 725 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~t-VIvisHdl~~i~~aDri 802 (842)
T 2vf7_A 725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQ-RQLVKLVDAGNT-VIAVEHKMQVVAASDWV 802 (842)
T ss_dssp TCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTCE-EEEECCCHHHHTTCSEE
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCE-EEEEcCCHHHHHhCCEE
Confidence 4556778876654 4444555664 7999999999999998877775 467778888998 99999999988889998
Q ss_pred cce------eeeEEEEec
Q 003747 543 DFF------ENACMEFDE 554 (798)
Q Consensus 543 ~~l------~ng~v~fd~ 554 (798)
..+ .+|.+.++.
T Consensus 803 i~L~p~~g~~~G~Iv~~g 820 (842)
T 2vf7_A 803 LDIGPGAGEDGGRLVAQG 820 (842)
T ss_dssp EEECSSSGGGCCSEEEEE
T ss_pred EEECCCCCCCCCEEEEEc
Confidence 888 588887654
No 65
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.54 E-value=7.9e-15 Score=178.00 Aligned_cols=85 Identities=20% Similarity=0.153 Sum_probs=67.7
Q ss_pred hhhhhhhHHHHH-HHHHHHhCCC---CeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccc
Q 003747 468 QSLSTFSGHLKQ-IGNIISQSTS---QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 543 (798)
Q Consensus 468 ~~lstfs~~~~r-i~~il~~a~~---psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~ 543 (798)
+..+++||++++ +..+.+++.+ |+||||||||+|||+.+...+. .++..+.+.|.| ||++|||+++...||+++
T Consensus 801 q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~-~lL~~L~~~G~T-VIvI~HdL~~i~~ADrIi 878 (916)
T 3pih_A 801 QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLV-EVLHRLVDRGNT-VIVIEHNLDVIKNADHII 878 (916)
T ss_dssp CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCE-EEEECCCHHHHTTCSEEE
T ss_pred CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHhCCEEE
Confidence 445678876654 4555555544 5899999999999998877775 467778888998 999999999988899998
Q ss_pred ce------eeeEEEEec
Q 003747 544 FF------ENACMEFDE 554 (798)
Q Consensus 544 ~l------~ng~v~fd~ 554 (798)
.+ .+|.+.+.+
T Consensus 879 vLgp~gg~~~G~Iv~~G 895 (916)
T 3pih_A 879 DLGPEGGKEGGYIVATG 895 (916)
T ss_dssp EEESSSGGGCCEEEEEE
T ss_pred EecCCCCCCCCEEEEEc
Confidence 88 789998865
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.54 E-value=1.9e-14 Score=174.61 Aligned_cols=87 Identities=15% Similarity=0.109 Sum_probs=68.1
Q ss_pred HhhhhhhhhHHHH-HHHHHHHhCCC---CeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcc
Q 003747 466 LSQSLSTFSGHLK-QIGNIISQSTS---QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 541 (798)
Q Consensus 466 i~~~lstfs~~~~-ri~~il~~a~~---psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~ 541 (798)
+.+...++|++++ ++..+..++.+ |+||||||||+|||+.....+.. ++..+.+.|.| ||++|||+++..+|++
T Consensus 857 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L~~~G~T-VIvisHdl~~i~~aDr 934 (993)
T 2ygr_A 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLN-VINGLVDKGNT-VIVIEHNLDVIKTSDW 934 (993)
T ss_dssp TTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCE-EEEECCCHHHHTTCSE
T ss_pred ccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCE-EEEEcCCHHHHHhCCE
Confidence 3455677887665 55555566654 59999999999999987777754 66778888988 9999999999888999
Q ss_pred ccce------eeeEEEEec
Q 003747 542 NDFF------ENACMEFDE 554 (798)
Q Consensus 542 ~~~l------~ng~v~fd~ 554 (798)
+..+ .+|.+.+++
T Consensus 935 IivL~p~gg~~~G~Iv~~G 953 (993)
T 2ygr_A 935 IIDLGPEGGAGGGTVVAQG 953 (993)
T ss_dssp EEEEESSSTTSCSEEEEEE
T ss_pred EEEECCCcCCCCCEEEEec
Confidence 8888 578887654
No 67
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.53 E-value=1.5e-14 Score=175.06 Aligned_cols=87 Identities=16% Similarity=0.115 Sum_probs=67.6
Q ss_pred HhhhhhhhhHHHH-HHHHHHHhCCC---CeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcc
Q 003747 466 LSQSLSTFSGHLK-QIGNIISQSTS---QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 541 (798)
Q Consensus 466 i~~~lstfs~~~~-ri~~il~~a~~---psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~ 541 (798)
+.+...++|++++ ++..+..++.+ |+||||||||+|||+.....+.. ++..+.+.|.| ||++|||+++..+|++
T Consensus 839 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L~~~G~T-VIvisHdl~~i~~aDr 916 (972)
T 2r6f_A 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLD-VLHRLVDNGDT-VLVIEHNLDVIKTADY 916 (972)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCE-EEEECCCHHHHTTCSE
T ss_pred ccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCE-EEEEcCCHHHHHhCCE
Confidence 3455677887665 55555566654 59999999999999988777754 66778888988 9999999998888998
Q ss_pred ccce------eeeEEEEec
Q 003747 542 NDFF------ENACMEFDE 554 (798)
Q Consensus 542 ~~~l------~ng~v~fd~ 554 (798)
+..+ .+|.+.+++
T Consensus 917 IivL~p~gG~~~G~Iv~~g 935 (972)
T 2r6f_A 917 IIDLGPEGGDRGGQIVAVG 935 (972)
T ss_dssp EEEECSSSTTSCCSEEEEE
T ss_pred EEEEcCCCCCCCCEEEEec
Confidence 8888 578887643
No 68
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.51 E-value=2.3e-14 Score=180.74 Aligned_cols=153 Identities=12% Similarity=0.090 Sum_probs=102.1
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc-----cc---------------cccccccccc--cchh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG---------------LHILSSEYAK--VPWF 453 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-----~G---------------~~vpa~~~~~--i~~~ 453 (798)
.++++|++|+ +.|++++|+||||||||||+++|.++.-... .| .++|. +..- -.+.
T Consensus 403 ~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q-~~~l~~~ti~ 481 (1284)
T 3g5u_A 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQ-EPVLFATTIA 481 (1284)
T ss_dssp CCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECS-SCCCCSSCHH
T ss_pred CcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcC-CCccCCccHH
Confidence 4699999999 8999999999999999999999965432211 00 12222 1100 0112
Q ss_pred hHHh---------------hhcCchhhHhh-----------hhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHH
Q 003747 454 DSVF---------------ADIGDEQSLSQ-----------SLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 506 (798)
Q Consensus 454 ~~i~---------------~~ig~~~si~~-----------~lstfs~~~-~ri~~il~~a~~psLLLLDEP~sGlDp~e 506 (798)
+++. ...+..+.+.. .-..+|+++ +|+..+.+++.+|++|||||||++||+..
T Consensus 482 eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~ 561 (1284)
T 3g5u_A 482 ENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561 (1284)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHH
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 2221 11111121111 112567655 56666667789999999999999999965
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEe
Q 003747 507 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 553 (798)
Q Consensus 507 g~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd 553 (798)
.. .....++.+. .|+| +|++||+.+....||++..+.+|++...
T Consensus 562 ~~-~i~~~l~~~~-~~~t-~i~itH~l~~i~~~d~i~vl~~G~i~~~ 605 (1284)
T 3g5u_A 562 EA-VVQAALDKAR-EGRT-TIVIAHRLSTVRNADVIAGFDGGVIVEQ 605 (1284)
T ss_dssp HH-HHHHHHHHHH-TTSE-EEEECSCHHHHTTCSEEEECSSSCCCCE
T ss_pred HH-HHHHHHHHHc-CCCE-EEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 44 4445555543 4787 9999999998888999999999998654
No 69
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.50 E-value=2e-14 Score=181.24 Aligned_cols=155 Identities=13% Similarity=0.085 Sum_probs=102.7
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcc--------------------cccccccccc-cccchhh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEY-AKVPWFD 454 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq--------------------~G~~vpa~~~-~~i~~~~ 454 (798)
.+++++++|+ +.|++++|+||||||||||+++|.++..... .-.++|.... ....+.+
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~e 1125 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAE 1125 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHH
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHH
Confidence 3588999999 8899999999999999999999965432211 0112332110 0001112
Q ss_pred HHh-----------------hhcCchhhHhh---h--------hhhhhHH-HHHHHHHHHhCCCCeEEEEecCCCCCChH
Q 003747 455 SVF-----------------ADIGDEQSLSQ---S--------LSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPL 505 (798)
Q Consensus 455 ~i~-----------------~~ig~~~si~~---~--------lstfs~~-~~ri~~il~~a~~psLLLLDEP~sGlDp~ 505 (798)
++. ...+..+.+.. + -..+||+ .+++..+.+++.+|++|||||||+|+|+.
T Consensus 1126 Ni~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~ 1205 (1284)
T 3g5u_A 1126 NIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE 1205 (1284)
T ss_dssp HHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHH
T ss_pred HHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 221 11111111111 1 1246655 45666667778999999999999999996
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 506 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 506 eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
....+.. .++.+ ..|+| +|++||+++....||++..+.+|++...+
T Consensus 1206 ~~~~i~~-~l~~~-~~~~t-vi~isH~l~~i~~~dri~vl~~G~i~~~g 1251 (1284)
T 3g5u_A 1206 SEKVVQE-ALDKA-REGRT-CIVIAHRLSTIQNADLIVVIQNGKVKEHG 1251 (1284)
T ss_dssp HHHHHHH-HHHHH-SSSSC-EEEECSCTTGGGSCSEEEEEETBEEEEEE
T ss_pred HHHHHHH-HHHHh-CCCCE-EEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 6555544 45443 45788 99999999888889999999999997654
No 70
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.47 E-value=1.2e-13 Score=174.71 Aligned_cols=154 Identities=14% Similarity=0.094 Sum_probs=104.5
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------cccccccccc--cc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAK--VP 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~~~--i~ 451 (798)
+.++++|++|+ +.|+.++|+||+|||||||+++|.+..-+. .| .++|. +..- -.
T Consensus 430 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~-~G~I~idG~~i~~~~~~~lr~~i~~v~Q-~~~Lf~~T 507 (1321)
T 4f4c_A 430 DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL-KGKITIDGVDVRDINLEFLRKNVAVVSQ-EPALFNCT 507 (1321)
T ss_dssp TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS-EEEEEETTEETTTSCHHHHHHHEEEECS-SCCCCSEE
T ss_pred CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc-cCcccCCCccchhccHHHHhhcccccCC-cceeeCCc
Confidence 46799999999 999999999999999999999995432211 11 12222 1000 01
Q ss_pred hhhHHh---------------hhcCchhhHhh---hh--------hhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCCCh
Q 003747 452 WFDSVF---------------ADIGDEQSLSQ---SL--------STFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNP 504 (798)
Q Consensus 452 ~~~~i~---------------~~ig~~~si~~---~l--------stfs~-~~~ri~~il~~a~~psLLLLDEP~sGlDp 504 (798)
+.+++. ...+..+.+.. +. ..+|| +.+|+..+.+...+|+++|||||||++|+
T Consensus 508 I~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~ 587 (1321)
T 4f4c_A 508 IEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDA 587 (1321)
T ss_dssp HHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCT
T ss_pred hhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCH
Confidence 122221 11122222221 11 13454 56677888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 505 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 505 ~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
... .+....+..+. +|.| +|++||.......||+++.+.+|++...+
T Consensus 588 ~te-~~i~~~l~~~~-~~~T-~iiiaHrls~i~~aD~Iivl~~G~ive~G 634 (1321)
T 4f4c_A 588 ESE-GIVQQALDKAA-KGRT-TIIIAHRLSTIRNADLIISCKNGQVVEVG 634 (1321)
T ss_dssp TTH-HHHHHHHHHHH-TTSE-EEEECSCTTTTTTCSEEEEEETTEEEEEE
T ss_pred HHH-HHHHHHHHHHh-CCCE-EEEEcccHHHHHhCCEEEEeeCCeeeccC
Confidence 654 44444555544 4777 89999999999999999999999997643
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.45 E-value=4.4e-14 Score=140.65 Aligned_cols=126 Identities=12% Similarity=0.050 Sum_probs=72.7
Q ss_pred EEEEEecCCCCchhhhhhcchhhhhcccccccccc----cccccchh-------hHHhhhcCch--hhHhhhhhhhhHHH
Q 003747 411 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSS----EYAKVPWF-------DSVFADIGDE--QSLSQSLSTFSGHL 477 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~----~~~~i~~~-------~~i~~~ig~~--~si~~~lstfs~~~ 477 (798)
.++|+||||||||||||+|++..-..-.|...... ....+++. +.++..++.. .........+|+++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 48999999999999999997654222223221100 01111211 1111111111 12334455688777
Q ss_pred HHHHHHHH------hCCCCeEEEEec--CCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEec---chhHHh-hhcc
Q 003747 478 KQIGNIIS------QSTSQSLVLLDE--IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH---HGELKT-LKYS 541 (798)
Q Consensus 478 ~ri~~il~------~a~~psLLLLDE--P~sGlDp~eg~al~~all~~L~~~g~t~VIitTH---d~el~~-~a~~ 541 (798)
++...++. ++.+|+++|||| |++++|+.....+ .+.+.+.+.+ +|++|| +.++.. ++++
T Consensus 82 ~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l----~~~l~~~~~~-~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLV----RQIMHDPNVN-VVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHH----HHHHTCTTSE-EEEECCSSCCSHHHHHHHTC
T ss_pred HHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHH----HHHHhcCCCe-EEEEEccCCCchHHHHHHhc
Confidence 65544443 589999999999 9999999554444 3344445665 677775 666654 5554
No 72
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.42 E-value=1.8e-14 Score=147.11 Aligned_cols=121 Identities=12% Similarity=0.162 Sum_probs=66.7
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccc------c-ccccccchhhH-----H-------hhhcC---chh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL------S-SEYAKVPWFDS-----V-------FADIG---DEQ 464 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vp------a-~~~~~i~~~~~-----i-------~~~ig---~~~ 464 (798)
..|++++|+||||||||||||+|+++ .. ..|.... . .....++++.+ + +..+. ..+
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p-~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~~~ 97 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL-QSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVEPE 97 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HH-HTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTSCTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CC-cCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhccHH
Confidence 46789999999999999999999887 33 2332210 0 00111222111 1 00000 011
Q ss_pred hHhhhhhhhhHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh
Q 003747 465 SLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 537 (798)
Q Consensus 465 si~~~lstfs~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~ 537 (798)
.+...+..-.|+.+++..+.+++.+|++|||||||+| ....+ ..++..+ ..|.| || +|||.+...
T Consensus 98 ~~~~~l~~glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l-~~~l~~l-~~g~t-ii-vtHd~~~~~ 162 (208)
T 3b85_A 98 VIPKLMEAGIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQM-KMFLTRL-GFGSK-MV-VTGDITQVD 162 (208)
T ss_dssp HHHHHHHTTSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHH-HHHHTTB-CTTCE-EE-EEEC-----
T ss_pred HHHHHHHhCCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHH-HHHHHHh-cCCCE-EE-EECCHHHHh
Confidence 1111111101455566667778999999999999999 33333 3455555 55777 78 999988755
No 73
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.41 E-value=3.9e-13 Score=145.36 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=56.0
Q ss_pred hhhhhHHHHHHHHHHH-hC----CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccc--
Q 003747 470 LSTFSGHLKQIGNIIS-QS----TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN-- 542 (798)
Q Consensus 470 lstfs~~~~ri~~il~-~a----~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~-- 542 (798)
.+.+|+++++...++. ++ .+|++|||||||++|||.....+.. ++..+. .|.+ ||+|||+.++..+|+++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~-~~~~-vi~~tH~~~~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR-LLKENS-KHTQ-FIVITHNKIVMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH-HHHHHT-TTSE-EEEECCCTTGGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhc-CCCe-EEEEECCHHHHhhCceEEE
Confidence 3567777766555443 33 6889999999999999977777755 555553 4777 89999998877788765
Q ss_pred cceeeeEE
Q 003747 543 DFFENACM 550 (798)
Q Consensus 543 ~~l~ng~v 550 (798)
+.+.+|.-
T Consensus 294 v~~~~g~s 301 (322)
T 1e69_A 294 VTMVNGVS 301 (322)
T ss_dssp EEESSSCE
T ss_pred EEEeCCEE
Confidence 44555543
No 74
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.41 E-value=3e-13 Score=171.09 Aligned_cols=154 Identities=12% Similarity=0.119 Sum_probs=102.0
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---------------------ccccccccccc--c
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 451 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---------------------~~vpa~~~~~i--~ 451 (798)
+.+|++|++|+ ++|+.++|+||+|||||||+++|.++.-+. .| .++|. +..-+ .
T Consensus 1091 ~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~-~G~I~iDG~di~~i~~~~lR~~i~~V~Q-dp~LF~gT 1168 (1321)
T 4f4c_A 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL-GGEIFIDGSEIKTLNPEHTRSQIAIVSQ-EPTLFDCS 1168 (1321)
T ss_dssp SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS-SSEEEETTEETTTBCHHHHHTTEEEECS-SCCCCSEE
T ss_pred CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC-CCEEEECCEEhhhCCHHHHHhheEEECC-CCEeeCcc
Confidence 34699999999 899999999999999999999995442211 11 12332 11100 1
Q ss_pred hhhHH-----------------hhhcCchhhHhh---hh--------hhhhH-HHHHHHHHHHhCCCCeEEEEecCCCCC
Q 003747 452 WFDSV-----------------FADIGDEQSLSQ---SL--------STFSG-HLKQIGNIISQSTSQSLVLLDEIGAGT 502 (798)
Q Consensus 452 ~~~~i-----------------~~~ig~~~si~~---~l--------stfs~-~~~ri~~il~~a~~psLLLLDEP~sGl 502 (798)
+.+++ +...+..+.+.. ++ ..+|+ +.|++..+.+++.+|++||||||||++
T Consensus 1169 IreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaL 1248 (1321)
T 4f4c_A 1169 IAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSAL 1248 (1321)
T ss_dssp HHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCST
T ss_pred HHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccC
Confidence 11221 111222222221 11 23565 456677777789999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 503 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 503 Dp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
|+..-..+ ...++.+ ..|+| +|+++|.+.-...||++..+.+|++...+
T Consensus 1249 D~~tE~~I-q~~l~~~-~~~~T-vI~IAHRLsTi~~aD~I~Vld~G~IvE~G 1297 (1321)
T 4f4c_A 1249 DTESEKVV-QEALDRA-REGRT-CIVIAHRLNTVMNADCIAVVSNGTIIEKG 1297 (1321)
T ss_dssp TSHHHHHH-HHHHTTT-SSSSE-EEEECSSSSTTTTCSEEEEESSSSEEEEE
T ss_pred CHHHHHHH-HHHHHHH-cCCCE-EEEeccCHHHHHhCCEEEEEECCEEEEEC
Confidence 99544433 3333322 24777 99999999888899999999999997644
No 75
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.39 E-value=3.5e-13 Score=138.05 Aligned_cols=59 Identities=15% Similarity=0.092 Sum_probs=43.8
Q ss_pred CCCCeEEEEecCCCCCC----hHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH----------hhh-cccccee
Q 003747 487 STSQSLVLLDEIGAGTN----PLEGTALGMSLLEAFAESGSLLTIATTHHGELK----------TLK-YSNDFFE 546 (798)
Q Consensus 487 a~~psLLLLDEP~sGlD----p~eg~al~~all~~L~~~g~t~VIitTHd~el~----------~~a-~~~~~l~ 546 (798)
..+|++|+||||++++| +.........+++.+.+.|+| ||++||+.+.. .+| |++..+.
T Consensus 133 ~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~t-ii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVT-TILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCE-EEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCe-EEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 47999999999999986 345555456788888888998 99999997765 466 6666554
No 76
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.38 E-value=1e-12 Score=143.17 Aligned_cols=75 Identities=20% Similarity=0.157 Sum_probs=56.7
Q ss_pred hhhhhHHHHH-------HHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccc
Q 003747 470 LSTFSGHLKQ-------IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 542 (798)
Q Consensus 470 lstfs~~~~r-------i~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~ 542 (798)
+..+|+++++ +..+..++.+|++|||||||+||||.....+.. ++..+...|.+ ||++||+.++..+|+++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~~~~-vi~~sH~~~~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQ-VILVSHDEELKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHH-HHHHTGGGSSE-EEEEESCGGGGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhcCCE-EEEEEChHHHHHhCCEE
Confidence 3557777765 333445678999999999999999977777654 56666666777 89999998887888776
Q ss_pred ccee
Q 003747 543 DFFE 546 (798)
Q Consensus 543 ~~l~ 546 (798)
..+.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6553
No 77
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.36 E-value=5.4e-14 Score=159.65 Aligned_cols=131 Identities=12% Similarity=0.059 Sum_probs=81.9
Q ss_pred eEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc-c-------------ccccccc-----cccchhhH------
Q 003747 402 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-L-------------HILSSEY-----AKVPWFDS------ 455 (798)
Q Consensus 402 disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G-~-------------~vpa~~~-----~~i~~~~~------ 455 (798)
++++. ..|++++|+||||||||||+|+|+++.... .| . ++|.... ..+...+.
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~-~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~ 208 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF-NAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSL 208 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH-HCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc-CCceeEEEcCCccCCeeeeccchhhcccccccchhhhhccccc
Confidence 45555 678999999999999999999997654322 12 1 2222100 00011111
Q ss_pred ------------HhhhcCchhhHhhhhhhhhHHH-HHHHHHHH--hCCCCeE----EEEec-CCCCCChHHHHHHHHHHH
Q 003747 456 ------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIIS--QSTSQSL----VLLDE-IGAGTNPLEGTALGMSLL 515 (798)
Q Consensus 456 ------------i~~~ig~~~si~~~lstfs~~~-~ri~~il~--~a~~psL----LLLDE-P~sGlDp~eg~al~~all 515 (798)
++..+|..+... ...+|+++ +++..+.+ ++.+|++ ||||| ||+|+|+. . ..+.
T Consensus 209 ~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~--~---~~l~ 281 (460)
T 2npi_A 209 TSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN--L---AELH 281 (460)
T ss_dssp BSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS--C---HHHH
T ss_pred ccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh--H---HHHH
Confidence 122233333222 45666554 56666677 8899999 99999 99999996 2 2233
Q ss_pred HHHHhcCCcEEEEEecchh------HH-hhhcc
Q 003747 516 EAFAESGSLLTIATTHHGE------LK-TLKYS 541 (798)
Q Consensus 516 ~~L~~~g~t~VIitTHd~e------l~-~~a~~ 541 (798)
+.+.+.+.+ +|++||+.+ +. .+|++
T Consensus 282 ~l~~~~~~t-viiVth~~~~~l~~~~~~~~~dr 313 (460)
T 2npi_A 282 HIIEKLNVN-IMLVLCSETDPLWEKVKKTFGPE 313 (460)
T ss_dssp HHHHHTTCC-EEEEECCSSCTHHHHHHHHHHHH
T ss_pred HHHHHhCCC-EEEEEccCchhhhHHHHHHhccc
Confidence 344455888 899999876 33 57776
No 78
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.29 E-value=1.1e-13 Score=139.93 Aligned_cols=58 Identities=12% Similarity=-0.125 Sum_probs=42.6
Q ss_pred hCCCCeEEEEecCCCCC----ChHHHHHHHHHHHHHHH-hcCCcEEEEEecchhHH-hhhccccce
Q 003747 486 QSTSQSLVLLDEIGAGT----NPLEGTALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFF 545 (798)
Q Consensus 486 ~a~~psLLLLDEP~sGl----Dp~eg~al~~all~~L~-~~g~t~VIitTHd~el~-~~a~~~~~l 545 (798)
++.+|++++||||++|+ |+.....+. .++..+. +.|.| +|++|||++.+ .+|+++..+
T Consensus 138 l~~~p~~~~LDep~~~l~~~~d~~~~~~l~-~~l~~l~~~~g~t-vi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 138 FLAPPSWQDLQARLIGRGTETADVIQRRLD-TARIELAAQGDFD-KVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp EEECSCHHHHHHHHHTTSCSCHHHHHHHHH-HHHHHHHGGGGSS-EEEECSSHHHHHHHHHHHHC-
T ss_pred EEECCCHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHhhhccCc-EEEECCCHHHHHHHHHHHHHh
Confidence 35689999999999998 564555554 4566665 45888 89999998877 478877654
No 79
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.28 E-value=2e-12 Score=130.77 Aligned_cols=140 Identities=12% Similarity=0.110 Sum_probs=73.7
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhhc-ccc------cccccccccccchhhHHhhhcCch-hhHhhhhh---hhh-
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMMA-KSG------LHILSSEYAKVPWFDSVFADIGDE-QSLSQSLS---TFS- 474 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~a-q~G------~~vpa~~~~~i~~~~~i~~~ig~~-~si~~~ls---tfs- 474 (798)
+.|++++|+||||||||||+++|++..... ..| .++..........+..++..++.. +.+..++. .+.
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNS 102 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecCCh
Confidence 468999999999999999999997644331 111 122221100001112233333332 12222211 111
Q ss_pred HHH----HHHHHHHH----hCCCCeEEEEecCCCCCChHH------------HHHHHHHHHHHHHhcCCcEEEEEecchh
Q 003747 475 GHL----KQIGNIIS----QSTSQSLVLLDEIGAGTNPLE------------GTALGMSLLEAFAESGSLLTIATTHHGE 534 (798)
Q Consensus 475 ~~~----~ri~~il~----~a~~psLLLLDEP~sGlDp~e------------g~al~~all~~L~~~g~t~VIitTHd~e 534 (798)
.+. ..+..++. ...+|++|+||||++++|+.. ...+...+.+...+.|+| ||++||+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~t-vi~vtH~~~ 181 (231)
T 4a74_A 103 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIA-VFVTNQVQA 181 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEEECC-
T ss_pred HHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCe-EEEEeeccc
Confidence 111 11222221 156999999999999998831 124444444444566888 999999543
Q ss_pred H----H-hhhccccceee
Q 003747 535 L----K-TLKYSNDFFEN 547 (798)
Q Consensus 535 l----~-~~a~~~~~l~n 547 (798)
. . .+++.+..+.+
T Consensus 182 ~~g~~~~~~~d~~l~l~~ 199 (231)
T 4a74_A 182 NGGHILAHSATLRVYLRK 199 (231)
T ss_dssp --------CCSEEEEEEE
T ss_pred CcchhhHhhceEEEEEEe
Confidence 2 3 45666555554
No 80
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.22 E-value=8.1e-12 Score=132.68 Aligned_cols=150 Identities=17% Similarity=0.138 Sum_probs=83.1
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccc---cccccccccccchhhHHh---hhcCc-------
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---LHILSSEYAKVPWFDSVF---ADIGD------- 462 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---~~vpa~~~~~i~~~~~i~---~~ig~------- 462 (798)
..++++++++ ..|++++|+||||+|||||+++|++...... | .++.. +...-.+...+. .....
