Query 003749
Match_columns 798
No_of_seqs 742 out of 5368
Neff 10.8
Searched_HMMs 46136
Date Thu Mar 28 11:22:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.3E-66 2.8E-71 592.0 62.9 503 248-778 380-907 (1060)
2 PLN03077 Protein ECB2; Provisi 100.0 6.7E-68 1.4E-72 617.6 49.3 529 243-798 124-674 (857)
3 PLN03218 maturation of RBCL 1; 100.0 4.8E-65 1E-69 579.2 63.3 482 293-778 367-874 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 6.1E-64 1.3E-68 584.3 51.1 501 260-778 99-616 (857)
5 PLN03081 pentatricopeptide (PP 100.0 4.8E-60 1.1E-64 538.3 51.5 469 295-780 86-557 (697)
6 PLN03081 pentatricopeptide (PP 100.0 2.2E-59 4.8E-64 532.9 52.5 463 248-748 97-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1E-30 2.3E-35 313.4 63.9 505 247-775 372-895 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.4E-30 1.2E-34 307.2 63.0 504 247-774 338-860 (899)
9 PRK11447 cellulose synthase su 100.0 8.9E-23 1.9E-27 244.3 64.9 511 245-773 69-733 (1157)
10 PRK11447 cellulose synthase su 100.0 7.1E-23 1.5E-27 245.2 61.7 487 264-776 45-696 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 1.6E-23 3.6E-28 210.0 40.4 480 268-766 19-505 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 1.2E-22 2.7E-27 203.7 37.0 432 264-726 65-500 (966)
13 PRK11788 tetratricopeptide rep 99.9 8.2E-23 1.8E-27 218.5 34.8 327 444-796 43-379 (389)
14 TIGR00990 3a0801s09 mitochondr 99.9 2.2E-20 4.8E-25 210.1 53.9 431 298-745 129-571 (615)
15 PRK09782 bacteriophage N4 rece 99.9 1.4E-19 3.1E-24 206.4 57.8 488 236-773 42-699 (987)
16 TIGR00990 3a0801s09 mitochondr 99.9 1.2E-18 2.5E-23 196.2 52.7 425 248-711 137-572 (615)
17 KOG2002 TPR-containing nuclear 99.9 9.1E-19 2E-23 186.0 47.4 488 264-758 216-758 (1018)
18 KOG2002 TPR-containing nuclear 99.9 1.2E-18 2.6E-23 185.1 47.4 502 264-773 181-738 (1018)
19 PRK11788 tetratricopeptide rep 99.9 2.7E-20 5.8E-25 199.1 33.9 301 339-681 43-353 (389)
20 PRK09782 bacteriophage N4 rece 99.9 1.5E-17 3.2E-22 190.1 55.3 493 261-772 122-732 (987)
21 PRK15174 Vi polysaccharide exp 99.9 4.4E-18 9.4E-23 190.6 49.1 369 296-673 42-418 (656)
22 PRK15174 Vi polysaccharide exp 99.9 5.2E-18 1.1E-22 189.9 48.5 362 307-678 16-384 (656)
23 PRK10049 pgaA outer membrane p 99.9 1.5E-17 3.2E-22 190.6 53.2 421 299-761 18-470 (765)
24 PRK10049 pgaA outer membrane p 99.9 4.4E-17 9.6E-22 186.7 52.2 390 282-711 32-457 (765)
25 PRK14574 hmsH outer membrane p 99.9 2.2E-16 4.7E-21 176.8 54.8 443 298-753 36-519 (822)
26 PRK14574 hmsH outer membrane p 99.8 6.3E-16 1.4E-20 173.1 54.5 437 243-711 39-514 (822)
27 KOG0495 HAT repeat protein [RN 99.8 9.1E-15 2E-19 148.8 49.5 471 305-795 385-865 (913)
28 KOG2003 TPR repeat-containing 99.8 2.1E-16 4.6E-21 153.5 34.4 458 299-766 204-709 (840)
29 KOG4422 Uncharacterized conser 99.8 1.9E-14 4.2E-19 139.3 42.3 322 297-623 117-480 (625)
30 KOG2076 RNA polymerase III tra 99.8 5.8E-14 1.3E-18 149.1 48.8 483 264-765 156-719 (895)
31 KOG2076 RNA polymerase III tra 99.8 6.8E-14 1.5E-18 148.5 46.7 466 303-773 146-688 (895)
32 KOG1915 Cell cycle control pro 99.8 4.2E-13 9.2E-18 131.8 48.5 475 237-744 67-584 (677)
33 KOG0495 HAT repeat protein [RN 99.8 5.6E-13 1.2E-17 136.0 50.4 489 264-769 363-869 (913)
34 COG2956 Predicted N-acetylgluc 99.7 4.4E-15 9.5E-20 139.0 29.3 322 447-797 46-380 (389)
35 KOG4422 Uncharacterized conser 99.7 1.9E-13 4.2E-18 132.5 40.9 411 330-747 115-592 (625)
36 KOG1915 Cell cycle control pro 99.7 5.9E-12 1.3E-16 124.0 47.6 450 295-758 72-547 (677)
37 KOG0547 Translocase of outer m 99.7 8.4E-14 1.8E-18 137.5 34.5 419 299-744 118-565 (606)
38 PLN03134 glycine-rich RNA-bind 99.7 3.6E-17 7.8E-22 142.9 9.6 84 150-236 33-116 (144)
39 KOG1155 Anaphase-promoting com 99.7 1.5E-12 3.3E-17 128.0 42.2 363 328-707 161-533 (559)
40 KOG2003 TPR repeat-containing 99.7 6.7E-13 1.4E-17 129.5 35.7 436 261-731 251-709 (840)
41 KOG1173 Anaphase-promoting com 99.7 1.5E-12 3.3E-17 131.4 39.1 454 295-765 48-536 (611)
42 KOG1155 Anaphase-promoting com 99.7 9.4E-12 2E-16 122.5 43.4 162 543-708 332-493 (559)
43 KOG0547 Translocase of outer m 99.6 7.3E-13 1.6E-17 131.0 31.7 410 248-709 125-565 (606)
44 KOG0149 Predicted RNA-binding 99.6 3.1E-16 6.8E-21 139.1 6.1 78 152-233 13-90 (247)
45 KOG1126 DNA-binding cell divis 99.6 1.9E-13 4.1E-18 140.9 26.9 267 298-573 355-623 (638)
46 KOG1126 DNA-binding cell divis 99.6 3.9E-13 8.4E-18 138.6 26.6 284 347-640 335-620 (638)
47 KOG0122 Translation initiation 99.6 5.7E-15 1.2E-19 131.5 11.2 82 150-234 188-269 (270)
48 TIGR00540 hemY_coli hemY prote 99.6 4.6E-12 1E-16 134.8 35.2 296 412-744 95-398 (409)
49 KOG0125 Ataxin 2-binding prote 99.6 1.2E-14 2.5E-19 135.1 12.1 83 151-238 96-178 (376)
50 TIGR01659 sex-lethal sex-letha 99.6 3.1E-14 6.7E-19 143.7 16.4 85 147-234 103-187 (346)
51 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 5.5E-15 1.2E-19 154.9 11.4 81 152-235 270-350 (352)
52 KOG0121 Nuclear cap-binding pr 99.6 3.9E-15 8.5E-20 117.8 6.8 89 144-235 29-117 (153)
53 TIGR00540 hemY_coli hemY prote 99.6 1.4E-11 3E-16 131.1 36.0 121 308-431 96-217 (409)
54 KOG1156 N-terminal acetyltrans 99.6 4.2E-10 9E-15 115.9 44.3 457 299-772 11-503 (700)
55 PRK10747 putative protoheme IX 99.6 2.6E-11 5.6E-16 128.3 37.5 221 444-673 161-388 (398)
56 PF13429 TPR_15: Tetratricopep 99.6 1.7E-14 3.7E-19 145.8 12.7 261 476-743 13-275 (280)
57 KOG0113 U1 small nuclear ribon 99.6 6.8E-15 1.5E-19 134.9 8.1 86 149-237 99-184 (335)
58 PRK10747 putative protoheme IX 99.6 3E-11 6.6E-16 127.7 36.9 252 482-744 129-389 (398)
59 PF13429 TPR_15: Tetratricopep 99.6 4.3E-14 9.2E-19 142.8 14.7 258 373-637 15-274 (280)
60 KOG0107 Alternative splicing f 99.6 7.3E-15 1.6E-19 123.7 7.0 80 150-237 9-88 (195)
61 KOG1156 N-terminal acetyltrans 99.6 1E-09 2.2E-14 113.1 45.0 451 263-743 23-509 (700)
62 COG2956 Predicted N-acetylgluc 99.5 2.2E-11 4.8E-16 114.5 30.1 129 334-465 39-170 (389)
63 KOG3785 Uncharacterized conser 99.5 5.7E-11 1.2E-15 112.8 32.6 423 301-755 62-498 (557)
64 KOG0148 Apoptosis-promoting RN 99.5 1.2E-14 2.6E-19 131.2 7.3 84 149-235 60-143 (321)
65 PF00076 RRM_1: RNA recognitio 99.5 2.6E-14 5.6E-19 110.2 8.0 70 154-227 1-70 (70)
66 KOG3785 Uncharacterized conser 99.5 1.1E-10 2.3E-15 111.0 32.6 455 304-787 30-498 (557)
67 KOG1173 Anaphase-promoting com 99.5 4.1E-10 9E-15 114.1 38.3 463 295-773 15-511 (611)
68 PLN03213 repressor of silencin 99.5 2.8E-14 6E-19 139.4 8.3 81 151-238 10-92 (759)
69 KOG0126 Predicted RNA-binding 99.5 2.4E-15 5.1E-20 127.0 0.5 85 144-231 28-112 (219)
70 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 4E-14 8.7E-19 148.4 9.2 82 151-235 3-84 (352)
71 KOG4318 Bicoid mRNA stability 99.5 3.2E-11 6.9E-16 127.8 29.3 461 292-778 21-592 (1088)
72 COG3071 HemY Uncharacterized e 99.5 1.8E-09 3.8E-14 105.4 38.5 292 379-708 97-388 (400)
73 PLN03120 nucleic acid binding 99.5 1E-13 2.2E-18 128.9 8.8 76 151-233 4-79 (260)
74 COG3071 HemY Uncharacterized e 99.5 3.9E-10 8.4E-15 109.9 33.5 295 413-745 96-390 (400)
75 KOG2047 mRNA splicing factor [ 99.5 1.2E-08 2.5E-13 105.0 45.4 299 470-776 348-683 (835)
76 KOG2376 Signal recognition par 99.5 1.2E-09 2.7E-14 111.2 37.9 440 301-765 17-506 (652)
77 TIGR01645 half-pint poly-U bin 99.5 9.9E-14 2.1E-18 147.4 9.2 80 149-231 105-184 (612)
78 KOG2376 Signal recognition par 99.5 2.1E-09 4.5E-14 109.7 39.4 446 248-742 22-517 (652)
79 PF14259 RRM_6: RNA recognitio 99.5 1.9E-13 4.2E-18 104.8 8.2 70 154-227 1-70 (70)
80 PRK12370 invasion protein regu 99.5 4.8E-11 1E-15 132.0 29.6 218 261-499 275-501 (553)
81 TIGR01645 half-pint poly-U bin 99.5 1.7E-13 3.6E-18 145.6 9.3 82 150-234 203-284 (612)
82 TIGR01659 sex-lethal sex-letha 99.4 2E-13 4.3E-18 137.9 9.0 83 150-235 192-276 (346)
83 KOG0146 RNA-binding protein ET 99.4 4.4E-13 9.5E-18 120.6 9.1 88 145-235 279-366 (371)
84 KOG4207 Predicted splicing fac 99.4 1.6E-13 3.4E-18 118.7 5.9 78 152-232 14-91 (256)
85 KOG0148 Apoptosis-promoting RN 99.4 3.2E-13 6.9E-18 122.1 8.0 82 147-237 160-241 (321)
86 PF12569 NARP1: NMDA receptor- 99.4 7.6E-09 1.7E-13 110.2 42.5 294 302-604 10-333 (517)
87 KOG4162 Predicted calmodulin-b 99.4 5.2E-09 1.1E-13 110.2 39.2 410 325-744 317-782 (799)
88 KOG2047 mRNA splicing factor [ 99.4 5.5E-08 1.2E-12 100.2 45.3 451 295-759 101-630 (835)
89 KOG0111 Cyclophilin-type pepti 99.4 1.3E-13 2.7E-18 120.2 4.0 85 150-237 9-93 (298)
90 KOG0130 RNA-binding protein RB 99.4 3E-13 6.5E-18 108.2 5.5 79 151-232 72-150 (170)
91 KOG0131 Splicing factor 3b, su 99.4 3E-13 6.6E-18 114.9 5.6 82 148-232 6-87 (203)
92 KOG1127 TPR repeat-containing 99.4 1.3E-09 2.8E-14 117.3 34.0 470 296-772 492-1028(1238)
93 KOG1129 TPR repeat-containing 99.4 8.5E-11 1.9E-15 110.5 21.9 234 332-571 224-459 (478)
94 PRK12370 invasion protein regu 99.4 2E-10 4.3E-15 127.1 28.5 184 312-499 277-469 (553)
95 KOG0105 Alternative splicing f 99.4 7.3E-13 1.6E-17 112.3 6.4 81 149-235 4-84 (241)
96 TIGR02521 type_IV_pilW type IV 99.4 3.7E-10 8E-15 111.3 27.0 198 297-498 32-230 (234)
97 PLN03121 nucleic acid binding 99.4 1.3E-12 2.9E-17 119.1 8.4 75 151-232 5-79 (243)
98 KOG1174 Anaphase-promoting com 99.4 1.1E-07 2.5E-12 92.8 42.3 294 449-752 209-505 (564)
99 KOG0117 Heterogeneous nuclear 99.4 1.7E-12 3.7E-17 126.1 9.2 83 149-234 81-164 (506)
100 KOG0145 RNA-binding protein EL 99.4 2.9E-12 6.2E-17 114.9 9.4 81 152-235 42-122 (360)
101 KOG1174 Anaphase-promoting com 99.3 5.8E-08 1.3E-12 94.8 38.6 399 295-711 96-501 (564)
102 KOG0226 RNA-binding proteins [ 99.3 1.8E-11 3.8E-16 110.1 13.6 78 149-229 188-265 (290)
103 KOG0114 Predicted RNA-binding 99.3 4.1E-12 9E-17 96.7 8.0 78 151-234 18-95 (124)
104 TIGR02521 type_IV_pilW type IV 99.3 9E-10 1.9E-14 108.5 27.3 200 330-533 30-230 (234)
105 PF12569 NARP1: NMDA receptor- 99.3 6E-09 1.3E-13 111.0 34.5 293 337-638 10-332 (517)
106 KOG1129 TPR repeat-containing 99.3 4.9E-10 1.1E-14 105.5 22.6 229 475-709 227-457 (478)
107 TIGR01628 PABP-1234 polyadenyl 99.3 3.4E-12 7.3E-17 142.0 10.0 78 153-233 2-79 (562)
108 KOG4162 Predicted calmodulin-b 99.3 4.7E-08 1E-12 103.2 39.3 406 362-773 319-776 (799)
109 KOG0108 mRNA cleavage and poly 99.3 2.9E-12 6.3E-17 130.5 8.0 83 152-237 19-101 (435)
110 KOG0548 Molecular co-chaperone 99.3 9.8E-09 2.1E-13 104.0 32.5 434 302-763 8-471 (539)
111 KOG0124 Polypyrimidine tract-b 99.3 1.5E-12 3.3E-17 122.4 4.8 77 151-230 113-189 (544)
112 smart00362 RRM_2 RNA recogniti 99.3 9.6E-12 2.1E-16 96.5 8.7 72 153-229 1-72 (72)
113 KOG1840 Kinesin light chain [C 99.3 1.6E-09 3.6E-14 113.7 27.6 98 436-533 199-310 (508)
114 KOG0127 Nucleolar protein fibr 99.3 8.2E-12 1.8E-16 124.4 9.4 88 150-238 291-382 (678)
115 KOG4318 Bicoid mRNA stability 99.3 1.8E-10 3.9E-15 122.2 19.4 280 458-774 12-294 (1088)
116 TIGR01648 hnRNP-R-Q heterogene 99.3 5.7E-12 1.2E-16 134.0 8.3 78 151-232 58-136 (578)
117 KOG0144 RNA-binding protein CU 99.3 2.3E-11 4.9E-16 117.8 10.6 82 150-234 33-117 (510)
118 KOG1840 Kinesin light chain [C 99.3 2.1E-09 4.6E-14 112.8 26.1 238 506-743 199-477 (508)
119 TIGR01628 PABP-1234 polyadenyl 99.3 1E-11 2.2E-16 138.3 9.6 83 149-235 283-365 (562)
120 smart00360 RRM RNA recognition 99.3 1.8E-11 3.8E-16 94.7 8.0 71 156-229 1-71 (71)
121 TIGR01642 U2AF_lg U2 snRNP aux 99.3 2.1E-11 4.6E-16 134.7 11.7 82 150-234 294-375 (509)
122 TIGR01622 SF-CC1 splicing fact 99.2 1.5E-11 3.2E-16 133.9 9.3 80 151-233 186-265 (457)
123 KOG0145 RNA-binding protein EL 99.2 1.7E-11 3.8E-16 110.0 7.9 80 152-234 279-358 (360)
124 KOG3617 WD40 and TPR repeat-co 99.2 4.1E-08 8.8E-13 103.5 31.9 413 306-787 738-1216(1416)
125 smart00361 RRM_1 RNA recogniti 99.2 3.7E-11 8.1E-16 91.2 7.3 61 165-228 2-69 (70)
126 TIGR01622 SF-CC1 splicing fact 99.2 2.7E-11 5.8E-16 131.8 9.0 81 149-233 87-167 (457)
127 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 3.1E-11 6.7E-16 130.4 8.8 78 151-235 2-79 (481)
128 KOG1127 TPR repeat-containing 99.2 8.5E-08 1.9E-12 103.7 33.8 335 295-635 525-908 (1238)
129 COG3063 PilF Tfp pilus assembl 99.2 2.5E-08 5.5E-13 90.2 25.1 199 298-500 37-236 (250)
130 KOG0548 Molecular co-chaperone 99.2 1.4E-07 3E-12 95.9 33.2 424 264-727 19-471 (539)
131 PF13041 PPR_2: PPR repeat fam 99.2 5.8E-11 1.2E-15 83.4 6.7 50 714-763 1-50 (50)
132 PRK11189 lipoprotein NlpI; Pro 99.2 3.7E-08 8.1E-13 99.6 29.9 218 264-501 43-266 (296)
133 KOG0415 Predicted peptidyl pro 99.2 3.8E-11 8.3E-16 112.8 7.2 83 149-234 237-319 (479)
134 KOG0109 RNA-binding protein LA 99.2 2.8E-11 6.1E-16 110.9 5.7 73 152-235 3-75 (346)
135 KOG4340 Uncharacterized conser 99.2 5.2E-08 1.1E-12 90.9 26.4 196 299-503 13-210 (459)
136 PF13893 RRM_5: RNA recognitio 99.2 1.1E-10 2.3E-15 84.4 7.2 56 168-231 1-56 (56)
137 TIGR01648 hnRNP-R-Q heterogene 99.2 7E-11 1.5E-15 125.9 8.8 75 150-235 232-308 (578)
138 cd00590 RRM RRM (RNA recogniti 99.1 2E-10 4.3E-15 89.6 8.8 74 153-230 1-74 (74)
139 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 2.2E-10 4.7E-15 123.8 12.1 78 150-235 274-352 (481)
140 COG0724 RNA-binding proteins ( 99.1 8.9E-11 1.9E-15 120.9 8.8 80 151-233 115-194 (306)
141 KOG0109 RNA-binding protein LA 99.1 3.3E-11 7.2E-16 110.5 4.7 78 149-237 76-153 (346)
142 PRK11189 lipoprotein NlpI; Pro 99.1 3.7E-08 8.1E-13 99.6 27.4 150 310-463 40-192 (296)
143 KOG0117 Heterogeneous nuclear 99.1 7.2E-11 1.6E-15 115.0 7.0 82 146-238 254-335 (506)
144 PF13041 PPR_2: PPR repeat fam 99.1 1.3E-10 2.9E-15 81.5 6.5 50 329-378 1-50 (50)
145 KOG0116 RasGAP SH3 binding pro 99.1 7.1E-10 1.5E-14 112.5 13.9 88 148-239 285-372 (419)
146 KOG1914 mRNA cleavage and poly 99.1 1.1E-05 2.3E-10 82.3 42.6 409 295-709 19-500 (656)
147 KOG0131 Splicing factor 3b, su 99.1 6.9E-11 1.5E-15 100.7 5.0 83 149-234 94-177 (203)
148 KOG4340 Uncharacterized conser 99.1 1.3E-07 2.9E-12 88.3 26.8 329 334-673 13-373 (459)
149 KOG0624 dsRNA-activated protei 99.1 8.6E-06 1.9E-10 78.0 39.2 331 295-676 37-371 (504)
150 cd05804 StaR_like StaR_like; a 99.1 4.9E-07 1.1E-11 95.3 35.0 200 297-500 7-215 (355)
151 KOG4208 Nucleolar RNA-binding 99.1 1.8E-10 3.9E-15 100.9 6.7 81 151-234 49-130 (214)
152 KOG4206 Spliceosomal protein s 99.1 1.7E-10 3.7E-15 103.1 6.7 81 149-235 7-91 (221)
153 KOG3616 Selective LIM binding 99.1 2.4E-07 5.2E-12 96.6 30.0 406 301-773 501-930 (1636)
154 KOG3617 WD40 and TPR repeat-co 99.1 3.5E-07 7.5E-12 96.8 30.8 241 330-603 725-994 (1416)
155 KOG4212 RNA-binding protein hn 99.1 2.6E-10 5.7E-15 110.4 7.2 82 152-237 45-127 (608)
156 COG3063 PilF Tfp pilus assembl 99.1 1.8E-07 3.8E-12 84.8 24.5 206 544-755 38-244 (250)
157 KOG0144 RNA-binding protein CU 99.1 6.6E-10 1.4E-14 107.8 9.6 90 143-235 416-505 (510)
158 KOG2053 Mitochondrial inherita 99.1 6.4E-05 1.4E-09 81.6 50.8 217 264-501 26-256 (932)
159 KOG2053 Mitochondrial inherita 99.1 2.7E-05 5.8E-10 84.3 44.6 226 306-538 19-258 (932)
160 KOG0624 dsRNA-activated protei 99.0 8.7E-07 1.9E-11 84.6 29.7 89 622-711 280-371 (504)
161 cd05804 StaR_like StaR_like; a 99.0 1.5E-06 3.2E-11 91.7 35.7 199 332-534 7-214 (355)
162 KOG0147 Transcriptional coacti 99.0 2.1E-10 4.7E-15 115.3 5.9 80 153-235 280-359 (549)
163 KOG0127 Nucleolar protein fibr 99.0 2.7E-10 5.9E-15 113.8 6.2 83 152-237 6-88 (678)
164 KOG0985 Vesicle coat protein c 99.0 4.7E-06 1E-10 90.4 36.4 341 330-728 983-1325(1666)
165 KOG0146 RNA-binding protein ET 99.0 7.6E-10 1.6E-14 100.1 6.9 82 150-235 18-102 (371)
166 KOG0985 Vesicle coat protein c 99.0 2.3E-05 4.9E-10 85.4 40.9 72 690-773 1513-1584(1666)
167 PRK04841 transcriptional regul 99.0 5.7E-06 1.2E-10 99.1 42.0 373 371-745 346-760 (903)
168 KOG4205 RNA-binding protein mu 99.0 3.4E-10 7.5E-15 110.3 4.5 86 150-239 5-90 (311)
169 PRK04841 transcriptional regul 99.0 2.4E-06 5.1E-11 102.4 38.1 371 300-676 345-761 (903)
170 KOG1125 TPR repeat-containing 99.0 1.2E-07 2.7E-12 97.1 22.6 219 376-603 295-525 (579)
171 KOG1914 mRNA cleavage and poly 99.0 6E-05 1.3E-09 77.0 40.1 412 328-745 17-501 (656)
172 KOG3616 Selective LIM binding 99.0 1.4E-06 3E-11 91.2 29.3 419 306-787 454-925 (1636)
173 KOG0153 Predicted RNA-binding 98.9 1.6E-09 3.4E-14 102.5 6.8 74 152-233 229-302 (377)
174 PLN02789 farnesyltranstransfer 98.9 1.1E-06 2.4E-11 88.6 27.6 138 304-445 45-185 (320)
175 PLN02789 farnesyltranstransfer 98.9 1.1E-06 2.4E-11 88.7 27.4 148 262-413 35-188 (320)
176 KOG1125 TPR repeat-containing 98.9 1.9E-07 4.1E-12 95.8 21.0 224 337-569 291-526 (579)
177 KOG1070 rRNA processing protei 98.9 9E-07 1.9E-11 99.3 27.4 202 296-503 1458-1666(1710)
178 KOG1924 RhoA GTPase effector D 98.9 1E-08 2.2E-13 107.0 11.6 8 317-324 733-740 (1102)
179 TIGR01642 U2AF_lg U2 snRNP aux 98.9 8.1E-09 1.8E-13 114.2 11.7 72 150-231 174-257 (509)
180 KOG0124 Polypyrimidine tract-b 98.9 2.6E-09 5.6E-14 101.1 6.1 82 147-231 206-287 (544)
181 KOG0123 Polyadenylate-binding 98.9 3.5E-09 7.5E-14 107.8 7.2 80 150-235 75-154 (369)
182 KOG1457 RNA binding protein (c 98.8 1.7E-08 3.6E-13 89.1 9.6 84 152-237 35-121 (284)
183 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.3E-08 2.8E-13 102.1 9.0 87 148-237 402-488 (940)
184 PF04733 Coatomer_E: Coatomer 98.8 1.3E-07 2.8E-12 94.1 14.3 49 445-499 111-159 (290)
185 PF04733 Coatomer_E: Coatomer 98.8 2.9E-07 6.2E-12 91.6 16.7 81 592-674 183-264 (290)
186 KOG0110 RNA-binding protein (R 98.8 2.5E-08 5.4E-13 103.8 8.9 80 151-232 515-596 (725)
187 KOG1070 rRNA processing protei 98.7 7.5E-06 1.6E-10 92.2 27.7 235 365-603 1457-1698(1710)
188 KOG1128 Uncharacterized conser 98.7 1.1E-05 2.4E-10 85.2 27.4 217 438-675 400-616 (777)
189 KOG0132 RNA polymerase II C-te 98.7 1.5E-08 3.3E-13 106.0 6.5 79 150-237 420-498 (894)
190 KOG1128 Uncharacterized conser 98.7 2.7E-06 6E-11 89.7 21.9 214 300-534 402-615 (777)
191 PRK14720 transcript cleavage f 98.7 7.6E-06 1.6E-10 91.8 26.8 150 295-465 30-198 (906)
192 KOG0110 RNA-binding protein (R 98.7 1.6E-08 3.4E-13 105.3 4.2 82 151-235 613-694 (725)
193 KOG4212 RNA-binding protein hn 98.6 3.6E-08 7.8E-13 95.9 5.4 77 147-231 532-608 (608)
194 TIGR03302 OM_YfiO outer membra 98.6 5.1E-06 1.1E-10 81.6 20.6 185 295-500 32-232 (235)
195 COG5010 TadD Flp pilus assembl 98.6 6E-06 1.3E-10 76.9 19.2 160 580-743 70-229 (257)
196 KOG0533 RRM motif-containing p 98.6 6.7E-08 1.5E-12 90.3 6.6 88 152-243 84-171 (243)
197 KOG4209 Splicing factor RNPS1, 98.6 4.2E-08 9E-13 92.4 5.1 82 149-234 99-180 (231)
198 PRK14720 transcript cleavage f 98.6 2.1E-05 4.6E-10 88.3 26.7 239 330-622 30-268 (906)
199 KOG4454 RNA binding protein (R 98.6 2.7E-08 5.9E-13 87.6 3.2 78 152-234 10-87 (267)
200 KOG0106 Alternative splicing f 98.6 3.8E-08 8.3E-13 89.6 3.8 73 152-235 2-74 (216)
201 TIGR03302 OM_YfiO outer membra 98.6 1E-05 2.2E-10 79.5 21.5 187 329-535 31-232 (235)
202 PRK10370 formate-dependent nit 98.6 8.1E-06 1.8E-10 76.7 19.6 119 624-745 52-173 (198)
203 KOG0123 Polyadenylate-binding 98.6 1.2E-07 2.6E-12 96.8 7.5 74 152-234 2-75 (369)
204 KOG4205 RNA-binding protein mu 98.6 6.6E-08 1.4E-12 94.5 5.1 84 150-237 96-179 (311)
205 KOG1548 Transcription elongati 98.6 1.6E-07 3.4E-12 89.2 7.4 80 149-232 132-219 (382)
206 PRK10370 formate-dependent nit 98.5 2.8E-05 6.1E-10 73.1 21.3 125 589-717 52-179 (198)
207 COG5010 TadD Flp pilus assembl 98.5 2.3E-05 5E-10 73.1 19.7 159 300-462 70-228 (257)
208 KOG3081 Vesicle coat complex C 98.5 5.2E-05 1.1E-09 70.6 21.3 149 585-744 117-270 (299)
209 PF12854 PPR_1: PPR repeat 98.5 2E-07 4.4E-12 58.4 4.0 32 361-392 2-33 (34)
210 KOG3081 Vesicle coat complex C 98.5 0.00014 3E-09 67.8 23.6 48 522-570 189-236 (299)
211 PRK15359 type III secretion sy 98.5 1.1E-05 2.3E-10 71.7 16.3 94 335-430 28-121 (144)
212 PRK15179 Vi polysaccharide bio 98.5 6.4E-05 1.4E-09 83.9 25.7 135 328-465 83-217 (694)
213 PRK15359 type III secretion sy 98.5 1.8E-05 3.8E-10 70.3 17.3 91 652-744 30-120 (144)
214 PF12854 PPR_1: PPR repeat 98.4 3.1E-07 6.7E-12 57.6 4.1 32 711-742 2-33 (34)
215 KOG0151 Predicted splicing reg 98.4 6.3E-07 1.4E-11 93.1 8.2 86 148-235 171-258 (877)
216 PRK15179 Vi polysaccharide bio 98.4 0.00014 3.1E-09 81.2 26.8 181 575-765 85-269 (694)
217 KOG4660 Protein Mei2, essentia 98.4 4.7E-07 1E-11 92.1 5.5 69 151-227 75-143 (549)
218 KOG3671 Actin regulatory prote 98.3 3.7E-05 7.9E-10 77.2 17.3 26 156-181 486-511 (569)
219 COG4783 Putative Zn-dependent 98.3 0.00025 5.4E-09 72.2 23.3 120 375-497 315-434 (484)
220 TIGR02552 LcrH_SycD type III s 98.3 3.8E-05 8.3E-10 67.8 15.7 109 646-758 17-125 (135)
221 COG4783 Putative Zn-dependent 98.3 0.00034 7.3E-09 71.3 23.5 112 552-666 317-428 (484)
222 KOG3060 Uncharacterized conser 98.3 0.00068 1.5E-08 62.9 23.2 185 312-500 28-220 (289)
223 KOG2041 WD40 repeat protein [G 98.3 0.00074 1.6E-08 71.1 25.9 236 363-639 689-951 (1189)
224 TIGR02552 LcrH_SycD type III s 98.3 4.3E-05 9.4E-10 67.5 15.2 99 296-396 17-115 (135)
225 KOG3060 Uncharacterized conser 98.2 0.0034 7.3E-08 58.5 25.1 163 474-640 55-220 (289)
226 KOG0550 Molecular chaperone (D 98.1 0.0018 3.8E-08 64.5 24.1 158 479-640 177-350 (486)
227 PF14938 SNAP: Soluble NSF att 98.1 0.00053 1.1E-08 69.0 21.1 22 303-324 42-63 (282)
228 PF07079 DUF1347: Protein of u 98.1 0.018 3.9E-07 58.3 46.3 434 307-756 17-530 (549)
229 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00012 2.6E-09 75.5 15.8 123 334-462 172-294 (395)
230 KOG0550 Molecular chaperone (D 98.1 0.0019 4.2E-08 64.2 23.0 274 375-675 58-350 (486)
231 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00014 3E-09 75.0 15.8 127 297-429 170-296 (395)
232 KOG1457 RNA binding protein (c 98.0 2.3E-05 4.9E-10 69.8 8.3 66 150-222 209-274 (284)
233 PF07079 DUF1347: Protein of u 98.0 0.021 4.7E-07 57.8 43.2 431 264-721 23-530 (549)
234 KOG1130 Predicted G-alpha GTPa 98.0 7.7E-05 1.7E-09 73.5 12.7 266 303-569 24-343 (639)
235 PF09976 TPR_21: Tetratricopep 98.0 0.00031 6.8E-09 62.6 15.8 115 309-426 24-143 (145)
236 KOG0147 Transcriptional coacti 98.0 4.2E-06 9E-11 85.1 3.8 81 149-233 177-257 (549)
237 KOG2041 WD40 repeat protein [G 98.0 0.013 2.9E-07 62.1 28.9 205 328-566 689-903 (1189)
238 KOG0120 Splicing factor U2AF, 98.0 5.8E-06 1.3E-10 85.4 4.4 85 148-235 286-370 (500)
239 PF09976 TPR_21: Tetratricopep 98.0 0.00042 9.1E-09 61.8 15.9 125 614-742 15-144 (145)
240 PF04059 RRM_2: RNA recognitio 97.9 4.1E-05 9E-10 60.7 7.5 77 152-231 2-84 (97)
241 TIGR00756 PPR pentatricopeptid 97.9 1.8E-05 4E-10 50.5 4.6 33 718-750 2-34 (35)
242 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.039 8.5E-07 55.8 33.0 167 611-783 397-568 (660)
243 KOG1130 Predicted G-alpha GTPa 97.9 0.00013 2.8E-09 71.9 11.2 285 444-744 25-343 (639)
244 PF10037 MRP-S27: Mitochondria 97.9 0.00023 5E-09 73.7 13.6 173 610-787 65-239 (429)
245 PF13812 PPR_3: Pentatricopept 97.8 3.6E-05 7.7E-10 48.7 4.6 33 717-749 2-34 (34)
246 PF14938 SNAP: Soluble NSF att 97.8 0.0017 3.6E-08 65.4 18.8 167 338-535 42-225 (282)
247 PRK10866 outer membrane biogen 97.8 0.012 2.5E-07 57.4 23.8 68 330-398 31-101 (243)
248 PF08579 RPM2: Mitochondrial r 97.8 0.00033 7.2E-09 56.3 10.1 81 298-378 27-116 (120)
249 PF10037 MRP-S27: Mitochondria 97.8 0.00032 7E-09 72.6 13.0 129 286-414 56-186 (429)
250 PLN03088 SGT1, suppressor of 97.8 0.00073 1.6E-08 70.2 15.6 91 619-711 10-100 (356)
251 KOG1258 mRNA processing protei 97.8 0.084 1.8E-06 56.0 35.2 129 298-429 47-179 (577)
252 KOG1995 Conserved Zn-finger pr 97.8 2.4E-05 5.2E-10 75.7 4.1 85 148-235 63-155 (351)
253 PF12895 Apc3: Anaphase-promot 97.8 5.9E-05 1.3E-09 59.9 5.8 81 309-391 2-83 (84)
254 cd00189 TPR Tetratricopeptide 97.7 0.00047 1E-08 56.1 11.5 94 299-394 3-96 (100)
255 KOG2796 Uncharacterized conser 97.7 0.04 8.6E-07 51.7 24.3 156 593-758 166-326 (366)
256 PF11608 Limkain-b1: Limkain b 97.7 6.7E-05 1.4E-09 56.0 5.2 69 153-234 4-77 (90)
257 PF08777 RRM_3: RNA binding mo 97.7 6.9E-05 1.5E-09 61.3 5.7 72 152-230 2-76 (105)
258 PF05843 Suf: Suppressor of fo 97.7 0.00075 1.6E-08 67.5 14.4 131 297-430 2-136 (280)
259 PRK15363 pathogenicity island 97.7 0.00091 2E-08 58.3 12.8 93 335-429 39-131 (157)
260 TIGR00756 PPR pentatricopeptid 97.7 5.7E-05 1.2E-09 48.1 4.2 33 298-330 2-34 (35)
261 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.077 1.7E-06 53.8 40.3 83 295-380 41-123 (660)
262 PRK10866 outer membrane biogen 97.7 0.0089 1.9E-07 58.2 20.9 66 295-361 31-99 (243)
263 KOG2796 Uncharacterized conser 97.7 0.01 2.2E-07 55.5 19.6 145 313-465 166-315 (366)
264 cd00189 TPR Tetratricopeptide 97.7 0.00074 1.6E-08 54.9 11.8 94 649-744 3-96 (100)
265 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0015 3.3E-08 55.9 14.1 24 336-359 7-30 (119)
266 KOG4206 Spliceosomal protein s 97.7 0.00011 2.4E-09 66.6 6.7 76 149-232 144-220 (221)
267 PF04840 Vps16_C: Vps16, C-ter 97.7 0.068 1.5E-06 54.1 27.3 103 618-740 184-286 (319)
268 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0016 3.5E-08 55.8 14.0 98 298-395 4-105 (119)
269 PRK15363 pathogenicity island 97.7 0.0032 7E-08 55.0 15.3 95 368-464 37-131 (157)
270 KOG4307 RNA binding protein RB 97.7 0.002 4.3E-08 67.8 16.3 77 151-231 434-511 (944)
271 KOG1830 Wiskott Aldrich syndro 97.7 0.0012 2.6E-08 65.0 13.9 8 223-230 494-501 (518)
272 PRK02603 photosystem I assembl 97.6 0.0022 4.8E-08 59.1 15.4 131 611-767 35-167 (172)
273 CHL00033 ycf3 photosystem I as 97.6 0.0012 2.5E-08 60.8 13.5 95 647-742 36-139 (168)
274 PF13812 PPR_3: Pentatricopept 97.6 8.8E-05 1.9E-09 46.9 4.1 29 333-361 3-31 (34)
275 KOG0553 TPR repeat-containing 97.6 0.00068 1.5E-08 64.8 11.7 96 620-719 90-185 (304)
276 CHL00033 ycf3 photosystem I as 97.6 0.002 4.4E-08 59.1 14.8 95 296-391 35-138 (168)
277 PLN03088 SGT1, suppressor of 97.6 0.0016 3.4E-08 67.7 15.6 92 303-396 9-100 (356)
278 PF01535 PPR: PPR repeat; Int 97.6 6.2E-05 1.3E-09 46.4 3.1 30 718-747 2-31 (31)
279 PF12895 Apc3: Anaphase-promot 97.6 0.00013 2.8E-09 57.9 5.8 81 344-426 2-83 (84)
280 KOG4211 Splicing factor hnRNP- 97.6 0.00012 2.7E-09 73.6 6.6 73 152-231 11-83 (510)
281 PRK10153 DNA-binding transcrip 97.6 0.011 2.3E-07 64.4 21.9 134 293-430 334-482 (517)
282 PF05843 Suf: Suppressor of fo 97.6 0.0014 3E-08 65.6 14.2 130 367-499 2-135 (280)
283 PRK02603 photosystem I assembl 97.5 0.0032 6.9E-08 58.1 15.0 131 295-451 34-166 (172)
284 KOG1190 Polypyrimidine tract-b 97.5 0.00076 1.7E-08 66.2 10.3 78 151-236 297-375 (492)
285 KOG0553 TPR repeat-containing 97.5 0.0014 3E-08 62.8 11.7 100 584-687 89-188 (304)
286 COG5175 MOT2 Transcriptional r 97.5 0.00021 4.5E-09 67.9 6.1 81 151-233 114-202 (480)
287 PF01535 PPR: PPR repeat; Int 97.5 0.00013 2.9E-09 44.8 3.4 26 334-359 3-28 (31)
288 PF08579 RPM2: Mitochondrial r 97.5 0.002 4.3E-08 52.0 10.4 76 688-763 32-116 (120)
289 KOG2280 Vacuolar assembly/sort 97.4 0.13 2.9E-06 55.7 26.6 88 336-425 442-531 (829)
290 COG4700 Uncharacterized protei 97.4 0.052 1.1E-06 48.2 19.4 97 368-464 91-188 (251)
291 PF04840 Vps16_C: Vps16, C-ter 97.4 0.18 4E-06 51.1 29.5 112 576-707 177-288 (319)
292 PF13525 YfiO: Outer membrane 97.4 0.016 3.5E-07 54.9 18.2 56 340-395 14-71 (203)
293 COG4700 Uncharacterized protei 97.4 0.02 4.3E-07 50.7 16.5 129 295-425 88-217 (251)
294 KOG4210 Nuclear localization s 97.4 0.00011 2.4E-09 72.2 2.9 82 152-237 185-267 (285)
295 KOG2114 Vacuolar assembly/sort 97.3 0.054 1.2E-06 59.3 22.6 139 306-462 378-516 (933)
296 PF13525 YfiO: Outer membrane 97.3 0.032 7E-07 52.9 19.0 64 297-360 6-71 (203)
297 PF12688 TPR_5: Tetratrico pep 97.3 0.013 2.8E-07 49.4 14.3 92 302-393 7-102 (120)
298 KOG0106 Alternative splicing f 97.3 0.00013 2.7E-09 67.0 2.3 70 149-229 97-166 (216)
299 KOG2114 Vacuolar assembly/sort 97.3 0.082 1.8E-06 57.9 23.4 51 687-741 711-761 (933)
300 COG4235 Cytochrome c biogenesi 97.3 0.014 3.1E-07 56.5 16.1 127 628-759 139-268 (287)
301 PRK10153 DNA-binding transcrip 97.3 0.015 3.3E-07 63.2 18.4 63 680-744 419-481 (517)
302 COG4235 Cytochrome c biogenesi 97.3 0.014 3.1E-07 56.5 16.0 99 295-395 155-256 (287)
303 KOG1538 Uncharacterized conser 97.2 0.075 1.6E-06 56.2 21.4 54 507-569 748-801 (1081)
304 KOG3152 TBP-binding protein, a 97.2 0.00017 3.6E-09 66.2 2.1 74 149-225 72-157 (278)
305 PF12688 TPR_5: Tetratrico pep 97.2 0.022 4.8E-07 48.0 14.6 17 445-461 84-100 (120)
306 KOG1538 Uncharacterized conser 97.2 0.023 5.1E-07 59.8 17.4 78 621-709 757-845 (1081)
307 PF06239 ECSIT: Evolutionarily 97.2 0.0075 1.6E-07 55.3 12.2 115 610-743 46-166 (228)
308 PF06239 ECSIT: Evolutionarily 97.1 0.008 1.7E-07 55.1 11.9 87 295-381 46-153 (228)
309 PF13414 TPR_11: TPR repeat; P 97.1 0.0021 4.4E-08 48.7 7.2 59 333-392 5-64 (69)
310 KOG4307 RNA binding protein RB 97.1 0.0017 3.8E-08 68.2 8.7 79 149-230 864-943 (944)
311 PF13414 TPR_11: TPR repeat; P 97.1 0.0018 4E-08 48.9 6.9 65 365-430 2-67 (69)
312 COG3898 Uncharacterized membra 97.1 0.35 7.6E-06 48.4 32.1 118 344-464 97-216 (531)
313 PF13432 TPR_16: Tetratricopep 97.1 0.0024 5.3E-08 47.5 7.0 57 687-744 3-59 (65)
314 KOG2280 Vacuolar assembly/sort 97.0 0.75 1.6E-05 50.2 30.1 97 680-786 683-779 (829)
315 PF13432 TPR_16: Tetratricopep 97.0 0.0028 6E-08 47.2 6.7 54 340-394 6-59 (65)
316 KOG1190 Polypyrimidine tract-b 97.0 0.00038 8.2E-09 68.2 2.0 78 150-234 27-104 (492)
317 KOG2066 Vacuolar assembly/sort 97.0 0.86 1.9E-05 50.0 28.4 103 302-413 362-467 (846)
318 PF14559 TPR_19: Tetratricopep 97.0 0.0035 7.5E-08 47.2 7.0 51 693-744 3-53 (68)
319 KOG1923 Rac1 GTPase effector F 96.9 0.0035 7.6E-08 67.2 8.9 9 265-273 441-449 (830)
320 PF14559 TPR_19: Tetratricopep 96.9 0.0032 6.8E-08 47.4 6.4 52 308-360 3-54 (68)
321 PF13281 DUF4071: Domain of un 96.9 0.15 3.2E-06 52.2 19.8 178 297-500 142-334 (374)
322 PRK10803 tol-pal system protei 96.9 0.02 4.3E-07 56.2 13.1 95 334-429 146-245 (263)
323 KOG1258 mRNA processing protei 96.9 0.87 1.9E-05 48.7 36.2 396 264-695 62-489 (577)
324 PRK10803 tol-pal system protei 96.9 0.019 4.2E-07 56.3 12.9 97 298-396 145-247 (263)
325 KOG4849 mRNA cleavage factor I 96.8 0.018 3.9E-07 55.5 11.8 12 163-174 357-368 (498)
326 PF10300 DUF3808: Protein of u 96.8 1.1 2.3E-05 48.7 27.9 163 579-744 191-375 (468)
327 PF09205 DUF1955: Domain of un 96.8 0.21 4.4E-06 41.8 16.0 140 587-748 13-152 (161)
328 KOG1585 Protein required for f 96.7 0.24 5.2E-06 46.3 17.9 86 298-393 33-118 (308)
329 PF10300 DUF3808: Protein of u 96.7 0.065 1.4E-06 57.9 17.0 116 381-499 248-375 (468)
330 KOG0129 Predicted RNA-binding 96.6 0.0038 8.2E-08 63.9 6.3 66 148-214 256-326 (520)
331 PF13281 DUF4071: Domain of un 96.6 0.54 1.2E-05 48.2 21.5 163 581-745 146-334 (374)
332 KOG0120 Splicing factor U2AF, 96.6 0.0039 8.5E-08 65.1 6.5 69 167-237 425-495 (500)
333 KOG1996 mRNA splicing factor [ 96.6 0.0049 1.1E-07 57.8 6.4 66 167-234 302-367 (378)
334 KOG1456 Heterogeneous nuclear 96.6 0.012 2.6E-07 57.3 9.2 79 150-236 286-365 (494)
335 KOG2253 U1 snRNP complex, subu 96.6 0.0025 5.5E-08 67.1 5.0 67 153-231 42-108 (668)
336 KOG1548 Transcription elongati 96.6 0.0063 1.4E-07 58.8 6.9 82 147-235 261-353 (382)
337 PRK15180 Vi polysaccharide bio 96.6 1.2 2.5E-05 46.0 29.0 100 300-401 327-426 (831)
338 KOG0129 Predicted RNA-binding 96.5 0.0049 1.1E-07 63.1 6.2 65 149-214 368-433 (520)
339 COG0457 NrfG FOG: TPR repeat [ 96.5 0.91 2E-05 43.9 30.3 124 620-744 139-264 (291)
340 PF08952 DUF1866: Domain of un 96.5 0.011 2.4E-07 50.5 7.1 75 148-234 24-107 (146)
341 KOG4211 Splicing factor hnRNP- 96.5 0.0059 1.3E-07 62.0 6.3 75 152-231 104-179 (510)
342 KOG1855 Predicted RNA-binding 96.5 0.002 4.3E-08 63.9 3.0 65 150-214 230-306 (484)
343 KOG1920 IkappaB kinase complex 96.4 1.6 3.4E-05 50.5 25.3 15 339-353 685-699 (1265)
344 PRK15331 chaperone protein Sic 96.4 0.2 4.2E-06 44.3 14.7 87 411-499 47-133 (165)
345 COG4105 ComL DNA uptake lipopr 96.4 0.95 2.1E-05 43.2 21.1 57 512-569 173-232 (254)
346 PF14605 Nup35_RRM_2: Nup53/35 96.4 0.0056 1.2E-07 42.8 4.1 51 153-211 3-53 (53)
347 PF13371 TPR_9: Tetratricopept 96.4 0.021 4.6E-07 43.6 7.9 55 689-744 3-57 (73)
348 COG1747 Uncharacterized N-term 96.4 1.6 3.5E-05 45.5 25.5 166 399-571 64-235 (711)
349 COG3898 Uncharacterized membra 96.4 1.3 2.9E-05 44.5 32.0 148 591-749 244-396 (531)
350 KOG1920 IkappaB kinase complex 96.4 2.8 6.1E-05 48.6 26.6 114 510-639 912-1027(1265)
351 COG3118 Thioredoxin domain-con 96.3 0.44 9.5E-06 46.3 17.4 139 343-485 146-286 (304)
352 PRK15331 chaperone protein Sic 96.3 0.066 1.4E-06 47.2 11.0 85 343-429 49-133 (165)
353 COG0457 NrfG FOG: TPR repeat [ 96.3 1.2 2.6E-05 43.1 30.4 54 481-534 177-230 (291)
354 PF03704 BTAD: Bacterial trans 96.3 0.078 1.7E-06 47.2 12.1 58 405-463 66-123 (146)
355 PF05172 Nup35_RRM: Nup53/35/4 96.3 0.021 4.6E-07 45.9 7.2 77 152-232 7-90 (100)
356 KOG2610 Uncharacterized conser 96.2 0.22 4.8E-06 48.6 15.0 158 339-498 111-274 (491)
357 PF12921 ATP13: Mitochondrial 96.2 0.11 2.3E-06 44.4 11.8 108 645-772 1-109 (126)
358 PF13371 TPR_9: Tetratricopept 96.2 0.03 6.4E-07 42.8 7.9 55 340-395 4-58 (73)
359 KOG0543 FKBP-type peptidyl-pro 96.2 0.081 1.8E-06 53.4 12.6 139 302-463 214-353 (397)
360 KOG2066 Vacuolar assembly/sort 96.2 2.7 5.8E-05 46.4 29.4 168 337-533 362-532 (846)
361 PF04053 Coatomer_WDAD: Coatom 96.2 0.1 2.2E-06 55.5 14.0 157 304-496 269-427 (443)
362 PRK11906 transcriptional regul 96.2 0.37 8.1E-06 50.1 17.5 116 264-396 275-402 (458)
363 COG4785 NlpI Lipoprotein NlpI, 96.2 0.9 2E-05 41.7 17.6 175 264-464 82-265 (297)
364 COG4105 ComL DNA uptake lipopr 96.2 1.3 2.8E-05 42.3 21.4 173 343-535 46-233 (254)
365 KOG2314 Translation initiation 96.1 0.0069 1.5E-07 62.3 4.8 76 151-230 58-140 (698)
366 KOG0115 RNA-binding protein p5 96.1 0.0047 1E-07 57.1 3.3 77 151-229 31-109 (275)
367 PF13424 TPR_12: Tetratricopep 96.1 0.011 2.4E-07 45.9 4.9 26 368-393 7-32 (78)
368 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.18 3.9E-06 52.2 14.7 62 296-359 75-140 (453)
369 PF03704 BTAD: Bacterial trans 96.1 0.04 8.6E-07 49.1 9.2 71 683-754 64-139 (146)
370 KOG0543 FKBP-type peptidyl-pro 96.1 0.092 2E-06 53.0 12.3 97 331-429 257-354 (397)
371 KOG1941 Acetylcholine receptor 96.1 1.8 3.9E-05 43.1 21.9 131 298-428 45-189 (518)
372 PF04184 ST7: ST7 protein; In 96.0 0.49 1.1E-05 49.3 17.3 96 650-745 263-375 (539)
373 PF13424 TPR_12: Tetratricopep 96.0 0.014 3E-07 45.3 5.1 61 683-743 7-73 (78)
374 PF04053 Coatomer_WDAD: Coatom 96.0 0.12 2.7E-06 54.8 13.7 157 339-531 269-427 (443)
375 KOG2193 IGF-II mRNA-binding pr 96.0 0.0083 1.8E-07 59.3 4.4 75 153-238 3-80 (584)
376 KOG1941 Acetylcholine receptor 96.0 2 4.3E-05 42.8 20.5 57 441-497 127-188 (518)
377 PF10345 Cohesin_load: Cohesin 95.9 4.1 8.8E-05 46.2 40.3 165 297-462 60-251 (608)
378 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.089 1.9E-06 54.4 11.7 68 643-710 72-141 (453)
379 KOG0276 Vesicle coat complex C 95.9 0.06 1.3E-06 56.6 10.2 149 308-496 598-746 (794)
380 KOG1585 Protein required for f 95.8 1 2.2E-05 42.3 16.6 84 369-462 34-117 (308)
381 KOG0890 Protein kinase of the 95.8 4 8.6E-05 51.1 26.0 46 376-422 1459-1504(2382)
382 PF10345 Cohesin_load: Cohesin 95.7 5 0.00011 45.5 38.3 188 588-776 373-602 (608)
383 COG1729 Uncharacterized protei 95.6 0.2 4.3E-06 48.1 12.0 87 344-430 154-244 (262)
384 COG3118 Thioredoxin domain-con 95.6 1.3 2.8E-05 43.1 17.3 150 303-455 141-291 (304)
385 smart00299 CLH Clathrin heavy 95.6 0.67 1.4E-05 40.8 14.9 42 301-343 12-53 (140)
386 PF13170 DUF4003: Protein of u 95.6 2.6 5.6E-05 42.4 20.3 21 524-544 200-220 (297)
387 PF12921 ATP13: Mitochondrial 95.5 0.35 7.5E-06 41.3 11.9 54 642-695 48-102 (126)
388 PRK11906 transcriptional regul 95.4 1.4 3E-05 46.0 18.1 112 626-742 319-433 (458)
389 PF13512 TPR_18: Tetratricopep 95.4 0.47 1E-05 41.0 12.3 54 343-397 22-78 (142)
390 smart00299 CLH Clathrin heavy 95.4 1 2.2E-05 39.7 15.2 123 617-762 13-136 (140)
391 PF09205 DUF1955: Domain of un 95.4 1.4 3.1E-05 37.0 14.4 60 407-467 92-151 (161)
392 KOG2396 HAT (Half-A-TPR) repea 95.4 4.3 9.4E-05 42.5 39.4 240 489-744 300-558 (568)
393 KOG1550 Extracellular protein 95.3 6.1 0.00013 44.1 26.9 143 312-466 228-394 (552)
394 KOG2610 Uncharacterized conser 95.3 0.53 1.1E-05 46.1 13.6 155 587-744 114-275 (491)
395 PF13170 DUF4003: Protein of u 95.2 3.8 8.3E-05 41.1 20.8 130 522-653 78-224 (297)
396 KOG1456 Heterogeneous nuclear 95.2 0.03 6.5E-07 54.6 5.0 82 150-238 30-111 (494)
397 PRK14950 DNA polymerase III su 95.2 0.11 2.5E-06 57.9 10.3 9 222-230 533-541 (585)
398 KOG4555 TPR repeat-containing 95.1 0.4 8.7E-06 40.0 10.5 94 303-397 50-146 (175)
399 KOG0112 Large RNA-binding prot 95.1 0.025 5.4E-07 62.0 4.5 82 147-237 451-534 (975)
400 KOG4555 TPR repeat-containing 95.0 0.79 1.7E-05 38.3 11.8 92 339-431 51-145 (175)
401 PF04184 ST7: ST7 protein; In 94.9 2.4 5.1E-05 44.5 17.7 148 302-464 174-323 (539)
402 PF13431 TPR_17: Tetratricopep 94.9 0.04 8.6E-07 34.4 3.3 33 270-317 2-34 (34)
403 KOG1365 RNA-binding protein Fu 94.9 0.026 5.7E-07 55.2 3.6 76 152-231 281-359 (508)
404 KOG2202 U2 snRNP splicing fact 94.8 0.012 2.6E-07 54.7 1.3 61 167-231 84-145 (260)
405 PRK15319 AIDA autotransporter- 94.8 0.049 1.1E-06 65.1 6.3 7 217-223 1858-1864(2039)
406 COG1747 Uncharacterized N-term 94.8 6.4 0.00014 41.3 24.7 180 540-727 65-250 (711)
407 PF13512 TPR_18: Tetratricopep 94.7 0.86 1.9E-05 39.4 11.9 85 295-379 9-95 (142)
408 KOG0112 Large RNA-binding prot 94.6 0.01 2.2E-07 64.9 0.3 84 144-231 365-448 (975)
409 COG1729 Uncharacterized protei 94.6 0.75 1.6E-05 44.3 12.5 97 298-395 144-244 (262)
410 PF04097 Nic96: Nup93/Nic96; 94.4 7.7 0.00017 43.8 22.4 20 477-496 264-283 (613)
411 KOG0105 Alternative splicing f 94.4 0.092 2E-06 46.0 5.6 64 149-222 113-176 (241)
412 COG4649 Uncharacterized protei 94.4 2.4 5.1E-05 37.6 13.9 122 343-464 70-195 (221)
413 PRK14950 DNA polymerase III su 94.4 0.23 4.9E-06 55.6 10.3 11 219-229 496-506 (585)
414 KOG1365 RNA-binding protein Fu 94.4 0.04 8.7E-07 54.0 3.7 59 153-213 163-225 (508)
415 KOG1550 Extracellular protein 94.4 10 0.00023 42.2 29.1 177 347-537 228-428 (552)
416 KOG2416 Acinus (induces apopto 94.4 0.03 6.5E-07 58.3 2.9 95 148-251 441-541 (718)
417 PRK15180 Vi polysaccharide bio 94.3 7.5 0.00016 40.4 26.0 132 298-433 291-423 (831)
418 PF08631 SPO22: Meiosis protei 94.3 6.6 0.00014 39.4 26.6 20 724-743 254-273 (278)
419 KOG2068 MOT2 transcription fac 94.2 0.022 4.9E-07 55.4 1.6 80 152-234 78-163 (327)
420 PF08631 SPO22: Meiosis protei 94.2 6.8 0.00015 39.2 27.7 122 307-430 4-150 (278)
421 KOG3941 Intermediate in Toll s 94.2 0.35 7.7E-06 46.1 9.2 88 415-521 86-173 (406)
422 PF04910 Tcf25: Transcriptiona 94.1 8.4 0.00018 40.1 20.6 160 257-429 4-167 (360)
423 COG4785 NlpI Lipoprotein NlpI, 93.9 5.3 0.00011 37.0 17.2 65 366-431 99-163 (297)
424 COG4649 Uncharacterized protei 93.9 4 8.7E-05 36.3 14.2 126 306-431 68-197 (221)
425 KOG3941 Intermediate in Toll s 93.8 1 2.2E-05 43.1 11.5 71 486-556 87-173 (406)
426 KOG0403 Neoplastic transformat 93.8 7.7 0.00017 40.0 18.0 75 649-728 512-586 (645)
427 COG3629 DnrI DNA-binding trans 93.6 0.79 1.7E-05 44.9 10.9 79 681-760 153-236 (280)
428 KOG1586 Protein required for f 93.5 6.7 0.00015 36.8 23.4 21 518-538 166-186 (288)
429 PF13428 TPR_14: Tetratricopep 93.4 0.23 5E-06 33.2 5.0 27 369-395 4-30 (44)
430 COG3947 Response regulator con 93.3 6.7 0.00015 38.1 15.9 72 683-755 281-357 (361)
431 PRK07764 DNA polymerase III su 93.1 0.9 1.9E-05 52.5 12.2 10 175-184 578-587 (824)
432 KOG0307 Vesicle coat complex C 93.1 2.4 5.2E-05 48.7 14.8 21 303-323 1004-1024(1049)
433 KOG1985 Vesicle coat complex C 93.0 1.5 3.3E-05 48.4 12.8 7 198-204 231-237 (887)
434 KOG2063 Vacuolar assembly/sort 92.9 22 0.00047 41.2 23.4 59 299-359 310-374 (877)
435 PF04097 Nic96: Nup93/Nic96; 92.9 19 0.00042 40.7 22.1 59 301-360 116-181 (613)
436 PF10602 RPN7: 26S proteasome 92.9 1.5 3.2E-05 40.3 11.2 59 369-427 39-99 (177)
437 PF08675 RNA_bind: RNA binding 92.6 0.47 1E-05 36.0 5.9 52 153-214 11-62 (87)
438 KOG0276 Vesicle coat complex C 92.6 1 2.2E-05 47.9 10.4 149 519-707 599-747 (794)
439 COG0790 FOG: TPR repeat, SEL1 92.5 13 0.00028 37.6 24.9 150 308-466 53-221 (292)
440 PF03880 DbpA: DbpA RNA bindin 92.5 0.46 9.9E-06 36.2 6.0 59 161-231 11-74 (74)
441 PF13428 TPR_14: Tetratricopep 92.4 0.41 8.8E-06 32.0 5.1 23 722-744 7-29 (44)
442 KOG0307 Vesicle coat complex C 92.4 2.5 5.5E-05 48.5 13.9 32 327-358 993-1024(1049)
443 PF10602 RPN7: 26S proteasome 92.4 2.9 6.3E-05 38.4 12.3 98 647-744 37-141 (177)
444 PF04847 Calcipressin: Calcipr 92.2 0.47 1E-05 43.4 6.8 61 165-234 9-71 (184)
445 PF13431 TPR_17: Tetratricopep 92.0 0.2 4.3E-06 31.2 2.9 31 705-736 3-33 (34)
446 PRK11619 lytic murein transgly 92.0 26 0.00057 39.7 37.8 115 520-637 255-372 (644)
447 KOG4234 TPR repeat-containing 91.8 3.6 7.9E-05 37.5 11.5 92 303-397 102-199 (271)
448 COG3629 DnrI DNA-binding trans 91.7 1.6 3.4E-05 42.8 10.1 76 403-479 155-235 (280)
449 PF09613 HrpB1_HrpK: Bacterial 91.7 8.6 0.00019 34.1 13.6 19 691-709 54-72 (160)
450 KOG4570 Uncharacterized conser 91.7 2.8 6E-05 41.0 11.4 98 610-711 63-165 (418)
451 KOG2471 TPR repeat-containing 91.6 9.7 0.00021 39.8 15.7 44 647-692 337-380 (696)
452 PF13176 TPR_7: Tetratricopept 91.5 0.42 9.1E-06 30.2 4.1 24 369-392 2-25 (36)
453 KOG4676 Splicing factor, argin 91.3 0.31 6.8E-06 48.3 4.9 75 153-230 9-85 (479)
454 PF10309 DUF2414: Protein of u 91.3 0.86 1.9E-05 32.8 5.8 54 152-214 6-62 (62)
455 KOG2300 Uncharacterized conser 91.3 21 0.00046 37.5 34.6 175 552-731 334-540 (629)
456 KOG1985 Vesicle coat complex C 91.3 4.8 0.0001 44.8 14.1 8 223-230 238-245 (887)
457 PF07174 FAP: Fibronectin-atta 91.3 1.4 3E-05 41.7 8.7 11 151-161 161-171 (297)
458 KOG1464 COP9 signalosome, subu 91.3 14 0.00031 35.4 18.2 232 429-660 19-286 (440)
459 KOG0890 Protein kinase of the 91.2 55 0.0012 41.9 33.9 320 406-746 1388-1732(2382)
460 PF13176 TPR_7: Tetratricopept 90.8 0.58 1.3E-05 29.6 4.3 26 718-743 1-26 (36)
461 KOG4648 Uncharacterized conser 90.6 2 4.3E-05 42.4 9.4 88 375-464 106-193 (536)
462 PF02259 FAT: FAT domain; Int 90.6 24 0.00052 36.8 25.3 283 337-656 4-351 (352)
463 PRK11901 hypothetical protein; 90.3 20 0.00044 35.6 17.6 54 158-214 249-304 (327)
464 PF07035 Mic1: Colon cancer-as 90.3 13 0.00029 33.4 15.6 56 440-499 93-148 (167)
465 KOG4234 TPR repeat-containing 90.2 5.5 0.00012 36.3 11.1 90 621-711 105-198 (271)
466 KOG4570 Uncharacterized conser 90.1 3.6 7.7E-05 40.3 10.6 45 593-637 117-161 (418)
467 COG3947 Response regulator con 89.6 22 0.00047 34.8 15.9 58 475-533 283-340 (361)
468 PF15023 DUF4523: Protein of u 89.6 0.83 1.8E-05 38.6 5.2 69 152-231 87-159 (166)
469 KOG2034 Vacuolar sorting prote 89.6 43 0.00094 38.2 30.2 185 473-678 506-699 (911)
470 PF09613 HrpB1_HrpK: Bacterial 89.5 15 0.00031 32.7 13.7 52 378-430 22-73 (160)
471 COG5159 RPN6 26S proteasome re 89.5 22 0.00047 34.6 18.1 295 407-730 9-333 (421)
472 KOG4574 RNA-binding protein (c 89.3 1.1 2.4E-05 49.4 7.3 77 153-238 300-378 (1007)
473 PF06552 TOM20_plant: Plant sp 89.0 3.4 7.3E-05 37.2 8.9 79 261-362 49-138 (186)
474 PF07575 Nucleopor_Nup85: Nup8 88.9 16 0.00036 40.9 16.7 27 296-323 149-175 (566)
475 PRK09687 putative lyase; Provi 88.5 28 0.00062 34.8 28.4 81 294-380 35-119 (280)
476 KOG1925 Rac1 GTPase effector F 88.5 8.1 0.00018 40.1 12.3 164 10-173 92-328 (817)
477 PF00515 TPR_1: Tetratricopept 88.5 1.2 2.5E-05 27.5 4.4 28 717-744 2-29 (34)
478 KOG0260 RNA polymerase II, lar 88.5 16 0.00034 42.7 15.4 129 12-140 1474-1604(1605)
479 KOG1464 COP9 signalosome, subu 88.4 24 0.00053 33.9 24.1 274 483-763 39-349 (440)
480 COG2976 Uncharacterized protei 88.2 21 0.00045 32.8 17.8 177 488-679 9-192 (207)
481 PF13929 mRNA_stabil: mRNA sta 88.2 28 0.00061 34.3 16.1 170 593-765 113-292 (292)
482 PF00637 Clathrin: Region in C 88.1 0.035 7.7E-07 49.3 -4.1 128 652-798 13-142 (143)
483 PRK09687 putative lyase; Provi 87.9 31 0.00068 34.5 28.6 263 478-763 12-279 (280)
484 PF07174 FAP: Fibronectin-atta 87.9 3.5 7.6E-05 39.2 8.6 74 33-106 34-107 (297)
485 KOG0391 SNF2 family DNA-depend 87.8 5.9 0.00013 46.1 11.8 116 3-118 1817-1957(1958)
486 KOG4210 Nuclear localization s 87.8 0.32 7E-06 48.2 2.1 80 152-234 89-168 (285)
487 KOG0260 RNA polymerase II, lar 87.7 31 0.00068 40.4 17.1 152 2-153 1450-1604(1605)
488 PF02284 COX5A: Cytochrome c o 87.7 11 0.00024 30.3 9.8 88 674-762 1-90 (108)
489 PF15449 Retinal: Retinal prot 87.5 20 0.00043 41.5 15.4 156 1-156 986-1147(1287)
490 PF02259 FAT: FAT domain; Int 87.1 41 0.00089 35.0 26.7 276 406-691 3-351 (352)
491 PF00515 TPR_1: Tetratricopept 87.1 1.7 3.7E-05 26.8 4.5 33 366-398 1-33 (34)
492 PF07035 Mic1: Colon cancer-as 87.1 23 0.00049 32.0 16.3 136 456-606 14-150 (167)
493 PF11207 DUF2989: Protein of u 87.0 7.9 0.00017 35.8 10.2 84 407-491 112-198 (203)
494 KOG2062 26S proteasome regulat 86.8 58 0.0013 36.4 31.5 491 282-793 199-746 (929)
495 KOG2471 TPR repeat-containing 86.7 11 0.00024 39.4 12.1 308 449-764 30-382 (696)
496 KOG0292 Vesicle coat complex C 86.6 65 0.0014 36.8 21.9 381 300-734 624-1137(1202)
497 KOG4410 5-formyltetrahydrofola 86.6 4.6 9.9E-05 38.4 8.6 101 93-207 279-380 (396)
498 KOG4285 Mitotic phosphoprotein 86.4 34 0.00074 33.4 15.5 193 24-226 42-261 (350)
499 PF11207 DUF2989: Protein of u 86.3 5.1 0.00011 37.0 8.6 82 255-351 113-198 (203)
500 COG5187 RPN7 26S proteasome re 86.0 36 0.00078 33.2 17.0 226 318-553 60-315 (412)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-66 Score=591.99 Aligned_cols=503 Identities=19% Similarity=0.317 Sum_probs=447.3
Q ss_pred cCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 003749 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (798)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (798)
+.++|++ ++|+++|++|...+...| +...++.++..|.+.|..++|..+|+.|..
T Consensus 380 l~r~G~l---------~eAl~Lfd~M~~~gvv~~-------------~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--- 434 (1060)
T PLN03218 380 LLRDGRI---------KDCIDLLEDMEKRGLLDM-------------DKIYHAKFFKACKKQRAVKEAFRFAKLIRN--- 434 (1060)
T ss_pred HHHCcCH---------HHHHHHHHHHHhCCCCCc-------------hHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---
Confidence 4456666 889999999888777666 445667788899999999999999988864
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 003749 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (798)
Q Consensus 328 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (798)
||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.+|..+|+.+
T Consensus 435 -pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 435 -PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred -CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCcCHHHHHHHHHHHHHcC
Q 003749 408 IYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKE--CGFSPSIISYGCLINLYTKIG 485 (798)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g 485 (798)
|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. .|+.||..+|+.||.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999976 578899999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 003749 486 KVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVK 565 (798)
Q Consensus 486 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 565 (798)
++++|.++|++|.+.|+.++..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|+
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003749 566 EMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN 645 (798)
Q Consensus 566 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 645 (798)
+|.+.|..++..+|+.||.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cC-------------------ChHHHHH
Q 003749 646 EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCK----SG-------------------RMQSALA 702 (798)
Q Consensus 646 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g-------------------~~~~A~~ 702 (798)
..||+.++.+|++.|++++|.++|++|.+.|+.||..+|++|+.+|.+ ++ ..++|..
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 999999999999999999999999999999999999999999876532 21 2367889
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCccccccccccch
Q 003749 703 VTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSIPMLTK 778 (798)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 778 (798)
+|++|.+.|+.||..+|+.++.++++.+....+..+++.|...+..++..+|++||++|.+. .++|+.+...+.
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 99999999999999999999988888888999999999988888888999999999988443 357887755554
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.7e-68 Score=617.55 Aligned_cols=529 Identities=18% Similarity=0.254 Sum_probs=503.1
Q ss_pred hhhhc--cCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhh-----------------cCCCHhhHHHHH
Q 003749 243 RARWV--AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERI-----------------KKPSRREFGLMV 303 (798)
Q Consensus 243 ~~~~~--~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~li 303 (798)
...+| |+++|++ +.|.++|+++.+.|...|+.++.+|.+. ..||..+|+.++
T Consensus 124 ~n~li~~~~~~g~~---------~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll 194 (857)
T PLN03077 124 GNAMLSMFVRFGEL---------VHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL 194 (857)
T ss_pred HHHHHHHHHhCCCh---------HHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 34555 8999999 9999999999999999999999887542 258999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003749 304 NYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE 383 (798)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 383 (798)
++|+..+++..+.+++..|.+.|+.+|..+||+||.+|++.|++++|.++|++|.+ +|.++||++|.+|++.|+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~ 270 (857)
T PLN03077 195 RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECL 270 (857)
T ss_pred HHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999964 58899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 384 AADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (798)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (798)
+|+++|++|.+.|+.||..+|+.++.+|++.|+++.|.+++..|.+.|+.+|..+|+.|+.+|++.|++++|.++|++|.
T Consensus 271 eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 350 (857)
T PLN03077 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred HCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003749 464 ECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVL 543 (798)
Q Consensus 464 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 543 (798)
. +|..+|+.||.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.++..+
T Consensus 351 ~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~ 426 (857)
T PLN03077 351 T----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426 (857)
T ss_pred C----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHH
Confidence 4 689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 544 YNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVE 623 (798)
Q Consensus 544 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 623 (798)
|+.|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..+|+.++.+|++
T Consensus 427 ~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 427 ANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACAR 501 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhh
Confidence 99999999999999999999999975 4788999999999999999999999999986 588999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003749 624 KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAV 703 (798)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 703 (798)
.|.++.+.+++..|.+.|+.+|..++++||++|++.|++++|+++|+.+ .+|..+|++||.+|++.|+.++|+++
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987 57999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCccccccccccchhhhh
Q 003749 704 TKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMK-QEGVQPDVHTYTSFINACSKAGDMQVRFSIPMLTKFYLF 782 (798)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 782 (798)
|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.|+.||..+|++++++|++.|++++|.++.+.++..++
T Consensus 577 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd 656 (857)
T PLN03077 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPD 656 (857)
T ss_pred HHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCC
Confidence 9999999999999999999999999999999999999999 689999999999999999999999999999988888999
Q ss_pred hhhhh--heeecCCCCCC
Q 003749 783 SFIWF--LITMNSHKNDE 798 (798)
Q Consensus 783 ~~~w~--~~~~~~~~~~~ 798 (798)
..+|. |.+|.+|++.|
T Consensus 657 ~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 657 PAVWGALLNACRIHRHVE 674 (857)
T ss_pred HHHHHHHHHHHHHcCChH
Confidence 99996 99999998753
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.8e-65 Score=579.24 Aligned_cols=482 Identities=17% Similarity=0.265 Sum_probs=459.9
Q ss_pred CCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003749 293 KPSRREFGLMVNYYARRGDMHRARQTFENMRARGI-EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSI 371 (798)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 371 (798)
.++...|..+++.|++.|++++|+++|++|.+.|+ .++..+++.++..|.+.|.+++|+.+|+.|.+ ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 35677899999999999999999999999999985 46777888999999999999999999999974 79999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 003749 372 IVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (798)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 451 (798)
++.+|++.|++++|.++|++|.+.|..+|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003749 452 EEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKS--SGIKHNMKTYSMLINGFLKLKDWANVFAVF 529 (798)
Q Consensus 452 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 529 (798)
+++|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .++.||..+|++||.+|++.|++++|+++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999986 578999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003749 530 EDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIP 609 (798)
Q Consensus 530 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 609 (798)
+.|.+.|+.++..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 610 TVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLK 689 (798)
Q Consensus 610 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 689 (798)
+..+|+.||.+|++.|++++|.++|++|.+.++.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.|+.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----c-------------------CCHHHHHHHHHHHHHcC
Q 003749 690 ACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWAR----R-------------------GDVWEAADLMQQMKQEG 746 (798)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~g 746 (798)
+|++.|++++|.+++++|.+.|+.||..+|++|+..|.+ . +..++|+.+|++|++.|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999976432 1 23467999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCccccccccccch
Q 003749 747 VQPDVHTYTSFINACSKAGDMQVRFSIPMLTK 778 (798)
Q Consensus 747 ~~pd~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 778 (798)
+.||..||+.++..+++.+..+.+.++.+.+.
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 99999999999988888888888887765443
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.1e-64 Score=584.32 Aligned_cols=501 Identities=19% Similarity=0.309 Sum_probs=474.6
Q ss_pred hhhhhHHHHHHHHHHhcCC----ccHHHHHHH-------------HHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHH
Q 003749 260 HKEREWHRREFRKAVETQP----ENWQAVVSA-------------FERIKKPSRREFGLMVNYYARRGDMHRARQTFENM 322 (798)
Q Consensus 260 ~~~~~~a~~~f~~~~~~~~----~~~~~~~~~-------------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 322 (798)
.+..+.+..++..++.... ..++.++.. |+.+..+|..+|+.||.+|++.|++++|+++|++|
T Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M 178 (857)
T PLN03077 99 KRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRM 178 (857)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3444778888887765533 224555554 55667899999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh
Q 003749 323 RARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAI 402 (798)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 402 (798)
...|+.||..+|+.++++|++.+++..+.+++..|.+.|+.+|..+|+.|+.+|++.|++++|.++|++|.. +|..
T Consensus 179 ~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~ 254 (857)
T PLN03077 179 LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCI 254 (857)
T ss_pred HHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999974 4889
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 003749 403 IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYT 482 (798)
Q Consensus 403 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 482 (798)
+|+++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.||.+|+
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~ 334 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 003749 483 KIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562 (798)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 562 (798)
+.|++++|.++|++|. .+|..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.+
T Consensus 335 k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 410 (857)
T PLN03077 335 SLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410 (857)
T ss_pred hcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHH
Confidence 9999999999999996 368899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003749 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGI 642 (798)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 642 (798)
+++.|.+.|..++..++++|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. ++
T Consensus 411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~ 485 (857)
T PLN03077 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL 485 (857)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC
Confidence 999999999999999999999999999999999999999975 5889999999999999999999999999986 58
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003749 643 SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNIL 722 (798)
Q Consensus 643 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 722 (798)
.||..||+.++.+|++.|+++.+.+++..+.+.|+.+|..++++|+++|+++|++++|+.+|+++ .+|..+||+|
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~l 560 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNIL 560 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987 4899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCccccccccccch
Q 003749 723 IDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSIPMLTK 778 (798)
Q Consensus 723 ~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 778 (798)
|.+|++.|+.++|+++|++|.+.|+.||..||+.|+.+|++.|++++|.++...++
T Consensus 561 I~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 561 LTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999976665
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.8e-60 Score=538.29 Aligned_cols=469 Identities=17% Similarity=0.260 Sum_probs=416.7
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARG-IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (798)
+..+|+.+|..|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.+|..+|+.|+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 33456778888999999999999999998764 67899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 003749 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEE 453 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (798)
.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|++++|.++|++|.+.|+.++..+|+.++.+|...|..+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999999999999864 5888999999999999999999999999999998999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 454 KCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVM 533 (798)
Q Consensus 454 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (798)
.+.+++..+.+.|+.+|..+|+.||++|++.|++++|.++|++|.. +|..+|+.||.+|++.|++++|+++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999989999999999999999999999999998864 588899999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003749 534 RDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHT 613 (798)
Q Consensus 534 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 613 (798)
+.|+.||..||+.++.+|++.|++++|.+++.+|.+.|..+|..++++|+++|++.|++++|.++|++|.+ +|..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeee
Confidence 99999999999999999999999999999999999999888999999999999999999999999998864 58889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 003749 614 FNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRN-EGLELDVFTYEALLKACC 692 (798)
Q Consensus 614 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 692 (798)
||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|.+ .|+.|+..+|+.++++|+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999975 588899999999999999
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCccccc
Q 003749 693 KSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD-VHTYTSFINACSKAGDMQVRF 771 (798)
Q Consensus 693 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~l~~~~~~~g~~~~a~ 771 (798)
+.|++++|.+++++| .+.|+..+|+.|+.+|...|+++.|.++++++.+ +.|+ ..+|..|++.|++.|++++|.