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~-e~~~~~~~~r~~~~~~~~~~~~~~~l~ 99 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAML-EESVEETAEDLIGLHNRVRLRQSDSLK 99 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEES-SSCHHHHHHHHHHHHTTCCGGGCHHHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeC-cCCHHHHHHHHHHHHcCCChhhccccc
Confidence 3466777777 7899999999999999999999976654432 3 12211 110000000100 00000
Q ss_pred ------h------hhH-h-hh--h----hhhh-HHHHHHHHHHHhCCCCeEEEEecCCC---C---CCh-HHHHHHHHHH
Q 003747 463 ------E------QSL-S-QS--L----STFS-GHLKQIGNIISQSTSQSLVLLDEIGA---G---TNP-LEGTALGMSL 514 (798)
Q Consensus 463 ------~------~si-~-~~--l----stfs-~~~~ri~~il~~a~~psLLLLDEP~s---G---lDp-~eg~al~~al 514 (798)
. +.+ . .. + ...+ .++++....+....+|++||||||++ + +|+ .....+.. .
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~-~ 178 (296)
T 1cr0_A 100 REIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMT-K 178 (296)
T ss_dssp HHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHHH-H
T ss_pred cCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHH-H
Confidence 0 000 0 00 0 1112 33344444556788999999999999 4 344 33344443 4
Q ss_pred HHHHH-hcCCcEEEEEecch-----------------------hHHhhhccccceeeeEE
Q 003747 515 LEAFA-ESGSLLTIATTHHG-----------------------ELKTLKYSNDFFENACM 550 (798)
Q Consensus 515 l~~L~-~~g~t~VIitTHd~-----------------------el~~~a~~~~~l~ng~v 550 (798)
+..++ +.|++ ||++||+. .+..+|+.+..+.++..
T Consensus 179 L~~la~~~~~~-vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 179 LKGFAKSTGVV-LVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHCCE-EEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHhCCe-EEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 45554 45888 99999994 34468888888877664
No 81
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.20 E-value=2.7e-11 Score=122.05 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=42.8
Q ss_pred CCCCe--EEEEecCCCCC--ChHHHHHHHHHHHHHHHhcCCcEEEEEecchh---------HHhhhccccceeee
Q 003747 487 STSQS--LVLLDEIGAGT--NPLEGTALGMSLLEAFAESGSLLTIATTHHGE---------LKTLKYSNDFFENA 548 (798)
Q Consensus 487 a~~ps--LLLLDEP~sGl--Dp~eg~al~~all~~L~~~g~t~VIitTHd~e---------l~~~a~~~~~l~ng 548 (798)
..+|+ +|+||||++++ |+.....+...+.+...+.|++ ||++||+.. +..+|+.+..+...
T Consensus 119 ~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~-vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 119 KLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFT-IYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEE-EEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCe-EEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 35888 99999999877 9977777766554444556887 999999972 45677777666543
No 82
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.16 E-value=3.6e-12 Score=138.81 Aligned_cols=129 Identities=11% Similarity=0.098 Sum_probs=81.2
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhh--hH
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTF--SG 475 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstf--s~ 475 (798)
++.++++. ..|++++|+|||||||||||++|+++... ..|...-. ....+.. .. .. ..++.+ .+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~-~~~e~~~-~~------~~----~~i~~~~ggg 226 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIE-DTEEIVF-KH------HK----NYTQLFFGGN 226 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEE-SSCCCCC-SS------CS----SEEEEECBTT
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEEC-Ceecccc-cc------ch----hEEEEEeCCC
Confidence 66777777 67789999999999999999999655332 22322111 0001100 00 00 001111 34
Q ss_pred HHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccceeeeE
Q 003747 476 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENAC 549 (798)
Q Consensus 476 ~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ng~ 549 (798)
..++.....++..+|++||||||++ . + + ..+++.+...+.+ +|+|||+......+++...+.+|.
T Consensus 227 ~~~r~~la~aL~~~p~ilildE~~~---~-e---~-~~~l~~~~~g~~t-vi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 227 ITSADCLKSCLRMRPDRIILGELRS---S-E---A-YDFYNVLCSGHKG-TLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp BCHHHHHHHHTTSCCSEEEECCCCS---T-H---H-HHHHHHHHTTCCC-EEEEEECSSHHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHHhhhCCCEEEEcCCCh---H-H---H-HHHHHHHhcCCCE-EEEEEcccHHHHHhhhheehhcCC
Confidence 4556666667789999999999976 2 2 2 2345556544446 899999988778888887776553
No 83
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.15 E-value=2.1e-11 Score=140.35 Aligned_cols=151 Identities=15% Similarity=0.152 Sum_probs=88.0
Q ss_pred cCCcceeeeEEE-C-CCCeEEEEEecCCCCchhhhhh--cchhhhhcccccccccccc--------cccchhhHHhh---
Q 003747 394 ELAHPVPIDIFI-A-RKTRVLVITGPNTGGKTICLKT--VGLAVMMAKSGLHILSSEY--------AKVPWFDSVFA--- 458 (798)
Q Consensus 394 ~~~~~V~~disL-~-~~g~iv~ItGPNGsGKTTLLK~--Igll~~~aq~G~~vpa~~~--------~~i~~~~~i~~--- 458 (798)
.++..+++++++ + +.|++++|+||||||||||+++ ++++........++...+. ..+++..+-+.
T Consensus 22 ~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 22 RTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred cCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 345668889999 6 8899999999999999999999 4444332222223322110 11121111110
Q ss_pred ---hcCchh--hHhhhhhhhh--HHHHHHHHHHHhCCCCeEEEEecCCC-----CCChHHHHHHHHHHHHHHHhcCCcEE
Q 003747 459 ---DIGDEQ--SLSQSLSTFS--GHLKQIGNIISQSTSQSLVLLDEIGA-----GTNPLEGTALGMSLLEAFAESGSLLT 526 (798)
Q Consensus 459 ---~ig~~~--si~~~lstfs--~~~~ri~~il~~a~~psLLLLDEP~s-----GlDp~eg~al~~all~~L~~~g~t~V 526 (798)
.+.... .....+..+. ..+.++...+. -.+|.+|+||||++ ++|+.....+ ..++..+.+.|+| |
T Consensus 102 ~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS-~g~~~~lilDe~t~~~~~~~lD~~~~~~l-~~ll~~l~~~g~t-v 178 (525)
T 1tf7_A 102 KLFILDASPDPEGQEVVGGFDLSALIERINYAIQ-KYRARRVSIDSVTSVFQQYDASSVVRREL-FRLVARLKQIGAT-T 178 (525)
T ss_dssp SEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHH-HHTCSEEEEECSTTTSTTTCCHHHHHHHH-HHHHHHHHHHTCE-E
T ss_pred cEEEEecCcccchhhhhcccCHHHHHHHHHHHHH-HcCCCEEEECCHHHHHHhcCCHHHHHHHH-HHHHHHHHHCCCE-E
Confidence 000000 0000111111 11122222221 25799999999987 4588666665 5588888888998 9
Q ss_pred EEEecchhHH----------hhhccccceee
Q 003747 527 IATTHHGELK----------TLKYSNDFFEN 547 (798)
Q Consensus 527 IitTHd~el~----------~~a~~~~~l~n 547 (798)
|++||+.+.. .+||++..+.+
T Consensus 179 l~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 179 VMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp EEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred EEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 9999998752 34888888877
No 84
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.15 E-value=1.1e-10 Score=117.08 Aligned_cols=125 Identities=18% Similarity=0.104 Sum_probs=68.5
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCch-hhHhhhh-----hhhhHHHHHH
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDE-QSLSQSL-----STFSGHLKQI 480 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~-~si~~~l-----stfs~~~~ri 480 (798)
+.|++++|+||||+|||||++.++. .......++..........+..+...++.. +.+...+ +........+
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVI 95 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHH
Confidence 4678999999999999999999976 211112233321111111122233333321 1111111 1111112334
Q ss_pred HHHHHhCC-CCeEEEEecCCCCCChHH--------HHHHHHHHHHHHHhcCCcEEEEEecchh
Q 003747 481 GNIISQST-SQSLVLLDEIGAGTNPLE--------GTALGMSLLEAFAESGSLLTIATTHHGE 534 (798)
Q Consensus 481 ~~il~~a~-~psLLLLDEP~sGlDp~e--------g~al~~all~~L~~~g~t~VIitTHd~e 534 (798)
..+.+++. +|++|++|||++++|+.. ...+...+.+...+.|++ ||+++|...
T Consensus 96 ~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~-vi~~~h~~~ 157 (220)
T 2cvh_A 96 GSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIP-VIVINQVHF 157 (220)
T ss_dssp HHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCC-EEEEECSSS
T ss_pred HHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCE-EEEEeeEEE
Confidence 44444555 499999999999999732 123333333333455888 899999753
No 85
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.11 E-value=4.5e-11 Score=117.42 Aligned_cols=106 Identities=13% Similarity=0.095 Sum_probs=62.9
Q ss_pred CCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHHHhC
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQS 487 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il~~a 487 (798)
.|+.++|+||||+|||||+++++...... .|..+- .+. ...++..+ ...++.... ..++..+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-~g~~~~-----~~~-~~~~~~~~---------~~~~~~~~~--~~~~~~~ 98 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEK-KGIRGY-----FFD-TKDLIFRL---------KHLMDEGKD--TKFLKTV 98 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHH-SCCCCC-----EEE-HHHHHHHH---------HHHHHHTCC--SHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHH-cCCeEE-----EEE-HHHHHHHH---------HHHhcCchH--HHHHHHh
Confidence 46789999999999999999996543321 121110 011 01111110 011111000 0122234
Q ss_pred CCCeEEEEecCCC-CCChHHHHHHHHHHHHHHHhcCCcEEEEEecch
Q 003747 488 TSQSLVLLDEIGA-GTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 533 (798)
Q Consensus 488 ~~psLLLLDEP~s-GlDp~eg~al~~all~~L~~~g~t~VIitTHd~ 533 (798)
.+|++|+||||++ ++|+..... ...+++...+.|.+ +|+|||+.
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~-l~~ll~~~~~~~~~-ii~tsn~~ 143 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQREL-ISYIITYRYNNLKS-TIITTNYS 143 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHH-HHHHHHHHHHTTCE-EEEECCCC
T ss_pred cCCCEEEEeCCCCCcCCHHHHHH-HHHHHHHHHHcCCC-EEEEcCCC
Confidence 4899999999995 899855554 45677777777887 89999974
No 86
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.11 E-value=5.5e-11 Score=125.42 Aligned_cols=126 Identities=8% Similarity=0.042 Sum_probs=68.9
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhhc-----------ccccccccccccccchhhH---H------------hhhc
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMMA-----------KSGLHILSSEYAKVPWFDS---V------------FADI 460 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~a-----------q~G~~vpa~~~~~i~~~~~---i------------~~~i 460 (798)
..|++++|+||||+|||||++++++..... ....++...+.. -.+... + +..+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~~~~g~~~~~~~~~~~~~~l 106 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP-TAIHHRLHALGAHLSAEERQAVADGL 106 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH-HHHHHHHHHHHTTSCHHHHHHHHHHE
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH-HHHHHHHHHHHhhcChhhhhhccCce
Confidence 578999999999999999999987533221 011122221111 000001 1 0111
Q ss_pred CchhhHhhhhhhhhHHHHHHHHHHHhCCCCeEEEEecCCC--CCChHHH---HHHHHHHHHHHHhcCCcEEEEEecchhH
Q 003747 461 GDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGA--GTNPLEG---TALGMSLLEAFAESGSLLTIATTHHGEL 535 (798)
Q Consensus 461 g~~~si~~~lstfs~~~~ri~~il~~a~~psLLLLDEP~s--GlDp~eg---~al~~all~~L~~~g~t~VIitTHd~el 535 (798)
++.+.....+..+|+++.+. +..++.+|++|+||||++ ++|+... ..+...+.....+.|+| ||++||+...
T Consensus 107 ~l~~~~~~~~~~ls~g~~~~--i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~t-vi~i~H~~~~ 183 (279)
T 1nlf_A 107 LIQPLIGSLPNIMAPEWFDG--LKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS-IVFLHHASKG 183 (279)
T ss_dssp EECCCTTSCCCTTSHHHHHH--HHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE-EEEEEEC---
T ss_pred EEeecCCCCcccCCHHHHHH--HHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCE-EEEEecCCCc
Confidence 11111112233455554333 334456899999999999 9997433 44444333333466898 9999998765
Q ss_pred H
Q 003747 536 K 536 (798)
Q Consensus 536 ~ 536 (798)
.
T Consensus 184 ~ 184 (279)
T 1nlf_A 184 A 184 (279)
T ss_dssp -
T ss_pred c
Confidence 3
No 87
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.10 E-value=3e-11 Score=127.37 Aligned_cols=124 Identities=17% Similarity=0.219 Sum_probs=71.7
Q ss_pred eeeeEEECCCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhH----Hh--hhcCchhhHhhhhhh
Q 003747 399 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDS----VF--ADIGDEQSLSQSLST 472 (798)
Q Consensus 399 V~~disL~~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~----i~--~~ig~~~si~~~lst 472 (798)
++.++++ ..|++++|+|||||||||||++|.+.......|........ +.+..+ ++ ..+|.. ...
T Consensus 16 vl~~i~i-~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~--i~~~~~~~~~~v~q~~~gl~------~~~ 86 (261)
T 2eyu_A 16 KVLELCH-RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP--IEYVFKHKKSIVNQREVGED------TKS 86 (261)
T ss_dssp HHHHGGG-CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS--CCSCCCCSSSEEEEEEBTTT------BSC
T ss_pred HHHHHhh-CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc--ceeecCCcceeeeHHHhCCC------HHH
Confidence 3344443 46789999999999999999999765433213432221011 111000 00 011111 122
Q ss_pred hhHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccce
Q 003747 473 FSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 545 (798)
Q Consensus 473 fs~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l 545 (798)
| +.....++..+|++||+|||+ |+.... .+++. ...|.+ |++|||+.+...++++...+
T Consensus 87 l-----~~~la~aL~~~p~illlDEp~---D~~~~~----~~l~~-~~~g~~-vl~t~H~~~~~~~~dri~~l 145 (261)
T 2eyu_A 87 F-----ADALRAALREDPDVIFVGEMR---DLETVE----TALRA-AETGHL-VFGTLHTNTAIDTIHRIVDI 145 (261)
T ss_dssp H-----HHHHHHHHHHCCSEEEESCCC---SHHHHH----HHHHH-HHTTCE-EEEEECCSSHHHHHHHHHHT
T ss_pred H-----HHHHHHHHhhCCCEEEeCCCC---CHHHHH----HHHHH-HccCCE-EEEEeCcchHHHHHHHHhhh
Confidence 3 233333345699999999996 885533 23333 356887 99999998877777766544
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.08 E-value=6.6e-11 Score=136.26 Aligned_cols=136 Identities=10% Similarity=-0.032 Sum_probs=87.5
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---ccccccccccchhhHHhhhcCch--h--------hHhhhhhhh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---HILSSEYAKVPWFDSVFADIGDE--Q--------SLSQSLSTF 473 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---~vpa~~~~~i~~~~~i~~~ig~~--~--------si~~~lstf 473 (798)
..|++++|+||||+|||||++++++.... . |. ++.. +.....++.. ...+|.. + ........+
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-~-G~~vi~~~~-ee~~~~l~~~-~~~~g~~~~~~~~~g~~~~~~~~p~~L 354 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACA-N-KERAILFAY-EESRAQLLRN-AYSWGMDFEEMERQNLLKIVCAYPESA 354 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHT-T-TCCEEEEES-SSCHHHHHHH-HHTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHh-C-CCCEEEEEE-eCCHHHHHHH-HHHcCCCHHHHHhCCCEEEEEeccccC
Confidence 46899999999999999999999765433 2 32 2221 1111111111 1122221 1 111122345
Q ss_pred hHH-HHHHHHHHHhCCCCeEEEEecCCCCCChH-----HHHHHHHHHHHHHHhcCCcEEEEEecch----------hHH-
Q 003747 474 SGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPL-----EGTALGMSLLEAFAESGSLLTIATTHHG----------ELK- 536 (798)
Q Consensus 474 s~~-~~ri~~il~~a~~psLLLLDEP~sGlDp~-----eg~al~~all~~L~~~g~t~VIitTHd~----------el~- 536 (798)
|++ .+++........+|++|||| |++|+|+. .... ...++..+.+.|+| ||++||+. ...
T Consensus 355 S~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~-i~~ll~~l~~~g~t-vilvsh~~~~~~~~~~~~~~l~ 431 (525)
T 1tf7_A 355 GLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQF-VIGVTGYAKQEEIT-GLFTNTSDQFMGAHSITDSHIS 431 (525)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHH-HHHHHHHHHHTTCE-EEEEEECSSSSCCCSSCSSCCT
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHH-HHHHHHHHHhCCCE-EEEEECcccccCcccccCcccc
Confidence 654 45555556668999999999 99999995 4444 45678888888998 99999997 443
Q ss_pred hhhccccceeeeE
Q 003747 537 TLKYSNDFFENAC 549 (798)
Q Consensus 537 ~~a~~~~~l~ng~ 549 (798)
.+||++..+.++.
T Consensus 432 ~~~D~vi~L~~ge 444 (525)
T 1tf7_A 432 TITDTIILLQYVE 444 (525)
T ss_dssp TTCSEEEEEEEEE
T ss_pred eeeeEEEEEEEEE
Confidence 4788888777665
No 89
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.07 E-value=3.4e-12 Score=142.89 Aligned_cols=143 Identities=13% Similarity=0.060 Sum_probs=81.9
Q ss_pred cceeeeEEEC-CCCe--------------------EEEEEecCCCCchhhhhhcchhhhhccccc------------ccc
Q 003747 397 HPVPIDIFIA-RKTR--------------------VLVITGPNTGGKTICLKTVGLAVMMAKSGL------------HIL 443 (798)
Q Consensus 397 ~~V~~disL~-~~g~--------------------iv~ItGPNGsGKTTLLK~Igll~~~aq~G~------------~vp 443 (798)
..+..++++. +.|+ +++|+||||+|||||||+|.++..... |. +++
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~-GsI~~~g~~~t~~~~v~ 114 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEE-GAAKTGVVEVTMERHPY 114 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTST-TSCCCCC----CCCEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccC-ceEEECCeecceeEEec
Confidence 3567778887 6677 999999999999999999976432211 11 111
Q ss_pred cccc-cccch------------hhHHhhhcCchhhHhhhhhhhhHH---HHHHHHHHHhCC----------CCeEEEEec
Q 003747 444 SSEY-AKVPW------------FDSVFADIGDEQSLSQSLSTFSGH---LKQIGNIISQST----------SQSLVLLDE 497 (798)
Q Consensus 444 a~~~-~~i~~------------~~~i~~~ig~~~si~~~lstfs~~---~~ri~~il~~a~----------~psLLLLDE 497 (798)
.... ..+.+ .+.++..++..+. ...+. +|++ .+++..+.+++. +|++++|||
T Consensus 115 q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDE 192 (413)
T 1tq4_A 115 KHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNE 192 (413)
T ss_dssp ECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHH
T ss_pred cccccCCeeehHhhcccchHHHHHHHHHHcCCCcc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCc
Confidence 1000 00111 1222333333221 01111 3433 344443334444 899999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHH-----hcC---CcEEEEEecchh---HHhhhcccc
Q 003747 498 IGAGTNPLEGTALGMSLLEAFA-----ESG---SLLTIATTHHGE---LKTLKYSND 543 (798)
Q Consensus 498 P~sGlDp~eg~al~~all~~L~-----~~g---~t~VIitTHd~e---l~~~a~~~~ 543 (798)
||+|+||.....+.. ++..+. +.| .++++++||+.. +..+++.+.
T Consensus 193 PtsgLD~~~~~~l~~-~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 193 ADGEPQTFDKEKVLQ-DIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HTTCCTTCCHHHHHH-HHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred ccccCCHHHHHHHHH-HHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 999999987777755 444442 332 234889999755 445665553
No 90
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.03 E-value=2.7e-10 Score=122.53 Aligned_cols=119 Identities=19% Similarity=0.187 Sum_probs=67.7
Q ss_pred eEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------------ccccccccccc--
Q 003747 402 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------------HILSSEYAKVP-- 451 (798)
Q Consensus 402 disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------------~vpa~~~~~i~-- 451 (798)
++++. ..|++++|+|||||||||+++.|++.... ..|. +++.......+
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 45555 67899999999999999999999765322 1121 11110000000
Q ss_pred -hhhHH------------hhhcCchhhHhhhhhhhhHHHHHHHHHHHhCCCCe--EEEEecCCCCCChHHHHHHHHHHHH
Q 003747 452 -WFDSV------------FADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQS--LVLLDEIGAGTNPLEGTALGMSLLE 516 (798)
Q Consensus 452 -~~~~i------------~~~ig~~~si~~~lstfs~~~~ri~~il~~a~~ps--LLLLDEP~sGlDp~eg~al~~all~ 516 (798)
.++.+ +...|..+.....+..+| .+++..+.+++.+|+ +|+|| ||+|+|+... ++
T Consensus 171 ~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS--kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~-------~~ 240 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI--ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ-------AR 240 (302)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH--HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH-------HH
T ss_pred HHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH--HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH-------HH
Confidence 11111 111222222222233344 334444445678999 99999 9999999532 13
Q ss_pred HHH-hcCCcEEEEEecc
Q 003747 517 AFA-ESGSLLTIATTHH 532 (798)
Q Consensus 517 ~L~-~~g~t~VIitTHd 532 (798)
.+. ..|.+ +|++||.
T Consensus 241 ~~~~~~g~t-~iiiThl 256 (302)
T 3b9q_A 241 EFNEVVGIT-GLILTKL 256 (302)
T ss_dssp HHHHHTCCC-EEEEECC
T ss_pred HHHHhcCCC-EEEEeCC
Confidence 344 45888 8999994
No 91
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.02 E-value=2.1e-10 Score=126.13 Aligned_cols=122 Identities=15% Similarity=0.059 Sum_probs=69.4
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhh--HHhhhcCchhhHhhhhhhhhHHHHHHHHHH
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD--SVFADIGDEQSLSQSLSTFSGHLKQIGNII 484 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~--~i~~~ig~~~si~~~lstfs~~~~ri~~il 484 (798)
..+.+++|+|||||||||||++|.+.......|..+...+...+.... ..+..... ....-+|.. ....
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~----~~~~~~~~~-----~La~ 191 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREV----HRDTLGFSE-----ALRS 191 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEB----TTTBSCHHH-----HHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeee----ccccCCHHH-----HHHH
Confidence 445689999999999999999986554333223222211111111000 00000000 000112222 3333
Q ss_pred HhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccee
Q 003747 485 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFE 546 (798)
Q Consensus 485 ~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ 546 (798)
++..+|++||+|||+ |+.. +..++ .+...|.+ ||+|||+.+...++++...+.
T Consensus 192 aL~~~PdvillDEp~---d~e~----~~~~~-~~~~~G~~-vl~t~H~~~~~~~~dRli~l~ 244 (356)
T 3jvv_A 192 ALREDPDIILVGEMR---DLET----IRLAL-TAAETGHL-VFGTLHTTSAAKTIDRVVDVF 244 (356)
T ss_dssp HTTSCCSEEEESCCC---SHHH----HHHHH-HHHHTTCE-EEEEESCSSHHHHHHHHHHTS
T ss_pred HhhhCcCEEecCCCC---CHHH----HHHHH-HHHhcCCE-EEEEEccChHHHHHHHHhhhc
Confidence 457899999999995 7632 22223 24566887 999999988888888776653
No 92
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.96 E-value=8.5e-10 Score=121.46 Aligned_cols=118 Identities=20% Similarity=0.197 Sum_probs=68.8
Q ss_pred eEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc---------------------------cccccccc-ccc-
Q 003747 402 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------------HILSSEYA-KVP- 451 (798)
Q Consensus 402 disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---------------------------~vpa~~~~-~i~- 451 (798)
+++++ ..|++++|+|||||||||+++.|++.... ..|. +++. ... ..+
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q-~~~~~~p~ 226 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVA-EGDKAKAA 226 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECC-SSSSCCHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc-cCCEEEEecccccccchhHHHHHHHHhcCeEEEEe-cccccChh
Confidence 34555 67899999999999999999999765322 1121 1111 000 000
Q ss_pred --hhhHH------------hhhcCchhhHhhhhhhhhHHHHHHHHHHHhCCCCe--EEEEecCCCCCChHHHHHHHHHHH
Q 003747 452 --WFDSV------------FADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQS--LVLLDEIGAGTNPLEGTALGMSLL 515 (798)
Q Consensus 452 --~~~~i------------~~~ig~~~si~~~lstfs~~~~ri~~il~~a~~ps--LLLLDEP~sGlDp~eg~al~~all 515 (798)
.++.+ +...|..+.....+..+| .+++....+++.+|+ +|+|| ||+|+|+... .
T Consensus 227 ~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS--kqr~~iaral~~~P~e~lLvLD-pttglD~~~~-------~ 296 (359)
T 2og2_A 227 TVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI--ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ-------A 296 (359)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH--HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHH-------H
T ss_pred hhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH--HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHH-------H
Confidence 11111 111222222222333444 344555556788999 99999 9999999532 1
Q ss_pred HHHH-hcCCcEEEEEecc
Q 003747 516 EAFA-ESGSLLTIATTHH 532 (798)
Q Consensus 516 ~~L~-~~g~t~VIitTHd 532 (798)
+.+. ..|.| +|++||.
T Consensus 297 ~~~~~~~g~t-~iiiThl 313 (359)
T 2og2_A 297 REFNEVVGIT-GLILTKL 313 (359)
T ss_dssp HHHHHHTCCC-EEEEESC
T ss_pred HHHHHhcCCe-EEEEecC
Confidence 2344 45888 8999995
No 93
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.92 E-value=1.3e-10 Score=127.46 Aligned_cols=145 Identities=13% Similarity=0.107 Sum_probs=90.5
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccc-------------------------cc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEY-------------------------AK 449 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~-------------------------~~ 449 (798)
+..+.+++ +. ..|++++|+||||+||||||++|++..... .|.+.-..+. ..
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~-~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~ 135 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD-IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD 135 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS-EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC-EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC
Confidence 34567777 77 788999999999999999999997653221 1211100000 00
Q ss_pred cchhhHH---hhhcCchhh-H---------hhhhhhhhHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHH
Q 003747 450 VPWFDSV---FADIGDEQS-L---------SQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE 516 (798)
Q Consensus 450 i~~~~~i---~~~ig~~~s-i---------~~~lstfs~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~ 516 (798)
.+...++ +..++..+. . ...++.||+.++++..+ +.+|++ ++|+||.....+ ..+++
T Consensus 136 ~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~la---l~~p~~------t~Gldp~~~~~l-~~lle 205 (347)
T 2obl_A 136 RPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLA---SGEPDV------RGGFPPSVFSSL-PKLLE 205 (347)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHH---TTCCCC------BTTBCHHHHHHH-HHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHH---cCCCCc------ccCCCHHHHHHH-HHHHH
Confidence 0000110 111111111 0 13467788888555544 566655 899999665555 45776
Q ss_pred HHHh--cCC-----cEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 517 AFAE--SGS-----LLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 517 ~L~~--~g~-----t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
.+.. .|. | |+++|||++ ..+|+++..+.+|++.++.
T Consensus 206 r~~~~~~GsiT~~~t-Vl~~thdl~-~~i~d~v~~i~dG~Ivl~~ 248 (347)
T 2obl_A 206 RAGPAPKGSITAIYT-VLLESDNVN-DPIGDEVRSILDGHIVLTR 248 (347)
T ss_dssp TCEECSSSEEEEEEE-EECCSSCCC-CHHHHHHHHHCSEEEEBCH
T ss_pred HHhCCCCCCeeeEEE-EEEeCCCCC-ChhhhheEEeeCcEEEEeC
Confidence 6653 355 6 899999988 6789999999999998875
No 94
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.91 E-value=1.6e-09 Score=110.37 Aligned_cols=126 Identities=16% Similarity=0.130 Sum_probs=63.3
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhhc------ccc-ccccccccc-ccchhhHHhhhcCch-hhHhhhhh---hhh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMMA------KSG-LHILSSEYA-KVPWFDSVFADIGDE-QSLSQSLS---TFS 474 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~a------q~G-~~vpa~~~~-~i~~~~~i~~~ig~~-~si~~~ls---tfs 474 (798)
+.|++++|+||||+|||||+++++...... ..+ .++.. +.. ....+......++.. +.+..++. .++
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT-EGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES-SSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC-CCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 367899999999999999999997643221 112 22322 111 111112233334332 11111111 111
Q ss_pred -HHHHH-HHHHHHh--CCCCeEEEEecCCCCCChH-------H-----HHHHHHHHHHHHHhcCCcEEEEEecchh
Q 003747 475 -GHLKQ-IGNIISQ--STSQSLVLLDEIGAGTNPL-------E-----GTALGMSLLEAFAESGSLLTIATTHHGE 534 (798)
Q Consensus 475 -~~~~r-i~~il~~--a~~psLLLLDEP~sGlDp~-------e-----g~al~~all~~L~~~g~t~VIitTHd~e 534 (798)
.+... +..+... ..+|++|++|||++.+|+. . ...+...+.+...+.|++ ||+++|...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~t-vi~~~h~~~ 175 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVA-VVITNQVVA 175 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCE-EEEEC----
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEeeeee
Confidence 11111 1112111 2689999999999999974 1 223333344444456888 999999643
No 95
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.91 E-value=8.2e-11 Score=118.26 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.7
Q ss_pred CeEEEEEecCCCCchhhhhhcchhhh
Q 003747 409 TRVLVITGPNTGGKTICLKTVGLAVM 434 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igll~~ 434 (798)
|++++|+||||+|||||+++|++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 46799999999999999999977654
No 96
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.89 E-value=2.7e-09 Score=102.94 Aligned_cols=87 Identities=14% Similarity=0.172 Sum_probs=56.9
Q ss_pred CCeEEEEEecCCCCchhhhhhcchhhhhcccc---cccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHH
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---LHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 484 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il 484 (798)
.++.++|+||||+|||||+++++..... .| .++++.. +...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~~~~~~~~~~-------------~~~~--------------------- 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE--AGKNAAYIDAAS-------------MPLT--------------------- 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT--TTCCEEEEETTT-------------SCCC---------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEcHHH-------------hhHH---------------------
Confidence 5678999999999999999999754432 13 1222100 0000
Q ss_pred HhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecc
Q 003747 485 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 532 (798)
Q Consensus 485 ~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd 532 (798)
..+.+|++|+||||++ +++..... ...+++.+.+.|.+++|++||.
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~-l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQAL-LFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHH-HHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHhCCCEEEEeCccc-cChHHHHH-HHHHHHHHHHcCCcEEEEECCC
Confidence 1235789999999998 55545444 4557777777776536778884
No 97
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.88 E-value=1.6e-09 Score=118.71 Aligned_cols=126 Identities=13% Similarity=0.099 Sum_probs=68.4
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhh-hccc----c--cccccccccc-cchhhHHhhhcCch-hhHhhhhh---hh-
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVM-MAKS----G--LHILSSEYAK-VPWFDSVFADIGDE-QSLSQSLS---TF- 473 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~-~aq~----G--~~vpa~~~~~-i~~~~~i~~~ig~~-~si~~~ls---tf- 473 (798)
+.|+++.|+||||+|||||++++++... .+.. | .++.. +... ...+..++..++.. +.+..++. .+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~-e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT-ENTFRPERIREIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES-SSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC-CCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCC
Confidence 5789999999999999999999976542 1112 2 33332 2110 01111223333321 12222211 11
Q ss_pred hHHHHH-HHHHHHhC-------CCCeEEEEecCCCCCChHH------------HHHHHHHHHHHHHhcCCcEEEEEecch
Q 003747 474 SGHLKQ-IGNIISQS-------TSQSLVLLDEIGAGTNPLE------------GTALGMSLLEAFAESGSLLTIATTHHG 533 (798)
Q Consensus 474 s~~~~r-i~~il~~a-------~~psLLLLDEP~sGlDp~e------------g~al~~all~~L~~~g~t~VIitTHd~ 533 (798)
+.+..+ +..+...+ .+|++||+|||++++|+.. ...+...+.....+.|++ ||+|+|..
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~t-vii~~h~~ 286 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIA-VFVTNQVQ 286 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCE-EEEEEECC
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcE-EEEEcccc
Confidence 222222 22222222 6899999999999999842 123333233333345887 99999985
Q ss_pred h
Q 003747 534 E 534 (798)
Q Consensus 534 e 534 (798)
.
T Consensus 287 ~ 287 (349)
T 1pzn_A 287 A 287 (349)
T ss_dssp -
T ss_pred c
Confidence 4
No 98
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.87 E-value=2.4e-09 Score=103.59 Aligned_cols=77 Identities=19% Similarity=0.164 Sum_probs=59.1
Q ss_pred hhhhhhhhHHHHHHHHH-------HHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhh
Q 003747 467 SQSLSTFSGHLKQIGNI-------ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 539 (798)
Q Consensus 467 ~~~lstfs~~~~ri~~i-------l~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a 539 (798)
....+++|+++++...+ .+++.+|+++||||||+|||+.....+. .++..+...|.+ ||++||+.++..+|
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~t-iiivsH~~~~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQ-VILVSHDEELKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHH-HHHHHTGGGSSE-EEEEESCGGGGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHH-HHHHHHHccCCE-EEEEEChHHHHHhC
Confidence 34567788877765543 2456899999999999999997766665 466666666787 99999999877788
Q ss_pred ccccce
Q 003747 540 YSNDFF 545 (798)
Q Consensus 540 ~~~~~l 545 (798)
+++..+
T Consensus 130 d~ii~l 135 (148)
T 1f2t_B 130 DHVIRI 135 (148)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 887766
No 99
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.84 E-value=2.5e-10 Score=118.29 Aligned_cols=38 Identities=8% Similarity=0.135 Sum_probs=23.9
Q ss_pred CCcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 395 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 395 ~~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
++..++.+++|+ ..|.+++|+|||||||||++|+|++.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999 88899999999999999999999653
No 100
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.76 E-value=8.1e-10 Score=124.69 Aligned_cols=145 Identities=12% Similarity=0.096 Sum_probs=91.4
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhccccc-----------------------------ccccc
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-----------------------------HILSS 445 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~-----------------------------~vpa~ 445 (798)
+..+.+++ +. ..|++++|+|||||||||||++|+++.... .|. +++..
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~-~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD-VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS-EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC-eEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 34578888 88 888999999999999999999997653211 111 11110
Q ss_pred ccccc---chhh------HHhhhcCc-hhhHhhhhhhhhHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHH
Q 003747 446 EYAKV---PWFD------SVFADIGD-EQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 515 (798)
Q Consensus 446 ~~~~i---~~~~------~i~~~ig~-~~si~~~lstfs~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all 515 (798)
..... ...+ ..+...+. -..+...++.||++++++..+ +.+|++ ++|+||.....+. .++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA---l~~p~~------t~glD~~~~~~l~-~ll 291 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA---IGEPPA------TKGYPPSVFAKLP-ALV 291 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH---TTCCCC------SSSCCTTHHHHHH-HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH---hCCCcc------cccCCHHHHHHHH-HHH
Confidence 00000 0000 01111010 001122356788888666554 677776 9999996666654 466
Q ss_pred HHHHh---c-CC-----cEEEEEecchhHHhhhccccceeeeEEEEec
Q 003747 516 EAFAE---S-GS-----LLTIATTHHGELKTLKYSNDFFENACMEFDE 554 (798)
Q Consensus 516 ~~L~~---~-g~-----t~VIitTHd~el~~~a~~~~~l~ng~v~fd~ 554 (798)
+.+.. . |. | |+++|||++ ..+|+++..+.+|++..+.
T Consensus 292 ~r~~~~~~~~GsiT~~~t-Vlv~tHdl~-~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 292 ERAGNGIHGGGSITAFYT-VLTEGDDQQ-DPIADSARAILDGHIVLSR 337 (438)
T ss_dssp TTCSCCSTTSCEEEEEEE-EECSSSCSC-CHHHHHHHHHSSEEEEECH
T ss_pred HHHHhccCCCCcccceeE-EEEeCCCcc-chhhceEEEEeCcEEEEeC
Confidence 66654 2 53 6 899999998 6789999999999998865
No 101
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.75 E-value=2e-11 Score=122.71 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.7
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
..+.+++|+||||||||||+|+|++.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999764
No 102
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.73 E-value=6.1e-10 Score=113.73 Aligned_cols=35 Identities=23% Similarity=0.133 Sum_probs=23.9
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhh
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
-+.+++|+ ..|++++|+||||||||||+|+|+++.
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46788888 788999999999999999999997654
No 103
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.71 E-value=4.7e-10 Score=121.23 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=24.2
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
..|.+++|+||||||||||+|+|+++.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 568999999999999999999997654
No 104
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.70 E-value=2.4e-09 Score=113.39 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=21.0
Q ss_pred EEEEEecCCCCchhhhhhcchhhhh
Q 003747 411 VLVITGPNTGGKTICLKTVGLAVMM 435 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igll~~~ 435 (798)
.++|+||||+|||||||+|++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3889999999999999999776543
No 105
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.69 E-value=1.5e-10 Score=124.79 Aligned_cols=129 Identities=11% Similarity=-0.013 Sum_probs=78.7
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccc--------cccchh-------hHHhhhcC
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEY--------AKVPWF-------DSVFADIG 461 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~--------~~i~~~-------~~i~~~ig 461 (798)
.++.+++++ +.|++++|+||||||||||+++|.++. -...-.++|.... ..+.+. ...+..+
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~~~~~~~i~~~- 191 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTY- 191 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGGTTSGGGGGGGTTCSCEEEEEECHHHHHHHHHT-
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEecCccccccccHHHHhhccCccccHHHHHHHHHH-
Confidence 478888998 889999999999999999999997654 1111112221000 011110 0011110
Q ss_pred chhhHhhhhhhhhHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcc
Q 003747 462 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 541 (798)
Q Consensus 462 ~~~si~~~lstfs~~~~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~ 541 (798)
..+.+. -..+|+++++. +.+++.+|+||| |++||+.....+. . .||+.....++++
T Consensus 192 L~~gld--g~~LSgGqkQR--ARAll~~p~iLl----Ts~LD~~~~~~i~------------~----ltH~~~~~~~aD~ 247 (305)
T 2v9p_A 192 LRNALD--GYPVSIDRKHK--AAVQIKAPPLLV----TSNIDVQAEDRYL------------Y----LHSRVQTFRFEQP 247 (305)
T ss_dssp TTGGGG--TCCEECCCSSC--CCCEECCCCEEE----EESSCSTTCGGGG------------G----GTTTEEEEECCCC
T ss_pred hHccCC--ccCcCHHHHHH--HHHHhCCCCEEE----ECCCCHHHHHHHH------------H----HhCCHHHHHhCCE
Confidence 001111 24577766655 666789999999 9999995544442 1 1788877788999
Q ss_pred ccceeeeEEEEe
Q 003747 542 NDFFENACMEFD 553 (798)
Q Consensus 542 ~~~l~ng~v~fd 553 (798)
+ .+.+|.+...
T Consensus 248 i-vl~~G~iv~~ 258 (305)
T 2v9p_A 248 C-TDESGEQPFN 258 (305)
T ss_dssp C-CCC---CCCC
T ss_pred E-EEeCCEEEEe
Confidence 9 9999988653
No 106
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.68 E-value=1.5e-08 Score=112.04 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=66.5
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccc------cchhhHHhhhcCchhhHhhhhhhhhHHHHHH
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAK------VPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 480 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~------i~~~~~i~~~ig~~~si~~~lstfs~~~~ri 480 (798)
..|.+++|+|||||||||||++|.+.......|..+....... +.++.+. .+|. ....|+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~--~~g~------~~~~~~~----- 200 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR--EVGE------DTKSFAD----- 200 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE--EBTT------TBSCSHH-----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee--ecCC------CHHHHHH-----
Confidence 4678899999999999999999976543321343221111111 1111110 0111 1123432
Q ss_pred HHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccc
Q 003747 481 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 544 (798)
Q Consensus 481 ~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~ 544 (798)
....++..+|++||+|||+ |+.... .+++. ...|.+ |++|+|+.+...++++...
T Consensus 201 ~l~~~L~~~pd~illdE~~---d~e~~~----~~l~~-~~~g~~-vi~t~H~~~~~~~~~rl~~ 255 (372)
T 2ewv_A 201 ALRAALREDPDVIFVGEMR---DLETVE----TALRA-AETGHL-VFGTLHTNTAIDTIHRIVD 255 (372)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHH----HHHHH-HTTTCE-EEECCCCCSHHHHHHHHHH
T ss_pred HHHHHhhhCcCEEEECCCC---CHHHHH----HHHHH-HhcCCE-EEEEECcchHHHHHHHHHH
Confidence 2222345699999999995 774422 23333 356787 8999999876666666543
No 107
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.66 E-value=2.6e-08 Score=121.29 Aligned_cols=97 Identities=24% Similarity=0.255 Sum_probs=76.3
Q ss_pred HhhhcCchh-hHhhhhhhhhHHHHH-HHHHHHhCCCCe--EEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEec
Q 003747 456 VFADIGDEQ-SLSQSLSTFSGHLKQ-IGNIISQSTSQS--LVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 531 (798)
Q Consensus 456 i~~~ig~~~-si~~~lstfs~~~~r-i~~il~~a~~ps--LLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTH 531 (798)
.+..+|... ......+++|+++++ +..+.+++.+|+ +|||||||+||||.+...+.. +++.|.+.|.| ||++||
T Consensus 447 ~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~-~L~~L~~~G~T-vivVtH 524 (916)
T 3pih_A 447 FLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIK-TLKKLRDLGNT-VIVVEH 524 (916)
T ss_dssp HHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHH-HHHHTTTTTCE-EEEECC
T ss_pred HHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHH-HHHHHHhcCCE-EEEEeC
Confidence 455677654 356778889976654 444445566665 999999999999988888865 77778888998 999999
Q ss_pred chhHHhhhccccce------eeeEEEEec
Q 003747 532 HGELKTLKYSNDFF------ENACMEFDE 554 (798)
Q Consensus 532 d~el~~~a~~~~~l------~ng~v~fd~ 554 (798)
|+++...|++++.+ .+|.+.+++
T Consensus 525 d~~~~~~aD~ii~lgpgag~~~G~iv~~G 553 (916)
T 3pih_A 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQG 553 (916)
T ss_dssp CHHHHHTCSEEEEEESSSGGGCSEEEEEE
T ss_pred CHHHHHhCCEEEEEcCCcccCCCEEEEee
Confidence 99998889999988 788887753
No 108
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.64 E-value=1.8e-09 Score=126.66 Aligned_cols=49 Identities=10% Similarity=0.167 Sum_probs=34.1
Q ss_pred CCCCeEEEEecC------CCCCChHHHHHHHHHHHHHH-HhcCCcEEEEEecchhHH
Q 003747 487 STSQSLVLLDEI------GAGTNPLEGTALGMSLLEAF-AESGSLLTIATTHHGELK 536 (798)
Q Consensus 487 a~~psLLLLDEP------~sGlDp~eg~al~~all~~L-~~~g~t~VIitTHd~el~ 536 (798)
...|+|+|+||| |+|+|+.....+.. ++..+ .+..+.+++++||+.++.
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~-li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKT-LIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHHH-HHHHHTTSSSCCEEEEEESSSCTT
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHHH-HHHHHHhcCCCCceEEEeccchhc
Confidence 356999999999 99999966666654 55554 444344488999987643
No 109
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.62 E-value=1.2e-08 Score=104.60 Aligned_cols=27 Identities=11% Similarity=0.308 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
+.|++++|+||||||||||+|+|.+..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 578999999999999999999997654
No 110
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.60 E-value=5.3e-08 Score=118.29 Aligned_cols=96 Identities=20% Similarity=0.163 Sum_probs=75.6
Q ss_pred hhhcCchh-hHhhhhhhhhHHHHH-HHHHHHhCCC--CeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecc
Q 003747 457 FADIGDEQ-SLSQSLSTFSGHLKQ-IGNIISQSTS--QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 532 (798)
Q Consensus 457 ~~~ig~~~-si~~~lstfs~~~~r-i~~il~~a~~--psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd 532 (798)
+..+|+.. .+.....++|+++++ +..+..++.+ |.++||||||+||||.+...+.. +++.|.+.|.| ||+++||
T Consensus 488 L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~-~L~~Lr~~G~T-VIvVeHd 565 (972)
T 2r6f_A 488 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIA-TLKSMRDLGNT-LIVVEHD 565 (972)
T ss_dssp HHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHHHTTTCE-EEEECCC
T ss_pred hhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHH-HHHHHHhCCCE-EEEEecC
Confidence 45666653 356777889976655 4444455665 58999999999999988888864 77888888998 9999999
Q ss_pred hhHHhhhccccce------eeeEEEEec
Q 003747 533 GELKTLKYSNDFF------ENACMEFDE 554 (798)
Q Consensus 533 ~el~~~a~~~~~l------~ng~v~fd~ 554 (798)
.++...||++..+ .+|.+.+++
T Consensus 566 l~~i~~ADrIi~LgpgaG~~gG~iv~~G 593 (972)
T 2r6f_A 566 EDTMLAADYLIDIGPGAGIHGGEVVAAG 593 (972)
T ss_dssp HHHHHSCSEEEEECSSSGGGCCSEEEEE
T ss_pred HHHHHhCCEEEEeCCCccCCCCEEEEec
Confidence 9988889998888 678888754
No 111
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.58 E-value=6.1e-08 Score=118.12 Aligned_cols=96 Identities=22% Similarity=0.175 Sum_probs=74.3
Q ss_pred hhhcCchh-hHhhhhhhhhHHHHH-HHHHHHhCCC--CeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecc
Q 003747 457 FADIGDEQ-SLSQSLSTFSGHLKQ-IGNIISQSTS--QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 532 (798)
Q Consensus 457 ~~~ig~~~-si~~~lstfs~~~~r-i~~il~~a~~--psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd 532 (798)
+..+|+.. .+.....++|+++++ +..+.+++.+ |.++||||||+||||.+...+.. +++.|.+.|.| ||+++||
T Consensus 505 L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~-~L~~Lr~~G~T-VIvVeHd 582 (993)
T 2ygr_A 505 LLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIE-TLTRLRDLGNT-LIVVEHD 582 (993)
T ss_dssp HHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCE-EEEECCC
T ss_pred HhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHH-HHHHHHHcCCE-EEEECCC
Confidence 45566653 356677888976654 4444455666 58999999999999988888764 77788889998 9999999
Q ss_pred hhHHhhhccccce------eeeEEEEec
Q 003747 533 GELKTLKYSNDFF------ENACMEFDE 554 (798)
Q Consensus 533 ~el~~~a~~~~~l------~ng~v~fd~ 554 (798)
.++...||++..+ .+|.+.+++
T Consensus 583 l~~i~~ADrIi~Lgp~aG~~gG~iv~~G 610 (993)
T 2ygr_A 583 EDTIEHADWIVDIGPGAGEHGGRIVHSG 610 (993)
T ss_dssp HHHHHTCSEEEEECSSSGGGCCSCCEEE
T ss_pred HHHHHhCCEEEEecCccccCCCEEEEee
Confidence 9988889988888 577776643
No 112
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.58 E-value=8.2e-08 Score=115.98 Aligned_cols=95 Identities=18% Similarity=0.140 Sum_probs=75.9
Q ss_pred hhhcCchh-hHhhhhhhhhHHHH-HHHHHHHhCCCC--eEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecc
Q 003747 457 FADIGDEQ-SLSQSLSTFSGHLK-QIGNIISQSTSQ--SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 532 (798)
Q Consensus 457 ~~~ig~~~-si~~~lstfs~~~~-ri~~il~~a~~p--sLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd 532 (798)
+..+|... .+.+...++|++++ ++..+..++.+| .++||||||+||||.+...+.. +++.|.+.|.| ||+++|+
T Consensus 363 L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~-~l~~L~~~G~T-VIvVeHd 440 (842)
T 2vf7_A 363 LLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLS-ALENLKRGGNS-LFVVEHD 440 (842)
T ss_dssp HHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHHHTTTCE-EEEECCC
T ss_pred HHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHH-HHHHHHHcCCE-EEEEcCC
Confidence 55677754 36777888997665 455555667777 5999999999999988888864 77888988998 9999999
Q ss_pred hhHHhhhccccce------eeeEEEEe
Q 003747 533 GELKTLKYSNDFF------ENACMEFD 553 (798)
Q Consensus 533 ~el~~~a~~~~~l------~ng~v~fd 553 (798)
+++...||++..+ .+|.+.+.
T Consensus 441 l~~l~~aD~ii~lgpgaG~~~G~iv~~ 467 (842)
T 2vf7_A 441 LDVIRRADWLVDVGPEAGEKGGEILYS 467 (842)
T ss_dssp HHHHTTCSEEEEECSSSGGGCCSEEEE
T ss_pred HHHHHhCCEEEEeCCCcccCCCEEEEe
Confidence 9988889988888 67888775
No 113
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.54 E-value=2.3e-08 Score=109.76 Aligned_cols=56 Identities=7% Similarity=-0.072 Sum_probs=37.1
Q ss_pred CCCCeEEEEec---CC------CCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccc
Q 003747 487 STSQSLVLLDE---IG------AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 543 (798)
Q Consensus 487 a~~psLLLLDE---P~------sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~ 543 (798)
..+|+++|||| |+ .++|+.....++..+.+.+.+.+.+ +|+++|......+++...
T Consensus 275 ~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~-ililde~~~~~r~~~~i~ 339 (365)
T 1lw7_A 275 EYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVP-YIEIESPSYLDRYNQVKA 339 (365)
T ss_dssp HSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCC-CEEEECSSHHHHHHHHHH
T ss_pred hcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCC-EEEeCCCCHHHHHHHHHH
Confidence 35899999999 65 5789988888877666555566787 788888655555555443
No 114
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.54 E-value=1.1e-07 Score=106.04 Aligned_cols=125 Identities=14% Similarity=0.158 Sum_probs=63.6
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhh-cccc------cccccccccccchhhHHhhhcCch-hhHhhhhh---hhhH
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMM-AKSG------LHILSSEYAKVPWFDSVFADIGDE-QSLSQSLS---TFSG 475 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~-aq~G------~~vpa~~~~~i~~~~~i~~~ig~~-~si~~~ls---tfs~ 475 (798)
..|++++|+||||+|||||+++++..... ...| .|+.............+...+|.. +.+..++. .+..
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCCh
Confidence 46899999999999999999977533222 1111 222221111111122233444432 22211111 1111
Q ss_pred -H-HHHHHHHHH--hCCCCeEEEEecCCCCCChHHH------------HHHHHHHHHHHHhcCCcEEEEEecc
Q 003747 476 -H-LKQIGNIIS--QSTSQSLVLLDEIGAGTNPLEG------------TALGMSLLEAFAESGSLLTIATTHH 532 (798)
Q Consensus 476 -~-~~ri~~il~--~a~~psLLLLDEP~sGlDp~eg------------~al~~all~~L~~~g~t~VIitTHd 532 (798)
+ +..+..+.. ...+|++|++|||++.+|+... ..+...+.+...+.|++ ||+|+|.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~git-VIlv~Hv 327 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVA-VVVTNQV 327 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCE-EEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCE-EEEEEee
Confidence 1 111111111 1358999999999999986322 23333333333456888 9999998
No 115
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.49 E-value=1.5e-07 Score=101.25 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
..+++++|+|||||||||+++.|+++.
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 357899999999999999999997654
No 116
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.45 E-value=6.5e-07 Score=91.00 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=35.3
Q ss_pred CCCeEEEEecCCCCC--ChHHHHHHHHHHHHHHHhcCCcEEEEEecchh
Q 003747 488 TSQSLVLLDEIGAGT--NPLEGTALGMSLLEAFAESGSLLTIATTHHGE 534 (798)
Q Consensus 488 ~~psLLLLDEP~sGl--Dp~eg~al~~all~~L~~~g~t~VIitTHd~e 534 (798)
.+|+++++|+|+... |+.........+.+.+.+.|++ ||+++|...
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~-vi~~~h~~~ 174 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCT-SIFVSQVSV 174 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCE-EEEEEECC-
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCe-EEEEecCCC
Confidence 478999999999887 5545556666677777778888 899999754
No 117
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.38 E-value=2e-07 Score=99.96 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=20.0
Q ss_pred CcceeeeEEECCCCeEEEEEecCCCCchhhhhhcchh
Q 003747 396 AHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 396 ~~~V~~disL~~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
++.+..++++. ++|+||||+||||||++|.+.