T Consensus 474 r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 474 REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred hcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 999999999988766 3578899999999999999999999999998874 4554 568999999999999999999
Q ss_pred cccccchhh
Q 003749 772 SIPMLTKFY 780 (798)
Q Consensus 772 ~~~~~~~~~ 780 (798)
++...++..
T Consensus 549 ~v~~~m~~~ 557 (697)
T PLN03081 549 KVVETLKRK 557 (697)
T ss_pred HHHHHHHHc
Confidence 987766643
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.2e-59 Score=532.87 Aligned_cols=463 Identities=19% Similarity=0.282 Sum_probs=439.4
Q ss_pred cCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 003749 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (798)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (798)
|.++|+. ++|.++|+.+....+. .|+..+|+.++.+|++.++++.|.+++..|.+.|+
T Consensus 97 l~~~g~~---------~~Al~~f~~m~~~~~~-------------~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~ 154 (697)
T PLN03081 97 LVACGRH---------REALELFEILEAGCPF-------------TLPASTYDALVEACIALKSIRCVKAVYWHVESSGF 154 (697)
T ss_pred HHcCCCH---------HHHHHHHHHHHhcCCC-------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 4455666 8999999988654332 36889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 003749 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (798)
Q Consensus 328 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (798)
.||..+||.|+.+|++.|++++|+++|++|.+ +|.++|++++.+|++.|++++|+++|++|.+.|..++..+|..+
T Consensus 155 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 230 (697)
T PLN03081 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM 230 (697)
T ss_pred CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHH
Confidence 99999999999999999999999999999964 69999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH
Q 003749 408 IYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKV 487 (798)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 487 (798)
+.+|++.|+.+.+.+++..+.+.|+.+|..+|+.|+++|++.|++++|.++|++|.+ +|.++||.||.+|++.|+.
T Consensus 231 l~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~ 306 (697)
T PLN03081 231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYS 306 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999999999999999999999999964 5999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 003749 488 SKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEM 567 (798)
Q Consensus 488 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 567 (798)
++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.+|..+|+.|+.+|++.|++++|.++|++|
T Consensus 307 ~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCH
Q 003749 568 QKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTL-AGISPNE 646 (798)
Q Consensus 568 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~~~~p~~ 646 (798)
.+ +|..+|++||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .++.|+.
T Consensus 387 ~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 387 PR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred CC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 64 589999999999999999999999999999999999999999999999999999999999999986 5899999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (798)
.+|++++++|++.|++++|.+++++| +..|+..+|++|+.+|...|+++.|..+++++.+.+ +.+..+|+.|++.|
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y 538 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLY 538 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHH
Confidence 99999999999999999999998765 678999999999999999999999999999998765 44678999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCC
Q 003749 727 ARRGDVWEAADLMQQMKQEGVQ 748 (798)
Q Consensus 727 ~~~g~~~~A~~~~~~m~~~g~~ 748 (798)
++.|++++|.+++++|++.|+.
T Consensus 539 ~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 539 NSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999975
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1e-30 Score=313.36 Aligned_cols=505 Identities=14% Similarity=0.096 Sum_probs=431.4
Q ss_pred ccCCCccccccchhhhhhHHHHHHHHHHhcCCccH---HH-------------HHHHHHhhc---CCCHhhHHHHHHHHH
Q 003749 247 VAGNNGEEFRSTWHKEREWHRREFRKAVETQPENW---QA-------------VVSAFERIK---KPSRREFGLMVNYYA 307 (798)
Q Consensus 247 ~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~---~~-------------~~~~~~~~~---~~~~~~~~~li~~~~ 307 (798)
+|.+.|+. ++|.+.|++++..++.+. .. .+..|.+.. ..+......++..|.
T Consensus 372 ~~~~~g~~---------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 442 (899)
T TIGR02917 372 AYLALGDF---------EKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYL 442 (899)
T ss_pred HHHHCCCH---------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHH
Confidence 37778887 899999999988877532 11 122222211 123345566788899
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003749 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADH 387 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (798)
+.|++++|+.+++.+.... ..+..+++.+...|.+.|++++|.++|+++.+.. +.+...+..++..+...|++++|++
T Consensus 443 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998863 5577889999999999999999999999998864 3467788899999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003749 388 WFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (798)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (798)
.|+++...+. .+..++..++..+.+.|++++|...++++.+.+ +.+...+..++..|...|++++|+.+++++.+..
T Consensus 521 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 521 RFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 9999988754 377888999999999999999999999998875 4567788899999999999999999999998754
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 468 SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNI 547 (798)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 547 (798)
..+..+|..+..+|...|++++|+..|+++.+.. +.+...+..+..+|.+.|++++|..+|+++.+.... +..++..+
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 675 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGL 675 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHH
Confidence 3477899999999999999999999999998764 446778888999999999999999999999887544 67889999
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003749 548 IRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQM 627 (798)
Q Consensus 548 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 627 (798)
+..+...|++++|..+++.+...... +...+..+...+.+.|++++|...|+.+...+. +..++..++.++.+.|++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCH
Confidence 99999999999999999999887643 667788888999999999999999999988653 447777889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003749 628 EKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEM 707 (798)
Q Consensus 628 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (798)
++|.+.++++.+.. +.+...+..+...|...|++++|.++|+++.+.... +..+++.++..+.+.|+ .+|+.+++++
T Consensus 753 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 753 AEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 99999999998864 567888999999999999999999999999988654 78899999999999999 8899999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCccccccccc
Q 003749 708 SAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSIPM 775 (798)
Q Consensus 708 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~~~ 775 (798)
.+.. +.+..++..++.++...|++++|+++++++++.+.. |..++..++.++.+.|+.++|.++..
T Consensus 830 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 830 LKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELD 895 (899)
T ss_pred HhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8865 567778899999999999999999999999997644 88999999999999999999988744
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.4e-30 Score=307.19 Aligned_cols=504 Identities=14% Similarity=0.099 Sum_probs=392.2
Q ss_pred ccCCCccccccchhhhhhHHHHHHHHHHhcCCccH---HHH-------------HHHHHhh---cCCCHhhHHHHHHHHH
Q 003749 247 VAGNNGEEFRSTWHKEREWHRREFRKAVETQPENW---QAV-------------VSAFERI---KKPSRREFGLMVNYYA 307 (798)
Q Consensus 247 ~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~---~~~-------------~~~~~~~---~~~~~~~~~~li~~~~ 307 (798)
++.+.|+. ++|...|.+++..++.+. ..+ +..|.+. ...+...+..+...+.
T Consensus 338 ~~~~~g~~---------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 408 (899)
T TIGR02917 338 IQLRLGRV---------DEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKL 408 (899)
T ss_pred HHHHCCCH---------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 37778887 899999999988877532 222 2222222 1224556667777777
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003749 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADH 387 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (798)
..|++++|++.|+.+.+.. .........++..|.+.|++++|+.+++++.+. .+.+..+|..++..|...|++++|++
T Consensus 409 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 409 SQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred hCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 8888888888888887764 223445566777788888888888888888765 34467788888888888888888888
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003749 388 WFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (798)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (798)
.|+++.+.+. .+...+..++..+...|++++|.+.++++.+.+ +.+..++..+...+...|+.++|..+|+++.+.+.
T Consensus 487 ~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 564 (899)
T TIGR02917 487 AFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP 564 (899)
T ss_pred HHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 8888877643 356677778888888888888888888888764 44677888888888888888888888888877643
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 468 SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNI 547 (798)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 547 (798)
.+...+..++..|.+.|++++|+.+++++.+.. +.+...|..+..+|...|++++|...|+++.+.... +...+..+
T Consensus 565 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 641 (899)
T TIGR02917 565 -QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLL 641 (899)
T ss_pred -cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 356677788888888888888888888887653 456778888888888888899988888888876543 56677888
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003749 548 IRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQM 627 (798)
Q Consensus 548 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 627 (798)
..++...|++++|..+|+++...... +..++..++..+...|++++|.++++.+.+... .+...+..+...+...|++
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCH
Confidence 88888888899998888888876533 567788888888888899999888888887654 3677778888888888999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003749 628 EKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEM 707 (798)
Q Consensus 628 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (798)
++|++.|+++...+ |+..++..++.++.+.|++++|.+.+.++.+.... +...+..+...|.+.|++++|..+|+++
T Consensus 720 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 720 PAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 99999998888764 44567777888888899999999998888877543 7788888888888899999999999988
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCcccccccc
Q 003749 708 SAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSIP 774 (798)
Q Consensus 708 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~~ 774 (798)
.+.. +.+..+++.+++.+...|+ .+|+.+++++.+.. .-+..++..+...+...|++++|.++.
T Consensus 797 ~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~ 860 (899)
T TIGR02917 797 VKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLL 860 (899)
T ss_pred HHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8775 6678888888999988888 78999999888752 235667788888889999988888873
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=8.9e-23 Score=244.34 Aligned_cols=511 Identities=11% Similarity=0.072 Sum_probs=334.4
Q ss_pred hhccCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHH-HHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 003749 245 RWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVV-SAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMR 323 (798)
Q Consensus 245 ~~~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 323 (798)
..++...|+. ++|.+.++++.+.+|.+..... ...-....++......+...+...|++++|++.|+.+.
T Consensus 69 ~~~~l~~g~~---------~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l 139 (1157)
T PRK11447 69 FRLLLRQGDS---------DGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLF 139 (1157)
T ss_pred HHHHHhCCCH---------HHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHc
Confidence 3345666777 9999999999999998643211 11112233444445556667778888888888888887
Q ss_pred HCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----
Q 003749 324 ARGIEPTLHV-YTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT---- 398 (798)
Q Consensus 324 ~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---- 398 (798)
+.+ .++... ...+.......|++++|++.|+++.+.. +-+...+..+...+...|++++|+..|+++......
T Consensus 140 ~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~a 217 (1157)
T PRK11447 140 NGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAA 217 (1157)
T ss_pred cCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHH
Confidence 653 333221 1111122234578888888888888763 336677778888888888888888888876543110
Q ss_pred ----------------------------CChhh---------------------HHHHHHHHHhcCChHHHHHHHHHHHH
Q 003749 399 ----------------------------LNAII---------------------YGNIIYAQCQTRNMERAEALVRDMEE 429 (798)
Q Consensus 399 ----------------------------~~~~~---------------------~~~l~~~~~~~g~~~~A~~~~~~m~~ 429 (798)
++... ...+...+...|++++|+..|++.++
T Consensus 218 a~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~ 297 (1157)
T PRK11447 218 AQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR 297 (1157)
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00000 00123445677888888888888887
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHH------------HHHHHHHHHcCCHHHHHHHHHH
Q 003749 430 EGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSP-SIISY------------GCLINLYTKIGKVSKALEVSKV 496 (798)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~------------~~li~~~~~~g~~~~A~~~~~~ 496 (798)
.. +.+..++..|..+|.+.|++++|+..|++..+..... +...| ..+...+.+.|++++|+..|++
T Consensus 298 ~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 298 AN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 64 3467778888888888888888888888877653221 11111 1223456778888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH------------------------------
Q 003749 497 MKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNN------------------------------ 546 (798)
Q Consensus 497 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~------------------------------ 546 (798)
+.+.. +.+...+..+..+|...|++++|++.|+++.+.... +...+..
T Consensus 377 Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 377 ARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHH
Confidence 87764 335566667778888888888888888887765433 2222222
Q ss_pred ------------HHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003749 547 ------------IIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTF 614 (798)
Q Consensus 547 ------------li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 614 (798)
+...+...|++++|+..|++..+.... +...+..+...|.+.|++++|+..|+++.+.... +...+
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~ 532 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQV 532 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHH
Confidence 233445667888888888887776543 4455666777788888888888888887764332 33333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC---------------------------------------CCCCCHHHHHHHHHH
Q 003749 615 NALILGLVEKRQMEKAIEILDEMTLA---------------------------------------GISPNEHTYTTIMHG 655 (798)
Q Consensus 615 ~~li~~~~~~~~~~~A~~~~~~m~~~---------------------------------------~~~p~~~t~~~li~~ 655 (798)
..+...+...++.++|+..++.+... ..+.+...+..+...
T Consensus 533 ~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~ 612 (1157)
T PRK11447 533 YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADW 612 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHH
Confidence 33322333344444444443322100 013344556677788
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003749 656 YASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEA 735 (798)
Q Consensus 656 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 735 (798)
+.+.|++++|++.|+++++.... +...+..++.+|...|++++|+..++.+.+.. +.+...+..+..++...|++++|
T Consensus 613 ~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA 690 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAA 690 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHH
Confidence 88888889999888888887544 67788888888888899999998888877654 44566777788888888999999
Q ss_pred HHHHHHHHHcCCC--C---CHHHHHHHHHHHHHcCCccccccc
Q 003749 736 ADLMQQMKQEGVQ--P---DVHTYTSFINACSKAGDMQVRFSI 773 (798)
Q Consensus 736 ~~~~~~m~~~g~~--p---d~~~~~~l~~~~~~~g~~~~a~~~ 773 (798)
.+++++++...-. + +...+..+...+...|+.++|...
T Consensus 691 ~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 691 QRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred HHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9998888764211 1 235666777888888888888777
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=7.1e-23 Score=245.22 Aligned_cols=487 Identities=11% Similarity=0.033 Sum_probs=355.2
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---------
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVY--------- 334 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------- 334 (798)
+.|.+.+.+++..+|. ++..+..++..+.+.|+.++|.+.++++.+.. +.+...+
T Consensus 45 d~a~~~l~kl~~~~p~---------------~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 45 DLVRQSLYRLELIDPN---------------NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHHHccCCC---------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhc
Confidence 8899999999999997 77778889999999999999999999999984 2232222
Q ss_pred -------HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 003749 335 -------TNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLV-TYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGN 406 (798)
Q Consensus 335 -------~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 406 (798)
..+...+...|++++|++.|+++.+.+ +++.. ....+.......|++++|++.|+++...... +...+..
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~ 186 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNT 186 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 334457889999999999999999764 33332 2222222233569999999999999988543 7778889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC--------------------------------CChh-----------------
Q 003749 407 IIYAQCQTRNMERAEALVRDMEEEGID--------------------------------APID----------------- 437 (798)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~m~~~~~~--------------------------------~~~~----------------- 437 (798)
+..++...|+.++|+++++++.+.... ++..
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 999999999999999999988653210 0000
Q ss_pred ----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH---
Q 003749 438 ----IYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKH-NMKTY--- 509 (798)
Q Consensus 438 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~--- 509 (798)
....+...+...|++++|+..|++.++.... +...+..|..+|.+.|++++|+..|++..+..... ....|
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 0011245567889999999999999986432 77889999999999999999999999998764221 11112
Q ss_pred ---------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHH
Q 003749 510 ---------SMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFM 580 (798)
Q Consensus 510 ---------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 580 (798)
..+...+.+.|++++|+..|+++++.... +...+..+..++...|++++|++.|+++.+.... +...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 12245677899999999999999987554 6677888999999999999999999999876432 222222
Q ss_pred HH------------------------------------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 581 PI------------------------------------------IHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALI 618 (798)
Q Consensus 581 ~l------------------------------------------i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li 618 (798)
.+ ...+...|++++|+..|+++.+.... +...+..+.
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA 502 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLA 502 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 22 23345678888888888888876543 566777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----------------------
Q 003749 619 LGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE----------------------- 675 (798)
Q Consensus 619 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~----------------------- 675 (798)
..|.+.|++++|+..++++.+.. +.+...+..+...+...++.++|+..++.+...
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 88888899999998888887653 223333333333344445555554444332110
Q ss_pred ----------------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003749 676 ----------------GLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLM 739 (798)
Q Consensus 676 ----------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 739 (798)
....+...+..+...+.+.|++++|+..++++.+.. +.+...+..++.+|...|++++|++.+
T Consensus 582 ~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 012244566777888888899999999999888775 567788888899999999999999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHHcCCcccccccccc
Q 003749 740 QQMKQEGVQP-DVHTYTSFINACSKAGDMQVRFSIPML 776 (798)
Q Consensus 740 ~~m~~~g~~p-d~~~~~~l~~~~~~~g~~~~a~~~~~~ 776 (798)
+...+. .| +..++..+..++...|+.++|.++...
T Consensus 661 ~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 661 AKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 887753 33 455677788888888998888877443
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=1.6e-23 Score=209.99 Aligned_cols=480 Identities=13% Similarity=0.120 Sum_probs=383.6
Q ss_pred HHHHHHHhcCCc--cHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 003749 268 REFRKAVETQPE--NWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR 345 (798)
Q Consensus 268 ~~f~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 345 (798)
..|...++.++. .-+.+++.|..-..-+ .....|..-..+.|++.+|.+.....-+++ ..+......+-..+.+..
T Consensus 19 ~~~~~~ld~~~~s~~s~~v~qq~~~t~~~~-~~~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~ 96 (966)
T KOG4626|consen 19 EAFSRKLDQSVSSSGSSSVLQQFNKTHEGS-DDRLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGS 96 (966)
T ss_pred HHHHHHhccCcccccchHHHHHhccCCccc-hhHHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhccc
Confidence 555566655443 2456666665443322 224566777789999999999887776664 333444444456677777
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 003749 346 DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVR 425 (798)
Q Consensus 346 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 425 (798)
+++....--...++.. +--.++|..+...+...|++++|+.+|+.+++.... ....|..+..++...|+.+.|.+.|.
T Consensus 97 r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~ 174 (966)
T KOG4626|consen 97 RLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFF 174 (966)
T ss_pred chhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHH
Confidence 7777666555555543 336789999999999999999999999999998544 78899999999999999999999999
Q ss_pred HHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003749 426 DMEEEGIDAP-IDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKH 504 (798)
Q Consensus 426 ~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 504 (798)
+.++.+ |+ ....+.+.......|++++|...|.+..+.... =.+.|..|...+-..|+...|++.|++..+. .|
T Consensus 175 ~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP 249 (966)
T KOG4626|consen 175 EALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DP 249 (966)
T ss_pred HHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CC
Confidence 999874 33 445566777778899999999999998885321 2568999999999999999999999999885 44
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHH
Q 003749 505 N-MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPII 583 (798)
Q Consensus 505 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 583 (798)
+ ...|-.|...|...+.++.|+..|.+.....+. ..+.+..|...|...|.++-|+..|++.++.... -...|+.|.
T Consensus 250 ~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~Nla 327 (966)
T KOG4626|consen 250 NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLA 327 (966)
T ss_pred cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHH
Confidence 4 457888999999999999999999998876443 5678888999999999999999999999987644 457899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCh
Q 003749 584 HGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN-EHTYTTIMHGYASLGDT 662 (798)
Q Consensus 584 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~ 662 (798)
.++...|++.+|.+.|++.+..... .....+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|++
T Consensus 328 nALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccH
Confidence 9999999999999999999987543 6788899999999999999999999998875 343 46789999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003749 663 GKAFEYFTKLRNEGLELD-VFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQ 741 (798)
Q Consensus 663 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (798)
++|+..|+++++.. |+ ...|+.+...|...|+.+.|...+.+++..+ +-=....+.|...|..+|++.+|+.-+++
T Consensus 405 ~~Ai~~YkealrI~--P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~ 481 (966)
T KOG4626|consen 405 DDAIMCYKEALRIK--PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRT 481 (966)
T ss_pred HHHHHHHHHHHhcC--chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHH
Confidence 99999999998754 44 6789999999999999999999999998865 33456889999999999999999999999
Q ss_pred HHHcCCCCCH-HHHHHHHHHHHHcCC
Q 003749 742 MKQEGVQPDV-HTYTSFINACSKAGD 766 (798)
Q Consensus 742 m~~~g~~pd~-~~~~~l~~~~~~~g~ 766 (798)
.+. ++||. ..+-.++.++.-..+
T Consensus 482 aLk--lkPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 482 ALK--LKPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred HHc--cCCCCchhhhHHHHHHHHHhc
Confidence 986 67773 445555544444443
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.2e-22 Score=203.74 Aligned_cols=432 Identities=13% Similarity=0.099 Sum_probs=259.2
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
++|.+-.+-+.+.|+.+ ....-.+-.++.+..+++.....-...++.. .--..+|..+.+.+-.
T Consensus 65 ~~a~~h~nmv~~~d~t~---------------~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 65 KQAEKHCNMVGQEDPTN---------------TERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHhHhhccCCCc---------------ccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 66776666666666542 1122222334444444444443333333331 2344556666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 003749 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEAL 423 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 423 (798)
.|++++|+.+++.+++... -....|..+..++...|+.+.|...|.+.++.+.. .......+...+-..|++++|...
T Consensus 129 rg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alqlnP~-l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD-LYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc-hhhhhcchhHHHHhhcccchhHHH
Confidence 6666666666666666432 14556666666666666666666666666554221 222333344555556666666666
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003749 424 VRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS-IISYGCLINLYTKIGKVSKALEVSKVMKSSGI 502 (798)
Q Consensus 424 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 502 (798)
+.+.++.. +--..+|+.|...+...|+...|+..|++.... +|+ ...|..|...|...+.+++|+..|.+....
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 66666543 223455666666666666666666666666653 233 345666666666666666666666666553
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHH
Q 003749 503 KH-NMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMP 581 (798)
Q Consensus 503 ~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 581 (798)
.| ..+.+..|...|...|+++-|+..|++.++..+. -...|+.|..++-..|+..+|...|.+.+..... .....+.
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~N 359 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNN 359 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHH
Confidence 23 3445555666666667777777777766664333 3456777777777777777777777776665432 4456666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 003749 582 IIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN-EHTYTTIMHGYASLG 660 (798)
Q Consensus 582 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g 660 (798)
|...|.+.|.+++|..+|....+.... -...+|.|...|-+.|++++|+..+++.++. .|+ ...|+.+...|-..|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhh
Confidence 777777777777777777776663221 2455677777777777777777777777653 444 356777777777777
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 003749 661 DTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRN-TFVYNILIDGW 726 (798)
Q Consensus 661 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 726 (798)
+.+.|+..+.+++..+.. -...++.|...|...|++.+|+.-++..++.+ || ...|..++.++
T Consensus 437 ~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklk--PDfpdA~cNllh~l 500 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLK--PDFPDAYCNLLHCL 500 (966)
T ss_pred hHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccC--CCCchhhhHHHHHH
Confidence 777777777777765432 35566777777777777777777777777654 33 33444444443
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=8.2e-23 Score=218.54 Aligned_cols=327 Identities=14% Similarity=0.166 Sum_probs=235.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 003749 444 DGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN---MKTYSMLINGFLKLK 520 (798)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~ 520 (798)
..+...|++++|+..|.++.+.+. .+..++..+...+...|++++|..+++.+.......+ ...+..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 344455566666666666655422 1344556666666666666666666666655321111 234555666666667
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcCCHHHHH
Q 003749 521 DWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS----RTFMPIIHGFARAGEMKRAL 596 (798)
Q Consensus 521 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~ 596 (798)
++++|..+|+++.+... .+..++..++.++.+.|++++|.+.++.+.+.+..... ..+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 77777777766665422 24556666777777777777777777776665432211 13445666778889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 597 EIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG 676 (798)
Q Consensus 597 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~ 676 (798)
.+|+++.+.... +...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|...|++++|...++++.+..
T Consensus 201 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999888875432 5667778888899999999999999998876422234678889999999999999999999998874
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHH
Q 003749 677 LELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWAR---RGDVWEAADLMQQMKQEGVQPDVHT 753 (798)
Q Consensus 677 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~~ 753 (798)
|+...+..++..+.+.|++++|..+++++.+.. |+...++.++..+.. .|+.++++.++++|.+.++.+|..
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~- 354 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRRH--PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR- 354 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC-
Confidence 455667889999999999999999999998864 888899988888775 568999999999999988888776
Q ss_pred HHHHHHHHHHcCCccccccccccchhhhhhhhhhheeecCCCC
Q 003749 754 YTSFINACSKAGDMQVRFSIPMLTKFYLFSFIWFLITMNSHKN 796 (798)
Q Consensus 754 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~w~~~~~~~~~~ 796 (798)
..|.+.| +......|.|+.|.+|+-
T Consensus 355 -----~~c~~cg-------------~~~~~~~~~c~~c~~~~~ 379 (389)
T PRK11788 355 -----YRCRNCG-------------FTARTLYWHCPSCKAWET 379 (389)
T ss_pred -----EECCCCC-------------CCCccceeECcCCCCccC
Confidence 5588888 556666677999999974
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=2.2e-20 Score=210.08 Aligned_cols=431 Identities=10% Similarity=-0.025 Sum_probs=304.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (798)
.+..+.+.|.+.|++++|+..|+++++. .|+...|..+..+|.+.|++++|++.+++.++.+ +.+...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3556788899999999999999999986 6788899999999999999999999999999874 336788999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 003749 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLI 457 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 457 (798)
..|++++|+..|..+...+...+.. ...++..+.. ..+........+.. +.+...+..+...+ ..........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchh
Confidence 9999999999998776653322222 1122221111 22333333333332 22233333333322 2111111111
Q ss_pred HHHHHHHCCCCcC-HHHHHHHHHH---HHHcCCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003749 458 VFERLKECGFSPS-IISYGCLINL---YTKIGKVSKALEVSKVMKSSG-I-KHNMKTYSMLINGFLKLKDWANVFAVFED 531 (798)
Q Consensus 458 ~~~~~~~~~~~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~-~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 531 (798)
.+.+..+. .++ ...+..+... ....+++++|++.|+++.+.+ . ......|..+...+...|++++|+..|++
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12211111 111 0111111111 123468889999999988764 1 22455677788888889999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003749 532 VMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTV 611 (798)
Q Consensus 532 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 611 (798)
.++.... +...|..+...+...|++++|+..|+++...... +...|..+...+...|++++|+..|++.++.... +.
T Consensus 357 al~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~ 433 (615)
T TIGR00990 357 SIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FI 433 (615)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CH
Confidence 8876443 4667888888889999999999999998877543 5677888888899999999999999999886543 56
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH------HHH
Q 003749 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVF------TYE 685 (798)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~ 685 (798)
..+..+..++.+.|++++|+..|++.++.. +.+...|+.+..++...|++++|++.|++.++.....+.. .++
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 777788888899999999999999888753 4456788888899999999999999999988764331111 122
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003749 686 ALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (798)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (798)
..+..+...|++++|..++++....+ +.+...+..|+.++.+.|++++|+++|++..+.
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 22233344689999999999988765 455667888999999999999999999998764
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=1.4e-19 Score=206.42 Aligned_cols=488 Identities=12% Similarity=0.051 Sum_probs=297.9
Q ss_pred hhhHHHHhhhhccCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHH
Q 003749 236 LKNKAEVRARWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRA 315 (798)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 315 (798)
+....++.....+...|+. ++|+..|+++++.+|. +...+..|...|.+.|++++|
T Consensus 42 ~~~~~~f~~a~~~~~~Gd~---------~~A~~~l~~Al~~dP~---------------n~~~~~~LA~~yl~~g~~~~A 97 (987)
T PRK09782 42 FVIYPRLDKALKAQKNNDE---------ATAIREFEYIHQQVPD---------------NIPLTLYLAEAYRHFGHDDRA 97 (987)
T ss_pred HHHHHHHHHHHHHHhCCCH---------HHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHCCCHHHH
Confidence 3333444444446666776 8999999999999998 667778899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------HHhcCCHHHHHH
Q 003749 316 RQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG--------FAKMGNAEAADH 387 (798)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~--------~~~~g~~~~A~~ 387 (798)
+..+++..+. .|+...|..++..+ +++++|..+++++.+.. +-+..++..+... |.+.++..++++
T Consensus 98 ~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~ 171 (987)
T PRK09782 98 RLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN 171 (987)
T ss_pred HHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH
Confidence 9999999987 45555554444333 88899999999998874 3356666666665 665544444444
Q ss_pred HHHHHHhcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHC
Q 003749 388 WFEEAKERHATLNAI-IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI-IGNEEKCLIVFERLKEC 465 (798)
Q Consensus 388 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~ 465 (798)
.......++.. ....+..+|.+.|++++|++++.++.+.+ ..+......|..+|.. .++ +++..++...
T Consensus 172 ----lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~--- 242 (987)
T PRK09782 172 ----DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG--- 242 (987)
T ss_pred ----HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh---
Confidence 22222232333 34444888888999999999999988876 3455556677777777 366 7777775532
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHH--HHH----------------------------HHH
Q 003749 466 GFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIK-HNMKT--YSM----------------------------LIN 514 (798)
Q Consensus 466 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~--~~~----------------------------ll~ 514 (798)
++-|...+..++..|.+.|+.++|.++++++...... |...+ |+. ++.
T Consensus 243 -lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (987)
T PRK09782 243 -IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLP 321 (987)
T ss_pred -cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHH
Confidence 2347777888888888888888888777766433111 11111 000 011
Q ss_pred HHH---------------------------------------------------------------hcCCHHHHHHHHHH
Q 003749 515 GFL---------------------------------------------------------------KLKDWANVFAVFED 531 (798)
Q Consensus 515 ~~~---------------------------------------------------------------~~~~~~~a~~~~~~ 531 (798)
.+. +.|+.++|.++|+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~ 401 (987)
T PRK09782 322 VLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQ 401 (987)
T ss_pred HHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 111 22344444444443
Q ss_pred HHHc-C-CCCCHHHHHHHHHHHHcC-------------------------------------------------------
Q 003749 532 VMRD-G-LKPDVVLYNNIIRAFCGM------------------------------------------------------- 554 (798)
Q Consensus 532 ~~~~-g-~~~~~~~~~~li~~~~~~------------------------------------------------------- 554 (798)
.... + -..+....+.|+..|.+.
T Consensus 402 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~ 481 (987)
T PRK09782 402 RYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWN 481 (987)
T ss_pred hcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHH
Confidence 3221 0 001112222333333332
Q ss_pred --------CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003749 555 --------GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQ 626 (798)
Q Consensus 555 --------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 626 (798)
++.++|+..|.+..... |+......+...+.+.|++++|...|+++... .++...+..+..++.+.|+
T Consensus 482 ~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd 557 (987)
T PRK09782 482 RLAKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGN 557 (987)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCC
Confidence 34444555444444332 23222222333334666777777766665443 2233344455556666777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003749 627 MEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKE 706 (798)
Q Consensus 627 ~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 706 (798)
.++|..++++.++.. ..+...+..+...+...|++++|...++++++.. |+...+..+..++.+.|++++|+..+++
T Consensus 558 ~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~ 634 (987)
T PRK09782 558 GAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRA 634 (987)
T ss_pred HHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777666543 2222233333334445577777777777777654 3566777777777777777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCccccccc
Q 003749 707 MSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQP-DVHTYTSFINACSKAGDMQVRFSI 773 (798)
Q Consensus 707 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~l~~~~~~~g~~~~a~~~ 773 (798)
..... +.+...++.+..++...|++++|+.++++..+. .| +...+..+..++...|+.++|...
T Consensus 635 AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 635 ALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77765 556667777777777777777777777777764 33 456677777777777777766654
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.2e-18 Score=196.19 Aligned_cols=425 Identities=13% Similarity=0.005 Sum_probs=304.2
Q ss_pred cCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 003749 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (798)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (798)
|.+.|+. +.|++.|.+++..+|. ...|..+..+|...|++++|++.++..++..
T Consensus 137 ~~~~~~~---------~~Ai~~y~~al~~~p~----------------~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~- 190 (615)
T TIGR00990 137 AYRNKDF---------NKAIKLYSKAIECKPD----------------PVYYSNRAACHNALGDWEKVVEDTTAALELD- 190 (615)
T ss_pred HHHcCCH---------HHHHHHHHHHHhcCCc----------------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-
Confidence 5566776 9999999999988773 3467888999999999999999999999974
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 003749 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (798)
Q Consensus 328 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (798)
+.+...|..+..+|...|++++|+..|..+...+-. +......++..+.+ ..+........+... .+...+..+
T Consensus 191 p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~ 264 (615)
T TIGR00990 191 PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFV 264 (615)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHH
Confidence 446678999999999999999999999877654311 22222222222211 223333333333322 122333333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH---HhcCCHHHHHHHHHHHHHCC-CCc-CHHHHHHHHHHHH
Q 003749 408 IYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGY---TIIGNEEKCLIVFERLKECG-FSP-SIISYGCLINLYT 482 (798)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~-~~~-~~~~~~~li~~~~ 482 (798)
.. |............+.+..+.... ....+..+...+ ...+++++|++.|++..+.+ ..+ +...|+.+..++.
T Consensus 265 ~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~ 342 (615)
T TIGR00990 265 GN-YLQSFRPKPRPAGLEDSNELDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKC 342 (615)
T ss_pred HH-HHHHccCCcchhhhhcccccccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence 22 22221222222222221111100 011112221111 33578999999999998764 223 4567888889999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 003749 483 KIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562 (798)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 562 (798)
..|++++|+..|++.++.. +.+...|..+...+...|++++|+..|+++++.... +..+|..+...+...|++++|+.
T Consensus 343 ~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~ 420 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGK 420 (615)
T ss_pred HcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998863 234668888889999999999999999999887554 67889999999999999999999
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003749 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGI 642 (798)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 642 (798)
.|++.+..... +...+..+..++.+.|++++|+..|++..+.... +...++.+..++...|++++|++.|++.++...
T Consensus 421 ~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 421 DYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 99999887643 5667778888999999999999999999876433 678899999999999999999999999887532
Q ss_pred CCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003749 643 SPNEH------TYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (798)
Q Consensus 643 ~p~~~------t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (798)
..+.. .++..+..+...|++++|.++++++++.... +...+..+..++...|++++|..+|++..+..
T Consensus 499 ~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 499 ETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred ccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 21111 1222233344579999999999999887643 55678999999999999999999999998753
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=9.1e-19 Score=185.98 Aligned_cols=488 Identities=13% Similarity=0.104 Sum_probs=363.4
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHH--H--------------h------hcCCCHhhHHHHHHHHHHcCChHHHHHHHHH
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAF--E--------------R------IKKPSRREFGLMVNYYARRGDMHRARQTFEN 321 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~--~--------------~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (798)
+.|+..|.++++.||.+..+++... . . ...-|+...+.|.+.|.-.|++..+..+.+.
T Consensus 216 ~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 216 EKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred hhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 7899999999999997766665431 1 0 1134677788999999999999999999999
Q ss_pred HHHCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003749 322 MRARGIE--PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL 399 (798)
Q Consensus 322 ~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 399 (798)
+...-.. .-...|..+.++|-..|++++|...|.+..+..-.--+..+.-|+.+|.+.|+++.+.-.|+++.+.. +.
T Consensus 296 ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~ 374 (1018)
T KOG2002|consen 296 AIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PN 374 (1018)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cc
Confidence 9886311 12235888899999999999999999887765322114456678889999999999999999998873 44
Q ss_pred ChhhHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCcCH
Q 003749 400 NAIIYGNIIYAQCQTR----NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK----ECGFSPSI 471 (798)
Q Consensus 400 ~~~~~~~l~~~~~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~ 471 (798)
+..+...|...|...+ ..++|..++.+..+.- ..|...|..+...+....-+.. +.+|.... ..+-..-.
T Consensus 375 ~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~ 452 (1018)
T KOG2002|consen 375 NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPP 452 (1018)
T ss_pred hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCH
Confidence 6777778888887775 5577777777777653 5577888888888876665555 77776654 33444567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003749 472 ISYGCLINLYTKIGKVSKALEVSKVMKSS---GIKHNM------KTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVV 542 (798)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 542 (798)
...|.+...+...|++++|...|+..... ...++. .+--.+...+-..++++.|.+.|..+.+..+. -..
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId 531 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YID 531 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHH
Confidence 88999999999999999999999988765 122222 22333556666778999999999999886332 334
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 003749 543 LYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRS-GCIPTVHTFNALILGL 621 (798)
Q Consensus 543 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~ 621 (798)
.|-.++.+....++..+|..++++....+- .+...++.+...+.+..++..|.+-|..+.+. ...+|..+.-+|.+.|
T Consensus 532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~ 610 (1018)
T KOG2002|consen 532 AYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVY 610 (1018)
T ss_pred HHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHH
Confidence 455555444556788899999999887653 25666777777888888888888877766543 1224555555555544
Q ss_pred Hh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 622 VE------------KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLK 689 (798)
Q Consensus 622 ~~------------~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 689 (798)
.+ .+..++|+.+|.+.+... +-|...=|-+..+++..|++.+|..+|.++++.... +..+|..+.+
T Consensus 611 ~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah 688 (1018)
T KOG2002|consen 611 IQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAH 688 (1018)
T ss_pred HHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHH
Confidence 32 356788999999888764 556677788888999999999999999999987542 5568889999
Q ss_pred HHHHcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 690 ACCKSGRMQSALAVTKEMSAQK-IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFI 758 (798)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~ 758 (798)
+|..+|++..|+++|+.....- -..+..+...|..++.+.|++.+|.+.+...+..-..-..+.||..+
T Consensus 689 ~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 689 CYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 9999999999999999887543 24567789999999999999999999999888764443455666544
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.2e-18 Score=185.09 Aligned_cols=502 Identities=11% Similarity=0.110 Sum_probs=342.1
Q ss_pred hHHHHHHHHHHhcCCcc------------HH-----HHHHHHHhhcCCCHhhHHHHHHHH---H---HcCChHHHHHHHH
Q 003749 264 EWHRREFRKAVETQPEN------------WQ-----AVVSAFERIKKPSRREFGLMVNYY---A---RRGDMHRARQTFE 320 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~------------~~-----~~~~~~~~~~~~~~~~~~~li~~~---~---~~g~~~~A~~~~~ 320 (798)
-.|+..|.+++..+|.. |+ .++.+|.+.-..++...++++... . ..-.+..++.++.
T Consensus 181 ~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~ 260 (1018)
T KOG2002|consen 181 RGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQ 260 (1018)
T ss_pred HHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 78999999988888753 22 344445554433433333322211 1 1223556666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003749 321 NMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE--MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT 398 (798)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (798)
..-..+ .-|.++.+.|.+.|.-.|++..++.+..-++..-.. .-...|..++++|...|++++|...|.+.......
T Consensus 261 ~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d 339 (1018)
T KOG2002|consen 261 RAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND 339 (1018)
T ss_pred HHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC
Confidence 666554 446677778888888888888888887777664211 12345777888888888888888888877765433
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCcCHHHH
Q 003749 399 LNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG----NEEKCLIVFERLKECGFSPSIISY 474 (798)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~ 474 (798)
.-+..+.-+.+.|.+.|+++.+...|+++.+.. +.+..+...|...|...+ ..+.|..++.+..+.. ..|...|
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~ 417 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAW 417 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHH
Confidence 235556667788888888888888888887763 445666666777776664 5566777777766653 3366777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC------CH
Q 003749 475 GCLINLYTKIGKVSKALEVSKVMK----SSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD---GLKP------DV 541 (798)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~------~~ 541 (798)
-.+..++-...-+.. +.+|..+. ..+........|.+...+...|++..|...|+..... ...+ +.
T Consensus 418 l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l 496 (1018)
T KOG2002|consen 418 LELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNL 496 (1018)
T ss_pred HHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchh
Confidence 766666655544443 66655443 3444566777888888888888888888888776654 1112 22
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 542 VLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGL 621 (798)
Q Consensus 542 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 621 (798)
.+-..+...+...++++.|.++|..+.+..+. -...|.-++......+...+|...++.+...+- .+...++.+...+
T Consensus 497 t~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 497 TLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLH 574 (1018)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHH
Confidence 23445666777778888888888888876422 122233333222234567788888888776543 3666777777788
Q ss_pred HhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 622 VEKRQMEKAIEILDEMTLA-GISPNEHTYTTIMHGYAS------------LGDTGKAFEYFTKLRNEGLELDVFTYEALL 688 (798)
Q Consensus 622 ~~~~~~~~A~~~~~~m~~~-~~~p~~~t~~~li~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 688 (798)
.+...+..|.+-|...... ...+|..+.-.|.+.|.. .+..++|+++|.+++..... |...-|.+.
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIg 653 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIG 653 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchh
Confidence 8888888888876665543 223566666666665542 34578899999999988765 788889999
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCc
Q 003749 689 KACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE-GVQPDVHTYTSFINACSKAGDM 767 (798)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~~~~~l~~~~~~~g~~ 767 (798)
-+++..|++.+|..+|.+..+.. ..+..+|-.+..+|...|++..|+++|+..... +-.-+..+...|..++...|.+
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 99999999999999999998754 235668889999999999999999999986654 4444678889999999999998
Q ss_pred cccccc
Q 003749 768 QVRFSI 773 (798)
Q Consensus 768 ~~a~~~ 773 (798)
.+|.+.
T Consensus 733 ~eak~~ 738 (1018)
T KOG2002|consen 733 QEAKEA 738 (1018)
T ss_pred HHHHHH
Confidence 877665
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=2.7e-20 Score=199.14 Aligned_cols=301 Identities=15% Similarity=0.152 Sum_probs=162.6
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcC
Q 003749 339 HAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLN---AIIYGNIIYAQCQTR 415 (798)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 415 (798)
..+...|++++|+..|+++.+.+ +.+..++..++..|.+.|++++|+.+++.+.......+ ..++..++..|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34445566666666666666643 22445566666666666666666666666654321111 123344444444444
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003749 416 NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSK 495 (798)
Q Consensus 416 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 495 (798)
++++|+.+|+++.+.. +. +..+++.++.++.+.|++++|++.++
T Consensus 122 ~~~~A~~~~~~~l~~~-~~-----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~ 165 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DF-----------------------------------AEGALQQLLEIYQQEKDWQKAIDVAE 165 (389)
T ss_pred CHHHHHHHHHHHHcCC-cc-----------------------------------hHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 4444444444444331 12 33444445555555555555555555
Q ss_pred HHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 003749 496 VMKSSGIKHN----MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER 571 (798)
Q Consensus 496 ~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 571 (798)
.+.+.+..+. ...+..+...+.+.|++++|..+|+++.+.... +...+..++..+.+.|++++|.++|+++...+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 166 RLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 5444321111 112333444555556666666666655554322 33445555566666666666666666665543
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003749 572 HRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTT 651 (798)
Q Consensus 572 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ 651 (798)
......++..++.+|.+.|++++|...++++.+.. |+...+..++..+.+.|++++|..+|+++.+. .|+..++..
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~ 320 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHR 320 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHH
Confidence 22223345556666667777777777777666543 34444566666677777777777777766654 466666666
Q ss_pred HHHHHHh---cCChHHHHHHHHHHHHcCCCCCH
Q 003749 652 IMHGYAS---LGDTGKAFEYFTKLRNEGLELDV 681 (798)
Q Consensus 652 li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 681 (798)
++..+.. .|+.++++.+++++.+.++.++.
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 6665553 34667777777777665544443
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=1.5e-17 Score=190.09 Aligned_cols=493 Identities=10% Similarity=0.015 Sum_probs=341.7
Q ss_pred hhhhHHHHHHHHHHhcCCccHHHH-----H----------------HHH-HhhcCC--CHhhHHHH-HHHHHHcCChHHH
Q 003749 261 KEREWHRREFRKAVETQPENWQAV-----V----------------SAF-ERIKKP--SRREFGLM-VNYYARRGDMHRA 315 (798)
Q Consensus 261 ~~~~~a~~~f~~~~~~~~~~~~~~-----~----------------~~~-~~~~~~--~~~~~~~l-i~~~~~~g~~~~A 315 (798)
+..+.|...|++++..+|.+-... . .+. .+...+ .......+ .+.|.+.|+|++|
T Consensus 122 ~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 334788999999998888652211 1 011 112223 34444444 7888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003749 316 RQTFENMRARGIEPTLHVYTNLIHAYAV-GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKE 394 (798)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (798)
++++.++.+.+ ..+......|..+|.. .++ +++..+++.. +.-+...+..++..|.+.|+.++|.++++++..
T Consensus 202 i~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 202 DTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 99999999886 3455556777778877 366 7777776542 234788888999999999999999998888654
Q ss_pred cCCC-CChhhH------------------------------HHHHHHHHhcCChHHHHHHH-------------------
Q 003749 395 RHAT-LNAIIY------------------------------GNIIYAQCQTRNMERAEALV------------------- 424 (798)
Q Consensus 395 ~~~~-~~~~~~------------------------------~~l~~~~~~~g~~~~A~~~~------------------- 424 (798)
.... +...+| ..++..+.+.++++-++++.
T Consensus 276 ~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 355 (987)
T PRK09782 276 LFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVAT 355 (987)
T ss_pred cccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhcccc
Confidence 3211 111111 11133444555555444332
Q ss_pred ----------HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCcCHHHHHHHHHHHHHcCC---HHH
Q 003749 425 ----------RDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC-G-FSPSIISYGCLINLYTKIGK---VSK 489 (798)
Q Consensus 425 ----------~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~---~~~ 489 (798)
+.|.+.. +-+......+.....+.|+.++|..+|...... + -..+......|+..|.+.+. ..+
T Consensus 356 ~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 356 RNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred CchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 1111110 123333444445566788889999998888762 1 22344555677888877766 223
Q ss_pred HHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003749 490 ALEV----------------------SKVMKSS-GI-KH--NMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVL 543 (798)
Q Consensus 490 A~~~----------------------~~~m~~~-~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 543 (798)
+..+ +...... +. .. +...|..+..++.. ++.++|+..|.+..... |+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHH
Confidence 3222 1111111 11 23 56677777777776 78888999888877653 45444
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 544 YNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVE 623 (798)
Q Consensus 544 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 623 (798)
...+..++...|++++|...|+++... .++...+..+..++.+.|++++|..++++.++.... +...+..+...+..
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~ 588 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHh
Confidence 444555667899999999999998665 234455667778889999999999999999886532 33344444445556
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003749 624 KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAV 703 (798)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 703 (798)
.|++++|+..+++.++. .|+...|..+..++.+.|+.++|+..|+++++.... +...++.+..++...|++++|+.+
T Consensus 589 ~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 69999999999999876 467889999999999999999999999999998754 778899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCcccccc
Q 003749 704 TKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDV-HTYTSFINACSKAGDMQVRFS 772 (798)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~l~~~~~~~g~~~~a~~ 772 (798)
+++..+.. +.+...+..+..++...|++++|+..+++..+. .|+. .+.........+..+++.+.+
T Consensus 666 l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 666 LERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 99999876 678889999999999999999999999999874 5653 444455555555555555554
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=4.4e-18 Score=190.56 Aligned_cols=369 Identities=10% Similarity=0.045 Sum_probs=290.2
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
......++..+.+.|++++|+.+++...... .-+...+..++.++...|++++|+..|+++.+.. +.+...+..+...
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~ 119 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASV 119 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3445667788899999999999999999874 3355566777778888999999999999999874 3367889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (798)
+...|++++|+..|+++..... .+...+..++.++...|++++|...++.+..... .+...+..+ ..+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHH
Confidence 9999999999999999998743 3677888999999999999999999998887642 334444444 347889999999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHH
Q 003749 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWAN----VFAVFED 531 (798)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~ 531 (798)
...++++.+.....+...+..+...+.+.|++++|+..++++.+.. ..+...+..+...|...|++++ |...|++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 9999998876433345555666788999999999999999999875 4467788889999999999986 8999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003749 532 VMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTV 611 (798)
Q Consensus 532 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 611 (798)
..+..+. +...+..+..++.+.|++++|+..+++....... +...+..+..++.+.|++++|+..|+.+.+.... +.
T Consensus 276 Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~ 352 (656)
T PRK15174 276 ALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TS 352 (656)
T ss_pred HHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-ch
Confidence 9987654 6788999999999999999999999999987644 5566777889999999999999999999876433 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCChHHHHHHHHHHH
Q 003749 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYT----TIMHGYASLGDTGKAFEYFTKLR 673 (798)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~----~li~~~~~~g~~~~A~~~~~~~~ 673 (798)
..+..+..++...|+.++|+..|++..+....-....|. .+-.++...+..++....+.++.
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 344445678899999999999999988763221222333 33333444444444434444443
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=5.2e-18 Score=189.91 Aligned_cols=362 Identities=7% Similarity=-0.004 Sum_probs=289.9
Q ss_pred HHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003749 307 ARRGDMHRARQTFENMRAR--GIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEA 384 (798)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 384 (798)
.+..+|+.-.-+|....+. .-.-+..-.-.++..+.+.|++++|+.+++..+... +-+...+..++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 4455565555555444332 001122334456778889999999999999999874 3356677777788888999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 385 ADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKE 464 (798)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (798)
|+..|+++....+. +...+..+..++.+.|++++|.+.++++.+.. +.+...+..++..+...|++++|...+.++..
T Consensus 95 A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 99999999987543 67788999999999999999999999999874 45677889999999999999999999999877
Q ss_pred CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003749 465 CGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLY 544 (798)
Q Consensus 465 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 544 (798)
.... +...+..+ ..+...|++++|..+++.+.+.....+...+..+...+...|++++|+..|+++.+.... +...+
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~ 249 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALR 249 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHH
Confidence 5433 33344333 358889999999999999887643344555566678889999999999999999987654 67888
Q ss_pred HHHHHHHHcCCChHH----HHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 545 NNIIRAFCGMGNMDR----AIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILG 620 (798)
Q Consensus 545 ~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 620 (798)
..+..+|...|++++ |+..|+++...... +...+..+...+.+.|++++|+..++++.+.... +...+..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 899999999999986 89999999987644 6678889999999999999999999999987544 56778888899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003749 621 LVEKRQMEKAIEILDEMTLAGISPNE-HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLE 678 (798)
Q Consensus 621 ~~~~~~~~~A~~~~~~m~~~~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 678 (798)
|.+.|++++|+..|+++.+.+ |+. ..+..+..++...|+.++|...|+++.+....
T Consensus 328 l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 999999999999999998763 444 33444677889999999999999999887544
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=1.5e-17 Score=190.57 Aligned_cols=421 Identities=10% Similarity=-0.003 Sum_probs=235.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (798)
..-.+......|+.++|+++++.+.... ..+...+..+..++.+.|++++|+.+|++.++.. +.+...+..++.++.+
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344444555566666666666655421 2334445555566666666666666666655542 2234455555555666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 003749 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIV 458 (798)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (798)
.|++++|+..++++...... +.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..++|+..
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 66666666666665554222 333 5555555556666666666666655543 22344444455555555555555555
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCCH---HHHHHHHH
Q 003749 459 FERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGF-----LKLKDW---ANVFAVFE 530 (798)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~-----~~~~~~---~~a~~~~~ 530 (798)
++++.. .|+... -+ .......++..+ ...+++ ++|+..++
T Consensus 173 l~~~~~---~p~~~~---~l--------------------------~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 173 IDDANL---TPAEKR---DL--------------------------EADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HHhCCC---CHHHHH---HH--------------------------HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 544432 111000 00 000001111111 111223 55666666
Q ss_pred HHHHc-CCCCCHH-H----HHHHHHHHHcCCChHHHHHHHHHHHHCCCC-CCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 531 DVMRD-GLKPDVV-L----YNNIIRAFCGMGNMDRAIHIVKEMQKERHR-PTSRTFMPIIHGFARAGEMKRALEIFDMMR 603 (798)
Q Consensus 531 ~~~~~-g~~~~~~-~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 603 (798)
.+.+. ...|+.. . ....+.++...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+.+|+++.
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 66543 1111111 1 111123344556777777777776665421 111 12224556677777777777777766
Q ss_pred HcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCChHHHH
Q 003749 604 RSGCIP---TVHTFNALILGLVEKRQMEKAIEILDEMTLAGI-----------SPN---EHTYTTIMHGYASLGDTGKAF 666 (798)
Q Consensus 604 ~~~~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-----------~p~---~~t~~~li~~~~~~g~~~~A~ 666 (798)
+..... .......|..++.+.|++++|..+++.+.+... .|+ ...+..+...+...|+.++|+
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 543211 123444555566777777777777777665421 122 224456667778888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003749 667 EYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEG 746 (798)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 746 (798)
++++++...... +...+..+...+...|+.++|+..++++.... +.+...+..++..+.+.|++++|+.+++++++.
T Consensus 380 ~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~- 456 (765)
T PRK10049 380 MRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR- 456 (765)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Confidence 888888876544 57788888888888888888888888888765 555677777777888888888888888888874
Q ss_pred CCCCHHHHHHHHHHH
Q 003749 747 VQPDVHTYTSFINAC 761 (798)
Q Consensus 747 ~~pd~~~~~~l~~~~ 761 (798)
.||......|-..+
T Consensus 457 -~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 457 -EPQDPGVQRLARAR 470 (765)
T ss_pred -CCCCHHHHHHHHHH
Confidence 56655444444444
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=4.4e-17 Score=186.66 Aligned_cols=390 Identities=11% Similarity=0.069 Sum_probs=250.7
Q ss_pred HHHHHHHHhhc---CCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 003749 282 QAVVSAFERIK---KPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMK 358 (798)
Q Consensus 282 ~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 358 (798)
..++..+.+.. ..+...+..+...+...|++++|+++|+++++.. +.+...+..++.++...|++++|+..+++++
T Consensus 32 ~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l 110 (765)
T PRK10049 32 AEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLV 110 (765)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555433 2455568999999999999999999999999873 4456778888899999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--
Q 003749 359 EEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPI-- 436 (798)
Q Consensus 359 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~-- 436 (798)
+.. +.+.. +..+..++...|+.++|+..|+++.+.... +...+..++.++...+..++|++.++.+.. .|+.
T Consensus 111 ~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~ 184 (765)
T PRK10049 111 SGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKR 184 (765)
T ss_pred HhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHH
Confidence 873 34666 999999999999999999999999998544 677777788889999999999999877654 1220
Q ss_pred ----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHC-CCCCCHH-
Q 003749 437 ----DIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKV---SKALEVSKVMKSS-GIKHNMK- 507 (798)
Q Consensus 437 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~-~~~~~~~- 507 (798)
.....++..+.. ......+++ ++|+..++.+.+. ...|+..
T Consensus 185 ~l~~~~~~~~~r~~~~------------------------------~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 185 DLEADAAAELVRLSFM------------------------------PTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred HHHHHHHHHHHHhhcc------------------------------cccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 011111111110 001111222 4555555555532 1111111
Q ss_pred HH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC---CcccH
Q 003749 508 TY----SMLINGFLKLKDWANVFAVFEDVMRDGLK-PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP---TSRTF 579 (798)
Q Consensus 508 ~~----~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~ 579 (798)
.+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+.+|+++....... .....
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~ 313 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEEL 313 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHH
Confidence 00 01122334456666666666666655422 221 11223556666666666666666655432111 01223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003749 580 MPIIHGFARAGEMKRALEIFDMMRRSGC-----------IPT---VHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN 645 (798)
Q Consensus 580 ~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 645 (798)
..+..++.+.|++++|..+++.+.+... .|+ ...+..+...+...|++++|+++++++.... +.+
T Consensus 314 ~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n 392 (765)
T PRK10049 314 ADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGN 392 (765)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 3444455666666666666666654321 122 2244556667777888888888888877653 445
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003749 646 EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (798)
Q Consensus 646 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (798)
...+..++..+...|+.++|++.++++++.... +...+..++..+...|++++|+.+++++++..
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 667777778888888888888888888776533 45566666777788888888888888887754
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=2.2e-16 Score=176.83 Aligned_cols=443 Identities=11% Similarity=0.052 Sum_probs=332.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTL--HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
+....+...++.|+++.|+..|+++.+. .|+. .++ .++..+...|+.++|+..+++..... .........++..
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~l 111 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARA 111 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHH
Confidence 3444555677999999999999999987 4443 244 88889999999999999999998321 2233344444678
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (798)
|...|++++|+++|+++.+.... +...+..++..|.+.++.++|++.++++.... ++...+..++..+...++..+|
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHH
Confidence 99999999999999999998655 57777788899999999999999999998873 4555555565666667777779
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH------HHHHHHH-----HhcCC---
Q 003749 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTY------SMLINGF-----LKLKD--- 521 (798)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~------~~ll~~~-----~~~~~--- 521 (798)
++.++++.+.... +...+..+..++.+.|-...|+++.++-... +.+...-+ ..++..- ....+
T Consensus 189 L~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 189 LQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 9999999997532 6777888899999999999999877654321 11111111 1111100 01122
Q ss_pred HHHHHHHHHHHHHc-CCCCCH-H----HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHH
Q 003749 522 WANVFAVFEDVMRD-GLKPDV-V----LYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRA 595 (798)
Q Consensus 522 ~~~a~~~~~~~~~~-g~~~~~-~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 595 (798)
.+.|+.-++.+... +..|.. . ...-.+-++...|++.++++.|+.+...+......+...+.++|...++.++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 34455555555542 111221 1 22234567889999999999999999888665666888899999999999999
Q ss_pred HHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHH
Q 003749 596 LEIFDMMRRSGC-----IPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGI-------------SPNEH-TYTTIMHGY 656 (798)
Q Consensus 596 ~~~~~~~~~~~~-----~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-------------~p~~~-t~~~li~~~ 656 (798)
+.+|..+..... .++......|..+|...+++++|..+++++.+... .||-. .+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 999999876431 22444467888999999999999999999987311 12222 345567788
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003749 657 ASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAA 736 (798)
Q Consensus 657 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 736 (798)
...|++.+|.+.++++....+. |......+.+.+...|+..+|+..++.+.... +.+..+...++.++...|++++|.
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999999988754 89999999999999999999999998777664 677788889999999999999999
Q ss_pred HHHHHHHHcCCCCCHHH
Q 003749 737 DLMQQMKQEGVQPDVHT 753 (798)
Q Consensus 737 ~~~~~m~~~g~~pd~~~ 753 (798)
.+++.+.+. .|+...
T Consensus 505 ~~~~~l~~~--~Pe~~~ 519 (822)
T PRK14574 505 LLTDDVISR--SPEDIP 519 (822)
T ss_pred HHHHHHHhh--CCCchh
Confidence 999998874 455443
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=6.3e-16 Score=173.14 Aligned_cols=437 Identities=11% Similarity=0.051 Sum_probs=326.7
Q ss_pred hhhhccCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHH
Q 003749 243 RARWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENM 322 (798)
Q Consensus 243 ~~~~~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 322 (798)
....+..+.|+. +.|+..|++++..+|. +......++..+...|+.++|+..+++.
T Consensus 39 ~~aii~~r~Gd~---------~~Al~~L~qaL~~~P~---------------~~~av~dll~l~~~~G~~~~A~~~~eka 94 (822)
T PRK14574 39 DSLIIRARAGDT---------APVLDYLQEESKAGPL---------------QSGQVDDWLQIAGWAGRDQEVIDVYERY 94 (822)
T ss_pred HHHHHHHhCCCH---------HHHHHHHHHHHhhCcc---------------chhhHHHHHHHHHHcCCcHHHHHHHHHh
Confidence 334447788888 8999999999999986 3212227788888999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh
Q 003749 323 RARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAI 402 (798)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 402 (798)
.... .........+...|...|++++|+++|+++++.... +...+..++..|.+.++.++|++.++++..... +..
T Consensus 95 ~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp--~~~ 170 (822)
T PRK14574 95 QSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDP--TVQ 170 (822)
T ss_pred ccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc--chH
Confidence 8321 223333344467888999999999999999998533 677888889999999999999999999988743 444
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH------HH
Q 003749 403 IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISY------GC 476 (798)
Q Consensus 403 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~ 476 (798)
.+..++..+...++..+|++.++++.+.+ +.+...+..++.+..+.|-...|+++..+-.+. +.+...-+ ..
T Consensus 171 ~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~ 248 (822)
T PRK14574 171 NYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAE 248 (822)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHH
Confidence 44555555656777777999999999985 557788899999999999999999877654322 11111111 11
Q ss_pred HHHHH---H--HcCC---HHHHHHHHHHHHHC-CCCCCH-HH-HH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003749 477 LINLY---T--KIGK---VSKALEVSKVMKSS-GIKHNM-KT-YS---MLINGFLKLKDWANVFAVFEDVMRDGLKPDVV 542 (798)
Q Consensus 477 li~~~---~--~~g~---~~~A~~~~~~m~~~-~~~~~~-~~-~~---~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 542 (798)
+++.- . ...+ .+.|+.-++.+... +..|.. .. .. -.+-++...+++.++++.|+.+...+...-..
T Consensus 249 ~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y 328 (822)
T PRK14574 249 QVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY 328 (822)
T ss_pred HHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH
Confidence 11110 0 1122 34455555555542 111321 22 22 23456778899999999999999988766677
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCC-----CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------
Q 003749 543 LYNNIIRAFCGMGNMDRAIHIVKEMQKERH-----RPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGC---------- 607 (798)
Q Consensus 543 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------- 607 (798)
+-..+..+|...++.++|+.+|+.+..... .++......|.-+|...+++++|..+++.+.+.-.
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~ 408 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG 408 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC
Confidence 888999999999999999999999976532 12233346788999999999999999999987321
Q ss_pred ---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003749 608 ---IPT-VHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFT 683 (798)
Q Consensus 608 ---~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 683 (798)
.|| ...+..++..+...|++.+|++.++++.... +-|......+.+.+...|...+|++.++.+...... +..+
T Consensus 409 ~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~ 486 (822)
T PRK14574 409 KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLIL 486 (822)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHH
Confidence 122 2334556677889999999999999998764 678889999999999999999999999888776543 6778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003749 684 YEALLKACCKSGRMQSALAVTKEMSAQK 711 (798)
Q Consensus 684 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (798)
...++.++...|++++|..+.+.+.+..
T Consensus 487 ~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 487 ERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 8889999999999999999999998764
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=9.1e-15 Score=148.82 Aligned_cols=471 Identities=11% Similarity=0.021 Sum_probs=364.9
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003749 305 YYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEA 384 (798)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 384 (798)
+.....+.+.|+-++.++.+. +..+.. |..+|++...|+.|.+++++..+. ++-+...|.+....--..|+.+.
T Consensus 385 aAVelE~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHHhccChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHH
Confidence 344455667799999999887 333444 445666777899999999999886 67788999998888888999999
Q ss_pred HHHHHHHHH----hcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHH
Q 003749 385 ADHWFEEAK----ERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAP--IDIYHMMMDGYTIIGNEEKCLIV 458 (798)
Q Consensus 385 A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 458 (798)
+.+++++.+ ..|+..+..-|..=...|-..|..--+..+....+..|++.. ..+|+.-.+.|.+.+.++-|+.+
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 988887654 467788888888888888889999999999999988876533 56888889999999999999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003749 459 FERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK 538 (798)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 538 (798)
|...++.. .-+...|......--..|..++...+|+++... .+-....|......+-..|++..|..++....+....
T Consensus 539 ya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 539 YAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 99988863 336778888888888889999999999999886 3445566766777777889999999999999887665
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 539 PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALI 618 (798)
Q Consensus 539 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li 618 (798)
+...|-.-+.....+.++++|..+|.+.... .++...|.--+....-.+..++|++++++.++.- .--...|..+.
T Consensus 617 -seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlG 692 (913)
T KOG0495|consen 617 -SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLG 692 (913)
T ss_pred -cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHh
Confidence 7788888889999999999999999988775 4577888877777777889999999999888752 22356777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH
Q 003749 619 LGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQ 698 (798)
Q Consensus 619 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 698 (798)
..+-+.++++.|.+.|..-.+. .+-..-.|-.|...-.+.|.+-+|..+|++.+-.+.+ +...|...|.+-.+.|+.+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHH
Confidence 7888888888888888776554 2334456777777777888999999999999887766 8889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCcccccccccc--
Q 003749 699 SALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSIPML-- 776 (798)
Q Consensus 699 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~~~~-- 776 (798)
.|..++.++++. ++.+...|.--|+...+.++-......+++ ..-|..+...+...+....++++|++....
T Consensus 771 ~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 771 QAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAV 844 (913)
T ss_pred HHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888764 356666777777777776665444444443 244666666677777777777777776332
Q ss_pred c--hhhhhhhhhhheeecCCC
Q 003749 777 T--KFYLFSFIWFLITMNSHK 795 (798)
Q Consensus 777 ~--~~~~~~~~w~~~~~~~~~ 795 (798)
+ +.++|..+||..-...||
T Consensus 845 k~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 845 KKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred ccCCccchHHHHHHHHHHHhC
Confidence 2 256777788755555555
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=2.1e-16 Score=153.51 Aligned_cols=458 Identities=16% Similarity=0.148 Sum_probs=320.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCChHHHHHHHHHHHHcCCC----CCHHHHHHHH
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVY-TNLIHAYAVGRDMEEALSCVRKMKEEGIE----MSLVTYSIIV 373 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~l~ 373 (798)
...|.+-|..+..+.+|+..|+-+++...-|+.-.. -.+.+.+.+.+.+.+|++.|+..++.=.. ......+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 344556677778899999999999987655555433 34557788999999999999887765211 1234566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------------CChhhHHH
Q 003749 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID------------APIDIYHM 441 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~------------~~~~~~~~ 441 (798)
..+.+.|++++|+..|+...+. .||..+-..|+.++.--|+-++..+.|.+|+..-.. |+....+.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 7788999999999999998875 568888888888888999999999999999864322 22222322
Q ss_pred HH-----HHHHhcC--CHHHHHHHHHHHHHCCCCcCHH-------------HHH--------HHHHHHHHcCCHHHHHHH
Q 003749 442 MM-----DGYTIIG--NEEKCLIVFERLKECGFSPSII-------------SYG--------CLINLYTKIGKVSKALEV 493 (798)
Q Consensus 442 l~-----~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~-------------~~~--------~li~~~~~~g~~~~A~~~ 493 (798)
.+ .-..+.+ +.++++-.--++..--+.||.. .+. .-..-|.+.|+++.|+++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 22 1111111 1222222222222111122210 010 112357889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 003749 494 SKVMKSSGIKHNMKTYSMLING--FLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER 571 (798)
Q Consensus 494 ~~~m~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 571 (798)
++-+.+.+-+.-...-+.|-.. +.-.+++.+|.++-+..+...-. +......-......+|++++|.+.|++.+...
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 9988876433333333333322 22346788888877776654221 33333333444556899999999999998763
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003749 572 HRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTT 651 (798)
Q Consensus 572 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ 651 (798)
-.-. ..+-.+.-.+...|++++|++.|-++...- ..+..+..-+...|....+...|++++.+.... ++.|...++-
T Consensus 521 asc~-ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilsk 597 (840)
T KOG2003|consen 521 ASCT-EALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSK 597 (840)
T ss_pred hHHH-HHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHH
Confidence 2211 122223335678899999999998765431 236677777888888899999999999876654 5667889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcC
Q 003749 652 IMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWA-RRG 730 (798)
Q Consensus 652 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g 730 (798)
|...|-+.|+-.+|++++-+--.. +..+..+...|..-|....-+++|+.+|++..- +.|+..-|..|+..|. +.|
T Consensus 598 l~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcc
Confidence 999999999999999887655443 345778888888889999899999999999876 4699999998886655 689
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003749 731 DVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGD 766 (798)
Q Consensus 731 ~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~ 766 (798)
++++|.++++...++ +.-|......|+..|...|.
T Consensus 675 nyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 999999999998875 77788999999999988884
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.9e-14 Score=139.34 Aligned_cols=322 Identities=16% Similarity=0.258 Sum_probs=236.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHccCChHHH-HHHHHHHHHcC------------
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHA--YAVGRDMEEA-LSCVRKMKEEG------------ 361 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~A-~~~~~~m~~~g------------ 361 (798)
.+=+.|++. ...|.+.++.-+|++|...|+..+...-..|+.. |.+..+..-| ++.|-.|.+.|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 344555554 4578889999999999999887777776666644 3233222211 12222232221
Q ss_pred -------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003749 362 -------IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA 434 (798)
Q Consensus 362 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 434 (798)
.+-...|+.+||.++|+.-..+.|.++|.+......+.+..+|+.+|.+-.- ....+++.+|+...+.|
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTP 271 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCC
Confidence 2335679999999999999999999999999988888899999998877542 23378999999999999
Q ss_pred ChhhHHHHHHHHHhcCCHHHH----HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH----CCCC--
Q 003749 435 PIDIYHMMMDGYTIIGNEEKC----LIVFERLKECGFSPSIISYGCLINLYTKIGKVSK-ALEVSKVMKS----SGIK-- 503 (798)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~~~~-- 503 (798)
|..|+|+++.+..+.|+++.| ++++.+|++.|+.|...+|..+|..+.+.++..+ +..++..+.. ..++
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 999999999999999988754 5677888999999999999999999988887644 4444444433 2222
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC---CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 003749 504 --HNMKTYSMLINGFLKLKDWANVFAVFEDVMRDG----LKP---DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP 574 (798)
Q Consensus 504 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 574 (798)
.+...|...+..|.+..+.+-|.++...+.... +.+ ...-|..+..+.|+....+.-..+|+.|.-.-.-|
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p 431 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP 431 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC
Confidence 245567778888889999998988876654321 111 12345667788889999999999999998887778
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 575 TSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVE 623 (798)
Q Consensus 575 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 623 (798)
+..+...++.+..-.++++-.-+++.+++..|...+...-..++..+++
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 8888899999999999999999999999887655444444444434443
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=5.8e-14 Score=149.08 Aligned_cols=483 Identities=11% Similarity=0.118 Sum_probs=340.8
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
++|.+++.+++..+|. +...|..|..+|-+.|+.++++..+-.+-..+ +.|...|..+.....+
T Consensus 156 eeA~~i~~EvIkqdp~---------------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 156 EEAEEILMEVIKQDPR---------------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCcc---------------chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHh
Confidence 9999999999999986 77889999999999999999999888887775 5577899999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH----HHHHHHHhcCChHH
Q 003749 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYG----NIIYAQCQTRNMER 419 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~ 419 (798)
.|+++.|.-+|.+.++.. +.+...+---+..|-+.|+...|.+.|.++.....+.|..-+. .++..+...++-+.
T Consensus 220 ~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred cccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999975 4466666777889999999999999999999876543433333 34556777788899
Q ss_pred HHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------------------------CCcCH
Q 003749 420 AEALVRDMEEEG-IDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG---------------------------FSPSI 471 (798)
Q Consensus 420 A~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------------------~~~~~ 471 (798)
|.+.++.....+ -..+...++.++..|.+...++.+......+.... ...+.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 999998877732 23456678899999999999999999888887621 12222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 472 ISYGCLINLYTKIGKVSKALEVSKVMKSSG--IKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549 (798)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 549 (798)
.++ .+.-++......+....+.....+.+ ...+...|.-+.++|...|++.+|+.+|..+......-+...|-.+..
T Consensus 379 ~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 379 RVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 221 12233344444444444455555554 334556788888999999999999999999998766667889999999
Q ss_pred HHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHH
Q 003749 550 AFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRS--------GCIPTVHTFNALILGL 621 (798)
Q Consensus 550 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~p~~~~~~~li~~~ 621 (798)
+|...|.+++|.+.|+.++..... +......|...+.+.|+.++|.+.+..+..- +..++..........+
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 999999999999999999887543 5566667788899999999999999886522 2334444445556677
Q ss_pred HhcCCHHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHH------HH
Q 003749 622 VEKRQMEKAIEILDEMTLAG----------------------ISPNEHTYTTIMHGYASLGDTGKAFEYFTK------LR 673 (798)
Q Consensus 622 ~~~~~~~~A~~~~~~m~~~~----------------------~~p~~~t~~~li~~~~~~g~~~~A~~~~~~------~~ 673 (798)
.+.|+.++=+.+...|+... ..-...+...++.+-.+.++.....+-+.. ..
T Consensus 537 ~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e 616 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVE 616 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhh
Confidence 78888777555444433210 111222333444444444442222221111 11
Q ss_pred HcCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Q 003749 674 NEGLELD--VFTYEALLKACCKSGRMQSALAVTKEMSAQKI-PRNTF----VYNILIDGWARRGDVWEAADLMQQMKQE- 745 (798)
Q Consensus 674 ~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~- 745 (798)
..++..+ ...+..++.++++.+++++|+.+...+.+..+ ..+.. .-..++.+....+++..|...++.|...
T Consensus 617 ~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~ 696 (895)
T KOG2076|consen 617 LRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQF 696 (895)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 1222222 24567788899999999999999998876532 11222 2355667777899999999999999864
Q ss_pred CC--CCCH-HHHHHHHHHHHHcC
Q 003749 746 GV--QPDV-HTYTSFINACSKAG 765 (798)
Q Consensus 746 g~--~pd~-~~~~~l~~~~~~~g 765 (798)
++ .+.. ..|+...+...+.|
T Consensus 697 ~~~~~~~q~~l~n~~~s~~~~~~ 719 (895)
T KOG2076|consen 697 QFYLDVYQLNLWNLDFSYFSKYG 719 (895)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Confidence 22 2222 24554555555554
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.77 E-value=6.8e-14 Score=148.53 Aligned_cols=466 Identities=15% Similarity=0.132 Sum_probs=334.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (798)
.+.....|++++|.+++.+.++.. +.+...|.+|...|-..|+.++++..+-..-..+ +-|...|..+.....+.|.+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 344555699999999999999985 5577899999999999999999999886555543 44778999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHH
Q 003749 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPI----DIYHMMMDGYTIIGNEEKCLIV 458 (798)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~ 458 (798)
+.|.-+|.++++.+.. +...+..-+..|-+.|+..+|.+.|.++.......+. .....+++.|...++.+.|++.
T Consensus 224 ~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999998544 6666666778899999999999999999997532232 2334456777888888999999
Q ss_pred HHHHHHCC-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---------------------------CCCHHHHH
Q 003749 459 FERLKECG-FSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGI---------------------------KHNMKTYS 510 (798)
Q Consensus 459 ~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------------------------~~~~~~~~ 510 (798)
++.....+ -.-+...++.++..|.+...++.|......+..... ..+..++
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~- 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI- 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-
Confidence 98887632 233556788999999999999999998888776211 1222221
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 003749 511 MLINGFLKLKDWANVFAVFEDVMRDG--LKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFAR 588 (798)
Q Consensus 511 ~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 588 (798)
-++-++.+.+..+....+...+.+.. +.-+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 12334445555555555555555555 4445678889999999999999999999999988766678899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcC
Q 003749 589 AGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLA--------GISPNEHTYTTIMHGYASLG 660 (798)
Q Consensus 589 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--------~~~p~~~t~~~li~~~~~~g 660 (798)
.|.++.|.+.|..++..... +...--.|...+.+.|+.++|.+.+..+..- ...++........+.+.+.|
T Consensus 462 l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 99999999999999986543 5666677778899999999999999986522 23455556666777888899
Q ss_pred ChHHHHHHHHHHHHcCC----------------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHH------HhCCC
Q 003749 661 DTGKAFEYFTKLRNEGL----------------------ELDVFTYEALLKACCKSGRMQSALAVTKEM------SAQKI 712 (798)
Q Consensus 661 ~~~~A~~~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~ 712 (798)
+.++-+.+-..|+.... .-...+...++.+-.+.++......-...- ...++
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 98886666665554211 111122222333333333322211111110 11122
Q ss_pred CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHH----HHHHHHHHHHHcCCccccccc
Q 003749 713 PRNT--FVYNILIDGWARRGDVWEAADLMQQMKQEGVQ-PDVH----TYTSFINACSKAGDMQVRFSI 773 (798)
Q Consensus 713 ~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~----~~~~l~~~~~~~g~~~~a~~~ 773 (798)
..+. ..+.-++..+++.|++++|+.+...+.+.... -|.. .-...+.++...++...|++.
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~ 688 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSY 688 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 2222 24566788899999999999999998875322 2333 223456777888999988876
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=4.2e-13 Score=131.83 Aligned_cols=475 Identities=12% Similarity=0.082 Sum_probs=342.8
Q ss_pred hhHHHHhhhhc-cCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHH
Q 003749 237 KNKAEVRARWV-AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRA 315 (798)
Q Consensus 237 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 315 (798)
.+++..-..|| |++-... +++...|+.+|.++++.+-. +...|-..+.+=.++.+...|
T Consensus 67 rrnR~~~~~WikYaqwEes-----q~e~~RARSv~ERALdvd~r---------------~itLWlkYae~Emknk~vNhA 126 (677)
T KOG1915|consen 67 RRNRLNMQVWIKYAQWEES-----QKEIQRARSVFERALDVDYR---------------NITLWLKYAEFEMKNKQVNHA 126 (677)
T ss_pred HHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHhcccc---------------cchHHHHHHHHHHhhhhHhHH
Confidence 35566777888 7665433 45568899999999988754 444555566666678888999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003749 316 RQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
+.++++++..- +--...|...+.+=-..|++..|.++|++-.+ ..|+.-.|++.|..-.+...++.|..+|++....
T Consensus 127 RNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~ 203 (677)
T KOG1915|consen 127 RNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV 203 (677)
T ss_pred HHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee
Confidence 99999998862 22223556666666677999999999998877 5789999999999999999999999999998765
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--H
Q 003749 396 HATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE-GI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS--I 471 (798)
Q Consensus 396 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~ 471 (798)
.|++..|......-.++|++.-+..+|...++. |- ..+...+.+.+..-..+..++.|.-+|.-.++. +..+ .
T Consensus 204 --HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~rae 280 (677)
T KOG1915|consen 204 --HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAE 280 (677)
T ss_pred --cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHH
Confidence 478888988888888999999999999887763 11 112334555555556778888888888887765 2222 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HH
Q 003749 472 ISYGCLINLYTKIGKVSKALEV--------SKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPD-VV 542 (798)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~ 542 (798)
..|..+...=-+.|+.....++ ++.+.+.+ ..|-.+|-..++.-...|+.+...++|+..+..-+... -.
T Consensus 281 eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr 359 (677)
T KOG1915|consen 281 ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKR 359 (677)
T ss_pred HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHH
Confidence 4555555555555664433332 34444443 45778888888888888999999999999887533221 12
Q ss_pred HHHHHHHH--------HHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHH----HHhcCCHHHHHHHHHHHHHcCCCCC
Q 003749 543 LYNNIIRA--------FCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHG----FARAGEMKRALEIFDMMRRSGCIPT 610 (798)
Q Consensus 543 ~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~----~~~~~~~~~a~~~~~~~~~~~~~p~ 610 (798)
.|...|.. -....+.+.+.++|+..++. ++-...|+..+--. ..+..++..|.+++..++. .-|.