T Consensus 10 ~~~~l~~~~~~-----I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 10 RKSVKKGFEFT-----LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp --------CEE-----EEEEEETTSSHHHHHHHHHC-
T ss_pred CEEEEcCCCEE-----EEEECCCCCCHHHHHHHHhCC
Confidence 34567777663 599999999999999997554
No 118
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.37 E-value=4.8e-07 Score=103.88 Aligned_cols=116 Identities=22% Similarity=0.257 Sum_probs=77.8
Q ss_pred hhhh-hH-HHHHHHHHHHhCCCC--eEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccce
Q 003747 470 LSTF-SG-HLKQIGNIISQSTSQ--SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 545 (798)
Q Consensus 470 lstf-s~-~~~ri~~il~~a~~p--sLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l 545 (798)
++.+ |+ +.+++..+..++.+| ++|||||||+|+|+.....+.. ++..+.+ |.+ ||++||++++..+|+++..+
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~-~l~~~~~-~~~-vi~itH~~~~~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAE-QLSRLAD-TRQ-VLVVTHLAQIAARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHH-HHHHHHH-HSE-EEEECCCHHHHHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHH-HHHHHhC-CCE-EEEEecCHHHHHhCCEEEEE
Confidence 3444 64 455666666677888 9999999999999977777654 6666766 787 99999999999889888887
Q ss_pred eeeEEEEecccceeeEEeecCCCCCchHHHHHHHcC--CChHHHHHHHHHH
Q 003747 546 ENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG--LPGIVVQNARQLY 594 (798)
Q Consensus 546 ~ng~v~fd~~~l~ptY~L~~G~~g~S~a~~iA~~~g--l~~~ii~~A~~~~ 594 (798)
.++.. ++.+... .. .......-.+|++.++ ..+..+..|++++
T Consensus 471 ~~~~~--~~~~~~~-~~---~l~~~~~~~ei~~~~~g~~~~~~~~~a~~ll 515 (517)
T 4ad8_A 471 EKQVE--DGRTVSH-VR---LLTGDERLEEIARMLSGNTSEAALEHARELL 515 (517)
T ss_dssp ECCEE--TTEECCE-EE---ECCSHHHHHHHHHHSSSSCCHHHHHHHHHHH
T ss_pred ecccc--CCceeee-ee---eCCcchHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 65532 1111111 11 1122223457777774 4566777777765
No 119
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=4e-07 Score=98.20 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=29.1
Q ss_pred CCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchh
Q 003747 487 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 534 (798)
Q Consensus 487 a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~e 534 (798)
..+|.++|||||++ +|+....++.. +++.. ..+++ +|++||+.+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~-~le~~-~~~~~-~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRR-TMEKY-SKNIR-LIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHH-HHHHS-TTTEE-EEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHH-HHHhh-cCCCE-EEEEeCCHH
Confidence 45899999999999 99855444433 33332 23455 899999854
No 120
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.33 E-value=8.5e-08 Score=107.59 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=25.9
Q ss_pred cceeeeEEECCCCeEEEEEecCCCCchhhhhhcchhhh
Q 003747 397 HPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVM 434 (798)
Q Consensus 397 ~~V~~disL~~~g~iv~ItGPNGsGKTTLLK~Igll~~ 434 (798)
..+..+++|. ++|+||||+|||||+++|++...
T Consensus 24 ~~vl~~vsf~-----I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 24 KSVKRGFEFT-----LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp TTCC-CCCEE-----EEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEecCCCEE-----EEEECCCCCcHHHHHHHHhCCCC
Confidence 4567777764 59999999999999999976543
No 121
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.31 E-value=5.5e-07 Score=96.46 Aligned_cols=134 Identities=14% Similarity=0.161 Sum_probs=71.1
Q ss_pred CCCCeEEEEEecCCCCchhhhhhcchhhhhcccc---cccccccccccchhhHHh---hhcCchhhHhhhhhhhhHHHHH
Q 003747 406 ARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---LHILSSEYAKVPWFDSVF---ADIGDEQSLSQSLSTFSGHLKQ 479 (798)
Q Consensus 406 ~~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G---~~vpa~~~~~i~~~~~i~---~~ig~~~si~~~lstfs~~~~r 479 (798)
...+++++|+||||+||||+++.|+...... .| .++.+ +.......+++- ..+|..-.. ..+. ..
T Consensus 102 ~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~-~G~~V~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~-----~~~~--~~ 172 (296)
T 2px0_A 102 PIHSKYIVLFGSTGAGKTTTLAKLAAISMLE-KHKKIAFITT-DTYRIAAVEQLKTYAELLQAPLEV-----CYTK--EE 172 (296)
T ss_dssp CCCSSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCCEEEEEC-CCSSTTHHHHHHHHHTTTTCCCCB-----CSSH--HH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCEEEEEec-CcccchHHHHHHHHHHhcCCCeEe-----cCCH--HH
Confidence 3457899999999999999999997554321 23 23333 222222222221 112211000 0111 11
Q ss_pred HHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHH---hcCCcEEEE-Eecch-hHHhhhccccceeeeEEEE
Q 003747 480 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA---ESGSLLTIA-TTHHG-ELKTLKYSNDFFENACMEF 552 (798)
Q Consensus 480 i~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~---~~g~t~VIi-tTHd~-el~~~a~~~~~l~ng~v~f 552 (798)
+...+..+.+++++|+| |+|+|+.....+ ..+...+. ..+.. +++ +||.. ++...++....+..+.+.+
T Consensus 173 l~~al~~~~~~dlvIiD--T~G~~~~~~~~~-~el~~~l~~~~~~~~~-lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 173 FQQAKELFSEYDHVFVD--TAGRNFKDPQYI-DELKETIPFESSIQSF-LVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp HHHHHHHGGGSSEEEEE--CCCCCTTSHHHH-HHHHHHSCCCTTEEEE-EEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred HHHHHHHhcCCCEEEEe--CCCCChhhHHHH-HHHHHHHhhcCCCeEE-EEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 23333345889999999 889998554333 33443332 22333 444 58874 4555666555555566655
No 122
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.25 E-value=1.4e-06 Score=86.31 Aligned_cols=73 Identities=16% Similarity=0.086 Sum_probs=52.2
Q ss_pred hhhhhHHHHHHHHHH-Hh----CCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccc
Q 003747 470 LSTFSGHLKQIGNII-SQ----STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 544 (798)
Q Consensus 470 lstfs~~~~ri~~il-~~----a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~ 544 (798)
++.+|+++++...+. .+ ..+|+++|||||++|||+.....+.. ++..+.. +.+ +|++||+..+..+|++++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~-~l~~~~~-~~~-~ivith~~~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVAD-LIKESSK-ESQ-FIVITLRDVMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HHHHHTT-TSE-EEEECSCHHHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHH-HHHHhcc-CCE-EEEEEecHHHHHhCCEEEE
Confidence 455777666544433 33 25679999999999999977777655 5555543 455 7889999888888888765
Q ss_pred e
Q 003747 545 F 545 (798)
Q Consensus 545 l 545 (798)
+
T Consensus 139 v 139 (173)
T 3kta_B 139 V 139 (173)
T ss_dssp E
T ss_pred E
Confidence 5
No 123
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.22 E-value=2.7e-07 Score=103.58 Aligned_cols=46 Identities=7% Similarity=0.067 Sum_probs=36.7
Q ss_pred hCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecc
Q 003747 486 QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 532 (798)
Q Consensus 486 ~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd 532 (798)
+..+.++|++|+|+..+.+.+...+...+.+.|...|.. |+.++.+
T Consensus 173 L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~-I~~is~~ 218 (427)
T 2qag_B 173 LDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQ-IYQFPTD 218 (427)
T ss_dssp TCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCC-CCCCC--
T ss_pred HhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCc-EEecCCC
Confidence 346889999999999999988888877777678888988 7777764
No 124
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.19 E-value=4.6e-06 Score=91.36 Aligned_cols=121 Identities=21% Similarity=0.253 Sum_probs=62.9
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhhc-ccccccccccccccchhhHHhhhcCch-hhHhh-hhhhhhHHHHHHHHH
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMMA-KSGLHILSSEYAKVPWFDSVFADIGDE-QSLSQ-SLSTFSGHLKQIGNI 483 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~a-q~G~~vpa~~~~~i~~~~~i~~~ig~~-~si~~-~lstfs~~~~ri~~i 483 (798)
+.|+++.|.||||+|||||+..++...... ....|+.. +...-. .....+|.. +++.- ...+ ..+...+...
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~-E~~~~~---~~a~~lG~~~~~l~i~~~~~-~e~~l~~~~~ 133 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA-EHALDP---EYAKKLGVDTDSLLVSQPDT-GEQALEIADM 133 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES-SCCCCH---HHHHHTTCCGGGCEEECCSS-HHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC-CCCcCH---HHHHHcCCCHHHeEEecCCC-HHHHHHHHHH
Confidence 367899999999999999988875433221 11233333 211111 112233321 11100 0001 1122223333
Q ss_pred HHhCCCCeEEEEecCCCCCC----------h---HHH---HHHHHHHHHHHHhcCCcEEEEEecch
Q 003747 484 ISQSTSQSLVLLDEIGAGTN----------P---LEG---TALGMSLLEAFAESGSLLTIATTHHG 533 (798)
Q Consensus 484 l~~a~~psLLLLDEP~sGlD----------p---~eg---~al~~all~~L~~~g~t~VIitTHd~ 533 (798)
+....+|++|++|+|++.+. + ... ......+...+.+.+++ ||+++|..
T Consensus 134 l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~t-VI~inh~~ 198 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTT-AIFINELR 198 (349)
T ss_dssp HHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCE-EEEEEECC
T ss_pred HHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCE-EEEEeccc
Confidence 33345799999999999883 2 111 12223333334677888 89999964
No 125
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.13 E-value=3.4e-07 Score=100.60 Aligned_cols=132 Identities=13% Similarity=0.063 Sum_probs=66.7
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCch--hhHhhhhhhhhH
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDE--QSLSQSLSTFSG 475 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~--~si~~~lstfs~ 475 (798)
++.++++. ..|++++|+|||||||||||++|.+..-. ..|...-. ....+... .....++.. +....+. + .
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie-~~~e~~~~-~~~~~v~~v~~q~~~~~~--~-~ 237 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIE-DVPELFLP-DHPNHVHLFYPSEAKEEE--N-A 237 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEE-SSSCCCCT-TCSSEEEEECC------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEEC-CccccCcc-ccCCEEEEeecCcccccc--c-c
Confidence 34777777 77889999999999999999999654322 22322111 00111000 000000000 0000000 0 1
Q ss_pred HH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccce
Q 003747 476 HL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 545 (798)
Q Consensus 476 ~~-~ri~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l 545 (798)
.. .+-.....+...|+.+++||+.. . .. ..+++.+.....+ ++.++|.......+++...+
T Consensus 238 ~~t~~~~i~~~l~~~pd~~l~~e~r~---~----~~-~~~l~~l~~g~~~-~l~t~H~~~~~~~~~Rl~~l 299 (361)
T 2gza_A 238 PVTAATLLRSCLRMKPTRILLAELRG---G----EA-YDFINVAASGHGG-SITSCHAGSCELTFERLALM 299 (361)
T ss_dssp -CCHHHHHHHHTTSCCSEEEESCCCS---T----HH-HHHHHHHHTTCCS-CEEEEECSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHhcCCCEEEEcCchH---H----HH-HHHHHHHhcCCCe-EEEEECCCCHHHHHHHHHHH
Confidence 11 11111123356899999999953 2 22 2345555544445 79999987765555555443
No 126
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.09 E-value=2.8e-06 Score=92.37 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=24.1
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
..|++++|+|||||||||+++.|++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999997653
No 127
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.05 E-value=3.1e-07 Score=89.53 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=32.1
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
..+.++++|+ ..|++++|+||||||||||+|+|+++.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4567778888 889999999999999999999997655
No 128
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.98 E-value=9.2e-07 Score=91.21 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=21.1
Q ss_pred CCeEEEEEecCCCCchhhhhhcc
Q 003747 408 KTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.+.+++|+|||||||||++|+|+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999997
No 129
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.95 E-value=6.9e-06 Score=91.96 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=54.3
Q ss_pred hhhhhHHHHHHH-HHHHhC----CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccc
Q 003747 470 LSTFSGHLKQIG-NIISQS----TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 544 (798)
Q Consensus 470 lstfs~~~~ri~-~il~~a----~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~ 544 (798)
.+.+|+++++.. .++.++ .+|+++|||||+++||+.....+.. ++..+...+.+ +|+|||+..+...|++++.
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~~~~-~ii~th~~~~~~~~d~~~~ 408 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAA-YIRRHRNPDLQ-FIVISLKNTMFEKSDALVG 408 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHH-HHHHHCBTTBE-EEEECSCHHHHTTCSEEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHH-HHHHHhcCCCE-EEEEECCHHHHHhCCEEEE
Confidence 456777665544 444444 6899999999999999977766654 55555444666 8999999888778887766
Q ss_pred ee
Q 003747 545 FE 546 (798)
Q Consensus 545 l~ 546 (798)
+.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 130
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.94 E-value=1.2e-05 Score=91.74 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=28.8
Q ss_pred eeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhh
Q 003747 400 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 400 ~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
..+++|. ..|++++|+||||||||||+++|+++.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3566676 678999999999999999999997654
No 131
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.92 E-value=1.2e-05 Score=88.51 Aligned_cols=58 Identities=19% Similarity=0.107 Sum_probs=43.8
Q ss_pred hCCC-CeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccee
Q 003747 486 QSTS-QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFE 546 (798)
Q Consensus 486 ~a~~-psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~~~~l~ 546 (798)
++.+ |++||||||++|+|+.....+.. ++..+. .+.+ ||+|||+.++..+|+++..+.
T Consensus 301 l~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~-~~~~-vi~~th~~~~~~~~d~~~~l~ 359 (371)
T 3auy_A 301 LIGNRVECIILDEPTVYLDENRRAKLAE-IFRKVK-SIPQ-MIIITHHRELEDVADVIINVK 359 (371)
T ss_dssp HHSSCCSEEEEESTTTTCCHHHHHHHHH-HHHHCC-SCSE-EEEEESCGGGGGGCSEEEEEE
T ss_pred HhcCCCCeEEEeCCCCcCCHHHHHHHHH-HHHHhc-cCCe-EEEEEChHHHHhhCCEEEEEE
Confidence 3577 99999999999999977666654 444443 3456 899999988777887766654
No 132
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.81 E-value=2.9e-05 Score=84.01 Aligned_cols=122 Identities=11% Similarity=0.026 Sum_probs=62.7
Q ss_pred EEEEEecCCCCchhhhhhcchhhhhc-cc-ccccccccc-cccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHHHhC
Q 003747 411 VLVITGPNTGGKTICLKTVGLAVMMA-KS-GLHILSSEY-AKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQS 487 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igll~~~a-q~-G~~vpa~~~-~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il~~a 487 (798)
.++|+||+|+||||+++.++...... .. -.++.+... ....++..++..++.... .... ....-...+...+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~-~~~~-~~~~~~~~l~~~l~~~ 123 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP-RRGL-SRDEFLALLVEHLRER 123 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC-SSCC-CHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC-CCCC-CHHHHHHHHHHHHhhc
Confidence 79999999999999999986433211 00 112222111 111233344444432100 0000 0111122333444445
Q ss_pred CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHh---cCCcEEEEEecchhHHh
Q 003747 488 TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE---SGSLLTIATTHHGELKT 537 (798)
Q Consensus 488 ~~psLLLLDEP~sGlDp~eg~al~~all~~L~~---~g~t~VIitTHd~el~~ 537 (798)
..|.+|+|||+... |+.....+. .+++.+.. .+.+ +|++||+.++..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~-~~~~~~~~~~~~~~~-iI~~~~~~~~~~ 173 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFI-RLGQEADKLGAFRIA-LVIVGHNDAVLN 173 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHH-HHTTCHHHHSSCCEE-EEEEESSTHHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHH-HHHHhCCCCCcCCEE-EEEEECCchHHH
Confidence 67899999999775 663333332 23333333 4555 888999876543
No 133
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.80 E-value=1e-05 Score=90.61 Aligned_cols=123 Identities=18% Similarity=0.132 Sum_probs=68.5
Q ss_pred eeEEEC-CCCeEEEEEecCCCCchhhhhhcchhh----------hhcccccccccccccccc----------------hh
Q 003747 401 IDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV----------MMAKSGLHILSSEYAKVP----------------WF 453 (798)
Q Consensus 401 ~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~----------~~aq~G~~vpa~~~~~i~----------------~~ 453 (798)
.+++++ ..+..++|+||||+||||||++|.... +.+..|.. +......+. +.
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V-~~~~~~~~~l~DtpGli~~a~~~~~L~ 226 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV-EVSEEERFTLADIPGIIEGASEGKGLG 226 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEE-ECSSSCEEEEEECCCCCCCGGGSCCSC
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEE-EecCcceEEEEeccccccchhhhhhhh
Confidence 566666 667789999999999999999996542 11111111 000000000 00
Q ss_pred hHHhh----------hcCchhhHhhhhhhhhHHHHHHHHHH-HhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcC
Q 003747 454 DSVFA----------DIGDEQSLSQSLSTFSGHLKQIGNII-SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 522 (798)
Q Consensus 454 ~~i~~----------~ig~~~si~~~lstfs~~~~ri~~il-~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g 522 (798)
...+. .++.. ......++..++++..+. .++..|.+|++ +++|+... .....+.+.+...+
T Consensus 227 ~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g 298 (416)
T 1udx_A 227 LEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREG 298 (416)
T ss_dssp HHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcC
Confidence 01111 11111 233445666666555443 34679999999 99999765 44455666666667
Q ss_pred CcEEEEEecc
Q 003747 523 SLLTIATTHH 532 (798)
Q Consensus 523 ~t~VIitTHd 532 (798)
.+++++++|.
T Consensus 299 ~~vi~iSA~~ 308 (416)
T 1udx_A 299 LAVLPVSALT 308 (416)
T ss_dssp SCEEECCTTT
T ss_pred CeEEEEECCC
Confidence 7734444454
No 134
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.79 E-value=9e-06 Score=80.54 Aligned_cols=44 Identities=7% Similarity=-0.156 Sum_probs=28.4
Q ss_pred HHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCc
Q 003747 480 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL 524 (798)
Q Consensus 480 i~~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t 524 (798)
+..+.+.+.+|.++++|||+|++|+.....+...+.+ +...+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~-~~~~~~~ 202 (210)
T 1pui_A 159 LNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT-WFSEMQP 202 (210)
T ss_dssp HHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH-HHC----
T ss_pred HHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHH-HHhhccc
Confidence 3455555677788899999999999777776654444 4444443
No 135
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.79 E-value=1.8e-05 Score=84.58 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=26.5
Q ss_pred eeEEECCCCeEEEEEecCCCCchhhhhhcchhh
Q 003747 401 IDIFIARKTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 401 ~disL~~~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
.++++. .+++++|+||||+||||+++.+++..
T Consensus 91 ~~i~~~-~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 91 RLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp CCCCCC-SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred ceeecC-CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345555 78999999999999999999997654
No 136
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.76 E-value=2.5e-05 Score=85.93 Aligned_cols=75 Identities=12% Similarity=-0.001 Sum_probs=54.0
Q ss_pred hhhHHH-HHHHHHHHhC---------CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcc
Q 003747 472 TFSGHL-KQIGNIISQS---------TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 541 (798)
Q Consensus 472 tfs~~~-~ri~~il~~a---------~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~~a~~ 541 (798)
.+|+++ +++..+++++ .+|++|||||||++||+.....+.. ++.. .+.| +|++||. +. ++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~-~l~~---~~qt-~i~~th~-~~--~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLD-LAAS---VPQA-IVTGTEL-AP--GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHH-HHHH---SSEE-EEEESSC-CT--TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHH-HHHh---cCcE-EEEEEec-cc--cCCE
Confidence 456555 4555556666 7999999999999999966666654 3333 2345 8999995 33 7888
Q ss_pred ccceeeeEEEEec
Q 003747 542 NDFFENACMEFDE 554 (798)
Q Consensus 542 ~~~l~ng~v~fd~ 554 (798)
+..+.+|.+...+
T Consensus 337 i~~l~~G~i~~~g 349 (359)
T 2o5v_A 337 TLRAQAGRFTPVA 349 (359)
T ss_dssp EEEEETTEEEECC
T ss_pred EEEEECCEEEecC
Confidence 8889999887643
No 137
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.71 E-value=9.6e-06 Score=80.30 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.3
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
..|++++|+|||||||||++++|++.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 35789999999999999999999765
No 138
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.67 E-value=9.7e-06 Score=82.59 Aligned_cols=34 Identities=18% Similarity=0.107 Sum_probs=20.1
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcc-hh
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVG-LA 432 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Ig-ll 432 (798)
...+++|+ ..|++++|+|||||||||++++|+ +.
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 44566676 678999999999999999999996 54
No 139
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.66 E-value=0.0001 Score=83.97 Aligned_cols=102 Identities=18% Similarity=0.280 Sum_probs=52.6
Q ss_pred EEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHHHhCCCCe
Q 003747 412 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQS 491 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il~~a~~ps 491 (798)
+.|+||+|+|||||+|.|+... +.++..-....+ . ..+ .|. +....+.....+....|.
T Consensus 52 vLL~GppGtGKT~Laraia~~~-----~~~f~~is~~~~--~-~~~--~g~-----------~~~~~r~lf~~A~~~~p~ 110 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEA-----NVPFFHISGSDF--V-ELF--VGV-----------GAARVRDLFAQAKAHAPC 110 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH-----TCCEEEEEGGGT--T-TCC--TTH-----------HHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CCCeeeCCHHHH--H-HHH--hcc-----------cHHHHHHHHHHHHhcCCC
Confidence 8899999999999999996532 211110000000 0 000 110 111111111222346799
Q ss_pred EEEEecCC----------CCCChHHHHHHHHHHHHHHH----hcCCcEEEEEecchhHH
Q 003747 492 LVLLDEIG----------AGTNPLEGTALGMSLLEAFA----ESGSLLTIATTHHGELK 536 (798)
Q Consensus 492 LLLLDEP~----------sGlDp~eg~al~~all~~L~----~~g~t~VIitTHd~el~ 536 (798)
+|+|||+. .|.|+.. ......++..+. ..+. +||.+||..+..
T Consensus 111 ILfIDEid~l~~~r~~~~~g~~~~~-~~~l~~LL~~ld~~~~~~~v-iVIaaTn~~~~L 167 (476)
T 2ce7_A 111 IVFIDEIDAVGRHRGAGLGGGHDER-EQTLNQLLVEMDGFDSKEGI-IVMAATNRPDIL 167 (476)
T ss_dssp EEEEETGGGTCCC---------CHH-HHHHHHHHHHHHHSCGGGTE-EEEEEESCGGGS
T ss_pred EEEEechhhhhhhcccccCcCcHHH-HHHHHHHHHHHhccCCCCCE-EEEEecCChhhh
Confidence 99999993 3556533 333445665554 2344 489999987653
No 140
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.63 E-value=5.1e-05 Score=85.41 Aligned_cols=103 Identities=18% Similarity=0.265 Sum_probs=56.9
Q ss_pred eEEEEEecCCCCchhhhhhcchhhhhccccc---ccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHHHh
Q 003747 410 RVLVITGPNTGGKTICLKTVGLAVMMAKSGL---HILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQ 486 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~---~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il~~ 486 (798)
..+.|.||+|+|||||++.|+........+. ++.+ . . +...+... +.. .. ...+...
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~-~--~--~~~~~~~~----------~~~--~~---~~~~~~~ 190 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-E--K--FLNDLVDS----------MKE--GK---LNEFREK 190 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH-H--H--HHHHHHHH----------HHT--TC---HHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH-H--H--HHHHHHHH----------HHc--cc---HHHHHHH
Confidence 4589999999999999999965332111011 1111 0 0 01111100 000 00 1111222
Q ss_pred CC-CCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecch
Q 003747 487 ST-SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 533 (798)
Q Consensus 487 a~-~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~ 533 (798)
.. ++++|+|||+..-.+..........+++.+.+.|.. +|++||..
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~-iIitt~~~ 237 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQ-IVICSDRE 237 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCE-EEEEESSC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCe-EEEEECCC
Confidence 23 899999999987766423333334566677777886 88899873
No 141
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.62 E-value=0.00016 Score=81.64 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=24.2
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVM 434 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~ 434 (798)
..|++++|.||+|+|||||+..++....
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999865443
No 142
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.62 E-value=3.4e-05 Score=83.06 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
..+++++|+||||+||||+++.|+...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 567899999999999999999997544
No 143
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.62 E-value=0.00017 Score=79.11 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.7
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
+.|+++.|+||||+|||||+..++..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999998643
No 144
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.60 E-value=8.2e-06 Score=87.11 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=21.7
Q ss_pred CCeEEEEEecCCCCchhhhhhcchh
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
.+.+++|+||+|||||||.+.|...
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999988543
No 145
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.56 E-value=0.00015 Score=78.97 Aligned_cols=125 Identities=13% Similarity=0.101 Sum_probs=63.8
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhhc-------cccccccccccc-ccchhhHHhhhcCchh-hHhhhh---hhhh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMMA-------KSGLHILSSEYA-KVPWFDSVFADIGDEQ-SLSQSL---STFS 474 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~a-------q~G~~vpa~~~~-~i~~~~~i~~~ig~~~-si~~~l---stfs 474 (798)
+.|+++.|.||+|+|||||+..++.....+ ....|+.. +.. ....+.++...+|... .+..++ ..++
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~-E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDT-ENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEES-SSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEEC-CCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCC
Confidence 468999999999999999999886543321 11123333 221 1111122333344321 111111 0111
Q ss_pred -HHHHH----HHHHHHhC-CCCeEEEEecCCCCCChH--------H----HHHHHHHHHHHHHhcCCcEEEEEecch
Q 003747 475 -GHLKQ----IGNIISQS-TSQSLVLLDEIGAGTNPL--------E----GTALGMSLLEAFAESGSLLTIATTHHG 533 (798)
Q Consensus 475 -~~~~r----i~~il~~a-~~psLLLLDEP~sGlDp~--------e----g~al~~all~~L~~~g~t~VIitTHd~ 533 (798)
.+... +...+... .++++|++|.+++-..+. + ...+...+.....+.+++ ||+++|..
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~-Vi~~nq~~ 274 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVA-VFVTNQMT 274 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEECC-
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCE-EEEEeece
Confidence 11111 22222222 689999999998765431 1 123333344444456887 89998864
No 146
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.54 E-value=1.7e-05 Score=85.40 Aligned_cols=125 Identities=18% Similarity=0.162 Sum_probs=60.8
Q ss_pred CCeEEEEEecCCCCchhhhhhcchhhhhc---c-ccccccccc-ccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHH
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGLAVMMA---K-SGLHILSSE-YAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 482 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igll~~~a---q-~G~~vpa~~-~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~ 482 (798)
.+..++|+||+|+|||||++.++...... . .-.++.+.. ......+..++..++..... .+. ....-...+..
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~-~~~-~~~~~~~~l~~ 121 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPF-TGL-SIAELYRRLVK 121 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCS-SSC-CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCC-CHHHHHHHHHH
Confidence 45679999999999999999986432211 0 011122100 00111223333333321000 000 01111233444
Q ss_pred HHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHH---hcCCcEEEEEecchhHH
Q 003747 483 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA---ESGSLLTIATTHHGELK 536 (798)
Q Consensus 483 il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~---~~g~t~VIitTHd~el~ 536 (798)
.+.....|.+|+|||+....+... ......+++.+. ..+.+ +|++||+..+.
T Consensus 122 ~l~~~~~~~vlilDE~~~l~~~~~-~~~l~~l~~~~~~~~~~~~~-~I~~~~~~~~~ 176 (386)
T 2qby_A 122 AVRDYGSQVVIVLDEIDAFVKKYN-DDILYKLSRINSEVNKSKIS-FIGITNDVKFV 176 (386)
T ss_dssp HHHTCCSCEEEEEETHHHHHHSSC-STHHHHHHHHHHSCCC--EE-EEEEESCGGGG
T ss_pred HHhccCCeEEEEEcChhhhhccCc-CHHHHHHhhchhhcCCCeEE-EEEEECCCChH
Confidence 444455589999999966542210 122334554442 22444 89999987653
No 147
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.54 E-value=9.3e-05 Score=84.92 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=22.1
Q ss_pred eEEECCCCeEEEEEecCCCCchhhhhhcc
Q 003747 402 DIFIARKTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 402 disL~~~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.+++.. +..++|.|++||||||+|++|.
T Consensus 161 ~ldL~~-~pHlLIaG~TGSGKSt~L~~li 188 (512)
T 2ius_A 161 VADLAK-MPHLLVAGTTGSGASVGVNAMI 188 (512)
T ss_dssp EEEGGG-SCSEEEECCTTSSHHHHHHHHH
T ss_pred EEEccc-CceEEEECCCCCCHHHHHHHHH
Confidence 344443 4569999999999999999984
No 148
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.51 E-value=3.2e-05 Score=77.60 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=23.9
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
..|++++|+||||||||||+++|+++.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999997654
No 149
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.50 E-value=3.8e-05 Score=87.51 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=32.1
Q ss_pred cceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhhhh
Q 003747 397 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM 435 (798)
Q Consensus 397 ~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~~~ 435 (798)
..++.+++|+ +. ++++|+|||||||||||++|+++...
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3467888888 66 99999999999999999999766543
No 150
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.47 E-value=2.7e-05 Score=76.77 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=21.7
Q ss_pred CeEEEEEecCCCCchhhhhhcchhh
Q 003747 409 TRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
+++++|+|||||||||++|+|.+..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999996543
No 151
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.39 E-value=3.8e-05 Score=76.79 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=21.1
Q ss_pred CCeEEEEEecCCCCchhhhhhcchh
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
.|++++|+||||||||||+++|.+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4678999999999999999999654
No 152
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.39 E-value=5.2e-05 Score=74.19 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=23.1
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
..|++++|+|||||||||++|+|++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 46789999999999999999999654
No 153
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.34 E-value=0.00033 Score=70.13 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=20.3
Q ss_pred CeEEEEEecCCCCchhhhhhcch
Q 003747 409 TRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+..++|+||+|+||||+++.++.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999854
No 154
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.33 E-value=7.7e-05 Score=72.62 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=23.4
Q ss_pred eEEEC-CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 402 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 402 disL~-~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
++++. .+| +++|+|||||||||+|++|.++
T Consensus 19 ~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 19 KVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp CEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 34444 344 8999999999999999999644
No 155
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.30 E-value=0.0011 Score=80.50 Aligned_cols=22 Identities=23% Similarity=0.219 Sum_probs=19.4
Q ss_pred EEEEEecCCCCchhhhhhcchh
Q 003747 411 VLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igll 432 (798)
-++|+||+|+||||+++.++..
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998654
No 156
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.30 E-value=9.9e-05 Score=73.07 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.6
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
..+.|+||+|+|||||++.++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999864
No 157
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.22 E-value=0.00042 Score=74.64 Aligned_cols=125 Identities=13% Similarity=0.120 Sum_probs=62.4
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhhc-------cccccccccccc-ccchhhHHhhhcCchh-hHhhhh---hhhh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMMA-------KSGLHILSSEYA-KVPWFDSVFADIGDEQ-SLSQSL---STFS 474 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~a-------q~G~~vpa~~~~-~i~~~~~i~~~ig~~~-si~~~l---stfs 474 (798)
+.|+++.|.||+|+|||||+..++...... ....|+.. +.. ....+.++...+|... .+..++ ..+.
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~-e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDT-EGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEES-SSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEEC-CCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 467899999999999999999886543222 11133332 221 1111122333344321 111111 1111
Q ss_pred H-HHH----HHHHHHHhCCCCeEEEEecCCCCCCh--------HH----HHHHHHHHHHHHHhcCCcEEEEEecch
Q 003747 475 G-HLK----QIGNIISQSTSQSLVLLDEIGAGTNP--------LE----GTALGMSLLEAFAESGSLLTIATTHHG 533 (798)
Q Consensus 475 ~-~~~----ri~~il~~a~~psLLLLDEP~sGlDp--------~e----g~al~~all~~L~~~g~t~VIitTHd~ 533 (798)
. ++. .+...+....++++|++|.+++-... .+ ...+...+.....+.+++ ||+++|-.
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~-Vi~~nq~~ 258 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIA-VIITNQVM 258 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEEEC-
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCE-EEEEccee
Confidence 1 111 12222222268999999999865432 11 122333333333456887 88888853
No 158
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.20 E-value=0.00025 Score=77.38 Aligned_cols=117 Identities=16% Similarity=0.071 Sum_probs=57.4
Q ss_pred CeEEEEEecCCCCchhhhhhcchhhhhcccccccccccccccchhh------HHhhhcCchhhHhhhhhhhhHHHHHHHH
Q 003747 409 TRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD------SVFADIGDEQSLSQSLSTFSGHLKQIGN 482 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igll~~~aq~G~~vpa~~~~~i~~~~------~i~~~ig~~~si~~~lstfs~~~~ri~~ 482 (798)
.-.++|+|+||+|||||++.+.+..... .+..... ....+..+. .++..-|..+ ......+....+...
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~-~~~~~~t-~~~~~~~~~~~~~~~~l~Dt~G~~~---~~~~~~~~~~~~~~~ 241 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEI-ASYPFTT-RGINVGQFEDGYFRYQIIDTPGLLD---RPISERNEIEKQAIL 241 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEE-ECCTTCS-SCEEEEEEEETTEEEEEEECTTTSS---SCSTTSCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcc-CCCCCee-eceeEEEEEecCceEEEEeCCCccc---cchhhhhHHHHHHHH
Confidence 3468999999999999999986432110 0100000 000111000 0111112111 111111222222222
Q ss_pred HHHhCCCCeEEEEe-cCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEe--cch
Q 003747 483 IISQSTSQSLVLLD-EIGAGTNPLEGTALGMSLLEAFAESGSLLTIATT--HHG 533 (798)
Q Consensus 483 il~~a~~psLLLLD-EP~sGlDp~eg~al~~all~~L~~~g~t~VIitT--Hd~ 533 (798)
.+....+.-|+++| +++.|+|......+...+.... . +.+ +|++. ||.
T Consensus 242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~-~~p-iilV~NK~Dl 292 (357)
T 2e87_A 242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-K-DLP-FLVVINKIDV 292 (357)
T ss_dssp GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-T-TSC-EEEEECCTTT
T ss_pred HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-C-CCC-EEEEEECccc
Confidence 33334677889999 9999999866555544333321 1 666 56666 674
No 159
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.20 E-value=0.00016 Score=87.07 Aligned_cols=130 Identities=14% Similarity=0.072 Sum_probs=62.1
Q ss_pred CCeEEEEEecCCCCchhhhhhcchhhhhccc-c----cccccccccccchhhHHhhhcCch--hhH------------hh
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGLAVMMAKS-G----LHILSSEYAKVPWFDSVFADIGDE--QSL------------SQ 468 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igll~~~aq~-G----~~vpa~~~~~i~~~~~i~~~ig~~--~si------------~~ 468 (798)
+++.++|+|||||||||++.++.+....... | ...|. ..........+...++.. ..+ ..
T Consensus 108 ~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~-r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~ 186 (773)
T 2xau_A 108 NNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPR-RVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKT 186 (773)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESC-HHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCch-HHHHHHHHHHHHHHhCCchhheecceeccccccCCCC
Confidence 4577999999999999988877332221110 1 11231 111111112222222110 000 00
Q ss_pred hhhhhhHHH-HHHHHHHHhCCCCeEEEEecCCC-CCChHHHHHHHHHHHHHHHhcCCcEEEE-EecchhH-Hhhhc
Q 003747 469 SLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGA-GTNPLEGTALGMSLLEAFAESGSLLTIA-TTHHGEL-KTLKY 540 (798)
Q Consensus 469 ~lstfs~~~-~ri~~il~~a~~psLLLLDEP~s-GlDp~eg~al~~all~~L~~~g~t~VIi-tTHd~el-~~~a~ 540 (798)
.+...+.++ .+.......+.++++|+|||+.. ++|......+...+... .....+ |++ +||+.+. ..+..
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~-~~~~~i-Il~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKR-RPDLKI-IIMSATLDAEKFQRYFN 260 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHH-CTTCEE-EEEESCSCCHHHHHHTT
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHh-CCCceE-EEEeccccHHHHHHHhc
Confidence 111122333 33332223578999999999985 88874444443333321 122233 555 5998543 34443
No 160
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.18 E-value=0.00011 Score=72.03 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.1
Q ss_pred CCeEEEEEecCCCCchhhhhhcchh
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
.|++++|+||||||||||++.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4689999999999999999998653
No 161
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.17 E-value=0.00033 Score=78.79 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=22.4
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
..+.+++++||||+||||++..|+..
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999998643
No 162
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.17 E-value=0.00028 Score=75.27 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=19.6
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
..+.|+||+|+|||||++.++.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999999864
No 163
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.15 E-value=0.00092 Score=70.09 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.2
Q ss_pred CeEEEEEecCCCCchhhhhhcch
Q 003747 409 TRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+..+.|.||+|+||||+++.++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45689999999999999999864
No 164
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.14 E-value=0.00013 Score=72.62 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=22.7
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
..|++++|+|||||||||++|+|+..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999999999643
No 165
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.13 E-value=0.00012 Score=71.83 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.7
Q ss_pred CeEEEEEecCCCCchhhhhhcch
Q 003747 409 TRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
|++++|+|||||||||++|+|+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 47899999999999999999954
No 166
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.09 E-value=0.0015 Score=74.02 Aligned_cols=21 Identities=24% Similarity=0.223 Sum_probs=18.8
Q ss_pred EEEEecCCCCchhhhhhcchh
Q 003747 412 LVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igll 432 (798)
++|+||+|+||||+.+.++..
T Consensus 204 ~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 204 PVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp EEEESCTTTTTHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998654
No 167
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.06 E-value=0.00016 Score=71.30 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=23.1
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
..|.+++|+|||||||||++++|....
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 357899999999999999999996543
No 168
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.05 E-value=0.00019 Score=76.89 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=23.1
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
..|.+++|+||||||||||+++|+++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999654
No 169
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.01 E-value=0.00019 Score=71.28 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=22.1
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcch
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
......+++|. ..+++++|+||+||||||+.+.|+.
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 45678899998 7788999999999999999999863
No 170
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.92 E-value=0.00033 Score=71.44 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=23.5
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
..|.+++|.|||||||||++++|++.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 56899999999999999999999765
No 171
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.92 E-value=0.00012 Score=79.64 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=30.6
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhh
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
.+..++++. ..|.+++|+|||||||||||++|++..
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 466777777 788999999999999999999997543
No 172
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.91 E-value=0.00028 Score=70.81 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.9
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
+.|++++|+|||||||||+++.|...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 56889999999999999999998543
No 173
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.90 E-value=0.0018 Score=69.97 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=27.5
Q ss_pred eeEEEC-CCCeEEEEEecCCCCchhhhhhcchhh
Q 003747 401 IDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 401 ~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
.++++. ..+++++|+||||+||||++..|+...
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456665 678999999999999999999997543
No 174
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.85 E-value=0.0023 Score=70.12 Aligned_cols=120 Identities=22% Similarity=0.186 Sum_probs=60.0
Q ss_pred CCeEEEEEecCCCCchhhhhhcchhhhh-cccccccccccccccchhhHHhhhcCchh-hHh-hhhhhhhHHHHHHHHHH
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGLAVMM-AKSGLHILSSEYAKVPWFDSVFADIGDEQ-SLS-QSLSTFSGHLKQIGNII 484 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igll~~~-aq~G~~vpa~~~~~i~~~~~i~~~ig~~~-si~-~~lstfs~~~~ri~~il 484 (798)
.|+++.|.||+|+|||||...++..... .....|+.. +...- ......+|..- ++. ....+ ..+...+...+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~-E~s~~---~~~a~~~g~~~~~l~i~~~~~-~e~~~~~~~~l 136 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA-EHALD---PIYARKLGVDIDNLLCSQPDT-GEQALEICDAL 136 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES-SCCCC---HHHHHHTTCCGGGCEEECCSS-HHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC-CCCcc---HHHHHHcCCChhheeeeCCCC-HHHHHHHHHHH
Confidence 6789999999999999999887543221 111233333 11110 11122333211 000 00001 11222222222
Q ss_pred HhCCCCeEEEEecCCCCCChHH----------------HHHHHHHHHHHHHhcCCcEEEEEecch
Q 003747 485 SQSTSQSLVLLDEIGAGTNPLE----------------GTALGMSLLEAFAESGSLLTIATTHHG 533 (798)
Q Consensus 485 ~~a~~psLLLLDEP~sGlDp~e----------------g~al~~all~~L~~~g~t~VIitTHd~ 533 (798)
....++++|++|.++.-....+ .......+...+.+.+++ ||+++|-.
T Consensus 137 ~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~-VI~~nq~~ 200 (356)
T 1u94_A 137 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL-LIFINQIR 200 (356)
T ss_dssp HHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCE-EEEEEC--
T ss_pred HhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCE-EEEEeccc
Confidence 2236799999999987663211 012223344444677887 88888853
No 175
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.84 E-value=0.00038 Score=69.23 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
..|++++|+|||||||||++|.|+...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999996543
No 176
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.82 E-value=0.0017 Score=64.12 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.5
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
..++|+||.|+||||+++.++.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999853
No 177
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.82 E-value=0.0004 Score=76.35 Aligned_cols=33 Identities=30% Similarity=0.199 Sum_probs=26.2
Q ss_pred eeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhh
Q 003747 400 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 400 ~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
..++++. ..| +++|+||||+||||+|++|+++.
T Consensus 17 ~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 17 LAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp CCSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeeeEEEEcCC-eEEEECCCCCChhHHHHHHHHhc
Confidence 3455665 455 99999999999999999997553
No 178
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.81 E-value=0.0038 Score=59.41 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=19.7
Q ss_pred CeEEEEEecCCCCchhhhhhcch
Q 003747 409 TRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
...+.|+||.|+||||+++.++.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999999854
No 179
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.81 E-value=0.00031 Score=67.50 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=21.0
Q ss_pred CeEEEEEecCCCCchhhhhhcchh
Q 003747 409 TRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
+.+++|+|||||||||+++.|+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999643
No 180
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.79 E-value=0.0005 Score=73.98 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=20.5
Q ss_pred CCeEEEEEecCCCCchhhhhhcch
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.+..+.|+||.|+||||+++.++.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999864
No 181
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.78 E-value=0.00043 Score=66.79 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=22.5
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
..|.+++|+|||||||||+++.|+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 35789999999999999999998643
No 182
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.78 E-value=0.0016 Score=69.71 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=22.6
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
+.|+++.|.||+|+|||||...++..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999988643
No 183
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.71 E-value=0.00051 Score=77.00 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=26.7
Q ss_pred eeeeEEECCCCeEEEEEecCCCCchhhhhhcchh
Q 003747 399 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 399 V~~disL~~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
++.++ +...+.+++|+|||||||||||++|.+.
T Consensus 158 ~L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 158 NFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp HHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 45555 4566789999999999999999998654
No 184
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.69 E-value=0.0007 Score=64.83 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=22.9
Q ss_pred eEEECCCCeEEEEEecCCCCchhhhhhcchh
Q 003747 402 DIFIARKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 402 disL~~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
.+.+. ..+.+|+||||+||||+|..|...
T Consensus 18 ~i~f~--~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 18 VVEFK--EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEECC--SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEcC--CCeEEEECCCCCCHHHHHHHHHHH
Confidence 34444 358999999999999999998643
No 185
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.68 E-value=0.0024 Score=60.98 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=19.6
Q ss_pred CeEEEEEecCCCCchhhhhhcch
Q 003747 409 TRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
...+.|+||.|+||||+++.++.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999854
No 186
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.68 E-value=0.00046 Score=71.60 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=22.1
Q ss_pred CCCeEEEEEecCCCCchhhhhhcc
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
..+.+++|+|||||||||++|+|+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 567899999999999999999996
No 187
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.56 E-value=0.00081 Score=66.99 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=22.7
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
..+.+++|+|||||||||+++.|+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998643
No 188
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.51 E-value=0.00081 Score=72.30 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.6
Q ss_pred eEEEEEecCCCCchhhhhhcchh
Q 003747 410 RVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igll 432 (798)
++++|+||||||||||||.|.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 57999999999999999998644
No 189
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.50 E-value=8.5e-05 Score=76.60 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=24.0
Q ss_pred eEEECCCCeEEEEEecCCCCchhhhhhcchhh
Q 003747 402 DIFIARKTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 402 disL~~~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
+++|.. .+++|+|||||||||||++|+++.
T Consensus 22 ~~~~~~--~~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 22 TFDLDE--LVTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp EECHHH--HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEcC--cEEEEECCCCCCHHHHHHHHhccc
Confidence 444443 688999999999999999996543
No 190
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.50 E-value=0.0021 Score=70.03 Aligned_cols=115 Identities=10% Similarity=0.057 Sum_probs=59.7
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhhcc-cccccccccccccchhhHHhh---hcCchhhHhhhhhhhh-HHHHHHH
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-SGLHILSSEYAKVPWFDSVFA---DIGDEQSLSQSLSTFS-GHLKQIG 481 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~aq-~G~~vpa~~~~~i~~~~~i~~---~ig~~~si~~~lstfs-~~~~ri~ 481 (798)
..|++++|.|++|+|||||+..++....... ..+++.. +...-.+..+++. .+.... +.. ..++ .+..++.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl-Ems~~ql~~Rlls~~~~v~~~~-l~~--g~Ls~~e~~~l~ 119 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL-EMSAEQLALRALSDLTSINMHD-LES--GRLDDDQWENLA 119 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES-SSCHHHHHHHHHHHHHCCCHHH-HHH--TCCCHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC-CCCHHHHHHHHHHHhhCCCHHH-Hhc--CCCCHHHHHHHH
Confidence 5789999999999999999988864433211 1112221 2221112222221 122211 111 1233 3445566
Q ss_pred HHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHH-hc-CCcEEEEEecc
Q 003747 482 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA-ES-GSLLTIATTHH 532 (798)
Q Consensus 482 ~il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~-~~-g~t~VIitTHd 532 (798)
.+...+.++++.+.|+|+. ++.+..+ .++.+. .. |.. +|++-|.
T Consensus 120 ~a~~~l~~~~l~I~d~~~~--si~~i~~----~ir~l~~~~gg~~-lIVIDyL 165 (338)
T 4a1f_A 120 KCFDHLSQKKLFFYDKSYV--RIEQIRL----QLRKLKSQHKELG-IAFIDYL 165 (338)
T ss_dssp HHHHHHHHSCEEEECCTTC--CHHHHHH----HHHHHHHHCTTEE-EEEEEEE
T ss_pred HHHHHHhcCCeEEeCCCCC--cHHHHHH----HHHHHHHhcCCCC-EEEEech
Confidence 6655566778999999854 4433222 333444 34 555 6666553
No 191
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.49 E-value=0.0021 Score=66.89 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.4
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
..+.|.||.|+||||+++.++.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4489999999999999999854
No 192
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.48 E-value=0.0048 Score=65.43 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.8
Q ss_pred CCeEEEEEecCCCCchhhhhhcch
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.++.+.|+||+|+||||+.+.|+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHH
Confidence 345689999999999999999864
No 193
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.45 E-value=0.0035 Score=75.80 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.4
Q ss_pred CCeEEEEEecCCCCchhhhhhcchh
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
.++.++|+||||+|||||+|+|+..
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4566999999999999999999643
No 194
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.42 E-value=0.0033 Score=63.91 Aligned_cols=46 Identities=22% Similarity=0.174 Sum_probs=28.5
Q ss_pred hCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCCcEEEEEecc
Q 003747 486 QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHH 532 (798)
Q Consensus 486 ~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~-~g~t~VIitTHd 532 (798)
...+++++|+..+.+..+..+...+ ..+++.+.. .+..++|+.||-
T Consensus 109 ~~~~~~~~l~v~d~~~~~~~~~~~l-~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 109 TSPGPHALLLVVPLGRYTEEEHKAT-EKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TTTCCSEEEEEEETTCCSSHHHHHH-HHHHHHHHHHHGGGEEEEEECG
T ss_pred cCCCCcEEEEEeeCCCCCHHHHHHH-HHHHHHhhhhccceEEEEEeCC
Confidence 3568899999998877777444443 445544432 122347888883
No 195
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.42 E-value=0.00092 Score=71.30 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.5
Q ss_pred CCeEEEEEecCCCCchhhhhhcch
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.+++++|+||||+||||||++|++
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHST
T ss_pred cCCeEEEECCCCCcHHHHHHHhcc
Confidence 467899999999999999999953
No 196
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.38 E-value=0.00089 Score=76.87 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=27.2
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhh
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
+..++++. ..|.+++|+|||||||||||++|.++.
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34455555 567779999999999999999986543
No 197
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.37 E-value=0.0042 Score=63.76 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.1
Q ss_pred EEEEecCCCCchhhhhhcchh
Q 003747 412 LVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igll 432 (798)
++|+||+|+||||+++.|+..
T Consensus 48 vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 889999999999999999653
No 198
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.37 E-value=0.0011 Score=66.91 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.7
Q ss_pred CCeEEEEEecCCCCchhhhhhcch
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.|++++|+||||+|||||++.|..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 578999999999999999999853
No 199
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.35 E-value=0.0028 Score=65.02 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=56.6
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhh-ccccccc-ccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHH
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMM-AKSGLHI-LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 484 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~-aq~G~~v-pa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il 484 (798)
..|.+++|+||-|+||||++-.+...... ....+++ |. ...+ + ..++..++|..-... .+... ..+...+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~-~d~r-~-~~~i~srlG~~~~~~-~~~~~----~~i~~~i 81 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPK-IDTR-S-IRNIQSRTGTSLPSV-EVESA----PEILNYI 81 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-CCGG-G-CSSCCCCCCCSSCCE-EESST----HHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEec-cCch-H-HHHHHHhcCCCcccc-ccCCH----HHHHHHH
Confidence 46789999999999999977655321111 1111111 22 1111 1 123444454321100 01111 1122222
Q ss_pred Hh---CCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecch
Q 003747 485 SQ---STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 533 (798)
Q Consensus 485 ~~---a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~ 533 (798)
.. -.++++|++||.-. +++ .+.. ++..+.+.|.+ ||++-|+.
T Consensus 82 ~~~~~~~~~dvViIDEaQ~-l~~----~~ve-~l~~L~~~gi~-Vil~Gl~~ 126 (223)
T 2b8t_A 82 MSNSFNDETKVIGIDEVQF-FDD----RICE-VANILAENGFV-VIISGLDK 126 (223)
T ss_dssp HSTTSCTTCCEEEECSGGG-SCT----HHHH-HHHHHHHTTCE-EEEECCSB
T ss_pred HHHhhCCCCCEEEEecCcc-CcH----HHHH-HHHHHHhCCCe-EEEEeccc
Confidence 21 24589999999943 544 2222 44556667887 89999943
No 200
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.33 E-value=0.0089 Score=62.67 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.8
Q ss_pred eEEEEEecCCCCchhhhhhcchhh
Q 003747 410 RVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
..++|+||+|+||||+.+.|+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 468999999999999999997543
No 201
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.33 E-value=0.0012 Score=73.66 Aligned_cols=30 Identities=20% Similarity=0.443 Sum_probs=24.5
Q ss_pred EEECCCCeEEEEEecCCCCchhhhhhcchhh
Q 003747 403 IFIARKTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 403 isL~~~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
+++. .+++++|+||||+||||+|++|+++.
T Consensus 21 ~~~~-~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 21 VGFG-ESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp EECT-TCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEec-CCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 4443 46789999999999999999996544
No 202
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.33 E-value=0.0015 Score=69.89 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.2
Q ss_pred CeEEEEEecCCCCchhhhhhcch
Q 003747 409 TRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+..+.|.||.|+|||+|++.|+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999864
No 203
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.31 E-value=0.0003 Score=73.45 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=30.9
Q ss_pred CcceeeeEEEC-CC---CeEEEEEecCCCCchhhhhhcch
Q 003747 396 AHPVPIDIFIA-RK---TRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 396 ~~~V~~disL~-~~---g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+..++.++++. .. |++++|+||+||||||+.+.|+.
T Consensus 31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 35688899888 66 88999999999999999999964
No 204
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.29 E-value=0.0012 Score=70.56 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=21.2
Q ss_pred CCeEEEEEecCCCCchhhhhhcc
Q 003747 408 KTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.|++++|+||||+|||||+++|.
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999999995
No 205
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.29 E-value=0.012 Score=63.72 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.4
Q ss_pred CCCeEEEEEecCCCCchhhhhhcch
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
..+.++.|.||.|+|||||...++.
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4567789999999999999999854
No 206
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.27 E-value=0.0012 Score=71.46 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.5
Q ss_pred eEEEEEecCCCCchhhhhhcchh
Q 003747 410 RVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igll 432 (798)
-+++|+||||||||||+++|..+
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998654
No 207
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.26 E-value=0.0012 Score=65.38 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=19.4
Q ss_pred EEEEEecCCCCchhhhhhcch
Q 003747 411 VLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igl 431 (798)
+++|+|||||||||+.+.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999965
No 208
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.26 E-value=0.00051 Score=72.37 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=25.7
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
.+..++++. +.| ++|+||||+|||||+|+|++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHH
Confidence 355556666 444 999999999999999999754
No 209
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.25 E-value=0.0056 Score=64.85 Aligned_cols=22 Identities=27% Similarity=0.155 Sum_probs=19.3
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
..+.|.||.|+|||++.+.|+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588899999999999999864
No 210
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.25 E-value=0.0045 Score=73.25 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=29.2
Q ss_pred CCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhH
Q 003747 487 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 535 (798)
Q Consensus 487 a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el 535 (798)
..+..++++| ++.|+++... .+++.+...+.+ +|++.|..+.