T Consensus 360 ~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK 436 (677)
T KOG1915|consen 360 YWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPK 436 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCc
Confidence 23222221 13567888999999988874 22244555544433 4577899999999988765 4567
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHH
Q 003749 611 VHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG-LELDVFTYEALLK 689 (798)
Q Consensus 611 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~ 689 (798)
..+|...|..-.+.++++...+++++.++-+ +-+..+|......-..+|+.+.|..+|..+++.. ++.....|-+.|+
T Consensus 437 ~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId 515 (677)
T KOG1915|consen 437 DKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYID 515 (677)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh
Confidence 8899999999999999999999999999875 4566788888888888999999999999998763 3344566777777
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----HcC-----------CHHHHHHHHHHHHH
Q 003749 690 ACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWA-----RRG-----------DVWEAADLMQQMKQ 744 (798)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~~ 744 (798)
--...|.++.|..+++.+++.. ....+|-++..-=. ..| ....|..+|++...
T Consensus 516 FEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 516 FEIEEGEFEKARALYERLLDRT--QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 7788999999999999998753 44446655544322 233 56677788877653
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.76 E-value=5.6e-13 Score=136.01 Aligned_cols=489 Identities=11% Similarity=0.069 Sum_probs=390.9
Q ss_pred hHHHHHHHHHHhcCCcc---HHHHHHHH---------HhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 003749 264 EWHRREFRKAVETQPEN---WQAVVSAF---------ERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTL 331 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~---~~~~~~~~---------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 331 (798)
..=.++++++++..|.+ |..++..= .+-.. -..+-..|.-+|++..-|+.|..+++.+.+. ++.+.
T Consensus 363 ~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAve-ccp~s~dLwlAlarLetYenAkkvLNkaRe~-iptd~ 440 (913)
T KOG0495|consen 363 KNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVE-CCPQSMDLWLALARLETYENAKKVLNKAREI-IPTDR 440 (913)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCh
Confidence 45577899999998876 66555421 11000 0001234556778888899999999999986 67889
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--ChhhHH
Q 003749 332 HVYTNLIHAYAVGRDMEEALSCVRKM----KEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL--NAIIYG 405 (798)
Q Consensus 332 ~~~~~ll~~~~~~g~~~~A~~~~~~m----~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~ 405 (798)
.+|.+....=-.+|+.+...+++++- ...|+..+-..|..=...+-+.|..-.+..+....+..|+.- -..+|.
T Consensus 441 ~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~ 520 (913)
T KOG0495|consen 441 EIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWL 520 (913)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHh
Confidence 99999888888899999988887764 456888899999999999999999999999999988877653 245888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC
Q 003749 406 NIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIG 485 (798)
Q Consensus 406 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 485 (798)
.-...|.+.+.++-|..+|...++. .+.+..+|...+..--..|..+....+|++.... +.-....|......+...|
T Consensus 521 ~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 521 DDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAG 598 (913)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcC
Confidence 8889999999999999999999886 3567788998888888899999999999999886 3335667777788899999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 003749 486 KVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVK 565 (798)
Q Consensus 486 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 565 (798)
+.-.|..++..+.+... -+...|..-+........++.|..+|.+.... .++..+|..-+....-.++.++|+++++
T Consensus 599 dv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 599 DVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred CcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 99999999999998753 36778888899999999999999999998764 4566777776777777899999999999
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003749 566 EMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN 645 (798)
Q Consensus 566 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 645 (798)
+.++.-.. -...|..+.+.+-+.++++.|.+.|..-.+. +.-.+-.|-.|...-.+.|++-+|..+|++..-++ +.+
T Consensus 676 e~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~ 752 (913)
T KOG0495|consen 676 EALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKN 752 (913)
T ss_pred HHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCc
Confidence 98876322 3456777888899999999999988876654 33467788888877788899999999999988776 567
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003749 646 EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDG 725 (798)
Q Consensus 646 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 725 (798)
...|-..|..-.+.|+.+.|..++.++++... -+...|..-|.+..+.++-..+...+++. ..|..+.-.+...
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQecp-~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~l 826 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQECP-SSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKL 826 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHH
Confidence 88999999999999999999999999988654 37778888888888877755555555443 3677888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCccc
Q 003749 726 WARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQV 769 (798)
Q Consensus 726 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~ 769 (798)
|.....+++|.+.|++....+- .+..+|.-+..-+..+|.-+.
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHH
Confidence 9999999999999999987532 235688888888888884433
No 34
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=4.4e-15 Score=138.97 Aligned_cols=322 Identities=14% Similarity=0.185 Sum_probs=230.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcC
Q 003749 447 TIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM------KTYSMLINGFLKLK 520 (798)
Q Consensus 447 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~ll~~~~~~~ 520 (798)
.-.++.++|..+|-+|.+... .+..+.-+|.+.|.+.|..|.|+++.+.+.+. ||. .....|..-|...|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhh
Confidence 445778899999999988522 24455667888899999999999999888874 332 23344566778888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcCCHHHHH
Q 003749 521 DWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS----RTFMPIIHGFARAGEMKRAL 596 (798)
Q Consensus 521 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~ 596 (798)
-+|.|..+|..+...+.- -......|+..|-...+|++|+++-+++.+.+..... ..|..|...+.-..+++.|.
T Consensus 122 l~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 122 LLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 999999999888875432 4556778888899999999999988888876543221 22344444555567888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 597 EIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG 676 (798)
Q Consensus 597 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~ 676 (798)
.++.+..+.+.+ .+..--.+...+...|+++.|++.++...+.+..--..+...|..+|...|+.++...++..+.+..
T Consensus 201 ~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 201 ELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 888888876443 4444455666788889999999999988887655555677888889999999999999998888765
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHH
Q 003749 677 LELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWAR---RGDVWEAADLMQQMKQEGVQPDVHT 753 (798)
Q Consensus 677 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~~ 753 (798)
..++ .-..|...-....-.+.|..++.+-+..+ |+...+..|++.... .|+..+.+.+++.|...-++
T Consensus 280 ~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~--Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~----- 350 (389)
T COG2956 280 TGAD--AELMLADLIELQEGIDAAQAYLTRQLRRK--PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR----- 350 (389)
T ss_pred CCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhhC--CcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHh-----
Confidence 4433 33334443344445677777776666654 888888888887653 45677777788888754222
Q ss_pred HHHHHHHHHHcCCccccccccccchhhhhhhhhhheeecCCCCC
Q 003749 754 YTSFINACSKAGDMQVRFSIPMLTKFYLFSFIWFLITMNSHKND 797 (798)
Q Consensus 754 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~w~~~~~~~~~~~ 797 (798)
+..-.-|.+.| |...+++|.|++|+.|+-+
T Consensus 351 -~~~~YRC~~CG-------------F~a~~l~W~CPsC~~W~Ti 380 (389)
T COG2956 351 -RKPRYRCQNCG-------------FTAHTLYWHCPSCRAWETI 380 (389)
T ss_pred -hcCCceecccC-------------CcceeeeeeCCCccccccc
Confidence 22334577777 7889999999999999864
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1.9e-13 Score=132.52 Aligned_cols=411 Identities=13% Similarity=0.166 Sum_probs=254.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HH-HHHHHHHHHHhcC----------
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN--AE-AADHWFEEAKERH---------- 396 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~--~~-~A~~~~~~~~~~~---------- 396 (798)
.+.+-|.|+.+. ..|.+.++.-+|+.|...|++.+...-..|+...+-.+. .- .-.+.|-.|...|
T Consensus 115 ~V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 444667777665 468899999999999999988888877777765443222 11 1112222222221
Q ss_pred ---------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003749 397 ---------ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (798)
Q Consensus 397 ---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (798)
.+-+..++..||.+.|+--..+.|.+++++..+.....+..++|.+|.+-.-.- ..++..+|....+
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhc
Confidence 123556777788888888888888888887777666777777887775543222 2567777777777
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHc----CCC
Q 003749 468 SPSIISYGCLINLYTKIGKVSKA----LEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWA-NVFAVFEDVMRD----GLK 538 (798)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~----g~~ 538 (798)
.||..|+|.++++..+.|+++.| ++++.+|++.|+.|...+|..+|..+++.++-. .+..++.++... .++
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 88888888888888888876644 456777777888888888888877777766543 344444444332 111
Q ss_pred ----CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC----CCC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003749 539 ----PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER----HRP---TSRTFMPIIHGFARAGEMKRALEIFDMMRRSGC 607 (798)
Q Consensus 539 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 607 (798)
-|...|...+..|.+..+.+-|.++..-+.... +.+ ....|..+..+.++....+.....|+.|.-.-.
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 144556666777777777777776665554321 111 123345556666677777777777777765555
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-Ch--------H-----HHHHHH----
Q 003749 608 IPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLG-DT--------G-----KAFEYF---- 669 (798)
Q Consensus 608 ~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g-~~--------~-----~A~~~~---- 669 (798)
.|+..+...++.+..-.++++-.-+++.+++..|...+...-..++..+++.. +. . -|..++
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e 509 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYE 509 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777777777777777664444444444444444433 11 0 011111
Q ss_pred ---HHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC--C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 670 ---TKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK--I--PRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (798)
Q Consensus 670 ---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (798)
.++. ..+......+...-.+.+.|+.++|++++..+...+ + .|......-+++.-.+..+...|+.+++-|
T Consensus 510 ~~~~R~r--~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 510 SQPIRQR--AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hhHHHHH--hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1122 223344556666666777888888888777775432 1 122223335555566677777777777777
Q ss_pred HHcCC
Q 003749 743 KQEGV 747 (798)
Q Consensus 743 ~~~g~ 747 (798)
...++
T Consensus 588 ~~~n~ 592 (625)
T KOG4422|consen 588 SAFNL 592 (625)
T ss_pred HHcCc
Confidence 65543
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=5.9e-12 Score=123.97 Aligned_cols=450 Identities=14% Similarity=0.126 Sum_probs=343.6
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
+...|....+.=..++++..|+.+|++++... ..+...|...+.+=.++..+..|..++++.+.. ++.-...|...+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 33445555566667889999999999999875 457778888889999999999999999999875 2323345666677
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (798)
+--..|++..|.++|++..+- .|+..+|.+.|..-.+.+.++.|..++++..-. .|++..|...+..-.+.|+...
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 777789999999999998864 789999999999999999999999999999874 6899999999999999999999
Q ss_pred HHHHHHHHHHC-CC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHH---
Q 003749 455 CLIVFERLKEC-GF-SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN--MKTYSMLINGFLKLKDWANVFA--- 527 (798)
Q Consensus 455 A~~~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~--- 527 (798)
|..+|++..+. |- ..+...+.++...=.++..++.|.-+|+-.++. ++.+ ...|......--+-|+......
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 99999998764 11 112345555555556677889999999988875 2333 4455555554445566544433
Q ss_pred -----HHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCc-ccHHHHHHH--------HHhcCCHH
Q 003749 528 -----VFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS-RTFMPIIHG--------FARAGEMK 593 (798)
Q Consensus 528 -----~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~--------~~~~~~~~ 593 (798)
-|+.+++.+.. |-.+|-..++.-...|+.+...++|++.+..-..... ..|.-.|-. -....+.+
T Consensus 305 ~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 24555555444 7888999999999999999999999999876432111 222222211 13468899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003749 594 RALEIFDMMRRSGCIPTVHTFNALIL----GLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYF 669 (798)
Q Consensus 594 ~a~~~~~~~~~~~~~p~~~~~~~li~----~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 669 (798)
.+.++|+..++. +.-...||.-+=. -..+..++..|.+++...+ |..|-..+|...|..-.+.++++...+++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999998884 2224455544433 3346788999999998876 55888999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003749 670 TKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK-IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQ 748 (798)
Q Consensus 670 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 748 (798)
++.++.++. +..+|......-...|+.+.|..+|+-++.+. +.-....|-..|+-=...|.++.|..+++++++. .
T Consensus 461 Ekfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t 537 (677)
T KOG1915|consen 461 EKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--T 537 (677)
T ss_pred HHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--c
Confidence 999998866 88899998888889999999999999998753 2223456777777778899999999999999985 3
Q ss_pred CCHHHHHHHH
Q 003749 749 PDVHTYTSFI 758 (798)
Q Consensus 749 pd~~~~~~l~ 758 (798)
....+|.++.
T Consensus 538 ~h~kvWisFA 547 (677)
T KOG1915|consen 538 QHVKVWISFA 547 (677)
T ss_pred ccchHHHhHH
Confidence 3444666554
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=8.4e-14 Score=137.47 Aligned_cols=419 Identities=12% Similarity=0.036 Sum_probs=251.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPT-LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS-LVTYSIIVGGF 376 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~ 376 (798)
+-...+-|.++|++++|++.|.+.+.. .|| ...|.....+|...|+|++..+..-+.++.+ |+ +..+.--.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 445678899999999999999999997 677 7788999999999999999999998888853 44 55677777888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCCHH
Q 003749 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID---APIDIYHMMMDGYTIIGNEE 453 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~~~~~l~~~~~~~g~~~ 453 (798)
-..|++++|+.=..-..-.+-.-|..+.-.+=+.+- ..|....++-.+.+-. |+.....+....+...
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~---- 264 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD---- 264 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc----
Confidence 888888888643322211111111111111111111 1222222222221112 2222222222222100
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHH----HHHc-CCHHHHHHHHHHHHHC---CCCCC---------HHHHHHHHHHH
Q 003749 454 KCLIVFERLKECGFSPSIISYGCLINL----YTKI-GKVSKALEVSKVMKSS---GIKHN---------MKTYSMLINGF 516 (798)
Q Consensus 454 ~A~~~~~~~~~~~~~~~~~~~~~li~~----~~~~-g~~~~A~~~~~~m~~~---~~~~~---------~~~~~~ll~~~ 516 (798)
.......+.......+... +... ..+..|.+.+.+-... ....+ ..+...-...+
T Consensus 265 --------~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 265 --------PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFH 336 (606)
T ss_pred --------ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhh
Confidence 0000000000011111111 1110 1223333332222110 00111 11222222234
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 003749 517 LKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRAL 596 (798)
Q Consensus 517 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 596 (798)
.-.|+...+..-|+..++....+ ...|-.+..+|....+.++..+.|.+..+.+.. +..+|-.-...+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 44677888888888887765542 233667777888888888888888888877654 5566666666667777888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 597 EIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG 676 (798)
Q Consensus 597 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~ 676 (798)
.-|++.+..... ++..|--+..+..+.+++++++..|++.+++ ++-....|+.....+...+++++|.+.|+..++..
T Consensus 415 aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 888888876544 5666666666777788888888888888765 34445678888888888888888888888887653
Q ss_pred CC-----CCHH--HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 677 LE-----LDVF--TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 677 ~~-----~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
.. .+.. +.-.++.. --.+++..|..+++++.+.+ +.....|..|...-...|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 1211 11222211 12377888888888888766 45556788888888888888888888888654
No 38
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=3.6e-17 Score=142.87 Aligned_cols=84 Identities=26% Similarity=0.483 Sum_probs=79.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||+||++++++++|+++|++||.|.+++++.| +.||+++|||||+|++.++|++|++.| |+..|+|+.|+|+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~kGfaFV~F~~~e~A~~Al~~l--ng~~i~Gr~l~V~ 109 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVD-RETGRSRGFGFVNFNDEGAATAAISEM--DGKELNGRHIRVN 109 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 3458999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 110 ~a~~~~~ 116 (144)
T PLN03134 110 PANDRPS 116 (144)
T ss_pred eCCcCCC
Confidence 9977643
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.5e-12 Score=127.98 Aligned_cols=363 Identities=13% Similarity=0.041 Sum_probs=186.5
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh--hHH
Q 003749 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAI--IYG 405 (798)
Q Consensus 328 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~ 405 (798)
.-|...+-.....+.+.|....|++.|.+.+.. .+..-..|..|..... +.+.+.. ... +...|.. .-.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~~e~~~~----l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---DIEILSI----LVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---hHHHHHH----HHh-cCcccchHHHHH
Confidence 344444444445555556666666666555543 2333334444333322 1111111 110 1111111 111
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHH
Q 003749 406 NIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF--SPSIISYGCLINLYTK 483 (798)
Q Consensus 406 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~ 483 (798)
-+..++-...+.+++.+-...+...|+..+...-+..+.++....+++.|+.+|+++++.+. --|..+|..++- .+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HH
Confidence 23344555556666666666666666555555555555555666666666666666665422 113444444432 22
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 003749 484 IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHI 563 (798)
Q Consensus 484 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 563 (798)
..+-.-+.-...-..-. +-...|..++.+.|+-.++.++|...|+..++.+.. ....|+.+..-|....+...|+..
T Consensus 310 ~~~skLs~LA~~v~~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDKSKLSYLAQNVSNID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhhHHHHHHHHHHHHhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 22211111111111111 123345555666666666666666666666665443 455666666666666666666666
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003749 564 VKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGIS 643 (798)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 643 (798)
|+..++.+.. |-..|-.|.++|.-.+...-|+-.|+++...... |...|.+|..+|.+.++.++|++.|......+ .
T Consensus 387 YRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 6666665443 6666666666666666666666666666654332 56666666666666666666666666666554 2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003749 644 PNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE----GLELD--VFTYEALLKACCKSGRMQSALAVTKEM 707 (798)
Q Consensus 644 p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (798)
-+...|..|.+.|.+.++.++|..+|++-++. |...+ ......|..-+.+++++++|..+....
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34456666666666666666666666655442 22212 111122334445555555555554433
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=6.7e-13 Score=129.50 Aligned_cols=436 Identities=13% Similarity=0.099 Sum_probs=279.5
Q ss_pred hhhhHHHHHHHHHHhcCCcc-HHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003749 261 KEREWHRREFRKAVETQPEN-WQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIH 339 (798)
Q Consensus 261 ~~~~~a~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 339 (798)
+++..|++.|+-+++--|.- -..-+ ...+.+...+.+.|+++.|+..|+...+. .|+..+-..|+-
T Consensus 251 r~fskaikfyrmaldqvpsink~~ri-----------kil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i 317 (840)
T KOG2003|consen 251 REFSKAIKFYRMALDQVPSINKDMRI-----------KILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLII 317 (840)
T ss_pred hhHHHHHHHHHHHHhhccccchhhHH-----------HHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhh
Confidence 34478888888877655531 11111 12344556688999999999999999887 688888777777
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCH------------HHHHHHHHH-----HHhcC--CHHHHHHHHHHHHhcCCCCC
Q 003749 340 AYAVGRDMEEALSCVRKMKEEGIEMSL------------VTYSIIVGG-----FAKMG--NAEAADHWFEEAKERHATLN 400 (798)
Q Consensus 340 ~~~~~g~~~~A~~~~~~m~~~g~~~~~------------~~~~~l~~~-----~~~~g--~~~~A~~~~~~~~~~~~~~~ 400 (798)
++.-.|+-++..+.|.+|+..-..+|. ...+..+.. .-+.+ +-++++-.--+++.--+.++
T Consensus 318 ~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~ 397 (840)
T KOG2003|consen 318 CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPD 397 (840)
T ss_pred hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccc
Confidence 888889999999999999864322222 222221111 11110 01111111111111101111
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 003749 401 AIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINL 480 (798)
Q Consensus 401 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 480 (798)
... -.+..++.++.-.... .-...-..-..-|.++|+++.|++++.-+.+.+-+.-...-+.|-..
T Consensus 398 fa~------------g~dwcle~lk~s~~~~--la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l 463 (840)
T KOG2003|consen 398 FAA------------GCDWCLESLKASQHAE--LAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCAL 463 (840)
T ss_pred hhc------------ccHHHHHHHHHhhhhh--hhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHH
Confidence 100 0111222222111110 00111112344578899999999999888765433223333333322
Q ss_pred H-HH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChH
Q 003749 481 Y-TK-IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMD 558 (798)
Q Consensus 481 ~-~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 558 (798)
+ .+ ..++.+|.++-+.....+ +.+......-.+.-..+|++++|.+.|++.+...-.- ......+.-.+...|+++
T Consensus 464 ~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ld 541 (840)
T KOG2003|consen 464 RFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLD 541 (840)
T ss_pred HHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHH
Confidence 2 22 346777877777766543 3344444333444456799999999999988763221 112223344567889999
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 559 RAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMT 638 (798)
Q Consensus 559 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 638 (798)
+|+..|-++...- ..+...+..+...|--..+...|++++.+.... +..|..+.+-|...|-+.|+-..|.+.+-+--
T Consensus 542 eald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy 619 (840)
T KOG2003|consen 542 EALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY 619 (840)
T ss_pred HHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc
Confidence 9999988775432 226677777888888889999999999887765 44478899999999999999998888765543
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhCCCCCCHH
Q 003749 639 LAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACC-KSGRMQSALAVTKEMSAQKIPRNTF 717 (798)
Q Consensus 639 ~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~ 717 (798)
+. ++-+..+...|...|....-+++++.+|++..- +.|+..-|..++..|. +.|++++|.++++..... ++-|..
T Consensus 620 ry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedld 695 (840)
T KOG2003|consen 620 RY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLD 695 (840)
T ss_pred cc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchH
Confidence 32 456788888899899998899999999998764 4689999988877665 678999999999988754 678888
Q ss_pred HHHHHHHHHHHcCC
Q 003749 718 VYNILIDGWARRGD 731 (798)
Q Consensus 718 ~~~~l~~~~~~~g~ 731 (798)
+..-|+..+...|.
T Consensus 696 clkflvri~~dlgl 709 (840)
T KOG2003|consen 696 CLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHhccccc
Confidence 88888888877663
No 41
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.5e-12 Score=131.37 Aligned_cols=454 Identities=11% Similarity=0.078 Sum_probs=298.1
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH----HHHHc-------C--
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVR----KMKEE-------G-- 361 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~----~m~~~-------g-- 361 (798)
++.....+++++.-.|+++.|..+...-.-. ..|.........++.+..++++|+.++. .+... +
T Consensus 48 dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~ 125 (611)
T KOG1173|consen 48 DPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT 125 (611)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence 5556667889999999999988887765433 3478888888899999999999999987 22110 0
Q ss_pred CCCCH-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 362 IEMSL-----------VTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 362 ~~~~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 430 (798)
+..|. ..+..-...|....++++|...|.+.+.. |...+..+...-. .. .-.+.+.++.+...
T Consensus 126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs-~~-mlt~~Ee~~ll~~l 199 (611)
T KOG1173|consen 126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVS-AH-MLTAQEEFELLESL 199 (611)
T ss_pred eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHH-HH-hcchhHHHHHHhcc
Confidence 01111 11111122345556677777777777665 3333333321111 11 11111112222211
Q ss_pred CC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003749 431 GI----DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM 506 (798)
Q Consensus 431 ~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 506 (798)
.. ..++.....+.........-++....-.+..-.+..-+........+.+...+++.+.+.+++.+.+.. +.+.
T Consensus 200 ~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~ 278 (611)
T KOG1173|consen 200 DLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHL 278 (611)
T ss_pred cHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCc
Confidence 10 011111111111110000001111111101111233355556666777888899999999999888764 4556
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 003749 507 KTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGF 586 (798)
Q Consensus 507 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 586 (798)
..+..-|.++...|+..+...+=.++++.-+. ...+|-++.--|...|+..+|.+.|.+....+.. -...|..+...|
T Consensus 279 ~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsf 356 (611)
T KOG1173|consen 279 PCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSF 356 (611)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHh
Confidence 66666677888888888888888888876444 6778888888888889999999999988766533 356788889999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003749 587 ARAGEMKRALEIFDMMRRSGCIP-TVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKA 665 (798)
Q Consensus 587 ~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A 665 (798)
.-.+.-|+|+..+..+.+.-..- -...| +.--|.+.++++.|.++|.+..... +-|...++.+.-.....+.+.+|
T Consensus 357 a~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A 433 (611)
T KOG1173|consen 357 AGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEA 433 (611)
T ss_pred hhcchHHHHHHHHHHHHHhccCCcchHHH--HHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHH
Confidence 99999999999888776641110 12223 2334677889999999998887653 45667777777777778889999
Q ss_pred HHHHHHHHHc----CCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003749 666 FEYFTKLRNE----GLE--LDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLM 739 (798)
Q Consensus 666 ~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 739 (798)
..+|+..+.. +.+ -...+++.|+.+|.+++.+++|+..+++.+... +.+..++.+++-.|...|+++.|++.|
T Consensus 434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 9999887632 111 134568899999999999999999999998876 788899999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003749 740 QQMKQEGVQPDVHTYTSFINACSKAG 765 (798)
Q Consensus 740 ~~m~~~g~~pd~~~~~~l~~~~~~~g 765 (798)
.+.+. +.||..+...++..+....
T Consensus 513 hKaL~--l~p~n~~~~~lL~~aie~~ 536 (611)
T KOG1173|consen 513 HKALA--LKPDNIFISELLKLAIEDS 536 (611)
T ss_pred HHHHh--cCCccHHHHHHHHHHHHhh
Confidence 99875 7888887777777665553
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=9.4e-12 Score=122.50 Aligned_cols=162 Identities=10% Similarity=0.033 Sum_probs=78.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 543 LYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622 (798)
Q Consensus 543 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 622 (798)
|+..+.+-|.-.++.++|...|++..+.+.. ....|+.+.+-|...++...|++.++.+++.+.. |-..|-.|..+|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHH
Confidence 3444444444445555555555555544332 3344444445555555555555555555444322 4445555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003749 623 EKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALA 702 (798)
Q Consensus 623 ~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 702 (798)
-.+...-|+-.|++..... +.|...|.+|..+|.+.++.++|++.|+.+...|- .+...+..|.+.|-+.++.++|..
T Consensus 410 im~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHH
Confidence 5555555555555544432 33444555555555555555555555555544432 134445555555555555555554
Q ss_pred HHHHHH
Q 003749 703 VTKEMS 708 (798)
Q Consensus 703 ~~~~~~ 708 (798)
.+++.+
T Consensus 488 ~yek~v 493 (559)
T KOG1155|consen 488 YYEKYV 493 (559)
T ss_pred HHHHHH
Confidence 444443
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=7.3e-13 Score=130.95 Aligned_cols=410 Identities=12% Similarity=0.049 Sum_probs=269.2
Q ss_pred cCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 003749 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (798)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (798)
|.+.|+. ++|++.|+.++++.|. .+.-|+....+|...|+|+++++.--..++.
T Consensus 125 ~f~~kkY---------~eAIkyY~~AI~l~p~---------------epiFYsNraAcY~~lgd~~~Vied~TkALEl-- 178 (606)
T KOG0547|consen 125 FFRNKKY---------DEAIKYYTQAIELCPD---------------EPIFYSNRAACYESLGDWEKVIEDCTKALEL-- 178 (606)
T ss_pred hhhcccH---------HHHHHHHHHHHhcCCC---------------CchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--
Confidence 5566666 9999999999999885 3667888999999999999999999999887
Q ss_pred CCC-HHHHHHHHHHHHccCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cC--CCCChh
Q 003749 328 EPT-LHVYTNLIHAYAVGRDMEEALSCVRKMK-EEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKE-RH--ATLNAI 402 (798)
Q Consensus 328 ~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~ 402 (798)
.|+ +-.++.-.+++-..|++++|+.-.--.- -.|+. |..+--.+=+.+-+ .|....++-.+ ++ +.|...
T Consensus 179 ~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~ 252 (606)
T KOG0547|consen 179 NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSAT 252 (606)
T ss_pred CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHH
Confidence 344 3367777788888899988876433222 12222 22222122122222 12222222222 22 123333
Q ss_pred hHHHHHHHHHhc------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHC---CCCcC--
Q 003749 403 IYGNIIYAQCQT------RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI-IGNEEKCLIVFERLKEC---GFSPS-- 470 (798)
Q Consensus 403 ~~~~l~~~~~~~------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~---~~~~~-- 470 (798)
...+....+... ...+++-..+.+..+ ..+.. ...+..|...+.+-... ...-+
T Consensus 253 fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~--------------~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~ 318 (606)
T KOG0547|consen 253 FIASYFGSFHADPKPLFDNKSDKSDAALAEALE--------------ALEKGLEEGYLKAYDKATEECLGSESSLSVNEI 318 (606)
T ss_pred HHHHHHhhccccccccccCCCccchhhHHHHHH--------------HHHhhCchhHHHHHHHHHHHhhhhhhhcccccc
Confidence 333333332110 011111111111110 00000 00111222221111100 00001
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003749 471 -------IISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVL 543 (798)
Q Consensus 471 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 543 (798)
..+.......+.-.|+.-.|..-|+..++....++ ..|.-+..+|....+-++.+..|.+..+.+.. |..+
T Consensus 319 d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dv 396 (606)
T KOG0547|consen 319 DAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDV 396 (606)
T ss_pred chhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCch
Confidence 22223333445667899999999999998753332 33777778899999999999999999988766 7788
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 544 YNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVE 623 (798)
Q Consensus 544 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 623 (798)
|..-..++.-.+++++|..-|++.++.... +...|..+..+..|.+++++++..|++.++.-. .....|+.....+..
T Consensus 397 YyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP-~~~Evy~~fAeiLtD 474 (606)
T KOG0547|consen 397 YYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP-NCPEVYNLFAEILTD 474 (606)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHhh
Confidence 888889999999999999999999988654 667777888888899999999999999988643 368899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCC-----CCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003749 624 KRQMEKAIEILDEMTLAGIS-----PNEHTY--TTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGR 696 (798)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~~-----p~~~t~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 696 (798)
.++++.|.+.|+..++.... .+...+ -.++ .+.-.+++..|.+++.++++.+.+ ....|.+|...-...|+
T Consensus 475 qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 475 QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGK 552 (606)
T ss_pred HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhh
Confidence 99999999999998765211 122222 1122 112348999999999999998766 67789999999999999
Q ss_pred hHHHHHHHHHHHh
Q 003749 697 MQSALAVTKEMSA 709 (798)
Q Consensus 697 ~~~A~~~~~~~~~ 709 (798)
+++|+++|++...
T Consensus 553 i~eAielFEksa~ 565 (606)
T KOG0547|consen 553 IDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
No 44
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=3.1e-16 Score=139.13 Aligned_cols=78 Identities=31% Similarity=0.479 Sum_probs=73.0
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++||||+|+++++.+.|++.|++||+|.+..|+.| +.||+|||||||+|.|.++|.+|++.. .-.|+||+-++++|
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd-~~t~rskGyGfVTf~d~~aa~rAc~dp---~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITD-KNTGRSKGYGFVTFRDAEAATRACKDP---NPIIDGRKANCNLA 88 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEec-cCCccccceeeEEeecHHHHHHHhcCC---CCcccccccccchh
Confidence 49999999999999999999999999999999999 999999999999999999999999864 66799999999988
Q ss_pred cc
Q 003749 232 DG 233 (798)
Q Consensus 232 ~~ 233 (798)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 43
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=1.9e-13 Score=140.92 Aligned_cols=267 Identities=12% Similarity=0.068 Sum_probs=170.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARG--IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...-+..+|...+++++|.++|+.+.+.. ..-+.++|.+.+-.+-+. -+---+-+.+++.. +-...+|..+..+
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~---v~Ls~Laq~Li~~~-~~sPesWca~GNc 430 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE---VALSYLAQDLIDTD-PNSPESWCALGNC 430 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh---HHHHHHHHHHHhhC-CCCcHHHHHhcch
Confidence 34456677777888888888888777752 112555677766555321 11122233344432 3356778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (798)
|.-+++.+.|++.|++.+..+.. ..++|+.+..-+.....+|.|...|+..+... +.+-.+|..|.-.|.+.++++.|
T Consensus 431 fSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~A 508 (638)
T KOG1126|consen 431 FSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFA 508 (638)
T ss_pred hhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHH
Confidence 88888888888888887776433 56777777777777777777777777776653 33445666667777777777777
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003749 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD 535 (798)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (798)
+-.|++..+.+.. +.+....+..++.+.|+.|+|+++++++...+.. |.-.--..+..+...+++++|+..++++.+.
T Consensus 509 e~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 509 EFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 7777777765433 5555556666777777777777777777665432 3322223344555567777777777777665
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 003749 536 GLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR 573 (798)
Q Consensus 536 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 573 (798)
-+. +...+..+...|.+.|+.+.|+.-|..+.....+
T Consensus 587 vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 587 VPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred Ccc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 333 4556666667777777777777766666655433
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=3.9e-13 Score=138.62 Aligned_cols=284 Identities=11% Similarity=0.069 Sum_probs=130.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChHHHHHHH
Q 003749 347 MEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHA--TLNAIIYGNIIYAQCQTRNMERAEALV 424 (798)
Q Consensus 347 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 424 (798)
..+|+.+|+++.++ +.-...+...++.+|...+++++|.++|+.+.+... .-+..+|.+.+.-+ .+.-+---+-
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~~v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---HhhHHHHHHH
Confidence 34555555554443 222334445555566666666666666666554421 11334444433221 1111111222
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003749 425 RDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKH 504 (798)
Q Consensus 425 ~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 504 (798)
+++++.. +....+|-.+.++|.-+++++.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+..+... ..
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~r 487 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PR 487 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-ch
Confidence 3333322 223455555555555555555555555555553211 34555555555555555555555555554321 11
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 003749 505 NMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIH 584 (798)
Q Consensus 505 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 584 (798)
+...|--|...|.+.++++.|+-.|++..+.++. +.+....+...+.+.|+.++|+.+|++....+.+ |...--..+.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~ 565 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRAS 565 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHH
Confidence 2223333444555555555555555555544333 4444444445555555555555555555444332 2222222333
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003749 585 GFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLA 640 (798)
Q Consensus 585 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 640 (798)
.+...+++++|+..++++.+.-.. +...|..+...|.+.|+.+.|+.-|.-|.+.
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 444445555555555555443211 3334444444555555555555555444443
No 47
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=5.7e-15 Score=131.48 Aligned_cols=82 Identities=26% Similarity=0.479 Sum_probs=79.5
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|=|.||+.+++|++|+++|.+||.|..+.+.+| +.||.+||||||.|.+.++|.+||+.| ||+.++.-.|+|+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylard-K~TG~~kGFAFVtF~sRddA~rAI~~L--nG~gyd~LILrvE 264 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARD-KETGLSKGFAFVTFESRDDAARAIADL--NGYGYDNLILRVE 264 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEc-cccCcccceEEEEEecHHHHHHHHHHc--cCcccceEEEEEE
Confidence 5678999999999999999999999999999999999 999999999999999999999999999 9999999999999
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
|++++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99886
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.60 E-value=4.6e-12 Score=134.77 Aligned_cols=296 Identities=13% Similarity=0.090 Sum_probs=161.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 003749 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKAL 491 (798)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 491 (798)
...|+++.|++.+.+..+.. +.....+.....++...|+.+.|..++.+..+................+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 34555666665555554432 11122223334445555555555555555544321111112222344455555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 003749 492 EVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER 571 (798)
Q Consensus 492 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 571 (798)
..++.+.+.. +-+...+..+...|...|++++|.+++..+.+.+.. +...+..+-.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~---------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQ---------------------- 229 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHH----------------------
Confidence 5555555443 223344444555555555555555555555444322 1111110000
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003749 572 HRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGC---IPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHT 648 (798)
Q Consensus 572 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t 648 (798)
.........+..+++.+.+..+.+... ..+...+..+...+...|+.++|.+++++..+.. |+...
T Consensus 230 ---------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~ 298 (409)
T TIGR00540 230 ---------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRA 298 (409)
T ss_pred ---------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCccc
Confidence 000011111222222333333333211 1267777778888888888888888888887763 33331
Q ss_pred ---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003749 649 ---YTTIMHGYASLGDTGKAFEYFTKLRNEGLELDV--FTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILI 723 (798)
Q Consensus 649 ---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 723 (798)
...........++.+.+.+.+++..+.... |. ....++.+.|.+.|++++|.++|+........|+...+..+.
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La 377 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAA 377 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHH
Confidence 111112223456778888888888776433 44 677788999999999999999999544433458888888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 003749 724 DGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 724 ~~~~~~g~~~~A~~~~~~m~~ 744 (798)
..+.+.|+.++|.+++++...
T Consensus 378 ~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999887643
No 49
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=1.2e-14 Score=135.13 Aligned_cols=83 Identities=25% Similarity=0.443 Sum_probs=75.9
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|+|+|+|+...|.||+.+|.+||.|.+|.|+.+.| -|||||||+|++.++|.+|.++| +|..+.||+|.|+.
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER---GSKGFGFVTmen~~dadRARa~L--Hgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER---GSKGFGFVTMENPADADRARAEL--HGTVVEGRKIEVNN 170 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC---CCCccceEEecChhhHHHHHHHh--hcceeeceEEEEec
Confidence 35999999999999999999999999999999997633 46999999999999999999999 99999999999999
Q ss_pred ccccchhh
Q 003749 231 DDGRRLKN 238 (798)
Q Consensus 231 ~~~~~~~~ 238 (798)
+..|...+
T Consensus 171 ATarV~n~ 178 (376)
T KOG0125|consen 171 ATARVHNK 178 (376)
T ss_pred cchhhccC
Confidence 98885443
No 50
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.59 E-value=3.1e-14 Score=143.72 Aligned_cols=85 Identities=20% Similarity=0.402 Sum_probs=79.8
Q ss_pred hcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 147 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
.....++|||+|||+++++++|+++|++||.|++|+|++| +.+|+++|||||+|.+.++|.+|++.| |+..+.+++|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d-~~tg~srGyaFVeF~~~e~A~~Ai~~L--nG~~l~gr~i 179 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRD-YKTGYSFGYAFVDFGSEADSQRAIKNL--NGITVRNKRL 179 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCccCcEEEEEEccHHHHHHHHHHc--CCCccCCcee
Confidence 4456779999999999999999999999999999999999 889999999999999999999999999 9999999999
Q ss_pred eeeccccc
Q 003749 227 TVKLDDGR 234 (798)
Q Consensus 227 ~v~~~~~~ 234 (798)
+|.++++.
T Consensus 180 ~V~~a~p~ 187 (346)
T TIGR01659 180 KVSYARPG 187 (346)
T ss_pred eeeccccc
Confidence 99998764
No 51
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.59 E-value=5.5e-15 Score=154.95 Aligned_cols=81 Identities=26% Similarity=0.424 Sum_probs=77.6
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
.+|||+|||+++++++|+++|++||.|.+++|++| +.||++||||||+|.+.++|.+|+..| ||..|+||.|+|.|.
T Consensus 270 ~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d-~~t~~skG~aFV~F~~~~~A~~Ai~~l--nG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 270 YCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRD-LTTNQCKGYGFVSMTNYDEAAMAILSL--NGYTLGNRVLQVSFK 346 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEc-CCCCCccceEEEEECCHHHHHHHHHHh--CCCEECCeEEEEEEc
Confidence 47999999999999999999999999999999999 889999999999999999999999999 999999999999998
Q ss_pred cccc
Q 003749 232 DGRR 235 (798)
Q Consensus 232 ~~~~ 235 (798)
..+.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 7763
No 52
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=3.9e-15 Score=117.81 Aligned_cols=89 Identities=22% Similarity=0.438 Sum_probs=81.8
Q ss_pred hhhhcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc
Q 003749 144 EETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (798)
Q Consensus 144 ~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g 223 (798)
.....+.+++||||||++-++|+.|.++|+++|.|+.|.+-.| +.+..+-|||||+|.+.++|..|++.+ ||+.++.
T Consensus 29 ~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLd-r~kktpCGFCFVeyy~~~dA~~Alryi--sgtrLdd 105 (153)
T KOG0121|consen 29 QLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLD-RFKKTPCGFCFVEYYSRDDAEDALRYI--SGTRLDD 105 (153)
T ss_pred HHHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccc-cCCcCccceEEEEEecchhHHHHHHHh--ccCcccc
Confidence 3445678899999999999999999999999999999999988 888888999999999999999999999 9999999
Q ss_pred eeeeeecccccc
Q 003749 224 RVLTVKLDDGRR 235 (798)
Q Consensus 224 ~~~~v~~~~~~~ 235 (798)
|+|.+.|+-+-.
T Consensus 106 r~ir~D~D~GF~ 117 (153)
T KOG0121|consen 106 RPIRIDWDAGFV 117 (153)
T ss_pred cceeeeccccch
Confidence 999999985543
No 53
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.57 E-value=1.4e-11 Score=131.11 Aligned_cols=121 Identities=12% Similarity=0.059 Sum_probs=65.9
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003749 308 RRGDMHRARQTFENMRARGIEPT-LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAAD 386 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 386 (798)
..|+++.|.+.+.+..+. .|+ ...+-....++.+.|+++.|...+++..+.....+..........+...|+++.|+
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456666666666665554 222 22233334555556666666666666554321111223333455556666666666
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 387 HWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (798)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 431 (798)
..++++.+..+. +..++..+..+|.+.|++++|.+++..+.+.+
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 666666655322 44555566666666666666666666666554
No 54
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.57 E-value=4.2e-10 Score=115.86 Aligned_cols=457 Identities=14% Similarity=0.135 Sum_probs=291.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (798)
|..++.+| ..+++...+.+.+.+.+. ..-...+.....-.+...|+-++|......-+..++. +-++|..++-.+..
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 33444444 677888888888888874 3334445555555566778999999988887775544 67888888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 003749 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIV 458 (798)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (798)
..++++|+++|..+...+. .|...+.-+...-++.++++-..+.-..+.+.. ......|..++.++.-.|++..|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999887743 377888888888888888888887777777653 34456788888888899999999999
Q ss_pred HHHHHHCC-CCcCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003749 459 FERLKECG-FSPSIISYGCLI------NLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFED 531 (798)
Q Consensus 459 ~~~~~~~~-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 531 (798)
++...+.. -.++...|.... ....+.|..++|++.+..-... +......-.+-...+.+.++.++|..+|..
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 98887653 245555554433 3456678888888877665443 222233344556778889999999999999
Q ss_pred HHHcCCCCCHHHHHH-HHHHHHcCCChHHHH-HHHHHHHHCCCCCCcccHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCC
Q 003749 532 VMRDGLKPDVVLYNN-IIRAFCGMGNMDRAI-HIVKEMQKERHRPTSRTFMPIIHGFARAGEM-KRALEIFDMMRRSGCI 608 (798)
Q Consensus 532 ~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~ 608 (798)
++.. .||..-|+. +..++.+-.+.-+++ .+|....+.-. .......+--.......+ +..-.++..+.+.|+.
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~--r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYP--RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc--ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 8886 445555444 444443333333343 55555544311 111111111111111222 3334455666666654
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC----------CCCCHH--HHHHHHHHHHhcCChHHHHHHHHHH
Q 003749 609 PTVHTFNALILGLVEKRQMEKAIEILDEMTL----AG----------ISPNEH--TYTTIMHGYASLGDTGKAFEYFTKL 672 (798)
Q Consensus 609 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~----------~~p~~~--t~~~li~~~~~~g~~~~A~~~~~~~ 672 (798)
.++..+...|-.-...+-..++.-.+.. .+ -.|... ++..++..+-+.|+++.|..+++.+
T Consensus 321 ---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 ---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred ---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2344444433322222211111111111 00 134443 4456778888999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003749 673 RNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVH 752 (798)
Q Consensus 673 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 752 (798)
++.... -...|..-.+++...|++++|...+++..+.+ .+|..+-.--+.-..+..+.++|.++.....+.|. +..
T Consensus 398 IdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~ 473 (700)
T KOG1156|consen 398 IDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAV 473 (700)
T ss_pred hccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chh
Confidence 876422 24556666788999999999999999998876 34544444556666788899999999998888775 222
Q ss_pred --------HHHHH--HHHHHHcCCcccccc
Q 003749 753 --------TYTSF--INACSKAGDMQVRFS 772 (798)
Q Consensus 753 --------~~~~l--~~~~~~~g~~~~a~~ 772 (798)
.|-.+ ..+|.+.|++.+|++
T Consensus 474 ~~L~~mqcmWf~~E~g~ay~r~~k~g~ALK 503 (700)
T KOG1156|consen 474 NNLAEMQCMWFQLEDGEAYLRQNKLGLALK 503 (700)
T ss_pred hhHHHhhhHHHhHhhhHHHHHHHHHHHHHH
Confidence 12222 456677776655543
No 55
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=2.6e-11 Score=128.26 Aligned_cols=221 Identities=10% Similarity=0.049 Sum_probs=95.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH
Q 003749 444 DGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM-------KTYSMLINGF 516 (798)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~ll~~~ 516 (798)
..+...|+++.|...++++.+.... +......+...|.+.|++++|.+++..+.+.+..... ..|..++...
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443221 3444444445555555555555555555444322111 0111112222
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 003749 517 LKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRAL 596 (798)
Q Consensus 517 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 596 (798)
....+.+...++++.+.+. ...+......+...+...|+.++|.+++++..+.. ++. -..++.+....++.++++
T Consensus 240 ~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~--~l~~l~~~l~~~~~~~al 314 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDE--RLVLLIPRLKTNNPEQLE 314 (398)
T ss_pred HHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCH--HHHHHHhhccCCChHHHH
Confidence 2222333333333333221 11234444455555555555555555555554421 121 111122222335555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003749 597 EIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLR 673 (798)
Q Consensus 597 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 673 (798)
+..+...+.... |...+.++...+.+.+++++|.+.|+.+.+. .|+..+|..+..++.+.|+.++|.+++++..
T Consensus 315 ~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 315 KVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555554443322 4444445555555555555555555555443 3555555555555555555555555555443
No 56
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=1.7e-14 Score=145.75 Aligned_cols=261 Identities=18% Similarity=0.197 Sum_probs=81.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 003749 476 CLINLYTKIGKVSKALEVSKVMKSSG-IKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGM 554 (798)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 554 (798)
.+...+.+.|++++|++++++..... ...+...|..+...+...++++.|+..++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 33555566666666666664433322 1233444444555555566666666666666655433 34445555555 466
Q ss_pred CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003749 555 GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSG-CIPTVHTFNALILGLVEKRQMEKAIEI 633 (798)
Q Consensus 555 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~A~~~ 633 (798)
+++++|..++....+.. .+...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|+++
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666665554432 244455556666666667777666666655332 223555666666666666777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 003749 634 LDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIP 713 (798)
Q Consensus 634 ~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 713 (798)
+++.++.. +.|......++..+...|+.+++.++++...... ..|...+..+..+|...|+.++|+.++++....+ +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 76666553 2235556666666666666666666666665543 2234455666666666677777777776666544 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003749 714 RNTFVYNILIDGWARRGDVWEAADLMQQMK 743 (798)
Q Consensus 714 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (798)
.|......+.+++...|+.++|.++.++..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 566666666667767777777766666543
No 57
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=6.8e-15 Score=134.87 Aligned_cols=86 Identities=28% Similarity=0.514 Sum_probs=81.5
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+-++|||+-|+++++|.+|+..|++||.|+.|+||+| +.||+++|||||+|+++.+...|.+.. +|..|+|+.|.|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d-~vTgkskGYAFIeye~erdm~~AYK~a--dG~~Idgrri~V 175 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRD-KVTGKSKGYAFIEYEHERDMKAAYKDA--DGIKIDGRRILV 175 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeee-cccCCccceEEEEeccHHHHHHHHHhc--cCceecCcEEEE
Confidence 45679999999999999999999999999999999999 999999999999999999999999998 999999999999
Q ss_pred ecccccchh
Q 003749 229 KLDDGRRLK 237 (798)
Q Consensus 229 ~~~~~~~~~ 237 (798)
.+-+.+.+.
T Consensus 176 DvERgRTvk 184 (335)
T KOG0113|consen 176 DVERGRTVK 184 (335)
T ss_pred Eeccccccc
Confidence 998877655
No 58
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=3e-11 Score=127.74 Aligned_cols=252 Identities=12% Similarity=0.059 Sum_probs=148.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 003749 482 TKIGKVSKALEVSKVMKSSGIKHNMKTY--SMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDR 559 (798)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 559 (798)
.+.|+++.|.+.+.++.+. .++.... ......+...|+++.|...++++.+..+. +......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHH
Confidence 4445555555555544442 1222111 12233444445555555555555444333 34444444555555555555
Q ss_pred HHHHHHHHHHCCCCCCc-------ccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003749 560 AIHIVKEMQKERHRPTS-------RTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIE 632 (798)
Q Consensus 560 A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 632 (798)
|..++..+.+.....+. ..|..++....+..+.+...++++.+.+. ...+......+...+...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555444322111 11222222223333445555555554322 12366777778888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 003749 633 ILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKI 712 (798)
Q Consensus 633 ~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 712 (798)
++++..+. .++.... ++.+....++.+++++..+...+...+ |...+..+...|.+.|++++|.+.|+.+.+..
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~- 358 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQR- 358 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-
Confidence 88887764 3444221 223334558888888888888876543 67778888888888888888888888888754
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 713 PRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 713 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
|+...|..|..++.+.|+.++|.+++++-..
T Consensus 359 -P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 359 -PDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7888888888888888888888888887654
No 59
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=4.3e-14 Score=142.85 Aligned_cols=258 Identities=14% Similarity=0.119 Sum_probs=69.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 003749 373 VGGFAKMGNAEAADHWFEEAKERH-ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (798)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 451 (798)
...+.+.|++++|++++++..... ...|...|..+...+...+++++|++.++++...+. .+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 334444444444444443322221 122333333333344444444444444444444321 123333333333 34444
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003749 452 EEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSG-IKHNMKTYSMLINGFLKLKDWANVFAVFE 530 (798)
Q Consensus 452 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 530 (798)
+++|..++.+..+.. .+...+..++..+...++++++.++++.+.... ...+...|..+...+.+.|+.++|++.|+
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444444433321 233344445555555555555555555544321 22344455555555555555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003749 531 DVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPT 610 (798)
Q Consensus 531 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 610 (798)
+.++..+. |....+.++..+...|+.+++..+++...+.. ..+...+..+..+|...|+.++|+..|++..+.... |
T Consensus 171 ~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d 247 (280)
T PF13429_consen 171 KALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-D 247 (280)
T ss_dssp HHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--
T ss_pred HHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-c
Confidence 55554333 34455555555555555555555555544432 223444555555566666666666666665554322 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 611 VHTFNALILGLVEKRQMEKAIEILDEM 637 (798)
Q Consensus 611 ~~~~~~li~~~~~~~~~~~A~~~~~~m 637 (798)
..+...+..++.+.|+.++|..+..+.
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 555555555566666666666555543
No 60
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=7.3e-15 Score=123.73 Aligned_cols=80 Identities=29% Similarity=0.586 Sum_probs=74.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
-.++||||||+..+++.||+.+|.+||.+..|.|... +.|||||||+++.+|..|+..| +|..|.|..++|+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn------PPGfAFVEFed~RDA~DAvr~L--DG~~~cG~r~rVE 80 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN------PPGFAFVEFEDPRDAEDAVRYL--DGKDICGSRIRVE 80 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec------CCCceEEeccCcccHHHHHhhc--CCccccCceEEEE
Confidence 3579999999999999999999999999999999875 4899999999999999999999 9999999999999
Q ss_pred cccccchh
Q 003749 230 LDDGRRLK 237 (798)
Q Consensus 230 ~~~~~~~~ 237 (798)
++......
T Consensus 81 ~S~G~~r~ 88 (195)
T KOG0107|consen 81 LSTGRPRG 88 (195)
T ss_pred eecCCccc
Confidence 99877653
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.55 E-value=1e-09 Score=113.08 Aligned_cols=451 Identities=11% Similarity=0.069 Sum_probs=300.1
Q ss_pred hhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003749 263 REWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYA 342 (798)
Q Consensus 263 ~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 342 (798)
+...++..+.++.+.+. ...+.....-.+...|+-++|....+...+.++ -+-+.|+.+.-.+-
T Consensus 23 YkkgLK~~~~iL~k~~e---------------HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 23 YKKGLKLIKQILKKFPE---------------HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQR 86 (700)
T ss_pred HHhHHHHHHHHHHhCCc---------------cchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHh
Confidence 35556666666666654 233333444445567999999999999888654 36778999999998
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 003749 343 VGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEA 422 (798)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (798)
...+|++|+++|....+.+ +-|...|.-+.-.-++.++++.....-....+... .....|..++.++.-.|+...|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999865 33788888888888899999998888888777643 367788899999999999999999
Q ss_pred HHHHHHHcCC-CCChhhHHHH------HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003749 423 LVRDMEEEGI-DAPIDIYHMM------MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSK 495 (798)
Q Consensus 423 ~~~~m~~~~~-~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 495 (798)
+++..++... .++...+... .......|..++|++.+...... +.-....-..-...+.+.+++++|..++.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 9999988652 3444444322 23446778888888887766543 11122333455788999999999999999
Q ss_pred HHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 003749 496 VMKSSGIKHNMKTYS-MLINGFLKLKDWANVF-AVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR 573 (798)
Q Consensus 496 ~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 573 (798)
.++..+ ||...|. .+..++.+-.+.-++. .+|....+.-.. ....-..=+..+....-.+..-.++..+.+.|+.
T Consensus 244 ~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 244 RLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 999874 5555444 4455554344444444 666655443111 1111111111111111233444566677777754
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHHH----cC----------CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 003749 574 PTSRTFMPIIHGFARAGEMKRALEIFDMMRR----SG----------CIPTVHTFN--ALILGLVEKRQMEKAIEILDEM 637 (798)
Q Consensus 574 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~----------~~p~~~~~~--~li~~~~~~~~~~~A~~~~~~m 637 (798)
+ ++..+...|-.-...+-..++.-.+.. .| -.|....|+ .++..+-+.|+++.|...++..
T Consensus 321 ~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 S---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred c---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3 444444444332222212222222211 11 135555554 4566788999999999999999
Q ss_pred HHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH
Q 003749 638 TLAGISPNE-HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNT 716 (798)
Q Consensus 638 ~~~~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 716 (798)
+.. .|+. ..|..-.+.+...|++++|..++++..+.+. +|..+-..-..-..++++.++|.++.....+.|. +.
T Consensus 398 IdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~ 472 (700)
T KOG1156|consen 398 IDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GA 472 (700)
T ss_pred hcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--ch
Confidence 876 5664 4566677889999999999999999998864 4665555666667789999999999998887663 22
Q ss_pred H--------HHHH--HHHHHHHcCCHHHHHHHHHHHH
Q 003749 717 F--------VYNI--LIDGWARRGDVWEAADLMQQMK 743 (798)
Q Consensus 717 ~--------~~~~--l~~~~~~~g~~~~A~~~~~~m~ 743 (798)
. .|-. =+.+|.+.|++.+|++=|...-
T Consensus 473 ~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 473 VNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 2 1221 2457888888888887666654
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=2.2e-11 Score=114.54 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=76.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHH
Q 003749 334 YTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLN---AIIYGNIIYA 410 (798)
Q Consensus 334 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~ 410 (798)
|-.=++.+. ..+.++|.++|-+|.+.. +-...+..+|.+.|.+.|.+|.|+++...+.++--.+. ..+...|..-
T Consensus 39 Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 39 YVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 333344333 356788888888888753 22556677788888888888888888887776511110 1233344555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003749 411 QCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465 (798)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (798)
|...|-++.|+++|..+.+.+ ..-......|+..|-...+|++|+++-.++...
T Consensus 117 ym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~ 170 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKL 170 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 666666666666666666543 223445555555555555555555555555554
No 63
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=5.7e-11 Score=112.81 Aligned_cols=423 Identities=12% Similarity=0.150 Sum_probs=238.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003749 301 LMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG 380 (798)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 380 (798)
.+..+|.+.|++++|+..|..+.+.. .++...+-.|.-++.-.|.+.+|..+-.+..+ +...-..|+....+.|
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhC
Confidence 35566777788888888877777654 44555666666666666777777776544432 3444455556666677
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCCHHHHHHHH
Q 003749 381 NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHM-MMDGYTIIGNEEKCLIVF 459 (798)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~ 459 (798)
+-++-..+.+.+... ..--.+|.......-.+.+|++++++....+ ++-...|. +.-+|.+..-++-+.+++
T Consensus 136 dEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred cHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence 766666666655432 1233344555555566777888887777653 23333333 335566777777777777
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHH
Q 003749 460 ERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK-----LKDWANVFAVFEDVMR 534 (798)
Q Consensus 460 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~ 534 (798)
.-.++. +.-+...-|.......+.-+-..|.+-.+.+...+-. .|-. +.-+++ -+.-+.|++++-.+.+
T Consensus 209 ~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~----~~~f-~~~l~rHNLVvFrngEgALqVLP~L~~ 282 (557)
T KOG3785|consen 209 KVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ----EYPF-IEYLCRHNLVVFRNGEGALQVLPSLMK 282 (557)
T ss_pred HHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc----cchh-HHHHHHcCeEEEeCCccHHHhchHHHh
Confidence 666554 2223444555544444443333444444444433211 0111 111111 1334566666655554
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHH-----HHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003749 535 DGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPII-----HGFARAGEMKRALEIFDMMRRSGCIP 609 (798)
Q Consensus 535 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~~~~~~~~p 609 (798)
. -...--.|+-.|.+.++..+|..+.+++.-. .|-......+. .-.....++.-|.+.|...-+++..-
T Consensus 283 ~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ec 356 (557)
T KOG3785|consen 283 H----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALEC 356 (557)
T ss_pred h----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccc
Confidence 3 1222334555677888888888877765321 11112222221 11112234566666666655544332
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHH
Q 003749 610 T-VHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTY-EAL 687 (798)
Q Consensus 610 ~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l 687 (798)
| +.--..+...+.-..++++.+..++.....-...|.. --.+..+++..|++.+|.++|-.+....++ |..+| ..|
T Consensus 357 DTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~F-n~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~L 434 (557)
T KOG3785|consen 357 DTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDF-NLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSML 434 (557)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh-hhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHH
Confidence 2 2223445555666677888888887776653333333 334667888888888888888877766555 44444 555
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003749 688 LKACCKSGRMQSALAVTKEMSAQKIPRNTF-VYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYT 755 (798)
Q Consensus 688 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 755 (798)
.++|.+++..+.|+.++-++.. +.+.. ....+...|.+.+.+--|-+.|+++.. ..|+..-|.
T Consensus 435 ArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred HHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC
Confidence 6778888888888877755543 22332 234445667778888778888877764 456666665
No 64
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.2e-14 Score=131.18 Aligned_cols=84 Identities=24% Similarity=0.433 Sum_probs=79.5
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
+....+|||.|..+|+.++|++.|.+||+|.+++|++| ..|+|+||||||.|-+.++|++||..| ||.-|++|.|+-
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD-~~T~KsKGYgFVSf~~k~dAEnAI~~M--nGqWlG~R~IRT 136 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRD-MNTGKSKGYGFVSFPNKEDAENAIQQM--NGQWLGRRTIRT 136 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeec-ccCCcccceeEEeccchHHHHHHHHHh--CCeeeccceeec
Confidence 34568999999999999999999999999999999999 999999999999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
+|+..+.
T Consensus 137 NWATRKp 143 (321)
T KOG0148|consen 137 NWATRKP 143 (321)
T ss_pred cccccCc
Confidence 9996664
No 65
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.53 E-value=2.6e-14 Score=110.19 Aligned_cols=70 Identities=27% Similarity=0.644 Sum_probs=66.6
Q ss_pred eeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 154 ~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
|||+|||.++++++|+++|++||.|..+.+..+ .+|+++|||||+|.+.++|.+|++.+ ||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~--~~~~~~~~a~V~F~~~~~a~~a~~~l--~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN--SSGKSKGYAFVEFESEEDAEKALEEL--NGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE--TTSSEEEEEEEEESSHHHHHHHHHHH--TTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc--ccccccceEEEEEcCHHHHHHHHHHc--CCCEECccCcC
Confidence 799999999999999999999999999999985 67888999999999999999999999 99999999885
No 66
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=1.1e-10 Score=111.00 Aligned_cols=455 Identities=13% Similarity=0.121 Sum_probs=296.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003749 304 NYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE 383 (798)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 383 (798)
.-+....|+..|+.+++.-...+-+-...+-..+..++.+.|++++|+..|..+.+.. .++...+..|..++.-.|.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 3456677889999999887765433223344456677889999999999999888753 568888999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 384 AADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (798)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (798)
+|..+-.+..+ +......|+....+.++-++.......+.+. ..-..+|.......-.+.+|+.+|.+++
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988877643 4455566777778889988888887777653 2334556666666677899999999998
Q ss_pred HCCCCcCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003749 464 ECGFSPSIISYGC-LINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVV 542 (798)
Q Consensus 464 ~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 542 (798)
.. .++....|. +.-+|.+..-++-+.++++-.... +..+....|.......+.-.-..|..-.+.+...+-..
T Consensus 179 ~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--- 252 (557)
T KOG3785|consen 179 QD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--- 252 (557)
T ss_pred hc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc---
Confidence 75 344444444 345678888889888888877765 34455566655555444433334444444544432211
Q ss_pred HHHHHHHHHHcC-----CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 543 LYNNIIRAFCGM-----GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNAL 617 (798)
Q Consensus 543 ~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 617 (798)
| -.+.-+++. .+-+.|++++--+.+. -......|+--|.+.+++.+|..+.+++.- ..|.......+
T Consensus 253 -~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgv 324 (557)
T KOG3785|consen 253 -Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGV 324 (557)
T ss_pred -c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHH
Confidence 1 122233333 3456788777665543 122334456678899999999998876532 12223332222
Q ss_pred HHH-H----HhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 618 ILG-L----VEKRQMEKAIEILDEMTLAGISPNE-HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKAC 691 (798)
Q Consensus 618 i~~-~----~~~~~~~~A~~~~~~m~~~~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 691 (798)
+.+ + .....+.-|...|+-.-+.+..-|. .--.++..++.-...+++.+-++..+.+.-...|.+.|| +..++
T Consensus 325 v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk 403 (557)
T KOG3785|consen 325 VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAK 403 (557)
T ss_pred HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHH
Confidence 221 1 1223455677777655444433222 123445556666677899999998888765554555544 77899
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCcccc
Q 003749 692 CKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTY-TSFINACSKAGDMQVR 770 (798)
Q Consensus 692 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~-~~l~~~~~~~g~~~~a 770 (798)
+..|++.+|+++|-.+....+..+......|.++|.+.|..+-|..++-++. -.-+..+. ..+.+-|.+.|++--|
T Consensus 404 ~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyya 480 (557)
T KOG3785|consen 404 LATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYA 480 (557)
T ss_pred HHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888876655444455677889999999999988866553 23334333 3445788888887655
Q ss_pred cccc-ccchhhhhhhhhh
Q 003749 771 FSIP-MLTKFYLFSFIWF 787 (798)
Q Consensus 771 ~~~~-~~~~~~~~~~~w~ 787 (798)
.+.. ++.+..+.-=-|.
T Consensus 481 aKAFd~lE~lDP~pEnWe 498 (557)
T KOG3785|consen 481 AKAFDELEILDPTPENWE 498 (557)
T ss_pred HHhhhHHHccCCCccccC
Confidence 5553 3334445555673
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=4.1e-10 Score=114.12 Aligned_cols=463 Identities=11% Similarity=0.030 Sum_probs=314.0
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
+..-+..+++-+....++.-|+-+-++....+ .|....-.+..+|.-.|+++.|..++..-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 34456666777777778888988888888765 45555556778888889999988887654322 248888899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhc--C-----------CCCChh-----------hHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 375 GFAKMGNAEAADHWFEEAKER--H-----------ATLNAI-----------IYGNIIYAQCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~--~-----------~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 430 (798)
++.+..+|+.|+.++...... . ...|.. .+..-..+|....++++|.+.|++.+..
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~ 170 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA 170 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence 999999999999998832100 0 000111 1111123345556677777777777654
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003749 431 GIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF----SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM 506 (798)
Q Consensus 431 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 506 (798)
.+.- ...+-.|+... .-.+.+.|+.+..... ..+......+.....-...-++....-....-.++.-+.
T Consensus 171 D~~c-~Ea~~~lvs~~-----mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~ 244 (611)
T KOG1173|consen 171 DAKC-FEAFEKLVSAH-----MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENL 244 (611)
T ss_pred chhh-HHHHHHHHHHH-----hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcH
Confidence 3221 11222222221 1122222333322111 112222222222111111111111111111112344566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 003749 507 KTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGF 586 (798)
Q Consensus 507 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 586 (798)
.......+-+....++.+..++++.+.+..+- ....+-.-|..+.+.|+..+-..+=.++.+.-+. ...+|-++.--|
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~dpf-h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YY 322 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKDPF-HLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC-CcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHH
Confidence 66677777888899999999999999887443 4555666677888999988888888888877544 788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003749 587 ARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAF 666 (798)
Q Consensus 587 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~ 666 (798)
...|+..+|.+.|.+....+.. -...|-.+...|...+..|.|+..+..+.+.- .-...-+--+.--|.+.++++.|.
T Consensus 323 l~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHH
Confidence 9999999999999998765433 46788999999999999999999998876541 111112233444678899999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003749 667 EYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ------KIPRNTFVYNILIDGWARRGDVWEAADLMQ 740 (798)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 740 (798)
++|.++...... |...++.+.-.....+.+.+|..+|+..+.. ....-.-+++.|+.+|.+.+++++|+..++
T Consensus 401 ~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 999999987654 8889999998889999999999999988731 111123468999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCccccccc
Q 003749 741 QMKQEGVQPDVHTYTSFINACSKAGDMQVRFSI 773 (798)
Q Consensus 741 ~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~ 773 (798)
+.+.. ..-|..++.++.-.|...|.++.|++.
T Consensus 480 ~aL~l-~~k~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 480 KALLL-SPKDASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHHc-CCCchhHHHHHHHHHHHhcChHHHHHH
Confidence 99986 345889999999999999999999876
No 68
>PLN03213 repressor of silencing 3; Provisional
Probab=99.51 E-value=2.8e-14 Score=139.43 Aligned_cols=81 Identities=14% Similarity=0.319 Sum_probs=74.7
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCCh--hHHHHHHHhcccCCeeecceeeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGP--AAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~--~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
..+||||||++++++++|+..|+.||.|.+|.|++ .+| ||||||+|.+. .++.+||..| ||..++||.|+|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR---ETG--RGFAFVEMssdddaEeeKAISaL--NGAEWKGR~LKV 82 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR---TKG--RSFAYIDFSPSSTNSLTKLFSTY--NGCVWKGGRLRL 82 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec---ccC--CceEEEEecCCcHHHHHHHHHHh--cCCeecCceeEE
Confidence 45999999999999999999999999999999994 467 99999999987 7899999999 999999999999
Q ss_pred ecccccchhh
Q 003749 229 KLDDGRRLKN 238 (798)
Q Consensus 229 ~~~~~~~~~~ 238 (798)
+.|++..+.+
T Consensus 83 NKAKP~YLeR 92 (759)
T PLN03213 83 EKAKEHYLAR 92 (759)
T ss_pred eeccHHHHHH
Confidence 9999886654
No 69
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=2.4e-15 Score=127.05 Aligned_cols=85 Identities=25% Similarity=0.513 Sum_probs=79.2
Q ss_pred hhhhcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc
Q 003749 144 EETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (798)
Q Consensus 144 ~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g 223 (798)
.-.+..+++-|||||||++.||.||-..|++||+|.+|.+++| +.||+|+||||+.|++..+-.-|+.-+ ||..|.|
T Consensus 28 WH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRD-k~TGKSKGFaFLcYEDQRSTILAVDN~--NGiki~g 104 (219)
T KOG0126|consen 28 WHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRD-KKTGKSKGFAFLCYEDQRSTILAVDNL--NGIKILG 104 (219)
T ss_pred hhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEec-CCCCcccceEEEEecCccceEEEEecc--CCceecc
Confidence 3456678889999999999999999999999999999999999 999999999999999999999999988 9999999
Q ss_pred eeeeeecc
Q 003749 224 RVLTVKLD 231 (798)
Q Consensus 224 ~~~~v~~~ 231 (798)
|.|+|.--
T Consensus 105 RtirVDHv 112 (219)
T KOG0126|consen 105 RTIRVDHV 112 (219)
T ss_pred eeEEeeec
Confidence 99999643
No 70
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.50 E-value=4e-14 Score=148.43 Aligned_cols=82 Identities=20% Similarity=0.473 Sum_probs=78.0
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
..+|||||||.++++++|+++|++||+|.+|+|++| +.+|+++|||||+|.+.++|.+|++.| ||..|.|+.|+|++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d-~~~g~s~g~afV~f~~~~~A~~Ai~~l--~g~~l~g~~i~v~~ 79 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRD-KVTGQSLGYGFVNYVRPEDAEKAVNSL--NGLRLQNKTIKVSY 79 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEc-CCCCccceEEEEEECcHHHHHHHHhhc--ccEEECCeeEEEEe
Confidence 469999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
+++..
T Consensus 80 a~~~~ 84 (352)
T TIGR01661 80 ARPSS 84 (352)
T ss_pred ecccc
Confidence 87653
No 71
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.49 E-value=3.2e-11 Score=127.76 Aligned_cols=461 Identities=14% Similarity=0.125 Sum_probs=264.1
Q ss_pred cCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003749 292 KKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSI 371 (798)
Q Consensus 292 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 371 (798)
..||..+|.++|.-||..|+.+.|- +|.-|.-.....+...++.++.+....++.+.+. .|...||+.
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 3589999999999999999999888 9999988877778888888888888888777665 467788999
Q ss_pred HHHHHHhcCCHHH---HHHHHHHHHh----cCCCCChh--------------hHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 372 IVGGFAKMGNAEA---ADHWFEEAKE----RHATLNAI--------------IYGNIIYAQCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 372 l~~~~~~~g~~~~---A~~~~~~~~~----~~~~~~~~--------------~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 430 (798)
|..+|...|++.. +.+.++.+.. .|+..-.. .-.+++....-.|-++.+++++..+.-.
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 9999998888655 2222222211 11110000 0112222333334444444444333222
Q ss_pred CCCCChhhHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003749 431 GIDAPIDIYHMMMDGY-TIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTY 509 (798)
Q Consensus 431 ~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 509 (798)
...-.... .++-+ .....+++-..+...+.+ .++..+|..++.+....|+.+.|..++..|++.|+..+...|
T Consensus 169 a~~~p~~v---fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 169 AWNAPFQV---FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred cccchHHH---HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 11100111 12222 222333443333333333 367788888888888888888888888888888877777766
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHH-----------HHHHHH----------
Q 003749 510 SMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH-----------IVKEMQ---------- 568 (798)
Q Consensus 510 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~-----------~~~~~~---------- 568 (798)
..|+-+ .++...+..+++.|.+.|+.|+..|+...+-.+.++|....+.. ++..|.
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~ 319 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLR 319 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHH
Confidence 666544 67777777777888888888887777666555555433221111 111110
Q ss_pred ---------------HCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC-CCHHHHHHHHHHHHhcCCH---
Q 003749 569 ---------------KERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSG--CI-PTVHTFNALILGLVEKRQM--- 627 (798)
Q Consensus 569 ---------------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~-p~~~~~~~li~~~~~~~~~--- 627 (798)
-.|.......|...+. ....|.-++..++...+...- .. .++..|..++.-|.+.-+.
T Consensus 320 ~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~ 398 (1088)
T KOG4318|consen 320 QNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHIC 398 (1088)
T ss_pred HHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHH
Confidence 0111111122221111 222455566666655554321 11 2345555555444432110
Q ss_pred ---HHHHHHHH------------HHHHCCCCCCH----------------------------HHHHHHHHHHHhcCChHH
Q 003749 628 ---EKAIEILD------------EMTLAGISPNE----------------------------HTYTTIMHGYASLGDTGK 664 (798)
Q Consensus 628 ---~~A~~~~~------------~m~~~~~~p~~----------------------------~t~~~li~~~~~~g~~~~ 664 (798)
..|-..+. +.... ..||. ..-+.++..|++.-+..+
T Consensus 399 ~~i~~~~qgls~~l~se~tp~vsell~~-lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK 477 (1088)
T KOG4318|consen 399 SRIYYAGQGLSLNLNSEDTPRVSELLEN-LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLK 477 (1088)
T ss_pred HHHHHHHHHHHhhhchhhhHHHHHHHHH-hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 00000 01111 112344445555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 665 AFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK--IPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (798)
Q Consensus 665 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (798)
++..-++....-+ ...|..||+-++.....++|..+.++..... +.-|..-|..+.+.+.+.+...++..++++|
T Consensus 478 ~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ 554 (1088)
T KOG4318|consen 478 ILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYED 554 (1088)
T ss_pred HHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhh
Confidence 5544444433211 1468889999999999999999998887432 3345567888999999999999999999999
Q ss_pred HHcCCCCC--HHHHHHHHHHHHHcCCccccccccccch
Q 003749 743 KQEGVQPD--VHTYTSFINACSKAGDMQVRFSIPMLTK 778 (798)
Q Consensus 743 ~~~g~~pd--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 778 (798)
.+.-..-+ ..++-.+++.....|+.+.-.+..+...
T Consensus 555 ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv 592 (1088)
T KOG4318|consen 555 KSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV 592 (1088)
T ss_pred hHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH
Confidence 87422222 4567778888888887766666555444
No 72
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.48 E-value=1.8e-09 Score=105.37 Aligned_cols=292 Identities=13% Similarity=0.088 Sum_probs=125.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 003749 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIV 458 (798)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (798)
.|+|..|++...+..+.+.. ....|..-+.+.-+.|+.+.+-+++.+.-+.--..+...+.+........|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 35555555555554433222 23333333444445555555555555555442233444444445555555555555555
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003749 459 FERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK 538 (798)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 538 (798)
.+++.+.+.. +.........+|.+.|++.+...++.++.+.+.-.+...-..
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l--------------------------- 227 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL--------------------------- 227 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------------
Confidence 5555544322 344455555555555555555555555555543322210000
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 539 PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALI 618 (798)
Q Consensus 539 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li 618 (798)
...+|+.+++-....+..+.-...++..... .+-+...-.+++.-+.++|+.++|.++..+..+.+..++ ... .
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~ 301 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-L 301 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-H
Confidence 0122333333333333333333333333221 111233333444444455555555555544444433322 111 1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH
Q 003749 619 LGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQ 698 (798)
Q Consensus 619 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 698 (798)
-.+.+-++.+.-++..++-.... .-+...+.+|...|.+.+.+.+|.+.|+...+. .++..+|+.+.+++.+.|+..
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChH
Confidence 12233344444444443333221 222344445555555555555555555544432 244445555555555555555
Q ss_pred HHHHHHHHHH
Q 003749 699 SALAVTKEMS 708 (798)
Q Consensus 699 ~A~~~~~~~~ 708 (798)
+|.++.++..
T Consensus 379 ~A~~~r~e~L 388 (400)
T COG3071 379 EAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 73
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.48 E-value=1e-13 Score=128.89 Aligned_cols=76 Identities=18% Similarity=0.309 Sum_probs=69.6
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++||||||++.+++++|+++|+.||.|++|+|.+| + .++|||||+|.++++|..|+. | ||..|.||.|+|..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d-~---~~~GfAFVtF~d~eaAe~All-L--nG~~l~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSE-N---ERSQIAYVTFKDPQGAETALL-L--SGATIVDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeec-C---CCCCEEEEEeCcHHHHHHHHH-h--cCCeeCCceEEEEe
Confidence 358999999999999999999999999999999987 3 357999999999999999994 7 99999999999998
Q ss_pred ccc
Q 003749 231 DDG 233 (798)
Q Consensus 231 ~~~ 233 (798)
+..
T Consensus 77 a~~ 79 (260)
T PLN03120 77 AED 79 (260)
T ss_pred ccC
Confidence 753
No 74
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.48 E-value=3.9e-10 Score=109.87 Aligned_cols=295 Identities=14% Similarity=0.138 Sum_probs=209.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 003749 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALE 492 (798)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 492 (798)
..|+|.+|+++..+..+.+ +.....|..-+++--+.|+.+.+-.++.+..+.--.++...+-+........|++..|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4588888888887766665 223444555556667777777777777777765334455666666677777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 003749 493 VSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERH 572 (798)
Q Consensus 493 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 572 (798)
-+.++.+.+ +.+.........+|.+.|++.+...++..+.+.+.-.+...-. |
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~------------------l-------- 227 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR------------------L-------- 227 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH------------------H--------
Confidence 777776654 3356666777777777777777777777777765543322110 0
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003749 573 RPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTI 652 (798)
Q Consensus 573 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~l 652 (798)
...+|..+++-....+..+.-...++..... ..-+...-.+++.-+.++|+.++|.+++.+..+++..++. ..
T Consensus 228 --e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~ 300 (400)
T COG3071 228 --EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CR 300 (400)
T ss_pred --HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HH
Confidence 1234555555555555555555555554332 2235667777888899999999999999999888655552 22
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 003749 653 MHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDV 732 (798)
Q Consensus 653 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 732 (798)
...+.+-++.+.-++..++-...... +...+.+|+..|.+.+.|.+|...|+...+.. ++..+|+.+.++|.+.|+.
T Consensus 301 ~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~--~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 301 LIPRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKLR--PSASDYAELADALDQLGEP 377 (400)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHcCCh
Confidence 23566788888888888877766433 56899999999999999999999999888764 9999999999999999999
Q ss_pred HHHHHHHHHHHHc
Q 003749 733 WEAADLMQQMKQE 745 (798)
Q Consensus 733 ~~A~~~~~~m~~~ 745 (798)
.+|.++.++....
T Consensus 378 ~~A~~~r~e~L~~ 390 (400)
T COG3071 378 EEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987643
No 75
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.48 E-value=1.2e-08 Score=105.04 Aligned_cols=299 Identities=12% Similarity=0.125 Sum_probs=190.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---
Q 003749 470 SIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN------MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPD--- 540 (798)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--- 540 (798)
++..|..-+.. ..|+..+-...|.++... +.|. ...|..+...|-..|+++.|..+|++..+-...--
T Consensus 348 nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 348 NVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred cHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 34455444433 356677777888887764 2221 34677888899999999999999999887543311
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC-----------------CCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 541 VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR-----------------PTSRTFMPIIHGFARAGEMKRALEIFDMMR 603 (798)
Q Consensus 541 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 603 (798)
..+|..-..+=.+..+++.|++++++....-.. -+...|...++..-..|-++....+|++++
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 345555566666777888898888876543111 122345556666666788899999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCC
Q 003749 604 RSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNE-HTYTTIMHGYAS---LGDTGKAFEYFTKLRNEGLEL 679 (798)
Q Consensus 604 ~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~t~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~ 679 (798)
+..+. +....-....-+-...-++++.+++++-+..-..|+. ..|++.+.-+.+ .-.++.|..+|++.++ |..|
T Consensus 505 dLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 505 DLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred HHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 87654 3333322333345566788999998876655334544 356655544332 2358999999999999 5555
Q ss_pred CHHHHHHHHHHH--HHcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003749 680 DVFTYEALLKAC--CKSGRMQSALAVTKEMSAQKIPRN--TFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYT 755 (798)
Q Consensus 680 ~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 755 (798)
...-+-.|+.+- -+.|....|+.+++++... +.+. ...||+.|.-.+..=-+..-..++++.++. -||...-.
T Consensus 583 ~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~ 659 (835)
T KOG2047|consen 583 EHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKARE 659 (835)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHH
Confidence 544333343332 2457888999999987643 2222 236888877655443334455677777764 55654433
Q ss_pred ---HHHHHHHHcCCcccccccccc
Q 003749 756 ---SFINACSKAGDMQVRFSIPML 776 (798)
Q Consensus 756 ---~l~~~~~~~g~~~~a~~~~~~ 776 (798)
.+.+.=++.|.++.|..|.+.
T Consensus 660 mclrFAdlEtklGEidRARaIya~ 683 (835)
T KOG2047|consen 660 MCLRFADLETKLGEIDRARAIYAH 683 (835)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHh
Confidence 334566889999999988543
No 76
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.2e-09 Score=111.24 Aligned_cols=440 Identities=14% Similarity=0.088 Sum_probs=258.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003749 301 LMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG 380 (798)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 380 (798)
+-++.+...|++++|.+...++...+ +.+...+..-+.++.+.++|++|+.+.+.-... ..+.+.+..-+-+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 34677888999999999999999876 667778888888999999999999765443221 111112123334455789
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHH
Q 003749 381 NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA-PIDIYHMMMDGYTIIGNEEKCLIVF 459 (798)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (798)
+.++|+..++-.... +..+...-...+.+.|++++|+++|+.+.+.+.+- +...-..++..-. +...
T Consensus 94 k~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-------~l~~- 161 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-------ALQV- 161 (652)
T ss_pred cHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------hhhH-
Confidence 999999999833222 44466666788999999999999999998876432 1112222221111 1111
Q ss_pred HHHHHCCCCcCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHC--------CCC-----CCHHHH-HHHHHHHHhcCCH
Q 003749 460 ERLKECGFSPSIISYGC---LINLYTKIGKVSKALEVSKVMKSS--------GIK-----HNMKTY-SMLINGFLKLKDW 522 (798)
Q Consensus 460 ~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~--------~~~-----~~~~~~-~~ll~~~~~~~~~ 522 (798)
+.+......+ ..+|.. ....+...|++.+|++++....+. ... -...+. --|...+...|+.
T Consensus 162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 1122221222 223433 345677889999999999888321 111 011111 1234556678999
Q ss_pred HHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCChH-HHHHHHHHHHHCCC----------CCCcccH-HHHHHHH
Q 003749 523 ANVFAVFEDVMRDGLKPDV----VLYNNIIRAFCGMGNMD-RAIHIVKEMQKERH----------RPTSRTF-MPIIHGF 586 (798)
Q Consensus 523 ~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~----------~~~~~~~-~~li~~~ 586 (798)
++|..+|..+++.... |. +.-|.|+.+-....-++ .++..++....... ....... +.++..|
T Consensus 241 ~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887654 33 33344444322222122 12222222211100 0000111 1122222
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 003749 587 ARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGL--VEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGK 664 (798)
Q Consensus 587 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~--~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~ 664 (798)
.+..+.+.++...... ..| ...+.+++..+ ++...+.+|.+++....+....-.....-.++......|+++.
T Consensus 320 --tnk~~q~r~~~a~lp~--~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 320 --TNKMDQVRELSASLPG--MSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred --hhhHHHHHHHHHhCCc--cCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence 2333444444333221 122 33444444332 2233577888888777665433345566677788889999999
Q ss_pred HHHHHH--------HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHH----HHHcC
Q 003749 665 AFEYFT--------KLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ--KIPRNTFVYNILIDG----WARRG 730 (798)
Q Consensus 665 A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~----~~~~g 730 (798)
|++++. .+.+.+..| .+...+...+.+.++.+.|..++.+.+.. .-........++++- -.+.|
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 999998 455444433 35566777788888777777777766531 001222333444433 34789
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003749 731 DVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAG 765 (798)
Q Consensus 731 ~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g 765 (798)
+.++|..+++++.+. ..+|..+...++.+|+...
T Consensus 473 ~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 473 NEEEASSLLEELVKF-NPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred chHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcC
Confidence 999999999999885 3567888899999998764
No 77
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.47 E-value=9.9e-14 Score=147.36 Aligned_cols=80 Identities=26% Similarity=0.468 Sum_probs=76.1
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
+..++||||||++++++++|+++|++||.|++|+++.| +.||+++|||||+|.+.++|.+|++.| ||..|+||.|+|
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D-~~TgkskGfAFVeF~s~e~A~~Ai~~l--nG~~i~GR~IkV 181 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQM--NGQMLGGRNIKV 181 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeec-CCCCCcCCeEEEEeCcHHHHHHHHHhc--CCeEEecceeee
Confidence 45679999999999999999999999999999999999 889999999999999999999999999 999999999999
Q ss_pred ecc
Q 003749 229 KLD 231 (798)
Q Consensus 229 ~~~ 231 (798)
+..
T Consensus 182 ~rp 184 (612)
T TIGR01645 182 GRP 184 (612)
T ss_pred ccc
Confidence 854
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=2.1e-09 Score=109.67 Aligned_cols=446 Identities=12% Similarity=0.083 Sum_probs=265.1
Q ss_pred cCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 003749 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (798)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (798)
++++|+. ++|.+..++++...|. +...+..-+.++.+.++|++|+.+.+.-...
T Consensus 22 ~~~~~e~---------e~a~k~~~Kil~~~pd---------------d~~a~~cKvValIq~~ky~~ALk~ikk~~~~-- 75 (652)
T KOG2376|consen 22 HGKNGEY---------EEAVKTANKILSIVPD---------------DEDAIRCKVVALIQLDKYEDALKLIKKNGAL-- 75 (652)
T ss_pred hccchHH---------HHHHHHHHHHHhcCCC---------------cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--
Confidence 7888887 9999999999999886 5666777888889999999999555443221
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChhhHHH
Q 003749 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL-NAIIYGN 406 (798)
Q Consensus 328 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ 406 (798)
..+...+..-.-+..+.+..++|+..++-+-+ .+..+...-...+.+.|++++|+.+|+.+.+.+..- +...-.+
T Consensus 76 ~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~n 151 (652)
T KOG2376|consen 76 LVINSFFFEKAYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRAN 151 (652)
T ss_pred hhcchhhHHHHHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 11111112223444578999999999983322 245577777888999999999999999998774321 1222222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CC-C-cCH----
Q 003749 407 IIYAQCQTRNMERAEALVRDMEEEGIDA--PIDIYHMMMDGYTIIGNEEKCLIVFERLKEC-------GF-S-PSI---- 471 (798)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~-~-~~~---- 471 (798)
++.+-. .-.+. .+......+ +-..+......+...|++.+|+++++..... +- . -+.
T Consensus 152 l~a~~a----~l~~~----~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el 223 (652)
T KOG2376|consen 152 LLAVAA----ALQVQ----LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEEL 223 (652)
T ss_pred HHHHHH----hhhHH----HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHH
Confidence 221111 11111 122221111 2333445566778899999999999988322 11 1 011
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHH--HHHHHHHHHHHcCC-------
Q 003749 472 -ISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMK----TYSMLINGFLKLKDWA--NVFAVFEDVMRDGL------- 537 (798)
Q Consensus 472 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~--~a~~~~~~~~~~g~------- 537 (798)
.+-..|.-.+-..|+.++|..++..++..+. +|.. .-|.|+.+ ....++- .++..++.......
T Consensus 224 ~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L 301 (652)
T KOG2376|consen 224 NPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKL 301 (652)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHH
Confidence 1223455667889999999999999998763 3432 22333322 2222211 12222222211100
Q ss_pred ---CCCHHHH-HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCH
Q 003749 538 ---KPDVVLY-NNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFA--RAGEMKRALEIFDMMRRSGCIPTV 611 (798)
Q Consensus 538 ---~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~p~~ 611 (798)
.-..+.. +.++.+|. +..+.+.++....... . -...+..++..+. +...+.++.+++....+....-..
T Consensus 302 s~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~--~-p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~ 376 (652)
T KOG2376|consen 302 SKKQKQAIYRNNALLALFT--NKMDQVRELSASLPGM--S-PESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSK 376 (652)
T ss_pred HHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCcc--C-chHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhH
Confidence 0011111 22333332 3333333333322211 1 2334444444433 233567777777777665444345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCH
Q 003749 612 HTFNALILGLVEKRQMEKAIEILD--------EMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE--GLELDV 681 (798)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~--------~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 681 (798)
.+.-+++......|+++.|++++. ...+.+..| .+-..+...+.+.++.+.|..++.+.+.. .-....
T Consensus 377 ~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 377 VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 666677778889999999999998 444444444 34455666777888877788888777643 011122
Q ss_pred H----HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 682 F----TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (798)
Q Consensus 682 ~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (798)
. ++..+...-.+.|+.++|..+++++.+.+ ++|..+...++.+|++. +.+.|..+-+.+
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 2 33333334457799999999999999976 68999999999999987 677777775554
No 79
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.47 E-value=1.9e-13 Score=104.83 Aligned_cols=70 Identities=33% Similarity=0.668 Sum_probs=64.4
Q ss_pred eeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 154 ~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
|||+|||+++++++|+++|+.||.|..+++..+ +. |+++|+|||+|.+.++|.+|+..+ +|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~-~~-~~~~~~a~v~f~~~~~a~~al~~~--~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKN-KD-GQSRGFAFVEFSSEEDAKRALELL--NGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEES-TT-SSEEEEEEEEESSHHHHHHHHHHH--TTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEee-ec-cccCCEEEEEeCCHHHHHHHHHHC--CCcEECCEEcC
Confidence 799999999999999999999999999999997 55 899999999999999999999998 88999999875
No 80
>PRK12370 invasion protein regulator; Provisional
Probab=99.46 E-value=4.8e-11 Score=131.98 Aligned_cols=218 Identities=11% Similarity=0.057 Sum_probs=156.0
Q ss_pred hhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHH---------HcCChHHHHHHHHHHHHCCCCCCH
Q 003749 261 KEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYA---------RRGDMHRARQTFENMRARGIEPTL 331 (798)
Q Consensus 261 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~ 331 (798)
...+.|...|+++++.+|. +...|..+..+|. ..+++++|+..++++.+.+ +.+.
T Consensus 275 ~~~~~A~~~~~~Al~ldP~---------------~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~ 338 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN---------------SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNP 338 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc---------------cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCH
Confidence 3457899999999999887 4444555544443 2345789999999998875 4467
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003749 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (798)
Q Consensus 332 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (798)
..+..+..++...|++++|+..|++.++.+ +.+...|..+...|...|++++|+..|+++.+.+.. +...+..++..+
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~ 416 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWIT 416 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHH
Confidence 778888888888899999999999998875 335778888888899999999999999998887544 333344445556
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 003749 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKAL 491 (798)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 491 (798)
...|++++|++.++++.+...+.+...+..+..+|...|+.++|...+.++.... ..+....+.+...|...| ++|.
T Consensus 417 ~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~ 493 (553)
T PRK12370 417 YYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERAL 493 (553)
T ss_pred HhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHH
Confidence 6678888888888887765423345556777778888888888888888776542 113444555666666666 3666
Q ss_pred HHHHHHHH
Q 003749 492 EVSKVMKS 499 (798)
Q Consensus 492 ~~~~~m~~ 499 (798)
..++.+.+
T Consensus 494 ~~l~~ll~ 501 (553)
T PRK12370 494 PTIREFLE 501 (553)
T ss_pred HHHHHHHH
Confidence 66666554
No 81
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.45 E-value=1.7e-13 Score=145.63 Aligned_cols=82 Identities=18% Similarity=0.327 Sum_probs=77.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++||||||++++++++|+++|++||.|+++++.+| +.+|++||||||+|++.++|.+|++.| |+..|+|+.|+|.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D-~~tgksKGfGFVeFe~~e~A~kAI~am--Ng~elgGr~LrV~ 279 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARA-PTGRGHKGYGFIEYNNLQSQSEAIASM--NLFDLGGQYLRVG 279 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCcCCeEEEEECCHHHHHHHHHHh--CCCeeCCeEEEEE
Confidence 3469999999999999999999999999999999999 789999999999999999999999999 9999999999999
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
++...
T Consensus 280 kAi~p 284 (612)
T TIGR01645 280 KCVTP 284 (612)
T ss_pred ecCCC
Confidence 88654
No 82
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.45 E-value=2e-13 Score=137.90 Aligned_cols=83 Identities=23% Similarity=0.414 Sum_probs=77.0
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc--eeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g--~~~~ 227 (798)
..++|||+|||.++++++|+++|++||.|++++|++| +.+|++||||||+|++.++|.+|++.| |++.+.| ++|+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d-~~tg~~kG~aFV~F~~~e~A~~Ai~~l--ng~~~~g~~~~l~ 268 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRD-KLTGTPRGVAFVRFNKREEAQEAISAL--NNVIPEGGSQPLT 268 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHh--CCCccCCCceeEE
Confidence 3568999999999999999999999999999999998 889999999999999999999999999 9999876 7899
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|.+++.+.
T Consensus 269 V~~a~~~~ 276 (346)
T TIGR01659 269 VRLAEEHG 276 (346)
T ss_pred EEECCccc
Confidence 99987654
No 83
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=4.4e-13 Score=120.59 Aligned_cols=88 Identities=24% Similarity=0.440 Sum_probs=83.6
Q ss_pred hhhcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecce
Q 003749 145 ETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (798)
Q Consensus 145 ~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~ 224 (798)
..+..++|+|||-.||.+..+.+|-+.|-.||.|.+.++..| |.|..||.||||.|+++.+++.||.+| ||+.|+-+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvD-RATNQSKCFGFVSfDNp~SaQaAIqAM--NGFQIGMK 355 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVD-RATNQSKCFGFVSFDNPASAQAAIQAM--NGFQIGMK 355 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeeh-hccccccceeeEecCCchhHHHHHHHh--cchhhhhh
Confidence 346678899999999999999999999999999999999999 999999999999999999999999999 99999999
Q ss_pred eeeeecccccc
Q 003749 225 VLTVKLDDGRR 235 (798)
Q Consensus 225 ~~~v~~~~~~~ 235 (798)
+|+|.+.+++.
T Consensus 356 RLKVQLKRPkd 366 (371)
T KOG0146|consen 356 RLKVQLKRPKD 366 (371)
T ss_pred hhhhhhcCccc
Confidence 99999998874
No 84
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.43 E-value=1.6e-13 Score=118.70 Aligned_cols=78 Identities=23% Similarity=0.427 Sum_probs=75.7
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
..|-|-||.+.++.++|+.+|++||.|.+|.|.+| +.|+.++|||||-|.+..+|+.|+++| +|..|+|+.|.|++|
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrd-r~Tr~sRgFaFVrf~~k~daedA~dam--DG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRD-RYTRQSRGFAFVRFHDKRDAEDALDAM--DGAVLDGRELRVQMA 90 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccc-cccccccceeEEEeeecchHHHHHHhh--cceeeccceeeehhh
Confidence 48999999999999999999999999999999999 999999999999999999999999999 999999999999998
Q ss_pred c
Q 003749 232 D 232 (798)
Q Consensus 232 ~ 232 (798)
+
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 5
No 85
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=3.2e-13 Score=122.13 Aligned_cols=82 Identities=22% Similarity=0.447 Sum_probs=76.3
Q ss_pred hcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 147 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
...++++|||||++..++|++|++.|+.||.|.+|||.++ +||+||-|++.|+|..||..+ |+..|.|..+
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-------qGYaFVrF~tkEaAahAIv~m--Nntei~G~~V 230 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-------QGYAFVRFETKEAAAHAIVQM--NNTEIGGQLV 230 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-------cceEEEEecchhhHHHHHHHh--cCceeCceEE
Confidence 3467899999999999999999999999999999999999 999999999999999999999 9999999999
Q ss_pred eeecccccchh
Q 003749 227 TVKLDDGRRLK 237 (798)
Q Consensus 227 ~v~~~~~~~~~ 237 (798)
++.|-+.....
T Consensus 231 kCsWGKe~~~~ 241 (321)
T KOG0148|consen 231 RCSWGKEGDDG 241 (321)
T ss_pred EEeccccCCCC
Confidence 99998766433
No 86
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.43 E-value=7.6e-09 Score=110.23 Aligned_cols=294 Identities=15% Similarity=0.138 Sum_probs=212.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--
Q 003749 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM-- 379 (798)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~-- 379 (798)
.+..+...|++++|++.++.-... +.............|.+.|+.++|..+|..+++++. .|..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcc
Confidence 345678899999999999886665 333455667888999999999999999999999863 2555556666665322
Q ss_pred ---CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH-HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 003749 380 ---GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNME-RAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (798)
Q Consensus 380 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (798)
.+.+...++|+++...- |...+...+...+..-..|. .+...+..+...|++ .++..|-..|....+..-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 35778889999887763 33333333333333333443 355666777888864 4566777777766666666
Q ss_pred HHHHHHHHHC----C----------CCcCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003749 456 LIVFERLKEC----G----------FSPSI--ISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKL 519 (798)
Q Consensus 456 ~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 519 (798)
..++..+... + -.|.. .++..+...|...|++++|++++++.++.. +..+..|..-...|-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 6666665432 1 12333 344666788999999999999999999873 23366888889999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCccc--------HHHHHHHHHhcCC
Q 003749 520 KDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRT--------FMPIIHGFARAGE 591 (798)
Q Consensus 520 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~~~ 591 (798)
|++.+|.+.++.....+.. |...-+..+..+.+.|++++|.+++....+.+..+.... ......+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999987666 777777888889999999999999999887764322222 1345667899999
Q ss_pred HHHHHHHHHHHHH
Q 003749 592 MKRALEIFDMMRR 604 (798)
Q Consensus 592 ~~~a~~~~~~~~~ 604 (798)
+..|++.|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888776654
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.42 E-value=5.2e-09 Score=110.23 Aligned_cols=410 Identities=13% Similarity=0.050 Sum_probs=250.2
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhH
Q 003749 325 RGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIY 404 (798)
Q Consensus 325 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 404 (798)
..+..|...|-.+.-++...|+++.+.+.|++....- --....|+.+...|.-.|.-..|..++++.......|+..+-
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3455688889999999999999999999999987642 336778999999999999999999999887766544544443
Q ss_pred HHHH-HHHH-hcCChHHHHHHHHHHHHc--CC--CCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCC
Q 003749 405 GNII-YAQC-QTRNMERAEALVRDMEEE--GI--DAPIDIYHMMMDGYTII-----------GNEEKCLIVFERLKECGF 467 (798)
Q Consensus 405 ~~l~-~~~~-~~g~~~~A~~~~~~m~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~ 467 (798)
..++ ..|. +.+.++++++.-.+++.. +. ......|..+.-+|... ....+++..+++..+.+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 3333 3333 567888888887777762 21 12234455555555322 234567777888777644
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 468 SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNI 547 (798)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 547 (798)
. |..+.-.+.--|+..++++.|.+..++..+.+-..+...|..|...+...+++.+|+.+.+.....-.. |......-
T Consensus 476 ~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~ 553 (799)
T KOG4162|consen 476 T-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGK 553 (799)
T ss_pred C-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhh
Confidence 2 222222334457788899999999999998866778889999998999999999999998877654211 22222222
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCC----------------------------CCCCcccHHHHHHHH-HhcCCHHHHHHH
Q 003749 548 IRAFCGMGNMDRAIHIVKEMQKER----------------------------HRPTSRTFMPIIHGF-ARAGEMKRALEI 598 (798)
Q Consensus 548 i~~~~~~g~~~~A~~~~~~~~~~~----------------------------~~~~~~~~~~li~~~-~~~~~~~~a~~~ 598 (798)
+..-...++.++++.....+...- ..-...++..+.... .+.........
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~- 632 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK- 632 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc-
Confidence 222233455555554443332210 000001111111000 00000000000
Q ss_pred HHHHHHcCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003749 599 FDMMRRSGCI--PT------VHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFT 670 (798)
Q Consensus 599 ~~~~~~~~~~--p~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 670 (798)
+...-.. ++ ...|......+.+.++-++|...+.+..... .-....|......+...|.+++|.+.|.
T Consensus 633 ---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 633 ---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred ---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 0000000 11 2234444555666677777776666665432 2334455555566666777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 671 KLRNEGLELDVFTYEALLKACCKSGRMQSALA--VTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 671 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
.....+.. +.....++..++.+.|+-.-|.. ++..+.+.+ +.+...|-.++..+.+.|+.+.|.+.|.-..+
T Consensus 709 ~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 709 VALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 77766543 56667777777777776555555 777777766 56777777777777777777777777776655
No 88
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.41 E-value=5.5e-08 Score=100.22 Aligned_cols=451 Identities=12% Similarity=0.117 Sum_probs=266.8
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRAR-GIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (798)
-++.|-..+.....+|+...-+..|++.+.. -+.-...+|...+...-..+-.+.++.+|++-++. +...-+..+
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyi 176 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYI 176 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHH
Confidence 3456677777778899999999999988764 22223447888888888889999999999999875 445577888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcC------CCCChhhHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCCC--hhhHHHH
Q 003749 374 GGFAKMGNAEAADHWFEEAKERH------ATLNAIIYGNIIYAQCQTRNMER---AEALVRDMEEEGIDAP--IDIYHMM 442 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~m~~~~~~~~--~~~~~~l 442 (798)
..+++.+++++|.+.+......+ .+.+...|.-+....++.-+.-. ...+++.++.+ -+| -..|.+|
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SL 254 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSL 254 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHH
Confidence 88999999999999988875432 23456667766666665544332 33344444433 223 3568999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH----------------------HHHHHHHHHHHHC
Q 003749 443 MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKV----------------------SKALEVSKVMKSS 500 (798)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------------------~~A~~~~~~m~~~ 500 (798)
++-|.+.|.+++|..+|++....- ..+.-|..+.+.|+..... +-.+.-|+.+...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 999999999999999999877641 2344455555555443221 1222223333222
Q ss_pred C-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHcCCChHHHHHH
Q 003749 501 G-----------IKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKP------DVVLYNNIIRAFCGMGNMDRAIHI 563 (798)
Q Consensus 501 ~-----------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~~ 563 (798)
+ -..++..|..-+..+ .|+..+....|.+.++. +.| -...|..+...|...|+++.|..+
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 1 011222333222222 35556666666666553 111 234567777777788888888888
Q ss_pred HHHHHHCCCCCC---cccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------------CHHHHHHHHHHHHh
Q 003749 564 VKEMQKERHRPT---SRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIP-----------------TVHTFNALILGLVE 623 (798)
Q Consensus 564 ~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-----------------~~~~~~~li~~~~~ 623 (798)
|++..+....-- ..+|..-...-.+..+++.|+++++++...--.+ +...|..+++..-.
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 877766543211 1233333334445666777777777665431110 22345555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHc-C--ChHH
Q 003749 624 KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELD-VFTYEALLKACCKS-G--RMQS 699 (798)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g--~~~~ 699 (798)
.|-++....+++++++..+- +..........+..+.-++++.+++++-+..-.-|+ ...|+..+.-+.+. | .++.
T Consensus 490 ~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 67777777777777766532 222222222234455557777777776655433333 34566666555442 2 4778
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHH
Q 003749 700 ALAVTKEMSAQKIPRNTFVYNILID--GWARRGDVWEAADLMQQMKQEGVQPDV--HTYTSFIN 759 (798)
Q Consensus 700 A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~m~~~g~~pd~--~~~~~l~~ 759 (798)
|..+|+++++ +.+|...-+--|+. .=-+.|....|+.++++.... +.+.. ..|+.+|.
T Consensus 569 aRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 569 ARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 8888888887 44443332222222 222467777888888886653 55443 35666654
No 89
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.3e-13 Score=120.23 Aligned_cols=85 Identities=26% Similarity=0.524 Sum_probs=80.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++||||+|..+|+|.-|...|-.||.|++|.+..| -.++|+||||||+|+-.++|.+||..| |+..+.||.|+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlD-yesqkHRgFgFVefe~aEDAaaAiDNM--nesEL~GrtirVN 85 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLD-YESQKHRGFGFVEFEEAEDAAAAIDNM--NESELFGRTIRVN 85 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccc-hhcccccceeEEEeeccchhHHHhhcC--chhhhcceeEEEe
Confidence 3459999999999999999999999999999999999 789999999999999999999999999 9999999999999
Q ss_pred cccccchh
Q 003749 230 LDDGRRLK 237 (798)
Q Consensus 230 ~~~~~~~~ 237 (798)
++++-+..
T Consensus 86 ~AkP~kik 93 (298)
T KOG0111|consen 86 LAKPEKIK 93 (298)
T ss_pred ecCCcccc
Confidence 99988755
No 90
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=3e-13 Score=108.17 Aligned_cols=79 Identities=23% Similarity=0.316 Sum_probs=75.8
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
+-.|||.++.++++|+++.+.|..||+|+++.+..| +.||-.|||+.|+|++.+.|++|+.++ ||..|.|+.|.|.|
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLD-RRtGy~KGYaLvEYet~keAq~A~~~~--Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLD-RRTGYVKGYALVEYETLKEAQAAIDAL--NGAELLGQNVSVDW 148 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccc-cccccccceeeeehHhHHHHHHHHHhc--cchhhhCCceeEEE
Confidence 337999999999999999999999999999999999 999999999999999999999999999 99999999999998
Q ss_pred cc
Q 003749 231 DD 232 (798)
Q Consensus 231 ~~ 232 (798)
+.
T Consensus 149 ~F 150 (170)
T KOG0130|consen 149 CF 150 (170)
T ss_pred EE
Confidence 84
No 91
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.40 E-value=3e-13 Score=114.86 Aligned_cols=82 Identities=28% Similarity=0.490 Sum_probs=77.7
Q ss_pred cccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
..+..+||||||+..++++.|.++|-+.|+|.++++.+| +.+.+++|||||+|.++++|.-|++.| |.+.+.||+|+
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkD-rv~~~~qGygF~Ef~~eedadYAikil--n~VkLYgrpIr 82 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKD-RVTQKHQGYGFAEFRTEEDADYAIKIL--NMVKLYGRPIR 82 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchh-hhcccccceeEEEEechhhhHHHHHHH--HHHHhcCceeE
Confidence 345679999999999999999999999999999999999 889999999999999999999999999 99999999999
Q ss_pred eeccc
Q 003749 228 VKLDD 232 (798)
Q Consensus 228 v~~~~ 232 (798)
|+-+.
T Consensus 83 v~kas 87 (203)
T KOG0131|consen 83 VNKAS 87 (203)
T ss_pred EEecc
Confidence 98876
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.40 E-value=1.3e-09 Score=117.26 Aligned_cols=470 Identities=11% Similarity=0.041 Sum_probs=286.6
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCCHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGI-EMSLVTYSIIVG 374 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~l~~ 374 (798)
...|..|...|...-|...|.+.|+++-+.+ ..+...+......|++..++++|..+.-...+... .--..-|..+.-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 4568889999998889999999999999886 55777889999999999999999998433332210 112233445556
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (798)
.|.+.++...|+.-|+...+.++. |...|..++.+|.+.|++..|.++|.+..... +.+...-.....+.+..|++.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHH
Confidence 678889999999999999887655 88899999999999999999999999888764 2223333444556678899999
Q ss_pred HHHHHHHHHHC------CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHCCCCCCHHHHHHHHHHHHhcCC
Q 003749 455 CLIVFERLKEC------GFSPSIISYGCLINLYTKIGKVSKALEVSKVM-------KSSGIKHNMKTYSMLINGFLKLKD 521 (798)
Q Consensus 455 A~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~~~~~~~~~~~~ll~~~~~~~~ 521 (798)
|+..+..+... +..--..++-.+...+...|-..+|.+++++. .......+...|..+.++|.---.
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q 728 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQ 728 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Confidence 99988877542 11112334444444444445444444444443 333323344444444333321100
Q ss_pred HH------HHHHHHH-HHHHcCC--------------------CCCHHHHHHHHHHHHc----CC----ChHHHHHHHHH
Q 003749 522 WA------NVFAVFE-DVMRDGL--------------------KPDVVLYNNIIRAFCG----MG----NMDRAIHIVKE 566 (798)
Q Consensus 522 ~~------~a~~~~~-~~~~~g~--------------------~~~~~~~~~li~~~~~----~g----~~~~A~~~~~~ 566 (798)
.+ ....++. +....+. ..+..+|..|+..|.+ .| +...|+..+.+
T Consensus 729 ~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kk 808 (1238)
T KOG1127|consen 729 EEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKK 808 (1238)
T ss_pred hcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHH
Confidence 00 0111111 1111111 1123444444443332 11 23356666666
Q ss_pred HHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003749 567 MQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNE 646 (798)
Q Consensus 567 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 646 (798)
.++..-. +..+|+.|.-. ...|.+.-+...|-+.+..... ...+|..+...+.++.+++-|...|...+... +.|.
T Consensus 809 aV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl 884 (1238)
T KOG1127|consen 809 AVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNL 884 (1238)
T ss_pred HHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheeccceeEEecccHHHhhHHHHhhhhcC-chhh
Confidence 6655322 55666666544 5567777777777666554333 56677777777788888888888888777653 4456
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH--HHc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---------CCCC
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKL--RNE--GLELDVFTYEALLKACCKSGRMQSALAVTKEMSA---------QKIP 713 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~--~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~ 713 (798)
..|-.........|+.-++..+|..- ... |--++..-|-+........|+.++-+...+++.. .+.+
T Consensus 885 ~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p 964 (1238)
T KOG1127|consen 885 VQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHP 964 (1238)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCc
Confidence 66766666666778888888888762 222 3233444444444444556665544433333321 1345
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHH----HHHHHHHcCCcccccc
Q 003749 714 RNTFVYNILIDGWARRGDVWEAADLMQQMKQE-GVQPDVHTYTS----FINACSKAGDMQVRFS 772 (798)
Q Consensus 714 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~~~~~----l~~~~~~~g~~~~a~~ 772 (798)
.....|.+.+..+-+.+.+++|.++..+.+.. ..+.|..+|+. +...++..|.++.|..
T Consensus 965 ~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~ 1028 (1238)
T KOG1127|consen 965 QLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKK 1028 (1238)
T ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhh
Confidence 66778888888888888888888887776531 12334445553 3344555566654443
No 93
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=8.5e-11 Score=110.50 Aligned_cols=234 Identities=11% Similarity=0.019 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003749 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (798)
Q Consensus 332 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (798)
..-+-+.++|.+.|.+.+|.+.|+..++. .+-+.||..|...|.+..+...|+.+|.+..+.. +-|+....-+.+++
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHH
Confidence 34467888899999999999988888775 4577788888899999999999999998887762 33555555677888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 003749 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKAL 491 (798)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 491 (798)
-..++.++|.++++...+.. ..++...-.+...|.-.++.+-|+.+|.++++.|+. +...|+.+.-+|.-.+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 88889999999998888764 456677777778888888999999999999988876 7788888888888888898888
Q ss_pred HHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 003749 492 EVSKVMKSSGIKHN--MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQK 569 (798)
Q Consensus 492 ~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 569 (798)
..|.+....--.++ ..+|-.|.......||+..|.+.|+..+.++.. +...++.|.-.-.+.|++++|..++....+
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 88888776533333 346666666667778888888888877766544 556777777777778888888888877665
Q ss_pred CC
Q 003749 570 ER 571 (798)
Q Consensus 570 ~~ 571 (798)
..
T Consensus 458 ~~ 459 (478)
T KOG1129|consen 458 VM 459 (478)
T ss_pred hC
Confidence 53
No 94
>PRK12370 invasion protein regulator; Provisional
Probab=99.39 E-value=2e-10 Score=127.13 Aligned_cols=184 Identities=11% Similarity=-0.001 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003749 312 MHRARQTFENMRARGIEPTLHVYTNLIHAYA---------VGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (798)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~---------~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (798)
+++|+.+|++..+.. +.+...|..+..+|. ..+++++|...+++.++.+ +-+..+|..+...+...|++
T Consensus 277 ~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 456666666666552 122333433333332 1123555555555555543 22455555555555555566
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL 462 (798)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (798)
++|+..|+++.+.+.. +...+..+..+|...|++++|...+++..+.+.. +...+..++..+...|++++|+..++++
T Consensus 355 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 355 IVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 6666666555554322 3445555555555555555555555555554311 1222222333344445555555555554
Q ss_pred HHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 463 KECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKS 499 (798)
Q Consensus 463 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (798)
.+....-+...+..+..+|...|+.++|...+.++..
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 4332111233344444555555555555555555433
No 95
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=7.3e-13 Score=112.33 Aligned_cols=81 Identities=30% Similarity=0.589 Sum_probs=72.2
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
+..++|||||||.+|.+.+|+++|.+||.|.+|.+... -....||||+|+++.+|..||..- +|..++|..|+|
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r----~g~ppfafVeFEd~RDAeDAiygR--dGYdydg~rLRV 77 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR----PGPPPFAFVEFEDPRDAEDAIYGR--DGYDYDGCRLRV 77 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC----CCCCCeeEEEecCccchhhhhhcc--cccccCcceEEE
Confidence 44679999999999999999999999999999988543 334689999999999999999988 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
++++...
T Consensus 78 Efprggr 84 (241)
T KOG0105|consen 78 EFPRGGR 84 (241)
T ss_pred EeccCCC
Confidence 9997653
No 96
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=3.7e-10 Score=111.26 Aligned_cols=198 Identities=15% Similarity=0.127 Sum_probs=111.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
..+..+...|...|++++|++.++++.+.. +.+...+..+...|...|++++|++.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 445566666777777777777777766653 3345566666666777777777777777666653 22455666666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 003749 377 AKMGNAEAADHWFEEAKERHA-TLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (798)
...|++++|++.|+++..... ......+..+..++...|++++|.+.+++..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 667777777777766655321 1123344455555566666666666666555542 22334455555555555555555
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003749 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMK 498 (798)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (798)
..++++..+. ...+...+..++..+...|+.++|..+.+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555555443 12233444444455555555555555544443
No 97
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.37 E-value=1.3e-12 Score=119.11 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=68.3
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
+.+|||+||++.+|+++|+++|+.||.|.+|+|++| ++.+|||||+|.+++++..|+ .| ||..|.+++|.|..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D----~et~gfAfVtF~d~~aaetAl-lL--nGa~l~d~~I~It~ 77 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS----GEYACTAYVTFKDAYALETAV-LL--SGATIVDQRVCITR 77 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC----CCcceEEEEEECCHHHHHHHH-hc--CCCeeCCceEEEEe
Confidence 458999999999999999999999999999999988 455789999999999999999 46 99999999999876
Q ss_pred cc
Q 003749 231 DD 232 (798)
Q Consensus 231 ~~ 232 (798)
..
T Consensus 78 ~~ 79 (243)
T PLN03121 78 WG 79 (243)
T ss_pred Cc
Confidence 53
No 98
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.1e-07 Score=92.78 Aligned_cols=294 Identities=9% Similarity=-0.001 Sum_probs=211.7
Q ss_pred cCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003749 449 IGNEEKCLIVFERLKEC-GFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFA 527 (798)
Q Consensus 449 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 527 (798)
.++...+...+.-+... -++-|+.....+.+++...|+.++|+..|++.+..+ ..+..........+.+.|++++...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHH
Confidence 34444444443333222 245578888999999999999999999999988753 1122222333344567788888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003749 528 VFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGC 607 (798)
Q Consensus 528 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 607 (798)
+...+....- -....|..-+..+....+++.|+.+-++.+..+.. +...+..-...+...++.++|.-.|+.++....
T Consensus 288 L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap 365 (564)
T KOG1174|consen 288 LMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAP 365 (564)
T ss_pred HHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcch
Confidence 8887765421 23445555556666788899999999888876543 555565556778889999999999999887643
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhc-CChHHHHHHHHHHHHcCCCCCHHHHH
Q 003749 608 IPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIM-HGYASL-GDTGKAFEYFTKLRNEGLELDVFTYE 685 (798)
Q Consensus 608 ~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li-~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~ 685 (798)
-+..+|.-|+.+|...|++.+|.-+-+...+. +.-+..+...+. ..|... ..-++|.+++++.+...+. -.-..+
T Consensus 366 -~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~ 442 (564)
T KOG1174|consen 366 -YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVN 442 (564)
T ss_pred -hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHH
Confidence 27889999999999999999998877665443 234555665553 333322 2357899999888765432 244567
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003749 686 ALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVH 752 (798)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 752 (798)
.+...|...|+.++++.++++.... .+|....+.|++.+...+.+++|++.|..... +.|+..
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~ 505 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSK 505 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccch
Confidence 7788899999999999999998874 58999999999999999999999999998886 455543
No 99
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.7e-12 Score=126.08 Aligned_cols=83 Identities=22% Similarity=0.412 Sum_probs=77.1
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec-ceeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GRVLT 227 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~-g~~~~ 227 (798)
..++.||||.||.++.|++|.-+|.+.|+|-++++++| +.+|.+||||||.|.+.+.|+.||+.| |++.|. |+.|.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD-~~sG~nRGYAFVtf~~Ke~Aq~Aik~l--nn~Eir~GK~ig 157 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMD-PFSGDNRGYAFVTFCTKEEAQEAIKEL--NNYEIRPGKLLG 157 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeec-ccCCCCcceEEEEeecHHHHHHHHHHh--hCccccCCCEeE
Confidence 34569999999999999999999999999999999999 999999999999999999999999999 999986 99999
Q ss_pred eeccccc
Q 003749 228 VKLDDGR 234 (798)
Q Consensus 228 v~~~~~~ 234 (798)
|+.+-.+
T Consensus 158 vc~Svan 164 (506)
T KOG0117|consen 158 VCVSVAN 164 (506)
T ss_pred EEEeeec
Confidence 9877444
No 100
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=2.9e-12 Score=114.93 Aligned_cols=81 Identities=20% Similarity=0.463 Sum_probs=78.3
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
+.|.|.-||..+|+++++.+|+..|+|++|++++| +.+|+|-|||||.|-++++|.+|+..+ ||..+..+.|+|.++
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRD-KitGqSLGYGFVNYv~p~DAe~Aintl--NGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTL--NGLRLQNKTIKVSYA 118 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeec-cccccccccceeeecChHHHHHHHhhh--cceeeccceEEEEec
Confidence 48999999999999999999999999999999999 999999999999999999999999999 999999999999999
Q ss_pred cccc
Q 003749 232 DGRR 235 (798)
Q Consensus 232 ~~~~ 235 (798)
++..
T Consensus 119 RPSs 122 (360)
T KOG0145|consen 119 RPSS 122 (360)
T ss_pred cCCh
Confidence 8874
No 101
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=5.8e-08 Score=94.78 Aligned_cols=399 Identities=11% Similarity=0.031 Sum_probs=260.4
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR-DMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (798)
+...-..++.+|-..|+-+.|+..+.......-. .--|.|+..+-+.| +-.++.--+.+.+.. .+.- ...|
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~---p~inlMla~l~~~g~r~~~~vl~ykevvre-cp~a----L~~i 167 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRS---PRINLMLARLQHHGSRHKEAVLAYKEVIRE-CPMA----LQVI 167 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccc---hhHHHHHHHHHhccccccHHHHhhhHHHHh-cchH----HHHH
Confidence 3444566788898999999999888777665322 22344444444332 222333333333322 1111 1112
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--cCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcC
Q 003749 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ--TRNMERAEALVRDMEEEG-IDAPIDIYHMMMDGYTIIG 450 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g 450 (798)
.+..+.+ +..+...-..|-.....++..+....+.+++. .++-..|...+--+.... +..++.....+.+++...|
T Consensus 168 ~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~G 246 (564)
T KOG1174|consen 168 EALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNG 246 (564)
T ss_pred HHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhc
Confidence 2222111 11111111122222233344444445555443 444444555554444432 5667888999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003749 451 NEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFE 530 (798)
Q Consensus 451 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 530 (798)
+.++|+-.|++.+..+.. ++.......-.+.+.|++++...+...+.... ..+...|-.-+..+...+++..|+.+-+
T Consensus 247 dn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~e 324 (564)
T KOG1174|consen 247 DYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVE 324 (564)
T ss_pred CchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 999999999998875321 23334444555677888888888777776542 2344445555555667899999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003749 531 DVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPT 610 (798)
Q Consensus 531 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 610 (798)
+.++.... +...+-.-..++...|+.++|.-.|+..+...+ -+...|..|+.+|.-.|++.+|.-+-+...+. ...+
T Consensus 325 K~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~s 401 (564)
T KOG1174|consen 325 KCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNS 401 (564)
T ss_pred HHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcc
Confidence 98876443 455666667788999999999999999887653 36789999999999999999998887766554 2225
Q ss_pred HHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 611 VHTFNALI-LGLV-EKRQMEKAIEILDEMTLAGISPNE-HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEAL 687 (798)
Q Consensus 611 ~~~~~~li-~~~~-~~~~~~~A~~~~~~m~~~~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 687 (798)
..+.+.+. ..+. .-.--++|.+++++.... .|+. -..+.+...|...|..+.++.++++.+.. .+|....+.|
T Consensus 402 A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~L 477 (564)
T KOG1174|consen 402 ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHL 477 (564)
T ss_pred hhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHH
Confidence 55555442 2222 223347899999887764 4553 45667777888999999999999988764 5788999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCC
Q 003749 688 LKACCKSGRMQSALAVTKEMSAQK 711 (798)
Q Consensus 688 ~~~~~~~g~~~~A~~~~~~~~~~~ 711 (798)
.+.+...+.+++|+..|..+...+
T Consensus 478 gd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 478 GDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC
Confidence 999999999999999999998876
No 102
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.35 E-value=1.8e-11 Score=110.10 Aligned_cols=78 Identities=24% Similarity=0.506 Sum_probs=74.3
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.++.+||+|.|..+++++.|...|++|-.....++++| ++||+++|||||.|.+++++.+|++.| ||..++.|+|+.
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRd-kRTgKSkgygfVSf~~pad~~rAmrem--~gkyVgsrpikl 264 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRD-KRTGKSKGYGFVSFRDPADYVRAMREM--NGKYVGSRPIKL 264 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhcccccc-ccccccccceeeeecCHHHHHHHHHhh--cccccccchhHh
Confidence 56779999999999999999999999999999999999 999999999999999999999999999 999999999876
Q ss_pred e
Q 003749 229 K 229 (798)
Q Consensus 229 ~ 229 (798)
.
T Consensus 265 R 265 (290)
T KOG0226|consen 265 R 265 (290)
T ss_pred h
Confidence 4
No 103
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=4.1e-12 Score=96.70 Aligned_cols=78 Identities=22% Similarity=0.405 Sum_probs=69.9
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
+.-|||.|||+.+|.++..++|.+||.|..|+|--. ...+|-|||.|++..+|++|++.| +|..+.++.+.|-+
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~----k~TrGTAFVVYedi~dAk~A~dhl--sg~n~~~ryl~vly 91 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT----KETRGTAFVVYEDIFDAKKACDHL--SGYNVDNRYLVVLY 91 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCc----cCcCceEEEEehHhhhHHHHHHHh--cccccCCceEEEEe
Confidence 348999999999999999999999999999999655 344999999999999999999999 99999999999976
Q ss_pred cccc
Q 003749 231 DDGR 234 (798)
Q Consensus 231 ~~~~ 234 (798)
-.+.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 5433
No 104
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=9e-10 Score=108.51 Aligned_cols=200 Identities=17% Similarity=0.098 Sum_probs=128.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (798)
....+..+...|...|++++|++.++++++.. +.+...+..++..|...|++++|++.|++..+.... +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 34566777777888888888888888877653 335667777777788888888888888877765432 4556666777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHH
Q 003749 410 AQCQTRNMERAEALVRDMEEEGI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVS 488 (798)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 488 (798)
.+...|++++|.+.+++..+... ......+..+...+...|++++|...|++..+.... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 77777777777777777765421 122344555666666666666666666666654321 3445556666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 489 KALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVM 533 (798)
Q Consensus 489 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (798)
+|...++++... ...+...+..+...+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666666554 23344444455555555666666666555543
No 105
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.34 E-value=6e-09 Score=111.02 Aligned_cols=293 Identities=16% Similarity=0.136 Sum_probs=141.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---
Q 003749 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ--- 413 (798)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 413 (798)
....+...|++++|++.+++-.+. +......+...+..+.+.|+.++|..+|..++.+++. |..-|..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence 334556677777777777665543 3323455566677777777777777777777776432 33333344433311
Q ss_pred --cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 003749 414 --TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEE-KCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKA 490 (798)
Q Consensus 414 --~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 490 (798)
..+.+...++++++...- |.......+.-.+.....+. .+..++..+...|+. .+|+.|-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 123555566666665542 22222222221122211222 233444444555533 3455555555544444444
Q ss_pred HHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 003749 491 LEVSKVMKSS----G----------IKHNM--KTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGM 554 (798)
Q Consensus 491 ~~~~~~m~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 554 (798)
.+++...... + -.|+. +++..+...|...|++++|+.++++.+++.+. .+..|....+.|-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHC
Confidence 4444443321 0 01222 23333444555556666666666555554322 244555555555555
Q ss_pred CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--H----HH--HHHHHHHHhcCC
Q 003749 555 GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTV--H----TF--NALILGLVEKRQ 626 (798)
Q Consensus 555 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~----~~--~~li~~~~~~~~ 626 (798)
|++++|...++.....+.. |...-+-.+..+.++|++++|.+++....+.+..+.. . .| .....+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666555555555554433 3444444444555555555555555555443322111 1 11 222334555555
Q ss_pred HHHHHHHHHHHH
Q 003749 627 MEKAIEILDEMT 638 (798)
Q Consensus 627 ~~~A~~~~~~m~ 638 (798)
+..|++.|....
T Consensus 321 ~~~ALk~~~~v~ 332 (517)
T PF12569_consen 321 YGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 106
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=4.9e-10 Score=105.49 Aligned_cols=229 Identities=13% Similarity=0.126 Sum_probs=154.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 003749 475 GCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGM 554 (798)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 554 (798)
+.|..+|.+.|.+.+|...|+...+. .+-..||..|-..|.+..+-..|+.+|.+-++.-+ .|+.....+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHHHHH
Confidence 56777888888888888877777765 45667777777788888888888887777666422 2444444566677777
Q ss_pred CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003749 555 GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEIL 634 (798)
Q Consensus 555 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 634 (798)
++.++|.++|+.+.+.... ++....++...|.-.++.+.|+..|+++...|.. +...|+.+..+|.-.+++|-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7788888888777776533 5666666666777777778888888877777765 6777777777777777777777777
Q ss_pred HHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003749 635 DEMTLAGISPN--EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA 709 (798)
Q Consensus 635 ~~m~~~~~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (798)
.+....-..++ ...|-.|.......||+..|.+.|+..+..+.. +...++.|.-.-.+.|++++|..+++....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 77665432233 235556666666666666666666666655433 455666666556666666666666665554
No 107
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.33 E-value=3.4e-12 Score=142.05 Aligned_cols=78 Identities=19% Similarity=0.523 Sum_probs=74.9
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeeccc
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~~ 232 (798)
+|||||||.++||++|+++|++||.|.+|+|.+| +.|++++|||||+|.+.++|.+|++.+ |+..++|+.|+|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d-~~t~~s~G~afV~F~~~~~A~~Al~~l--n~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRD-SVTRRSLGYGYVNFQNPADAERALETM--NFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCeeEEeeccc
Confidence 7999999999999999999999999999999999 889999999999999999999999999 9999999999999875
Q ss_pred c
Q 003749 233 G 233 (798)
Q Consensus 233 ~ 233 (798)
.
T Consensus 79 ~ 79 (562)
T TIGR01628 79 R 79 (562)
T ss_pred c
Confidence 3
No 108
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=4.7e-08 Score=103.23 Aligned_cols=406 Identities=12% Similarity=0.026 Sum_probs=233.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHH
Q 003749 362 IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAP-IDIYH 440 (798)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~ 440 (798)
+..|...|..|.-++.+.|+++.+.+.|++...- .......|+.+...|...|.-..|..++++.......|+ ...+.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4456666777777777777777777777776543 222556677777777777777777777766554422232 23333
Q ss_pred HHHHHH-HhcCCHHHHHHHHHHHHHC--CC--CcCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHCCCCC
Q 003749 441 MMMDGY-TIIGNEEKCLIVFERLKEC--GF--SPSIISYGCLINLYTKIG-----------KVSKALEVSKVMKSSGIKH 504 (798)
Q Consensus 441 ~l~~~~-~~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~~~~~ 504 (798)
.....| .+.+..++++.+-.+.... +. ......|..+.-+|...- ...++++.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 333333 3445666666665555541 11 112334444444443321 123555666666654422
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 003749 505 NMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIH 584 (798)
Q Consensus 505 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 584 (798)
|..+.--+.--|+..++++.|....++..+.+..-+...|..|.-.+...+++.+|+.+.+.....-.. |-.....-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhhh
Confidence 222222233345566777777777777776655556677777777777777777777777665543211 1111111122
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC-CCCHHH-H-H-HHHHH----HHhcCCHHHHHHHHHH-----------------HHH
Q 003749 585 GFARAGEMKRALEIFDMMRRSGC-IPTVHT-F-N-ALILG----LVEKRQMEKAIEILDE-----------------MTL 639 (798)
Q Consensus 585 ~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~-~-~-~li~~----~~~~~~~~~A~~~~~~-----------------m~~ 639 (798)
.-...++.++++.....+...-- .+.+.. . + .+... .....+..+|.+.... +..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 22224444444444433322100 000000 0 0 00000 0000011111111111 110
Q ss_pred CCCC--CC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003749 640 AGIS--PN------EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (798)
Q Consensus 640 ~~~~--p~------~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (798)
..+. ++ ...|......+.+.+..++|...+.++.... ......|......+...|.+.+|.+.|......+
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 0011 11 2345566678888899999999998887764 3467788888888899999999999999998876
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHHcCCccccccc
Q 003749 712 IPRNTFVYNILIDGWARRGDVWEAAD--LMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSI 773 (798)
Q Consensus 712 ~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~ 773 (798)
+.+..+...+..++.+.|+..-|.. ++..|.+.+. -+...|-.|...+.+.|+.+.|.+-
T Consensus 715 -P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 715 -PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred -CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHH
Confidence 5567799999999999998888887 9999998642 3688999999999999999887654
No 109
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.32 E-value=2.9e-12 Score=130.51 Aligned_cols=83 Identities=28% Similarity=0.550 Sum_probs=79.3
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
+.+||||+|+++++++|..+|+..|.|.+++++.| +.||++|||||++|.+.+++.+|++.| ||..+.||+|+|.++
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D-~~tG~~~G~~f~~~~~~~~~~~a~~~l--Ng~~~~gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYD-RETGKPKGFGFCEFTDEETAERAIRNL--NGAEFNGRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeeccc-ccCCCcCceeeEecCchhhHHHHHHhc--CCcccCCceEEeecc
Confidence 69999999999999999999999999999999999 999999999999999999999999999 999999999999999
Q ss_pred cccchh
Q 003749 232 DGRRLK 237 (798)
Q Consensus 232 ~~~~~~ 237 (798)
..+...
T Consensus 96 ~~~~~~ 101 (435)
T KOG0108|consen 96 SNRKNA 101 (435)
T ss_pred cccchh
Confidence 766543
No 110
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=9.8e-09 Score=104.01 Aligned_cols=434 Identities=15% Similarity=0.120 Sum_probs=238.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 003749 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS-LVTYSIIVGGFAKMG 380 (798)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g 380 (798)
-.++.+..||++.|+.+|-+.+... ++|-+.|..-..+|+..|++++|++--.+-++. .|+ ...|+-+..++.-.|
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcc
Confidence 4567788999999999999999986 558888999999999999999999988888875 345 567999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH------HHHHcC---CCCChhhHHHHHHHHHhcC-
Q 003749 381 NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVR------DMEEEG---IDAPIDIYHMMMDGYTIIG- 450 (798)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------~m~~~~---~~~~~~~~~~l~~~~~~~g- 450 (798)
++++|+..|.+.++.+. .|...+..+..++.... . +.+.|. .+...- .......|..++..+-+.-
T Consensus 85 ~~~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~--~-~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDP-SNKQLKTGLAQAYLEDY--A-ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred cHHHHHHHHHHHhhcCC-chHHHHHhHHHhhhHHH--H-hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 99999999999998754 37777777877772110 0 111111 100000 0000111222221111100
Q ss_pred ------CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH-cCCHH----HHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh
Q 003749 451 ------NEEKCLIVFERLKECGFSPSIISYGCLINLYTK-IGKVS----KALEVSKVMKS-SGIKHNMKTYSMLINGFLK 518 (798)
Q Consensus 451 ------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~----~A~~~~~~m~~-~~~~~~~~~~~~ll~~~~~ 518 (798)
+..........+...+.. .+...-..... ..... ........+.+ .....-..-...+.++..+
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKGVDEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred hhhcccccHHHHHHHHHHhcCccc----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 000000000000000000 00000000000 00000 00000000000 0000011233456667777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcc-------cHHHHHHHHHhcCC
Q 003749 519 LKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSR-------TFMPIIHGFARAGE 591 (798)
Q Consensus 519 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~~~ 591 (798)
..+++.+++.+...++.. -+..-++....+|...|.+.+......+..+.|.. ... .+..+..+|.+.++
T Consensus 237 kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHh
Confidence 788888888888777764 25555666677777777777666666555554422 111 12223335666677
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003749 592 MKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTK 671 (798)
Q Consensus 592 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 671 (798)
++.++..|.+.......|+. +.+....+++++......-.+... ..-...-...+.+.|++..|+..|.+
T Consensus 314 ~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred HHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 78888877776543222221 222334444444444333222111 11122225566677777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 003749 672 LRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDV 751 (798)
Q Consensus 672 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 751 (798)
++..... |...|....-+|.+.|.+..|+.=.+...+.+ +.....|.--+.++....++++|++.|.+.++. .|+.
T Consensus 384 AIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~ 459 (539)
T KOG0548|consen 384 AIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSN 459 (539)
T ss_pred HHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cchh
Confidence 7777643 67777777777777777777777777776664 444455655566666666777777777777663 4554
Q ss_pred HHHHHHHHHHHH
Q 003749 752 HTYTSFINACSK 763 (798)
Q Consensus 752 ~~~~~l~~~~~~ 763 (798)
.-+..-+.-|..
T Consensus 460 ~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 460 AEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHH
Confidence 444333444433
No 111
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=1.5e-12 Score=122.39 Aligned_cols=77 Identities=27% Similarity=0.500 Sum_probs=74.2
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
-|++|||.+++++.|+.|+..|..||+|+++.+..| ..||++|||+||||+-++.|+-|++.| ||..++||.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWD-p~T~kHKgFAFVEYEvPEaAqLAlEqM--Ng~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQM--NGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccc-cccccccceEEEEEeCcHHHHHHHHHh--ccccccCccccccC
Confidence 468999999999999999999999999999999999 999999999999999999999999999 99999999999973
No 112
>smart00362 RRM_2 RNA recognition motif.
Probab=99.31 E-value=9.6e-12 Score=96.54 Aligned_cols=72 Identities=36% Similarity=0.684 Sum_probs=67.2
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+|||+|||.++++++|+++|++||.|.++++..+ + |+++|+|||+|.+.++|.+|+..+ ++..++|+.++|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~-~--~~~~~~~~v~f~~~~~a~~a~~~~--~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKD-T--GKSKGFAFVEFESEEDAEKAIEAL--NGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecC-C--CCCCceEEEEeCCHHHHHHHHHHh--CCcEECCEEEeeC
Confidence 5899999999999999999999999999999987 3 778999999999999999999998 9999999998874
No 113
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=1.6e-09 Score=113.66 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=56.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CcCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-
Q 003749 436 IDIYHMMMDGYTIIGNEEKCLIVFERLKEC-----GF-SPSIISY-GCLINLYTKIGKVSKALEVSKVMKSS-----GI- 502 (798)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~-----~~- 502 (798)
..+...|...|...|+++.|..++...++. |. .+.+.+. +.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555677777777777777777766553 11 2233322 33556677777777777777766532 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 503 -KHNMKTYSMLINGFLKLKDWANVFAVFEDVM 533 (798)
Q Consensus 503 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (798)
..-..+++.|..+|.+.|++++|...++...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERAL 310 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 1112355555566666677666666665544
No 114
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=8.2e-12 Score=124.37 Aligned_cols=88 Identities=28% Similarity=0.441 Sum_probs=79.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhc----ccCCeeeccee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV----EFDGVEFHGRV 225 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~----~~~~~~~~g~~ 225 (798)
...+|||.|||+++|+++|.++|++||+|.++.++.+ +.||.++|+|||.|.+...++.||.+. +..++.|+||.
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~-k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~ 369 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKD-KDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL 369 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEec-cCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence 3479999999999999999999999999999999999 999999999999999999999999876 33348899999
Q ss_pred eeeecccccchhh
Q 003749 226 LTVKLDDGRRLKN 238 (798)
Q Consensus 226 ~~v~~~~~~~~~~ 238 (798)
|+|..+-.|....
T Consensus 370 Lkv~~Av~RkeA~ 382 (678)
T KOG0127|consen 370 LKVTLAVTRKEAA 382 (678)
T ss_pred EeeeeccchHHHH
Confidence 9999997775443
No 115
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.29 E-value=1.8e-10 Score=122.20 Aligned_cols=280 Identities=17% Similarity=0.213 Sum_probs=167.8
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003749 458 VFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGL 537 (798)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 537 (798)
++-.+...|+.|+-+||..+|.-|+..|+.+.|- +|..|....+..+...++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3445556677777777777777777777777777 7777776666667777777777766666665554
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHH
Q 003749 538 KPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRS-GCIPTVHTFNA 616 (798)
Q Consensus 538 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~ 616 (798)
.|-..+|..|..+|...|++.. |+...+ -+..+...+...|.-.....++..+.-. +..||..+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n--- 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN--- 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---
Confidence 4566777777777777777655 222221 1222334445555544444444443211 22233322
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003749 617 LILGLVEKRQMEKAIEILDEMTLAG-ISPNEHTYTTIMHGYASL-GDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKS 694 (798)
Q Consensus 617 li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~t~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 694 (798)
++......|-++.+++++..+-... ..|..+ +++-+... ..+++-..+.+...+ .++..+|..++++-...
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAA 217 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhc
Confidence 2333444556666666665443221 011111 23222222 223333333333333 46777788888887788
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCcccccccc
Q 003749 695 GRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSIP 774 (798)
Q Consensus 695 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~~ 774 (798)
|+.+.|..++.+|.+.|++.....|..|+-+ .++..-+..+++.|.+.|+.|+..|+.-.+-.|..+|....+-+..
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~s 294 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGS 294 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccccc
Confidence 8888888888888888877777777766655 6777777777888888888888888777777777766655544443
No 116
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.28 E-value=5.7e-12 Score=134.04 Aligned_cols=78 Identities=28% Similarity=0.508 Sum_probs=72.2
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec-ceeeeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GRVLTVK 229 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~-g~~~~v~ 229 (798)
.++|||||||.+++|++|+++|++||.|.+++|++| .+|++||||||+|.+.++|.+|++.| |+..+. |+.|.|.
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D--~sG~sRGfaFV~F~~~e~A~~Ai~~l--ng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD--FSGQNRGYAFVTFCGKEEAKEAVKLL--NNYEIRPGRLLGVC 133 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC--CCCCccceEEEEeCCHHHHHHHHHHc--CCCeecCCcccccc
Confidence 369999999999999999999999999999999998 68999999999999999999999999 999985 8888887
Q ss_pred ccc
Q 003749 230 LDD 232 (798)
Q Consensus 230 ~~~ 232 (798)
.+.
T Consensus 134 ~S~ 136 (578)
T TIGR01648 134 ISV 136 (578)
T ss_pred ccc
Confidence 653
No 117
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=2.3e-11 Score=117.75 Aligned_cols=82 Identities=26% Similarity=0.436 Sum_probs=73.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCee-ec--ceee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE-FH--GRVL 226 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~-~~--g~~~ 226 (798)
+..++|||.+|..++|.||+++|++||.|.+|.|++| |.||.++|||||.|.+.++|.+|+.+| ++.. |- ..+|
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Al--hn~ktlpG~~~pv 109 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINAL--HNQKTLPGMHHPV 109 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHh--hcccccCCCCcce
Confidence 3458999999999999999999999999999999999 999999999999999999999999998 6544 43 5678
Q ss_pred eeeccccc
Q 003749 227 TVKLDDGR 234 (798)
Q Consensus 227 ~v~~~~~~ 234 (798)
.|++|+.-
T Consensus 110 qvk~Ad~E 117 (510)
T KOG0144|consen 110 QVKYADGE 117 (510)
T ss_pred eecccchh
Confidence 88888654
No 118
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=2.1e-09 Score=112.84 Aligned_cols=238 Identities=17% Similarity=0.178 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHC-----C--
Q 003749 506 MKTYSMLINGFLKLKDWANVFAVFEDVMRD-----GL-KPDVV-LYNNIIRAFCGMGNMDRAIHIVKEMQKE-----R-- 571 (798)
Q Consensus 506 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-- 571 (798)
..+...|...|...|+++.|+.+++..++. |. .+... ..+.+...|...+++++|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555667777777777777777665543 21 11222 2334666777888888888888777542 1
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 003749 572 HRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRS-----GCI-PT-VHTFNALILGLVEKRQMEKAIEILDEMTLA---G 641 (798)
Q Consensus 572 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~-p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~ 641 (798)
..--..++..|..+|.+.|++++|...++.+.+. +.. +. ...++.++..|...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1112345666677788888888888777766432 111 11 223456667788889999999988875432 1
Q ss_pred CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC--C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003749 642 ISP----NEHTYTTIMHGYASLGDTGKAFEYFTKLRNE----GL--E-LDVFTYEALLKACCKSGRMQSALAVTKEMSAQ 710 (798)
Q Consensus 642 ~~p----~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~----~~--~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (798)
... ...+++.|...|...|++++|.++|++++.. +- . -....++.|...|.+.+++++|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 112 2357899999999999999999999988754 11 1 12456788888999999999998888876532
Q ss_pred ----C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003749 711 ----K--IPRNTFVYNILIDGWARRGDVWEAADLMQQMK 743 (798)
Q Consensus 711 ----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (798)
| .+-...+|..|+.+|.+.|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 22234578999999999999999999888765
No 119
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.27 E-value=1e-11 Score=138.30 Aligned_cols=83 Identities=24% Similarity=0.434 Sum_probs=77.8
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
...++|||+||+.++++++|+++|++||.|.+++++.| .+|+++|||||+|.+.++|.+|+..| ||..++|++|.|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d--~~g~~~g~gfV~f~~~~~A~~A~~~~--~g~~~~gk~l~V 358 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD--EKGVSRGFGFVCFSNPEEANRAVTEM--HGRMLGGKPLYV 358 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC--CCCCcCCeEEEEeCCHHHHHHHHHHh--cCCeeCCceeEE
Confidence 34568999999999999999999999999999999997 67999999999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
.++..+.
T Consensus 359 ~~a~~k~ 365 (562)
T TIGR01628 359 ALAQRKE 365 (562)
T ss_pred EeccCcH
Confidence 9997664
No 120
>smart00360 RRM RNA recognition motif.
Probab=99.26 E-value=1.8e-11 Score=94.73 Aligned_cols=71 Identities=37% Similarity=0.667 Sum_probs=66.5
Q ss_pred ecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 156 VGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 156 v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
|+|||.++++++|+++|++||.|..+.+..+ +.+++++|||||+|.+.++|.+|+..+ ++..++|+.++|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~-~~~~~~~~~a~v~f~~~~~a~~a~~~~--~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRD-KDTGKSKGFAFVEFESEEDAEKALEAL--NGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeC-CCCCCCCceEEEEeCCHHHHHHHHHHc--CCCeeCCcEEEeC
Confidence 6899999999999999999999999999987 668999999999999999999999998 9999999998873
No 121
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.26 E-value=2.1e-11 Score=134.71 Aligned_cols=82 Identities=26% Similarity=0.467 Sum_probs=77.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
...+|||||||..+++++|+++|+.||.|..+.++++ ..+|+++|||||+|.+.++|..|+..| ||..|.|+.|.|+
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~-~~~g~~~g~afv~f~~~~~a~~A~~~l--~g~~~~~~~l~v~ 370 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKD-IATGLSKGYAFCEYKDPSVTDVAIAAL--NGKDTGDNKLHVQ 370 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEec-CCCCCcCeEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEE
Confidence 3468999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
++...
T Consensus 371 ~a~~~ 375 (509)
T TIGR01642 371 RACVG 375 (509)
T ss_pred ECccC
Confidence 98644
No 122
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.25 E-value=1.5e-11 Score=133.85 Aligned_cols=80 Identities=29% Similarity=0.529 Sum_probs=76.4
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++||||||+..+++++|+++|++||.|..|.++.+ ..+|+++|||||+|.+.++|.+|+..| ||..|.|+.|+|.+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d-~~~g~~~g~afV~f~~~e~A~~A~~~l--~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRD-PETGRSKGFGFIQFHDAEEAKEALEVM--NGFELAGRPIKVGY 262 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEc-CCCCccceEEEEEECCHHHHHHHHHhc--CCcEECCEEEEEEE
Confidence 468999999999999999999999999999999998 788999999999999999999999999 99999999999999
Q ss_pred ccc
Q 003749 231 DDG 233 (798)
Q Consensus 231 ~~~ 233 (798)
+..
T Consensus 263 a~~ 265 (457)
T TIGR01622 263 AQD 265 (457)
T ss_pred ccC
Confidence 863
No 123
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=1.7e-11 Score=110.00 Aligned_cols=80 Identities=29% Similarity=0.453 Sum_probs=75.9
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
-.|||-||.++++|.-|-++|+.||.|.+|+|++| ..|.+.||||||.+.+.++|..||..| ||+.+.+|.|.|.|.
T Consensus 279 ~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD-~ttnkCKGfgFVtMtNYdEAamAi~sL--NGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 279 WCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRD-FTTNKCKGFGFVTMTNYDEAAMAIASL--NGYRLGDRVLQVSFK 355 (360)
T ss_pred eEEEEEecCCCchHhHHHHHhCcccceeeEEEEec-CCcccccceeEEEecchHHHHHHHHHh--cCccccceEEEEEEe
Confidence 38999999999999999999999999999999999 889999999999999999999999999 999999999999886
Q ss_pred ccc
Q 003749 232 DGR 234 (798)
Q Consensus 232 ~~~ 234 (798)
..+
T Consensus 356 tnk 358 (360)
T KOG0145|consen 356 TNK 358 (360)
T ss_pred cCC
Confidence 544
No 124
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=4.1e-08 Score=103.54 Aligned_cols=413 Identities=15% Similarity=0.137 Sum_probs=230.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-C-------CCCCHHHHHHHHHHHH
Q 003749 306 YARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE-G-------IEMSLVTYSIIVGGFA 377 (798)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-g-------~~~~~~~~~~l~~~~~ 377 (798)
|...|+.+.|.+-.+-+. +..+|..|.++|.+..+++-|.-++.-|... | ...+..+-..+.....
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAi 811 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAI 811 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHH
Confidence 555677777766555544 3456777777777777777666666555321 0 1111133333444455
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 003749 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLI 457 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 457 (798)
..|.+++|+.+|++..+. ..|=..|-..|.+++|.++-+.--+.. -..+|......+...++.+.|++
T Consensus 812 eLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHH
Confidence 677777777777776543 233345666777777777654332211 13456666666666777777777
Q ss_pred HHHHHHH----------CC---------CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003749 458 VFERLKE----------CG---------FSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK 518 (798)
Q Consensus 458 ~~~~~~~----------~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 518 (798)
.|++... .. -..|...|.-....+-..|+.+.|+.+|...+. |-.+++..|-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEee
Confidence 7665321 00 012334444445555556666666666666543 3345555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHH-----
Q 003749 519 LKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMK----- 593 (798)
Q Consensus 519 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~----- 593 (798)
.|+.++|-++-++- -|...+..|.+.|...|++.+|...|.+... +...|..|..++.-+
T Consensus 951 qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nl 1015 (1416)
T KOG3617|consen 951 QGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANL 1015 (1416)
T ss_pred ccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHH
Confidence 67777776665542 2556666777778777888787777766542 233333322222111
Q ss_pred ----------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHC--CCCCCHHHHHHHH
Q 003749 594 ----------RALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILD--------EMTLA--GISPNEHTYTTIM 653 (798)
Q Consensus 594 ----------~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~--------~m~~~--~~~p~~~t~~~li 653 (798)
.|-+.|++. |. -+.-.+..|-+.|.+.+|+++-- +++.. .-..|....+...
T Consensus 1016 al~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rca 1087 (1416)
T KOG3617|consen 1016 ALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCA 1087 (1416)
T ss_pred HhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 112222211 10 01112234555566666555421 11222 2234556666666
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-CCCCCCH----HHHHHHHHHHHH
Q 003749 654 HGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA-QKIPRNT----FVYNILIDGWAR 728 (798)
Q Consensus 654 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~----~~~~~l~~~~~~ 728 (798)
+-++...++++|..++...++. ...+.. |+..++.--.++-+.|.- .+-.++. .+...+.+.|.+
T Consensus 1088 dFF~~~~qyekAV~lL~~ar~~---------~~Alql-C~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1088 DFFENNQQYEKAVNLLCLAREF---------SGALQL-CKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH---------HHHHHH-HhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence 7777777788888777766542 233333 333344444455555532 1112332 356778889999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCccccc---------cccccchhhhhhhhhh
Q 003749 729 RGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRF---------SIPMLTKFYLFSFIWF 787 (798)
Q Consensus 729 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~---------~~~~~~~~~~~~~~w~ 787 (798)
.|.+..|-+-|.+.-++ ..-..++.+.|+.++.. +|..+.-.|+.++=|+
T Consensus 1158 QG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq 1216 (1416)
T KOG3617|consen 1158 QGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQ 1216 (1416)
T ss_pred ccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccc
Confidence 99999998877765432 23567888999877654 4455555788888886
No 125
>smart00361 RRM_1 RNA recognition motif.
Probab=99.22 E-value=3.7e-11 Score=91.16 Aligned_cols=61 Identities=16% Similarity=0.292 Sum_probs=55.3
Q ss_pred hHHHHHHhc----ccCcceEEE-EecCCCCC--CCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 165 KHLVMEFFR----QFGPIKNVI-LIKGYNNF--EKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 165 ~~~l~~~f~----~~g~v~~~~-~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
+++|+++|+ +||.|.++. ++.+ +.+ |+++|||||+|.+.++|.+|+..| ||..+.||.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~-~~~~~~~~rG~~fV~f~~~~dA~~A~~~l--~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYID-NVGYENHKRGNVYITFERSEDAARAIVDL--NGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeC-CCCCCCCCcEEEEEEECCHHHHHHHHHHh--CCCEECCEEEEe
Confidence 678999998 999999995 7776 555 999999999999999999999999 999999999986
No 126
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.21 E-value=2.7e-11 Score=131.80 Aligned_cols=81 Identities=23% Similarity=0.401 Sum_probs=75.5
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
++.++|||+|||..+++++|+++|++||.|.+|+++.| +.+|+++|||||+|.+.++|.+|+. + +|..+.|++|.|
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d-~~~~~skg~afVeF~~~e~A~~Al~-l--~g~~~~g~~i~v 162 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKD-RNSRRSKGVAYVEFYDVESVIKALA-L--TGQMLLGRPIIV 162 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-h--CCCEECCeeeEE
Confidence 45669999999999999999999999999999999999 8899999999999999999999996 6 999999999999
Q ss_pred ecccc
Q 003749 229 KLDDG 233 (798)
Q Consensus 229 ~~~~~ 233 (798)
+.+..
T Consensus 163 ~~~~~ 167 (457)
T TIGR01622 163 QSSQA 167 (457)
T ss_pred eecch
Confidence 87644
No 127
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.20 E-value=3.1e-11 Score=130.37 Aligned_cols=78 Identities=17% Similarity=0.293 Sum_probs=71.4
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
+++|||||||+++++++|+++|++||.|.+|+++++ ||||||+|++.++|.+|+..+..|+..++|++|.|++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 468999999999999999999999999999999976 7999999999999999998754478999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
+..+.
T Consensus 75 s~~~~ 79 (481)
T TIGR01649 75 STSQE 79 (481)
T ss_pred cCCcc
Confidence 97654
No 128
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.20 E-value=8.5e-08 Score=103.66 Aligned_cols=335 Identities=10% Similarity=0.053 Sum_probs=190.9
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGI-EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (798)
+...+-.+...|++..+++.|..+.-..-+... ..-...|..+.-.|.+.++...|+.-|+...+... -|...|..++
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLG 603 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLG 603 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHH
Confidence 455677788899999999999988433333210 01122345566668888999999999999988653 3788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCChhhHHHHHHHHH
Q 003749 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG------IDAPIDIYHMMMDGYT 447 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~l~~~~~ 447 (798)
.+|.+.|++..|+++|.++...++. +...-.-.....|..|.+.+|+..+...+..- ..--..++..+...+.
T Consensus 604 eAY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~ 682 (1238)
T KOG1127|consen 604 EAYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSA 682 (1238)
T ss_pred HHHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 9999999999999999998876433 33333444556788899999999888776531 1111233444444444
Q ss_pred hcCCHHHHHHHHHHHHH-------CCCCcCHHHHHHHHHHHHHcCCHH------HHHHHHH-HHHHCC------------
Q 003749 448 IIGNEEKCLIVFERLKE-------CGFSPSIISYGCLINLYTKIGKVS------KALEVSK-VMKSSG------------ 501 (798)
Q Consensus 448 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~------~A~~~~~-~m~~~~------------ 501 (798)
..|-..+|..++++-++ .....|...|..+.++|.-.-..+ .-..+|. +....+
T Consensus 683 ~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~ 762 (1238)
T KOG1127|consen 683 ITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGY 762 (1238)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHH
Confidence 44544444444444332 221223344443333322111111 0011111 111111
Q ss_pred --------CCCCHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 003749 502 --------IKHNMKTYSMLINGFLK--------LKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVK 565 (798)
Q Consensus 502 --------~~~~~~~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 565 (798)
+..+..+|..|+..|.+ ..+...|+..+++.++..-. +..+|+.|.-+ ...|++.-|...|-
T Consensus 763 ~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfI 840 (1238)
T KOG1127|consen 763 ECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFI 840 (1238)
T ss_pred HHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhh
Confidence 11223445555544443 12334677777776664332 56677766554 55566766666665
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003749 566 EMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILD 635 (798)
Q Consensus 566 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 635 (798)
+-...... ...+|..+...+.+..+++.|...|.+.+...+. +...|--........|+.-++..+|.
T Consensus 841 ks~~sep~-~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfa 908 (1238)
T KOG1127|consen 841 KSRFSEPT-CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFA 908 (1238)
T ss_pred hhhhcccc-chhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55544333 5566666666677777777777777776665432 44444333333334444444444443
No 129
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.19 E-value=2.5e-08 Score=90.17 Aligned_cols=199 Identities=15% Similarity=0.041 Sum_probs=164.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (798)
...-|.-.|.+.|++..|..-+++.++.. +.+..+|..+...|.+.|..+.|.+.|++.+... +-+-.+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 35567778999999999999999999984 4466688999999999999999999999998864 336778899999999
Q ss_pred hcCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 003749 378 KMGNAEAADHWFEEAKERHA-TLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCL 456 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 456 (798)
..|++++|...|++....-. ..-..+|.++..+..+.|+++.|.+.|++.++.. +-.......+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999999887532 2345688889888899999999999999998875 334566778888889999999999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003749 457 IVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (798)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (798)
..+++....+. .+..+....|.+-...|+.+.+.++=.++...
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99998888765 68888888888888999988888877777654
No 130
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.4e-07 Score=95.91 Aligned_cols=424 Identities=14% Similarity=0.056 Sum_probs=250.1
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
++|+..|-.++..+|. |-..|+.-..+|+..|++++|++=-.+-++.. +.-...|+.+..++.-
T Consensus 19 ~~ai~~~t~ai~l~p~---------------nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 19 ETAIRLFTEAIMLSPT---------------NHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFG 82 (539)
T ss_pred HHHHHHHHHHHccCCC---------------ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHh
Confidence 9999999999999986 66678888899999999999998887777763 3345589999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH------HHHhc---CCCCChhhHHHHHHHHHhc
Q 003749 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFE------EAKER---HATLNAIIYGNIIYAQCQT 414 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------~~~~~---~~~~~~~~~~~l~~~~~~~ 414 (798)
.|++++|+..|.+-++.. +-|...++-+..++.. +.. +.+.|. .+... ........|..++..+-+.
T Consensus 83 lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~--~~~-~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~ 158 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLE--DYA-ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKN 158 (539)
T ss_pred cccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhH--HHH-hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcC
Confidence 999999999999998864 2356677777777611 111 111111 11000 0000111122222111100
Q ss_pred -------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CCHH----HHHHHHHHHHH-CCCCcCHHHHHHHHHHH
Q 003749 415 -------RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII-GNEE----KCLIVFERLKE-CGFSPSIISYGCLINLY 481 (798)
Q Consensus 415 -------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g~~~----~A~~~~~~~~~-~~~~~~~~~~~~li~~~ 481 (798)
.+........-.+...+.. ............ .... .......++.+ ....--..-...+.+..
T Consensus 159 p~~l~~~l~d~r~m~a~~~l~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 159 PTSLKLYLNDPRLMKADGQLKGVDEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred cHhhhcccccHHHHHHHHHHhcCccc----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 0001111111111000000 000000000000 0000 00000000000 00000112345677777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHcC
Q 003749 482 TKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYN-------NIIRAFCGM 554 (798)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-------~li~~~~~~ 554 (798)
.+..+++.|++.+....+.. .+...++....+|...|.+.+.+...++..+.|.. ...-|+ .+..+|.+.
T Consensus 235 ykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhH
Confidence 88888889999888888764 45666677778888888888888887777666543 122222 234466677
Q ss_pred CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003749 555 GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEIL 634 (798)
Q Consensus 555 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 634 (798)
++++.++..|.+.......| +...+....++++.......-.+... ..-...-...+.+.|++..|++.|
T Consensus 312 ~~~~~ai~~~~kaLte~Rt~---------~~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~Y 381 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRTP---------DLLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHY 381 (539)
T ss_pred HhHHHHHHHHHHHhhhhcCH---------HHHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHH
Confidence 88888999988866543332 22334445556665555444332221 111222255678889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 003749 635 DEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPR 714 (798)
Q Consensus 635 ~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 714 (798)
.+++... +-|...|.....+|.++|.+..|++-.+..++.... ....|..-..++....++++|.+.|++..+.+ +.