T Consensus 97 ~ad~~ilVvD-~~~g~~~qt~-----~~~~~~~~~~ip-~ilv~NKiD~ 138 (665)
T 2dy1_A 97 AADAALVAVS-AEAGVQVGTE-----RAWTVAERLGLP-RMVVVTKLDK 138 (665)
T ss_dssp HCSEEEEEEE-TTTCSCHHHH-----HHHHHHHHTTCC-EEEEEECGGG
T ss_pred hcCcEEEEEc-CCcccchhHH-----HHHHHHHHccCC-EEEEecCCch
Confidence 3577899999 9999998433 233344556787 6777887665
No 211
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.22 E-value=0.0019 Score=64.88 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=22.6
Q ss_pred eEEECCCCeEEEEEecCCCCchhhhhhcch
Q 003747 402 DIFIARKTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 402 disL~~~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.+.|. ..+.+|+||||+||||+|..|..
T Consensus 18 ~i~f~--~~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 18 VVEFK--EGINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEECC--SEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEeC--CCeEEEEcCCCCCHHHHHHHHHH
Confidence 44454 35899999999999999999853
No 212
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.21 E-value=0.0013 Score=72.18 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.7
Q ss_pred CCeEEEEEecCCCCchhhhhhcch
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.|++++|+||||+|||||+++|.+
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCEEEEECCCCccHHHHHHHHhc
Confidence 568899999999999999999953
No 213
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.20 E-value=0.0041 Score=63.28 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=19.8
Q ss_pred CCeEEEEEecCCCCchhhhhhcc
Q 003747 408 KTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.|+.++|+||+||||||++..+.
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHHH
Confidence 45789999999999999988763
No 214
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.18 E-value=0.00064 Score=75.18 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=28.9
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcch
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.+..+++++ +.+++++|+||||+|||||+++|++
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 356677777 7788999999999999999999964
No 215
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.15 E-value=0.0016 Score=64.42 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=19.3
Q ss_pred EEEEEecCCCCchhhhhhcch
Q 003747 411 VLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igl 431 (798)
+++|+|||||||||+.+.|+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999865
No 216
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.09 E-value=0.0021 Score=63.87 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.1
Q ss_pred CCCeEEEEEecCCCCchhhhhhcch
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
..+.+++|+||+||||||+.+.|+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568899999999999999999864
No 217
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.08 E-value=0.00065 Score=79.41 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=29.5
Q ss_pred CcceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchhh
Q 003747 396 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 396 ~~~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
...+..++++. ..++.++|+||||+|||||+++|+...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 34455566655 566789999999999999999997654
No 218
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.08 E-value=0.0018 Score=64.95 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.9
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.+++|+||+||||||+.+.|+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 219
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.08 E-value=0.018 Score=64.61 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=23.3
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
..|.+++|.|++|+|||||+..++...
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 568899999999999999998886543
No 220
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.99 E-value=0.021 Score=62.83 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.4
Q ss_pred CCCeEEEEEecCCCCchhhhhhcch
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+.|+++.|.||.|+|||||.-.++.
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3678999999999999999887753
No 221
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.99 E-value=0.001 Score=71.65 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.8
Q ss_pred CCeEEEEEecCCCCchhhhhhcch
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.|++++|+||||+|||||+++|.+
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHhcc
Confidence 578999999999999999999953
No 222
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.94 E-value=0.0025 Score=61.79 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=22.2
Q ss_pred CCeEEEEEecCCCCchhhhhhcchh
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
.|.+++|+|++||||||+++.|+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999999998653
No 223
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.87 E-value=0.0014 Score=64.51 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.3
Q ss_pred eEEEEEecCCCCchhhhhhcchh
Q 003747 410 RVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igll 432 (798)
++++|+||||||||||++.|.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999544
No 224
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.87 E-value=0.001 Score=68.29 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=24.2
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
+..++++. +.| ++|+||||+|||||+|+|+..
T Consensus 40 ~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 40 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 34445555 333 899999999999999999654
No 225
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.86 E-value=0.0026 Score=62.34 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=19.9
Q ss_pred EEEEEecCCCCchhhhhhcchhh
Q 003747 411 VLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
.++|+||||+|||||++.+.+..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999986543
No 226
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.81 E-value=0.042 Score=58.75 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=22.8
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
..|++++|.|+.|+|||||+..++..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 57899999999999999999887643
No 227
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.75 E-value=0.0027 Score=62.35 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.1
Q ss_pred EEEEecCCCCchhhhhhcchh
Q 003747 412 LVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igll 432 (798)
++|+||||+|||||++.+.+.
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 889999999999999998654
No 228
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.73 E-value=0.023 Score=61.68 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=19.9
Q ss_pred CeEEEEEecCCCCchhhhhhcch
Q 003747 409 TRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
...+.|+||.|+||||+.+.++.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999853
No 229
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.69 E-value=0.0013 Score=68.66 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=24.4
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
+..++++. +.| ++|+||||+|||||+++|+..
T Consensus 64 ~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 64 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHH
Confidence 44455555 333 899999999999999999654
No 230
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.68 E-value=0.019 Score=65.73 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=19.3
Q ss_pred EEEEecCCCCchhhhhhcchh
Q 003747 412 LVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igll 432 (798)
++|+||||+|||||+|+|+..
T Consensus 67 vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999754
No 231
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.64 E-value=0.0054 Score=67.18 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=23.4
Q ss_pred EEECCCCeEEEEEecCCCCchhhhhhcchh
Q 003747 403 IFIARKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 403 isL~~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
..++-+..+.+|+||||+||||+|-.|+..
T Consensus 19 ~~i~f~~gl~vi~G~NGaGKT~ileAI~~~ 48 (371)
T 3auy_A 19 SRIKFEKGIVAIIGENGSGKSSIFEAVFFA 48 (371)
T ss_dssp EEEECCSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEecCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 344423368999999999999999999653
No 232
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.63 E-value=0.0033 Score=62.52 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.8
Q ss_pred CCCeEEEEEecCCCCchhhhhhcch
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
..|.+++|+||+||||||+.+.|..
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHH
Confidence 3568899999999999999999853
No 233
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.61 E-value=0.011 Score=66.48 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.9
Q ss_pred CCeEEEEEecCCCCchhhhhhcch
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
...+++++||+|+||||++..|+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 467899999999999999988753
No 234
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.59 E-value=0.039 Score=56.10 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.4
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
..+.|+||.|+||||+.+.++.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4488999999999999999864
No 235
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.55 E-value=0.016 Score=57.32 Aligned_cols=21 Identities=43% Similarity=0.551 Sum_probs=17.9
Q ss_pred CeEEEEEecCCCCchhhhhhc
Q 003747 409 TRVLVITGPNTGGKTICLKTV 429 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~I 429 (798)
|.+++|+||.|+||||++-.+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~ 23 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSF 23 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHH
Confidence 678999999999999997433
No 236
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.55 E-value=0.03 Score=66.89 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=19.4
Q ss_pred EEEEEecCCCCchhhhhhcchh
Q 003747 411 VLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igll 432 (798)
-++|+||.|+||||+.+.++..
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998654
No 237
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.54 E-value=0.0067 Score=70.00 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.9
Q ss_pred CCeEEEEEecCCCCchhhhhhcchhh
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
.+.+++|+||||+|||||+|+|+...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 57789999999999999999997554
No 238
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.53 E-value=0.014 Score=60.27 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=53.6
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhh-cccc-cccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHH
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMM-AKSG-LHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 484 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~-aq~G-~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il 484 (798)
..|.+.+++||=|+||||.|--....... .+.. .+-|. ...+.+ ..+..++|..-... ..... .+ ++
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~-~D~Ryg--~~i~sr~G~~~~a~-~i~~~-~d------i~ 85 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYS--SSFCTHDRNTMEAL-PACLL-RD------VA 85 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEET-TCCCC-------------CEEE-EESSG-GG------GH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeec-CCccch--HHHHhhcCCeeEEE-ecCCH-HH------HH
Confidence 45789999999999999854333221111 1111 12233 222222 33444444321000 00111 00 11
Q ss_pred HhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhH
Q 003747 485 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 535 (798)
Q Consensus 485 ~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el 535 (798)
..+.+.++|++||----.+ ...+++.+.+.|.. ||++-++.++
T Consensus 86 ~~~~~~dvViIDEaQF~~~-------v~el~~~l~~~gi~-VI~~GL~~DF 128 (234)
T 2orv_A 86 QEALGVAVIGIDEGQFFPD-------IVEFCEAMANAGKT-VIVAALDGTF 128 (234)
T ss_dssp HHHTTCSEEEESSGGGCTT-------HHHHHHHHHHTTCE-EEEECCSBCT
T ss_pred HHhccCCEEEEEchhhhhh-------HHHHHHHHHhCCCE-EEEEeccccc
Confidence 2226789999999855543 23466677778887 8999999443
No 239
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.49 E-value=0.0035 Score=67.55 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.6
Q ss_pred eEEEEEecCCCCchhhhhhcchh
Q 003747 410 RVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igll 432 (798)
+.++|+||||+|||||+|+|+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999754
No 240
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.47 E-value=0.044 Score=51.37 Aligned_cols=20 Identities=10% Similarity=0.051 Sum_probs=18.3
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
+.|.||.|+|||++.+.|+.
T Consensus 30 vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCC
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 88999999999999999853
No 241
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.46 E-value=0.0034 Score=72.75 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=23.5
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
..|.+++|+|||||||||++|+|+...
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhh
Confidence 467899999999999999999996543
No 242
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.39 E-value=0.0041 Score=61.50 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.3
Q ss_pred CeEEEEEecCCCCchhhhhhcch
Q 003747 409 TRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
..+++|+||+||||||+.+.|+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999854
No 243
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.38 E-value=0.0029 Score=72.45 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=25.1
Q ss_pred eeeEEEC-CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 400 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 400 ~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
..+++|. .+| +.+|+|+||+||||+|..|.++
T Consensus 51 ~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 51 ITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp BSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred eeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 3455555 344 8999999999999999999654
No 244
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.37 E-value=0.009 Score=63.64 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.1
Q ss_pred EEEEecCCCCchhhhhhcchh
Q 003747 412 LVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igll 432 (798)
+.|.||+|+||||+++.++..
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999654
No 245
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.36 E-value=0.0058 Score=59.80 Aligned_cols=29 Identities=24% Similarity=0.208 Sum_probs=22.1
Q ss_pred EEEC-CCCeEEEEEecCCCCchhhhhhcch
Q 003747 403 IFIA-RKTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 403 isL~-~~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+++. ..+..++|+|+.||||||+.+.|+.
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3444 4567899999999999999999853
No 246
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.34 E-value=0.043 Score=61.76 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.5
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+-+.+.||.|+|||+|.|.|+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3488999999999999999964
No 247
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.30 E-value=0.013 Score=65.66 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=25.2
Q ss_pred eEEECCCCeEEEEEecCCCCchhhhhhcchhh
Q 003747 402 DIFIARKTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 402 disL~~~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
++++. .+++++|+||||+||||++..|+...
T Consensus 92 ~i~l~-~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 92 LPVLK-DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp CCCCC-SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccCC-CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44455 67899999999999999999987543
No 248
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.27 E-value=0.026 Score=60.27 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.5
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.-+.|.||.|+|||++.+.++.
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999999854
No 249
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.25 E-value=0.015 Score=59.94 Aligned_cols=49 Identities=20% Similarity=0.250 Sum_probs=30.8
Q ss_pred CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHHh
Q 003747 488 TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 537 (798)
Q Consensus 488 ~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~~ 537 (798)
..|+++|+|||+.--.+.....+....+..+...|.. ++.|+|-.++..
T Consensus 83 ~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgid-VitT~Nlqh~es 131 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGID-VYTTVNVQHLES 131 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCE-EEEEEEGGGBGG
T ss_pred cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCC-EEEEcccccccc
Confidence 3799999999986422223333333344446677877 888888654443
No 250
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.24 E-value=0.044 Score=59.30 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=58.4
Q ss_pred CCeEEEEEecCCCCchhhhhhcchhhhh---cccccccccccccccchhhHHhhhcCchh-hHhhhhhhhhHH-H-HHHH
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGLAVMM---AKSGLHILSSEYAKVPWFDSVFADIGDEQ-SLSQSLSTFSGH-L-KQIG 481 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igll~~~---aq~G~~vpa~~~~~i~~~~~i~~~ig~~~-si~~~lstfs~~-~-~ri~ 481 (798)
.| ++.|.||.|+|||||+-.++..... .....|+.. +.+.-+ .....+|..- ++.. ....+.+ + ..+.
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~-E~s~~~---~ra~~lGvd~d~llv-~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS-EFGITP---AYLRSMGVDPERVIH-TPVQSLEQLRIDMV 101 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES-SCCCCH---HHHHHTTCCGGGEEE-EECSBHHHHHHHHH
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec-cchhhH---HHHHHhCCCHHHeEE-EcCCCHHHHHHHHH
Confidence 45 6889999999999996655322211 111234443 222111 1234455431 1110 1111222 2 2233
Q ss_pred HHHH--hCCCCeEEEEecCCCCCC-------h--------HHHHHHHHH---HHHHHHhcCCcEEEEEecchh
Q 003747 482 NIIS--QSTSQSLVLLDEIGAGTN-------P--------LEGTALGMS---LLEAFAESGSLLTIATTHHGE 534 (798)
Q Consensus 482 ~il~--~a~~psLLLLDEP~sGlD-------p--------~eg~al~~a---ll~~L~~~g~t~VIitTHd~e 534 (798)
..+. .-..|++|++|=.++=.. + ...+.+... +...+.+.+++ +|+|-|-..
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~-vi~tNQV~k 173 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIP-CIAINHTYE 173 (333)
T ss_dssp HHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCE-EEEEEEC--
T ss_pred HHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCE-EEEECCeee
Confidence 3331 235799999998776531 1 111222222 23345667887 899999755
No 251
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.20 E-value=0.0061 Score=59.02 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.5
Q ss_pred CCeEEEEEecCCCCchhhhhhcc
Q 003747 408 KTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.|.+++|+||+||||||+.+.|+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999985
No 252
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.20 E-value=0.025 Score=61.45 Aligned_cols=23 Identities=22% Similarity=0.044 Sum_probs=19.3
Q ss_pred CeEEEE--EecCCCCchhhhhhcch
Q 003747 409 TRVLVI--TGPNTGGKTICLKTVGL 431 (798)
Q Consensus 409 g~iv~I--tGPNGsGKTTLLK~Igl 431 (798)
+..+.| +||.|+|||||++.++.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~ 74 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVK 74 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHH
Confidence 456777 99999999999998853
No 253
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.16 E-value=0.007 Score=61.92 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.5
Q ss_pred CCCeEEEEEecCCCCchhhhhhcch
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
..|.+++|.||+||||||+++.|+.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999999854
No 254
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.13 E-value=0.0075 Score=58.73 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=22.0
Q ss_pred CCCeEEEEEecCCCCchhhhhhcch
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
..+.+++|+|++||||||+.+.|+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3578899999999999999999864
No 255
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.07 E-value=0.037 Score=57.94 Aligned_cols=24 Identities=25% Similarity=0.158 Sum_probs=20.3
Q ss_pred CeEEEEEecCCCCchhhhhhcchh
Q 003747 409 TRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
+..+.|+||.|+||||+.+.++..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 445899999999999999988643
No 256
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.05 E-value=0.075 Score=59.61 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.5
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+-+.+.||.|+|||++.|.|+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3489999999999999999964
No 257
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.04 E-value=0.049 Score=57.90 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.7
Q ss_pred EEEEEecCCCCchhhhhhcch
Q 003747 411 VLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igl 431 (798)
.+.|+||.|+||||+.+.++.
T Consensus 57 ~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 388999999999999999853
No 258
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.04 E-value=0.0071 Score=57.41 Aligned_cols=20 Identities=15% Similarity=0.400 Sum_probs=18.6
Q ss_pred EEEEEecCCCCchhhhhhcc
Q 003747 411 VLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Ig 430 (798)
+++|+||.||||||+.+.|+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
No 259
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.98 E-value=0.055 Score=57.95 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.6
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+.+.|.||.|+|||++.+.++.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 4588999999999999999864
No 260
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.97 E-value=0.025 Score=64.48 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.2
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.-+.|.||.|+|||++.+.|+.
T Consensus 239 ~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHHH
Confidence 3488999999999999999853
No 261
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.87 E-value=0.082 Score=51.27 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=18.3
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
+.|+||.|+||||+++.++.
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999853
No 262
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.87 E-value=0.063 Score=69.37 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=22.6
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
..|+++.|.||+|+|||||+..++..
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHH
Confidence 46789999999999999999988643
No 263
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.86 E-value=0.031 Score=57.85 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.5
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
..+.|+||.|+||||+.+.++.
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4588999999999999999864
No 264
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.81 E-value=0.02 Score=65.41 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.2
Q ss_pred CeEEEEEecCCCCchhhhhhcch
Q 003747 409 TRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.+.+.|+||.|+||||+++.++.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 265
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.80 E-value=0.04 Score=60.37 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.0
Q ss_pred CeEEEEEecCCCCchhhhhhcch
Q 003747 409 TRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
..-+.|.||.|+|||++.+.|+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35589999999999999999853
No 266
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.75 E-value=0.077 Score=53.23 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=31.8
Q ss_pred CCCCeEEEEecCCC----CCChHHHHHHHHHHHHHHHhcCCcEEEEEecch
Q 003747 487 STSQSLVLLDEIGA----GTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 533 (798)
Q Consensus 487 a~~psLLLLDEP~s----GlDp~eg~al~~all~~L~~~g~t~VIitTHd~ 533 (798)
..+++++++|-.+. .-|+.....+...+.....+.+++ +++++|..
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~-vi~~~q~~ 182 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVT-TILTTEAP 182 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCE-EEEEECCC
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCC-eEEEEEEe
Confidence 45788999996532 124455556666677777778998 88888864
No 267
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.70 E-value=0.011 Score=60.21 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=21.7
Q ss_pred CCCeEEEEEecCCCCchhhhhhcch
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
..+.+++|+|+|||||||+.+.|+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999853
No 268
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.69 E-value=0.054 Score=58.86 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.2
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.-+.|.||.|+||||+.+.++.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3488999999999999999864
No 269
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.66 E-value=0.011 Score=65.61 Aligned_cols=56 Identities=4% Similarity=-0.066 Sum_probs=36.7
Q ss_pred CC--eEEEEecCCCCCChHHHHHHHHHHHHHH-HhcCCcEEEEEecchhH-Hhhhcccc-ceeee
Q 003747 489 SQ--SLVLLDEIGAGTNPLEGTALGMSLLEAF-AESGSLLTIATTHHGEL-KTLKYSND-FFENA 548 (798)
Q Consensus 489 ~p--sLLLLDEP~sGlDp~eg~al~~all~~L-~~~g~t~VIitTHd~el-~~~a~~~~-~l~ng 548 (798)
+| +++++|||+.+.|+...... ...++.+ ...|.| ++ +|+... ..+++++. .+.+|
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~-~~~l~~~~~~~g~t-i~--sh~~~~~~~l~~~i~~~L~~G 199 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKH-LEGLRKITSRGANT-LE--MKAKKEEQAIIEKVYQYLTET 199 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTCCSSCS-SS--HHHHHHHHHHHHHHHHHHHTT
T ss_pred CcchhhhhchhhhHHHHHHHHHHH-HHHHHHHHHhcCCc-cc--cccHHHHHHHHHHHHHHhccC
Confidence 67 88999999999998555444 3345555 444665 43 898644 45777765 55555
No 270
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.66 E-value=0.012 Score=58.76 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=21.9
Q ss_pred CCCeEEEEEecCCCCchhhhhhcch
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
..|.+++|+|++||||||+.+.|+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3568899999999999999999854
No 271
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.60 E-value=0.012 Score=64.10 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.8
Q ss_pred CCeEEEEEecCCCCchhhhhhcchh
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
++.+++|+|++|+|||||++.+.+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998653
No 272
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.59 E-value=0.011 Score=55.69 Aligned_cols=20 Identities=35% Similarity=0.502 Sum_probs=18.3
Q ss_pred eEEEEEecCCCCchhhhhhc
Q 003747 410 RVLVITGPNTGGKTICLKTV 429 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~I 429 (798)
.+++|+||.||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999987
No 273
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.57 E-value=0.011 Score=56.65 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=19.8
Q ss_pred CeEEEEEecCCCCchhhhhhcc
Q 003747 409 TRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
+.+++|+||.||||||+.+.|+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999985
No 274
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.54 E-value=0.17 Score=56.77 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=22.4
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
..|.+++|.|+.|+|||||.-.++..
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 57889999999999999998877543
No 275
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.53 E-value=0.031 Score=55.81 Aligned_cols=110 Identities=16% Similarity=0.155 Sum_probs=53.3
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhh-hccc-ccccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHH
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVM-MAKS-GLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 484 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~-~aq~-G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il 484 (798)
..|.+.+++||-|+||||.+--++.-.. -... ..+-|. ...+.+ ...+..++|..-.. ...... ..++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~-~d~r~~-~~~i~s~~g~~~~a-~~~~~~-------~~i~ 75 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPE-IDNRYS-KEDVVSHMGEKEQA-VAIKNS-------REIL 75 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC---------CEEECTTSCEEEC-EEESSS-------THHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec-cCccch-HHHHHhhcCCceee-EeeCCH-------HHHH
Confidence 4578999999999999987655422111 1111 111122 111111 11223333321000 000111 1233
Q ss_pred HhCC-CCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecch
Q 003747 485 SQST-SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 533 (798)
Q Consensus 485 ~~a~-~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~ 533 (798)
..+. +.++|++||--- +|+.. . ..++.+.+.|.. ||++.++.
T Consensus 76 ~~~~~~~dvViIDEaqf-l~~~~----v-~~l~~l~~~~~~-Vi~~Gl~~ 118 (191)
T 1xx6_A 76 KYFEEDTEVIAIDEVQF-FDDEI----V-EIVNKIAESGRR-VICAGLDM 118 (191)
T ss_dssp HHCCTTCSEEEECSGGG-SCTHH----H-HHHHHHHHTTCE-EEEEECSB
T ss_pred HHHhccCCEEEEECCCC-CCHHH----H-HHHHHHHhCCCE-EEEEeccc
Confidence 3333 479999999533 66522 2 245566667887 88888854
No 276
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.47 E-value=0.031 Score=52.48 Aligned_cols=21 Identities=10% Similarity=0.137 Sum_probs=18.6
Q ss_pred EEEEEecCCCCchhhhhhcch
Q 003747 411 VLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igl 431 (798)
-+.|+||.|+|||++.+.|..
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999853
No 277
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.43 E-value=0.014 Score=58.28 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.4
Q ss_pred CeEEEEEecCCCCchhhhhhcch
Q 003747 409 TRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+.+++|+|++||||||+.+.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 278
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.41 E-value=0.011 Score=58.90 Aligned_cols=20 Identities=45% Similarity=0.763 Sum_probs=18.1
Q ss_pred eEEEEEecCCCCchhhhhhc
Q 003747 410 RVLVITGPNTGGKTICLKTV 429 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~I 429 (798)
+.++|+||+|+|||||++.|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L 21 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 45899999999999999987
No 279
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.40 E-value=0.07 Score=59.39 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=18.6
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
+.+.||.|+|||++.|.|+.
T Consensus 185 vLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHH
T ss_pred eEEeCCCCCCHHHHHHHHHH
Confidence 88999999999999999964
No 280
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.39 E-value=0.013 Score=60.72 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.3
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.+++|+|||||||||+-+.|+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999999853
No 281
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.33 E-value=0.014 Score=56.38 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.8
Q ss_pred CeEEEEEecCCCCchhhhhhcc
Q 003747 409 TRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
+.+++|+||.||||||+.+.|+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999985
No 282
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.28 E-value=0.014 Score=57.42 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=19.6
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.+++|+||+|||||||++.|..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5789999999999999999853
No 283
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.27 E-value=0.017 Score=55.98 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.4
Q ss_pred CCeEEEEEecCCCCchhhhhhcc
Q 003747 408 KTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.+.+++|+|+.||||||+.+.|+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999985
No 284
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.25 E-value=0.067 Score=60.09 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.5
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+-+.+.||.|+|||++.|.|+.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHH
Confidence 4488999999999999999964
No 285
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.23 E-value=0.042 Score=58.82 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.3
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
..+.|+||.|+||||+++.++.
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999854
No 286
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.12 E-value=0.016 Score=55.04 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=18.9
Q ss_pred EEEEEecCCCCchhhhhhcch
Q 003747 411 VLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igl 431 (798)
.++|+|+||+|||||++.+.+
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999854
No 287
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.12 E-value=0.019 Score=56.14 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.8
Q ss_pred CCeEEEEEecCCCCchhhhhhcch
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
...+++|+|+.||||||+.+.|+.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999854
No 288
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.06 E-value=0.017 Score=55.10 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=19.5
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.+++|+||+||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999853
No 289
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.05 E-value=0.016 Score=59.80 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=21.5
Q ss_pred CCCeEEEEEecCCCCchhhhhhcch
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
..+.+++|+||+||||||+.+.|+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999853
No 290
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.05 E-value=0.032 Score=62.64 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.6
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+-+.|.||.|+|||++.+.++.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999864
No 291
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.04 E-value=0.014 Score=56.13 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=18.4
Q ss_pred EEEEEecCCCCchhhhhhcc
Q 003747 411 VLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Ig 430 (798)
.++|+||+||||||+.+.|+
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 48899999999999999985
No 292
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.02 E-value=0.012 Score=59.17 Aligned_cols=109 Identities=18% Similarity=0.240 Sum_probs=58.4
Q ss_pred CCCeEEEEEecCCCCch-hhhhhcchhhhhccccccc-ccccccccchhhHHhhhcCchhh--HhhhhhhhhHHHHHHHH
Q 003747 407 RKTRVLVITGPNTGGKT-ICLKTVGLAVMMAKSGLHI-LSSEYAKVPWFDSVFADIGDEQS--LSQSLSTFSGHLKQIGN 482 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKT-TLLK~Igll~~~aq~G~~v-pa~~~~~i~~~~~i~~~ig~~~s--i~~~lstfs~~~~ri~~ 482 (798)
..|++..|+||-||||| -||+.+.....-.+...++ |. -..+.+ +.+..++|..-. .......|-.