T Consensus 382 teAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~d-p~ 458 (539)
T KOG0548|consen 382 TEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELD-PS 458 (539)
T ss_pred HHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ch
Confidence 9988876 667788999998999999999999888888876432 44556556666777778899999999888876 33
Q ss_pred CHHHHHHHHHHHH
Q 003749 715 NTFVYNILIDGWA 727 (798)
Q Consensus 715 ~~~~~~~l~~~~~ 727 (798)
+......+.++..
T Consensus 459 ~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 459 NAEAIDGYRRCVE 471 (539)
T ss_pred hHHHHHHHHHHHH
Confidence 4444444444443
No 131
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=5.8e-11 Score=83.38 Aligned_cols=50 Identities=38% Similarity=0.680 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003749 714 RNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSK 763 (798)
Q Consensus 714 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~ 763 (798)
||..+||+||.+|++.|++++|.++|++|++.|+.||..||+.|+++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888999999999999999999999999988999999999999888874
No 132
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.19 E-value=3.7e-08 Score=99.64 Aligned_cols=218 Identities=14% Similarity=0.034 Sum_probs=150.6
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
|.++..|.+++...+.+- .-....|..+...|...|++++|+..|+++++.. +.+...|+.+...|..
T Consensus 43 e~~i~~~~~~l~~~~~~~-----------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~ 110 (296)
T PRK11189 43 EVILARLNQILASRDLTD-----------EERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQ 110 (296)
T ss_pred HHHHHHHHHHHccccCCc-----------HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 778888888886544210 0023457778888999999999999999999875 4567889999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 003749 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEAL 423 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 423 (798)
.|++++|+..|++.++.. +-+..+|..++.++...|++++|++.|++..+.+.. +. ........+...++.++|.+.
T Consensus 111 ~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKEN 187 (296)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHH
Confidence 999999999999998864 225778888999999999999999999999887433 22 122222334466789999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--C-cCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 424 VRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC---GF--S-PSIISYGCLINLYTKIGKVSKALEVSKVM 497 (798)
Q Consensus 424 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (798)
|.+..... .++...+ . ..+...|+...+ ..+..+.+. .. . .....|..+...+.+.|++++|+..|++.
T Consensus 188 l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 188 LKQRYEKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHhhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 97765432 2222222 2 223334554443 344444321 00 0 12356778888888888888888888888
Q ss_pred HHCC
Q 003749 498 KSSG 501 (798)
Q Consensus 498 ~~~~ 501 (798)
.+.+
T Consensus 263 l~~~ 266 (296)
T PRK11189 263 LANN 266 (296)
T ss_pred HHhC
Confidence 8764
No 133
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.8e-11 Score=112.83 Aligned_cols=83 Identities=18% Similarity=0.308 Sum_probs=79.1
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
++...|||..|++-+++++|+-+|+.||.|.+|.|++| +.||.+-.||||+|++.++..+|.-.| +++.|+.|+|+|
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD-~ktgdsLqyaFiEFen~escE~AyFKM--dNvLIDDrRIHV 313 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRD-RKTGDSLQYAFIEFENKESCEQAYFKM--DNVLIDDRRIHV 313 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEec-ccccchhheeeeeecchhhHHHHHhhh--cceeeccceEEe
Confidence 56779999999999999999999999999999999999 899999999999999999999999999 999999999999
Q ss_pred eccccc
Q 003749 229 KLDDGR 234 (798)
Q Consensus 229 ~~~~~~ 234 (798)
.|+.+-
T Consensus 314 DFSQSV 319 (479)
T KOG0415|consen 314 DFSQSV 319 (479)
T ss_pred ehhhhh
Confidence 998654
No 134
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.17 E-value=2.8e-11 Score=110.89 Aligned_cols=73 Identities=26% Similarity=0.561 Sum_probs=69.2
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
.++||||||..+++.+|+.+|++||.|.+|+|+++ ||||..++...+..||..| +|..|+|..|+|+-+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN---------YgFVHiEdktaaedairNL--hgYtLhg~nInVeaS 71 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN---------YGFVHIEDKTAAEDAIRNL--HGYTLHGVNINVEAS 71 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc---------cceEEeecccccHHHHhhc--ccceecceEEEEEec
Confidence 37999999999999999999999999999999964 9999999999999999988 999999999999999
Q ss_pred cccc
Q 003749 232 DGRR 235 (798)
Q Consensus 232 ~~~~ 235 (798)
+++.
T Consensus 72 ksKs 75 (346)
T KOG0109|consen 72 KSKS 75 (346)
T ss_pred cccC
Confidence 8883
No 135
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=5.2e-08 Score=90.94 Aligned_cols=196 Identities=14% Similarity=0.088 Sum_probs=137.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHH
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTY-SIIVGGFA 377 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~l~~~~~ 377 (798)
+.+.+..+.+..++++|++++..-.++. ..+....+.|..+|....++.+|-.+|+++-.. .|...-| ..-...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4556666677788999999998888873 337777888889999999999999999998774 3444333 34566777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 003749 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLI 457 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 457 (798)
+.+.+.+|+.+...|.... ..-..+...-..+....+++.-+..+++++...| +..+.+.......+.|+++.|++
T Consensus 90 ~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 8899999999988876431 0011111111223446778888888877776433 45566666666778899999999
Q ss_pred HHHHHHHC-CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003749 458 VFERLKEC-GFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIK 503 (798)
Q Consensus 458 ~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 503 (798)
-|+...+. |+. ....||..+ +..+.++++.|++...+++++|++
T Consensus 166 kFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 166 KFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 99888876 444 456676555 445678889999999988887754
No 136
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.16 E-value=1.1e-10 Score=84.43 Aligned_cols=56 Identities=29% Similarity=0.635 Sum_probs=50.7
Q ss_pred HHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 168 VMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 168 l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
|.++|++||.|+++.+..+ + +|+|||+|.+.++|.+|++.| ||..++|++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~-~-----~~~a~V~f~~~~~A~~a~~~l--~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKK-K-----RGFAFVEFASVEDAQKAIEQL--NGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETT-S-----TTEEEEEESSHHHHHHHHHHH--TTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeC-C-----CCEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEEEC
Confidence 6789999999999999876 1 599999999999999999999 999999999999875
No 137
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.16 E-value=7e-11 Score=125.86 Aligned_cols=75 Identities=23% Similarity=0.410 Sum_probs=69.6
Q ss_pred cccceeecCCCccCchHHHHHHhccc--CcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQF--GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
..++|||+||+.++++++|+++|++| |.|++|+++ ++||||+|++.++|.+|++.| |+..|+|+.|+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---------rgfAFVeF~s~e~A~kAi~~l--nG~~i~Gr~I~ 300 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---------RDYAFVHFEDREDAVKAMDEL--NGKELEGSEIE 300 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---------cCeEEEEeCCHHHHHHHHHHh--CCCEECCEEEE
Confidence 34689999999999999999999999 999999876 469999999999999999999 99999999999
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|.+++++.
T Consensus 301 V~~Akp~~ 308 (578)
T TIGR01648 301 VTLAKPVD 308 (578)
T ss_pred EEEccCCC
Confidence 99998764
No 138
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.15 E-value=2e-10 Score=89.61 Aligned_cols=74 Identities=32% Similarity=0.672 Sum_probs=67.6
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
+|||+|||.++++++|+++|+.||.|..+.+..+ +. ++++|+|||+|.+.++|..|+..+ ++..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~-~~-~~~~~~~~v~f~s~~~a~~a~~~~--~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRD-KD-TKSKGFAFVEFEDEEDAEKALEAL--NGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeC-CC-CCcceEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEeC
Confidence 5899999999999999999999999999999986 33 367899999999999999999998 99999999998864
No 139
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.15 E-value=2.2e-10 Score=123.81 Aligned_cols=78 Identities=17% Similarity=0.328 Sum_probs=71.6
Q ss_pred cccceeecCCCc-cCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 150 QEGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 150 ~~~~~~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
++++|||+||++ .+++++|+++|++||.|.+|+++++ .+|||||+|.+.++|..|+..| ||..|.|++|+|
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~------~~g~afV~f~~~~~A~~Ai~~l--ng~~l~g~~l~v 345 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN------KKETALIEMADPYQAQLALTHL--NGVKLFGKPLRV 345 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC------CCCEEEEEECCHHHHHHHHHHh--CCCEECCceEEE
Confidence 456999999998 6999999999999999999999986 2699999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
.+++...
T Consensus 346 ~~s~~~~ 352 (481)
T TIGR01649 346 CPSKQQN 352 (481)
T ss_pred EEccccc
Confidence 9986653
No 140
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.15 E-value=8.9e-11 Score=120.88 Aligned_cols=80 Identities=33% Similarity=0.645 Sum_probs=76.4
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++||||||+.++++++|+++|++||.|..+.+..| +.+|+++|||||+|.+.+++..|+..+ +|..|.|++|.|..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d-~~~~~~~g~~~v~f~~~~~~~~a~~~~--~~~~~~~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRD-RETGKSRGFAFVEFESEESAEKAIEEL--NGKELEGRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeec-cccCccCceEEEEecCHHHHHHHHHHc--CCCeECCceeEeec
Confidence 579999999999999999999999999999999999 789999999999999999999999999 99999999999999
Q ss_pred ccc
Q 003749 231 DDG 233 (798)
Q Consensus 231 ~~~ 233 (798)
+..
T Consensus 192 ~~~ 194 (306)
T COG0724 192 AQP 194 (306)
T ss_pred ccc
Confidence 653
No 141
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.14 E-value=3.3e-11 Score=110.46 Aligned_cols=78 Identities=24% Similarity=0.507 Sum_probs=73.0
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
..++++||||+.+.++..+|+..|.+||+|.+++|++| |+||.|+-.++|..|++.| |++.+.|++++|
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd---------y~fvh~d~~eda~~air~l--~~~~~~gk~m~v 144 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD---------YAFVHFDRAEDAVEAIRGL--DNTEFQGKRMHV 144 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc---------eeEEEEeeccchHHHHhcc--cccccccceeee
Confidence 35569999999999999999999999999999999965 9999999999999999999 999999999999
Q ss_pred ecccccchh
Q 003749 229 KLDDGRRLK 237 (798)
Q Consensus 229 ~~~~~~~~~ 237 (798)
+++.+|.+.
T Consensus 145 q~stsrlrt 153 (346)
T KOG0109|consen 145 QLSTSRLRT 153 (346)
T ss_pred eeecccccc
Confidence 999998654
No 142
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=3.7e-08 Score=99.64 Aligned_cols=150 Identities=11% Similarity=-0.084 Sum_probs=86.5
Q ss_pred CChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003749 310 GDMHRARQTFENMRARG-IEP--TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAAD 386 (798)
Q Consensus 310 g~~~~A~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 386 (798)
+..+.++..+.+++... ..+ ....|..+...|...|++++|+..|++.++.. +.+...|+.+...|...|++++|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34556666666666431 111 12346666666667777777777777776653 225666777777777777777777
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 387 HWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (798)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (798)
..|++..+.+.. +..+|..++.++...|++++|.+.|++..+.+ |+..........+...++.++|+..|.+..
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 777777665332 45566666666666777777777777666653 221111111222334556666666665543
No 143
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=7.2e-11 Score=115.03 Aligned_cols=82 Identities=22% Similarity=0.374 Sum_probs=74.7
Q ss_pred hhcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee
Q 003749 146 TEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (798)
Q Consensus 146 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~ 225 (798)
+...+...|||.||+.++|++.|+++|++||.|+.|+.++| ||||.|.+.++|.+|++.+ ||+.|+|..
T Consensus 254 d~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD---------YaFVHf~eR~davkAm~~~--ngkeldG~~ 322 (506)
T KOG0117|consen 254 DTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD---------YAFVHFAEREDAVKAMKET--NGKELDGSP 322 (506)
T ss_pred hhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc---------eeEEeecchHHHHHHHHHh--cCceecCce
Confidence 34455678999999999999999999999999999988876 9999999999999999999 999999999
Q ss_pred eeeecccccchhh
Q 003749 226 LTVKLDDGRRLKN 238 (798)
Q Consensus 226 ~~v~~~~~~~~~~ 238 (798)
|.|.+|++.-..+
T Consensus 323 iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 323 IEVTLAKPVDKKK 335 (506)
T ss_pred EEEEecCChhhhc
Confidence 9999999875443
No 144
>PF13041 PPR_2: PPR repeat family
Probab=99.14 E-value=1.3e-10 Score=81.52 Aligned_cols=50 Identities=36% Similarity=0.657 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (798)
Q Consensus 329 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (798)
||..+||++|++|++.|++++|+++|++|.+.|+.||..||++++++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 45666666666666666666666666666666666666666666666553
No 145
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.13 E-value=7.1e-10 Score=112.47 Aligned_cols=88 Identities=34% Similarity=0.374 Sum_probs=74.8
Q ss_pred cccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
.+...+|||+|||.++++++|+++|++||.|+...|... ...++..+||||+|++.+++..||.+ +...++|+++.
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr-~~~~~~~~fgFV~f~~~~~~~~~i~A---sp~~ig~~kl~ 360 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVR-SPGGKNPCFGFVEFENAAAVQNAIEA---SPLEIGGRKLN 360 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEe-ccCCCcCceEEEEEeecchhhhhhhc---CccccCCeeEE
Confidence 344556999999999999999999999999999888764 23455569999999999999999987 58999999999
Q ss_pred eecccccchhhH
Q 003749 228 VKLDDGRRLKNK 239 (798)
Q Consensus 228 v~~~~~~~~~~~ 239 (798)
|+..+++..+.+
T Consensus 361 Veek~~~~~g~~ 372 (419)
T KOG0116|consen 361 VEEKRPGFRGNG 372 (419)
T ss_pred EEeccccccccc
Confidence 999888765543
No 146
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.12 E-value=1.1e-05 Score=82.27 Aligned_cols=409 Identities=12% Similarity=0.111 Sum_probs=244.9
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
|..+|+.||+-+... .++++++.++++... +..+...|..-|..-....+++...++|.+.+..- .+...|...++
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 778899999887666 899999999999976 45567789999999999999999999999988753 46777777776
Q ss_pred HHHhc-CCHHH----HHHHHHHHHh-cCCCC-ChhhHHHHHHH---------HHhcCChHHHHHHHHHHHHcCCCCChhh
Q 003749 375 GFAKM-GNAEA----ADHWFEEAKE-RHATL-NAIIYGNIIYA---------QCQTRNMERAEALVRDMEEEGIDAPIDI 438 (798)
Q Consensus 375 ~~~~~-g~~~~----A~~~~~~~~~-~~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 438 (798)
--.+. |+... -...|+-... .|..+ ....|+..+.. |.++.+.+...+++.+++..-+..-...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 44332 33322 2334444443 33221 22234444332 3344566667777777775422211222
Q ss_pred HHHH------HHH-----H--HhcCCHHHHHHHHHHHHHC--CCCcCHHH---------------HHHHHHHHHHcCCH-
Q 003749 439 YHMM------MDG-----Y--TIIGNEEKCLIVFERLKEC--GFSPSIIS---------------YGCLINLYTKIGKV- 487 (798)
Q Consensus 439 ~~~l------~~~-----~--~~~g~~~~A~~~~~~~~~~--~~~~~~~~---------------~~~li~~~~~~g~~- 487 (798)
|+.. ++. + -+...+..|..+++++... |+..+..+ |..+|.-=...+--
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 3221 111 1 1233456677777776542 43322222 44444322221111
Q ss_pred -------HHHHHHHHHHH-HCCCCCCHHHHH-----HHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 488 -------SKALEVSKVMK-SSGIKHNMKTYS-----MLINGFLKLKD-------WANVFAVFEDVMRDGLKPDVVLYNNI 547 (798)
Q Consensus 488 -------~~A~~~~~~m~-~~~~~~~~~~~~-----~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~l 547 (798)
....-++++.. -.+..|+.+... ...+.+...|+ .+++..+++..+..-...+..+|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111222222 122233322111 11122333333 45566666665543222233444333
Q ss_pred HHHHHcC---CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh
Q 003749 548 IRAFCGM---GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIP-TVHTFNALILGLVE 623 (798)
Q Consensus 548 i~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 623 (798)
...-... ...+....+++++......--..+|..+++...+..-++.|..+|.++.+.+..+ ++.++++++.-||.
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs 414 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS 414 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc
Confidence 3221111 1255566677766655433345677788888888888999999999998887666 67788888876664
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChHHHH
Q 003749 624 KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELD--VFTYEALLKACCKSGRMQSAL 701 (798)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 701 (798)
++.+-|.++|+--..+- ..+..--...++-+...++-..+..+|++++..++.++ ..+|..+|.--..-|++..+.
T Consensus 415 -kD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 415 -KDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred -CChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 56788999998766541 23334445667778888998999999999988855544 578899998888899999988
Q ss_pred HHHHHHHh
Q 003749 702 AVTKEMSA 709 (798)
Q Consensus 702 ~~~~~~~~ 709 (798)
++-+++..
T Consensus 493 ~lekR~~~ 500 (656)
T KOG1914|consen 493 KLEKRRFT 500 (656)
T ss_pred HHHHHHHH
Confidence 88877754
No 147
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.11 E-value=6.9e-11 Score=100.75 Aligned_cols=83 Identities=24% Similarity=0.439 Sum_probs=75.9
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEE-EEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNV-ILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
+.++++|||||.++++|..|.+.|+.||.+... ++.+| ..||.++|||||.|++.+.+.+|+..| ||..+..|++.
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd-~~tg~~~~~g~i~~~sfeasd~ai~s~--ngq~l~nr~it 170 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRD-PDTGNPKGFGFINYASFEASDAAIGSM--NGQYLCNRPIT 170 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCccccc-ccCCCCCCCeEEechhHHHHHHHHHHh--ccchhcCCceE
Confidence 445799999999999999999999999998765 77787 889999999999999999999999999 99999999999
Q ss_pred eeccccc
Q 003749 228 VKLDDGR 234 (798)
Q Consensus 228 v~~~~~~ 234 (798)
|.++..+
T Consensus 171 v~ya~k~ 177 (203)
T KOG0131|consen 171 VSYAFKK 177 (203)
T ss_pred EEEEEec
Confidence 9988544
No 148
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=1.3e-07 Score=88.25 Aligned_cols=329 Identities=12% Similarity=0.093 Sum_probs=214.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH-HHHHHHH
Q 003749 334 YTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYG-NIIYAQC 412 (798)
Q Consensus 334 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 412 (798)
+++++.-+.+..+++.|++++..-.++. +.+....+.|..+|.+..++..|-+.|+.+....+. ..-|. .-...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~--~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE--LEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH--HHHHHHHHHHHHH
Confidence 5567777788899999999999988874 237778889999999999999999999999876333 22222 2456677
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 003749 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALE 492 (798)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 492 (798)
+.+.+..|+++...|.+.. .........-.......+++..+..+.+++...| +..+.+.......+.|+++.|.+
T Consensus 90 ~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 8999999999998887631 0001111111233346788888888888876432 44555666677789999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------CCHH---------------HH
Q 003749 493 VSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK-------------PDVV---------------LY 544 (798)
Q Consensus 493 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-------------~~~~---------------~~ 544 (798)
-|+...+-+.--....|+..+.. .+.++++.|+++..++++.|+. +|+. .+
T Consensus 166 kFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 99999875434456677766644 4678999999999999887643 1211 12
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 545 NNIIRAFCGMGNMDRAIHIVKEMQKER-HRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVE 623 (798)
Q Consensus 545 ~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 623 (798)
|.-...+.+.|+++.|.+.+-+|.-+. ...|.+|+..+.-. --.+++.+..+-+.-+.+.+.- -..||..++-.||+
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCK 322 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhh
Confidence 223334567788888888888886443 34466666554322 2234455555555555555443 45677778888899
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH-hcCChHHHHHHHHHHH
Q 003749 624 KRQMEKAIEILDEMTLAGI-SPNEHTYTTIMHGYA-SLGDTGKAFEYFTKLR 673 (798)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~-~p~~~t~~~li~~~~-~~g~~~~A~~~~~~~~ 673 (798)
+.-++.|..++.+-..... ..+...|+. ++++. -.-..++|++-++.+.
T Consensus 323 Neyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 323 NEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred hHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHH
Confidence 8888888888765322110 122333333 33332 2344566665555443
No 149
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.11 E-value=8.6e-06 Score=78.04 Aligned_cols=331 Identities=12% Similarity=0.078 Sum_probs=204.9
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHH-HHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVT-YSIIV 373 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~l~ 373 (798)
+..-...+.+.+...|++..|+.-|..+++.+ +.+-.++..-...|...|+-.-|+.-+.+.++. .||... ...-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 34445667888888899999999888888762 223334555567788888888888888888875 456432 33445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 003749 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEE 453 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (798)
..+.++|.++.|..-|+.++..... . |...+|.+-+....+ .......+..+...|+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s--~-------------~~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPS--N-------------GLVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQ 172 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCC--c-------------chhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchh
Confidence 5677888899888888888765332 1 111111111111111 112233455566788899
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 454 KCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVM 533 (798)
Q Consensus 454 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (798)
.|++....+++.. .-|...|..-..+|...|+...|+.-++...+.. ..+...+--+-..+...|+.+.++...++.+
T Consensus 173 ~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999998863 3477888888889999999999988887776653 3455666667777888899888888888887
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-
Q 003749 534 RDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVH- 612 (798)
Q Consensus 534 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~- 612 (798)
+. .||.-.+...-. .+.+..+.++.|. ...+.++|.++++-.+...+....-...
T Consensus 251 Kl--dpdHK~Cf~~YK------klkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir 306 (504)
T KOG0624|consen 251 KL--DPDHKLCFPFYK------KLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIR 306 (504)
T ss_pred cc--CcchhhHHHHHH------HHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCccccee
Confidence 75 334322211111 1112222222221 2234555666666665555543221112
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 613 --TFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG 676 (798)
Q Consensus 613 --~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~ 676 (798)
.+..+-.++...+++.+|+..-.+.++.. +.|..++..-..+|.-..+++.|+.-|+.+.+.+
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 22333445556677777777776666542 2335666666677777777777777777777654
No 150
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.10 E-value=4.9e-07 Score=95.32 Aligned_cols=200 Identities=12% Similarity=0.034 Sum_probs=133.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGI-EPTL-HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
..|..+...+...|+.+++...+....+... ..+. .........+...|++++|.+++++..+.. +.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 4456666777777888887777777665421 1121 223333445677899999999999988763 335545442 22
Q ss_pred HHH----hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 003749 375 GFA----KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG 450 (798)
Q Consensus 375 ~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 450 (798)
.+. ..+..+.+.+.++... ............+..++...|++++|++.+++..+.. +.+...+..+..+|...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 333 2455555555555411 1122233445566678889999999999999999875 445677888889999999
Q ss_pred CHHHHHHHHHHHHHCCC-CcC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003749 451 NEEKCLIVFERLKECGF-SPS--IISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (798)
Q Consensus 451 ~~~~A~~~~~~~~~~~~-~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (798)
++++|+.++++...... .++ ...|..+...+...|++++|+.+++++...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 99999999998877532 122 234567888899999999999999887643
No 151
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.09 E-value=1.8e-10 Score=100.86 Aligned_cols=81 Identities=20% Similarity=0.437 Sum_probs=75.0
Q ss_pred ccceeecCCCccCchHHHHHHhccc-CcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQF-GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~-g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..-+||+.+|.-+.+..+...|++| |.|..+++.++ +.||.|||||||+|++++-|.-|-+.| |++.|.|+.|.+.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRn-krTGNSKgYAFVEFEs~eVA~IaAETM--NNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRN-KRTGNSKGYAFVEFESEEVAKIAAETM--NNYLLMEHLLECH 125 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecc-cccCCcCceEEEEeccHHHHHHHHHHh--hhhhhhhheeeeE
Confidence 4579999999999999999999988 78888888898 999999999999999999999999999 9999999999998
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
+=.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87665
No 152
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.09 E-value=1.7e-10 Score=103.11 Aligned_cols=81 Identities=27% Similarity=0.522 Sum_probs=74.1
Q ss_pred ccccceeecCCCccCchHHHHH----HhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecce
Q 003749 149 RQEGKIFVGNLPNWIKKHLVME----FFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~----~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~ 224 (798)
+++.+|||.||+..+..++|++ +|++||.|.+|...+ |.+.||-|||.|.+.++|..|+++| +|..+-|+
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k----t~KmRGQA~VvFk~~~~As~A~r~l--~gfpFygK 80 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK----TPKMRGQAFVVFKETEAASAALRAL--QGFPFYGK 80 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC----CCCccCceEEEecChhHHHHHHHHh--cCCcccCc
Confidence 4455999999999999999988 999999999998864 5788999999999999999999999 99999999
Q ss_pred eeeeecccccc
Q 003749 225 VLTVKLDDGRR 235 (798)
Q Consensus 225 ~~~v~~~~~~~ 235 (798)
+++|++|+...
T Consensus 81 ~mriqyA~s~s 91 (221)
T KOG4206|consen 81 PMRIQYAKSDS 91 (221)
T ss_pred hhheecccCcc
Confidence 99999997764
No 153
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.08 E-value=2.4e-07 Score=96.58 Aligned_cols=406 Identities=15% Similarity=0.149 Sum_probs=227.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003749 301 LMVNYYARRGDMHRARQTFENMRAR-GIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (798)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (798)
..|.-.++...+.+-.++-++.... |-. ....|..-.....-..++.+|..+|-+ .. .-...|.+|...
T Consensus 501 aai~dvak~r~lhd~~eiadeas~~~ggd-gt~fykvra~lail~kkfk~ae~ifle--qn-------~te~aigmy~~l 570 (1636)
T KOG3616|consen 501 AAIGDVAKARFLHDILEIADEASIEIGGD-GTDFYKVRAMLAILEKKFKEAEMIFLE--QN-------ATEEAIGMYQEL 570 (1636)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhCCC-CchHHHHHHHHHHHHhhhhHHHHHHHh--cc-------cHHHHHHHHHHH
Confidence 3444455666666777777766543 211 122232222222233567777777622 11 123456777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 003749 380 GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459 (798)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (798)
.+|++|+.+-+.. |.+--...-.+.++++...|+-++|-++-.. .| . -...+..|.+.|....|.+.-
T Consensus 571 hkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~elk~s---dg-----d-~laaiqlyika~~p~~a~~~a 638 (1636)
T KOG3616|consen 571 HKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAELKES---DG-----D-GLAAIQLYIKAGKPAKAARAA 638 (1636)
T ss_pred HhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhhccc---cC-----c-cHHHHHHHHHcCCchHHHHhh
Confidence 8888887764432 2221122223344555556665555443210 01 1 123445566666555554432
Q ss_pred HHHHHCCCCcCHHHHHHHHH-------------HHHHcCCHHHHHHHHHHHHHC---------CCCCCHHHH-HHHHHHH
Q 003749 460 ERLKECGFSPSIISYGCLIN-------------LYTKIGKVSKALEVSKVMKSS---------GIKHNMKTY-SMLINGF 516 (798)
Q Consensus 460 ~~~~~~~~~~~~~~~~~li~-------------~~~~~g~~~~A~~~~~~m~~~---------~~~~~~~~~-~~ll~~~ 516 (798)
..=.+ +..|......+.. .|-+..++++|++.|++--.. .++..+++. ......+
T Consensus 639 ~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl 716 (1636)
T KOG3616|consen 639 LNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHL 716 (1636)
T ss_pred cCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHH
Confidence 21111 0112222222222 233333333333333221100 011111111 1223334
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 003749 517 LKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRAL 596 (798)
Q Consensus 517 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 596 (798)
...|+++.|+..|-+. ......+.+-.....+.+|+.+++.+..+.. -...|-.+.+.|...|+++.|.
T Consensus 717 ~~~~q~daainhfiea---------~~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae 785 (1636)
T KOG3616|consen 717 EQIGQLDAAINHFIEA---------NCLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAE 785 (1636)
T ss_pred HHHHhHHHHHHHHHHh---------hhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHH
Confidence 4455566555554332 1122344555667788899999888877643 3456777888899999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 597 EIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG 676 (798)
Q Consensus 597 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~ 676 (798)
++|-+. ..++-.|.+|.+.|+++.|.++-.+.. |.......|-+-..-+-+.|++.+|.++|-.+-
T Consensus 786 ~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~--- 851 (1636)
T KOG3616|consen 786 ELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG--- 851 (1636)
T ss_pred HHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc---
Confidence 988653 245667788999999999988876543 334556667777777788888888888775442
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003749 677 LELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTS 756 (798)
Q Consensus 677 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 756 (798)
.|+ ..|.+|-+.|..++.+++.++-.-. .-..|.-.+..-|-..|++++|..-|-+.. -|..
T Consensus 852 -~p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~ka 913 (1636)
T KOG3616|consen 852 -EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKA 913 (1636)
T ss_pred -Cch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHH
Confidence 233 3567888888888888887655421 122355667777888888888887766554 3566
Q ss_pred HHHHHHHcCCccccccc
Q 003749 757 FINACSKAGDMQVRFSI 773 (798)
Q Consensus 757 l~~~~~~~g~~~~a~~~ 773 (798)
-++.|...|.+++|.+|
T Consensus 914 avnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 914 AVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHHhhhhhhHHHHHHH
Confidence 77788888888888777
No 154
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=3.5e-07 Score=96.77 Aligned_cols=241 Identities=14% Similarity=0.154 Sum_probs=156.9
Q ss_pred CHHHHHHHHH--HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCC
Q 003749 330 TLHVYTNLIH--AYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH--------ATL 399 (798)
Q Consensus 330 ~~~~~~~ll~--~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~ 399 (798)
|..|-..+++ .|.-.|+.+.|.+-++.+. +..+|..|.+++.+..++|-|.-.+-.|.... ...
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 6677777874 5788899999999887765 45789999999999999998877776664321 111
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 003749 400 NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLIN 479 (798)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 479 (798)
+...-....-...+.|.+++|+.++++..+. ..|=..|...|.+++|+++-+.--...+ ..||.....
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAK 866 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHH
Confidence 1122223334456889999999999998874 3455778889999999988765333222 356777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC-------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003749 480 LYTKIGKVSKALEVSKVMKSSG-------------------IKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPD 540 (798)
Q Consensus 480 ~~~~~g~~~~A~~~~~~m~~~~-------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 540 (798)
.+-..++.+.|++.|++..... -..+...|.-....+-..|+.+.|+.+|.....
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------ 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------ 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence 7778888998888887643210 011223333333344445556666655554432
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 541 VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMR 603 (798)
Q Consensus 541 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 603 (798)
|..+++..|-.|+.++|-++-++-- |....-.|...|-..|++.+|..+|.++.
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4455666666677777766655432 44455556667777777777777776543
No 155
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.06 E-value=2.6e-10 Score=110.36 Aligned_cols=82 Identities=23% Similarity=0.378 Sum_probs=75.3
Q ss_pred cceeecCCCccCchHHHHHHhc-ccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFR-QFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~-~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
+.+||.|+|+++...+|+++|+ +-|+|+.|.+..| .+||+||||.|||+++|.+++|++.| |.+.+.||.|+|+.
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~l--nk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKL--NKYEVNGRELVVKE 120 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHh--hhccccCceEEEec
Confidence 3599999999999999999996 7899999999997 78999999999999999999999999 99999999999998
Q ss_pred ccccchh
Q 003749 231 DDGRRLK 237 (798)
Q Consensus 231 ~~~~~~~ 237 (798)
.....+.
T Consensus 121 d~d~q~~ 127 (608)
T KOG4212|consen 121 DHDEQRD 127 (608)
T ss_pred cCchhhh
Confidence 8664433
No 156
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.06 E-value=1.8e-07 Score=84.81 Aligned_cols=206 Identities=14% Similarity=0.050 Sum_probs=135.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 544 YNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVE 623 (798)
Q Consensus 544 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 623 (798)
..-|...|...|+...|..-+++.++.... +..+|..+...|.+.|+.+.|.+-|+++...... +..+.|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 344556667777777777777777766543 5566666777777777777777777777766544 56666666666777
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003749 624 KRQMEKAIEILDEMTLAGI-SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALA 702 (798)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 702 (798)
.|++++|...|++..+.-. .--..+|..+..+..+.|+.+.|.++|++.++.... ...+...+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 7777777777777665421 122356777776777777777777777777776543 34456666777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003749 703 VTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYT 755 (798)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 755 (798)
+++.....+ ..+..+....|..-.+.|+.+.+.+.=.++... -|...-+-
T Consensus 195 ~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q 244 (250)
T COG3063 195 YLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQ 244 (250)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence 777776655 367777777777777777777666665555542 34444333
No 157
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=6.6e-10 Score=107.83 Aligned_cols=90 Identities=21% Similarity=0.400 Sum_probs=84.2
Q ss_pred chhhhcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec
Q 003749 143 QEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH 222 (798)
Q Consensus 143 ~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~ 222 (798)
....+.+++..+||++||.+.-+.+|-..|..||.|++.++..| +.||-+|.|+||.|++..+|..||.+| ||..++
T Consensus 416 ~~q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfid-k~tnlskcfgfvSyen~~sa~~aI~am--ngfQig 492 (510)
T KOG0144|consen 416 NGQVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFID-KVTNLSKCFGFVSYENAQSAQNAISAM--NGFQIG 492 (510)
T ss_pred CccccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEe-cccCHhhhcCcccccchhhhHHHHHHh--cchhhc
Confidence 34567788889999999999999999999999999999999999 999999999999999999999999999 999999
Q ss_pred ceeeeeecccccc
Q 003749 223 GRVLTVKLDDGRR 235 (798)
Q Consensus 223 g~~~~v~~~~~~~ 235 (798)
+++++|.+.+.+.
T Consensus 493 ~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 493 SKRLKVQLKRDRN 505 (510)
T ss_pred cccceEEeeeccC
Confidence 9999999987663
No 158
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.06 E-value=6.4e-05 Score=81.57 Aligned_cols=217 Identities=12% Similarity=0.064 Sum_probs=150.1
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHH--HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNY--YARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAY 341 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 341 (798)
..|.....+++.+.|+. .|...+.+ ..+.|+.++|..+++.....+. .|..|...+-.+|
T Consensus 26 kkal~~~~kllkk~Pn~-----------------~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y 87 (932)
T KOG2053|consen 26 KKALAKLGKLLKKHPNA-----------------LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVY 87 (932)
T ss_pred HHHHHHHHHHHHHCCCc-----------------HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHH
Confidence 67777778888777752 23334444 4578999999999998887763 4888999999999
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-----
Q 003749 342 AVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN----- 416 (798)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 416 (798)
...+..++|..+|+..... .|+......+..+|.|.+.+.+-.++=-++-+. .+-+.+.+-+++..+.+...
T Consensus 88 ~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~ 164 (932)
T KOG2053|consen 88 RDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENEL 164 (932)
T ss_pred HHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCccc
Confidence 9999999999999999886 456888888899999998887644433333332 23355555566665543221
Q ss_pred -----hHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCcCHHHHHHHHHHHHHcCCHHH
Q 003749 417 -----MERAEALVRDMEEEG-IDAPIDIYHMMMDGYTIIGNEEKCLIVF-ERLKECGFSPSIISYGCLINLYTKIGKVSK 489 (798)
Q Consensus 417 -----~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 489 (798)
..-|.+.++.+.+.+ ..-+..-...........|++++|+.++ ....+.-..-+...-+.-++.+...+++.+
T Consensus 165 ~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~ 244 (932)
T KOG2053|consen 165 LDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQE 244 (932)
T ss_pred ccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHH
Confidence 234666667766654 2122222333345556788899999998 444443333455555677888999999999
Q ss_pred HHHHHHHHHHCC
Q 003749 490 ALEVSKVMKSSG 501 (798)
Q Consensus 490 A~~~~~~m~~~~ 501 (798)
..++..++...+
T Consensus 245 l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 245 LFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHhC
Confidence 999999888876
No 159
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.05 E-value=2.7e-05 Score=84.34 Aligned_cols=226 Identities=12% Similarity=0.131 Sum_probs=159.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003749 306 YARRGDMHRARQTFENMRARGIEPTLHVYTNLIHA--YAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE 383 (798)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 383 (798)
....+++..|+...+.+.++ .|+. .|..++++ +.+.|+.++|..+++.....+.. |..|...+-.+|.+.|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 34567889999999999987 3443 34455555 45789999999999988776655 8899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----------CHH
Q 003749 384 AADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG----------NEE 453 (798)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g----------~~~ 453 (798)
+|..+|+++.... |+......+..+|.+.+++.+-.++--+|.+. .+.+...+=++++.+.+.- -..
T Consensus 95 ~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 9999999998763 45777777888999999887766655555553 2333333333343333211 123
Q ss_pred HHHHHHHHHHHCC-CCcCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003749 454 KCLIVFERLKECG-FSPSIISYGCLINLYTKIGKVSKALEVS-KVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFED 531 (798)
Q Consensus 454 ~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 531 (798)
-|.+.++++.+.+ ---+..-.......+...|++++|.+++ ....+.-..-+...-+.-++.+...+++.+..++..+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4566667766654 2222333334456677889999999998 3444433344556666778889999999999999999
Q ss_pred HHHcCCC
Q 003749 532 VMRDGLK 538 (798)
Q Consensus 532 ~~~~g~~ 538 (798)
+...|..
T Consensus 252 Ll~k~~D 258 (932)
T KOG2053|consen 252 LLEKGND 258 (932)
T ss_pred HHHhCCc
Confidence 9887654
No 160
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.05 E-value=8.7e-07 Score=84.63 Aligned_cols=89 Identities=10% Similarity=0.081 Sum_probs=65.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH
Q 003749 622 VEKRQMEKAIEILDEMTLAGISPNEH---TYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQ 698 (798)
Q Consensus 622 ~~~~~~~~A~~~~~~m~~~~~~p~~~---t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 698 (798)
...++|-++++-.+...+....-... .+..+-.++...|++.+|+....++++.... |+.++.--..+|.-...++
T Consensus 280 ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD 358 (504)
T KOG0624|consen 280 IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYD 358 (504)
T ss_pred HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHH
Confidence 44566777777777666553221222 3344555667788899999999999886533 5888888888999999999
Q ss_pred HHHHHHHHHHhCC
Q 003749 699 SALAVTKEMSAQK 711 (798)
Q Consensus 699 ~A~~~~~~~~~~~ 711 (798)
+|+.-|+.+.+.+
T Consensus 359 ~AI~dye~A~e~n 371 (504)
T KOG0624|consen 359 DAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998876
No 161
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.05 E-value=1.5e-06 Score=91.72 Aligned_cols=199 Identities=8% Similarity=0.000 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003749 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGI-EMS-LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (798)
Q Consensus 332 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (798)
..|..+...+...|+.+++.+.+.+..+... ..+ ..........+...|++++|.+++++..+.... +...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hH
Confidence 3455566666667777777766666554321 112 222333445566788888888888888776432 4444432 22
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC
Q 003749 410 AQCQ----TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIG 485 (798)
Q Consensus 410 ~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 485 (798)
.+.. .+....+.+.+... .............+...+...|++++|...+++..+.... +...+..+..+|...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcC
Confidence 2222 34444444444431 1111222334445567777888888888888888776432 4566777777888888
Q ss_pred CHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 486 KVSKALEVSKVMKSSGIK-HNM--KTYSMLINGFLKLKDWANVFAVFEDVMR 534 (798)
Q Consensus 486 ~~~~A~~~~~~m~~~~~~-~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 534 (798)
++++|...+++....... ++. ..|..+...+...|++++|+.+|++...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888888888777764311 222 2344566777777888888888877654
No 162
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.04 E-value=2.1e-10 Score=115.35 Aligned_cols=80 Identities=30% Similarity=0.599 Sum_probs=74.9
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeeccc
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~~ 232 (798)
++|||||++++++++|+..|+.||.|+.|.+.+| ..||.+||||||+|.+.+.|++|+..| ||..|-||.|+|..-.
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d-~~tG~skgfGfi~f~~~~~ar~a~e~l--ngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKD-SETGRSKGFGFITFVNKEDARKALEQL--NGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccc-cccccccCcceEEEecHHHHHHHHHHh--ccceecCceEEEEEee
Confidence 3999999999999999999999999999999998 779999999999999999999999999 9999999999997765
Q ss_pred ccc
Q 003749 233 GRR 235 (798)
Q Consensus 233 ~~~ 235 (798)
.+.
T Consensus 357 ~r~ 359 (549)
T KOG0147|consen 357 ERV 359 (549)
T ss_pred eec
Confidence 553
No 163
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=2.7e-10 Score=113.78 Aligned_cols=83 Identities=28% Similarity=0.510 Sum_probs=78.2
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
.+|||++||+.++.+.|.++|+.+|+|+.+.++.+ +.++.+||||||.|.=.+++++|+... ++..|.||.|+|..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~-~gs~~~RGfgfVtFam~ED~qrA~~e~--~~~kf~Gr~l~v~~A 82 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTN-KGSSEKRGFGFVTFAMEEDVQRALAET--EQSKFEGRILNVDPA 82 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecC-CCcccccCccceeeehHhHHHHHHHHh--hcCcccceecccccc
Confidence 59999999999999999999999999999999998 888899999999999999999999988 999999999999999
Q ss_pred cccchh
Q 003749 232 DGRRLK 237 (798)
Q Consensus 232 ~~~~~~ 237 (798)
+.|.+-
T Consensus 83 ~~R~r~ 88 (678)
T KOG0127|consen 83 KKRARS 88 (678)
T ss_pred cccccc
Confidence 877533
No 164
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=4.7e-06 Score=90.41 Aligned_cols=341 Identities=11% Similarity=0.114 Sum_probs=197.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEG--IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (798)
|...-...++++...+-..+-+++++++.-.+ +.-+.-.-|.|+-...+. +...+.+..+++-.. ---.+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdny-------Da~~i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDI 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccC-------CchhH
Confidence 33344455555555555666666666555321 111222233333333332 233344444443221 11123
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH
Q 003749 408 IYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKV 487 (798)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 487 (798)
...+...+-+++|..+|++..- +....+.|+. ..++.+.|.+.-++.- ....|..+..+-.+.|..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 3445555666666666665422 2333333332 3445555555544432 345677777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 003749 488 SKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEM 567 (798)
Q Consensus 488 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 567 (798)
.+|++-|-+. .|...|.-+++...+.|.|++..+.+....+..-+|... +.||-+|++.+++.+.++++.
T Consensus 1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-- 1190 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-- 1190 (1666)
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc--
Confidence 7777766443 255667777777778888888777776666655444433 467777777777766555442
Q ss_pred HHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003749 568 QKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEH 647 (798)
Q Consensus 568 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 647 (798)
-|+......+.+-|...+.++.|.-+|.. +..|..|...+...|++..|.+.-++. .+..
T Consensus 1191 -----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~k 1250 (1666)
T KOG0985|consen 1191 -----GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTK 1250 (1666)
T ss_pred -----CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchh
Confidence 25666677777777777777777776653 345666777777777777777655443 3456
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003749 648 TYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWA 727 (798)
Q Consensus 648 t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 727 (798)
||-.+-.+|...+.+.-| +|...++.....-...|+.-|-..|-+++.+.+++...... ......|+-|.-.|.
T Consensus 1251 tWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYS 1324 (1666)
T ss_pred HHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHH
Confidence 777777777766654433 23333344455666777777878888887777777655432 234445666665555
Q ss_pred H
Q 003749 728 R 728 (798)
Q Consensus 728 ~ 728 (798)
+
T Consensus 1325 k 1325 (1666)
T KOG0985|consen 1325 K 1325 (1666)
T ss_pred h
Confidence 4
No 165
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=7.6e-10 Score=100.05 Aligned_cols=82 Identities=27% Similarity=0.468 Sum_probs=72.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec---ceee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH---GRVL 226 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~---g~~~ 226 (798)
++++||||-|...-.|+|++.+|..||.|.+|.+.+. ..|.+|||+||.|.+..+|+.||.+| +|..-. ...|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg--~dg~sKGCAFVKf~s~~eAqaAI~aL--HgSqTmpGASSSL 93 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG--PDGNSKGCAFVKFSSHAEAQAAINAL--HGSQTMPGASSSL 93 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC--CCCCCCCceEEEeccchHHHHHHHHh--cccccCCCCccce
Confidence 5569999999999999999999999999999999985 56999999999999999999999999 887643 4567
Q ss_pred eeecccccc
Q 003749 227 TVKLDDGRR 235 (798)
Q Consensus 227 ~v~~~~~~~ 235 (798)
.|++++..+
T Consensus 94 VVK~ADTdk 102 (371)
T KOG0146|consen 94 VVKFADTDK 102 (371)
T ss_pred EEEeccchH
Confidence 888875554
No 166
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=2.3e-05 Score=85.37 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=49.7
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCccc
Q 003749 690 ACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQV 769 (798)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~ 769 (798)
.|.+.++|....++.++ ...|---+...+.+++.+-|.+++....+.| ....|..++-.|...=+.|.
T Consensus 1513 lyk~n~rW~qSiel~Kk---------d~lyKDame~Aa~S~~~~lae~Ll~~F~e~g---~~ecFaa~Ly~cYdLlrpd~ 1580 (1666)
T KOG0985|consen 1513 LYKGNNRWKQSIELCKK---------DKLYKDAMETAAESRDTELAEELLQYFLEEG---KRECFAACLYTCYDLLRPDV 1580 (1666)
T ss_pred HHhccchHHHHHHHhhh---------hhHHHHHHHHHHhcCChHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhcChHH
Confidence 34455667766666532 2234444555677888888999999988876 45678888888888777777
Q ss_pred cccc
Q 003749 770 RFSI 773 (798)
Q Consensus 770 a~~~ 773 (798)
+.++
T Consensus 1581 vlEl 1584 (1666)
T KOG0985|consen 1581 VLEL 1584 (1666)
T ss_pred HHHH
Confidence 7766
No 167
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.99 E-value=5.7e-06 Score=99.10 Aligned_cols=373 Identities=9% Similarity=-0.019 Sum_probs=215.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 003749 371 IIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG 450 (798)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 450 (798)
.....+...|++.+|...+..+... ..-..........+...|+++.+.+.+..+.......+..........+...|
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 3344455666666666544433211 00011112223344556777777776665522111112222344455666788
Q ss_pred CHHHHHHHHHHHHHCCC------CcC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHh
Q 003749 451 NEEKCLIVFERLKECGF------SPS--IISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM----KTYSMLINGFLK 518 (798)
Q Consensus 451 ~~~~A~~~~~~~~~~~~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~ 518 (798)
+++++..++......-- .+. ......+...+...|++++|...++.........+. ...+.+...+..
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~ 503 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC 503 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 88888888887754310 011 112223345567788999999988887663111121 234555666777
Q ss_pred cCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC----CCC--C-CcccHHHHHHHH
Q 003749 519 LKDWANVFAVFEDVMRDGL-----KPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKE----RHR--P-TSRTFMPIIHGF 586 (798)
Q Consensus 519 ~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~ 586 (798)
.|++++|...+++...... .....++..+...+...|++++|...+++.... +.. + ....+..+...+
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 8999999888887764311 111234456667788889999998888776542 111 0 112233445566
Q ss_pred HhcCCHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHH
Q 003749 587 ARAGEMKRALEIFDMMRRSG--CIP--TVHTFNALILGLVEKRQMEKAIEILDEMTLAGIS-PNEHTY-----TTIMHGY 656 (798)
Q Consensus 587 ~~~~~~~~a~~~~~~~~~~~--~~p--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~t~-----~~li~~~ 656 (798)
...|++++|...+.+..... ..+ ....+..+...+...|++++|...++++...... .....+ ...+..+
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYW 663 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHH
Confidence 77799999988888765431 111 2333444555677889999998888877542100 011111 1122344
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHH
Q 003749 657 ASLGDTGKAFEYFTKLRNEGLELD---VFTYEALLKACCKSGRMQSALAVTKEMSAQ----KIPR-NTFVYNILIDGWAR 728 (798)
Q Consensus 657 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~ 728 (798)
...|+.+.|..++........... ...+..+..++...|+.++|..+++++... +... ...++..+..++.+
T Consensus 664 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~ 743 (903)
T PRK04841 664 QMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ 743 (903)
T ss_pred HHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 557888888888776554221111 112345677788889999999888887653 2111 22356677788889
Q ss_pred cCCHHHHHHHHHHHHHc
Q 003749 729 RGDVWEAADLMQQMKQE 745 (798)
Q Consensus 729 ~g~~~~A~~~~~~m~~~ 745 (798)
.|+.++|...+.+..+.
T Consensus 744 ~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 744 QGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999888875
No 168
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.98 E-value=3.4e-10 Score=110.27 Aligned_cols=86 Identities=26% Similarity=0.525 Sum_probs=78.7
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.+++|||+|+++++++.|++.|++||+|.++.+++| +.+|+++||+||+|++++...+++.. ..+.|+||.|.++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d-~~t~rsrgFgfv~f~~~~~v~~vl~~---~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRD-PSTGRSRGFGFVTFATPEGVDAVLNA---RTHKLDGRSVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEecc-CCCCCcccccceecCCCcchheeecc---cccccCCccccce
Confidence 5679999999999999999999999999999999999 99999999999999999999988865 4788999999999
Q ss_pred cccccchhhH
Q 003749 230 LDDGRRLKNK 239 (798)
Q Consensus 230 ~~~~~~~~~~ 239 (798)
.+.++....+
T Consensus 81 ~av~r~~~~~ 90 (311)
T KOG4205|consen 81 RAVSREDQTK 90 (311)
T ss_pred eccCcccccc
Confidence 9988875543
No 169
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.98 E-value=2.4e-06 Score=102.36 Aligned_cols=371 Identities=9% Similarity=-0.002 Sum_probs=202.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 300 GLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTN----LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
.....+|...|++.+|...+..+ + +...... ....+...|++..+..+++.+.......+..........
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a---~---d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~ 418 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAA---G---DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWL 418 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHC---C---CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHH
Confidence 34445556666666555433322 1 2121111 223344556777666666554221111122233444555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC------C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhhHHHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHAT------L--NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAP----IDIYHMMM 443 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~l~ 443 (798)
+...|++++|..+++.+...-.. + .......+...+...|++++|...+++..+.-...+ ...++.+.
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg 498 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG 498 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 56778888888888776542110 0 111222234455678888888888887765311111 12345566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHH
Q 003749 444 DGYTIIGNEEKCLIVFERLKEC----GF-SPSIISYGCLINLYTKIGKVSKALEVSKVMKSS----GIK--H-NMKTYSM 511 (798)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~ 511 (798)
..+...|++++|...+.+.... |. .....++..+...+...|++++|...+.+.... +.. + ....+..
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 6677788888888888777643 11 111234455666777888888888877766542 211 1 1223444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-cccHH-----H
Q 003749 512 LINGFLKLKDWANVFAVFEDVMRD----GLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPT-SRTFM-----P 581 (798)
Q Consensus 512 ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~-----~ 581 (798)
+...+...|++++|...+.+.... +.......+..+...+...|+.++|...+........... ...+. .
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 555666678888888877776542 1111223444456667778888888887777654211101 01110 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHH
Q 003749 582 IIHGFARAGEMKRALEIFDMMRRSGCIPT---VHTFNALILGLVEKRQMEKAIEILDEMTLA----GISP-NEHTYTTIM 653 (798)
Q Consensus 582 li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~t~~~li 653 (798)
.+..+...|+.+.|...+........... ...+..+..++...|++++|..++++.... +... ...++..+.
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 12334456777887777665443211111 111334555677778888888887776542 2111 123555666
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC
Q 003749 654 HGYASLGDTGKAFEYFTKLRNEG 676 (798)
Q Consensus 654 ~~~~~~g~~~~A~~~~~~~~~~~ 676 (798)
.++...|+.++|...+.++.+..
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 77778888888888888887654
No 170
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=1.2e-07 Score=97.09 Aligned_cols=219 Identities=15% Similarity=0.128 Sum_probs=121.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (798)
+.+.|++.+|.-+|+...+.++. +...|..|..+....++-..|+..+++..+.. +.+..+...|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 34445555555555555544333 44555555555555555555555555555543 23444455555555555555555
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHH-----------HHHHHcCCHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003749 456 LIVFERLKECGFSPSIISYGCLI-----------NLYTKIGKVSKALEVSKVM-KSSGIKHNMKTYSMLINGFLKLKDWA 523 (798)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~li-----------~~~~~~g~~~~A~~~~~~m-~~~~~~~~~~~~~~ll~~~~~~~~~~ 523 (798)
+..+++++...++ |..+. ........+.+..++|-.+ ...+...|..+...|.-.|.-.|+|+
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 5555555432110 00000 0011111222333344333 33333456666677777777777788
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 524 NVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMR 603 (798)
Q Consensus 524 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 603 (798)
+|...|+..+...+. |..+||.|...++...+.++|+..|.+.++..+. -++++..|.-.|...|.+++|.+.|-.++
T Consensus 448 raiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 888877777765444 6677888887777777788888888777776543 23444445666777777777777765554
No 171
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.95 E-value=6e-05 Score=77.01 Aligned_cols=412 Identities=12% Similarity=0.099 Sum_probs=233.4
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 003749 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (798)
Q Consensus 328 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (798)
+-|..+|+.||.-+... .++++.+.++++... ++-....|..-|..-.+..+++.+..+|.+.+.. ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 66899999999988766 999999999999986 5557889999999999999999999999999876 3466777665
Q ss_pred HHHHHh-cCChH----HHHHHHHHHHH-cCCCC-ChhhHHHHHHH---------HHhcCCHHHHHHHHHHHHHCCCC---
Q 003749 408 IYAQCQ-TRNME----RAEALVRDMEE-EGIDA-PIDIYHMMMDG---------YTIIGNEEKCLIVFERLKECGFS--- 468 (798)
Q Consensus 408 ~~~~~~-~g~~~----~A~~~~~~m~~-~~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~~~~~--- 468 (798)
+..--+ .++.. ...+.|+-..+ .|+++ +-.+|+..+.. |..+.+++..+++|++++..-+.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 543332 22222 23333443333 34322 22345544432 34455777888889888754221
Q ss_pred ---cCHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHH--CCCCCCHH---------------HHHHHHHHHHhcCC
Q 003749 469 ---PSIISYGCLINLYT-------KIGKVSKALEVSKVMKS--SGIKHNMK---------------TYSMLINGFLKLKD 521 (798)
Q Consensus 469 ---~~~~~~~~li~~~~-------~~g~~~~A~~~~~~m~~--~~~~~~~~---------------~~~~ll~~~~~~~~ 521 (798)
-|-..|..-|+... +...+..|.++++++.. .|+..+.. .|..+|.--..++-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 12223332232221 12345667777766643 23322221 13333322111110
Q ss_pred ------H--HHHHHHHHHHHH-cCCCCCHHHH-----HHHHHHHHcCCC-------hHHHHHHHHHHHHCCCCCCcccHH
Q 003749 522 ------W--ANVFAVFEDVMR-DGLKPDVVLY-----NNIIRAFCGMGN-------MDRAIHIVKEMQKERHRPTSRTFM 580 (798)
Q Consensus 522 ------~--~~a~~~~~~~~~-~g~~~~~~~~-----~~li~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~ 580 (798)
. ....-++++.+. .+..|+.... ...-+.+...|+ .+++..+++..+..-..-+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011111222111 1222221110 001112222333 345555555544332221222222
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 003749 581 PIIHGFA---RAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISP-NEHTYTTIMHGY 656 (798)
Q Consensus 581 ~li~~~~---~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~t~~~li~~~ 656 (798)
.+.+.-- .....+.....++++...-..--..+|..++..-.+..-++.|..+|.+..+.+..+ ++..+++++..|
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 2221111 111245555566665543222234456667777777777888888888888776555 566677777666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHH
Q 003749 657 ASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRN--TFVYNILIDGWARRGDVWE 734 (798)
Q Consensus 657 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 734 (798)
| .+|.+-|.++|+--+..- .-+...-...++-+...++-..+..+|++....++.++ ..+|+.+++-=..-|++..
T Consensus 413 c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred h-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 5 466788888887665542 22333445666777788888888888888887754444 4588888888788888888
Q ss_pred HHHHHHHHHHc
Q 003749 735 AADLMQQMKQE 745 (798)
Q Consensus 735 A~~~~~~m~~~ 745 (798)
++++-+++...
T Consensus 491 i~~lekR~~~a 501 (656)
T KOG1914|consen 491 ILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHh
Confidence 88887777653
No 172
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.95 E-value=1.4e-06 Score=91.15 Aligned_cols=419 Identities=18% Similarity=0.193 Sum_probs=194.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHH--------------------cCCCC
Q 003749 306 YARRGDMHRARQTFENMRARGIEPTLH-VYTNLIHAYAVGRDMEEALSCVRKMKE--------------------EGIEM 364 (798)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~--------------------~g~~~ 364 (798)
....|+++.|...++.+.. .|+.. .|-.+.......|++--|.++|..+-+ .|-.
T Consensus 454 aid~~df~ra~afles~~~---~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggd- 529 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLESLEM---GPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGD- 529 (1636)
T ss_pred ccccCchHHHHHHHHhhcc---CccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCC-
Confidence 3466888888888876543 34443 466666555555555555444433211 1111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 003749 365 SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMD 444 (798)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 444 (798)
....|..-.....-..++++|..+|-+-- .....|-.|....++++|+.+-+- .|.+.-...-.+.+.
T Consensus 530 gt~fykvra~lail~kkfk~ae~ifleqn---------~te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q 597 (1636)
T KOG3616|consen 530 GTDFYKVRAMLAILEKKFKEAEMIFLEQN---------ATEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQ 597 (1636)
T ss_pred CchHHHHHHHHHHHHhhhhHHHHHHHhcc---------cHHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHH
Confidence 11122222222222234555555443210 112234455555666666555432 222222222334445
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003749 445 GYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWAN 524 (798)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 524 (798)
++...|+-++|-++- +. ...-...|+.|.+.|..-.|.+....=.. +..|......+..++.+..-++.
T Consensus 598 ~l~dt~qd~ka~elk----~s-----dgd~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydk 666 (1636)
T KOG3616|consen 598 ALMDTGQDEKAAELK----ES-----DGDGLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDK 666 (1636)
T ss_pred HHHhcCchhhhhhhc----cc-----cCccHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHh
Confidence 555566655554331 11 11122457778888887777664322111 12344444445555555544555
Q ss_pred HHHHHHHHHHc-------------C---------CCCCHHHH-HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHH
Q 003749 525 VFAVFEDVMRD-------------G---------LKPDVVLY-NNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMP 581 (798)
Q Consensus 525 a~~~~~~~~~~-------------g---------~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 581 (798)
|-.+|+++..- | +.-.+++. .....-+...|+++.|+..|-+. .....
T Consensus 667 agdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea---------~~~~k 737 (1636)
T KOG3616|consen 667 AGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA---------NCLIK 737 (1636)
T ss_pred hhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh---------hhHHH
Confidence 55555544320 0 00000000 00011112222233332222211 11112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003749 582 IIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGD 661 (798)
Q Consensus 582 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 661 (798)
.+.+..+.+.|.+|+.+++.+..... ...-|..+...|...|+++.|.++|-+.- .++-.|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 23334445555555555555443321 12234444455555556655555554321 13334455555666
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003749 662 TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQ 741 (798)
Q Consensus 662 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (798)
++.|.++-.+.. |.+.....|.+-..-+-+.|++.+|.+++-.+.. |+ .-|..|-+.|..++.+++.++
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHH
Confidence 655555544332 2233344444444445555555555555532221 22 234455666666666666554
Q ss_pred HHHcCCCCC--HHHHHHHHHHHHHcCCccccccc-------cccchhhhhhhhhh
Q 003749 742 MKQEGVQPD--VHTYTSFINACSKAGDMQVRFSI-------PMLTKFYLFSFIWF 787 (798)
Q Consensus 742 m~~~g~~pd--~~~~~~l~~~~~~~g~~~~a~~~-------~~~~~~~~~~~~w~ 787 (798)
- .+| ..|..++..-|...|+++.|.+- .+-...|-+|-.|.
T Consensus 876 ~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~ 925 (1636)
T KOG3616|consen 876 H-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWE 925 (1636)
T ss_pred h-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHH
Confidence 3 233 35778889999999998877654 33445788888884
No 173
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=1.6e-09 Score=102.54 Aligned_cols=74 Identities=20% Similarity=0.429 Sum_probs=69.2
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
.+||||+|...++|.+|+++|.+||+|+.+++... +|||||+|.+.++|..|.... .|...|+|++|+|.|.
T Consensus 229 ~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-------~~CAFv~ftTR~aAE~Aae~~-~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-------KGCAFVTFTTREAAEKAAEKS-FNKLVINGFRLKIKWG 300 (377)
T ss_pred eEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-------cccceeeehhhHHHHHHHHhh-cceeeecceEEEEEeC
Confidence 49999999999999999999999999999999986 789999999999999999885 4688899999999999
Q ss_pred cc
Q 003749 232 DG 233 (798)
Q Consensus 232 ~~ 233 (798)
++
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 88
No 174
>PLN02789 farnesyltranstransferase
Probab=98.93 E-value=1.1e-06 Score=88.62 Aligned_cols=138 Identities=12% Similarity=0.025 Sum_probs=67.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003749 304 NYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR-DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (798)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (798)
..+...++.++|+.+++.+++.. +-+..+|+....++.+.| ++++++..++++++.+. -+..+|+.....+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCch
Confidence 33444555566666666666552 223334554444554544 35556666555555432 2444455444444444442
Q ss_pred --HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 003749 383 --EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDG 445 (798)
Q Consensus 383 --~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 445 (798)
++++.+++++++.+.. |..+|.....++...|+++++++.++++++.+ ..+..+|+.....
T Consensus 123 ~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~v 185 (320)
T PLN02789 123 AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFV 185 (320)
T ss_pred hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHH
Confidence 4455555555554333 45555555555555555555555555555543 2234444444433
No 175
>PLN02789 farnesyltranstransferase
Probab=98.93 E-value=1.1e-06 Score=88.67 Aligned_cols=148 Identities=9% Similarity=0.031 Sum_probs=82.3
Q ss_pred hhhHHHHHHHHHHhcCCccHHHHHHHHHhhcC---CCHhhHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003749 262 EREWHRREFRKAVETQPENWQAVVSAFERIKK---PSRREFGLMVNYYARRG-DMHRARQTFENMRARGIEPTLHVYTNL 337 (798)
Q Consensus 262 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l 337 (798)
++.+|...|+.++..+.. ...++..+...-. -+...|+....++...| ++++++..++++.+.+ ..+..+|+..
T Consensus 35 ~~~~a~~~~ra~l~~~e~-serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R 112 (320)
T PLN02789 35 EFREAMDYFRAVYASDER-SPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHR 112 (320)
T ss_pred HHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHH
Confidence 346666666666655443 2333444333221 12334444444455555 4567777777766654 3344456655
Q ss_pred HHHHHccCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003749 338 IHAYAVGRDM--EEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ 413 (798)
Q Consensus 338 l~~~~~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 413 (798)
..++.+.|+. ++++.+++++++.+. -|..+|+...-++.+.|+++++++.++++++.+.. |..+|+....++.+
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~ 188 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITR 188 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHh
Confidence 5555555542 556666666666542 26666776666666667777777777777666544 55555555444443
No 176
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=1.9e-07 Score=95.78 Aligned_cols=224 Identities=10% Similarity=0.006 Sum_probs=167.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 003749 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN 416 (798)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 416 (798)
....+.+.|++.+|.-+|+..++.+. -+...|..|....+..++-..|+..+++..+.+.. |..+..+|.-.|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhh
Confidence 33456678888888888888888753 37888888888888888888888888888887654 77888888888888888
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHH-----------HHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHHc
Q 003749 417 MERAEALVRDMEEEGIDAPIDIYHMMM-----------DGYTIIGNEEKCLIVFERLKEC-GFSPSIISYGCLINLYTKI 484 (798)
Q Consensus 417 ~~~A~~~~~~m~~~~~~~~~~~~~~l~-----------~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~ 484 (798)
-.+|++.|++.+....+ |..+. ..+.....+.+..++|.++... +...|..++..|.-.|--.
T Consensus 369 q~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred HHHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 88888888888765311 00000 1122223344555666666443 4446777888888889999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 003749 485 GKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIV 564 (798)
Q Consensus 485 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 564 (798)
|++++|++.|+.++... +-|...||.|...++...+.++|+..|.+.++..+. -+.++..|.-.|...|.+++|.+.|
T Consensus 444 ~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred hHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHH
Confidence 99999999999998864 336678999999999999999999999999886433 2345667888899999999999888
Q ss_pred HHHHH
Q 003749 565 KEMQK 569 (798)
Q Consensus 565 ~~~~~ 569 (798)
-..+.
T Consensus 522 L~AL~ 526 (579)
T KOG1125|consen 522 LEALS 526 (579)
T ss_pred HHHHH
Confidence 76554
No 177
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.90 E-value=9e-07 Score=99.28 Aligned_cols=202 Identities=10% Similarity=0.070 Sum_probs=121.5
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEP-----TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYS 370 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 370 (798)
...|...|....+.++.++|++++++++.. +.+ -...|.++++.-...|.-+...++|+++.+. ---...|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 345666666677777777777777777653 111 1225666666666666666667777776663 11234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHh
Q 003749 371 IIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA--PIDIYHMMMDGYTI 448 (798)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~l~~~~~~ 448 (798)
.|...|.+.+++++|.++|+.|.++-- -...+|...+..+.++.+-+.|.+++.+..+.- +. .+......+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhh
Confidence 677777777777777777777766522 355666666666666666666666666665531 11 23344444555556
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003749 449 IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIK 503 (798)
Q Consensus 449 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 503 (798)
.|+.+.++.+|+.++....+ -...|+.+|++-.++|+.+.+.++|++++..++.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 66666666666666654322 3455666666666666666666666666665544
No 178
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=1e-08 Score=107.00 Aligned_cols=8 Identities=13% Similarity=0.256 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 003749 317 QTFENMRA 324 (798)
Q Consensus 317 ~~~~~~~~ 324 (798)
.+++.+++
T Consensus 733 ~~iqnLik 740 (1102)
T KOG1924|consen 733 SMIQNLIK 740 (1102)
T ss_pred HHHHHHHH
Confidence 33444443
No 179
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.89 E-value=8.1e-09 Score=114.24 Aligned_cols=72 Identities=22% Similarity=0.452 Sum_probs=60.2
Q ss_pred cccceeecCCCccCchHHHHHHhccc------------CcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccC
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQF------------GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD 217 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~------------g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 217 (798)
+.++|||||||+++|+++|+++|++| +.|..+.+.. .+|||||+|.+.++|..|+ .| |
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~-------~kg~afVeF~~~e~A~~Al-~l--~ 243 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK-------EKNFAFLEFRTVEEATFAM-AL--D 243 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC-------CCCEEEEEeCCHHHHhhhh-cC--C
Confidence 34599999999999999999999975 2344444443 4899999999999999999 47 9
Q ss_pred Ceeecceeeeeecc
Q 003749 218 GVEFHGRVLTVKLD 231 (798)
Q Consensus 218 ~~~~~g~~~~v~~~ 231 (798)
|..|.|+.|+|...
T Consensus 244 g~~~~g~~l~v~r~ 257 (509)
T TIGR01642 244 SIIYSNVFLKIRRP 257 (509)
T ss_pred CeEeeCceeEecCc
Confidence 99999999998643
No 180
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=2.6e-09 Score=101.05 Aligned_cols=82 Identities=20% Similarity=0.363 Sum_probs=75.7
Q ss_pred hcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 147 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
+.+.-.+|||..+.++.+|+||+..|..||+|..|.+.++ ..++.+|||||+||.+..+...|+..| |-+.++|+-|
T Consensus 206 eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~-pt~~~HkGyGfiEy~n~qs~~eAiasM--NlFDLGGQyL 282 (544)
T KOG0124|consen 206 EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARA-PTGRGHKGYGFIEYNNLQSQSEAIASM--NLFDLGGQYL 282 (544)
T ss_pred HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeecc-CCCCCccceeeEEeccccchHHHhhhc--chhhcccceE
Confidence 4455569999999999999999999999999999999999 888899999999999999999999999 9999999999
Q ss_pred eeecc
Q 003749 227 TVKLD 231 (798)
Q Consensus 227 ~v~~~ 231 (798)
+|.-+
T Consensus 283 RVGk~ 287 (544)
T KOG0124|consen 283 RVGKC 287 (544)
T ss_pred ecccc
Confidence 98544
No 181
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=3.5e-09 Score=107.84 Aligned_cols=80 Identities=21% Similarity=0.444 Sum_probs=72.5
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+...+||.||+++++..+|.++|+.||.|.+|++.+| .+| ++|| ||+|+++++|.+|+..+ ||..+.|++|.|.
T Consensus 75 d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~--~~g-~kg~-FV~f~~e~~a~~ai~~~--ng~ll~~kki~vg 148 (369)
T KOG0123|consen 75 DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATD--ENG-SKGY-FVQFESEESAKKAIEKL--NGMLLNGKKIYVG 148 (369)
T ss_pred CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEc--CCC-ceee-EEEeCCHHHHHHHHHHh--cCcccCCCeeEEe
Confidence 3334999999999999999999999999999999997 345 8999 99999999999999999 9999999999998
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
....+.
T Consensus 149 ~~~~~~ 154 (369)
T KOG0123|consen 149 LFERKE 154 (369)
T ss_pred eccchh
Confidence 776554
No 182
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.85 E-value=1.7e-08 Score=89.14 Aligned_cols=84 Identities=24% Similarity=0.399 Sum_probs=69.7
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec---ceeeee
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH---GRVLTV 228 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~---g~~~~v 228 (798)
++|||.+||.++...+|..+|..|-..+...+....+...-.+-+|||+|.+..+|.+|+.+| ||+.|+ +..|++
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaL--NGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNAL--NGVRFDPETGSTLHI 112 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHh--cCeeeccccCceeEe
Confidence 499999999999999999999999888877664321211112469999999999999999999 999998 889999
Q ss_pred ecccccchh
Q 003749 229 KLDDGRRLK 237 (798)
Q Consensus 229 ~~~~~~~~~ 237 (798)
++++++...
T Consensus 113 ElAKSNtK~ 121 (284)
T KOG1457|consen 113 ELAKSNTKR 121 (284)
T ss_pred eehhcCccc
Confidence 999887544
No 183
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.82 E-value=1.3e-08 Score=102.10 Aligned_cols=87 Identities=15% Similarity=0.299 Sum_probs=76.6
Q ss_pred cccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
..-.+++||.+|+..+.-.+|+.+|++||.|...+|+.+ -.+--.+.||||++.+.+.|.++|..| +.+.|+||.|.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTN-aRsPGaRCYGfVTMSts~eAtkCI~hL--HrTELHGrmIS 478 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTN-ARSPGARCYGFVTMSTSAEATKCIEHL--HRTELHGRMIS 478 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeec-CCCCCcceeEEEEecchHHHHHHHHHh--hhhhhcceeee
Confidence 345669999999999999999999999999999999987 444556889999999999999999999 99999999999
Q ss_pred eecccccchh
Q 003749 228 VKLDDGRRLK 237 (798)
Q Consensus 228 v~~~~~~~~~ 237 (798)
|+-++.-..+
T Consensus 479 VEkaKNEp~G 488 (940)
T KOG4661|consen 479 VEKAKNEPGG 488 (940)
T ss_pred eeecccCccc
Confidence 9988755433
No 184
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.77 E-value=1.3e-07 Score=94.10 Aligned_cols=49 Identities=16% Similarity=0.105 Sum_probs=21.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 445 GYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKS 499 (798)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (798)
++...|++++|++++.+. .+.......+.+|.+.++.+.|.+.++.|.+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334445555554444321 1333344444455555555555555555543
No 185
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.77 E-value=2.9e-07 Score=91.64 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHH
Q 003749 592 MKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDT-GKAFEYFT 670 (798)
Q Consensus 592 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~-~~A~~~~~ 670 (798)
+.+|..+|+++.+. ..++..+.|.+..++...|++++|.+++.+..+.+ .-+..++..++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44444444443322 22234444444444444444444444444443322 22333344444444444443 33334444
Q ss_pred HHHH
Q 003749 671 KLRN 674 (798)
Q Consensus 671 ~~~~ 674 (798)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 4433
No 186
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=2.5e-08 Score=103.81 Aligned_cols=80 Identities=28% Similarity=0.459 Sum_probs=69.9
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCC--CCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNN--FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.++|||.||+++++.++++.+|++.|.|.++.|..-++. --.|.|||||+|.+.++|++|++.| +|+.|+|+.|.|
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~l--qgtvldGH~l~l 592 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKAL--QGTVLDGHKLEL 592 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHh--cCceecCceEEE
Confidence 334999999999999999999999999999988763111 1124599999999999999999999 999999999999
Q ss_pred eccc
Q 003749 229 KLDD 232 (798)
Q Consensus 229 ~~~~ 232 (798)
+++.
T Consensus 593 k~S~ 596 (725)
T KOG0110|consen 593 KISE 596 (725)
T ss_pred Eecc
Confidence 9987
No 187
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.73 E-value=7.5e-06 Score=92.22 Aligned_cols=235 Identities=11% Similarity=0.029 Sum_probs=146.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 003749 365 SLVTYSIIVGGFAKMGNAEAADHWFEEAKER-HA---TLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYH 440 (798)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 440 (798)
+...|-..|..+...++.++|++++++++.. ++ .--...|.++++.....|.-+...++|+++.+.. ....+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4556777777777777777777777776653 11 1123356666666666666666777777776642 1245566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhc
Q 003749 441 MMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIK-HNMKTYSMLINGFLKL 519 (798)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~ 519 (798)
.|...|.+.+++++|.++|+.|.+. +.-...+|...++.+.+.++-+.|..++.++.+.-.+ -......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 7777777777777777777777664 2335567777777777777777777777777664211 1233344445555667
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCc--ccHHHHHHHHHhcCCHHHHHH
Q 003749 520 KDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS--RTFMPIIHGFARAGEMKRALE 597 (798)
Q Consensus 520 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~ 597 (798)
|+-+.+..+|+..+...++ -...|+..+++-.+.|+.+.+..+|++++..+..+.. ..|...+..-.+.|+-+.++.
T Consensus 1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 7777777777777766444 4567777777777777777777777777776644322 344444544445566555444
Q ss_pred HHHHHH
Q 003749 598 IFDMMR 603 (798)
Q Consensus 598 ~~~~~~ 603 (798)
+=.++.
T Consensus 1693 VKarA~ 1698 (1710)
T KOG1070|consen 1693 VKARAK 1698 (1710)
T ss_pred HHHHHH
Confidence 444433
No 188
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=1.1e-05 Score=85.25 Aligned_cols=217 Identities=12% Similarity=0.156 Sum_probs=168.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003749 438 IYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFL 517 (798)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 517 (798)
.-..+...+...|-...|+.+|+++. .|.-.|.+|...|+..+|..+..+-.+. +++...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 34566788889999999999998764 4667788899999999998888887773 678888888888887
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 003749 518 KLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALE 597 (798)
Q Consensus 518 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 597 (798)
...-+++|+++++..... .-..+.......++++++.+.|+.-.+.+.- -..+|-.+..+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHH
Confidence 777788888888775332 2223333334578889999888887766532 56778778888888999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 598 IFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE 675 (798)
Q Consensus 598 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~ 675 (798)
.|......... +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|++.+.++.+.
T Consensus 541 aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 541 AFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 99888775433 57789999999999999999999999988876 555667777777788899999999998888754
No 189
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.73 E-value=1.5e-08 Score=105.96 Aligned_cols=79 Identities=20% Similarity=0.436 Sum_probs=73.5
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
.+++||||.|+..+++.||.++|+.||+|.+|.++.. +|||||.+....+|.+|+.+| +.+.+.++.|+|.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-------R~cAfI~M~~RqdA~kalqkl--~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-------RGCAFIKMVRRQDAEKALQKL--SNVKVADKTIKIA 490 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-------CceeEEEEeehhHHHHHHHHH--hcccccceeeEEe
Confidence 3569999999999999999999999999999999876 899999999999999999999 9999999999999
Q ss_pred cccccchh
Q 003749 230 LDDGRRLK 237 (798)
Q Consensus 230 ~~~~~~~~ 237 (798)
|+.++...
T Consensus 491 Wa~g~G~k 498 (894)
T KOG0132|consen 491 WAVGKGPK 498 (894)
T ss_pred eeccCCcc
Confidence 99776533
No 190
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=2.7e-06 Score=89.72 Aligned_cols=214 Identities=11% Similarity=0.117 Sum_probs=150.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003749 300 GLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (798)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (798)
..+...+...|-..+|+.+|+++. .|--+|.+|...|+..+|..+..+.+++ ++|...|..+++.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 345566777788888888888764 4456777888888888888877777764 56777777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 003749 380 GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459 (798)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (798)
.-+++|.++++....+ +-..+.....+.+++.++.+.|+.-.+.+ +....+|..+..++.+.+++..|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 7777777777765332 23333333445778888888887777654 445677777777778888888888888
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 460 ERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMR 534 (798)
Q Consensus 460 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 534 (798)
..-...... +...||.+-.+|.+.++-.+|...+++..+.+ .-+-..|..-+....+.|.+++|++.+.++..
T Consensus 543 ~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 543 HRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 777664322 46678888888888888888888888877765 34555666666666777888888877777654
No 191
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.70 E-value=7.6e-06 Score=91.79 Aligned_cols=150 Identities=9% Similarity=0.076 Sum_probs=103.8
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC----------
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM---------- 364 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~---------- 364 (798)
+...+..|+..|...|++++|+++.+...+.. +.....|..+...+.+.++++++..+ .+... +..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~~ 105 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEHI 105 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHHHH
Confidence 55678889999999999999999999887762 22333444444466677776666555 33322 111
Q ss_pred ---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003749 365 ---------SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAP 435 (798)
Q Consensus 365 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 435 (798)
+...+..++.+|-+.|+.++|..+|+++++.+. -|..+.+.+...|... ++++|++++.+.+..
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----- 178 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----- 178 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----
Confidence 225677778888888888888888888888763 3778888888888887 888888888777654
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003749 436 IDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465 (798)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (798)
|....++..+.++|.++...
T Consensus 179 ----------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 179 ----------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred ----------HHhhhcchHHHHHHHHHHhc
Confidence 44444555556666655553
No 192
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.66 E-value=1.6e-08 Score=105.28 Aligned_cols=82 Identities=32% Similarity=0.444 Sum_probs=75.9
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.+.|.|.|||+..+-.+++++|..||.|++|+|..- ...+.++|||||+|-++..|.+|+++| ..+.+-||.|.++|
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK-~~k~a~rGF~Fv~f~t~~ea~nA~~al--~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK-IGKGAHRGFGFVDFLTPREAKNAFDAL--GSTHLYGRRLVLEW 689 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchh-hcchhhccceeeeccCcHHHHHHHHhh--cccceechhhheeh
Confidence 469999999999999999999999999999999975 567778999999999999999999999 89999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
++...
T Consensus 690 A~~d~ 694 (725)
T KOG0110|consen 690 AKSDN 694 (725)
T ss_pred hccch
Confidence 97664
No 193
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.63 E-value=3.6e-08 Score=95.91 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=69.9
Q ss_pred hcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 147 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
..+..|+|||.|||.+.|...|++-|..||.|..+.|.. .|+++| .|-|.+++.|.+|+..| ||..++||.|
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime----~GkskG--VVrF~s~edAEra~a~M--ngs~l~Gr~I 603 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME----NGKSKG--VVRFFSPEDAERACALM--NGSRLDGRNI 603 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc----cCCccc--eEEecCHHHHHHHHHHh--ccCcccCcee
Confidence 346778999999999999999999999999999999953 488887 89999999999999999 9999999999
Q ss_pred eeecc
Q 003749 227 TVKLD 231 (798)
Q Consensus 227 ~v~~~ 231 (798)
+|.++
T Consensus 604 ~V~y~ 608 (608)
T KOG4212|consen 604 KVTYF 608 (608)
T ss_pred eeeeC
Confidence 99763
No 194
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.62 E-value=5.1e-06 Score=81.61 Aligned_cols=185 Identities=16% Similarity=0.090 Sum_probs=130.6
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH---HH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTL---HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSL---VT 368 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~ 368 (798)
....+..++..|...|++++|+..|+++.... +.+. .++..+..+|.+.|++++|+..|+++++.... +. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHH
Confidence 45567778888999999999999999998863 2122 46778888999999999999999999876321 22 25
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 003749 369 YSIIVGGFAKM--------GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYH 440 (798)
Q Consensus 369 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 440 (798)
+..+..++.+. |++++|++.|+++...... +...+..+..... .. .... ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~------~~~~--------~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LR------NRLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HH------HHHH--------HHHH
Confidence 66666677655 7888999999998876433 2223322211110 00 0000 1123
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003749 441 MMMDGYTIIGNEEKCLIVFERLKECGF--SPSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (798)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (798)
.+...|.+.|++.+|+..|.+..+... ......+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566788999999999999999887632 123568889999999999999999998888764
No 195
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.62 E-value=6e-06 Score=76.90 Aligned_cols=160 Identities=12% Similarity=0.065 Sum_probs=110.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003749 580 MPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASL 659 (798)
Q Consensus 580 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 659 (798)
..+-..+.-.|+-+....+......... .|....+.++....+.|++.+|+..|++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 4444555666666666666665443322 255566667777777788888888887777654 66777788887788888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003749 660 GDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLM 739 (798)
Q Consensus 660 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 739 (798)
|+.++|..-|.+..+.... +...++.|...|.-.|+++.|..++....... ..|..+-..|.-+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 8888888777777776543 55666777777777788888888777777654 346667777777777778887777776
Q ss_pred HHHH
Q 003749 740 QQMK 743 (798)
Q Consensus 740 ~~m~ 743 (798)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 5543
No 196
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.61 E-value=6.7e-08 Score=90.28 Aligned_cols=88 Identities=23% Similarity=0.362 Sum_probs=79.1
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
.+|+|.||++.|++++|+++|..||.++.+-+..| .+|++.|.|-|.|...++|.+|++.+ ||+.++|+++++...
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~--~~G~s~Gta~v~~~r~~DA~~avk~~--~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD--RAGRSLGTADVSFNRRDDAERAVKKY--NGVALDGRPMKIEII 159 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccC--CCCCCCccceeeecchHhHHHHHHHh--cCcccCCceeeeEEe
Confidence 58999999999999999999999998888888775 67999999999999999999999999 999999999999988
Q ss_pred cccchhhHHHHh
Q 003749 232 DGRRLKNKAEVR 243 (798)
Q Consensus 232 ~~~~~~~~~~~~ 243 (798)
.+.....+..+.
T Consensus 160 ~~~~~~~r~~~~ 171 (243)
T KOG0533|consen 160 SSPSQSKRLPVG 171 (243)
T ss_pred cCcccccccccc
Confidence 777766555543
No 197
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.61 E-value=4.2e-08 Score=92.39 Aligned_cols=82 Identities=23% Similarity=0.341 Sum_probs=76.1
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
-+...+||||+.+.++.++++..|+.||.|..+.+..| +.+|.+|||+||+|.+.+.+..++. | ||..|.|+.+.|
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d-~~~~~~k~~~yvef~~~~~~~~ay~-l--~gs~i~~~~i~v 174 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKD-KFRGHPKGFAYVEFSSYELVEEAYK-L--DGSEIPGPAIEV 174 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeecc-ccCCCcceeEEEecccHhhhHHHhh-c--CCccccccccee
Confidence 44569999999999999999999999999999999999 8899999999999999999999998 7 999999999999
Q ss_pred eccccc
Q 003749 229 KLDDGR 234 (798)
Q Consensus 229 ~~~~~~ 234 (798)
.+.+-+
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 877555
No 198
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.60 E-value=2.1e-05 Score=88.32 Aligned_cols=239 Identities=14% Similarity=0.101 Sum_probs=157.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (798)
+...+-.|+..|...+++++|.++.+..++.. +-....|..++..+...++..++..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 55578899999999999999999999887752 22455566666677777776665544 2333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHH
Q 003749 410 AQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSK 489 (798)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 489 (798)
......++.-+..+...|.+. .-+..++..|+.+|-+.|+.++|..+|+++++.... |..+.|.+...|+.. ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHH
Confidence 344444554444445555553 234568888999999999999999999999998744 888999999999999 9999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 003749 490 ALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQK 569 (798)
Q Consensus 490 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 569 (798)
|++++.+.... |...+++..+..+|.++....+. |...+..+++.....-
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~-------------- 217 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR-------------- 217 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh--------------
Confidence 99999888763 55667788888888887775433 2222222222211110
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 570 ERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622 (798)
Q Consensus 570 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 622 (798)
+..--..++..+...|-..++|+++..+++.+.+.... |.....-++.+|.
T Consensus 218 -~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 -EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred -ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 11112233444555566666677777777777665443 4445555555554
No 199
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.60 E-value=2.7e-08 Score=87.63 Aligned_cols=78 Identities=21% Similarity=0.318 Sum_probs=71.0
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
.+|||+|+...|+|+.|.++|-+.|+|..|.|..+ ..++.| ||||+|.++-++.-|+..+ ||..+.++.++|++.
T Consensus 10 rtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~--~d~~~k-Fa~v~f~~E~sv~~a~~L~--ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 10 RTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSG--QDQEQK-FAYVFFPNENSVQLAGQLE--NGDDLEEDEEQRTLR 84 (267)
T ss_pred hHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCC--ccCCCc-eeeeecccccchhhhhhhc--ccchhccchhhcccc
Confidence 48999999999999999999999999999999876 346667 9999999999999999998 999999999999876
Q ss_pred ccc
Q 003749 232 DGR 234 (798)
Q Consensus 232 ~~~ 234 (798)
.+.
T Consensus 85 ~G~ 87 (267)
T KOG4454|consen 85 CGN 87 (267)
T ss_pred cCC
Confidence 554
No 200
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=3.8e-08 Score=89.55 Aligned_cols=73 Identities=32% Similarity=0.663 Sum_probs=67.6
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
.++|||+|++.+.+.+|+.+|.+||.+.++.+. .||+||+|++..+|..|+..+ |+..|.|..+.|+++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---------~gf~fv~fed~rda~Dav~~l--~~~~l~~e~~vve~~ 70 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK---------NGFGFVEFEDPRDADDAVHDL--DGKELCGERLVVEHA 70 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee---------cccceeccCchhhhhcccchh--cCceecceeeeeecc
Confidence 379999999999999999999999999999885 579999999999999999999 999999999999999
Q ss_pred cccc
Q 003749 232 DGRR 235 (798)
Q Consensus 232 ~~~~ 235 (798)
+...
T Consensus 71 r~~~ 74 (216)
T KOG0106|consen 71 RGKR 74 (216)
T ss_pred cccc
Confidence 8653
No 201
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.58 E-value=1e-05 Score=79.49 Aligned_cols=187 Identities=11% Similarity=-0.051 Sum_probs=134.4
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh--hh
Q 003749 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS---LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNA--II 403 (798)
Q Consensus 329 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 403 (798)
.....+..+...+.+.|++++|...|+++++.. +.+ ..++..++.+|.+.|++++|+..|+++.+....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 356677888889999999999999999998863 212 246788899999999999999999999887543222 25
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 003749 404 YGNIIYAQCQT--------RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYG 475 (798)
Q Consensus 404 ~~~l~~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 475 (798)
+..+..++.+. |+.++|.+.|+++.+.. +.+...+..+..... .. ..+ .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~------~~~--------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LR------NRL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HH------HHH--------HHHHH
Confidence 66666666654 77889999999988764 222223322221111 00 000 01122
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003749 476 CLINLYTKIGKVSKALEVSKVMKSSGI--KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD 535 (798)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (798)
.+...|.+.|++++|+..+....+... ......+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566789999999999999999987632 223578889999999999999999999988764
No 202
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.58 E-value=8.1e-06 Score=76.69 Aligned_cols=119 Identities=15% Similarity=0.136 Sum_probs=86.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCC--hHHH
Q 003749 624 KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKAC-CKSGR--MQSA 700 (798)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 700 (798)
.++.++++..++..++.+ +.+...|..+...|...|++++|...|+++...... +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 456667777777766654 556777777777888888888888888887776644 666777777653 56666 4788
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003749 701 LAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (798)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (798)
..++++..+.+ +.+...+..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888887766 556777777888888888888888888887765
No 203
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=1.2e-07 Score=96.76 Aligned_cols=74 Identities=15% Similarity=0.424 Sum_probs=69.1
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
..|||| +++|+.+|.+.|+.+|+|.++++.+| . | +-|||||.|.++++|.+|+..+ |...++|+++++-|+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d-~-t--slgy~yvnf~~~~da~~A~~~~--n~~~~~~~~~rim~s 72 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRD-A-T--SLGYAYVNFQQPADAERALDTM--NFDVLKGKPIRIMWS 72 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeec-C-C--ccceEEEecCCHHHHHHHHHHc--CCcccCCcEEEeehh
Confidence 479999 99999999999999999999999998 4 4 9999999999999999999999 999999999999988
Q ss_pred ccc
Q 003749 232 DGR 234 (798)
Q Consensus 232 ~~~ 234 (798)
...
T Consensus 73 ~rd 75 (369)
T KOG0123|consen 73 QRD 75 (369)
T ss_pred ccC
Confidence 444
No 204
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.56 E-value=6.6e-08 Score=94.54 Aligned_cols=84 Identities=26% Similarity=0.489 Sum_probs=76.8
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
...+||||+|+.+++++++++.|.+||.|..+.++.| +.+.+++||+||.|.+.+++.+++.. .-+.|.|+.+.|+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d-~~~~~~rgFgfv~~~~e~sVdkv~~~---~f~~~~gk~vevk 171 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYD-KTTSRPRGFGFVTFDSEDSVDKVTLQ---KFHDFNGKKVEVK 171 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeec-ccccccccceeeEeccccccceeccc---ceeeecCceeeEe
Confidence 3458999999999999999999999999999999999 89999999999999999999999864 5888999999999
Q ss_pred cccccchh
Q 003749 230 LDDGRRLK 237 (798)
Q Consensus 230 ~~~~~~~~ 237 (798)
.|.++..-
T Consensus 172 rA~pk~~~ 179 (311)
T KOG4205|consen 172 RAIPKEVM 179 (311)
T ss_pred eccchhhc
Confidence 99888644
No 205
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.56 E-value=1.6e-07 Score=89.18 Aligned_cols=80 Identities=25% Similarity=0.293 Sum_probs=73.0
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcce--------EEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIK--------NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE 220 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~ 220 (798)
..++.|||.|||.++|.+++.++|++||-|. .|++.++ ..|+.||=|.|.|-..+++.-|+..| ++..
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd--~~G~lKGDaLc~y~K~ESVeLA~~il--De~~ 207 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD--NQGKLKGDALCCYIKRESVELAIKIL--DEDE 207 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec--CCCCccCceEEEeecccHHHHHHHHh--Cccc
Confidence 4456899999999999999999999999986 5888887 45999999999999999999999999 9999
Q ss_pred ecceeeeeeccc
Q 003749 221 FHGRVLTVKLDD 232 (798)
Q Consensus 221 ~~g~~~~v~~~~ 232 (798)
+.|+.|+|+.|+
T Consensus 208 ~rg~~~rVerAk 219 (382)
T KOG1548|consen 208 LRGKKLRVERAK 219 (382)
T ss_pred ccCcEEEEehhh
Confidence 999999998873
No 206
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.51 E-value=2.8e-05 Score=73.06 Aligned_cols=125 Identities=10% Similarity=0.041 Sum_probs=78.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--hHHH
Q 003749 589 AGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGY-ASLGD--TGKA 665 (798)
Q Consensus 589 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~-~~~g~--~~~A 665 (798)
.++.+++...++...+.+.. +...|..|...|...|++++|...|++..+.. ..+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45556666666666655443 66667777667777777777777777666653 33555566666543 45555 4677
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 003749 666 FEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTF 717 (798)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 717 (798)
.++++++++.+.. +...+..+..++.+.|++++|...|+++.+.. +++..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~ 179 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVN 179 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcc
Confidence 7777777766544 56666677777777777777777777776654 34433
No 207
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.50 E-value=2.3e-05 Score=73.10 Aligned_cols=159 Identities=13% Similarity=0.089 Sum_probs=100.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003749 300 GLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (798)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (798)
..+-+.+...|+-+.+..+........ ..|....+..++...+.|++.+|+..|.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 344455556666666666655544331 3355555567777777777777777777776653 44677777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 003749 380 GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459 (798)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (798)
|++++|..-|.+..+.... +....+++...|.-.|+++.|..++......+ .-+..+-..|.......|++++|..+-
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777777777665322 55566666666667777777777776666653 335555566666666666666666655
Q ss_pred HHH
Q 003749 460 ERL 462 (798)
Q Consensus 460 ~~~ 462 (798)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 443
No 208
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=5.2e-05 Score=70.62 Aligned_cols=149 Identities=16% Similarity=0.178 Sum_probs=77.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----C
Q 003749 585 GFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASL----G 660 (798)
Q Consensus 585 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~----g 660 (798)
.|.+.+++++|++...... +......=+..+.+..+++-|.+.+++|.+. .+..|.+.|..++.+. +
T Consensus 117 i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred HhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccch
Confidence 4556666666665554411 1112222223344555666666666666543 2445555555554432 3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHH
Q 003749 661 DTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWE-AADLM 739 (798)
Q Consensus 661 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~ 739 (798)
.+.+|.-+|++|.+. ..|+..+.+....++...||+++|..+++++.... ..+..+...++-.-...|.-.+ ..+.+
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 456666666666543 34566666666666666666666666666666554 3455555555544444553322 33444
Q ss_pred HHHHH
Q 003749 740 QQMKQ 744 (798)
Q Consensus 740 ~~m~~ 744 (798)
.+++.
T Consensus 266 ~QLk~ 270 (299)
T KOG3081|consen 266 SQLKL 270 (299)
T ss_pred HHHHh
Confidence 44443
No 209
>PF12854 PPR_1: PPR repeat
Probab=98.48 E-value=2e-07 Score=58.40 Aligned_cols=32 Identities=34% Similarity=0.663 Sum_probs=17.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 361 GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEA 392 (798)
Q Consensus 361 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 392 (798)
|+.||..||++||.+||+.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 210
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.00014 Score=67.82 Aligned_cols=48 Identities=19% Similarity=0.354 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 003749 522 WANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKE 570 (798)
Q Consensus 522 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 570 (798)
+.+|.-+|++|.+. ..|+..+.+.+..++...|++++|..+++.....
T Consensus 189 ~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 44444444444332 2233444444444444444444444444444443
No 211
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.46 E-value=1.1e-05 Score=71.67 Aligned_cols=94 Identities=10% Similarity=-0.123 Sum_probs=51.7
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003749 335 TNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT 414 (798)
Q Consensus 335 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (798)
..+...+...|++++|+..|+..+... +.+..+|..++.++.+.|++++|+..|+++...+. .+...+..+..++...
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHc
Confidence 344455555566666666665555543 22455555555555556666666666665555432 2455555555555555
Q ss_pred CChHHHHHHHHHHHHc
Q 003749 415 RNMERAEALVRDMEEE 430 (798)
Q Consensus 415 g~~~~A~~~~~~m~~~ 430 (798)
|+.++|...|+..++.
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 5555555555555554
No 212
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.46 E-value=6.4e-05 Score=83.93 Aligned_cols=135 Identities=13% Similarity=0.005 Sum_probs=80.1
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 003749 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (798)
Q Consensus 328 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (798)
..+...+-.|.......|++++|..+++...+.. +-+...+..++..+.+.+++++|+..+++....... +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 3345556666666666666666666666666642 123445556666666666666666666666655332 45555556
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003749 408 IYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465 (798)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (798)
..++.+.|++++|.++|+++...+ +-+..++..+...+...|+.++|...|++..+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666666666532 334556666666666666666666666666553
No 213
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.45 E-value=1.8e-05 Score=70.30 Aligned_cols=91 Identities=12% Similarity=-0.133 Sum_probs=44.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003749 652 IMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGD 731 (798)
Q Consensus 652 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 731 (798)
+...+...|++++|...|..++..... +...|..+..++.+.|++++|...|+++...+ +.+...+..++.++.+.|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 344444455555555555555444322 44444555555555555555555555555443 3444445555555555555
Q ss_pred HHHHHHHHHHHHH
Q 003749 732 VWEAADLMQQMKQ 744 (798)
Q Consensus 732 ~~~A~~~~~~m~~ 744 (798)
+++|+..|++.++
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 214
>PF12854 PPR_1: PPR repeat
Probab=98.44 E-value=3.1e-07 Score=57.58 Aligned_cols=32 Identities=38% Similarity=0.616 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 711 KIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (798)
Q Consensus 711 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (798)
|+.||..+||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666665
No 215
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.42 E-value=6.3e-07 Score=93.14 Aligned_cols=86 Identities=20% Similarity=0.366 Sum_probs=73.9
Q ss_pred cccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCC--CCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNN--FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~ 225 (798)
-+..+++|||||++.++++.|-..|+.||+|..|+|.--+.. ..+.+.||||.|-+..++.+|++.| +|..+.++.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~l--qg~iv~~~e 248 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKEL--QGIIVMEYE 248 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHh--cceeeeeee
Confidence 345679999999999999999999999999999999864222 2233679999999999999999999 999999999
Q ss_pred eeeecccccc
Q 003749 226 LTVKLDDGRR 235 (798)
Q Consensus 226 ~~v~~~~~~~ 235 (798)
+++.|.+.-.
T Consensus 249 ~K~gWgk~V~ 258 (877)
T KOG0151|consen 249 MKLGWGKAVP 258 (877)
T ss_pred eeeccccccc
Confidence 9999986543
No 216
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.40 E-value=0.00014 Score=81.18 Aligned_cols=181 Identities=10% Similarity=0.097 Sum_probs=125.9
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003749 575 TSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMH 654 (798)
Q Consensus 575 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 654 (798)
+...+..|.....+.|.+++|+.+++.+.+.... +......++..+.+.+++++|+..+++..... .-+......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 5677777888888888888888888888876443 56667777788888888888888888887764 345566777777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003749 655 GYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWE 734 (798)
Q Consensus 655 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 734 (798)
++.+.|++++|..+|+++...+. -+..++..+..++.+.|+.++|...|++..+.. .+....|+.++. +...
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~ 234 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNA 234 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHH
Confidence 88888888888888888887443 257788888888888888888888888887654 344455554443 2333
Q ss_pred HHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcC
Q 003749 735 AADLMQQMKQE----GVQPDVHTYTSFINACSKAG 765 (798)
Q Consensus 735 A~~~~~~m~~~----g~~pd~~~~~~l~~~~~~~g 765 (798)
-..+++++.-. |..-......+.|.-+.+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 235 DLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred HHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 34455554322 22233445666666665544
No 217
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.36 E-value=4.7e-07 Score=92.09 Aligned_cols=69 Identities=23% Similarity=0.438 Sum_probs=63.1
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
.++|+|-|||..|++++|+++|+.||+|++|+... ..+|..||+|-|.-+|++|+++| |+..+.|+.++
T Consensus 75 ~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~------~~~~~~~v~FyDvR~A~~Alk~l--~~~~~~~~~~k 143 (549)
T KOG4660|consen 75 QGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP------NKRGIVFVEFYDVRDAERALKAL--NRREIAGKRIK 143 (549)
T ss_pred cceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc------ccCceEEEEEeehHhHHHHHHHH--HHHHhhhhhhc
Confidence 34999999999999999999999999999975543 34899999999999999999999 99999999988
No 218
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=98.31 E-value=3.7e-05 Score=77.22 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=12.0
Q ss_pred ecCCCccCchHHHHHHhcccCcceEE
Q 003749 156 VGNLPNWIKKHLVMEFFRQFGPIKNV 181 (798)
Q Consensus 156 v~nl~~~~~~~~l~~~f~~~g~v~~~ 181 (798)
...|+..-...+|..-..+-|..+.|
T Consensus 486 ~t~~~~~dgR~~LmaqIRqG~~Lk~v 511 (569)
T KOG3671|consen 486 TTALSSGDGRDALMAQIRQGGQLKKV 511 (569)
T ss_pred eccCcCcccHHHHHHHHHhccccccc
Confidence 33444333444554444454555544
No 219
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=0.00025 Score=72.19 Aligned_cols=120 Identities=9% Similarity=-0.002 Sum_probs=65.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (798)
.+...|++++|+..++.++.. .+-|.+.+.....++.+.++..+|.+.++++.... +.....+..+..+|.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence 344555666666666655544 22245555555555666666666666666665542 1124445555566666666666
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 455 CLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVM 497 (798)
Q Consensus 455 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (798)
|+.++++..... +-|...|..|..+|...|+..++.....++
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 666665555442 225556666666666666666555555444
No 220
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.29 E-value=3.8e-05 Score=67.82 Aligned_cols=109 Identities=12% Similarity=0.067 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003749 646 EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDG 725 (798)
Q Consensus 646 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 725 (798)
......+...+...|++++|.+.|+++...+.. +...+..+..+|.+.|++++|..+++...+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 344555666677777777777777777766533 66677777777777777888887777776655 5566677777777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 726 WARRGDVWEAADLMQQMKQEGVQPDVHTYTSFI 758 (798)
Q Consensus 726 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~ 758 (798)
|...|++++|+..|++..+. .|+...+..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 125 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI--CGENPEYSELK 125 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh--ccccchHHHHH
Confidence 77788888888888777763 45554444333
No 221
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=0.00034 Score=71.27 Aligned_cols=112 Identities=16% Similarity=0.189 Sum_probs=48.8
Q ss_pred HcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003749 552 CGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAI 631 (798)
Q Consensus 552 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 631 (798)
...|.+++|+..++.++..... |...+....+.+.+.++.++|.+.++++...... .....-.+..+|.+.|+..+|+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHH
Confidence 3444455555555544443221 3333333344444445555555555444443211 1333334444444444444444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003749 632 EILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAF 666 (798)
Q Consensus 632 ~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~ 666 (798)
.++++..... +-|...|..|..+|...|+..++.
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHH
Confidence 4444444332 334444444444444444444443
No 222
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.00068 Score=62.89 Aligned_cols=185 Identities=13% Similarity=0.094 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003749 312 MHRARQTFENMRAR---G-IEPTLH-VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAAD 386 (798)
Q Consensus 312 ~~~A~~~~~~~~~~---~-~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 386 (798)
.++.++++..+... | ..++.. .|-.++-+....|+.+-|..+++.+..+ ++-+..+-..-...+--.|++++|+
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHH
Confidence 45555555555432 2 333443 3455666667778888888888888776 4333333333333344568888888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003749 387 HWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG 466 (798)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (798)
++|+.+.+.+ +.|..++-.-+.+.-..|+--+|++.+.+..+. +..|...|..+...|...|++++|.-.++++.-..
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 8888888876 446777777666777777777887777777765 46678888888888888888888888888887643
Q ss_pred CCcCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHC
Q 003749 467 FSPSIISYGCLINLYTKIG---KVSKALEVSKVMKSS 500 (798)
Q Consensus 467 ~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 500 (798)
. -+...+..+...+.-.| +.+.+..+|.+..+.
T Consensus 185 P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 185 P-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred C-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 2 14444555555443333 456677777777765
No 223
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.26 E-value=0.00074 Score=71.10 Aligned_cols=236 Identities=13% Similarity=0.106 Sum_probs=148.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCC--------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003749 363 EMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER-HATL--------NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID 433 (798)
Q Consensus 363 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 433 (798)
.|....|..|.......-.++.|...|-+.... |++. +...-. ..+-.--|+|++|++++-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~--aei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQR--AEISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHh--HhHhhhhcchhHhhhhhhccchhh--
Confidence 367788888888777777777777777655321 1110 000111 112223488999999998887764
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003749 434 APIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS----IISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTY 509 (798)
Q Consensus 434 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 509 (798)
..+..+.+.|++-....++.. -|-..| ...|+.+...++....+++|.++|..-...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------- 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------- 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------
Confidence 245667777877765555432 211111 357888888888888899988888765421
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 003749 510 SMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARA 589 (798)
Q Consensus 510 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 589 (798)
...+.+|.+..++++...+...+.+ +....-.+..++...|.-++|.+.|-+... . ...+..|...
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~---p------kaAv~tCv~L 891 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSL---P------KAAVHTCVEL 891 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccC---c------HHHHHHHHHH
Confidence 2356777777777777666655433 556677888999999999999887754321 1 2356678888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 590 GEMKRALEIFDMMRRSGCIPTVHTF--------------NALILGLVEKRQMEKAIEILDEMTL 639 (798)
Q Consensus 590 ~~~~~a~~~~~~~~~~~~~p~~~~~--------------~~li~~~~~~~~~~~A~~~~~~m~~ 639 (798)
++|.+|.++-+...- |.+.+. ..-|..+.+.|+.-+|.+++.+|.+
T Consensus 892 nQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 892 NQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 888888887665321 122221 1123445566666677777777754
No 224
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.25 E-value=4.3e-05 Score=67.46 Aligned_cols=99 Identities=14% Similarity=0.089 Sum_probs=71.3
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
......+...+...|++++|++.|+.+...+ ..+...|..+...|.+.|++++|..+|++.++.+ +.+..++..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3444556677777788888888888877764 4466677777777777788888888887777654 3356677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcC
Q 003749 376 FAKMGNAEAADHWFEEAKERH 396 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~ 396 (798)
|...|++++|+..|+...+.+
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHhc
Confidence 778888888888887777653
No 225
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.0034 Score=58.45 Aligned_cols=163 Identities=11% Similarity=0.097 Sum_probs=81.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003749 474 YGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCG 553 (798)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 553 (798)
|..++-+....|+.+.|...++.+...- +-+..+-..-...+-..|++++|+++|+.+++.++. |.+++-.-+.+.-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHH
Confidence 4444455555666666666666665542 212222222222233456666666666666665433 55555555555555
Q ss_pred CCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHH
Q 003749 554 MGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKR---QMEKA 630 (798)
Q Consensus 554 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~---~~~~A 630 (798)
.|+.-+|++-+.+..+.-. .|...|.-+...|...|++++|.-.++++.-..+. +...+..+.+.+.-.| +++.|
T Consensus 133 ~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5555555555555554432 25556666666666666666666666655543221 3333333433332222 34445
Q ss_pred HHHHHHHHHC
Q 003749 631 IEILDEMTLA 640 (798)
Q Consensus 631 ~~~~~~m~~~ 640 (798)
.++|.+.++.
T Consensus 211 rkyy~~alkl 220 (289)
T KOG3060|consen 211 RKYYERALKL 220 (289)
T ss_pred HHHHHHHHHh
Confidence 5555555443
No 226
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=0.0018 Score=64.49 Aligned_cols=158 Identities=9% Similarity=0.042 Sum_probs=78.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCC-----------HHHHH
Q 003749 479 NLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLIN--GFLKLKDWANVFAVFEDVMRDGLKPD-----------VVLYN 545 (798)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~g~~~~-----------~~~~~ 545 (798)
.++...|++++|.++-..+.+.+ ....+..+++ ++.-..+.+.+...|.+.++.++... ...+.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence 34555566666665555554432 1112222222 22334555666666655554432110 00111
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCC---CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 546 NIIRAFCGMGNMDRAIHIVKEMQKERH---RPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622 (798)
Q Consensus 546 ~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 622 (798)
.-.....+.|++.+|.+.|.+.+...+ .++...|........+.|+.++|+.-.++..+.+.. -+..+..-..++.
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l 332 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHL 332 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHH
Confidence 222334567777777777777765532 233344444455566677777777777776653110 1112222223455
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 003749 623 EKRQMEKAIEILDEMTLA 640 (798)
Q Consensus 623 ~~~~~~~A~~~~~~m~~~ 640 (798)
..++|++|.+-|+...+.
T Consensus 333 ~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 566777777777765544
No 227
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.10 E-value=0.00053 Score=68.96 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=13.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 003749 303 VNYYARRGDMHRARQTFENMRA 324 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~ 324 (798)
.+.|-..|++++|.+.|.+...
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHH
Confidence 4556666777777777766554
No 228
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.07 E-value=0.018 Score=58.35 Aligned_cols=434 Identities=11% Similarity=0.097 Sum_probs=219.1
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHh
Q 003749 307 ARRGDMHRARQTFENMRARGIEPT------LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG--GFAK 378 (798)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~--~~~~ 378 (798)
-+.+++.+|.++|.+..+.- ..+ ....+.+|++|.. .+++.....+.++.+.- + ...|..+.. .+.+
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 35677888888888877652 222 2234566666654 34555555555554431 1 122333333 3446
Q ss_pred cCCHHHHHHHHHHHHhc--CCCC------------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCChhhHH
Q 003749 379 MGNAEAADHWFEEAKER--HATL------------NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGI----DAPIDIYH 440 (798)
Q Consensus 379 ~g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~~ 440 (798)
.+++.+|++.|...... +..+ |...-+..+..+.+.|++.++..++++++..=+ ..+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 77788888877766544 2111 111222345566788888888888877766433 36777777
Q ss_pred HHHHHHHhcC---------------CHHHHHHHHHHHHHC------CCCcCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 003749 441 MMMDGYTIIG---------------NEEKCLIVFERLKEC------GFSPSIISYGCLINLYTKI--GKVSKALEVSKVM 497 (798)
Q Consensus 441 ~l~~~~~~~g---------------~~~~A~~~~~~~~~~------~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m 497 (798)
.++-++.+.= .++.++-+..+|... .+-|.......++....-. .+..--.++++..
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 7555543311 011111111222111 0111111111111111111 1111223333333
Q ss_pred HHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 003749 498 KSSGIKHNMK-TYSMLINGFLKLKDWANVFAVFEDVMRDGLK----PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERH 572 (798)
Q Consensus 498 ~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 572 (798)
...-+.|+.. +...|+..+.+ +.+++..+.+.+....++ --..++..++....+.++..+|.+.+.-+.....
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 3333344322 33334444433 455555555444332111 1234677778888888888888888877765533
Q ss_pred CCCc-----ccHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH---HHHHhcCC-HHHHHHHHHHHHH
Q 003749 573 RPTS-----RTFMPIIHGFAR----AGEMKRALEIFDMMRRSGCIPTVHTFNALI---LGLVEKRQ-MEKAIEILDEMTL 639 (798)
Q Consensus 573 ~~~~-----~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li---~~~~~~~~-~~~A~~~~~~m~~ 639 (798)
.... .+-..+-+..+. .-+...-+.+|..+...++. ......-|+ .-+.+.|+ -++|+++++....
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 2110 011112222221 11233444555555544332 111222222 23555665 7788888888775
Q ss_pred CCCCCCHHHHHHHH----HHHHhc---CChHHHHHHHHHHHHcCCCC----CHHHHHHHHHH--HHHcCChHHHHHHHHH
Q 003749 640 AGISPNEHTYTTIM----HGYASL---GDTGKAFEYFTKLRNEGLEL----DVFTYEALLKA--CCKSGRMQSALAVTKE 706 (798)
Q Consensus 640 ~~~~p~~~t~~~li----~~~~~~---g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 706 (798)
-. .-|...-|.+. .+|... ..+.+-+++-+-+.+.|+.+ +...-|.|.++ +...|++.++.-+-.-
T Consensus 409 ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~W 487 (549)
T PF07079_consen 409 FT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSW 487 (549)
T ss_pred hc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 32 22333222222 233221 22344444444445666653 34455666554 4567888888776655
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003749 707 MSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTS 756 (798)
Q Consensus 707 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 756 (798)
+.+ +.|+..+|..++-++....++++|..++..+ .|+..+++.
T Consensus 488 L~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 488 LTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 555 4689999999999999999999999998875 455555554
No 229
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.07 E-value=0.00012 Score=75.52 Aligned_cols=123 Identities=13% Similarity=0.199 Sum_probs=72.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003749 334 YTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ 413 (798)
Q Consensus 334 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 413 (798)
-..|++.+...++++.|+++|+++.+.. |+ ....++..+...++-.+|++++++..... +.+..........|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3444555555667777777777776652 22 34456666666666667777776666542 2244445455555666
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 414 TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL 462 (798)
Q Consensus 414 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (798)
.++.+.|+++.+++.+.. +.+..+|..|+.+|...|+++.|+..++.+
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 666666666666666652 334456666666666666666666555544
No 230
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.0019 Score=64.21 Aligned_cols=274 Identities=14% Similarity=0.019 Sum_probs=134.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (798)
.+.+..++.+|+..+..+++.... ++.-|..-+..+...+++++|.--.+.-++.. +-....+....+++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHH
Confidence 445556666666666666665433 34555555556666666666665554444332 1112233334444444444445
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHH-HHHHhcCCHHHHHHHHHHH
Q 003749 455 CLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGI-KHNMKTYSMLI-NGFLKLKDWANVFAVFEDV 532 (798)
Q Consensus 455 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~ 532 (798)
|.+.|+ |...| ....++..++....... .|...+|..|- .++.-.+++++|..+--.+
T Consensus 136 A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 136 AEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 444444 11111 11222333333322211 23344444443 3455678888888887777
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCccc-------------HHHHHHHHHhcCCHHHHHHHH
Q 003749 533 MRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRT-------------FMPIIHGFARAGEMKRALEIF 599 (798)
Q Consensus 533 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~~~~~~a~~~~ 599 (798)
++.... +......-..++.-.++.+.|...|++.+..+. +-.. +..-.+-..+.|.+..|.+.|
T Consensus 196 lkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp--dh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Y 272 (486)
T KOG0550|consen 196 LKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDP--DHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECY 272 (486)
T ss_pred Hhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccCh--hhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHH
Confidence 765322 222222223345567788888888888776542 1111 111112234556666666666
Q ss_pred HHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 600 DMMRRSG---CIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN-EHTYTTIMHGYASLGDTGKAFEYFTKLRNE 675 (798)
Q Consensus 600 ~~~~~~~---~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~~~~~ 675 (798)
.+.+... ..++...|........+.|+..+|+.--++..+.+ +. ...|..-..++...++|++|.+-|++..+.
T Consensus 273 teal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 273 TEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6665432 22334445445555556666666666555554321 10 112222223444455666666666666554
No 231
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.04 E-value=0.00014 Score=74.99 Aligned_cols=127 Identities=14% Similarity=0.096 Sum_probs=107.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
+.-..|+..+...++++.|+++|+++.+. .|++ ...+++.+...++-.+|++++++.++.. +.+..........+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44556777788889999999999999998 3554 4468888888899999999999999763 45788888889999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003749 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 429 (798)
.+.++++.|+++.+++.... +.+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999999873 33677999999999999999999999987764
No 232
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.03 E-value=2.3e-05 Score=69.85 Aligned_cols=66 Identities=11% Similarity=0.158 Sum_probs=55.0
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH 222 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~ 222 (798)
-..+|||.||..+++|++|+.+|+.|..+..++|.. ..|. ..+|++|++.+.|..|+..| +|..|.
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~---~~g~--~vaf~~~~~~~~at~am~~l--qg~~~s 274 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA---RGGM--PVAFADFEEIEQATDAMNHL--QGNLLS 274 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec---CCCc--ceEeecHHHHHHHHHHHHHh--hcceec
Confidence 344899999999999999999999998888777753 2232 48999999999999999988 877664
No 233
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.03 E-value=0.021 Score=57.82 Aligned_cols=431 Identities=13% Similarity=0.136 Sum_probs=223.2
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--H
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHA--Y 341 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~ 341 (798)
.+|.++|-++.+.-..+- ..|. ....-+.++++|... +.+.-...+..+.+. .+ ...|-.+..+ +
T Consensus 23 ~esEkifskI~~e~~~~~----f~lk-----eEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 23 QESEKIFSKIYDEKESSP----FLLK-----EEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVA 89 (549)
T ss_pred hHHHHHHHHHHHHhhcch----HHHH-----HHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHH
Confidence 888999988876543210 0010 011234567777544 344444444444443 12 1223333322 3
Q ss_pred HccCChHHHHHHHHHHHHc--CCC------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCChhh
Q 003749 342 AVGRDMEEALSCVRKMKEE--GIE------------MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH----ATLNAII 403 (798)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~--g~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~ 403 (798)
.+.+.+.+|++.+..-.++ +.. .|.+.-+..+.++.+.|++.+++.+++++..+- ..++..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 4667777777776554433 111 133334566777888888888888877776543 3477778
Q ss_pred HHHHHHHHHhcCC---------------hHHHHHHHHHHHHc------CCCCChhhHHHHHHHHHhcC--CHHHHHHHHH
Q 003749 404 YGNIIYAQCQTRN---------------MERAEALVRDMEEE------GIDAPIDIYHMMMDGYTIIG--NEEKCLIVFE 460 (798)
Q Consensus 404 ~~~l~~~~~~~g~---------------~~~A~~~~~~m~~~------~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~ 460 (798)
|+.++..+.+.-- ++.+.-..++|... .+.|......+++....-.. +..--..++.
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 8775555443211 12222222222221 12233333333333322111 1112223333
Q ss_pred HHHHCCCCcCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003749 461 RLKECGFSPSII-SYGCLINLYTKIGKVSKALEVSKVMKSSGIK----HNMKTYSMLINGFLKLKDWANVFAVFEDVMRD 535 (798)
Q Consensus 461 ~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (798)
.+...-+.|+.. +...|+....+ +.+++..+.+.+....+. --..+|..++....+.++...|.+.+..+...
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 333333444422 22233333333 445555554444332111 12456777888888889988888888776654
Q ss_pred CCCCCHHHH-------HHHHHHHHcC----CChHHHHHHHHHHHHCCCCCCcc-c---HHHHHHHHHhcCC-HHHHHHHH
Q 003749 536 GLKPDVVLY-------NNIIRAFCGM----GNMDRAIHIVKEMQKERHRPTSR-T---FMPIIHGFARAGE-MKRALEIF 599 (798)
Q Consensus 536 g~~~~~~~~-------~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~-~---~~~li~~~~~~~~-~~~a~~~~ 599 (798)
.+. ...- ..+-+..+.- -+...=+.+++.....++ |.. . +.--..-+.+.|. -++|++++
T Consensus 328 dp~--~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLL 403 (549)
T PF07079_consen 328 DPR--ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLL 403 (549)
T ss_pred CCc--chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 322 2211 1122222311 123333445555544432 211 1 1112233566666 78899999
Q ss_pred HHHHHcCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHH--HHHhcCChHHHH
Q 003749 600 DMMRRSGCIPTVHTFNALI----LGLVE---KRQMEKAIEILDEMTLAGISPNE----HTYTTIMH--GYASLGDTGKAF 666 (798)
Q Consensus 600 ~~~~~~~~~p~~~~~~~li----~~~~~---~~~~~~A~~~~~~m~~~~~~p~~----~t~~~li~--~~~~~g~~~~A~ 666 (798)
+.+.+--. -|..+-|.+. ..|.+ ...+.+-+++-+-+.+.|+.|-. ..-|.|.+ .+...|++.++.
T Consensus 404 k~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 404 KLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 98876321 1333333222 12222 22344444444455566766543 33344443 346789999988
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003749 667 EYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNI 721 (798)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 721 (798)
-+-.-+.+ +.|+..+|..++-++....++++|+.++.++ +++..+++.
T Consensus 483 ~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 483 LYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 77666665 4689999999999999999999999999654 677777765
No 234
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.03 E-value=7.7e-05 Score=73.45 Aligned_cols=266 Identities=17% Similarity=0.119 Sum_probs=170.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHH--HHHc--C-CCCCHHHHHHHH
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIEPTLH----VYTNLIHAYAVGRDMEEALSCVRK--MKEE--G-IEMSLVTYSIIV 373 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~--m~~~--g-~~~~~~~~~~l~ 373 (798)
..-+++.|+.+..+.+|+.+++.|.. |.. +|.-|.++|.-.++|++|++...- .+.+ | -.-...+...|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 44578999999999999999998732 433 466777888888999999986532 1111 1 011344555677
Q ss_pred HHHHhcCCHHHHHHHHHH----HHhcCC-CCChhhHHHHHHHHHhcCC--------------------hHHHHHHHHHHH
Q 003749 374 GGFAKMGNAEAADHWFEE----AKERHA-TLNAIIYGNIIYAQCQTRN--------------------MERAEALVRDME 428 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~----~~~~~~-~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~m~ 428 (798)
..+.-.|.+++|+.+..+ ..+.|- ....-+++.+..+|...|+ ++.|.+.|.+-.
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 777778889888765433 222221 2244567788888876654 233333332211
Q ss_pred ----HcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003749 429 ----EEGI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKE----CGFS-PSIISYGCLINLYTKIGKVSKALEVSKVMK 498 (798)
Q Consensus 429 ----~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (798)
+.|- ..--..|..|.+.|.-.|+++.|+...+.-++ .|-+ .....+..|..++.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1110 00123466677777788899999887765432 2322 124567788899999999999999887654
Q ss_pred H----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 003749 499 S----SGI-KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDG-----LKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQ 568 (798)
Q Consensus 499 ~----~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 568 (798)
. .|- .....+.-.|.+.|.-..+++.|+.++.+-+... ..-....|-+|..+|...|..++|+.+.+...
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3 221 1234456678888888888999998887654321 11245567788999999999999888776654
Q ss_pred H
Q 003749 569 K 569 (798)
Q Consensus 569 ~ 569 (798)
+
T Consensus 343 ~ 343 (639)
T KOG1130|consen 343 R 343 (639)
T ss_pred H
Confidence 4
No 235
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.01 E-value=0.00031 Score=62.60 Aligned_cols=115 Identities=13% Similarity=0.072 Sum_probs=54.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHH
Q 003749 309 RGDMHRARQTFENMRARGIEPT---LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS--LVTYSIIVGGFAKMGNAE 383 (798)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~g~~~ 383 (798)
.|+...+...++.+.+.. ..+ ......+...+...|++++|...|++..+....++ ......|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 555555555555555542 112 11222333555555666666666666555431111 123334455555555555
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 003749 384 AADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRD 426 (798)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 426 (798)
+|+..++.... .......+.....+|.+.|++++|...|+.
T Consensus 103 ~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555544221 122333444445555555555555555543
No 236
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.00 E-value=4.2e-06 Score=85.15 Aligned_cols=81 Identities=22% Similarity=0.382 Sum_probs=74.9
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
++..++|+-.|...+++.+|+++|+.+|.|.+|+++.| +.++++||.+||+|.|.+++..|| +| .|..+.|-+|.|
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~D-r~s~rskgi~Yvef~D~~sVp~ai-aL--sGqrllg~pv~v 252 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAI-AL--SGQRLLGVPVIV 252 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeecc-ccchhhcceeEEEEecccchhhHh-hh--cCCcccCceeEe
Confidence 45569999999999999999999999999999999999 999999999999999999999999 56 899999999999
Q ss_pred ecccc
Q 003749 229 KLDDG 233 (798)
Q Consensus 229 ~~~~~ 233 (798)
+....
T Consensus 253 q~sEa 257 (549)
T KOG0147|consen 253 QLSEA 257 (549)
T ss_pred cccHH
Confidence 87643
No 237
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.00 E-value=0.013 Score=62.12 Aligned_cols=205 Identities=11% Similarity=0.141 Sum_probs=123.7
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003749 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE-GIEM--------SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT 398 (798)
Q Consensus 328 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (798)
.|....|..+.......-.++.|...|-+.... |+.. +...-..=+. +-.|++++|.++|-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh--
Confidence 567778888877766666777777666554331 1110 1111111122 23589999999998887663
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 003749 399 LNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG-IDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCL 477 (798)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 477 (798)
..|..+.+.|++-...++++.--... -.--...|+.+.+.+.....+++|.++|..-.. -...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 24566778888888777765311100 001145788888888888888888888775322 1235
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 003749 478 INLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNM 557 (798)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 557 (798)
+.+|.+..++++-..+...+ +-+....-.+.+++.+.|.-++|.+.|-+.- .. ...+..|...+++
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~p------kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS---LP------KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc---Cc------HHHHHHHHHHHHH
Confidence 56666666666555444333 3355566677788888888888887764421 11 2344566666777
Q ss_pred HHHHHHHHH
Q 003749 558 DRAIHIVKE 566 (798)
Q Consensus 558 ~~A~~~~~~ 566 (798)
.+|.++-+.
T Consensus 895 ~~avelaq~ 903 (1189)
T KOG2041|consen 895 GEAVELAQR 903 (1189)
T ss_pred HHHHHHHHh
Confidence 777666554
No 238
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.98 E-value=5.8e-06 Score=85.45 Aligned_cols=85 Identities=28% Similarity=0.507 Sum_probs=78.4
Q ss_pred cccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
.....++|||+||..+++..++++...||.++...++.| ..+|-++||+|.+|-++.-...|+..+ ||..+.++.|.
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d-~~~g~skg~af~ey~dpsvtd~A~agL--nGm~lgd~~lv 362 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKD-SATGNSKGFAFCEYCDPSVTDQAIAGL--NGMQLGDKKLV 362 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecc-cccccccceeeeeeeCCcchhhhhccc--chhhhcCceeE
Confidence 344569999999999999999999999999999999999 888999999999999999999999999 99999999999
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|..|....
T Consensus 363 vq~A~~g~ 370 (500)
T KOG0120|consen 363 VQRAIVGA 370 (500)
T ss_pred eehhhccc
Confidence 99885553
No 239
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.98 E-value=0.00042 Score=61.80 Aligned_cols=125 Identities=15% Similarity=0.156 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHH
Q 003749 614 FNALILGLVEKRQMEKAIEILDEMTLAGISPN---EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELD--VFTYEALL 688 (798)
Q Consensus 614 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 688 (798)
|..++..+ ..++...+...++.+.... ..+ ....-.+...+...|++++|...|+.+.+....++ ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344343 4677777777777777653 222 22333455677778888888888888887653322 23445567
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 689 KACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (798)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (798)
.++...|++++|+.+++..... ......+..++++|.+.|+.++|...|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777888888888888664332 234556777888888888888888887764
No 240
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.94 E-value=4.1e-05 Score=60.71 Aligned_cols=77 Identities=19% Similarity=0.368 Sum_probs=64.0
Q ss_pred cceeecCCCccCchHHHHHHhcc--cCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec----cee
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQ--FGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH----GRV 225 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~--~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~----g~~ 225 (798)
++|-|.|+|...|.++|.+++.. .|..--+.+..| ..++.+.|||||.|.+++.+.+-.+.+ +|..+. .+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiD-f~~~~N~GYAFVNf~~~~~~~~F~~~f--~g~~w~~~~s~Kv 78 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPID-FKNKCNLGYAFVNFTSPQAAIRFYKAF--NGKKWPNFNSKKV 78 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeee-ccCCCceEEEEEEcCCHHHHHHHHHHH--cCCccccCCCCcE
Confidence 58999999999999999888754 266667788888 778889999999999999999999988 998875 444
Q ss_pred eeeecc
Q 003749 226 LTVKLD 231 (798)
Q Consensus 226 ~~v~~~ 231 (798)
+.|.+|
T Consensus 79 c~i~yA 84 (97)
T PF04059_consen 79 CEISYA 84 (97)
T ss_pred EEEehh
Confidence 555555
No 241
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.93 E-value=1.8e-05 Score=50.47 Aligned_cols=33 Identities=45% Similarity=0.827 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003749 718 VYNILIDGWARRGDVWEAADLMQQMKQEGVQPD 750 (798)
Q Consensus 718 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 750 (798)
+||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688999999999999999999999999888887
No 242
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.88 E-value=0.039 Score=55.82 Aligned_cols=167 Identities=16% Similarity=0.198 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 003749 611 VHTFNALILGLVEKRQMEKAIEILDEMTLAG-ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTY-EALL 688 (798)
Q Consensus 611 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~ 688 (798)
..+|..+++...+..-++.|.++|-+..+.+ +.+++..++++|..++ .|+..-|..+|+--+..- +|...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHH
Confidence 4567777887788888999999999998887 5677888888887665 578889999998766542 343333 5556
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003749 689 KACCKSGRMQSALAVTKEMSAQKIPRN--TFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGD 766 (798)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~ 766 (798)
.-+...++-+.|..+|+..++. +..+ ..+|..+|+-=..-|++..+..+=++|.+ +-|-..+...+.+-|.-..+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik~d 550 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIKAD 550 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhhcc
Confidence 6678889999999999966543 1223 56899999988999999999999999987 45666666666666654443
Q ss_pred -ccccccccccchhhhhh
Q 003749 767 -MQVRFSIPMLTKFYLFS 783 (798)
Q Consensus 767 -~~~a~~~~~~~~~~~~~ 783 (798)
..+-++...+.+..-+|
T Consensus 551 a~~~~le~t~~~n~rE~s 568 (660)
T COG5107 551 AILPPLEPTYMYNEREHS 568 (660)
T ss_pred ccCCCCCchhhhhhhhhh
Confidence 34445554555443333
No 243
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.87 E-value=0.00013 Score=71.91 Aligned_cols=285 Identities=13% Similarity=0.053 Sum_probs=149.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH--H--CCCCC-CHHHHHHHHH
Q 003749 444 DGYTIIGNEEKCLIVFERLKECGFSPS----IISYGCLINLYTKIGKVSKALEVSKVMK--S--SGIKH-NMKTYSMLIN 514 (798)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~--~--~~~~~-~~~~~~~ll~ 514 (798)
.-+++.|+....+.+|+..++.|-. | ..+|..|..+|.-.+++++|+++...=+ . .|-+. ...+...|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4567888888888888888877643 3 3456666777777777888877654321 1 11110 1222333444
Q ss_pred HHHhcCCHHHHHHHHHHH----HHcCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 003749 515 GFLKLKDWANVFAVFEDV----MRDGLK-PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARA 589 (798)
Q Consensus 515 ~~~~~~~~~~a~~~~~~~----~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 589 (798)
.+--.|.|++|+-...+- .+.|-. .....+..|...|...|+.-.-.. -.+.| .++.-+ .
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g------~f~~ev-----~ 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKG------AFNAEV-----T 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcc------cccHHH-----H
Confidence 555566677666443322 121111 122233344445544332100000 00000 000000 0
Q ss_pred CCHHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhc
Q 003749 590 GEMKRALEIFDMMRR----SGCI-PTVHTFNALILGLVEKRQMEKAIEILDEMT----LAGIS-PNEHTYTTIMHGYASL 659 (798)
Q Consensus 590 ~~~~~a~~~~~~~~~----~~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~----~~~~~-p~~~t~~~li~~~~~~ 659 (798)
..++.|.++|.+-++ .|-. --...|..|...|.-.|+++.|+...+.-+ +-|-+ .....++.|..++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 012233333322111 1100 012345556666666777887776654322 11211 2234677778888888
Q ss_pred CChHHHHHHHHHHH----HcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHc
Q 003749 660 GDTGKAFEYFTKLR----NEGL-ELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ-----KIPRNTFVYNILIDGWARR 729 (798)
Q Consensus 660 g~~~~A~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 729 (798)
|+++.|.+.|+... +.|- .......-+|...|.-...++.|+.++.+-+.. +..-....|.+|..+|...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 88888888777654 3332 234555667777777777788888777654321 1223455778888888888
Q ss_pred CCHHHHHHHHHHHHH
Q 003749 730 GDVWEAADLMQQMKQ 744 (798)
Q Consensus 730 g~~~~A~~~~~~m~~ 744 (798)
|..++|+.+.+.-++
T Consensus 329 g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 329 GEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888877766554
No 244
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.86 E-value=0.00023 Score=73.66 Aligned_cols=173 Identities=12% Similarity=0.134 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 610 TVHTFNALILGLVEKRQMEKAIEILDEMTLA--GISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEAL 687 (798)
Q Consensus 610 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 687 (798)
+......+++.+....+++++..++.+.... .......|..++++.|.+.|..++++++++.=...|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4555555566665666666666666665543 11122234456666666666666666666666666666666666666
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 003749 688 LKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDM 767 (798)
Q Consensus 688 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~ 767 (798)
|+.+.+.|++..|.++...|..++...+..++..-+.+|.+-+ .-.+-|+..... -..+..--..+...|.+.|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~~---~~~~~~~~~~~~-~~~~~~EE~kvrv~~Lrn~~~ 220 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKYS---KEPKPFDDLEPK-PDLDWEEERKVRVKYLRNPYF 220 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhh---cccccccccCCC-CCCCchheEEeeeeeecCCcc
Confidence 6666666666666666666665555555555554444444431 111112211110 111222222344455566666
Q ss_pred cccccccccchhhhhhhhhh
Q 003749 768 QVRFSIPMLTKFYLFSFIWF 787 (798)
Q Consensus 768 ~~a~~~~~~~~~~~~~~~w~ 787 (798)
++-+.+.+-. .++-.+.|.
T Consensus 221 ddhfdl~~~~-L~GktLl~l 239 (429)
T PF10037_consen 221 DDHFDLTSPQ-LIGKTLLGL 239 (429)
T ss_pred ccccccCcHH-HHHHHHHHH
Confidence 6666665555 666677774
No 245
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.83 E-value=3.6e-05 Score=48.70 Aligned_cols=33 Identities=39% Similarity=0.665 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003749 717 FVYNILIDGWARRGDVWEAADLMQQMKQEGVQP 749 (798)
Q Consensus 717 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 749 (798)
.+|+.++++|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888777766
No 246
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.82 E-value=0.0017 Score=65.36 Aligned_cols=167 Identities=16% Similarity=0.259 Sum_probs=89.2
Q ss_pred HHHHHccCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003749 338 IHAYAVGRDMEEALSCVRKMKEE----GIEM-SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412 (798)
Q Consensus 338 l~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (798)
...|-..|++++|.+.|.+..+. +-.. -...|...+.+|.+. ++++|++.|++.. ..|.
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~---------------~~y~ 105 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAI---------------EIYR 105 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH---------------HHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH---------------HHHH
Confidence 34555667777777777665431 1000 112233333344333 6666666555543 4566
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHHcCC
Q 003749 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII-GNEEKCLIVFERLKEC----GFSP-SIISYGCLINLYTKIGK 486 (798)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~ 486 (798)
+.|++..|-+++.++ ...|... |++++|++.|++..+. +-.- -...+..+...+.+.|+
T Consensus 106 ~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 106 EAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred hcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 777777766665544 3455555 7788888888776543 2100 12345566777888888
Q ss_pred HHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003749 487 VSKALEVSKVMKSSGIKH-----NMK-TYSMLINGFLKLKDWANVFAVFEDVMRD 535 (798)
Q Consensus 487 ~~~A~~~~~~m~~~~~~~-----~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (798)
+++|+++|+++...-... +.. .+-..+-++...||...|.+.|++....
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888888888776643221 111 2222333455567777777777776654
No 247
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.81 E-value=0.012 Score=57.39 Aligned_cols=68 Identities=6% Similarity=-0.018 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTY---SIIVGGFAKMGNAEAADHWFEEAKERHAT 398 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (798)
+...+-.....+.+.|++++|++.|+++...- +-+.... ..++.+|.+.+++++|+..|++.++..+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 33334444555566788888888888877752 2222222 45566777788888888888887776443
No 248
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.78 E-value=0.00033 Score=56.28 Aligned_cols=81 Identities=16% Similarity=0.314 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------ChHHHHHHHHHHHHcCCCCCHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGI-EPTLHVYTNLIHAYAVGR--------DMEEALSCVRKMKEEGIEMSLVT 368 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~ 368 (798)
+....|..+...|++...-.+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|+..++.|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 345567777788999999999999999999 899999999999987653 34567889999999999999999
Q ss_pred HHHHHHHHHh
Q 003749 369 YSIIVGGFAK 378 (798)
Q Consensus 369 ~~~l~~~~~~ 378 (798)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 249
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.78 E-value=0.00032 Score=72.60 Aligned_cols=129 Identities=17% Similarity=0.169 Sum_probs=105.9
Q ss_pred HHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 003749 286 SAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRAR--GIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE 363 (798)
Q Consensus 286 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 363 (798)
..|.+....+.....++++.+....+.+++..++-+.+.. ....-..|.+++++.|.+.|..++++.+++.=...|+-
T Consensus 56 ~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF 135 (429)
T PF10037_consen 56 KKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIF 135 (429)
T ss_pred HHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccC
Confidence 3455555667778888888888888899999999988876 22223446789999999999999999999998999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003749 364 MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT 414 (798)
Q Consensus 364 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (798)
||.+++|.||+.+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 136 ~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 136 PDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred CChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999998887776777776666666655
No 250
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.76 E-value=0.00073 Score=70.21 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=54.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH
Q 003749 619 LGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQ 698 (798)
Q Consensus 619 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 698 (798)
..+...|++++|+.+|+++++.. .-+...|..+..+|...|++++|+..++++++.... +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 34455666666666666666543 334455556666666666666666666666665432 4555666666666666666
Q ss_pred HHHHHHHHHHhCC
Q 003749 699 SALAVTKEMSAQK 711 (798)
Q Consensus 699 ~A~~~~~~~~~~~ 711 (798)
+|+..|+++++.+
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 6666666666543
No 251
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.76 E-value=0.084 Score=55.96 Aligned_cols=129 Identities=12% Similarity=0.170 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLH-VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
.|+.||.---...+.+.++.++..++.. .|... .|-.....=.+.|..+.+.++|++-+. |++.+...|......+
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFL 123 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHH
Confidence 3444444443334445555555555544 33333 334444444455666666666666655 2555555555554433
Q ss_pred H-hcCCHHHHHHHHHHHHhc-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003749 377 A-KMGNAEAADHWFEEAKER-HA-TLNAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (798)
Q Consensus 377 ~-~~g~~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 429 (798)
+ ..|+-+...+.|+.+... |. -.....|...|..-..++++.....+++++++
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 3 235555556666665542 11 11333455555555555555555555555554
No 252
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.76 E-value=2.4e-05 Score=75.72 Aligned_cols=85 Identities=27% Similarity=0.409 Sum_probs=76.7
Q ss_pred cccccceeecCCCccCchHHHHHHhcccCcce--------EEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCe
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIK--------NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGV 219 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~ 219 (798)
.....+|||-+|+..+++++|..+|.+||.|+ .|.|-+| +.|+++||-|.|.|+|...|++|+.-+ ++.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~d-keT~~~KGeatvS~~D~~~akaai~~~--agk 139 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTD-KETGAPKGEATVSYEDPPAAKAAIEWF--AGK 139 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhcccc-ccccCcCCceeeeecChhhhhhhhhhh--ccc
Confidence 45566999999999999999999999999996 5778888 799999999999999999999999988 999
Q ss_pred eecceeeeeecccccc
Q 003749 220 EFHGRVLTVKLDDGRR 235 (798)
Q Consensus 220 ~~~g~~~~v~~~~~~~ 235 (798)
.+.|..|+|.++..+.
T Consensus 140 df~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 140 DFCGNTIKVSLAERRT 155 (351)
T ss_pred cccCCCchhhhhhhcc
Confidence 9999999998886553
No 253
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.75 E-value=5.9e-05 Score=59.88 Aligned_cols=81 Identities=20% Similarity=0.210 Sum_probs=43.2
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003749 309 RGDMHRARQTFENMRARGIE-PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADH 387 (798)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (798)
.|+++.|+.+|+++.+.... ++...+..+..+|.+.|++++|+.++++ .+.+. .+......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666666666666665321 1233444466666666666666666655 22211 123344445666666666666666
Q ss_pred HHHH
Q 003749 388 WFEE 391 (798)
Q Consensus 388 ~~~~ 391 (798)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 254
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.74 E-value=0.00047 Score=56.05 Aligned_cols=94 Identities=27% Similarity=0.229 Sum_probs=57.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (798)
+..+...+...|++++|+.+|+.+.+.. ..+...+..+...+...+++++|.++|+...+.. +.+..++..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445566666777777777777766653 2233556666666666677777777776666543 2234556666666666
Q ss_pred cCCHHHHHHHHHHHHh
Q 003749 379 MGNAEAADHWFEEAKE 394 (798)
Q Consensus 379 ~g~~~~A~~~~~~~~~ 394 (798)
.|++++|...|+...+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666666554
No 255
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.04 Score=51.70 Aligned_cols=156 Identities=13% Similarity=0.109 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003749 593 KRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKL 672 (798)
Q Consensus 593 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~ 672 (798)
+..+++|++-. ..+.+.++..+...|.+.-.+.++++.++.+.+-+....+.|++.-.+.||.+.|..+|+++
T Consensus 166 ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 166 ESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 55566665533 34556677777778888888888888888766677788888888888999999999999877
Q ss_pred HHcCCCCCHHHHHHH-----HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003749 673 RNEGLELDVFTYEAL-----LKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGV 747 (798)
Q Consensus 673 ~~~~~~~~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 747 (798)
.+..-..|..+++.+ ...|.-.+++.+|...+.++...+ ..|+..-|.-.-++.-.|+..+|++.++.|++.
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~-- 315 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ-- 315 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 654333343333333 334555668888888888888766 566777777766777788999999999999874
Q ss_pred CCCHHHHHHHH
Q 003749 748 QPDVHTYTSFI 758 (798)
Q Consensus 748 ~pd~~~~~~l~ 758 (798)
.|...+-++++
T Consensus 316 ~P~~~l~es~~ 326 (366)
T KOG2796|consen 316 DPRHYLHESVL 326 (366)
T ss_pred CCccchhhhHH
Confidence 56555555444
No 256
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.74 E-value=6.7e-05 Score=55.96 Aligned_cols=69 Identities=17% Similarity=0.316 Sum_probs=48.1
Q ss_pred ceeecCCCccCchHH----HHHHhcccC-cceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 153 KIFVGNLPNWIKKHL----VMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~----l~~~f~~~g-~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
.|||.|||.+.+... |++++..|| .|.+| +.|.|+|-|.+++.|.+|.+.| +|-.+.|++|.
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----------~~~tAilrF~~~~~A~RA~KRm--egEdVfG~kI~ 70 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----------SGGTAILRFPNQEFAERAQKRM--EGEDVFGNKIS 70 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------------TT-EEEEESSHHHHHHHHHHH--TT--SSSS--E
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----------eCCEEEEEeCCHHHHHHHHHhh--cccccccceEE
Confidence 689999999988875 466777886 55444 1578999999999999999999 99999999999
Q ss_pred eeccccc
Q 003749 228 VKLDDGR 234 (798)
Q Consensus 228 v~~~~~~ 234 (798)
|.+....
T Consensus 71 v~~~~~~ 77 (90)
T PF11608_consen 71 VSFSPKN 77 (90)
T ss_dssp EESS--S
T ss_pred EEEcCCc
Confidence 9998443
No 257
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.72 E-value=6.9e-05 Score=61.28 Aligned_cols=72 Identities=21% Similarity=0.348 Sum_probs=45.1
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccC---Ceeecceeeee
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD---GVEFHGRVLTV 228 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~---~~~~~g~~~~v 228 (798)
+.|+|.+++..++-++|++.|++||.|..|.+.++ ..-|||-|.++++|+.|+..+... +..+.+..+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT--------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 46888889999999999999999999999999875 457999999999999999988444 44555555544
Q ss_pred ec
Q 003749 229 KL 230 (798)
Q Consensus 229 ~~ 230 (798)
+.
T Consensus 75 ~v 76 (105)
T PF08777_consen 75 EV 76 (105)
T ss_dssp E-
T ss_pred EE
Confidence 43
No 258
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.72 E-value=0.00075 Score=67.53 Aligned_cols=131 Identities=17% Similarity=0.197 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHA-YAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
.+|..+++..-+.+..+.|+.+|.++++.+ ..+..+|-..... |...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 357777888888888889999999888653 2233444444444 22346677789999888876 56677888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLN---AIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 430 (798)
+.+.|+.+.|+.+|++.... ...+ ...|...+..-.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888899888888765 2211 236666666666667777666666666654
No 259
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.72 E-value=0.00091 Score=58.34 Aligned_cols=93 Identities=6% Similarity=-0.156 Sum_probs=48.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003749 335 TNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT 414 (798)
Q Consensus 335 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (798)
..+...+...|++++|..+|+.+...+.. +..-|..|..++-..|++.+|+..|......++ .|...+..+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 33444444555555555555555544321 444455555555555555555555555555442 2455555555555555
Q ss_pred CChHHHHHHHHHHHH
Q 003749 415 RNMERAEALVRDMEE 429 (798)
Q Consensus 415 g~~~~A~~~~~~m~~ 429 (798)
|+.+.|++.|+..+.
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555444
No 260
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.71 E-value=5.7e-05 Score=48.12 Aligned_cols=33 Identities=27% Similarity=0.584 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPT 330 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 330 (798)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555554444
No 261
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.70 E-value=0.077 Score=53.81 Aligned_cols=83 Identities=10% Similarity=0.208 Sum_probs=65.4
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
|..+|..||..|...|.+++.++++++|..- ++--..+|..-+++=....++.....+|.+.+... .+...|...+.
T Consensus 41 nI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl~ 117 (660)
T COG5107 41 NILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYLE 117 (660)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHHH
Confidence 6778899999999999999999999999864 23344577777877777789999999999988864 45777777777
Q ss_pred HHHhcC
Q 003749 375 GFAKMG 380 (798)
Q Consensus 375 ~~~~~g 380 (798)
--.+.+
T Consensus 118 YIRr~n 123 (660)
T COG5107 118 YIRRVN 123 (660)
T ss_pred HHHhhC
Confidence 555543
No 262
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.69 E-value=0.0089 Score=58.19 Aligned_cols=66 Identities=17% Similarity=0.118 Sum_probs=50.8
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHccCChHHHHHHHHHHHHcC
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVY---TNLIHAYAVGRDMEEALSCVRKMKEEG 361 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~g~~~~A~~~~~~m~~~g 361 (798)
+...+......+.+.|++++|++.|+.+.... +-+.... -.++.+|.+.+++++|+..|++.++.-
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 44445556677788999999999999999873 2223332 456688899999999999999999863
No 263
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.01 Score=55.50 Aligned_cols=145 Identities=9% Similarity=0.083 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 313 HRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEA 392 (798)
Q Consensus 313 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 392 (798)
+..++++++-.. .+.+.++.++.-.|.+.-.+.++.+.++...+.+......|++.-.+.|+.+.|...|++.
T Consensus 166 ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 166 ESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 555555554432 3556777777777888888888888888766667777788888888888888888888876
Q ss_pred HhcCCCCCh-----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003749 393 KERHATLNA-----IIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465 (798)
Q Consensus 393 ~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (798)
.+..-..|. .+..+....|...+++.+|...+.+++..+ ..+....|.-+-+..-.|+..+|++.++.|++.
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 654222222 223333344455555666666665555543 233444444444444455555555555555553
No 264
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.68 E-value=0.00074 Score=54.88 Aligned_cols=94 Identities=23% Similarity=0.266 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003749 649 YTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWAR 728 (798)
Q Consensus 649 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 728 (798)
|..+...+...|++++|..+++++.+.... +...+..+..++...|++++|..+++...... +.+...+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 344455555666666666666666654322 33555566666666666666666666666543 3344566666666666
Q ss_pred cCCHHHHHHHHHHHHH
Q 003749 729 RGDVWEAADLMQQMKQ 744 (798)
Q Consensus 729 ~g~~~~A~~~~~~m~~ 744 (798)
.|++++|...+++..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777766666554
No 265
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.68 E-value=0.0015 Score=55.88 Aligned_cols=24 Identities=8% Similarity=0.108 Sum_probs=10.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHH
Q 003749 336 NLIHAYAVGRDMEEALSCVRKMKE 359 (798)
Q Consensus 336 ~ll~~~~~~g~~~~A~~~~~~m~~ 359 (798)
.+...+.+.|++++|.+.|+++++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~ 30 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLK 30 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 266
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.67 E-value=0.00011 Score=66.59 Aligned_cols=76 Identities=20% Similarity=0.409 Sum_probs=67.4
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec-ceeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GRVLT 227 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~-g~~~~ 227 (798)
+++..+|+-|||.+++.+.+..+|.+|+..++++++.. + +|.+||+|.+...+..|..++ +|..+. ...+.
T Consensus 144 ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~-~-----~~iAfve~~~d~~a~~a~~~l--q~~~it~~~~m~ 215 (221)
T KOG4206|consen 144 PPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP-R-----SGIAFVEFLSDRQASAAQQAL--QGFKITKKNTMQ 215 (221)
T ss_pred CCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC-C-----CceeEEecchhhhhHHHhhhh--ccceeccCceEE
Confidence 34458999999999999999999999999999999975 1 689999999999999999999 998887 78888
Q ss_pred eeccc
Q 003749 228 VKLDD 232 (798)
Q Consensus 228 v~~~~ 232 (798)
|.+++
T Consensus 216 i~~a~ 220 (221)
T KOG4206|consen 216 ITFAK 220 (221)
T ss_pred ecccC
Confidence 87764
No 267
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.66 E-value=0.068 Score=54.10 Aligned_cols=103 Identities=20% Similarity=0.230 Sum_probs=49.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 003749 618 ILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRM 697 (798)
Q Consensus 618 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 697 (798)
|.-+...|+...|.++-.+.. .|+...|...+.+++..++|++..++-.. . -.+.-|.-.+.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHHHCCCH
Confidence 334444555555555443332 34555555555555555555554443221 1 1223445555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003749 698 QSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQ 740 (798)
Q Consensus 698 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 740 (798)
.+|..++.++ .+..-+..|.+.|++.+|.+.--
T Consensus 254 ~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 254 KEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 5555555441 11334445555555555555433
No 268
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.66 E-value=0.0016 Score=55.77 Aligned_cols=98 Identities=13% Similarity=0.063 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIE--PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE--MSLVTYSIIV 373 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l~ 373 (798)
++..++..+.+.|++++|++.|+.+.+..-. .....+..+..++.+.|++++|+..|+.+...... ....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555555566666666666665554210 01233444555555555555555555555543211 1133445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 003749 374 GGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
.++.+.|++++|+..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555555555555555555544
No 269
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.66 E-value=0.0032 Score=54.96 Aligned_cols=95 Identities=7% Similarity=-0.105 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 003749 368 TYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYT 447 (798)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 447 (798)
..-.+...+...|++++|..+|+-+...+.. +..-|..|..++-..|++++|++.|......+ +.+...+..+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3444555566677777777777777665433 66666667777777777777777777777665 345566666667777
Q ss_pred hcCCHHHHHHHHHHHHH
Q 003749 448 IIGNEEKCLIVFERLKE 464 (798)
Q Consensus 448 ~~g~~~~A~~~~~~~~~ 464 (798)
..|+.+.|++.|+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777766666554
No 270
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.65 E-value=0.002 Score=67.78 Aligned_cols=77 Identities=17% Similarity=0.127 Sum_probs=64.2
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceE-EEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKN-VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+..|||-.||..+++.++.+.|++--.|++ |.+.. .-+++-++-|||+|..++.+..|...- ..++++.|.|+|.
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~--~P~~~~~~~afv~F~~~~a~~~a~~~~--~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTR--LPTDLLRPAAFVAFIHPTAPLTASSVK--TKFYPGHRIIRVD 509 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEecc--CCcccccchhhheeccccccchhhhcc--cccccCceEEEee
Confidence 458999999999999999999998888888 55544 467888999999999988888887654 7788888899886
Q ss_pred cc
Q 003749 230 LD 231 (798)
Q Consensus 230 ~~ 231 (798)
-.
T Consensus 510 si 511 (944)
T KOG4307|consen 510 SI 511 (944)
T ss_pred ch
Confidence 43
No 271
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=97.65 E-value=0.0012 Score=65.02 Aligned_cols=8 Identities=25% Similarity=0.464 Sum_probs=3.2
Q ss_pred ceeeeeec
Q 003749 223 GRVLTVKL 230 (798)
Q Consensus 223 g~~~~v~~ 230 (798)
.|+|-|++
T Consensus 494 sRRiavey 501 (518)
T KOG1830|consen 494 SRRIAVEY 501 (518)
T ss_pred HHHHHHHh
Confidence 34444433
No 272
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.65 E-value=0.0022 Score=59.12 Aligned_cols=131 Identities=18% Similarity=0.150 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 611 VHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN--EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALL 688 (798)
Q Consensus 611 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 688 (798)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|+..+.++++.... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 34455555566666777777777766654422221 245566666666666666666666666654332 345555555
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 003749 689 KACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDM 767 (798)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~ 767 (798)
.+|...|+...+..-++.... .+++|++++++.... .|+. +..++..+...|+.
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~~~ 167 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcCcc
Confidence 566665555444433332221 256677777777653 3333 55666666666654
No 273
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.64 E-value=0.0012 Score=60.76 Aligned_cols=95 Identities=15% Similarity=0.066 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLEL--DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILID 724 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 724 (798)
..|..++..+...|++++|+..|++++.....+ ...++..+..+|...|++++|+..+++..... +.....+..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 445555566666677777777777766543222 12456666677777777777777777766543 334445555555
Q ss_pred HHH-------HcCCHHHHHHHHHHH
Q 003749 725 GWA-------RRGDVWEAADLMQQM 742 (798)
Q Consensus 725 ~~~-------~~g~~~~A~~~~~~m 742 (798)
++. +.|++++|+..+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 555 677777555555543
No 274
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.63 E-value=8.8e-05 Score=46.86 Aligned_cols=29 Identities=38% Similarity=0.552 Sum_probs=12.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 003749 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEG 361 (798)
Q Consensus 333 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 361 (798)
+|+.+|.+|++.|+++.|+++|++|.+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34444444444444444444444444433
No 275
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.00068 Score=64.84 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=70.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH
Q 003749 620 GLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQS 699 (798)
Q Consensus 620 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 699 (798)
-+.+.++|.+|+..|.+.++.. +-|.+-|..-..+|.++|.++.|++-.+..+..+.. ...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 3567778888888888887764 456667777777888888888888888777776533 46678888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHH
Q 003749 700 ALAVTKEMSAQKIPRNTFVY 719 (798)
Q Consensus 700 A~~~~~~~~~~~~~~~~~~~ 719 (798)
|.+.|++.++.. |+-.+|
T Consensus 168 A~~aykKaLeld--P~Ne~~ 185 (304)
T KOG0553|consen 168 AIEAYKKALELD--PDNESY 185 (304)
T ss_pred HHHHHHhhhccC--CCcHHH
Confidence 888888877754 554444
No 276
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.62 E-value=0.002 Score=59.14 Aligned_cols=95 Identities=15% Similarity=0.129 Sum_probs=67.9
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEP--TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (798)
...|..+...+...|++++|+..|++.......+ ...++..+..+|...|++++|+..+++..+.. +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3456777788888899999999999988763222 23478888888999999999999998888753 33456666777
Q ss_pred HHHH-------hcCCHHHHHHHHHH
Q 003749 374 GGFA-------KMGNAEAADHWFEE 391 (798)
Q Consensus 374 ~~~~-------~~g~~~~A~~~~~~ 391 (798)
..|. +.|++++|+..|++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 7776 56666655444443
No 277
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.62 E-value=0.0016 Score=67.72 Aligned_cols=92 Identities=13% Similarity=0.026 Sum_probs=69.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (798)
.+.+...|++++|+++|+++++.. ..+...|..+..+|.+.|++++|+..++++++.. +.+...|..++.+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 455667788888888888888764 4466677777778888888888888888887764 23566777777888888888
Q ss_pred HHHHHHHHHHHhcC
Q 003749 383 EAADHWFEEAKERH 396 (798)
Q Consensus 383 ~~A~~~~~~~~~~~ 396 (798)
++|+..|+++++.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888877764
No 278
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.61 E-value=6.2e-05 Score=46.36 Aligned_cols=30 Identities=33% Similarity=0.735 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003749 718 VYNILIDGWARRGDVWEAADLMQQMKQEGV 747 (798)
Q Consensus 718 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 747 (798)
+|++|+++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677888888888888888888888877664
No 279
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.61 E-value=0.00013 Score=57.86 Aligned_cols=81 Identities=14% Similarity=0.038 Sum_probs=45.0
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 003749 344 GRDMEEALSCVRKMKEEGIE-MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEA 422 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (798)
.|++++|+.+|+++.+.... ++...+..++.+|.+.|++++|+.++++ ...+. .+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777777665321 1334455567777777777777777766 22211 123344444566666666666666
Q ss_pred HHHH
Q 003749 423 LVRD 426 (798)
Q Consensus 423 ~~~~ 426 (798)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 280
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.60 E-value=0.00012 Score=73.65 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=62.0
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
.-|=+.+||+.+|++||.++|+.+ .|+++.+.+ .+|++.|=|||||.+.+++.+|++. +...+..|-|.|--+
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r---~~Gr~sGeA~Ve~~seedv~~Alkk---dR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR---RNGRPSGEAYVEFTSEEDVEKALKK---DRESMGHRYIEVFTA 83 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcC-ceeEEEEec---cCCCcCcceEEEeechHHHHHHHHh---hHHHhCCceEEEEcc
Confidence 355667999999999999999999 578877764 5899999999999999999999975 677788888887544
No 281
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.59 E-value=0.011 Score=64.36 Aligned_cols=134 Identities=11% Similarity=0.053 Sum_probs=73.7
Q ss_pred CCCHhhHHHHHHHHHH--cC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC--------ChHHHHHHHHHHH
Q 003749 293 KPSRREFGLMVNYYAR--RG---DMHRARQTFENMRARGIEPTL-HVYTNLIHAYAVGR--------DMEEALSCVRKMK 358 (798)
Q Consensus 293 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g--------~~~~A~~~~~~m~ 358 (798)
..|...|...+++... .+ +...|+.+|+++++. .|+- ..|..+..+|.... ++..+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4466667666665433 22 266788888888877 3443 33443333332211 1223333333322
Q ss_pred Hc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 359 EE-GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 359 ~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 430 (798)
.. ....+..+|..+...+...|++++|...|++++..+ ++...|..+..+|...|+.++|.+.+++....