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~-~D~R~~--~~i~S~~g~~~~A~~~~~~~d~~~------- 87 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYS--SSFCTHDRNTMEALPACLLRDVAQ------- 87 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET-TCCCGG--GSCCHHHHHHSEEEEESSGGGGHH-------
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc-cCccch--hhhhhccCCcccceecCCHHHHHH-------
Confidence 45789999999999999 5777775443322222232 32 111211 222222221100 0011111111
Q ss_pred HHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhHH
Q 003747 483 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 536 (798)
Q Consensus 483 il~~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el~ 536 (798)
...+.++|++||-== + + + +. .+++.|.+.|.. ||++.++.++.
T Consensus 88 ---~~~~~DvIlIDEaQF-f-k-~---~v-e~~~~L~~~gk~-VI~~GL~~DF~ 130 (195)
T 1w4r_A 88 ---EALGVAVIGIDEGQF-F-P-D---IV-EFCEAMANAGKT-VIVAALDGTFQ 130 (195)
T ss_dssp ---HHHTCSEEEESSGGG-C-T-T---HH-HHHHHHHHTTCE-EEEEEESBCTT
T ss_pred ---hccCCCEEEEEchhh-h-H-H---HH-HHHHHHHHCCCe-EEEEecccccc
Confidence 123568999999722 2 2 2 22 355677788997 99999987774
No 293
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=93.98 E-value=0.06 Score=62.45 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=18.7
Q ss_pred eEEEEEecCCCCchhhhhhcc
Q 003747 410 RVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.-++|.|..||||||+|++|.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI 235 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAML 235 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHHHH
Confidence 348999999999999999974
No 294
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.90 E-value=0.021 Score=61.74 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.9
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
..+.+++|+|+||+|||||++.|+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 56788999999999999999998644
No 295
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.90 E-value=0.018 Score=56.14 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=18.9
Q ss_pred EEEEEecCCCCchhhhhhcch
Q 003747 411 VLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igl 431 (798)
+++|+|+.||||||+.+.|+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999853
No 296
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.89 E-value=0.021 Score=54.75 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.1
Q ss_pred CeEEEEEecCCCCchhhhhhcch
Q 003747 409 TRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+.-++|+|++|+|||||++.+.+
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45689999999999999999854
No 297
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.86 E-value=0.023 Score=60.02 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=20.9
Q ss_pred CCCeEEEEEecCCCCchhhhhhcc
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
..+.+++|+||+||||||+.+.|.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999984
No 298
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.84 E-value=0.018 Score=55.22 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=18.9
Q ss_pred EEEEEecCCCCchhhhhhcch
Q 003747 411 VLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igl 431 (798)
.++|+|++|+|||||++.+.+
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999854
No 299
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.81 E-value=0.019 Score=61.13 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=20.6
Q ss_pred CeEEEEEecCCCCchhhhhhcchh
Q 003747 409 TRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
+.+++|+|+||+|||||++.+.+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346999999999999999998543
No 300
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.78 E-value=0.14 Score=66.17 Aligned_cols=120 Identities=22% Similarity=0.205 Sum_probs=60.8
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhh-cccccccccccccccchhhHHhhhcCchh-hHh-hhhhhhhHHHHHHHHH
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMM-AKSGLHILSSEYAKVPWFDSVFADIGDEQ-SLS-QSLSTFSGHLKQIGNI 483 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~-aq~G~~vpa~~~~~i~~~~~i~~~ig~~~-si~-~~lstfs~~~~ri~~i 483 (798)
+.|+++.|.||.|+|||||.-.++..... .....|+.. +...-.. ....+|..- ++. ....+ ..+...+...
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~-E~s~~~~---~a~~lGvd~~~L~i~~~~~-~e~~l~~l~~ 455 (1706)
T 3cmw_A 381 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA-EHALDPI---YARKLGVDIDNLLCSQPDT-GEQALEICDA 455 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT-TSCCCHH---HHHHTTCCGGGCEEECCSS-HHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEc-cCchHHH---HHHHcCCCHHHeEEcCCCC-HHHHHHHHHH
Confidence 36789999999999999998877433221 112233333 2111111 122333211 110 00011 1222222222
Q ss_pred HHhCCCCeEEEEecCCCCCChH-------------HHH---HHHHHHHHHHHhcCCcEEEEEecc
Q 003747 484 ISQSTSQSLVLLDEIGAGTNPL-------------EGT---ALGMSLLEAFAESGSLLTIATTHH 532 (798)
Q Consensus 484 l~~a~~psLLLLDEP~sGlDp~-------------eg~---al~~all~~L~~~g~t~VIitTHd 532 (798)
+....++++|++|...+=.... ... .....+...+.+.+++ ||+++|-
T Consensus 456 lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~-VI~inQl 519 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL-LIFINQI 519 (1706)
T ss_dssp HHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCE-EEEEECE
T ss_pred HHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCE-EEEEeec
Confidence 2234689999999998755311 111 2222333334677998 8999885
No 301
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.73 E-value=0.12 Score=56.06 Aligned_cols=35 Identities=11% Similarity=0.193 Sum_probs=24.2
Q ss_pred ceeeeEEECCCCeEEEEEecCCCCchhhhhhcchhhh
Q 003747 398 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVM 434 (798)
Q Consensus 398 ~V~~disL~~~g~iv~ItGPNGsGKTTLLK~Igll~~ 434 (798)
.++.+++++-. .++|+|++|+||||||+.+.+..+
T Consensus 25 ~~l~~i~~~lp--~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 25 SALPTLWDSLP--AIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp CCC----CCCC--EEEEECBTTSSHHHHHHHHHTSCC
T ss_pred cccccccccCC--EEEEECCCCCcHHHHHHHHhCCCc
Confidence 35566766622 599999999999999999976443
No 302
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.71 E-value=0.11 Score=58.22 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.5
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+-+.+.||.|+|||.|.|.|+.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHH
Confidence 3489999999999999999964
No 303
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.67 E-value=0.012 Score=58.03 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=18.6
Q ss_pred EEEEEecCCCCchhhhhhcc
Q 003747 411 VLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Ig 430 (798)
+++|.||+||||||+++.|.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 68999999999999999985
No 304
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.65 E-value=0.13 Score=53.95 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.3
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
..+.|+||.|+||||+++.++.
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4488999999999999999853
No 305
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.65 E-value=0.014 Score=70.56 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=21.8
Q ss_pred CCeEEEEEecCCCCchhhhhhcchhh
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
.++.++|+||||+|||||.|+|+...
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHh
Confidence 44568999999999999999997543
No 306
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.60 E-value=0.14 Score=58.12 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=22.0
Q ss_pred CCCeEEEEEecCCCCchhhhhhcch
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
..|++++|.|+.|+|||||+-.++.
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHH
Confidence 5789999999999999999888754
No 307
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.52 E-value=0.021 Score=55.10 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=19.7
Q ss_pred CeEEEEEecCCCCchhhhhhcc
Q 003747 409 TRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
+.+++|+||.||||||+.+.|+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4678999999999999999985
No 308
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.50 E-value=0.022 Score=54.97 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=18.5
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|++|+|||||++.+..
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 88999999999999999864
No 309
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.49 E-value=0.17 Score=54.25 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.7
Q ss_pred CeEEEEEecCCCCchhhhhhcchh
Q 003747 409 TRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
+..+.|+||.|+||||+.+.++..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999998643
No 310
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.39 E-value=0.029 Score=54.43 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.5
Q ss_pred CCeEEEEEecCCCCchhhhhhcc
Q 003747 408 KTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.+.+++|+||.||||||+.+.|+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999985
No 311
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.36 E-value=0.028 Score=54.24 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=19.6
Q ss_pred CeEEEEEecCCCCchhhhhhcc
Q 003747 409 TRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
+.+++|+|+.||||||+.+.|+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999874
No 312
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.35 E-value=0.029 Score=54.95 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.9
Q ss_pred CCeEEEEEecCCCCchhhhhhcch
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.+.+++|+||.||||||+.+.|+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999853
No 313
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.25 E-value=0.03 Score=53.97 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=18.5
Q ss_pred EEEEEecCCCCchhhhhhcc
Q 003747 411 VLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Ig 430 (798)
+++|+||.||||||+.+.|+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
No 314
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.24 E-value=0.027 Score=55.17 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=19.2
Q ss_pred EEEEEecCCCCchhhhhhcch
Q 003747 411 VLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igl 431 (798)
+++|+|++||||||+.+.|+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999853
No 315
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.22 E-value=0.031 Score=54.75 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=20.4
Q ss_pred CeEEEEEecCCCCchhhhhhcch
Q 003747 409 TRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+.+++|+|+.||||||+.+.|+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999853
No 316
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.17 E-value=0.03 Score=54.12 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=19.6
Q ss_pred CeEEEEEecCCCCchhhhhhcc
Q 003747 409 TRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
...++|+||.||||||+.+.|+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999985
No 317
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.17 E-value=0.11 Score=53.00 Aligned_cols=112 Identities=13% Similarity=0.178 Sum_probs=53.8
Q ss_pred CCCeEEEEEecCCCCchh-hhhhcchhhhhcc-cccccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHH
Q 003747 407 RKTRVLVITGPNTGGKTI-CLKTVGLAVMMAK-SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 484 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTT-LLK~Igll~~~aq-~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il 484 (798)
..|.+.+|+||-|+|||| ||+.+-......+ ...+-|. ...+.+ ...+..++|..-... .+... ..+.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~-~D~R~~-~~~I~Sr~G~~~~a~-~v~~~-------~di~ 95 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPA-IDDRYH-KEKVVSHNGNAIEAI-NISKA-------SEIM 95 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-------------CBTTBCCEEE-EESSG-------GGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEec-cCCcch-hhhHHHhcCCceeeE-EeCCH-------HHHH
Confidence 568999999999999999 7777622211111 1112232 111111 123444444321100 00000 0001
Q ss_pred H-hCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhH
Q 003747 485 S-QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 535 (798)
Q Consensus 485 ~-~a~~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el 535 (798)
. ...+.++|++||-=- +|+ .+.. .+..+.+.|.. ||+.-=+.++
T Consensus 96 ~~i~~~~dvV~IDEaQF-f~~----~~v~-~l~~la~~gi~-Vi~~GLd~DF 140 (219)
T 3e2i_A 96 THDLTNVDVIGIDEVQF-FDD----EIVS-IVEKLSADGHR-VIVAGLDMDF 140 (219)
T ss_dssp GSCCTTCSEEEECCGGG-SCT----HHHH-HHHHHHHTTCE-EEEEEESBCT
T ss_pred HHHhcCCCEEEEechhc-CCH----HHHH-HHHHHHHCCCE-EEEeeccccc
Confidence 1 135789999999622 443 2333 44556678887 7777666655
No 318
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.17 E-value=0.028 Score=57.98 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=19.3
Q ss_pred eEEEEEecCCCCchhhhhhcc
Q 003747 410 RVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.+++|+||+||||||+.+.|+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999985
No 319
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.14 E-value=0.029 Score=59.84 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=24.4
Q ss_pred EEECCCCeEEEEEecCCCCchhhhhhcchh
Q 003747 403 IFIARKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 403 isL~~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
+++...+++++++||||+||||++..++..
T Consensus 92 i~~~~~~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 92 VIPDKIPYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp CSCSSSSEEEEEECSSCSSTTHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 444533789999999999999999998654
No 320
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.14 E-value=0.029 Score=54.48 Aligned_cols=21 Identities=14% Similarity=0.340 Sum_probs=18.9
Q ss_pred EEEEEecCCCCchhhhhhcch
Q 003747 411 VLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igl 431 (798)
+++|+||.||||||+.+.|.-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 321
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.12 E-value=0.029 Score=53.95 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=15.7
Q ss_pred CeEEEEEecCCCCchhhhhhcc
Q 003747 409 TRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
+.+++|+|+.||||||+.+.|+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999984
No 322
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.05 E-value=0.1 Score=58.68 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=19.0
Q ss_pred EEEEEecCCCCchhhhhhcch
Q 003747 411 VLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igl 431 (798)
.++|.||.|+||||+.+.|+.
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999999864
No 323
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.03 E-value=0.035 Score=54.66 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.1
Q ss_pred CCeEEEEEecCCCCchhhhhhcch
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.+.+++|+|+.||||||+.+.|+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999853
No 324
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.93 E-value=0.037 Score=54.51 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=20.7
Q ss_pred CCeEEEEEecCCCCchhhhhhcc
Q 003747 408 KTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.+.+++|+|+.||||||+.+.|+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999985
No 325
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.85 E-value=0.13 Score=58.09 Aligned_cols=22 Identities=32% Similarity=0.691 Sum_probs=19.5
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+-+.+.||.|+|||+|.|.|+.
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHh
Confidence 3488999999999999999964
No 326
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.83 E-value=0.042 Score=56.51 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=18.6
Q ss_pred EEEEEecCCCCchhhhhhcch
Q 003747 411 VLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igl 431 (798)
-++|+|+.|+|||||++.|.+
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 389999999999999999853
No 327
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.80 E-value=0.08 Score=53.95 Aligned_cols=112 Identities=15% Similarity=0.142 Sum_probs=52.4
Q ss_pred CCCeEEEEEecCCCCchhhhhhcchhhhhc-cccc-ccccccccccchhhHHhhhcCchhhHhhhhhhhhHHHHHHHHHH
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGLAVMMA-KSGL-HILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 484 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igll~~~a-q~G~-~vpa~~~~~i~~~~~i~~~ig~~~si~~~lstfs~~~~ri~~il 484 (798)
..|.+.+++||=|+||||.|--++...... +..+ +-|. ...+.+ -..+..++|..-.. ...... ..++
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~-~d~R~g-e~~i~s~~g~~~~a-~~~~~~-------~~~~ 95 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC-IDNRYS-EEDVVSHNGLKVKA-VPVSAS-------KDIF 95 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-------------------CCE-EECSSG-------GGGG
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec-cCCcch-HHHHHhhcCCeeEE-eecCCH-------HHHH
Confidence 568899999999999999765543221111 1111 1122 111111 01233333321000 000000 0222
Q ss_pred HhCC-CCeEEEEecCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecchhH
Q 003747 485 SQST-SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 535 (798)
Q Consensus 485 ~~a~-~psLLLLDEP~sGlDp~eg~al~~all~~L~~~g~t~VIitTHd~el 535 (798)
..+. +.++|++||--- +|+. +. .+++.+...|.. ||++-++.++
T Consensus 96 ~~~~~~~dvViIDEaQF-~~~~----~V-~~l~~l~~~~~~-Vi~~Gl~~DF 140 (214)
T 2j9r_A 96 KHITEEMDVIAIDEVQF-FDGD----IV-EVVQVLANRGYR-VIVAGLDQDF 140 (214)
T ss_dssp GGCCSSCCEEEECCGGG-SCTT----HH-HHHHHHHHTTCE-EEEEECSBCT
T ss_pred HHHhcCCCEEEEECccc-CCHH----HH-HHHHHHhhCCCE-EEEEeccccc
Confidence 2233 479999999844 5552 22 345566667887 8999885444
No 328
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.73 E-value=0.23 Score=49.89 Aligned_cols=60 Identities=15% Similarity=0.062 Sum_probs=34.7
Q ss_pred HHHHHhC--CCCeEEEEecCCCC--CChHHHHHHHHHHHHHHHhc--CCcEEEEEecc--hhHHhhhccccce
Q 003747 481 GNIISQS--TSQSLVLLDEIGAG--TNPLEGTALGMSLLEAFAES--GSLLTIATTHH--GELKTLKYSNDFF 545 (798)
Q Consensus 481 ~~il~~a--~~psLLLLDEP~sG--lDp~eg~al~~all~~L~~~--g~t~VIitTHd--~el~~~a~~~~~l 545 (798)
..+...+ ...+||||||.+.. ++...... +++.+..+ ... ||+|+++ .++..+||.+-.+
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~e----v~~~l~~Rp~~~~-vIlTGr~ap~~l~e~AD~VTem 177 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYLPLEE----VISALNARPGHQT-VIITGRGCHRDILDLADTVSEL 177 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHH----HHHHHHTSCTTCE-EEEECSSCCHHHHHHCSEEEEC
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCCCHHH----HHHHHHhCcCCCE-EEEECCCCcHHHHHhCcceeee
Confidence 3333444 66899999999653 12112222 33444433 455 8999997 4666777755444
No 329
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.73 E-value=0.2 Score=65.76 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.3
Q ss_pred CCeEEEEEecCCCCchhhhhhcch
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.++.+.|.||.|+|||||...++.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ 1449 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIA 1449 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999988853
No 330
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.73 E-value=0.19 Score=52.52 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=18.4
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
+.|.||.|+||||+.+.++.
T Consensus 49 ~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 88999999999999999854
No 331
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.70 E-value=0.039 Score=53.72 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=19.2
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcch
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+..++++. +.. -++|+|++|+|||||++.+..
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 45677777 444 489999999999999998853
No 332
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.69 E-value=0.09 Score=63.80 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.4
Q ss_pred eEEEEEecCCCCchhhhhhcchhh
Q 003747 410 RVLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
..+.|+||+|+|||++.+.|+...
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999996543
No 333
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.68 E-value=0.084 Score=56.09 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=18.8
Q ss_pred EEEEEecCCCCchhhhhhcch
Q 003747 411 VLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igl 431 (798)
-+.|+||.|+|||++.+.|..
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCchHHHHHHHHHH
Confidence 488999999999999999854
No 334
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.64 E-value=0.034 Score=59.62 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.2
Q ss_pred EEEEecCCCCchhhhhhcchh
Q 003747 412 LVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igll 432 (798)
++++||+|+||||+++.++..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999654
No 335
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.57 E-value=0.13 Score=54.31 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=18.8
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.++.+.||.|+||||+.+.++.
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHHHH
Confidence 4677888899999999999853
No 336
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.50 E-value=0.042 Score=58.21 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=17.7
Q ss_pred CCeEEEEEecCCCCchhhhhhcch
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
...+++|+||.||||||+.+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999853
No 337
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.48 E-value=0.046 Score=52.59 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=19.2
Q ss_pred eEEEEEecCCCCchhhhhhcc
Q 003747 410 RVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.+++|+|+.||||||+.+.|+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999884
No 338
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.46 E-value=0.044 Score=53.25 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=19.8
Q ss_pred CeEEEEEecCCCCchhhhhhcc
Q 003747 409 TRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
+.+++|+||.||||||+.+.|+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999985
No 339
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.40 E-value=0.044 Score=53.83 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=18.8
Q ss_pred eEEEEEecCCCCchhhhhhcc
Q 003747 410 RVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.+++|+|++|||||||+..|.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~ 25 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWV 25 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999998874
No 340
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.23 E-value=0.24 Score=64.89 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.7
Q ss_pred CCCeEEEEEecCCCCchhhhhhcch
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+.|+++.|.||.|+|||||.-.++.
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLqia~ 405 (2050)
T 3cmu_A 381 PMGRIVEIYGPESSGKTTLTLQVIA 405 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4678999999999999999888753
No 341
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.15 E-value=0.23 Score=59.86 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.4
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+-+.+.||.|+|||+|.|.|+.
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~ 260 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4488999999999999999863
No 342
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.14 E-value=0.039 Score=60.51 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=20.8
Q ss_pred CCeEEEEEecCCCCchhhhhhcchh
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
.+..++|+||+||||||+++.+...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 3455899999999999999998543
No 343
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.08 E-value=0.042 Score=52.23 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=18.9
Q ss_pred eEEEEEecCCCCchhhhhhcc
Q 003747 410 RVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.+++|+|+.||||||+.+.|+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999985
No 344
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.08 E-value=0.049 Score=52.58 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=18.5
Q ss_pred EEEEEecCCCCchhhhhhcc
Q 003747 411 VLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Ig 430 (798)
+++|+|+.||||||+.+.|+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLY 21 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999985
No 345
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.03 E-value=0.058 Score=52.94 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.1
Q ss_pred CCeEEEEEecCCCCchhhhhhcc
Q 003747 408 KTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
...+++|+|+.||||||+.+.|+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44679999999999999999874
No 346
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.80 E-value=0.058 Score=54.27 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.7
Q ss_pred CeEEEEEecCCCCchhhhhhcc
Q 003747 409 TRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
..+++|+||.||||||+.+.|+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999985
No 347
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.80 E-value=0.054 Score=53.70 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=18.0
Q ss_pred EEEEEecCCCCchhhhhhcc
Q 003747 411 VLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Ig 430 (798)
.++|+||.||||||+.+.|+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999984
No 348
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.75 E-value=0.23 Score=52.19 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=19.2
Q ss_pred eEEEEEecCCCCchhhhhhcc
Q 003747 410 RVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.+++|+||-|+|||||++.+.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHH
Confidence 679999999999999999874
No 349
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.73 E-value=0.056 Score=54.08 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.5
Q ss_pred CeEEEEEecCCCCchhhhhhcc
Q 003747 409 TRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
..+++|+||.||||||+.+.|+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999999985
No 350
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.62 E-value=0.062 Score=53.66 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.2
Q ss_pred CCeEEEEEecCCCCchhhhhhcc
Q 003747 408 KTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.+.+++|+||.||||||+.+.|+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999985
No 351
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.59 E-value=0.059 Score=51.03 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=18.3
Q ss_pred EEEEEecCCCCchhhhhhcc
Q 003747 411 VLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Ig 430 (798)
.++|+|+.||||||+.+.|+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999985
No 352
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.59 E-value=0.065 Score=55.43 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.2
Q ss_pred CeEEEEEecCCCCchhhhhhcch
Q 003747 409 TRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+.+++|+|+.||||||+.+.|+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999853
No 353
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=91.48 E-value=0.38 Score=55.13 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.5
Q ss_pred CCeEEEEEecCCCCchhhhhhcc
Q 003747 408 KTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
..++++|+|+-|.|||||.+.+.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~ 173 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQAL 173 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHH
Confidence 35789999999999999999876
No 354
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.40 E-value=0.055 Score=52.22 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=18.8
Q ss_pred eEEEEEecCCCCchhhhhhcc
Q 003747 410 RVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.+++|+|+.||||||+-+.|+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999985
No 355
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.36 E-value=0.064 Score=53.24 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=18.0
Q ss_pred EEEEEecCCCCchhhhhhcc
Q 003747 411 VLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Ig 430 (798)
.++|+||.||||||+.+.|+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999984
No 356
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.23 E-value=0.034 Score=54.61 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=24.3
Q ss_pred eeeeEEEC-CCCeEEEEEecCCCCchhhhhhcch
Q 003747 399 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 399 V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
+..++++. +..+ ++|+|++|+|||||++.+..
T Consensus 15 ~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 44555555 4444 88999999999999999853
No 357
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.16 E-value=0.078 Score=52.07 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.2
Q ss_pred CCeEEEEEecCCCCchhhhhhcc
Q 003747 408 KTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.+.+++|+||.||||||+.+.|+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44579999999999999999985
No 358
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=91.14 E-value=0.066 Score=58.63 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=20.6
Q ss_pred CeEEEEEecCCCCchhhhhhcchh
Q 003747 409 TRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
-.+++|+|+||+|||||++.+.+.
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC
Confidence 345899999999999999998654
No 359
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.05 E-value=0.069 Score=55.42 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.3
Q ss_pred EEEEEecCCCCchhhhhhcchh
Q 003747 411 VLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igll 432 (798)
.++|+|++|+|||||++.+.+.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998543
No 360
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.02 E-value=0.072 Score=53.68 Aligned_cols=20 Identities=35% Similarity=0.411 Sum_probs=18.3
Q ss_pred EEEEEecCCCCchhhhhhcc
Q 003747 411 VLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Ig 430 (798)
+++|+||.||||||+.+.|+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999985
No 361
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.99 E-value=0.073 Score=50.55 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=18.3
Q ss_pred EEEEEecCCCCchhhhhhcc
Q 003747 411 VLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Ig 430 (798)
-++|+|++|+|||||++.+.
T Consensus 20 ~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999999984
No 362
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.94 E-value=0.069 Score=58.49 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=19.0
Q ss_pred EEEEecCCCCchhhhhhcchh
Q 003747 412 LVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igll 432 (798)
++|+||+|+||||+.++|+..
T Consensus 27 i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 889999999999999998643
No 363
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=90.88 E-value=0.069 Score=59.68 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=19.5
Q ss_pred EEEEEecCCCCchhhhhhcchh
Q 003747 411 VLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igll 432 (798)
-++|+|+||+|||||++.+.+.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998543
No 364
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.64 E-value=0.082 Score=54.24 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=19.5
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.+++|+||.||||||+.+.|+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998853
No 365
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.63 E-value=0.083 Score=52.58 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=20.8
Q ss_pred CCeEEEEEecCCCCchhhhhhcch
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
...+++|+|+.||||||+.+.++.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999853
No 366
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.57 E-value=0.085 Score=55.44 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=20.0
Q ss_pred CeEEEEEecCCCCchhhhhhcc
Q 003747 409 TRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
..+++|+|+.||||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999986
No 367
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.51 E-value=0.35 Score=49.42 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.6
Q ss_pred CCCeEEEEEecCCCCchhhhhhcc
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
..|.+++|.|+.||||||+.+.|.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999999985
No 368
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.37 E-value=0.091 Score=49.96 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=19.2
Q ss_pred eEEEEEecCCCCchhhhhhcc
Q 003747 410 RVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.+++|+|+.||||||+-+.|+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999985
No 369
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.37 E-value=0.093 Score=54.87 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=19.4
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.+++|+||+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999853
No 370
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.30 E-value=0.092 Score=50.50 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=18.7
Q ss_pred EEEEEecCCCCchhhhhhcch
Q 003747 411 VLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igl 431 (798)
-++|+|++|+|||||++.+..
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999999853
No 371
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.13 E-value=0.094 Score=50.44 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=18.8
Q ss_pred EEEEEecCCCCchhhhhhcch
Q 003747 411 VLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igl 431 (798)
.++|+|+.|+|||||++.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999854
No 372
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=90.05 E-value=0.27 Score=52.99 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=20.3
Q ss_pred CCeEEEEEecCCCCchhhhhhcch
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.+..+.|.||.|.|||++.+.++.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999853
No 373
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.05 E-value=0.079 Score=57.85 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=17.6
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+||+|||||+++|.
T Consensus 40 I~vvG~~g~GKSTLln~L~ 58 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLF 58 (361)
T ss_dssp EEECCCTTSCHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 6899999999999999974
No 374
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.88 E-value=0.12 Score=52.88 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=19.7
Q ss_pred CeEEEEEecCCCCchhhhhhcc
Q 003747 409 TRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
..+++|+||.||||||+.+.|+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999985
No 375
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.80 E-value=0.11 Score=51.66 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=17.7
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+||.||||||+.+.|+
T Consensus 3 I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999985
No 376
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.75 E-value=0.11 Score=47.79 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++++|+.|+|||||++.+..