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 21 122244556666555556677777777777766654 35566666666666677777777777666664
No 282
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.59 E-value=0.0014 Score=65.64 Aligned_cols=130 Identities=15% Similarity=0.184 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 003749 367 VTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ-TRNMERAEALVRDMEEEGIDAPIDIYHMMMDG 445 (798)
Q Consensus 367 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 445 (798)
.+|..++....+.+..+.|+.+|.++.+.+ ..+..+|...+..-.. .++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666666666666677777777666432 2233344443333222 34444566666666654 34455566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 446 YTIIGNEEKCLIVFERLKECGFSP---SIISYGCLINLYTKIGKVSKALEVSKVMKS 499 (798)
Q Consensus 446 ~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (798)
+...|+.+.|..+|++.... +.. ....|...+..=.+.|+++.+..+.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666543 211 123566666666666666666666666555
No 283
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.55 E-value=0.0032 Score=58.08 Aligned_cols=131 Identities=14% Similarity=0.075 Sum_probs=91.4
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT--LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSII 372 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 372 (798)
....|..+...|...|++++|+..|++..+....+. ...+..+..+|.+.|++++|+..+++.++.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445677888888999999999999999987632222 3578888899999999999999999988863 3356777788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 003749 373 VGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (798)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 451 (798)
..+|...|+...+..-++.... .+++|.+++++....+ | ..|..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~--p--~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLA--P--NNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhC--c--hhHHHHHHHHHhcCc
Confidence 8888888886666554444322 2566677777766643 2 224455555554443
No 284
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.51 E-value=0.00076 Score=66.20 Aligned_cols=78 Identities=17% Similarity=0.331 Sum_probs=69.5
Q ss_pred ccceeecCC-CccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 151 EGKIFVGNL-PNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 151 ~~~~~v~nl-~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+..|-|.|| .+.||.+.|-.+|+-||.|.+|+|...+ +.-|.|.+.|...|.-|+..| +|+.+.|++|+|.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk------kd~ALIQmsd~~qAqLA~~hL--~g~~l~gk~lrvt 368 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK------KDNALIQMSDGQQAQLAMEHL--EGHKLYGKKLRVT 368 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC------CcceeeeecchhHHHHHHHHh--hcceecCceEEEe
Confidence 568899999 5578999999999999999999999762 357999999999999999999 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++...+
T Consensus 369 ~SKH~~v 375 (492)
T KOG1190|consen 369 LSKHTNV 375 (492)
T ss_pred eccCccc
Confidence 9876543
No 285
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.49 E-value=0.0014 Score=62.83 Aligned_cols=100 Identities=12% Similarity=0.140 Sum_probs=84.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003749 584 HGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTG 663 (798)
Q Consensus 584 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~ 663 (798)
.-+.+.++|.+|+..|.++++.... |.+.|..-..+|.+.|.++.|++-.+..+..+ .-...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 4477899999999999999997654 78888888999999999999999988888764 334579999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 664 KAFEYFTKLRNEGLELDVFTYEAL 687 (798)
Q Consensus 664 ~A~~~~~~~~~~~~~~~~~~~~~l 687 (798)
+|++.|++.++. .|+..+|-.=
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~n 188 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSN 188 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHH
Confidence 999999999986 4555555433
No 286
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.49 E-value=0.00021 Score=67.87 Aligned_cols=81 Identities=22% Similarity=0.434 Sum_probs=63.1
Q ss_pred ccceeecCCCccCchHHH------HHHhcccCcceEEEEecCCCCCCCCcc-e-EEEEeCChhHHHHHHHhcccCCeeec
Q 003749 151 EGKIFVGNLPNWIKKHLV------MEFFRQFGPIKNVILIKGYNNFEKNVG-F-GFVIYDGPAAEKSAMKAVEFDGVEFH 222 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l------~~~f~~~g~v~~~~~~~~~~~~~~~~g-~-~fv~f~~~~~a~~a~~~~~~~~~~~~ 222 (798)
..-+||-+|++.+..++. .++|.+||.|+.|.|.+.-.......+ + .||+|.+.++|.++|... +|..++
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~v--Dgs~~D 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEV--DGSLLD 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHh--cccccc
Confidence 346899999998888862 579999999999888763111111123 2 399999999999999999 999999
Q ss_pred ceeeeeecccc
Q 003749 223 GRVLTVKLDDG 233 (798)
Q Consensus 223 g~~~~v~~~~~ 233 (798)
||.|+..+...
T Consensus 192 Gr~lkatYGTT 202 (480)
T COG5175 192 GRVLKATYGTT 202 (480)
T ss_pred CceEeeecCch
Confidence 99999876543
No 287
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.48 E-value=0.00013 Score=44.82 Aligned_cols=26 Identities=38% Similarity=0.609 Sum_probs=10.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHH
Q 003749 334 YTNLIHAYAVGRDMEEALSCVRKMKE 359 (798)
Q Consensus 334 ~~~ll~~~~~~g~~~~A~~~~~~m~~ 359 (798)
||.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444433
No 288
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.46 E-value=0.002 Score=51.95 Aligned_cols=76 Identities=14% Similarity=0.285 Sum_probs=45.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 688 LKACCKSGRMQSALAVTKEMSAQKI-PRNTFVYNILIDGWARR--------GDVWEAADLMQQMKQEGVQPDVHTYTSFI 758 (798)
Q Consensus 688 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~g~~pd~~~~~~l~ 758 (798)
|..|...+++.....+++.+++.++ -|+..+|+.++.+.++. +++-+++.+++.|+..+++|+..||+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444555555555555555555 55555555555554432 12345667777777777888888888777
Q ss_pred HHHHH
Q 003749 759 NACSK 763 (798)
Q Consensus 759 ~~~~~ 763 (798)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 77655
No 289
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.13 Score=55.69 Aligned_cols=88 Identities=14% Similarity=0.035 Sum_probs=47.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003749 336 NLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN--AEAADHWFEEAKERHATLNAIIYGNIIYAQCQ 413 (798)
Q Consensus 336 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 413 (798)
.+|.-++..+.|..|+++...+...-.. +..+|.....-+.+..+ -+++++..++=+... ......|..+......
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHHh
Confidence 3455566667777777776655432111 14555566665655532 122333332222221 1355667777777777
Q ss_pred cCChHHHHHHHH
Q 003749 414 TRNMERAEALVR 425 (798)
Q Consensus 414 ~g~~~~A~~~~~ 425 (798)
.|+++.|..+++
T Consensus 520 ~GR~~LA~kLle 531 (829)
T KOG2280|consen 520 EGRFELARKLLE 531 (829)
T ss_pred cCcHHHHHHHHh
Confidence 777777776664
No 290
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.42 E-value=0.052 Score=48.16 Aligned_cols=97 Identities=14% Similarity=0.091 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHH
Q 003749 368 TYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGI-DAPIDIYHMMMDGY 446 (798)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~ 446 (798)
-...|...+.+.|++.||...|++...--..-|......+.++....+++.+|...++++-+.+. ..+.+....+...|
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 33344444444444444444444443322223344444444444444444444444444444321 01122333344455
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 003749 447 TIIGNEEKCLIVFERLKE 464 (798)
Q Consensus 447 ~~~g~~~~A~~~~~~~~~ 464 (798)
...|+..+|...|+....
T Consensus 171 aa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 171 AAQGKYADAESAFEVAIS 188 (251)
T ss_pred HhcCCchhHHHHHHHHHH
Confidence 555555555555555444
No 291
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.42 E-value=0.18 Score=51.07 Aligned_cols=112 Identities=15% Similarity=0.218 Sum_probs=87.6
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003749 576 SRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHG 655 (798)
Q Consensus 576 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 655 (798)
..+.+..|.-+...|+...|.++-.+.. .|+...|...+.+|+..++|++-.++... +-...-|..++.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHH
Confidence 4456666777888899988888866552 36899999999999999999988776432 2234778999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003749 656 YASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEM 707 (798)
Q Consensus 656 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (798)
|.+.|+..+|..++.++ .+..-+..|.++|++.+|.+..-+.
T Consensus 247 ~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999999988872 2256678899999999998776443
No 292
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.41 E-value=0.016 Score=54.94 Aligned_cols=56 Identities=18% Similarity=0.114 Sum_probs=24.8
Q ss_pred HHHccCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003749 340 AYAVGRDMEEALSCVRKMKEEG--IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 340 ~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
.+...|++.+|++.|+++...- .+.-......++.++.+.|++++|+..|++.++.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344455555555555554431 0111233444445555555555555555555544
No 293
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.40 E-value=0.02 Score=50.71 Aligned_cols=129 Identities=14% Similarity=0.028 Sum_probs=76.3
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE-MSLVTYSIIV 373 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l~ 373 (798)
.......|.+++.+.|++.+|...|++...--+.-|......+..+....+++.+|...++.+-+.... .+..+...+.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 444455667777777777777777777766545556666666666677777777777777776664311 1234455666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 003749 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVR 425 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 425 (798)
+.|.-.|++..|...|+.....- |+...-......+.++|+.+++..-+.
T Consensus 168 R~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 66777777777777777766542 232222222334455565555544333
No 294
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.36 E-value=0.00011 Score=72.24 Aligned_cols=82 Identities=26% Similarity=0.366 Sum_probs=72.6
Q ss_pred ccee-ecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 152 GKIF-VGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 152 ~~~~-v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++| |+|++..+++++|+.+|..+|.|..+++..+ ..+|..+||+||+|.+......++.. +...+.|+++.+..
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~-~~s~~~kg~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTD-EESGDSKGFAYVDFSAGNSKKLALND---QTRSIGGRPLRLEE 260 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCC-CCccchhhhhhhhhhhchhHHHHhhc---ccCcccCccccccc
Confidence 3555 9999999999999999999999999999988 88999999999999999988888752 57889999999999
Q ss_pred ccccchh
Q 003749 231 DDGRRLK 237 (798)
Q Consensus 231 ~~~~~~~ 237 (798)
.+++...
T Consensus 261 ~~~~~~~ 267 (285)
T KOG4210|consen 261 DEPRPKS 267 (285)
T ss_pred CCCCccc
Confidence 8877544
No 295
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.054 Score=59.28 Aligned_cols=139 Identities=12% Similarity=0.196 Sum_probs=66.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003749 306 YARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAA 385 (798)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A 385 (798)
+.+.|++++|...|-+-+.. +.| ..+|.-|....++.+-...++.+.+.|+. +..--+.|+.+|.+.++.++-
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHH
Confidence 33556666666555444432 111 13444445555555555566666666544 334445566666666666665
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 386 DHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL 462 (798)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (798)
.++.+... .|.- ..-....+.++.+.+-.++|..+-.+... +..+. .-.+-..+++++|++++..+
T Consensus 451 ~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl---~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 451 TEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVL---DILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHH---HHHHHHhcCHHHHHHHHhcC
Confidence 55544432 1110 11133344555555555555554443322 12222 22233455666666665544
No 296
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.31 E-value=0.032 Score=52.86 Aligned_cols=64 Identities=20% Similarity=0.135 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGI--EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE 360 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 360 (798)
..+......+.+.|++.+|++.|+.+...-. .-.......++.++.+.|++++|...|++.++.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344556678899999999999999998621 122335677888999999999999999999876
No 297
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.31 E-value=0.013 Score=49.41 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=51.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHH
Q 003749 302 MVNYYARRGDMHRARQTFENMRARGIEPT--LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE--MSLVTYSIIVGGFA 377 (798)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l~~~~~ 377 (798)
+..++-..|+.++|+.+|++....|.... ...+-.+...|...|++++|+.+|++....-.. .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455566777777777777777654432 123444556666667777777777666654111 02222333344555
Q ss_pred hcCCHHHHHHHHHHHH
Q 003749 378 KMGNAEAADHWFEEAK 393 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~ 393 (798)
..|+.++|++++-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6666666666665544
No 298
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.30 E-value=0.00013 Score=67.01 Aligned_cols=70 Identities=26% Similarity=0.412 Sum_probs=62.4
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
...++++|-|++.++...+|.+.|.++|.+...... .+++||+|++.+++.+|+..+ ++..+.|+.|.+
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~---------~~~~~v~Fs~~~da~ra~~~l--~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR---------RNFAFVEFSEQEDAKRALEKL--DGKKLNGRRISV 165 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhhh---------ccccceeehhhhhhhhcchhc--cchhhcCceeee
Confidence 345689999999999999999999999999555441 689999999999999999999 999999999998
Q ss_pred e
Q 003749 229 K 229 (798)
Q Consensus 229 ~ 229 (798)
.
T Consensus 166 ~ 166 (216)
T KOG0106|consen 166 E 166 (216)
T ss_pred c
Confidence 4
No 299
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.082 Score=57.94 Aligned_cols=51 Identities=2% Similarity=0.120 Sum_probs=28.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003749 687 LLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQ 741 (798)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (798)
++..+.+..+.+.+..+.+..-+ -+...|-.+++.+++.+..++-.+...+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~----~~p~l~~~~L~yF~~~~~i~~~~~~v~~ 761 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGK----EDPSLWLHALKYFVSEESIEDCYEIVYK 761 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCc----cChHHHHHHHHHHhhhcchhhHHHHHHH
Confidence 44445555566666655554443 2666777777777776654444443333
No 300
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.014 Score=56.48 Aligned_cols=127 Identities=19% Similarity=0.152 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChHHHHHHH
Q 003749 628 EKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG---RMQSALAVT 704 (798)
Q Consensus 628 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~ 704 (798)
+....-++.-+..+ +-|...|..|..+|...|+.+.|...|.+..+...+ +...+..+..++.... .-.++..+|
T Consensus 139 ~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 139 EALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 33333444434443 567889999999999999999999999999887533 6777777777765544 356888999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 705 KEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFIN 759 (798)
Q Consensus 705 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~ 759 (798)
++++..+ +-|+.....|...++..|++.+|...|+.|.+. .|....+..+|.
T Consensus 217 ~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 217 RQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 9999877 678888888889999999999999999999885 333344455543
No 301
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.29 E-value=0.015 Score=63.20 Aligned_cols=63 Identities=19% Similarity=0.132 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 680 DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
+...|..+.-.+...|++++|...++++.+.+ ++...|..++.++...|+.++|.+.+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44566666555666677777777777777665 4666777777777777777777777777665
No 302
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.014 Score=56.48 Aligned_cols=99 Identities=12% Similarity=0.078 Sum_probs=71.0
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVG---RDMEEALSCVRKMKEEGIEMSLVTYSI 371 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~ 371 (798)
|...|-.|..+|...|++..|...|.+..+.. ..|...+..+..++... .+-.++..+|+++++.+. -|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHHH
Confidence 66778888888888888888888888888763 44566655555554433 234677788888877653 26777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 003749 372 IVGGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
|...+...|++.+|...++.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 777788888888888888888775
No 303
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.23 E-value=0.075 Score=56.24 Aligned_cols=54 Identities=9% Similarity=0.111 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 003749 507 KTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQK 569 (798)
Q Consensus 507 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 569 (798)
.+...+...+.+...+.-|-++|.+|-. ...++.+....+++.+|+.+-+...+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 3444444444455566666666666532 13456666677777777776665544
No 304
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.21 E-value=0.00017 Score=66.22 Aligned_cols=74 Identities=19% Similarity=0.382 Sum_probs=62.8
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCC--------CCCcc----eEEEEeCChhHHHHHHHhccc
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNF--------EKNVG----FGFVIYDGPAAEKSAMKAVEF 216 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~--------~~~~g----~~fv~f~~~~~a~~a~~~~~~ 216 (798)
+..+.||++|+|+.++...|+++|+.||.|-.|.+... ..+ |..++ =|.|+|.+...|.++...|
T Consensus 72 rk~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE-~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~L-- 148 (278)
T KOG3152|consen 72 RKTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPE-DDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELL-- 148 (278)
T ss_pred ccceEEEeccCCCccCHHHHHHHHHhccccceEEecch-hhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHh--
Confidence 35679999999999999999999999999999998875 333 33332 3679999999999999988
Q ss_pred CCeeeccee
Q 003749 217 DGVEFHGRV 225 (798)
Q Consensus 217 ~~~~~~g~~ 225 (798)
|+..|+|+.
T Consensus 149 nn~~Iggkk 157 (278)
T KOG3152|consen 149 NNTPIGGKK 157 (278)
T ss_pred CCCccCCCC
Confidence 999999976
No 305
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.21 E-value=0.022 Score=48.00 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=7.5
Q ss_pred HHHhcCCHHHHHHHHHH
Q 003749 445 GYTIIGNEEKCLIVFER 461 (798)
Q Consensus 445 ~~~~~g~~~~A~~~~~~ 461 (798)
++...|+.++|+.++-.
T Consensus 84 ~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 33444444444444443
No 306
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.20 E-value=0.023 Score=59.82 Aligned_cols=78 Identities=23% Similarity=0.187 Sum_probs=39.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----------HHHHHHHH
Q 003749 621 LVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDV-----------FTYEALLK 689 (798)
Q Consensus 621 ~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------~~~~~l~~ 689 (798)
+.+...+.-|.++|.+|-+ ...+++.....+++.+|+.+-++.-+. .+|+ .-|...-.
T Consensus 757 lk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred HhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHH
Confidence 3344455555556655432 123445555666666666555544332 1111 12233334
Q ss_pred HHHHcCChHHHHHHHHHHHh
Q 003749 690 ACCKSGRMQSALAVTKEMSA 709 (798)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~ 709 (798)
+|.++|+-.+|..+++++..
T Consensus 826 AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 826 AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHhcchHHHHHHHHHhhh
Confidence 56666777777777766654
No 307
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.18 E-value=0.0075 Score=55.30 Aligned_cols=115 Identities=13% Similarity=0.190 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003749 610 TVHTFNALILGLVE-----KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTY 684 (798)
Q Consensus 610 ~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 684 (798)
+..+|..+|..|.+ .|.++=....+..|.+-|+..|..+|+.|++.+=+ |.+- |.. .+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-~f 108 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-FF 108 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-HH
Confidence 55566666655543 24444455555555566666666666666555443 2211 000 01
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 003749 685 EALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGD-VWEAADLMQQMK 743 (798)
Q Consensus 685 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~ 743 (798)
.++..-| -.+-+-|++++++|...|+-||.+++..|++.|.+.+. ..+..+++-.|.
T Consensus 109 Q~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 109 QAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1111111 11235688999999999999999999999999987765 333444444443
No 308
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.14 E-value=0.008 Score=55.13 Aligned_cols=87 Identities=22% Similarity=0.411 Sum_probs=59.6
Q ss_pred CHhhHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----------------CChHHHHHH
Q 003749 295 SRREFGLMVNYYAR-----RGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVG----------------RDMEEALSC 353 (798)
Q Consensus 295 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------------g~~~~A~~~ 353 (798)
+-.+|..+|..|.+ .|..+-....+..|.+.|+.-|..+|+.||.++=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 55666666666654 466777777888999999999999999999987542 122345666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003749 354 VRKMKEEGIEMSLVTYSIIVGGFAKMGN 381 (798)
Q Consensus 354 ~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 381 (798)
+++|...|+-||.+|+..|++.+.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 6666666666666666666666654443
No 309
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.14 E-value=0.0021 Score=48.66 Aligned_cols=59 Identities=29% Similarity=0.281 Sum_probs=22.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 003749 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG-NAEAADHWFEEA 392 (798)
Q Consensus 333 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 392 (798)
+|..+...+...|++++|+..|++.++.+ +-+...|..+..+|.+.| ++++|++.|++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 33333334444444444444444443332 112333333334444443 344444444333
No 310
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.14 E-value=0.0017 Score=68.16 Aligned_cols=79 Identities=22% Similarity=0.365 Sum_probs=66.5
Q ss_pred cccc-ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 149 RQEG-KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 149 ~~~~-~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
+.++ .|-+.|+|++++-+||.++|..|-.+-+-.+++. ...|+..|=|-|.|++.+.|.+|...+ ++..|..|.++
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~-nd~G~pTGe~mvAfes~~eAr~A~~dl--~~~~i~nr~V~ 940 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRR-NDDGVPTGECMVAFESQEEARRASMDL--DGQKIRNRVVS 940 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEee-cCCCCcccceeEeecCHHHHHhhhhcc--ccCcccceeEE
Confidence 4444 6788999999999999999999976654333333 578999999999999999999999988 99999999988
Q ss_pred eec
Q 003749 228 VKL 230 (798)
Q Consensus 228 v~~ 230 (798)
+.+
T Consensus 941 l~i 943 (944)
T KOG4307|consen 941 LRI 943 (944)
T ss_pred EEe
Confidence 753
No 311
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.13 E-value=0.0018 Score=48.94 Aligned_cols=65 Identities=22% Similarity=0.147 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHc
Q 003749 365 SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTR-NMERAEALVRDMEEE 430 (798)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 430 (798)
+..+|..++..+.+.|++++|+..|++.++.+.. +..+|..+..+|.+.| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4566777777777777777777777777776433 5666777777777777 577777777666553
No 312
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.13 E-value=0.35 Score=48.40 Aligned_cols=118 Identities=10% Similarity=0.042 Sum_probs=56.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 003749 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG--FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAE 421 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 421 (798)
.|+-..|.++-.+..+. +..|..-...|+.+ -.-.|++++|.+-|+.|... .+.-..-...|....-+.|..+.|.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHH
Confidence 35555555555444322 22233333333332 22346666666666666542 1111111222222333556666666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 422 ALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKE 464 (798)
Q Consensus 422 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (798)
+.-++.-+.- +--...+..++...+..|+++.|+++.+.-++
T Consensus 175 ~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 175 HYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 5555555432 22245566666666666666666666665544
No 313
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.08 E-value=0.0024 Score=47.55 Aligned_cols=57 Identities=21% Similarity=0.220 Sum_probs=39.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 687 LLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
+...+.+.|++++|...|+++++.. +.+...+..++.++...|++++|+.+|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456667777777777777777665 44666777777777777777777777777765
No 314
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.75 Score=50.22 Aligned_cols=97 Identities=11% Similarity=0.043 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 680 DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFIN 759 (798)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~ 759 (798)
...+.+--+.-+...|.-.+|.++-.+.. -||...|..-+.+++..+++++..++-+.++. +.-|.-++.
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHH
Confidence 33445555666778888888888877665 37888888888999999998888887776652 223455888
Q ss_pred HHHHcCCccccccccccchhhhhhhhh
Q 003749 760 ACSKAGDMQVRFSIPMLTKFYLFSFIW 786 (798)
Q Consensus 760 ~~~~~g~~~~a~~~~~~~~~~~~~~~w 786 (798)
+|.+.|+.+||.........+.+...|
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l~ekv~a 779 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGLQEKVKA 779 (829)
T ss_pred HHHhcccHHHHhhhhhccCChHHHHHH
Confidence 999999999999888887777755555
No 315
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.01 E-value=0.0028 Score=47.25 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=23.9
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003749 340 AYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKE 394 (798)
Q Consensus 340 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (798)
.+.+.|++++|+.+|+++++.. +-+...+..+..++.+.|++++|+.+|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444444432 22344444444444444444444444444443
No 316
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.96 E-value=0.00038 Score=68.23 Aligned_cols=78 Identities=13% Similarity=0.239 Sum_probs=61.8
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+++.+.++|||++++|++|-.++..||.|..+.+.+. +..+|++|.|.++|..-+.....-.-.+.|++|.|+
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG-------knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG-------KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeecc-------chhhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 4568999999999999999999999999999999886 569999999999887744333111223778888888
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
++-.+
T Consensus 100 ~sn~~ 104 (492)
T KOG1190|consen 100 YSNHS 104 (492)
T ss_pred hhhHH
Confidence 75433
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.86 Score=50.03 Aligned_cols=103 Identities=14% Similarity=0.145 Sum_probs=70.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 302 MVNYYARRGDMHRARQTFENMRARGIEP---TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (798)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (798)
=|+++.+.+.+++|+.+.+..... .+ -...+...|..|.-.|++++|-.+.-.|... +..-|...+..+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 367888899999999887766543 33 3457888899999999999999999888754 66777777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003749 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ 413 (798)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 413 (798)
.++...... -+.......+..+|..++..+..
T Consensus 436 ~~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 436 LDQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 766554332 22222222445566666555554
No 318
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.96 E-value=0.0035 Score=47.23 Aligned_cols=51 Identities=20% Similarity=0.359 Sum_probs=26.6
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 693 KSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 693 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
+.|++++|+.+|+++.... +.+...+..++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555555443 33445555555555555555555555555554
No 319
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=96.93 E-value=0.0035 Score=67.20 Aligned_cols=9 Identities=44% Similarity=0.413 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 003749 265 WHRREFRKA 273 (798)
Q Consensus 265 ~a~~~f~~~ 273 (798)
++.+.|+..
T Consensus 441 e~~R~~nla 449 (830)
T KOG1923|consen 441 EQRRLFNLA 449 (830)
T ss_pred HHHHHHHHH
Confidence 334444333
No 320
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.91 E-value=0.0032 Score=47.44 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=24.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 003749 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE 360 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 360 (798)
+.|++++|+++|+.+.... +.+..++..+..+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555555554442 224444444555555555555555555554443
No 321
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.90 E-value=0.15 Score=52.18 Aligned_cols=178 Identities=12% Similarity=0.020 Sum_probs=100.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHc---cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARG---IEPTLHVYTNLIHAYAV---GRDMEEALSCVRKMKEEGIEMSLVTYS 370 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~ 370 (798)
.+...|+-.|-...+|+.-+++.+.|...- +..+..+-....-++-+ .|+.++|++++..+....-..+..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334455556778888999999988888751 11122222333344555 788999999988865555566888888
Q ss_pred HHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 003749 371 IIVGGFAKM---------GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHM 441 (798)
Q Consensus 371 ~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 441 (798)
.++..|... ...++|+..|.+.-+.. +|.+.-.+++..+.-.|.-.+...-++++. ..++
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~--------~~l~- 290 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIG--------VKLS- 290 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHH--------HHHH-
Confidence 888877542 23667777777776653 344443333333333333221111111111 0000
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003749 442 MMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (798)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (798)
....+.|.. +-..|-..+.+++.++.-.|+.++|.+..++|.+.
T Consensus 291 --~llg~kg~~-------------~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 291 --SLLGRKGSL-------------EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred --HHHHhhccc-------------cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 111111111 11235556667777788888888888888888765
No 322
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.87 E-value=0.02 Score=56.25 Aligned_cols=95 Identities=11% Similarity=0.027 Sum_probs=42.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCChhhHHHHH
Q 003749 334 YTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS---LVTYSIIVGGFAKMGNAEAADHWFEEAKERHA--TLNAIIYGNII 408 (798)
Q Consensus 334 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~ 408 (798)
|...+..+.+.|++++|+..|+.+++.- +-+ ...+..++.+|...|++++|+..|+.+..... .....++..++
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3333333344455555555555555531 111 13444555555555555555555555544311 11223333344
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 003749 409 YAQCQTRNMERAEALVRDMEE 429 (798)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~ 429 (798)
.++.+.|+.++|.++|+++++
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 444444555555555544444
No 323
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.87 E-value=0.87 Score=48.66 Aligned_cols=396 Identities=12% Similarity=0.077 Sum_probs=210.9
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
+-++.+|+.++...|-+. -.|......=.+.|..+.+.++|++.++. ++-++..|...+..+..
T Consensus 62 ~~~r~~y~~fL~kyPl~~---------------gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n 125 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCY---------------GYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKN 125 (577)
T ss_pred HHHHHHHHHHHhhCccHH---------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhc
Confidence 445666666666665321 01222333334678899999999999874 67788888877766654
Q ss_pred -cCChHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH---Hhc---
Q 003749 344 -GRDMEEALSCVRKMKEE-GIE-MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ---CQT--- 414 (798)
Q Consensus 344 -~g~~~~A~~~~~~m~~~-g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~--- 414 (798)
.|+.+...++|+..... |.. .+...|-..|..-..++++.....+|+++++.- ..-++.....| .+.
T Consensus 126 ~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~ 201 (577)
T KOG1258|consen 126 NNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEE 201 (577)
T ss_pred cCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCCh
Confidence 57888888899888764 322 245678888888888999999999999998751 12222221111 111
Q ss_pred ---CChHHHHHHHHHHHHc-CC---CCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC
Q 003749 415 ---RNMERAEALVRDMEEE-GI---DAPIDIYHMMMDG-YTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGK 486 (798)
Q Consensus 415 ---g~~~~A~~~~~~m~~~-~~---~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 486 (798)
-..+++.++-.....+ .. ......+..-+.- -...+..+++.....+.. ...-.++-..-.
T Consensus 202 ~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~s~~ 270 (577)
T KOG1258|consen 202 KILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQKSEE 270 (577)
T ss_pred hhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHhhHh
Confidence 1223333332222211 00 0000000000000 000111111111111111 111122222233
Q ss_pred HHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 003749 487 VSKALEVSKVMKSSG-------IKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDR 559 (798)
Q Consensus 487 ~~~A~~~~~~m~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 559 (798)
..+....|+.-++.- ...+..+|..-++.-.+.|+++.+.-+|+...-- +..-...|-..+.-....|+.+-
T Consensus 271 ~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~ 349 (577)
T KOG1258|consen 271 EEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSL 349 (577)
T ss_pred HHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhH
Confidence 333333444433321 1234567888888888899999999888887542 11223455555555556688888
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHH---HH
Q 003749 560 AIHIVKEMQKERHRPTSRTFMPIIHG-FARAGEMKRALEIFDMMRRSGCIPTVH-TFNALILGLVEKRQMEKAIE---IL 634 (798)
Q Consensus 560 A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~A~~---~~ 634 (798)
|..++....+...+ +......+-.. .-..|+++.|..+++.+...- |+.. .-..-+....+.|..+.+.. ++
T Consensus 350 ~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~ 426 (577)
T KOG1258|consen 350 ANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELY 426 (577)
T ss_pred HHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHH
Confidence 87777666554433 22222222223 334679999999999887653 3322 22223445567777777763 33
Q ss_pred HHHHHCCCCCC--HHHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003749 635 DEMTLAGISPN--EHTYTTIMH-GYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG 695 (798)
Q Consensus 635 ~~m~~~~~~p~--~~t~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 695 (798)
........... ...+....+ .+.-.++.+.|..++.++.+.- ..+...|..++..+...+
T Consensus 427 s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 427 SSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 32222111111 111111111 2233567888888888888763 346777777777766655
No 324
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.86 E-value=0.019 Score=56.34 Aligned_cols=97 Identities=8% Similarity=0.039 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCCHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTL----HVYTNLIHAYAVGRDMEEALSCVRKMKEEG--IEMSLVTYSI 371 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ 371 (798)
.|...+..+...|++++|+..|+.+++. .|+. .++..+..+|...|++++|+..|+.+++.- .......+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4555555556789999999999999997 3443 577888899999999999999999998752 1223566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC
Q 003749 372 IVGGFAKMGNAEAADHWFEEAKERH 396 (798)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (798)
++..|.+.|+.++|..+|+++++..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 7888999999999999999998763
No 325
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.83 E-value=0.018 Score=55.46 Aligned_cols=12 Identities=0% Similarity=0.147 Sum_probs=5.3
Q ss_pred CchHHHHHHhcc
Q 003749 163 IKKHLVMEFFRQ 174 (798)
Q Consensus 163 ~~~~~l~~~f~~ 174 (798)
++|.+.+++..+
T Consensus 357 lSeAEFEdiM~R 368 (498)
T KOG4849|consen 357 LSEAEFEDIMTR 368 (498)
T ss_pred chHHHHHHHHhh
Confidence 444444444433
No 326
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.80 E-value=1.1 Score=48.72 Aligned_cols=163 Identities=17% Similarity=0.171 Sum_probs=98.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003749 579 FMPIIHGFARAGEMKRALEIFDMMRRSGCIPTV------HTFNALILGLV----EKRQMEKAIEILDEMTLAGISPNEHT 648 (798)
Q Consensus 579 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~li~~~~----~~~~~~~A~~~~~~m~~~~~~p~~~t 648 (798)
+..++....=.|+-+.+++++.+..+.+-.-.. ..|..++..++ .....+.|.++++.+... .|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 334444445556666666666655443211111 12333333322 245677888888888875 566665
Q ss_pred HHHH-HHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003749 649 YTTI-MHGYASLGDTGKAFEYFTKLRNEG---LELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILID 724 (798)
Q Consensus 649 ~~~l-i~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 724 (798)
|... .+.+...|+.++|++.|++..+.. .......+--+..++.-..+|++|...|.++.+.+ ..+..+|.-+.-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 5443 356667788888888888765321 12334556667777888889999999998888765 344445544433
Q ss_pred H-HHHcCCH-------HHHHHHHHHHHH
Q 003749 725 G-WARRGDV-------WEAADLMQQMKQ 744 (798)
Q Consensus 725 ~-~~~~g~~-------~~A~~~~~~m~~ 744 (798)
+ +...|+. ++|.++|++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3 3456777 788888887653
No 327
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.79 E-value=0.21 Score=41.79 Aligned_cols=140 Identities=16% Similarity=0.283 Sum_probs=84.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003749 587 ARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAF 666 (798)
Q Consensus 587 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~ 666 (798)
.-.|..++..++..+.... .+..-+|.+|.-....-+-+-..++++..-.. -|. ...|++....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHH
Confidence 3467788888888887764 35666777766555555555555555544321 111 2234444444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003749 667 EYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEG 746 (798)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 746 (798)
..+..+- .+....+..+..+.+.|+-+.-.++..++...+ .++....--+..+|.+.|+..++.+++++..+.|
T Consensus 77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 4443321 244456777788889999999889988887543 5788888899999999999999999999999988
Q ss_pred CC
Q 003749 747 VQ 748 (798)
Q Consensus 747 ~~ 748 (798)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 64
No 328
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.24 Score=46.26 Aligned_cols=86 Identities=10% Similarity=0.153 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (798)
.|..-..+|-...++++|...+.+..+. .+.+...|++ . .-++.|..+.++|.+. .--+..|+....+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-A------KayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-A------KAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-H------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3445556777778888888888777753 1333333322 1 3345666666666653 223445666777788
Q ss_pred hcCCHHHHHHHHHHHH
Q 003749 378 KMGNAEAADHWFEEAK 393 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~ 393 (798)
..|..+.|-..+++.-
T Consensus 103 E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAA 118 (308)
T ss_pred HhCCcchHHHHHHHHH
Confidence 8888777777776654
No 329
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.73 E-value=0.065 Score=57.89 Aligned_cols=116 Identities=17% Similarity=0.038 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhH-HHHHHHHHhcCChHHHHHHHHHHHHcCC---CCChhhHHHHHHHHHhcCCHHHHH
Q 003749 381 NAEAADHWFEEAKERHATLNAIIY-GNIIYAQCQTRNMERAEALVRDMEEEGI---DAPIDIYHMMMDGYTIIGNEEKCL 456 (798)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 456 (798)
..+.|.++++.+..+ -|+...| ..-.+.+...|++++|.+.|++...... ......+.-++..+...+++++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 345555555555554 2232222 2234445555555555555554432110 111233445555666666666666
Q ss_pred HHHHHHHHCCCCcCHHHHHH-HHHHHHHcCCH-------HHHHHHHHHHHH
Q 003749 457 IVFERLKECGFSPSIISYGC-LINLYTKIGKV-------SKALEVSKVMKS 499 (798)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~-------~~A~~~~~~m~~ 499 (798)
+.|.++.+..-- +...|.- ...++...|+. ++|.++|.++..
T Consensus 326 ~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 666666654211 2222222 23344555555 666666666543
No 330
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.0038 Score=63.86 Aligned_cols=66 Identities=29% Similarity=0.415 Sum_probs=50.7
Q ss_pred cccccceeecCCCccCchHHHHHHhcccCcceEEEEe-cCC-CCCCCCcc---eEEEEeCChhHHHHHHHhc
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILI-KGY-NNFEKNVG---FGFVIYDGPAAEKSAMKAV 214 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~-~~~-~~~~~~~g---~~fv~f~~~~~a~~a~~~~ 214 (798)
.+-.++||||+||++++|+.|...|..||.+. |... +.. +.---++| |+|+.|+++.+++.-+.+.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 35567999999999999999999999999985 2222 110 11112367 9999999999999999887
No 331
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.63 E-value=0.54 Score=48.19 Aligned_cols=163 Identities=12% Similarity=0.107 Sum_probs=82.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003749 581 PIIHGFARAGEMKRALEIFDMMRRSG---CIPTVHTFNALILGLVE---KRQMEKAIEILDEMTLAGISPNEHTYTTIMH 654 (798)
Q Consensus 581 ~li~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 654 (798)
.++-+|....+++..+++.+.+...- +.-...+-.....++-+ .|+.++|+.++..+......++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34444555556666666665555431 00011111122233444 5566666666665444444555555555555
Q ss_pred HHHh---------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hH---HHHHHH---H-HHHhCC---CCC
Q 003749 655 GYAS---------LGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGR-MQ---SALAVT---K-EMSAQK---IPR 714 (798)
Q Consensus 655 ~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~-~~~~~~---~~~ 714 (798)
.|-. ....++|++.|.+.-+.. +|...--.+...+...|. ++ +..++- . .+.+.+ -..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 4421 112666777777665543 332222222222333332 21 222222 1 111222 124
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003749 715 NTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (798)
Q Consensus 715 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (798)
+.+-+..++.+..-.|+.++|.+..++|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 5556678888888999999999999999875
No 332
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.62 E-value=0.0039 Score=65.05 Aligned_cols=69 Identities=22% Similarity=0.330 Sum_probs=55.0
Q ss_pred HHHHHhcccCcceEEEEecCCC--CCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecccccchh
Q 003749 167 LVMEFFRQFGPIKNVILIKGYN--NFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLK 237 (798)
Q Consensus 167 ~l~~~f~~~g~v~~~~~~~~~~--~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~~~~~~~ 237 (798)
+++.-+++||.|..|.+.++.. ...-.-|..||+|.+.+++++|.++| +|.++.||.+...+...-...
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L--~GrKF~nRtVvtsYydeDkY~ 495 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEEL--TGRKFANRTVVASYYDEDKYH 495 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHc--cCceeCCcEEEEEecCHHHhh
Confidence 4566678999999999988621 11222578899999999999999999 999999999998887655433
No 333
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.62 E-value=0.0049 Score=57.78 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=52.4
Q ss_pred HHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeeccccc
Q 003749 167 LVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGR 234 (798)
Q Consensus 167 ~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~~~~ 234 (798)
++.+...+||.|.+|.|..+....-.-.---||+|+..++|.+|+-.| ||..|+||.++-.|..--
T Consensus 302 e~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vdl--nGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 302 ETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDL--NGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhc--CCceecceeeeheeccHH
Confidence 567788999999999988762222222345799999999999999999 999999999988776433
No 334
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.61 E-value=0.012 Score=57.26 Aligned_cols=79 Identities=16% Similarity=0.252 Sum_probs=68.8
Q ss_pred cccceeecCCCc-cCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 150 QEGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 150 ~~~~~~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
+++.+.|.+|.. .+.-+.|-++|-.||.|+.|+.++. + .|-|.|++.|....++|+..| |+..+.|.+|.|
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT-k-----~gtamVemgd~~aver~v~hL--nn~~lfG~kl~v 357 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT-K-----PGTAMVEMGDAYAVERAVTHL--NNIPLFGGKLNV 357 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec-c-----cceeEEEcCcHHHHHHHHHHh--ccCccccceEEE
Confidence 445889999966 4556789999999999999999976 2 589999999999999999999 999999999999
Q ss_pred ecccccch
Q 003749 229 KLDDGRRL 236 (798)
Q Consensus 229 ~~~~~~~~ 236 (798)
++++-..+
T Consensus 358 ~~SkQ~~v 365 (494)
T KOG1456|consen 358 CVSKQNFV 365 (494)
T ss_pred eecccccc
Confidence 99876653
No 335
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.60 E-value=0.0025 Score=67.11 Aligned_cols=67 Identities=18% Similarity=0.307 Sum_probs=60.3
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++||||+...+..+-++.....||-|..++... |||++|.+.....+|+..+ +...++|..+.++..
T Consensus 42 ~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----------fgf~~f~~~~~~~ra~r~~--t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 42 TVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----------FGFCEFLKHIGDLRASRLL--TELNIDDQKLIENVD 108 (668)
T ss_pred eeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----------hcccchhhHHHHHHHHHHh--cccCCCcchhhccch
Confidence 899999999999999999999999999886652 9999999999999999988 888899988877664
No 336
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.57 E-value=0.0063 Score=58.80 Aligned_cols=82 Identities=22% Similarity=0.359 Sum_probs=64.6
Q ss_pred hcccccceeecCCCc----cCc-------hHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcc
Q 003749 147 EFRQEGKIFVGNLPN----WIK-------KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVE 215 (798)
Q Consensus 147 ~~~~~~~~~v~nl~~----~~~-------~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 215 (798)
..+..++|.+.|+=. ..+ .++|++--++||.|.+|.|.-. .+.|.+-|.|.+.+.|..||+.|
T Consensus 261 k~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~-----hPdGvvtV~f~n~eeA~~ciq~m- 334 (382)
T KOG1548|consen 261 KARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR-----HPDGVVTVSFRNNEEADQCIQTM- 334 (382)
T ss_pred cccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc-----CCCceeEEEeCChHHHHHHHHHh-
Confidence 445667888888822 222 1345566789999999988743 34799999999999999999999
Q ss_pred cCCeeecceeeeeecccccc
Q 003749 216 FDGVEFHGRVLTVKLDDGRR 235 (798)
Q Consensus 216 ~~~~~~~g~~~~v~~~~~~~ 235 (798)
+|..++||+|.-.+..++.
T Consensus 335 -~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 335 -DGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred -cCeeecceEEEEEEeCCcc
Confidence 9999999999988776654
No 337
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.55 E-value=1.2 Score=45.98 Aligned_cols=100 Identities=15% Similarity=0.126 Sum_probs=77.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003749 300 GLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (798)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (798)
......+...|+++.+.+.+...... +.....+...+++...+.|++++|+.+-+-|+...++ +.+.........-..
T Consensus 327 ~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l 404 (831)
T PRK15180 327 QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADAL 404 (831)
T ss_pred HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHH
Confidence 33345567889999999998877664 3456677888899999999999999999999877666 666666666666778
Q ss_pred CCHHHHHHHHHHHHhcCCCCCh
Q 003749 380 GNAEAADHWFEEAKERHATLNA 401 (798)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~ 401 (798)
|-++++.-.+.++...+.+.+.
T Consensus 405 ~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 405 QLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred hHHHHHHHHHHHHhccCChhcc
Confidence 8899999999988876554333
No 338
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.0049 Score=63.08 Aligned_cols=65 Identities=22% Similarity=0.280 Sum_probs=59.6
Q ss_pred ccccceeecCCCccCchHHHHHHhc-ccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhc
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFR-QFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~-~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (798)
.+.++||||+||.-++-++|-.+|. -||.|..+-|=.| ..-+.++|=|-|+|.+..+..+||.+-
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD-~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTD-PKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccC-cccCCCCCcceeeecccHHHHHHHhhh
Confidence 5678999999999999999999998 8999999999888 566888999999999999999999863
No 339
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.48 E-value=0.91 Score=43.93 Aligned_cols=124 Identities=18% Similarity=0.100 Sum_probs=55.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 003749 620 GLVEKRQMEKAIEILDEMTLAGI--SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRM 697 (798)
Q Consensus 620 ~~~~~~~~~~A~~~~~~m~~~~~--~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 697 (798)
.+...|+++.|...+.+...... ......+......+...++.+.+...+.++...........+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 34444555555555554433110 0122222223333444555555555555555432211234455555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 698 QSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 698 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
+.|...+....... +.....+..+...+...|+.+++...+.+...
T Consensus 219 ~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555432 11123333333444444455556555555554
No 340
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.47 E-value=0.011 Score=50.45 Aligned_cols=75 Identities=17% Similarity=0.336 Sum_probs=51.2
Q ss_pred cccccceeecCCC------ccCchH---HHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCC
Q 003749 148 FRQEGKIFVGNLP------NWIKKH---LVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG 218 (798)
Q Consensus 148 ~~~~~~~~v~nl~------~~~~~~---~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 218 (798)
+++..+|-|.=+. ...+++ +|-+.|+.||.+.-+|++.+ .-.|+|.+-.+|.+|+. + +|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~---------~mwVTF~dg~sALaals-~--dg 91 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD---------TMWVTFRDGQSALAALS-L--DG 91 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT---------CEEEEESSCHHHHHHHH-G--CC
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC---------eEEEEECccHHHHHHHc-c--CC
Confidence 3455567666454 123332 56778899999998888754 67899999999999986 3 89
Q ss_pred eeecceeeeeeccccc
Q 003749 219 VEFHGRVLTVKLDDGR 234 (798)
Q Consensus 219 ~~~~g~~~~v~~~~~~ 234 (798)
..+.|+.|+|++..+.
T Consensus 92 ~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 92 IQVNGRTLKIRLKTPD 107 (146)
T ss_dssp SEETTEEEEEEE----
T ss_pred cEECCEEEEEEeCCcc
Confidence 9999999999876443
No 341
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.46 E-value=0.0059 Score=62.04 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=60.8
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceE-EEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKN-VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
..|=+.+||+.+|++||.++|+.---|.. +.++.| ..|++.|=|||.|++.+.|++|+.. |...|..|-|.|-.
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d--~rgR~tGEAfVqF~sqe~ae~Al~r---hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD--QRGRPTGEAFVQFESQESAEIALGR---HRENIGHRYIEVFR 178 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCcccccceeeecc--CCCCcccceEEEecCHHHHHHHHHH---HHHhhccceEEeeh
Confidence 36677899999999999999997654444 455665 4477899999999999999999976 57888888888754
Q ss_pred c
Q 003749 231 D 231 (798)
Q Consensus 231 ~ 231 (798)
+
T Consensus 179 S 179 (510)
T KOG4211|consen 179 S 179 (510)
T ss_pred h
Confidence 4
No 342
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.46 E-value=0.002 Score=63.89 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=54.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecC---C-CCCCCC--------cceEEEEeCChhHHHHHHHhc
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKG---Y-NNFEKN--------VGFGFVIYDGPAAEKSAMKAV 214 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~---~-~~~~~~--------~g~~fv~f~~~~~a~~a~~~~ 214 (798)
+.++|.+-|||.+-.-+.|.++|+.+|.|+.|+|..- . ...|.+ +-||+|+|+..+.|.+|.+.+
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 5679999999999999999999999999999999863 0 011222 568999999999999999887
No 343
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.44 E-value=1.6 Score=50.50 Aligned_cols=15 Identities=13% Similarity=0.065 Sum_probs=8.3
Q ss_pred HHHHccCChHHHHHH
Q 003749 339 HAYAVGRDMEEALSC 353 (798)
Q Consensus 339 ~~~~~~g~~~~A~~~ 353 (798)
.-++..++|.+|+++
T Consensus 685 r~~l~~~~y~~AF~~ 699 (1265)
T KOG1920|consen 685 RTLLDRLRYKEAFEV 699 (1265)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455666666555
No 344
>PRK15331 chaperone protein SicA; Provisional
Probab=96.43 E-value=0.2 Score=44.33 Aligned_cols=87 Identities=9% Similarity=-0.109 Sum_probs=40.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 003749 411 QCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKA 490 (798)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 490 (798)
+...|++++|+.+|+-+.-.+ ..+...|..|..+|-..+++++|+..|......+. -|...+-.+..+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 334444444444444444433 22333444444444455555555555444433322 1333344445555555555555
Q ss_pred HHHHHHHHH
Q 003749 491 LEVSKVMKS 499 (798)
Q Consensus 491 ~~~~~~m~~ 499 (798)
++.|...++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 555555544
No 345
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.40 E-value=0.95 Score=43.20 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=31.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 003749 512 LINGFLKLKDWANVFAVFEDVMRDGLKPDV---VLYNNIIRAFCGMGNMDRAIHIVKEMQK 569 (798)
Q Consensus 512 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~ 569 (798)
+.+.|.+.|.+..|..-++.|++. ..-+. ..+-.+..+|...|..++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445666667777777777766665 22121 2333455566666666666655544433
No 346
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.39 E-value=0.0056 Score=42.82 Aligned_cols=51 Identities=22% Similarity=0.403 Sum_probs=39.8
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHH
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 211 (798)
.|-|.+.+++.. +++...|..||+|.++.+-.+ ..+.+|.|.+..+|.+|+
T Consensus 3 wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~-------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES-------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC-------CcEEEEEECCHHHHHhhC
Confidence 466777776654 445668999999999888633 569999999999999884
No 347
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.39 E-value=0.021 Score=43.59 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=33.0
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 689 KACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
.+|.+.+++++|.++++.+...+ +.+...|..+..++.+.|++++|.+.|++..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34556666666666666666554 44555555566666666666666666666655
No 348
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=96.36 E-value=1.6 Score=45.51 Aligned_cols=166 Identities=19% Similarity=0.180 Sum_probs=96.6
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 003749 399 LNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLI 478 (798)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 478 (798)
.|.....+++..+....+..-.+.+..+|...| .+...|..++.+|..+ ..+.-..+|+++.+..+. |++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355556666777777777777777777777654 3456667777777766 445566677777665544 444444455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 003749 479 NLYTKIGKVSKALEVSKVMKSSGIKH--N---MKTYSMLINGFLKLKDWANVFAVFEDVMRD-GLKPDVVLYNNIIRAFC 552 (798)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~~--~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~ 552 (798)
..|-+ ++.+.+..+|.++...-+.. + -..|.-|.... ..+.+..+.+..++... |...-.+.+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 54544 66677777777665432210 1 12444443322 34556666666555442 33334455555666667
Q ss_pred cCCChHHHHHHHHHHHHCC
Q 003749 553 GMGNMDRAIHIVKEMQKER 571 (798)
Q Consensus 553 ~~g~~~~A~~~~~~~~~~~ 571 (798)
...++++|++++.-+.+.+
T Consensus 217 ~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 217 ENENWTEAIRILKHILEHD 235 (711)
T ss_pred cccCHHHHHHHHHHHhhhc
Confidence 7777777777777665544
No 349
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.35 E-value=1.3 Score=44.46 Aligned_cols=148 Identities=18% Similarity=0.134 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003749 591 EMKRALEIFDMMRRSGCIPTVHTF-NALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYF 669 (798)
Q Consensus 591 ~~~~a~~~~~~~~~~~~~p~~~~~-~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 669 (798)
+...|...-.+..+. .||..-- ..-..+|.+.|+..++-++++.+-+.. |....+.. ..+.+.|+. ++.=+
T Consensus 244 dp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gdt--a~dRl 315 (531)
T COG3898 244 DPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGDT--ALDRL 315 (531)
T ss_pred ChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCCc--HHHHH
Confidence 345555555555443 3443222 223456889999999999999998774 44443332 234455552 33323
Q ss_pred H---HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc
Q 003749 670 T---KLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARR-GDVWEAADLMQQMKQE 745 (798)
Q Consensus 670 ~---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 745 (798)
+ ++.+... .+......+..+-...|++..|..--+..... .|....|-.|.+.-... ||-.++...+-+....
T Consensus 316 kRa~~L~slk~-nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 316 KRAKKLESLKP-NNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhcCc-cchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 3 2333322 25667777888888899998888777766654 47788888888876655 9999999888888765
Q ss_pred CCCC
Q 003749 746 GVQP 749 (798)
Q Consensus 746 g~~p 749 (798)
--.|
T Consensus 393 PrdP 396 (531)
T COG3898 393 PRDP 396 (531)
T ss_pred CCCC
Confidence 4444
No 350
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.35 E-value=2.8 Score=48.57 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 003749 510 SMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARA 589 (798)
Q Consensus 510 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 589 (798)
.-.++.-.+.+.+.+|+.++..-.+ .-...|.+...-+....++++|.-+|+..-+ ....+.+|..+
T Consensus 912 ~e~~n~I~kh~Ly~~aL~ly~~~~e----~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~ 978 (1265)
T KOG1920|consen 912 PECKNYIKKHGLYDEALALYKPDSE----KQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKEC 978 (1265)
T ss_pred HHHHHHHHhcccchhhhheeccCHH----HHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHh
Confidence 3344444455666666655532111 1223444455555667778888777765432 23356678888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 590 GEMKRALEIFDMMRRSGCIPTV--HTFNALILGLVEKRQMEKAIEILDEMTL 639 (798)
Q Consensus 590 ~~~~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~ 639 (798)
|+|.+|+.+..++... -+. .+-..|+.-+...++.-+|-+++.+...
T Consensus 979 ~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 979 GDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred ccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 8888888888776532 122 2225667777788888888888776653
No 351
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.44 Score=46.26 Aligned_cols=139 Identities=17% Similarity=0.176 Sum_probs=59.6
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 003749 343 VGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEA 422 (798)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (798)
..|++.+|..+|+......-. +...-..++.+|...|+++.|..++..+....-.........-|..+.+.....+..+
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 445555555555555443211 3334444555555555555555555544332111111111122233333333333333
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHHcC
Q 003749 423 LVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC--GFSPSIISYGCLINLYTKIG 485 (798)
Q Consensus 423 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g 485 (798)
+-.++-.. +-|...-..+...|...|+.++|++.+-.+... |.. |...-..|+..+.-.|
T Consensus 225 l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 225 LQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 33333321 224445555555556666666665555555443 222 3344444554444444
No 352
>PRK15331 chaperone protein SicA; Provisional
Probab=96.28 E-value=0.066 Score=47.23 Aligned_cols=85 Identities=11% Similarity=-0.143 Sum_probs=35.9
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 003749 343 VGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEA 422 (798)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (798)
..|++++|..+|.-+...++- +..-|..|..++-..+++++|+..|......+. -|...+..+..+|...|+.+.|+.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 344444444444444433221 333344444444444444444444444433322 133333334444444444444444
Q ss_pred HHHHHHH
Q 003749 423 LVRDMEE 429 (798)
Q Consensus 423 ~~~~m~~ 429 (798)
.|...++
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 4444443
No 353
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.28 E-value=1.2 Score=43.09 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=22.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 481 YTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMR 534 (798)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 534 (798)
+...++.+.+...+.++...........+..+...+...++++.+...+.....
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 344445555555544444432110233334444444444444444444444443
No 354
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.27 E-value=0.078 Score=47.23 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 405 GNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (798)
Q Consensus 405 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (798)
..++..+...|++++|.++++.+.... +.+...|..+|.+|...|+...|+++|+++.
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 334445555566666666666665553 3455555566666666666666666555553
No 355
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.26 E-value=0.021 Score=45.90 Aligned_cols=77 Identities=22% Similarity=0.375 Sum_probs=48.9
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEe-cCCC-----CCCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILI-KGYN-----NFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~-~~~~-----~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~ 225 (798)
+-|.|=+.|+. .-..+-+.|++||.|.+..-. ++.+ ........-.|.|+++.+|.+|+.. ||..+.|..
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~---NG~i~~g~~ 82 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK---NGTIFSGSL 82 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT---TTEEETTCE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh---CCeEEcCcE
Confidence 35666677777 556678899999999877511 1100 0001156889999999999999965 999999865
Q ss_pred e-eeeccc
Q 003749 226 L-TVKLDD 232 (798)
Q Consensus 226 ~-~v~~~~ 232 (798)
| -|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4 466653
No 356
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.22 Score=48.62 Aligned_cols=158 Identities=13% Similarity=0.023 Sum_probs=113.2
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCChhhH--HHHHHHHHhcC
Q 003749 339 HAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER-HATLNAIIY--GNIIYAQCQTR 415 (798)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~--~~l~~~~~~~g 415 (798)
..+...|+..+|...++++++. ++-|...+.-.-.+|.-.|+.+.-...+++++.. +......+| ..+.-++.+.|
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHhhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 3455678999999999999886 6668888888888999999999999999998765 211112233 33334456899
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 003749 416 NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC---GFSPSIISYGCLINLYTKIGKVSKALE 492 (798)
Q Consensus 416 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~ 492 (798)
-+++|++.-++..+.+ +.|.....++.+.+...|+++++.+.+.+-... +.-.-..-|-...-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 9999999999998876 667888889999999999999999887765432 100112223334445666678888888
Q ss_pred HHHHHH
Q 003749 493 VSKVMK 498 (798)
Q Consensus 493 ~~~~m~ 498 (798)
+|+.-+
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 876543
No 357
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.22 E-value=0.11 Score=44.39 Aligned_cols=108 Identities=10% Similarity=0.178 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003749 645 NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILID 724 (798)
Q Consensus 645 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 724 (798)
|..++.++|.++++.|+.+....+++..= |+..+... ..+. .-....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 45667777777777777777766665442 22211100 0000 1112234567777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCcccccc
Q 003749 725 GWARRGDVWEAADLMQQMKQ-EGVQPDVHTYTSFINACSKAGDMQVRFS 772 (798)
Q Consensus 725 ~~~~~g~~~~A~~~~~~m~~-~g~~pd~~~~~~l~~~~~~~g~~~~a~~ 772 (798)
+|+..|++..|+++++...+ .++..+..+|..|+.-+...-+.+....
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~~~~~~~ 109 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSSKREDRA 109 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccc
Confidence 77777777777777777654 3666667777777776666655444433
No 358
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.21 E-value=0.03 Score=42.78 Aligned_cols=55 Identities=24% Similarity=0.153 Sum_probs=26.7
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003749 340 AYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 340 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
.|.+.+++++|+++++.+++.+ +.+...|.....+|.+.|++++|++.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444455555555555555442 124444444555555555555555555555443
No 359
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.081 Score=53.41 Aligned_cols=139 Identities=13% Similarity=0.018 Sum_probs=85.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003749 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN 381 (798)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 381 (798)
-.+.|.+.|++..|...|++++..= . |.+.-+.++..... .+ -..+++.|+.+|.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l-~------------~~~~~~~ee~~~~~-~~-------k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFL-E------------YRRSFDEEEQKKAE-AL-------KLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHh-h------------ccccCCHHHHHHHH-HH-------HHHHhhHHHHHHHhhhh
Confidence 4577888888888888888876530 0 00111112221111 11 23467777788888888
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHH
Q 003749 382 AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK-CLIVFE 460 (798)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~ 460 (798)
+.+|++..++.+..+.. |+.....-..+|...|+++.|+..|+++++.. +.|-.+-+.|+.+..+.....+ ..++|.
T Consensus 273 ~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877543 77777777788888888888888888888763 3344444555544444433332 245555
Q ss_pred HHH
Q 003749 461 RLK 463 (798)
Q Consensus 461 ~~~ 463 (798)
.|.
T Consensus 351 ~mF 353 (397)
T KOG0543|consen 351 NMF 353 (397)
T ss_pred HHh
Confidence 554
No 360
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=2.7 Score=46.42 Aligned_cols=168 Identities=11% Similarity=0.098 Sum_probs=97.4
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003749 337 LIHAYAVGRDMEEALSCVRKMKEEGIEM---SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ 413 (798)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 413 (798)
-|+.+.+.+.+++|+++.+..... .+ -...+...|..+...|++++|-...-+|... +..-|...+..+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 356677888999999987655432 33 2456778888889999999999988888754 66777777777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 003749 414 TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEV 493 (798)
Q Consensus 414 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 493 (798)
.++......++ ....-..+..+|..++..+.. .+. .-|.++... . +...|..+...-+-.
T Consensus 436 ~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~-~~~----~~F~e~i~~-W--p~~Lys~l~iisa~~--------- 495 (846)
T KOG2066|consen 436 LDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA-SDV----KGFLELIKE-W--PGHLYSVLTIISATE--------- 495 (846)
T ss_pred ccccchhhccC---CCCCcccCchHHHHHHHHHHH-HHH----HHHHHHHHh-C--ChhhhhhhHHHhhcc---------
Confidence 66665433332 221112345667777777665 222 222222221 1 222333222111111
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 494 SKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVM 533 (798)
Q Consensus 494 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (798)
.++.+. .-+......|+..|...+++..|+.++-...
T Consensus 496 -~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 496 -PQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred -hHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 111111 1122233347888888888988888887664
No 361
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.17 E-value=0.1 Score=55.49 Aligned_cols=157 Identities=16% Similarity=0.110 Sum_probs=89.5
Q ss_pred HHHHHcCChHHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003749 304 NYYARRGDMHRARQTFE--NMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN 381 (798)
Q Consensus 304 ~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 381 (798)
+.....|+++++.++.+ .+.. .+ .....+.+++.+-+.|..+.|+.+...- . .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCC
Confidence 44556778887766664 1111 11 2445677888888888888888764332 1 23345567788
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003749 382 AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFER 461 (798)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (798)
++.|.++-++. .+...|..|.....+.|+++-|++.|.+..+ +..|+-.|...|+.+.-.++.+.
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 88877665432 2566777777777788888887777776543 45666677777777666666655
Q ss_pred HHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003749 462 LKECGFSPSIISYGCLINLYTKIGKVSKALEVSKV 496 (798)
Q Consensus 462 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (798)
....| -++....++.-.|+.++..+++.+
T Consensus 399 a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55443 244555555666666666666543
No 362
>PRK11906 transcriptional regulator; Provisional
Probab=96.17 E-value=0.37 Score=50.10 Aligned_cols=116 Identities=7% Similarity=-0.058 Sum_probs=71.8
Q ss_pred hHHHHHHHHHH---hcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHH---------HcCChHHHHHHHHHHHHCCCCCCH
Q 003749 264 EWHRREFRKAV---ETQPENWQAVVSAFERIKKPSRREFGLMVNYYA---------RRGDMHRARQTFENMRARGIEPTL 331 (798)
Q Consensus 264 ~~a~~~f~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~ 331 (798)
+.|...|.+++ +.+|. ....|..+..++. ...+..+|+++.++.++.+ ..|.
T Consensus 275 ~~Al~lf~ra~~~~~ldp~---------------~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da 338 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTL---------------KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDG 338 (458)
T ss_pred HHHHHHHHHHhhcccCCcc---------------cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCH
Confidence 67888888888 66765 1222222222211 2334566777777777765 4466
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003749 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH 396 (798)
Q Consensus 332 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (798)
.....+..++.-.++++.|..+|++....+ +....+|........-.|+.++|++.+++..+..
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 666666666666677777777777777653 2235556666666666777777777777766553
No 363
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.17 E-value=0.9 Score=41.74 Aligned_cols=175 Identities=14% Similarity=0.174 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
.-|+--|...+..+|. -+..||.|.-.+...|+++.|.+.|+...+.+..-+-...|.-|..| -
T Consensus 82 ~LAR~DftQaLai~P~---------------m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y 145 (297)
T COG4785 82 ALARNDFSQALAIRPD---------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-Y 145 (297)
T ss_pred HHHhhhhhhhhhcCCC---------------cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-e
Confidence 6778888888888886 56778889999999999999999999999885333333445445444 4
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCChhhHHHHH-HHHHhcCChHHH
Q 003749 344 GRDMEEALSCVRKMKEEGIE-MSLVTYSIIVGGFAKMGNAEAADH-WFEEAKERHATLNAIIYGNII-YAQCQTRNMERA 420 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A 420 (798)
-|++.-|.+-|...-..+.. |--..|..+... .-+..+|.. +.++.... |..-|...| ..|...=..
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~---k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~--- 215 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ---KLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISE--- 215 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh---hCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccH---
Confidence 58898888877776654321 223344444332 234445543 34444433 434444332 222221111
Q ss_pred HHHHHHHHHcCCC------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 421 EALVRDMEEEGID------APIDIYHMMMDGYTIIGNEEKCLIVFERLKE 464 (798)
Q Consensus 421 ~~~~~~m~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (798)
+.+++++....-. .-..+|.-|.+.|...|+.++|..+|+-...
T Consensus 216 e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 216 ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 2233333322110 0134556666666666666666666665554
No 364
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.16 E-value=1.3 Score=42.34 Aligned_cols=173 Identities=11% Similarity=0.029 Sum_probs=86.8
Q ss_pred ccCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc------
Q 003749 343 VGRDMEEALSCVRKMKEEG--IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT------ 414 (798)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 414 (798)
+.|++++|.+.|+.+..+- -+....+...++-++.+.+++++|+..+++.+..........|..-|.+++..
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~ 125 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDV 125 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcc
Confidence 5567777777776666541 11223344455556666777777777777766654433333333333333311
Q ss_pred -CCh---HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 003749 415 -RNM---ERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKA 490 (798)
Q Consensus 415 -g~~---~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 490 (798)
.+. .+|..-|++++++ -|+ ..-..+|...+..+... =..-=..+.+.|.+.|.+..|
T Consensus 126 ~rDq~~~~~A~~~f~~~i~r--yPn-------------S~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 126 TRDQSAARAAFAAFKELVQR--YPN-------------SRYAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred ccCHHHHHHHHHHHHHHHHH--CCC-------------CcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcChHHH
Confidence 122 2333344444443 111 11111222222221110 000011345677888888888
Q ss_pred HHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003749 491 LEVSKVMKSSGIKHNM---KTYSMLINGFLKLKDWANVFAVFEDVMRD 535 (798)
Q Consensus 491 ~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (798)
..-++.|++. .+.+. ..+-.|..+|...|-.++|...-+-+...
T Consensus 187 ~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 187 INRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 8888888775 33222 24445566777777777777665555443
No 365
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.13 E-value=0.0069 Score=62.33 Aligned_cols=76 Identities=21% Similarity=0.315 Sum_probs=59.3
Q ss_pred ccceeecCCCccCch--H----HHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec-c
Q 003749 151 EGKIFVGNLPNWIKK--H----LVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-G 223 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~--~----~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~-g 223 (798)
...|+|-|.|---.. + -|..+|+++|+|.+..+..+ ..|+++||.|++|++..+|..|++.+ ||+.|+ .
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~--e~ggtkG~lf~E~~~~~~A~~aVK~l--~G~~ldkn 133 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPID--EEGGTKGYLFVEYASMRDAKKAVKSL--NGKRLDKN 133 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccC--ccCCeeeEEEEEecChhhHHHHHHhc--ccceeccc
Confidence 347888888752222 1 35689999999999988876 34559999999999999999999999 999986 5
Q ss_pred eeeeeec
Q 003749 224 RVLTVKL 230 (798)
Q Consensus 224 ~~~~v~~ 230 (798)
+...|..
T Consensus 134 Htf~v~~ 140 (698)
T KOG2314|consen 134 HTFFVRL 140 (698)
T ss_pred ceEEeeh
Confidence 5555543
No 366
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.12 E-value=0.0047 Score=57.12 Aligned_cols=77 Identities=23% Similarity=0.354 Sum_probs=62.1
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCee--ecceeeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE--FHGRVLTV 228 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~--~~g~~~~v 228 (798)
.+.|||.||+..++.+.+++.|+.||+|....++.| ..|++.+=++|+|...-.+.+|...+...|.- ..+++.-|
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD--~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~V 108 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD--DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGV 108 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhcCccchheeeec--ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCC
Confidence 378999999999999999999999999998877776 45888899999999999999999877222222 23555555
Q ss_pred e
Q 003749 229 K 229 (798)
Q Consensus 229 ~ 229 (798)
.
T Consensus 109 e 109 (275)
T KOG0115|consen 109 E 109 (275)
T ss_pred C
Confidence 4
No 367
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.08 E-value=0.011 Score=45.91 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 368 TYSIIVGGFAKMGNAEAADHWFEEAK 393 (798)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (798)
+|+.+...|.+.|++++|+..|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555555555555555443
No 368
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.08 E-value=0.18 Score=52.25 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=34.2
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTL----HVYTNLIHAYAVGRDMEEALSCVRKMKE 359 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 359 (798)
...|+.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|.+.|++++|+..+++.++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555556666666666666666665555 2332 2355555555555555555555555554
No 369
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.08 E-value=0.04 Score=49.14 Aligned_cols=71 Identities=24% Similarity=0.369 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 003749 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ-----EGVQPDVHTY 754 (798)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~~ 754 (798)
....++..+...|++++|..+++.+...+ +-|...|..+|.+|...|+..+|+++|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 55667777888888888888888888776 66777888889999999998888888888753 4888887664
No 370
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.092 Score=53.01 Aligned_cols=97 Identities=18% Similarity=0.181 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003749 331 LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (798)
Q Consensus 331 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (798)
+.+++.+.-+|.+.+++.+|++..++.++.+ +.|+....--..+|...|+++.|+..|+++++..+. |..+-..|+.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 3456778888888899999999888888875 447788888888888899999999999998887433 45555555555
Q ss_pred HHhcCChHH-HHHHHHHHHH
Q 003749 411 QCQTRNMER-AEALVRDMEE 429 (798)
Q Consensus 411 ~~~~g~~~~-A~~~~~~m~~ 429 (798)
--+.....+ ..++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 444444433 3566666665
No 371
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.06 E-value=1.8 Score=43.13 Aligned_cols=131 Identities=15% Similarity=0.069 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCC---CHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRAR--GIEP---TLHVYTNLIHAYAVGRDMEEALSCVRKMKEE-GIEM---SLVT 368 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~~---~~~~ 368 (798)
+|..+..+.++.|.+++++..--.-+.. .... -...|..+.+++-+.-++.+++..-..-... |..+ --..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 4556667777777766655432221111 0000 1123444444444444444444444333321 1111 1123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003749 369 YSIIVGGFAKMGNAEAADHWFEEAKERH-----ATLNAIIYGNIIYAQCQTRNMERAEALVRDME 428 (798)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 428 (798)
..++..++...+.++++++.|+...+.- ......++..|...|.+..++++|.-...+..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAA 189 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHH
Confidence 3455666666677777777777665431 12223455666666666666666665554443
No 372
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.03 E-value=0.49 Score=49.32 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=59.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 003749 650 TTIMHGYASLGDTGKAFEYFTKLRNEGLE-LDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNT-FVYNILIDGWA 727 (798)
Q Consensus 650 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 727 (798)
..|..++.+.|+.++|++.|++|++.... -+..+...|+.++...+++.++..++.+..+...+.+. .+|+..+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 44666667788888888888888754322 23446677888888888888888888776554433333 24554433332
Q ss_pred HcCC---------------HHHHHHHHHHHHHc
Q 003749 728 RRGD---------------VWEAADLMQQMKQE 745 (798)
Q Consensus 728 ~~g~---------------~~~A~~~~~~m~~~ 745 (798)
..|+ ...|++.+.+..+.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvef 375 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF 375 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHh
Confidence 2222 13456677776663
No 373
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.00 E-value=0.014 Score=45.35 Aligned_cols=61 Identities=23% Similarity=0.203 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003749 683 TYEALLKACCKSGRMQSALAVTKEMSAQ----KI-PRN-TFVYNILIDGWARRGDVWEAADLMQQMK 743 (798)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (798)
+|+.+..+|...|++++|+..+++..+. +- .++ ..+++.++.+|...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555555421 10 011 3356666666777777777777666654
No 374
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.99 E-value=0.12 Score=54.83 Aligned_cols=157 Identities=18% Similarity=0.230 Sum_probs=104.5
Q ss_pred HHHHccCChHHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 003749 339 HAYAVGRDMEEALSCVR--KMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN 416 (798)
Q Consensus 339 ~~~~~~g~~~~A~~~~~--~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 416 (798)
+...-.++++++.++.+ ++... + ...-.+.++..+-+.|..+.|+.+-..-.. -.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~-i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPN-I--PKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhccc-C--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCC
Confidence 44455688888777664 22211 1 244588899999999999999987654432 2455678899
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003749 417 MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKV 496 (798)
Q Consensus 417 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (798)
++.|.++.+++ .+...|..|.+....+|+++-|.+.|.+..+ |..|+-.|.-.|+.+...++.+.
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 99998877543 2567899999999999999999999987643 56777888889998888888877
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003749 497 MKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFED 531 (798)
Q Consensus 497 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 531 (798)
....|- ++....++.-.|++++..+++.+
T Consensus 399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 776642 44455555667887777777654
No 375
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.98 E-value=0.0083 Score=59.30 Aligned_cols=75 Identities=19% Similarity=0.334 Sum_probs=59.5
Q ss_pred ceeecCCCccCchHHHHHHhccc--CcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCee-ecceeeeee
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQF--GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE-FHGRVLTVK 229 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~-~~g~~~~v~ 229 (798)
.+|+|||++.++..+|+.+|... |--.. .+++ .||+||+..+..-|.+|++.+ +|.. +.|+++.|.
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~-fl~k--------~gyafvd~pdq~wa~kaie~~--sgk~elqGkr~e~~ 71 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQ-FLVK--------SGYAFVDCPDQQWANKAIETL--SGKVELQGKRQEVE 71 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcc-eeee--------cceeeccCCchhhhhhhHHhh--chhhhhcCceeecc
Confidence 78999999999999999999753 21112 2222 589999999999999999998 7755 889999998
Q ss_pred cccccchhh
Q 003749 230 LDDGRRLKN 238 (798)
Q Consensus 230 ~~~~~~~~~ 238 (798)
..-++....
T Consensus 72 ~sv~kkqrs 80 (584)
T KOG2193|consen 72 HSVPKKQRS 80 (584)
T ss_pred chhhHHHHh
Confidence 886665443
No 376
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.95 E-value=2 Score=42.80 Aligned_cols=57 Identities=18% Similarity=0.070 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-----CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 441 MMMDGYTIIGNEEKCLIVFERLKECG-----FSPSIISYGCLINLYTKIGKVSKALEVSKVM 497 (798)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (798)
.|..++...+.++++++.|+...+.. ......+|-.|...|.+..++++|.-+..+.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA 188 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKA 188 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhH
Confidence 34455555555666666665554321 1112345556666666666666665544443
No 377
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.94 E-value=4.1 Score=46.21 Aligned_cols=165 Identities=11% Similarity=0.052 Sum_probs=72.3
Q ss_pred hhHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCC--H
Q 003749 297 REFGLMVNYYA-RRGDMHRARQTFENMRARGIEPTLH-----VYTNLIHAYAVGRDMEEALSCVRKMKEE--GIEMS--L 366 (798)
Q Consensus 297 ~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~g~~~~A~~~~~~m~~~--g~~~~--~ 366 (798)
.++-.+...|. ...++++|...+++.+...-.++.. ....++..|.+.+... |+..+++.++. +..-. .
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 34445555555 4566777777777665432122211 1223344454444444 66666665542 10001 1
Q ss_pred HHHHHH-HHHHHhcCCHHHHHHHHHHHHhcC---CCCChhhHHHHHHHH--HhcCChHHHHHHHHHHHHcCC--------
Q 003749 367 VTYSII-VGGFAKMGNAEAADHWFEEAKERH---ATLNAIIYGNIIYAQ--CQTRNMERAEALVRDMEEEGI-------- 432 (798)
Q Consensus 367 ~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~~~-------- 432 (798)
..+..+ +..+...+++..|++.++.+...- ..+-..++..++.+. ...+..+++.+.+.++.....
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC
Confidence 111122 222222356677777766665432 111222233333332 234444555555555433211
Q ss_pred -CCChhhHHHHHHHH--HhcCCHHHHHHHHHHH
Q 003749 433 -DAPIDIYHMMMDGY--TIIGNEEKCLIVFERL 462 (798)
Q Consensus 433 -~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~ 462 (798)
.+...+|..+++.+ ...|+++.+...++++
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12344555555443 3445555555444444
No 378
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.92 E-value=0.089 Score=54.45 Aligned_cols=68 Identities=10% Similarity=-0.024 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003749 643 SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDV--FTYEALLKACCKSGRMQSALAVTKEMSAQ 710 (798)
Q Consensus 643 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (798)
+.+...|+.+..+|...|++++|+..|++.++....... .+|..+..+|.+.|++++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345678888999999999999999999998887544221 45888889999999999999999988874
No 379
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=0.06 Score=56.58 Aligned_cols=149 Identities=17% Similarity=0.109 Sum_probs=80.5
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003749 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADH 387 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (798)
-.|+++.|-.++..+.+ ...+.+++.+-+.|..++|+++- +|..- -.....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHH
Confidence 34556655554443332 23455666666666666666542 12211 1223345666776666
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003749 388 WFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (798)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (798)
+..+.. +..-|..|..+..+.+++..|.+.|.+..+ |..|+-.|...|+.+....+-....+.|.
T Consensus 659 la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 555442 455666777777777777777777766544 33455556666665544444444443332
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003749 468 SPSIISYGCLINLYTKIGKVSKALEVSKV 496 (798)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (798)
.|....+|...|+++++++++..
T Consensus 724 ------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 724 ------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ------cchHHHHHHHcCCHHHHHHHHHh
Confidence 22333456666777777666544
No 380
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.80 E-value=1 Score=42.29 Aligned_cols=84 Identities=17% Similarity=0.290 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 003749 369 YSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI 448 (798)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 448 (798)
|.....+|....++++|...+.+..+- .+.|...|- ..+-++.|.-+.++|.+.. .-+..|.--..+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHH
Confidence 444445565666666666666655431 111221111 1122334444444443321 112333444455666
Q ss_pred cCCHHHHHHHHHHH
Q 003749 449 IGNEEKCLIVFERL 462 (798)
Q Consensus 449 ~g~~~~A~~~~~~~ 462 (798)
+|..+.|-..+++.