T Consensus 6 i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999853
No 377
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=89.72 E-value=1.6 Score=38.13 Aligned_cols=55 Identities=7% Similarity=-0.002 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003747 597 ASAEINEVIIEMERFKTQFLEHVHEAR------HFLMLSRNLHKNLLRTRRKILEHCASQR 651 (798)
Q Consensus 597 ~~~~le~~I~~Le~~~~~~e~~~~~~~------~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 651 (798)
+...++..|+.||.++.+++..+.+.. ..+..+...+.+++.+++.+.++|+++.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788889999999999999887643 3556666677788888888888887654
No 378
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.67 E-value=0.11 Score=48.27 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 8 i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 78999999999999999853
No 379
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.55 E-value=0.13 Score=51.96 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.7
Q ss_pred CCeEEEEEecCCCCchhhhhhcc
Q 003747 408 KTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.|.+++|.||.||||||+++.|.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHH
Confidence 46889999999999999999984
No 380
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=89.54 E-value=0.086 Score=58.50 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=25.3
Q ss_pred eEEEC-CCCeEEEEEecCCCCchhhhhhcchh
Q 003747 402 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 402 disL~-~~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
|+.+. ..|..++|+||+|+|||||++.|+..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 55555 55677999999999999999998654
No 381
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.47 E-value=0.12 Score=47.83 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999853
No 382
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.21 E-value=0.21 Score=50.52 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=25.3
Q ss_pred ceeeeEEECCCCeEEEEEecCCCCchhhhhhcc
Q 003747 398 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 398 ~V~~disL~~~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.......+.-.+..++|+||.|+|||||...++
T Consensus 23 ~~lHa~~v~~~g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 23 RSMHGVLVDIYGLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp CCEESEEEEETTEEEEEECCCTTTTHHHHHHHH
T ss_pred eeeeEEEEEECCEEEEEECCCCCCHHHHHHHHH
Confidence 344555555567889999999999999987763
No 383
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.18 E-value=0.13 Score=47.58 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=17.6
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 6 i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999874
No 384
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.15 E-value=0.13 Score=47.62 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 7 i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999853
No 385
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.14 E-value=0.13 Score=47.84 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=17.7
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 5 i~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEESTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 7899999999999999884
No 386
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.14 E-value=0.13 Score=47.82 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=18.0
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999998843
No 387
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.05 E-value=0.13 Score=47.86 Aligned_cols=20 Identities=15% Similarity=0.116 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 9 i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 78999999999999999853
No 388
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.03 E-value=0.14 Score=52.45 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=18.0
Q ss_pred CCeEEEEEecCCCCchhhhhhcc
Q 003747 408 KTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.|.+++|.||.||||||+.+.|.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999999985
No 389
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=89.02 E-value=0.13 Score=48.43 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=18.0
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 11 i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 88999999999999998743
No 390
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.97 E-value=10 Score=33.72 Aligned_cols=71 Identities=11% Similarity=0.072 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003747 598 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQ 675 (798)
Q Consensus 598 ~~~le~~I~~Le~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~l~~~~~~ 675 (798)
...+...|..|+.+....+.++..+...+.+-.....+.+.....+..+ ++.+-..--.+|+.++..++++
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~E-------lEeLTasLFeEAN~MVa~ar~e 77 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKE-------VEDLTASLFDEANNMVADARKE 77 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666665555555555554444444444455544444443 3444444456677888776543
No 391
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.97 E-value=0.13 Score=47.79 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=17.7
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999884
No 392
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=88.96 E-value=0.14 Score=47.70 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 78999999999999999853
No 393
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=88.94 E-value=0.54 Score=53.86 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.3
Q ss_pred CCeEEEEEecCCCCchhhhhhcc
Q 003747 408 KTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
+.++++|+||-|.|||||.+.+.
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~ 168 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAV 168 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHH
Confidence 45789999999999999998874
No 394
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.94 E-value=0.15 Score=56.75 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.2
Q ss_pred CCCeEEEEEecCCCCchhhhhhcc
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
....+++|+||+||||||+.+.++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456889999999999999999974
No 395
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.88 E-value=0.13 Score=48.30 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=18.2
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 12 i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEECCTTSCHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999853
No 396
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.83 E-value=0.15 Score=51.05 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.5
Q ss_pred CeEEEEEecCCCCchhhhhhcc
Q 003747 409 TRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
+..++|+|+.||||||+.+.|+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999985
No 397
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.81 E-value=0.14 Score=47.80 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=17.7
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999884
No 398
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.79 E-value=0.14 Score=47.51 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=17.7
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999984
No 399
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.79 E-value=0.16 Score=51.49 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=20.0
Q ss_pred CeEEEEEecCCCCchhhhhhcc
Q 003747 409 TRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
+.+++|.|+.||||||+.+.|+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~ 23 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLT 23 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 5689999999999999999985
No 400
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.74 E-value=0.16 Score=52.37 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.8
Q ss_pred CCeEEEEEecCCCCchhhhhhcc
Q 003747 408 KTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.|.+++|.||.||||||+++.|.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~ 48 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVV 48 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999999985
No 401
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.71 E-value=0.14 Score=49.10 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=18.7
Q ss_pred EEEEEecCCCCchhhhhhcch
Q 003747 411 VLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igl 431 (798)
-++|+|+.|+|||||++.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999853
No 402
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=88.71 E-value=0.14 Score=48.16 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=17.7
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 10 i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999984
No 403
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=88.71 E-value=0.14 Score=48.79 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=18.2
Q ss_pred EEEEEecCCCCchhhhhhcc
Q 003747 411 VLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Ig 430 (798)
-++|+|+.|+|||||++.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 38899999999999999884
No 404
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.70 E-value=0.14 Score=47.76 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=17.6
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999984
No 405
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.61 E-value=0.15 Score=55.50 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.3
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.+++|+||+||||||+.+.|+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4799999999999999988753
No 406
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.60 E-value=0.14 Score=47.88 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 7 i~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHC
T ss_pred EEEECCCCccHHHHHHHHhc
Confidence 88999999999999998843
No 407
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=88.54 E-value=0.15 Score=48.53 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=17.6
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999874
No 408
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.53 E-value=0.14 Score=48.12 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=19.2
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
..++|+|+.|+|||||++.+..
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4589999999999999999843
No 409
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.47 E-value=0.16 Score=51.33 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.2
Q ss_pred CeEEEEEecCCCCchhhhhhcc
Q 003747 409 TRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
|.+++|.|+.||||||.++.|.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~ 24 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVV 24 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 6789999999999999999984
No 410
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=88.45 E-value=0.63 Score=37.21 Aligned_cols=45 Identities=27% Similarity=0.327 Sum_probs=34.0
Q ss_pred CCCCCCEEEEccC---CceEEEEEecCCCceEEEEEce----eEEEeecCCe
Q 003747 751 LPNVGDLVHVSSF---GKKGTVIKVEPSKEEIVVQVGN----MKWIMKFTDI 795 (798)
Q Consensus 751 ~~~~Gd~V~v~~~---~~~G~V~~i~~~~~~~~Vq~G~----~k~~v~~~~l 795 (798)
.+++||.|+|.+. |..|+|.+++.+++.+.|.+-. ..+.++.+.+
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~v~~~Gr~t~v~l~~~~v 55 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQV 55 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGGE
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEeCCCEEEEEECHHHE
Confidence 4789999999987 6889999998877788777643 3455555444
No 411
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.43 E-value=0.15 Score=47.55 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=18.2
Q ss_pred EEEEEecCCCCchhhhhhcc
Q 003747 411 VLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Ig 430 (798)
-++|+|+.|+|||||++.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~ 28 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 38899999999999999984
No 412
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.41 E-value=0.19 Score=51.73 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=20.9
Q ss_pred CCCeEEEEEecCCCCchhhhhhcc
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
..+.+++|.|+-||||||+.+.|+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999985
No 413
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.30 E-value=0.16 Score=47.75 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 12 i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 12 LVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 88999999999999998853
No 414
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=88.30 E-value=0.8 Score=48.96 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=19.8
Q ss_pred eEEEEEecCCCCchhhhhhcchh
Q 003747 410 RVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igll 432 (798)
..+.+.||.|.||||+.+.++..
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHHHHH
Confidence 45899999999999999998643
No 415
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.15 E-value=0.26 Score=58.75 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.1
Q ss_pred CeEEEEEecCCCCchhhhhhcchh
Q 003747 409 TRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
+.-++|+||.|+||||+.+.++..
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 344789999999999999998643
No 416
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.12 E-value=0.14 Score=50.68 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.9
Q ss_pred eEEEEEecCCCCchhhhhhcc
Q 003747 410 RVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.+++|+|+.||||||+.+.|+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~ 24 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVA 24 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999885
No 417
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=87.98 E-value=0.17 Score=47.42 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=17.6
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 17 i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999884
No 418
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.97 E-value=0.18 Score=54.40 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.5
Q ss_pred CeEEEEEecCCCCchhhhhhcc
Q 003747 409 TRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
..+++|+||+|+|||||.+.|+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHH
Confidence 3578999999999999998885
No 419
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=87.85 E-value=0.17 Score=48.00 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=17.8
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 7 i~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999985
No 420
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=87.83 E-value=0.28 Score=48.63 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=24.3
Q ss_pred ceeeeEEECCCCeEEEEEecCCCCchhhhhhc
Q 003747 398 PVPIDIFIARKTRVLVITGPNTGGKTICLKTV 429 (798)
Q Consensus 398 ~V~~disL~~~g~iv~ItGPNGsGKTTLLK~I 429 (798)
.......+.-.|.-++|+||+|+||||+.-.+
T Consensus 5 ~~lHas~v~v~G~gvli~G~SGaGKStlal~L 36 (181)
T 3tqf_A 5 QTWHANFLVIDKMGVLITGEANIGKSELSLAL 36 (181)
T ss_dssp EEEESEEEEETTEEEEEEESSSSSHHHHHHHH
T ss_pred EEEEEEEEEECCEEEEEEcCCCCCHHHHHHHH
Confidence 34444455556788999999999999987665
No 421
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.82 E-value=0.18 Score=54.50 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=18.9
Q ss_pred eEEEEEecCCCCchhhhhhcc
Q 003747 410 RVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.+++|+||+||||||+-+.|+
T Consensus 6 ~~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999998875
No 422
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=87.80 E-value=0.17 Score=46.85 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=18.0
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 9 i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999853
No 423
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=87.73 E-value=0.64 Score=52.68 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=20.8
Q ss_pred CCeEEEEEecCCCCchhhhhhcchh
Q 003747 408 KTRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
.|..++|+||+|.|||||++.|...
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhh
Confidence 3456999999999999999988543
No 424
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.72 E-value=0.2 Score=50.60 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.2
Q ss_pred CCeEEEEEecCCCCchhhhhhcc
Q 003747 408 KTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.+..++|+|+.||||||+.+.|+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999985
No 425
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=87.65 E-value=0.18 Score=47.67 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=18.2
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 21 i~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 88999999999999999853
No 426
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=87.62 E-value=0.18 Score=47.91 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 14 i~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999853
No 427
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=87.61 E-value=0.19 Score=47.81 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=17.7
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 13 i~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999874
No 428
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=87.58 E-value=0.22 Score=50.67 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.0
Q ss_pred CCCeEEEEEecCCCCchhhhhhcc
Q 003747 407 RKTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 407 ~~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
...++++|+||.||||||.-+.|+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHH
Confidence 456889999999999999998885
No 429
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=87.55 E-value=0.18 Score=46.68 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999853
No 430
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=87.46 E-value=0.18 Score=48.47 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 28 i~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 88999999999999998853
No 431
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.44 E-value=0.68 Score=55.10 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.5
Q ss_pred EEEEEecCCCCchhhhhhcchh
Q 003747 411 VLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igll 432 (798)
.+.|+||.|+|||++.+.++..
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999998644
No 432
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=87.39 E-value=0.19 Score=47.13 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=18.2
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 18 i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 88999999999999999853
No 433
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=87.38 E-value=0.19 Score=48.59 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=17.2
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 23 i~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 8899999999999998763
No 434
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=87.35 E-value=0.18 Score=52.89 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=19.0
Q ss_pred EEEEEecCCCCchhhhhhcch
Q 003747 411 VLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igl 431 (798)
.++|+|++|+|||||++.+.+
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 489999999999999999854
No 435
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=87.33 E-value=0.2 Score=49.00 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=17.8
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 26 i~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 26 VMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEECSTTSSHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8999999999999999984
No 436
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=87.30 E-value=0.18 Score=55.87 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=20.1
Q ss_pred CeEEEEEecCCCCchhhhhhcchh
Q 003747 409 TRVLVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Igll 432 (798)
+..++|+|+||+|||||++.|.+.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 345999999999999999999643
No 437
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=87.26 E-value=0.2 Score=47.97 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 10 i~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999998853
No 438
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.20 E-value=0.19 Score=49.38 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=18.6
Q ss_pred EEEEEecCCCCchhhhhhcch
Q 003747 411 VLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igl 431 (798)
-++|+|+.|+|||||++.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999853
No 439
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.15 E-value=0.2 Score=47.13 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=18.2
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 9 i~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 78999999999999999853
No 440
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.10 E-value=0.22 Score=53.64 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.5
Q ss_pred CeEEEEEecCCCCchhhhhhcc
Q 003747 409 TRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
..+++|+||+|||||||...|+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La 31 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELR 31 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHH
Confidence 3578999999999999999885
No 441
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=87.00 E-value=0.2 Score=47.71 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=18.2
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 10 i~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 88999999999999999854
No 442
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=86.99 E-value=0.2 Score=47.73 Aligned_cols=19 Identities=42% Similarity=0.527 Sum_probs=17.4
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 17 i~vvG~~~~GKssL~~~l~ 35 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIY 35 (198)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999998774
No 443
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=86.98 E-value=0.21 Score=47.46 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=17.7
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 21 i~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999985
No 444
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=86.96 E-value=0.21 Score=47.86 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=18.2
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 24 i~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 88999999999999999853
No 445
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=86.93 E-value=0.21 Score=48.34 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=17.7
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 17 i~v~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFM 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8899999999999999984
No 446
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=86.88 E-value=0.25 Score=50.17 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.9
Q ss_pred CCeEEEEEecCCCCchhhhhhcc
Q 003747 408 KTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.|.+++|.|+.||||||..+.|.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~ 26 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILY 26 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46889999999999999999985
No 447
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=86.83 E-value=0.21 Score=47.10 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=18.0
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 15 i~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 88999999999999998853
No 448
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.77 E-value=0.66 Score=55.30 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEEecCCCCchhhhhhcchhh
Q 003747 411 VLVITGPNTGGKTICLKTVGLAV 433 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igll~ 433 (798)
.+.|+||.|+|||++.+.|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999996543
No 449
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.76 E-value=0.22 Score=46.98 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 13 i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 88999999999999999843
No 450
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=86.74 E-value=0.22 Score=47.12 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=17.7
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 9 i~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 9 IAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 8899999999999999884
No 451
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=86.56 E-value=0.25 Score=48.70 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=18.8
Q ss_pred eEEEEEecCCCCchhhhhhcc
Q 003747 410 RVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Ig 430 (798)
..++|+|+.|+|||||+..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~ 51 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTI 51 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 468999999999999998874
No 452
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=86.47 E-value=0.23 Score=48.19 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 11 i~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 11 VIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 88999999999999998843
No 453
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=86.46 E-value=0.23 Score=46.98 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=17.6
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 8 i~~~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999874
No 454
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.40 E-value=0.24 Score=47.62 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 11 i~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 11 VVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHc
Confidence 88999999999999999843
No 455
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=86.40 E-value=0.23 Score=47.59 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=17.8
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 19 i~v~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFA 37 (196)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 8899999999999999985
No 456
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=86.36 E-value=0.25 Score=47.48 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=18.7
Q ss_pred EEEEecCCCCchhhhhhcchh
Q 003747 412 LVITGPNTGGKTICLKTVGLA 432 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igll 432 (798)
++|+|+.|+|||||++.+...
T Consensus 24 i~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 24 VLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEECTTSSHHHHHHHTSCG
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 889999999999999998543
No 457
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=86.33 E-value=0.31 Score=54.59 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.5
Q ss_pred eEEEEEecCCCCchhhhhhcch
Q 003747 410 RVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Igl 431 (798)
..++|+|+.|+|||||++.+.+
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEE
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3599999999999999999854
No 458
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=86.30 E-value=0.23 Score=47.29 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=18.6
Q ss_pred EEEEEecCCCCchhhhhhcch
Q 003747 411 VLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igl 431 (798)
-++|+|+.|+|||||++.+..
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999853
No 459
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=86.14 E-value=0.25 Score=47.72 Aligned_cols=20 Identities=15% Similarity=0.131 Sum_probs=18.2
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 26 i~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 88999999999999999853
No 460
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=86.02 E-value=0.25 Score=48.17 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=17.7
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 28 i~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 8899999999999999984
No 461
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=85.96 E-value=3.2 Score=34.36 Aligned_cols=47 Identities=26% Similarity=0.185 Sum_probs=40.1
Q ss_pred CCCCCCEEEEc-cCC--ceEEEEEecCCCceEEEEEc-eeEEEeecCCeee
Q 003747 751 LPNVGDLVHVS-SFG--KKGTVIKVEPSKEEIVVQVG-NMKWIMKFTDIVT 797 (798)
Q Consensus 751 ~~~~Gd~V~v~-~~~--~~G~V~~i~~~~~~~~Vq~G-~~k~~v~~~~l~~ 797 (798)
.+++||.|... +-| -.|+|++|...++..+|++. +.+.+|-.+||..
T Consensus 13 ~f~vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~kdi~~ 63 (66)
T 2eqj_A 13 KFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQT 63 (66)
T ss_dssp CSCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETTTEEC
T ss_pred cccCCCEEEEEEccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEeecccc
Confidence 58999999988 444 45999999988899999985 8999999999863
No 462
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=85.92 E-value=0.24 Score=46.98 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=8.6
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 11 i~v~G~~~~GKssl~~~l~ 29 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLFRFS 29 (183)
T ss_dssp EEEECCCCC----------
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8899999999999999885
No 463
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=85.81 E-value=0.3 Score=53.11 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.3
Q ss_pred CCeEEEEEecCCCCchhhhhhcc
Q 003747 408 KTRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 408 ~g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
.+.+++|+||.|+|||||-+.|+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA 61 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLA 61 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999988875
No 464
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=85.71 E-value=0.26 Score=47.26 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=18.2
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 25 i~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 88999999999999999853
No 465
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.69 E-value=0.27 Score=48.48 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=17.7
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 29 i~lvG~~~vGKSsLi~~l~ 47 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRFT 47 (201)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 8899999999999999874
No 466
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.62 E-value=0.27 Score=47.29 Aligned_cols=20 Identities=35% Similarity=0.328 Sum_probs=18.2
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 26 i~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 88999999999999999854
No 467
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.55 E-value=0.28 Score=46.99 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=18.2
Q ss_pred EEEEEecCCCCchhhhhhcc
Q 003747 411 VLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Ig 430 (798)
-++|+|+.|+|||||++.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 38999999999999999885
No 468
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=85.48 E-value=0.27 Score=46.34 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=17.6
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 11 i~v~G~~~~GKssl~~~~~ 29 (182)
T 3bwd_D 11 CVTVGDGAVGKTCLLISYT 29 (182)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 8899999999999999874
No 469
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=85.41 E-value=0.27 Score=47.50 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=18.3
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 29 i~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 88999999999999999853
No 470
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=85.24 E-value=0.28 Score=47.23 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 24 i~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 88999999999999998853
No 471
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=85.23 E-value=0.29 Score=47.62 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 11 i~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 11 LLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 88999999999999998843
No 472
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=85.17 E-value=0.29 Score=47.57 Aligned_cols=20 Identities=30% Similarity=0.174 Sum_probs=18.3
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 27 i~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 27 VVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999999853
No 473
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=85.15 E-value=0.29 Score=46.72 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=18.3
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 24 i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 24 VIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEETTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 88999999999999999854
No 474
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=85.06 E-value=0.29 Score=46.70 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=17.8
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 18 i~v~G~~~~GKssli~~l~ 36 (195)
T 1x3s_A 18 ILIIGESGVGKSSLLLRFT 36 (195)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8899999999999999984
No 475
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=85.02 E-value=0.29 Score=46.89 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=17.7
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 23 i~v~G~~~~GKSsli~~l~ 41 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFC 41 (189)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8899999999999999974
No 476
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=85.00 E-value=0.29 Score=47.38 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=17.7
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 11 i~v~G~~~~GKSsli~~l~ 29 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYA 29 (203)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 8899999999999999874
No 477
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=84.92 E-value=0.3 Score=48.01 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 14 i~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 14 ICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEECCTTSSHHHHHCBCTT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999853
No 478
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=84.89 E-value=0.34 Score=48.54 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.7
Q ss_pred CeEEEEEecCCCCchhhhhhcc
Q 003747 409 TRVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 409 g~iv~ItGPNGsGKTTLLK~Ig 430 (798)
|.+++|=|+-||||||..+.|.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~ 23 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVY 23 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHH
Confidence 4689999999999999999875
No 479
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=84.84 E-value=0.31 Score=47.26 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=18.2
Q ss_pred EEEEEecCCCCchhhhhhcc
Q 003747 411 VLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Ig 430 (798)
-++|+|+.|+|||||++.+.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 38999999999999999984
No 480
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=84.83 E-value=0.3 Score=46.86 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.7
Q ss_pred EEEEEecCCCCchhhhhhcch
Q 003747 411 VLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igl 431 (798)
-++|+|+.|+|||||++.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999853
No 481
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=84.82 E-value=0.31 Score=46.62 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=17.8
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 25 i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 25 VLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp EEEEEETTSSHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8999999999999999984
No 482
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.82 E-value=0.26 Score=48.26 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=21.1
Q ss_pred ceeeeEEEC-CCCeEEEEEecCCCCchhhhhhcch
Q 003747 398 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 398 ~V~~disL~-~~g~iv~ItGPNGsGKTTLLK~Igl 431 (798)
.++.++.+. ...--++|+|+.|+|||||++.+..
T Consensus 13 ~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 13 LGTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp ------CGGGSEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccccccccccCcEEEEECcCCCCHHHHHHHHhc
Confidence 345555554 2222489999999999999998853
No 483
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=84.79 E-value=0.3 Score=46.99 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=18.2
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 26 i~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 88999999999999999853
No 484
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.78 E-value=0.31 Score=47.15 Aligned_cols=20 Identities=25% Similarity=0.172 Sum_probs=18.2
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 31 i~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 31 LAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 88999999999999999853
No 485
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=84.77 E-value=0.32 Score=47.24 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=17.8
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 36 i~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 36 LLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp EEEECCTTSCCTTTTTSSB
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999985
No 486
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=84.75 E-value=0.34 Score=47.99 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=18.6
Q ss_pred eEEEEEecCCCCchhhhhhcc
Q 003747 410 RVLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 410 ~iv~ItGPNGsGKTTLLK~Ig 430 (798)
..++|+|+.|+|||||+..+.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~ 59 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLI 59 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 458899999999999999874
No 487
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=84.73 E-value=0.32 Score=48.90 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=18.0
Q ss_pred EEEEEecCCCCchhhhhhcc
Q 003747 411 VLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Ig 430 (798)
+++|+||.||||+|.-+.|+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999885
No 488
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=84.73 E-value=0.31 Score=46.87 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.2
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 25 i~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 88999999999999999853
No 489
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=84.60 E-value=0.15 Score=52.13 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=18.4
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
+.|+||.|+||||+.+.++.
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 77999999999999999864
No 490
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=84.51 E-value=1.7 Score=43.09 Aligned_cols=20 Identities=15% Similarity=0.383 Sum_probs=17.8
Q ss_pred EEEEEecCCCCchhhhhhcc
Q 003747 411 VLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Ig 430 (798)
+++|=|+-||||||.++.|.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~ 21 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57788999999999999984
No 491
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=84.45 E-value=0.33 Score=47.90 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=18.3
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 31 i~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 88999999999999999854
No 492
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=84.45 E-value=0.32 Score=47.25 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=18.2
Q ss_pred EEEEEecCCCCchhhhhhcc
Q 003747 411 VLVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Ig 430 (798)
-++|+|+.|+|||||++.+.
T Consensus 30 ki~v~G~~~~GKSsli~~l~ 49 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLC 49 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 38999999999999999984
No 493
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=84.31 E-value=0.33 Score=46.94 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 23 i~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 23 CVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 88999999999999998853
No 494
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=84.28 E-value=0.34 Score=46.98 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=16.8
Q ss_pred EEEEecCCCCchhhhhhc
Q 003747 412 LVITGPNTGGKTICLKTV 429 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~I 429 (798)
++|+|+.|+|||||++.+
T Consensus 23 i~~vG~~~vGKTsLi~~l 40 (196)
T 3llu_A 23 ILLMGLRRSGKSSIQKVV 40 (196)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 889999999999999976
No 495
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=84.21 E-value=0.34 Score=47.82 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=17.8
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 37 i~vvG~~~vGKSsli~~l~ 55 (214)
T 2j1l_A 37 VVLVGDGGCGKTSLLMVFA 55 (214)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 8899999999999999985
No 496
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=84.18 E-value=0.34 Score=49.49 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=18.7
Q ss_pred EEEEEecCCCCchhhhhhcch
Q 003747 411 VLVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 411 iv~ItGPNGsGKTTLLK~Igl 431 (798)
.++|+|+.|+|||||++.+.+
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999843
No 497
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=84.11 E-value=0.26 Score=46.45 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=18.1
Q ss_pred EEEEecCCCCchhhhhhcch
Q 003747 412 LVITGPNTGGKTICLKTVGL 431 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Igl 431 (798)
++|+|+.|+|||||++.+..
T Consensus 10 i~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 10 LGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEECCGGGCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998853
No 498
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.09 E-value=0.34 Score=47.13 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=17.8
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||++.+.
T Consensus 23 i~v~G~~~~GKSsli~~l~ 41 (213)
T 3cph_A 23 ILLIGDSGVGKSCLLVRFV 41 (213)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8899999999999999884
No 499
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=84.04 E-value=0.34 Score=50.22 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=17.5
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|+.|+|||||+++|.
T Consensus 11 I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEECTTSSHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 8899999999999999863
No 500
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=83.99 E-value=0.35 Score=47.08 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=17.6
Q ss_pred EEEEecCCCCchhhhhhcc
Q 003747 412 LVITGPNTGGKTICLKTVG 430 (798)
Q Consensus 412 v~ItGPNGsGKTTLLK~Ig 430 (798)
++|+|++|+|||||++.+.
T Consensus 9 v~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 9 VVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 8899999999999999874
Done!