T Consensus 104 ~GspdtAAmaleKA 117 (308)
T KOG1585|consen 104 CGSPDTAAMALEKA 117 (308)
T ss_pred hCCcchHHHHHHHH
Confidence 66655555555443
No 381
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.80 E-value=4 Score=51.12 Aligned_cols=46 Identities=9% Similarity=0.104 Sum_probs=20.5
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEA 422 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (798)
....|+++.|...|+.+...+.. ....+..++......|.+....-
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~ 1504 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEIL 1504 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHh
Confidence 34455555555555555544221 23334444444344444444443
No 382
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.70 E-value=5 Score=45.46 Aligned_cols=188 Identities=13% Similarity=0.047 Sum_probs=90.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCC-C-----CHHHHHHHHH--HHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHH
Q 003749 588 RAGEMKRALEIFDMMRRSGCI-P-----TVHTFNALIL--GLVEKRQMEKAIEILD--------EMTLAGISPNEHTYTT 651 (798)
Q Consensus 588 ~~~~~~~a~~~~~~~~~~~~~-p-----~~~~~~~li~--~~~~~~~~~~A~~~~~--------~m~~~~~~p~~~t~~~ 651 (798)
-.+++..+...+..+...... + ....+..++. .+-..|+.+.|...|. .....+...+...+..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 467888899988888754211 1 1222222222 2345799999999997 3444443334333322
Q ss_pred --HHHHHHhcC--ChHH--HHHHHHHHHHc---CCCCCHHHHHHH-HHHHHHcC--ChHHHHHHHHHHHh-C--CCCCC-
Q 003749 652 --IMHGYASLG--DTGK--AFEYFTKLRNE---GLELDVFTYEAL-LKACCKSG--RMQSALAVTKEMSA-Q--KIPRN- 715 (798)
Q Consensus 652 --li~~~~~~g--~~~~--A~~~~~~~~~~---~~~~~~~~~~~l-~~~~~~~g--~~~~A~~~~~~~~~-~--~~~~~- 715 (798)
++..+...+ +.++ +.++++.+... ....+..++..+ +.++.... ...++...+.+..+ . ....+
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 112222222 2223 66666666432 112233333333 33343222 22344444433321 1 11111
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC--CHHHHHHH-----HHHHHHcCCcccccccccc
Q 003749 716 --TFVYNILIDGWARRGDVWEAADLMQQMKQE-GVQP--DVHTYTSF-----INACSKAGDMQVRFSIPML 776 (798)
Q Consensus 716 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p--d~~~~~~l-----~~~~~~~g~~~~a~~~~~~ 776 (798)
..+++.|...+. .|+..|..+........ .-.+ ....|..+ .+.+...|+.++|.++...
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~ 602 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQ 602 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 123454555555 78877766554443221 1112 34456333 3457777998888777543
No 383
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=0.2 Score=48.13 Aligned_cols=87 Identities=13% Similarity=0.049 Sum_probs=38.3
Q ss_pred cCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChHH
Q 003749 344 GRDMEEALSCVRKMKEEGIE--MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT--LNAIIYGNIIYAQCQTRNMER 419 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 419 (798)
.|++.+|...|...++.... .....+..|..++...|++++|..+|..+.+.-.. .-..++..|..+..+.|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 34455555555554443110 11223444555555555555555555555443211 112344444444445555555
Q ss_pred HHHHHHHHHHc
Q 003749 420 AEALVRDMEEE 430 (798)
Q Consensus 420 A~~~~~~m~~~ 430 (798)
|...|++++++
T Consensus 234 A~atl~qv~k~ 244 (262)
T COG1729 234 ACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 384
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=1.3 Score=43.11 Aligned_cols=150 Identities=6% Similarity=-0.032 Sum_probs=101.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (798)
.......|++.+|..+|....... .-+...-..++.+|...|+.+.|..++..+....-.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 445678999999999999999874 3345677788999999999999999999886542111122212234444444444
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHH
Q 003749 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGI-DAPIDIYHMMMDGYTIIGNEEKC 455 (798)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 455 (798)
.+...+-.+.-.. +-|...-..+...|...|+.++|.+.+-.+.+++. ..|-..-..|+..+...|..+.+
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 4444444444332 33777888899999999999999998888877642 22345556666666666644433
No 385
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.59 E-value=0.67 Score=40.83 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=19.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 301 LMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
.+|..+.+.+.......+++.+...+. .+....|.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444445555555555444432 334444444444443
No 386
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.57 E-value=2.6 Score=42.35 Aligned_cols=21 Identities=19% Similarity=0.531 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHH
Q 003749 524 NVFAVFEDVMRDGLKPDVVLY 544 (798)
Q Consensus 524 ~a~~~~~~~~~~g~~~~~~~~ 544 (798)
.+.++++.+.+.|++.....|
T Consensus 200 r~~~l~~~l~~~~~kik~~~y 220 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHY 220 (297)
T ss_pred HHHHHHHHHHHcCCccccccc
Confidence 344444444444444433333
No 387
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.50 E-value=0.35 Score=41.34 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcC
Q 003749 642 ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE-GLELDVFTYEALLKACCKSG 695 (798)
Q Consensus 642 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g 695 (798)
..|+..+..+++.+|+..+++..|+++++...+. ++..+..+|..|++-+...-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 4566666666666666666666666666666543 55555666666665554433
No 388
>PRK11906 transcriptional regulator; Provisional
Probab=95.44 E-value=1.4 Score=46.04 Aligned_cols=112 Identities=11% Similarity=0.055 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 003749 626 QMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTK 705 (798)
Q Consensus 626 ~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 705 (798)
...+|.++-++..+.+ .-|......+..++...++++.|..+|++....+.. ...+|......++-+|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456666777777665 566677777777777777788888888888776543 45666666777777888888888888
Q ss_pred HHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 706 EMSAQKIPRNT---FVYNILIDGWARRGDVWEAADLMQQM 742 (798)
Q Consensus 706 ~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (798)
+..+.+ |.. .+.-..++.|+.+ ..++|++++-+-
T Consensus 397 ~alrLs--P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 397 KSLQLE--PRRRKAVVIKECVDMYVPN-PLKNNIKLYYKE 433 (458)
T ss_pred HHhccC--chhhHHHHHHHHHHHHcCC-chhhhHHHHhhc
Confidence 876654 322 2333334455544 456677666543
No 389
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.40 E-value=0.47 Score=40.98 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=27.1
Q ss_pred ccCChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003749 343 VGRDMEEALSCVRKMKEEGIE---MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHA 397 (798)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 397 (798)
+.|++++|.+.|+.+..+ ++ -...+...|+.+|.+.+++++|+..+++.++.++
T Consensus 22 ~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 445555555555555443 11 1223344455555555555555555555555543
No 390
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.37 E-value=1 Score=39.68 Aligned_cols=123 Identities=16% Similarity=0.200 Sum_probs=57.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003749 617 LILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGR 696 (798)
Q Consensus 617 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 696 (798)
++..+.+.+.......+++.+...+ ..+...++.++..|++.+. .+..+.++. ..+......++..|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 3444444445555555555555443 2344455555555554422 233333331 0122233445555666666
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 697 MQSALAVTKEMSAQKIPRNTFVYNILIDGWARR-GDVWEAADLMQQMKQEGVQPDVHTYTSFINACS 762 (798)
Q Consensus 697 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~ 762 (798)
++++..++.++.. |...+..+... ++.+.|++++++- -|...|..++..|.
T Consensus 85 ~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 85 YEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 6666666654432 11122222223 5666666666541 25556666666554
No 391
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.36 E-value=1.4 Score=37.00 Aligned_cols=60 Identities=8% Similarity=0.231 Sum_probs=28.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003749 407 IIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (798)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (798)
.+..+...|+-++-.+++.++.+.+ .++......+..+|.+.|+..++.+++.+.-+.|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3445555566665555555555422 34445555555555555555555555555555443
No 392
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.36 E-value=4.3 Score=42.52 Aligned_cols=240 Identities=9% Similarity=0.113 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHcCCCh-HH
Q 003749 489 KALEVSKVMKSSGIKHNMKTYSMLINGFLKL------KDWANVFAVFEDVMRDG-LKP-DVVLYNNIIRAFCGMGNM-DR 559 (798)
Q Consensus 489 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~g-~~~-~~~~~~~li~~~~~~g~~-~~ 559 (798)
....+|+...+. -++...|+..|..|... ..+...+.+|+...+.+ ..+ ....|..+.-.++....- +-
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 334566666553 34555666666555432 24455556666655543 222 334566666666555543 33
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHhcC-CHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHH--HHHH
Q 003749 560 AIHIVKEMQKERHRPTSRTFMPIIHGFARAG-EMK-RALEIFDMMRRSGCIPTVHTFNALILGLVEKRQ-MEKA--IEIL 634 (798)
Q Consensus 560 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~-~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~-~~~A--~~~~ 634 (798)
|..+..+... -+...|..-+....+.. ++. .-..+|......-+.+....|+... .++ .... ..++
T Consensus 378 a~~l~~e~f~----~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii 448 (568)
T KOG2396|consen 378 AVKLTTELFR----DSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLII 448 (568)
T ss_pred HHHhhHHHhc----chHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHH
Confidence 3444433332 24555555554444332 221 1123333343332223344444443 111 1111 1122
Q ss_pred HHHHHCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---HcCChHHHHHHHHHHHh-
Q 003749 635 DEMTLAGISPNEHTY-TTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACC---KSGRMQSALAVTKEMSA- 709 (798)
Q Consensus 635 ~~m~~~~~~p~~~t~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~- 709 (798)
...... ..++..|+ +.+++.+.+.|-..+|...++.+.... .+....|..+|..-. .+ ++..+..+++.|..
T Consensus 449 ~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc-~l~~~r~~yd~a~~~ 525 (568)
T KOG2396|consen 449 SALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESC-NLANIREYYDRALRE 525 (568)
T ss_pred HHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhc-CchHHHHHHHHHHHH
Confidence 222222 24555554 456677777888888888888887763 356667766665432 23 36777777777764
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 710 QKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 710 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
.| .|...|...+.-=...|+.+.+-.++.+...
T Consensus 526 fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 526 FG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hC--CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 34 6777776666655577777777766666543
No 393
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.33 E-value=6.1 Score=44.05 Aligned_cols=143 Identities=17% Similarity=0.105 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HccCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhc
Q 003749 312 MHRARQTFENMRARGIEPTLHVYTNLIHAY-----AVGRDMEEALSCVRKMKE-------EGIEMSLVTYSIIVGGFAKM 379 (798)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-----~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~l~~~~~~~ 379 (798)
...|.++++...+.| +......+..+| ....|.+.|+.+|+.+.+ .| ......-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888888776 444444444333 345688888888888876 43 333455566666653
Q ss_pred C-----CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----
Q 003749 380 G-----NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ---TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYT---- 447 (798)
Q Consensus 380 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~---- 447 (798)
. +.+.|+.+|.+.-..|.. +. -..+...|.. ..+..+|.++|....+.|. ...+..+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a--~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DA--QYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hH--HHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCC
Confidence 2 455677777776665432 22 2222222221 1345666666666666652 233333333332
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 003749 448 IIGNEEKCLIVFERLKECG 466 (798)
Q Consensus 448 ~~g~~~~A~~~~~~~~~~~ 466 (798)
...+...|..++.+..+.|
T Consensus 376 v~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG 394 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc
Confidence 2234556666666665554
No 394
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=0.53 Score=46.14 Aligned_cols=155 Identities=8% Similarity=-0.038 Sum_probs=92.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHH--HHHHHHHhcCCh
Q 003749 587 ARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEH--TYT--TIMHGYASLGDT 662 (798)
Q Consensus 587 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--t~~--~li~~~~~~g~~ 662 (798)
.-.|++.+|-..++++.+.- ..|...++..-.+|.-+|+.+.-...+++++..- .++.. +|. .+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccc
Confidence 34566666666677766543 3366677777777777777777777777766441 23332 222 222344567778
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003749 663 GKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ---KIPRNTFVYNILIDGWARRGDVWEAADLM 739 (798)
Q Consensus 663 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 739 (798)
++|.+.-++..+.+. .|.-...++...+-..|++.++.++..+-... +.-.-...|....-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 888877777777653 36666677777777777888877776654421 10001122333444445567777788777
Q ss_pred HHHHH
Q 003749 740 QQMKQ 744 (798)
Q Consensus 740 ~~m~~ 744 (798)
+.=+-
T Consensus 271 D~ei~ 275 (491)
T KOG2610|consen 271 DREIW 275 (491)
T ss_pred HHHHH
Confidence 76443
No 395
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.23 E-value=3.8 Score=41.13 Aligned_cols=130 Identities=18% Similarity=0.301 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CC----ChHHHHHHHHHHHHCCCC---CCcccHHHHHHHHHhcCC-
Q 003749 522 WANVFAVFEDVMRDGLKPDVVLYNNIIRAFCG--MG----NMDRAIHIVKEMQKERHR---PTSRTFMPIIHGFARAGE- 591 (798)
Q Consensus 522 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~- 591 (798)
+++.+.+++.|.+.|+..+..+|-+....... .. ...+|..+|+.|.+.... .+...+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44556667777777776666555443222222 12 244567777777766432 233344444332 2222
Q ss_pred ---HHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003749 592 ---MKRALEIFDMMRRSGCIPT--VHTFNALILGLVEKRQ--MEKAIEILDEMTLAGISPNEHTYTTIM 653 (798)
Q Consensus 592 ---~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~t~~~li 653 (798)
.+.++.+|+.+.+.|+..+ ....+.++..+..... ..++.++++.+.+.+++.....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 2455556666666554432 1222222222111111 335566666666666666655555554
No 396
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.19 E-value=0.03 Score=54.63 Aligned_cols=82 Identities=13% Similarity=0.195 Sum_probs=69.5
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
.+..+.|.+|...++|.+|.+..+.||.|..|..+.. +-.+.|+|++.+.|..++.....|...+.|+.-.++
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~-------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~N 102 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH-------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFN 102 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEeccc-------cceeeeeeccccchhhheehhccCcccccCchhhcc
Confidence 3448999999999999999999999999999988765 568999999999999998877778888899888887
Q ss_pred cccccchhh
Q 003749 230 LDDGRRLKN 238 (798)
Q Consensus 230 ~~~~~~~~~ 238 (798)
++.+..+.+
T Consensus 103 yStsq~i~R 111 (494)
T KOG1456|consen 103 YSTSQCIER 111 (494)
T ss_pred cchhhhhcc
Confidence 776554443
No 397
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.16 E-value=0.11 Score=57.89 Aligned_cols=9 Identities=22% Similarity=0.408 Sum_probs=4.3
Q ss_pred cceeeeeec
Q 003749 222 HGRVLTVKL 230 (798)
Q Consensus 222 ~g~~~~v~~ 230 (798)
-|+.+.|..
T Consensus 533 ~g~~~~v~c 541 (585)
T PRK14950 533 VGKTCAVRC 541 (585)
T ss_pred hCCceEEEE
Confidence 355555544
No 398
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.14 E-value=0.4 Score=39.98 Aligned_cols=94 Identities=23% Similarity=0.183 Sum_probs=62.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS---LVTYSIIVGGFAKM 379 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~ 379 (798)
..+++..|+++.|++.|.+.+.. .+-....||.-..++--.|+.++|++-+++.++..-.-. ...|..-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34566778888888888887776 234667788888888888888888888877776421211 12244445556667
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 003749 380 GNAEAADHWFEEAKERHA 397 (798)
Q Consensus 380 g~~~~A~~~~~~~~~~~~ 397 (798)
|+.+.|+.-|+..-+.|.
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 777777777777666553
No 399
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.06 E-value=0.025 Score=62.03 Aligned_cols=82 Identities=22% Similarity=0.406 Sum_probs=70.2
Q ss_pred hcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec--ce
Q 003749 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH--GR 224 (798)
Q Consensus 147 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~--g~ 224 (798)
.....+.+|||+|+.++....|...|..||.|..|.+-.. .-|++|.|++...++.|...| -|..|+ .+
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-------q~yayi~yes~~~aq~a~~~~--rgap~G~P~~ 521 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-------QPYAYIQYESPPAAQAATHDM--RGAPLGGPPR 521 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-------CcceeeecccCccchhhHHHH--hcCcCCCCCc
Confidence 4566779999999999999999999999999999877443 569999999999999999999 899987 46
Q ss_pred eeeeecccccchh
Q 003749 225 VLTVKLDDGRRLK 237 (798)
Q Consensus 225 ~~~v~~~~~~~~~ 237 (798)
++.|.++....-.
T Consensus 522 r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 522 RLRVDLASPPGAT 534 (975)
T ss_pred ccccccccCCCCC
Confidence 6888888766443
No 400
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.98 E-value=0.79 Score=38.32 Aligned_cols=92 Identities=16% Similarity=0.022 Sum_probs=57.8
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcC
Q 003749 339 HAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNA---IIYGNIIYAQCQTR 415 (798)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g 415 (798)
.+++..|++++|++.|.+.+.. .+-+...||.-..++.-.|+.++|++-+++..+....-.. ..|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4566778888888888777765 2346777888888888888888888777777664221111 22333334455556
Q ss_pred ChHHHHHHHHHHHHcC
Q 003749 416 NMERAEALVRDMEEEG 431 (798)
Q Consensus 416 ~~~~A~~~~~~m~~~~ 431 (798)
+.+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666666555554
No 401
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.89 E-value=2.4 Score=44.51 Aligned_cols=148 Identities=11% Similarity=0.148 Sum_probs=75.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003749 302 MVNYYARRGDMHRARQTFENMRARGIEPTL-HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG 380 (798)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 380 (798)
+|...=+..+.+.-+++-.++.+. .||- ..|..|.. -....+.+|.++|++..+.|- ..+ .+..
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE----~~l-------g~s~ 238 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLAE--EEASTIVEAEELLRQAVKAGE----ASL-------GKSQ 238 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHH----Hhh-------chhh
Confidence 333334555566666666666654 2222 22222211 123456778888877766430 000 0000
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHH
Q 003749 381 NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID-APIDIYHMMMDGYTIIGNEEKCLIVF 459 (798)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (798)
.....-..++.+..++..+-..+-..+..++.+.|+.++|.+.+++|.+.... ....+...|+.++...+.+.++..++
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 00010111122222222222333344666666778888888888887764322 23446667777788888888887777
Q ss_pred HHHHH
Q 003749 460 ERLKE 464 (798)
Q Consensus 460 ~~~~~ 464 (798)
.+..+
T Consensus 319 ~kYdD 323 (539)
T PF04184_consen 319 AKYDD 323 (539)
T ss_pred HHhcc
Confidence 77644
No 402
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.86 E-value=0.04 Score=34.39 Aligned_cols=33 Identities=27% Similarity=0.586 Sum_probs=29.5
Q ss_pred HHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHH
Q 003749 270 FRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQ 317 (798)
Q Consensus 270 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 317 (798)
|+++++.+|. +...|+.|...|...|++++|++
T Consensus 2 y~kAie~~P~---------------n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPN---------------NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCC---------------CHHHHHHHHHHHHHCcCHHhhcC
Confidence 7889999998 78889999999999999999863
No 403
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.86 E-value=0.026 Score=55.21 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=62.9
Q ss_pred cceeecCCCccCchHHHHHHhcccCc-c--eEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGP-I--KNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~-v--~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
..|=..+||+..+.++|-.+|..|-. | ..|.++.+ ..|++.|=|||+|.+.+.|..|.... +++..++|-|.|
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N--~qGrPSGeAFIqm~nae~a~aaaqk~--hk~~mk~RYiEv 356 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN--GQGRPSGEAFIQMRNAERARAAAQKC--HKKLMKSRYIEV 356 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc--CCCCcChhhhhhhhhhHHHHHHHHHH--HHhhcccceEEE
Confidence 36778999999999999999998853 3 24777764 78999999999999999999999887 777777888877
Q ss_pred ecc
Q 003749 229 KLD 231 (798)
Q Consensus 229 ~~~ 231 (798)
--+
T Consensus 357 fp~ 359 (508)
T KOG1365|consen 357 FPC 359 (508)
T ss_pred eec
Confidence 444
No 404
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.85 E-value=0.012 Score=54.69 Aligned_cols=61 Identities=16% Similarity=0.307 Sum_probs=49.2
Q ss_pred HHHHHhc-ccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 167 LVMEFFR-QFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 167 ~l~~~f~-~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++...|+ +||+|+++.|-.+ ..-.-.|=++|.|...++|.+|+..| |+..+.|++|..++.
T Consensus 84 d~f~E~~~kygEiee~~Vc~N--l~~hl~GNVYV~f~~Ee~ae~a~~~l--nnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDN--LGDHLVGNVYVKFRSEEDAEAALEDL--NNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcc--cchhhhhhhhhhcccHHHHHHHHHHH--cCccccCCcceeeec
Confidence 4444445 9999999977653 22233788999999999999999999 999999999988775
No 405
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=94.80 E-value=0.049 Score=65.05 Aligned_cols=7 Identities=14% Similarity=0.259 Sum_probs=2.9
Q ss_pred CCeeecc
Q 003749 217 DGVEFHG 223 (798)
Q Consensus 217 ~~~~~~g 223 (798)
+|.++++
T Consensus 1858 sG~YVDs 1864 (2039)
T PRK15319 1858 SGAYVDS 1864 (2039)
T ss_pred cceEEEE
Confidence 3444443
No 406
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.76 E-value=6.4 Score=41.34 Aligned_cols=180 Identities=9% Similarity=0.102 Sum_probs=111.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 540 DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALIL 619 (798)
Q Consensus 540 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 619 (798)
|.....+++..+..+-.+.-...+..+|...|- +-..+..++.+|..+ .-+.-..+++++.+..+. |++.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 445556677777777777777777777777652 445667777777776 556667777777776553 4444445554
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHH
Q 003749 620 GLVEKRQMEKAIEILDEMTLAGISP-----NEHTYTTIMHGYASLGDTGKAFEYFTKLRNE-GLELDVFTYEALLKACCK 693 (798)
Q Consensus 620 ~~~~~~~~~~A~~~~~~m~~~~~~p-----~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 693 (798)
-|.+ ++.+.+..+|.++...-+.. -...|.-|.... ..+.+..+.+..++... |..--...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 77777777777766442211 112444444211 24466666666666533 444445566666677778
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003749 694 SGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWA 727 (798)
Q Consensus 694 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 727 (798)
..++++|++++..+.+.+ ..|...-..++..+.
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 888888888888887765 455555555665554
No 407
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.66 E-value=0.86 Score=39.40 Aligned_cols=85 Identities=20% Similarity=0.194 Sum_probs=61.0
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGI--EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSII 372 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 372 (798)
+...+..-.....+.|++++|++.|+.+..+-. .-...+...++.+|.+.+++++|+..+++.++....--..-|...
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 334444555667789999999999999998711 224456778899999999999999999999997533223445555
Q ss_pred HHHHHhc
Q 003749 373 VGGFAKM 379 (798)
Q Consensus 373 ~~~~~~~ 379 (798)
+.+++..
T Consensus 89 ~~gL~~~ 95 (142)
T PF13512_consen 89 MRGLSYY 95 (142)
T ss_pred HHHHHHH
Confidence 5555443
No 408
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.61 E-value=0.01 Score=64.93 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=68.2
Q ss_pred hhhhcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc
Q 003749 144 EETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (798)
Q Consensus 144 ~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g 223 (798)
..++...+.+||+|||+..+++.+|+..|..+|.|.+|+|-+-+..++ .-|+||.|.+...+-+|...+ .+..|..
T Consensus 365 ~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~e--sa~~f~~~~n~dmtp~ak~e~--s~~~I~~ 440 (975)
T KOG0112|consen 365 KLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTE--SAYAFVSLLNTDMTPSAKFEE--SGPLIGN 440 (975)
T ss_pred cccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcc--cchhhhhhhccccCcccchhh--cCCcccc
Confidence 455667778999999999999999999999999999999866422222 459999999999999999887 7777765
Q ss_pred eeeeeecc
Q 003749 224 RVLTVKLD 231 (798)
Q Consensus 224 ~~~~v~~~ 231 (798)
..+++.+.
T Consensus 441 g~~r~glG 448 (975)
T KOG0112|consen 441 GTHRIGLG 448 (975)
T ss_pred Cccccccc
Confidence 56665554
No 409
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.56 E-value=0.75 Score=44.30 Aligned_cols=97 Identities=15% Similarity=0.153 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCCHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGI--EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGI--EMSLVTYSIIV 373 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~l~ 373 (798)
.|+.-+.. .+.|++.+|...|...++..- .-....+..|..++...|++++|..+|..+.+.-. +--...+..|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45554444 478889999999999998731 11233567788999999999999999999987521 12357888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 003749 374 GGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
.+..+.|+.++|..+|++++++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999999999999887
No 410
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.45 E-value=7.7 Score=43.79 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=12.4
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 003749 477 LINLYTKIGKVSKALEVSKV 496 (798)
Q Consensus 477 li~~~~~~g~~~~A~~~~~~ 496 (798)
....+.-.|+++.|++.+-.
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHh
Confidence 34555667777777777655
No 411
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=94.45 E-value=0.092 Score=45.98 Aligned_cols=64 Identities=23% Similarity=0.302 Sum_probs=56.6
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH 222 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~ 222 (798)
+...+|.|.+||...+..+|+++..+.|.|-...+.+| |++.|+|...++.+-|+..| ....+.
T Consensus 113 rSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD--------g~GvV~~~r~eDMkYAvr~l--d~~~~~ 176 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD--------GVGVVEYLRKEDMKYAVRKL--DDQKFR 176 (241)
T ss_pred ccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc--------cceeeeeeehhhHHHHHHhh--cccccc
Confidence 34458999999999999999999999999999999887 79999999999999999998 555543
No 412
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.42 E-value=2.4 Score=37.64 Aligned_cols=122 Identities=12% Similarity=0.080 Sum_probs=49.9
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh---hHHHHHHHHHhcCChH
Q 003749 343 VGRDMEEALSCVRKMKEEGIEMSL-VTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAI---IYGNIIYAQCQTRNME 418 (798)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~ 418 (798)
+.+..++|+.-|..+.+.|...-. ....-+.......|+-..|...|+++-.....|-.. .-..-...+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 344555555555555555433111 111222233445555555555555554432222111 1111122233445555
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 419 RAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKE 464 (798)
Q Consensus 419 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (798)
......+-+-..+.+.....--.|.-+-.+.|++.+|.++|..+.+
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4444444443333222222223333334444444444444444443
No 413
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.41 E-value=0.23 Score=55.56 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=4.6
Q ss_pred eeecceeeeee
Q 003749 219 VEFHGRVLTVK 229 (798)
Q Consensus 219 ~~~~g~~~~v~ 229 (798)
+.+.|+.+.+.
T Consensus 496 ~~~~~~~l~l~ 506 (585)
T PRK14950 496 VSVEKNTLTLS 506 (585)
T ss_pred eeecCCEEEEe
Confidence 33444444443
No 414
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.41 E-value=0.04 Score=54.01 Aligned_cols=59 Identities=20% Similarity=0.293 Sum_probs=48.3
Q ss_pred ceeecCCCccCchHHHHHHhcc----cCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHh
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQ----FGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~----~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 213 (798)
.|=..+||+++++.++.++|.. -|..+.|..++ +.+|+..|-|||.|+.++.|+.|+..
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~--rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT--RPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE--CCCCCcccceEEEecCHHHHHHHHHH
Confidence 4556799999999999999963 23455666665 46799999999999999999999975
No 415
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.40 E-value=10 Score=42.21 Aligned_cols=177 Identities=14% Similarity=0.063 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------cCCCCChhhHHHHHHHHHhc
Q 003749 347 MEEALSCVRKMKEEGIEMSLVTYSIIVGG-----FAKMGNAEAADHWFEEAKE-------RHATLNAIIYGNIIYAQCQT 414 (798)
Q Consensus 347 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 414 (798)
..+|.+.++...+.| +......++.+ +....+.+.|+.+|..+.+ .+ +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 567888888888876 44443333333 4456788999999998876 33 334555666666654
Q ss_pred C-----ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH----
Q 003749 415 R-----NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII---GNEEKCLIVFERLKECGFSPSIISYGCLINLYT---- 482 (798)
Q Consensus 415 g-----~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---- 482 (798)
. +.+.|..++.+..+.|. + .....|...|..- .+...|.++|......|.. ..+-.+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~--~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-P--DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-c--hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCC
Confidence 3 55668888877777762 2 2333344444332 3566788888777776632 22222332222
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003749 483 KIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGL 537 (798)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 537 (798)
...+.+.|..++++.-+.| .+....-...+..+.. ++++.+...+..+.+.|.
T Consensus 376 v~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 2235677777777777765 2222222222333333 666666666555555443
No 416
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.37 E-value=0.03 Score=58.30 Aligned_cols=95 Identities=12% Similarity=0.122 Sum_probs=71.9
Q ss_pred cccccceeecCCCccCchHHHHHHhc-ccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeee---cc
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFR-QFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF---HG 223 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~-~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~---~g 223 (798)
......|||.||-.-.|.-.|+.++. .+|.|.+. .+| +-|..|||.|.+.+.|.+.+.+| ||+.. ++
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD-----kIKShCyV~yss~eEA~atr~Al--hnV~WP~sNP 511 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD-----KIKSHCYVSYSSVEEAAATREAL--HNVQWPPSNP 511 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH-----HhhcceeEecccHHHHHHHHHHH--hccccCCCCC
Confidence 34567899999999999999999998 67788777 334 23789999999999999999999 99986 57
Q ss_pred eeeeeecccccchhhHHHHhhhhc--cCCC
Q 003749 224 RVLTVKLDDGRRLKNKAEVRARWV--AGNN 251 (798)
Q Consensus 224 ~~~~v~~~~~~~~~~~~~~~~~~~--~~~~ 251 (798)
+.|.+.|...-.+-+...-....+ |++.
T Consensus 512 K~L~adf~~~deld~hr~~led~~ae~~~e 541 (718)
T KOG2416|consen 512 KHLIADFVRADELDKHRNGLEDLEAELPKE 541 (718)
T ss_pred ceeEeeecchhHHHHHhccchhcccccccc
Confidence 888888876554443333333333 5544
No 417
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.35 E-value=7.5 Score=40.37 Aligned_cols=132 Identities=11% Similarity=-0.008 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRA-RGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
....-|.-....||...|.+-+....+ ..-.|+... .........|+|+.++..+....+. +.-...+...+++..
T Consensus 291 ~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 291 EITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSL 367 (831)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhh
Confidence 334445556678888777665444444 322344443 3334456679999999988665543 333566788899999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003749 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID 433 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 433 (798)
.+.|++++|..+-+-|....++ +..+.....-..-..|-++++...++++...+.+
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred hchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 9999999999999888876554 3333333333344667889999999888876533
No 418
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.27 E-value=6.6 Score=39.35 Aligned_cols=20 Identities=10% Similarity=-0.037 Sum_probs=13.6
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 003749 724 DGWARRGDVWEAADLMQQMK 743 (798)
Q Consensus 724 ~~~~~~g~~~~A~~~~~~m~ 743 (798)
..+.+.+++++|.+.|+-..
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34556788888888877543
No 419
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.21 E-value=0.022 Score=55.40 Aligned_cols=80 Identities=24% Similarity=0.413 Sum_probs=62.1
Q ss_pred cceeecCCCccCchHHH---HHHhcccCcceEEEEecCCCC-CCCCcc--eEEEEeCChhHHHHHHHhcccCCeeeccee
Q 003749 152 GKIFVGNLPNWIKKHLV---MEFFRQFGPIKNVILIKGYNN-FEKNVG--FGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l---~~~f~~~g~v~~~~~~~~~~~-~~~~~g--~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~ 225 (798)
.-+||-+|+....++.+ .+.|.+||.|..|.+.++ .. ...+.| -++|+|+..+.|..||... +|+.++|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~-~S~~s~~~~~~s~yITy~~~eda~rci~~v--~g~~~dg~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKD-PSSSSSSGGTCSVYITYEEEEDADRCIDDV--DGFVDDGRA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCC-cccccCCCCCCcccccccchHhhhhHHHHh--hhHHhhhhh
Confidence 46788899887766654 368999999999999886 31 111111 3799999999999999999 999999999
Q ss_pred eeeeccccc
Q 003749 226 LTVKLDDGR 234 (798)
Q Consensus 226 ~~v~~~~~~ 234 (798)
++..+...+
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 887776554
No 420
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.19 E-value=6.8 Score=39.25 Aligned_cols=122 Identities=12% Similarity=0.167 Sum_probs=61.5
Q ss_pred HHcCChHHHHHHHHHHHHCC--CCCCHH------HHHHHHHHHHccC-ChHHHHHHHHHHHHc----C----CCCC----
Q 003749 307 ARRGDMHRARQTFENMRARG--IEPTLH------VYTNLIHAYAVGR-DMEEALSCVRKMKEE----G----IEMS---- 365 (798)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~--~~~~~~------~~~~ll~~~~~~g-~~~~A~~~~~~m~~~----g----~~~~---- 365 (798)
.+.|+.+.|..++.++.... ..|+.. .||.-...+ +.+ ++++|..++++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 36788888888888877643 122221 233333333 444 777777777665432 1 1111
Q ss_pred -HHHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 366 -LVTYSIIVGGFAKMGNAE---AADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 366 -~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 430 (798)
..++..++.+|...+..+ +|.++++.+... ......++..-+.++.+.++.+++.+++.+|+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 234445555555554433 344444444322 1112334434445555556666666666666654
No 421
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.19 E-value=0.35 Score=46.11 Aligned_cols=88 Identities=18% Similarity=0.328 Sum_probs=50.4
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003749 415 RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVS 494 (798)
Q Consensus 415 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 494 (798)
+.++-....++.|.+.|+..|..+|+.|++.+-+-. +.|... +....--|-+ +-+-+++++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv-fQ~~F~HYP~--QQ~C~I~vL 146 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV-FQKVFLHYPQ--QQNCAIKVL 146 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH-HHHHHhhCch--hhhHHHHHH
Confidence 455556666777888888888888887777653321 111111 1111111111 223456777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003749 495 KVMKSSGIKHNMKTYSMLINGFLKLKD 521 (798)
Q Consensus 495 ~~m~~~~~~~~~~~~~~ll~~~~~~~~ 521 (798)
++|...|+.||-.+-.+|++++.+.+.
T Consensus 147 eqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 147 EQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHcCCCCchHHHHHHHHHhccccc
Confidence 777777777777777777777765543
No 422
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.14 E-value=8.4 Score=40.09 Aligned_cols=160 Identities=10% Similarity=0.049 Sum_probs=86.7
Q ss_pred cchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 003749 257 STWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTN 336 (798)
Q Consensus 257 ~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 336 (798)
..|...+.++...|..+.... +-+.++..+.+.+- ...++-.+...|.+.|+.+.|-+++++++-.- ..+++.
T Consensus 4 f~hs~~Y~~~q~~F~~~v~~~--Dp~~l~~ll~~~Py-HidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~ 76 (360)
T PF04910_consen 4 FEHSKAYQEAQEQFYAAVQSH--DPNALINLLQKNPY-HIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHP 76 (360)
T ss_pred EeCCHHHHHHHHHHHHHHHcc--CHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHH
Confidence 345566788899998887653 33555555544332 34455566677889999999999888876420 011111
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-
Q 003749 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYS---IIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC- 412 (798)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~- 412 (798)
....+.....-..+.--|. ..-|-..|. ..|..+.+.|.+..|+++.+-+...+..-|......+|..|+
T Consensus 77 ~F~~~~~~~~~g~~rL~~~------~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~AL 150 (360)
T PF04910_consen 77 SFSPFRSNLTSGNCRLDYR------RPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYAL 150 (360)
T ss_pred HhhhhhcccccCccccCCc------cccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHH
Confidence 1111000000000000000 001222222 234456677777777777777777666556666666666654
Q ss_pred hcCChHHHHHHHHHHHH
Q 003749 413 QTRNMERAEALVRDMEE 429 (798)
Q Consensus 413 ~~g~~~~A~~~~~~m~~ 429 (798)
+.++++--+++.+....
T Consensus 151 rs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 151 RSRQYQWLIDFSESPLA 167 (360)
T ss_pred hcCCHHHHHHHHHhHhh
Confidence 66666666666665544
No 423
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.91 E-value=5.3 Score=36.97 Aligned_cols=65 Identities=17% Similarity=0.041 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (798)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 431 (798)
..+||.|.--+...|+++.|.+.|+...+.+...+ .++.+-...+.-.|++.-|.+-|...-+.+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHHHHHHHHhcC
Confidence 56788888888889999999999999888876533 333333344555788888888777776653
No 424
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.86 E-value=4 Score=36.27 Aligned_cols=126 Identities=9% Similarity=0.061 Sum_probs=89.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCC
Q 003749 306 YARRGDMHRARQTFENMRARGIEPTLH-VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLV---TYSIIVGGFAKMGN 381 (798)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---~~~~l~~~~~~~g~ 381 (798)
+++.|..++|+.-|..+.+.|...-.. ....+....+..|+-.+|...|+++-.....|-.. ...--.-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 356677889999999999886543222 22334456778899999999999987653333222 12222334667888
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 382 AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (798)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 431 (798)
++....-.+-+...+.+.-...-..|..+-.+.|++..|...|..+....
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 99988888877766666666777788888889999999999999887643
No 425
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.84 E-value=1 Score=43.09 Aligned_cols=71 Identities=24% Similarity=0.324 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 486 KVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKL----------------KDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549 (798)
Q Consensus 486 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 549 (798)
..+-....++.|.+.|+..|..+|+.||+.+-+. .+-+-++.++++|...|+.||-.+-..|+.
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 3444444555555555555555555555544322 122346667777777777777777777777
Q ss_pred HHHcCCC
Q 003749 550 AFCGMGN 556 (798)
Q Consensus 550 ~~~~~g~ 556 (798)
++.+.+.
T Consensus 167 ~FGr~~~ 173 (406)
T KOG3941|consen 167 AFGRWNF 173 (406)
T ss_pred Hhccccc
Confidence 7766654
No 426
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=93.77 E-value=7.7 Score=39.98 Aligned_cols=75 Identities=20% Similarity=0.193 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003749 649 YTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWAR 728 (798)
Q Consensus 649 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 728 (798)
...|+.-|...|+..+|...++++---- -....++.+++.+.-+.|+-..-+.++++.-..| ..|-|.|-++|.|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPf-FhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPF-FHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCc-chHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhh
Confidence 4456667777788888887777663221 1245667777777777777666666666666543 3455555555544
No 427
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.62 E-value=0.79 Score=44.90 Aligned_cols=79 Identities=16% Similarity=0.252 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 003749 681 VFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ-----EGVQPDVHTYT 755 (798)
Q Consensus 681 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~~~ 755 (798)
..++..++..+..+|+++.+...++++.... +-+...|..|+.+|.+.|+...|+..|+++.+ .|+.|-..+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3466778888888899999999998888876 67888889999999999999999988888765 58888888888
Q ss_pred HHHHH
Q 003749 756 SFINA 760 (798)
Q Consensus 756 ~l~~~ 760 (798)
.+..+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 77777
No 428
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.49 E-value=6.7 Score=36.81 Aligned_cols=21 Identities=24% Similarity=0.634 Sum_probs=12.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCC
Q 003749 518 KLKDWANVFAVFEDVMRDGLK 538 (798)
Q Consensus 518 ~~~~~~~a~~~~~~~~~~g~~ 538 (798)
..+++.+|+.+|+++.+....
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 445666666666666555443
No 429
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.44 E-value=0.23 Score=33.21 Aligned_cols=27 Identities=11% Similarity=0.369 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003749 369 YSIIVGGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
|..+...|.+.|++++|+++|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 430
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.29 E-value=6.7 Score=38.10 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 003749 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ-----EGVQPDVHTYT 755 (798)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~~~ 755 (798)
+++.....|.++|.+.+|..+.++....+ +.+...|-.|+..|+..||--.|.+-+++|.+ .|+.-|..+++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 55667788999999999999999999877 67888899999999999998888888887753 47776665543
No 431
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.15 E-value=0.9 Score=52.51 Aligned_cols=10 Identities=20% Similarity=0.102 Sum_probs=4.2
Q ss_pred cCcceEEEEe
Q 003749 175 FGPIKNVILI 184 (798)
Q Consensus 175 ~g~v~~~~~~ 184 (798)
+|....|+.+
T Consensus 578 lG~~~~V~a~ 587 (824)
T PRK07764 578 LGGDWQVEAV 587 (824)
T ss_pred hCCceEEEEE
Confidence 3444444443
No 432
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.06 E-value=2.4 Score=48.67 Aligned_cols=21 Identities=14% Similarity=0.138 Sum_probs=13.8
Q ss_pred HHHHHHcCChHHHHHHHHHHH
Q 003749 303 VNYYARRGDMHRARQTFENMR 323 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~ 323 (798)
|..+.+.+++++|+++...|.
T Consensus 1004 la~~i~~~~y~~a~~i~~~ia 1024 (1049)
T KOG0307|consen 1004 LAQSIKNRDYSEALQIHAQIA 1024 (1049)
T ss_pred HHHHHhhccHHHHHHHHHHHh
Confidence 444556677777777777666
No 433
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.00 E-value=1.5 Score=48.44 Aligned_cols=7 Identities=29% Similarity=0.425 Sum_probs=3.8
Q ss_pred EEEeCCh
Q 003749 198 FVIYDGP 204 (798)
Q Consensus 198 fv~f~~~ 204 (798)
||+|.+.
T Consensus 231 FV~fid~ 237 (887)
T KOG1985|consen 231 FVEFIDQ 237 (887)
T ss_pred eEEecCC
Confidence 5666543
No 434
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.94 E-value=22 Score=41.16 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHH---HHHHccCChHHHHHHHHHHHH
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHV---YTNLI---HAYAVGRDMEEALSCVRKMKE 359 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~ll---~~~~~~g~~~~A~~~~~~m~~ 359 (798)
+..=+..+.+...+++|+.+-+.....+ |...- +.... .-+..+|++++|+++|.++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~--p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPN--PKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCC--hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 6666777888888888888877665431 22221 11111 225567889999999988865
No 435
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.94 E-value=19 Score=40.71 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=37.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-------HHHHHHHHHHHHc
Q 003749 301 LMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDM-------EEALSCVRKMKEE 360 (798)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-------~~A~~~~~~m~~~ 360 (798)
.+|-.|.+.|++++|.++....... +......+-..+..|+...+- +....-|++..+.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 4677788999999999999554443 344556677888888765222 3455556665544
No 436
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.93 E-value=1.5 Score=40.28 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 003749 369 YSIIVGGFAKMGNAEAADHWFEEAKERHATL--NAIIYGNIIYAQCQTRNMERAEALVRDM 427 (798)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m 427 (798)
+..++..|++.|+.++|++.|.++.+....+ -...+..+|++....+++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444444555555555555555544432211 1223344444444555555444444433
No 437
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.63 E-value=0.47 Score=36.03 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=39.8
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhc
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (798)
..||+ .|.+....||.++|+.||.|. |..+.| .-|||...+.+.+..++..+
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d--------TSAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND--------TSAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEE-EEEECT--------TEEEEEECCCHHHHHHHHHH
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC--------CcEEEEeecHHHHHHHHHHh
Confidence 45555 999999999999999999975 545544 47999999999999999887
No 438
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.58 E-value=1 Score=47.92 Aligned_cols=149 Identities=11% Similarity=0.095 Sum_probs=91.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 003749 519 LKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEI 598 (798)
Q Consensus 519 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 598 (798)
.++++.|..++..+. ....+.++..+.+.|..++|+.+-- |... -.....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s~---------D~d~---rFelal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELST---------DPDQ---RFELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcCC---------Chhh---hhhhhhhcCcHHHHHHH
Confidence 455665555444332 2234456666677777777765432 1111 12234567788887777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003749 599 FDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLE 678 (798)
Q Consensus 599 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 678 (798)
..+.. +..-|..|.++....+++..|.+.|.+..+ |..|+-.+...|+-+....+-....+.|..
T Consensus 660 a~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~ 724 (794)
T KOG0276|consen 660 AVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN 724 (794)
T ss_pred HHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc
Confidence 65542 566788888888888888888887766543 556666777777766555555555555533
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003749 679 LDVFTYEALLKACCKSGRMQSALAVTKEM 707 (798)
Q Consensus 679 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (798)
|...-+|...|+++++.+++.+-
T Consensus 725 ------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 ------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ------chHHHHHHHcCCHHHHHHHHHhc
Confidence 33445677788888887777544
No 439
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.52 E-value=13 Score=37.56 Aligned_cols=150 Identities=18% Similarity=0.126 Sum_probs=83.0
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----c
Q 003749 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV----GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----M 379 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~ 379 (798)
..+++..+...+......+ +......+...|.. ..+..+|+++|..+.+.| .......|..+|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcc
Confidence 4556677777777776643 23444444444443 245777888888777765 34455556666665 3
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-------ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----
Q 003749 380 GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTR-------NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI---- 448 (798)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~---- 448 (798)
.+..+|..+|+++.+.|...-..+...+...|..-. +...|...+.++...+ +......|..+|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 477788888888877765432222333443333321 2235666666665554 33344444444422
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 003749 449 IGNEEKCLIVFERLKECG 466 (798)
Q Consensus 449 ~g~~~~A~~~~~~~~~~~ 466 (798)
..+..+|..+|.+..+.|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 235556666666665554
No 440
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.46 E-value=0.46 Score=36.18 Aligned_cols=59 Identities=14% Similarity=0.249 Sum_probs=35.7
Q ss_pred ccCchHHHHHHhcccCcc-----eEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 161 NWIKKHLVMEFFRQFGPI-----KNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 161 ~~~~~~~l~~~f~~~g~v-----~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
..++..+|..++..-+.| -.|+|.. .|.||+-.. +.+..++..| ++..+.|++++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~---------~~S~vev~~-~~a~~v~~~l--~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD---------NFSFVEVPE-EVAEKVLEAL--NGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S---------S-EEEEE-T-T-HHHHHHHH--TT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee---------eEEEEEECH-HHHHHHHHHh--cCCCCCCeeEEEEEC
Confidence 356778888888766444 4667754 499999954 6889999999 999999999999864
No 441
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.43 E-value=0.41 Score=32.00 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=9.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 003749 722 LIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 722 l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
+..+|.+.|++++|.++|+++++
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333444444444444444333
No 442
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.40 E-value=2.5 Score=48.47 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 003749 327 IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMK 358 (798)
Q Consensus 327 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 358 (798)
+.|.......-|..+.+.++|++|+.+...|.
T Consensus 993 LSp~~~~~L~~la~~i~~~~y~~a~~i~~~ia 1024 (1049)
T KOG0307|consen 993 LSPPITDGLHQLAQSIKNRDYSEALQIHAQIA 1024 (1049)
T ss_pred cChHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 34444444444555566677777777777766
No 443
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.39 E-value=2.9 Score=38.38 Aligned_cols=98 Identities=11% Similarity=0.094 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELD--VFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILI- 723 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~- 723 (798)
..+..+...|++.|+.++|++.|.++.+....+. ...+-.+|..+...+++..+...+.++...--.........-+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4677788888888888888888888887654433 3455677788888888888888877776432111111111111
Q ss_pred ----HHHHHcCCHHHHHHHHHHHHH
Q 003749 724 ----DGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 724 ----~~~~~~g~~~~A~~~~~~m~~ 744 (798)
-.+...|++.+|-++|-+...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 123457889998888777653
No 444
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.24 E-value=0.47 Score=43.41 Aligned_cols=61 Identities=20% Similarity=0.345 Sum_probs=47.0
Q ss_pred hHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccC--Ceeecceeeeeeccccc
Q 003749 165 KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD--GVEFHGRVLTVKLDDGR 234 (798)
Q Consensus 165 ~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~--~~~~~g~~~~v~~~~~~ 234 (798)
.+.|+++|..|+.+..+...+. -+-..|.|.+.+.|.+|...+ + +..+.|..+++.++..-
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s-------FrRi~v~f~~~~~A~~~r~~l--~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS-------FRRIRVVFESPESAQRARQLL--HWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT-------TTEEEEE-SSTTHHHHHHHTS--T--TSEETTEE-EEE----S
T ss_pred HHHHHHHHHhcCCceEEEEcCC-------CCEEEEEeCCHHHHHHHHHHh--cccccccCCCceEEEEcccc
Confidence 4689999999999999988876 466889999999999999988 8 89999999999887443
No 445
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.98 E-value=0.2 Score=31.22 Aligned_cols=31 Identities=32% Similarity=0.380 Sum_probs=18.4
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003749 705 KEMSAQKIPRNTFVYNILIDGWARRGDVWEAA 736 (798)
Q Consensus 705 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 736 (798)
++.++.+ +.|...|+.|..+|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444444 556666666666666666666664
No 446
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.95 E-value=26 Score=39.74 Aligned_cols=115 Identities=13% Similarity=0.064 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 003749 520 KDWANVFAVFEDVMRDG-LKPD--VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRAL 596 (798)
Q Consensus 520 ~~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 596 (798)
.+.+.|..++..+.... ...+ ..++..+.......+...++...+....... .+...+.-.+....+.++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 44466666666553322 1111 1223333333333222445555554433221 12233333344444666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 597 EIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEM 637 (798)
Q Consensus 597 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 637 (798)
..+..|....- -...-..-+..++...|+.++|..+|+.+
T Consensus 333 ~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 333 TWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66665543211 12233333444545566666666666654
No 447
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.79 E-value=3.6 Score=37.45 Aligned_cols=92 Identities=20% Similarity=0.154 Sum_probs=58.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIEPTL------HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
.+-+..+|++++|..-|..++.. .|.. +.|..-..++.+.+.++.|++-..+.++.+.. ......--..+|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeay 178 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAY 178 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHH
Confidence 34566788888888888888775 2222 23445556677777788887777777776421 222333334567
Q ss_pred HhcCCHHHHHHHHHHHHhcCC
Q 003749 377 AKMGNAEAADHWFEEAKERHA 397 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~ 397 (798)
-+..++++|++-|.++.+.++
T Consensus 179 ek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCc
Confidence 777777777777777776643
No 448
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.71 E-value=1.6 Score=42.84 Aligned_cols=76 Identities=13% Similarity=0.168 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCcCHHHHHHH
Q 003749 403 IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKE-----CGFSPSIISYGCL 477 (798)
Q Consensus 403 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l 477 (798)
++..++..+...|+++.+.+.+++++... +-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44555566666666777777777766654 45566677777777777777777776666654 2555555544444
Q ss_pred HH
Q 003749 478 IN 479 (798)
Q Consensus 478 i~ 479 (798)
..
T Consensus 234 ~~ 235 (280)
T COG3629 234 EE 235 (280)
T ss_pred HH
Confidence 33
No 449
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.70 E-value=8.6 Score=34.11 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=9.1
Q ss_pred HHHcCChHHHHHHHHHHHh
Q 003749 691 CCKSGRMQSALAVTKEMSA 709 (798)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~ 709 (798)
+...|+|.+|+.+|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 4444455555555554443
No 450
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.68 E-value=2.8 Score=41.01 Aligned_cols=98 Identities=19% Similarity=0.193 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003749 610 TVHTFNALILGLVEKRQMEKAIEILDEMTLAG---IS--PNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTY 684 (798)
Q Consensus 610 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~---~~--p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 684 (798)
...+...++..-....+.++++.++-++.... .. ...++|-.++ . .-+.++++.++..=+..|+-+|.+++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll---l-ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL---L-KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH---H-ccChHHHHHHHhCcchhccccchhhH
Confidence 33444455554455666777777666655431 11 1222322222 2 23456777777666677777777777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003749 685 EALLKACCKSGRMQSALAVTKEMSAQK 711 (798)
Q Consensus 685 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (798)
+.||+.+.+.+++.+|..+.-.|+..+
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 777777777777777777666665443
No 451
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.65 E-value=9.7 Score=39.83 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACC 692 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 692 (798)
.+||+=+ .|...|+.-.|.+.|.+.... +.-+...|-.|..+|.
T Consensus 337 ilYNcG~-~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 337 ILYNCGL-LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred hHHhhhH-HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 3455443 566778888888888877764 3457778888888775
No 452
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.52 E-value=0.42 Score=30.23 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 369 YSIIVGGFAKMGNAEAADHWFEEA 392 (798)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~ 392 (798)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666663
No 453
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=91.35 E-value=0.31 Score=48.27 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=58.1
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCC--CcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEK--NVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~--~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.|-|.||.+.++.+.++.+|.-.|.|.++++......... ..-.|||-|.|...+..|-.. .++.+-++.|.|-.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhL---tntvfvdraliv~p 85 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHL---TNTVFVDRALIVRP 85 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhh---ccceeeeeeEEEEe
Confidence 7899999999999999999999999999988753111111 145899999999999888753 45666666666644
No 454
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=91.35 E-value=0.86 Score=32.81 Aligned_cols=54 Identities=9% Similarity=0.172 Sum_probs=43.1
Q ss_pred cceeecCCCccCchHHHHHHhccc---CcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQF---GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~---g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (798)
.+|+|.++. +.+-++++.+|..| .....|..+-| .-|=|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD--------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD--------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC--------CcEEEEECCHHHHHHHHHcC
Confidence 378999985 57888999999988 23457888876 24678999999999999764
No 455
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.35 E-value=21 Score=37.48 Aligned_cols=175 Identities=15% Similarity=0.107 Sum_probs=97.2
Q ss_pred HcCCChHHHHHHHHHHHHCCCC-CC-------cccHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHH
Q 003749 552 CGMGNMDRAIHIVKEMQKERHR-PT-------SRTFMPIIHG-FARAGEMKRALEIFDMMRRSGCIPTVHTF--NALILG 620 (798)
Q Consensus 552 ~~~g~~~~A~~~~~~~~~~~~~-~~-------~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--~~li~~ 620 (798)
.-.|+..+|++-+.+|...... |. ......++.. +...+.++.|+.-|..+.+.-..-|...+ ..+...
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 3468999999999888764321 22 1111223333 34568899999988877654222233332 334557
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH------H--HH--HHHhcCChHHHHHHHHHHHHcCCC-----CCHHHHH
Q 003749 621 LVEKRQMEKAIEILDEMTLAGISPNEHTYTT------I--MH--GYASLGDTGKAFEYFTKLRNEGLE-----LDVFTYE 685 (798)
Q Consensus 621 ~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~------l--i~--~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~ 685 (798)
|.+.++.+.-.++++.+-- ++..++.. + +. .....+++.+|..++.+..+..-. .......
T Consensus 414 YL~~~~~ed~y~~ld~i~p----~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~Lv 489 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGP----LNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLV 489 (629)
T ss_pred HHHhccHHHHHHHHHhcCC----CCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Confidence 8888887777777665432 22222211 1 11 124678999999999888765311 1222334
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh--CCCCCCHHH--H--HHHHHHHHHcCC
Q 003749 686 ALLKACCKSGRMQSALAVTKEMSA--QKIPRNTFV--Y--NILIDGWARRGD 731 (798)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~--~--~~l~~~~~~~g~ 731 (798)
.|...+.-.|+-.++.....-... .+ -+|..+ | ..+-+.|...|+
T Consensus 490 LLs~v~lslgn~~es~nmvrpamqlAkK-i~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 490 LLSHVFLSLGNTVESRNMVRPAMQLAKK-IPDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHhcchHHHHhccchHHHHHhc-CCCchHHHHHHHHHHHHHHHhCc
Confidence 444555677777777776654432 22 244432 2 334444555565
No 456
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.32 E-value=4.8 Score=44.82 Aligned_cols=8 Identities=38% Similarity=0.551 Sum_probs=3.5
Q ss_pred ceeeeeec
Q 003749 223 GRVLTVKL 230 (798)
Q Consensus 223 g~~~~v~~ 230 (798)
||+=++++
T Consensus 238 gr~WrCNl 245 (887)
T KOG1985|consen 238 GRRWRCNL 245 (887)
T ss_pred Cceeeech
Confidence 44444433
No 457
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=91.28 E-value=1.4 Score=41.68 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=6.5
Q ss_pred ccceeecCCCc
Q 003749 151 EGKIFVGNLPN 161 (798)
Q Consensus 151 ~~~~~v~nl~~ 161 (798)
.++|.+|.|..
T Consensus 161 dt~v~lgrld~ 171 (297)
T PF07174_consen 161 DTSVVLGRLDL 171 (297)
T ss_pred CceEEeccccc
Confidence 34666666654
No 458
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.28 E-value=14 Score=35.38 Aligned_cols=232 Identities=10% Similarity=0.110 Sum_probs=0.0
Q ss_pred HcCCCCChhhHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHC----
Q 003749 429 EEGIDAPIDIYHMMMDGY-TIIGNEEKCLIVFERLKECGFSPSIISYGCL---INLYTKIGKVSKALEVSKVMKSS---- 500 (798)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~---- 500 (798)
+.+-+||+..-|..-..- .+..+.++|+.-|.+.++........-|.+| |..+.+.|++++..+.++++...
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 003749 501 -GIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD-----GLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP 574 (798)
Q Consensus 501 -~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 574 (798)
--..+..+.|.+++.....++.+-....|+.-++. +-..---|-..|...|...+.+.+..++++++......-
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Q ss_pred Cc-----------ccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHH
Q 003749 575 TS-----------RTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALIL-----GLVEKRQMEKAIEILDEMT 638 (798)
Q Consensus 575 ~~-----------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~-----~~~~~~~~~~A~~~~~~m~ 638 (798)
+. ..|..-|..|....+-.+...++++.+......-....--+|. +..+.|++++|..-|-+.-
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Q ss_pred HC------CCCCCHHHHHHHHHHHHhcC
Q 003749 639 LA------GISPNEHTYTTIMHGYASLG 660 (798)
Q Consensus 639 ~~------~~~p~~~t~~~li~~~~~~g 660 (798)
+. .-+..-.-|-.|...+.+.|
T Consensus 259 KNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 259 KNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred hcccccCCcchhHHHHHHHHHHHHHHcC
No 459
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.18 E-value=55 Score=41.93 Aligned_cols=320 Identities=12% Similarity=0.068 Sum_probs=169.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHH----HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 003749 406 NIIYAQCQTRNMERAEALVRDM----EEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLY 481 (798)
Q Consensus 406 ~l~~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 481 (798)
.+..+-.+++.+.+|...++.- .+.. .....+..+...|...++.+....+...-.. +.. ...-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHH
Confidence 4555666788888888888873 2221 1233455555689999999888777764221 122 22345566
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHcCCChHHH
Q 003749 482 TKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNI-IRAFCGMGNMDRA 560 (798)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A 560 (798)
...|++..|...|+.+...+ ++...+++-++......+.++.++...+..... .......++++ +.+-.+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 77899999999999998864 233556676666666677777777766555443 22233333333 3444677777777
Q ss_pred HHHHHHHHHCCCCCCcccHHHH--HHHHHhcC--CHHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHhcCCH
Q 003749 561 IHIVKEMQKERHRPTSRTFMPI--IHGFARAG--EMKRALEIFDMMRRSGCI---------PTVHTFNALILGLVEKRQM 627 (798)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~--~~~~a~~~~~~~~~~~~~---------p~~~~~~~li~~~~~~~~~ 627 (798)
...+. .. +..+|... +..+.+.. +.-.-.+..+.+++.-+. --...|..++..+....-
T Consensus 1538 e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el- 1609 (2382)
T KOG0890|consen 1538 ESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL- 1609 (2382)
T ss_pred hhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-
Confidence 76665 11 23333332 22322222 211111233222221111 011233333332222111
Q ss_pred HHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-Hc----CCC-CCHHHHHHHHHHHHHcCChHHH
Q 003749 628 EKAIEILDEMT-LAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLR-NE----GLE-LDVFTYEALLKACCKSGRMQSA 700 (798)
Q Consensus 628 ~~A~~~~~~m~-~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~-~~----~~~-~~~~~~~~l~~~~~~~g~~~~A 700 (798)
+...+.+.... .....-+...|..-+..-....+..+-+-.+++.. .. +.+ --...|....+...+.|.++.|
T Consensus 1610 ~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1610 ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 11111111100 00111122233333322222222233222222222 11 221 1245677777788889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003749 701 LAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEG 746 (798)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 746 (798)
...+-.+.+.. -...+--..+.+...|+...|+.++++-.+..
T Consensus 1690 ~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1690 QNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 98887777654 34556667788889999999999999988653
No 460
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.80 E-value=0.58 Score=29.56 Aligned_cols=26 Identities=23% Similarity=0.196 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003749 718 VYNILIDGWARRGDVWEAADLMQQMK 743 (798)
Q Consensus 718 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (798)
+|+.|..+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888854
No 461
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.60 E-value=2 Score=42.41 Aligned_cols=88 Identities=17% Similarity=0.109 Sum_probs=41.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (798)
-|.++|++++|+.+|...+... +.|.+++.+-..+|.+.++|..|+.-....+..+ ..-+..|..-+.+-...|+..+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 3555666666666665555432 2255555555555666666555555554444432 1112223333333333444444
Q ss_pred HHHHHHHHHH
Q 003749 455 CLIVFERLKE 464 (798)
Q Consensus 455 A~~~~~~~~~ 464 (798)
|.+-++..++
T Consensus 184 AKkD~E~vL~ 193 (536)
T KOG4648|consen 184 AKKDCETVLA 193 (536)
T ss_pred HHHhHHHHHh
Confidence 4444444443
No 462
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.59 E-value=24 Score=36.77 Aligned_cols=283 Identities=10% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCChhhHHHHHHHHH
Q 003749 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHA----TLNAIIYGNIIYAQC 412 (798)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~ 412 (798)
...+..+.|+|+...+.......... +...+..+... +.++++++....+++...-. ......|........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~~~--~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNEDSP--EYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCCCh--hHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHHcCCHHHH
Q 003749 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC--GFSPSIISYGCLINLYTKIGKVSKA 490 (798)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A 490 (798)
+...+.|..++.+-....... ......+++.+.++ ....+..+|..++..-.-.-..-
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~------------------~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~-- 139 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQN------------------PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLI-- 139 (352)
T ss_pred HHhHHHHHHHHHHHHHhhccc------------------HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcc--
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 003749 491 LEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKP---DVVLYNNIIRAFCGMGNMDRAIHIVKEM 567 (798)
Q Consensus 491 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~ 567 (798)
........+|..++..+.+.|.++.|...+..+...+... +......-+..+...|+..+|+..++..
T Consensus 140 ---------~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 140 ---------LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred ---------cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Q ss_pred HHCCCCCC---------------------------------cccHHHHHHHHHhc------CCHHHHHHHHHHHHHcCCC
Q 003749 568 QKERHRPT---------------------------------SRTFMPIIHGFARA------GEMKRALEIFDMMRRSGCI 608 (798)
Q Consensus 568 ~~~~~~~~---------------------------------~~~~~~li~~~~~~------~~~~~a~~~~~~~~~~~~~ 608 (798)
........ ...+..+..-+... +..+++...|..+.+....
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 290 (352)
T PF02259_consen 211 LKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS 290 (352)
T ss_pred HHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-----------------HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003749 609 PTVHTFNALILGLVEKRQMEK-----------------AIEILDEMTLAGISPNEHTYTTIMHGY 656 (798)
Q Consensus 609 p~~~~~~~li~~~~~~~~~~~-----------------A~~~~~~m~~~~~~p~~~t~~~li~~~ 656 (798)
....|..+...+.+.-..+. |+..|-+....|.. ..+..+.+.+
T Consensus 291 -~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~---~~~~~~~RlL 351 (352)
T PF02259_consen 291 -WEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK---YVRQDLPRLL 351 (352)
T ss_pred -HHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC---chHHHhhHhc
No 463
>PRK11901 hypothetical protein; Reviewed
Probab=90.34 E-value=20 Score=35.60 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=36.4
Q ss_pred CCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEE--EeCChhHHHHHHHhc
Q 003749 158 NLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFV--IYDGPAAEKSAMKAV 214 (798)
Q Consensus 158 nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv--~f~~~~~a~~a~~~~ 214 (798)
.|.---+++.|+.+.++.+ +.++++..- .++|+. -|..| +|.+.++|+.|+..|
T Consensus 249 QL~Aas~~~~L~~f~~~~~-L~~~~VYqT-~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sL 304 (327)
T PRK11901 249 QLSSASRSDTLNAYAKKQN-LSHYHVYET-KRDGKP-WYVLVSGNYASSAEAKRAIATL 304 (327)
T ss_pred EeecCCCHHHHHHHHHHcC-cCceEEEEE-EECCce-EEEEEecCcCCHHHHHHHHHhC
Confidence 3333456778888877775 456666654 444544 34433 799999999999988
No 464
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.30 E-value=13 Score=33.39 Aligned_cols=56 Identities=5% Similarity=0.015 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 440 HMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKS 499 (798)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (798)
..+++.+...|++-+|+++..+.... +......++.+..+.++...-..+|+-..+
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555666666666655543221 222233445555555554444444444443
No 465
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.18 E-value=5.5 Score=36.33 Aligned_cols=90 Identities=18% Similarity=0.053 Sum_probs=52.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003749 621 LVEKRQMEKAIEILDEMTLAGIS----PNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGR 696 (798)
Q Consensus 621 ~~~~~~~~~A~~~~~~m~~~~~~----p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 696 (798)
++++|++++|..-|.+.++.-.. -..+.|..-..++.+++.++.|++-..+.++.+.. .......-..+|-+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhh
Confidence 45666666666666666554111 11234555555666777777777777777666542 22233333445666667
Q ss_pred hHHHHHHHHHHHhCC
Q 003749 697 MQSALAVTKEMSAQK 711 (798)
Q Consensus 697 ~~~A~~~~~~~~~~~ 711 (798)
+++|++=++++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 777777777777654
No 466
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.15 E-value=3.6 Score=40.30 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 593 KRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEM 637 (798)
Q Consensus 593 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 637 (798)
++++.++..-+..|+.+|..+++.+|+.+.+.+++.+|..+.-.|
T Consensus 117 q~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 117 QKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred HHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 344444444444444455555555555555555554444444443
No 467
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.62 E-value=22 Score=34.81 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 475 GCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVM 533 (798)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (798)
+...+.|..+|.+.+|.++.++....+ +.+...+-.|+..+...||--.+.+-++.+.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344567778888888888888877754 4566777777888888887777766666554
No 468
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=89.59 E-value=0.83 Score=38.56 Aligned_cols=69 Identities=20% Similarity=0.270 Sum_probs=49.5
Q ss_pred cceeecCCCccC----chHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 152 GKIFVGNLPNWI----KKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 152 ~~~~v~nl~~~~----~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
.+|.|.=|..++ +-..+...++.||+|.+|...- +--|.|.|.|..+|=+|+.+. +...-|..+.
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--------rqsavVvF~d~~SAC~Av~Af---~s~~pgtm~q 155 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--------RQSAVVVFKDITSACKAVSAF---QSRAPGTMFQ 155 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--------CceEEEEehhhHHHHHHHHhh---cCCCCCceEE
Confidence 367776443333 3345566778999999997753 457999999999999999987 3355677777
Q ss_pred eecc
Q 003749 228 VKLD 231 (798)
Q Consensus 228 v~~~ 231 (798)
+.|-
T Consensus 156 CsWq 159 (166)
T PF15023_consen 156 CSWQ 159 (166)
T ss_pred eecc
Confidence 6664
No 469
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.57 E-value=43 Score=38.20 Aligned_cols=185 Identities=10% Similarity=0.140 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 473 SYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFC 552 (798)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 552 (798)
.+.+....+...|+.+++..+-.-|.. |..++..+.+.+.+++|++++..-. +..+.....-.+
T Consensus 506 nretv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~------~~el~yk~ap~L- 569 (911)
T KOG2034|consen 506 NRETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQR------NPELFYKYAPEL- 569 (911)
T ss_pred hHHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhcc------chhhHHHhhhHH-
Confidence 344445566677777777665554443 5567777888888888888775531 222111111111
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003749 553 GMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARA---GEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEK 629 (798)
Q Consensus 553 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 629 (798)
......+....+..+... ........++..+.+. .....+...++-....-..-+...+|.++..|++..+-+.
T Consensus 570 i~~~p~~tV~~wm~~~d~---~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~l 646 (911)
T KOG2034|consen 570 ITHSPKETVSAWMAQKDL---DPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDL 646 (911)
T ss_pred HhcCcHHHHHHHHHcccc---CchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccch
Confidence 112233333333333222 2333344445444444 2334455544444433223478888888888877655333
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHcCCC
Q 003749 630 AIEILDEMTLAGISPNEHTYTTIMHGYASLGD------TGKAFEYFTKLRNEGLE 678 (798)
Q Consensus 630 A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~------~~~A~~~~~~~~~~~~~ 678 (798)
...++.....+-. ...-....++.|.+.+. +..+.++|.++++..+.
T Consensus 647 -l~~le~~~~~~~~-~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL~ 699 (911)
T KOG2034|consen 647 -LLYLEIIKFMKSR-VHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDLALQ 699 (911)
T ss_pred -HHHHHHHhhcccc-ceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHHHhh
Confidence 3333332221101 22233445556665553 44455666666555433
No 470
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.55 E-value=15 Score=32.72 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=21.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 430 (798)
+.++.+++..+++.+....+. ....-..-...+...|++.+|..+|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 344555555555554443221 1111112223344555555555555554443
No 471
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.47 E-value=22 Score=34.58 Aligned_cols=295 Identities=12% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 003749 407 IIYAQCQTRNMERAEALVRDMEEEGIDAP-------IDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLIN 479 (798)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 479 (798)
+.+-..+.+++++|+..+.++...|+..+ ..+...+...|...|++..-.+......+.-..-...--..+++
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHH
Q 003749 480 LYTKI-----GKVSKALEVSKVMKSSGIKHNMKTYSM-----LINGFLKLKDWANVFAVFEDVMRD----GLKPDVVLYN 545 (798)
Q Consensus 480 ~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~ 545 (798)
.+... ..++..+.+....++...+-.-..... ++..+.+.|.+.+|+.+...+... +-+++..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Q ss_pred HH-HHHHHcCCChHHHHHHHHHHHHCC----CCCCcccHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 546 NI-IRAFCGMGNMDRAIHIVKEMQKER----HRPTSRTFMPIIHG--FARAGEMKRALEIFDMMRRSGCIPTVHTFNALI 618 (798)
Q Consensus 546 ~l-i~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li 618 (798)
.+ -.+|.+..+..++..-+....... ++|-...-.-|+++ .|...++.-|...|-+..+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E-------------- 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE-------------- 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh--------------
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--C
Q 003749 619 LGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG--R 696 (798)
Q Consensus 619 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~ 696 (798)
+|.....-.+|...++-|+-.. .|++.-...+..-.+...++.....+++ ....+..+|.... +
T Consensus 235 -gft~l~~d~kAc~sLkYmlLSk---------IMlN~~~evk~vl~~K~t~~~y~~r~I~----am~avaea~~NRsL~d 300 (421)
T COG5159 235 -GFTLLKMDVKACVSLKYMLLSK---------IMLNRREEVKAVLRNKNTLKHYDDRMIR----AMLAVAEAFGNRSLKD 300 (421)
T ss_pred -ccccccchHHHHHHHHHHHHHH---------HHHhhHHHHHHHHccchhHhhhhhhhHH----HHHHHHHHhCCCcHhh
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 003749 697 MQSALAVTKEMSAQKIPRNTFVYNILIDGWARRG 730 (798)
Q Consensus 697 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 730 (798)
++.|+.-++.-...+ +--..+++.|-+.+...+
T Consensus 301 f~~aL~qY~~el~~D-~~iRsHl~~LYD~LLe~N 333 (421)
T COG5159 301 FSDALAQYSDELHQD-SFIRSHLQYLYDVLLEKN 333 (421)
T ss_pred HHHHHHHhhHHhccC-HHHHHHHHHHHHHHHHhh
No 472
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.32 E-value=1.1 Score=49.42 Aligned_cols=77 Identities=13% Similarity=0.217 Sum_probs=66.1
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeee--cceeeeeec
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF--HGRVLTVKL 230 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~--~g~~~~v~~ 230 (798)
+.++-|..-..+...|..+|++||.|.+.+..+| -..+.|+|.+.++|..|++++ +|+.+ .|-+.+|.+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-------~N~alvs~~s~~sai~a~dAl--~gkevs~~g~Ps~V~~ 370 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-------LNMALVSFSSVESAILALDAL--QGKEVSVTGAPSRVSF 370 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc-------ccchhhhhHHHHHHHHhhhhh--cCCcccccCCceeEEe
Confidence 5666777778889999999999999999999887 568999999999999999999 88875 488999999
Q ss_pred ccccchhh
Q 003749 231 DDGRRLKN 238 (798)
Q Consensus 231 ~~~~~~~~ 238 (798)
++...+..
T Consensus 371 ak~~~~~e 378 (1007)
T KOG4574|consen 371 AKTLPMYE 378 (1007)
T ss_pred cccccccc
Confidence 88665443
No 473
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.03 E-value=3.4 Score=37.22 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=51.0
Q ss_pred hhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHc-----------CChHHHHHHHHHHHHCCCCC
Q 003749 261 KEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARR-----------GDMHRARQTFENMRARGIEP 329 (798)
Q Consensus 261 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~~ 329 (798)
...++|+..|++++..+|..+.++ ..+.++|... ..+++|.+.|+++... .|
T Consensus 49 ~miedAisK~eeAL~I~P~~hdAl---------------w~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P 111 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPNKHDAL---------------WCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DP 111 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---------------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---T
T ss_pred HHHHHHHHHHHHHHhcCCchHHHH---------------HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CC
Confidence 455899999999999999854333 3333333222 2266777777777776 78
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGI 362 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 362 (798)
+..+|+.-+.+.. +|-+++.++.+.+.
T Consensus 112 ~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 112 NNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp T-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred CcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 8888888888774 36677777776653
No 474
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=88.95 E-value=16 Score=40.91 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=18.7
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMR 323 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~ 323 (798)
..-|. .+..+.-.|.++.|.+++....
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 45565 6788888999999998885433
No 475
>PRK09687 putative lyase; Provisional
Probab=88.55 E-value=28 Score=34.77 Aligned_cols=81 Identities=5% Similarity=-0.089 Sum_probs=42.0
Q ss_pred CCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh----HHHHHHHHHHHHcCCCCCHHHH
Q 003749 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDM----EEALSCVRKMKEEGIEMSLVTY 369 (798)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~----~~A~~~~~~m~~~g~~~~~~~~ 369 (798)
.+.......+..+...|. .++...+..+.+. .|...-...+.++...|+. .+++.++..+... .++..+.
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 344444555555655554 3344444444332 3555556666666666653 4566666655332 3455555
Q ss_pred HHHHHHHHhcC
Q 003749 370 SIIVGGFAKMG 380 (798)
Q Consensus 370 ~~l~~~~~~~g 380 (798)
...+.++...+
T Consensus 109 ~~A~~aLG~~~ 119 (280)
T PRK09687 109 ASAINATGHRC 119 (280)
T ss_pred HHHHHHHhccc
Confidence 55555555443
No 476
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=88.51 E-value=8.1 Score=40.06 Aligned_cols=164 Identities=18% Similarity=0.220 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------------------------------------
Q 003749 10 PHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEP---------------------------------------- 49 (798)
Q Consensus 10 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ppp~~~~p---------------------------------------- 49 (798)
|.-.|+|.++...++-.++....++.+..|.+.+-.||..
T Consensus 92 ~~rAP~P~~T~~~~~~~~T~~~~~~~~~~P~~~~V~PP~~~~~~~~~~~t~s~~~~~~~s~~~~~~k~~F~~~~~~AE~~ 171 (817)
T KOG1925|consen 92 PARAPEPGPTGPASPVGPTSSTGPALLTGPASSPVGPPSGLQASVNLFPTISVAPSADTSSERSIYKARFLENVAAAETE 171 (817)
T ss_pred cccCCCCCCCCCCCCCCCcccCCccccCCCCCCCCCCchhhhhhccCCchhhhhcccchhhhhhhHHhHHHhhhHHHHHH
Q ss_pred -----------------------CCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCC
Q 003749 50 -----------------------HNLHRPPKSSRPTRSKIPK----NPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSP 102 (798)
Q Consensus 50 -----------------------~~~~~~~~~~~~~~~~p~~----~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~p 102 (798)
....+...|..-.+..+.+ ......++...-|++|++|..-|...-...+.||
T Consensus 172 ~~~A~~~~~~~~L~~~~~~~~~~~~~~~~~~P~~~~~~s~~~~~~~~~~R~~~~~~~~P~~P~~P~~~P~~~~L~~GvPP 251 (817)
T KOG1925|consen 172 KQVALAQGRAETLAGAMPNEAGGDADSPETAPAARTPQSPAPCVLLRAQRSLAPEPKEPLIPASPKELPTRDFLLSGVPP 251 (817)
T ss_pred HHHHHHhcccccccccCcccccCCCCCcccChHhhCcCCCchHHHHhhhhcCCCCCCCCCCCCChhccCCchhhhcCCCC
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CccCcchhhhcccccceeecCCCccCchHHHHHHhc
Q 003749 103 PPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSS------SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFR 173 (798)
Q Consensus 103 pppp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~ 173 (798)
|||-.+-|||+++..+-+..-+.....+.....-. ......+....++..++|-.==+-.++-..|..+|.
T Consensus 252 PPP~G~~PPPPP~~~~L~~~v~~~~~~~~~r~~~KL~Wr~~~~~~~~Gv~~~r~~~t~W~s~D~~~~D~~r~~~LFE 328 (817)
T KOG1925|consen 252 PPPKGPFPPPPPLAAPLPHSVPDSSALPTKRKTVKLFWRDVKLAGGHGVSASRPCATLWASLDPVSVDTARLEHLFE 328 (817)
T ss_pred CCCCCCCCCCCCCcccCcCCCCCcccccccCceeEEEeecceecCCCCCccccccchhhhccCcceecHHHHHHHHH
No 477
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.50 E-value=1.2 Score=27.54 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 717 FVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 717 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
.+|..++.+|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566666666666677777766666665
No 478
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=88.49 E-value=16 Score=42.71 Aligned_cols=129 Identities=19% Similarity=0.186 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCC
Q 003749 12 FPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPP--SHS 89 (798)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ppp~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~p~~p--~~~ 89 (798)
.|.+|.=.++.+.=.|++++-++..|.-.|..|.-.|..|..+|..|.-.|.+|.-.|.++.-.|..|.=.|..| .|+
T Consensus 1474 sptspsysptspsysptspsysptspsysptspsysptspsysptspsysptspsysptspsysptspsysptspsyspt 1553 (1605)
T KOG0260|consen 1474 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1553 (1605)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 003749 90 LSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLA 140 (798)
Q Consensus 90 ~~~~~~~~~~~~ppppp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (798)
-|+-.+.+|.-.|..|.-.|..|.-...+.-++..+.-.+..+.-...+..
T Consensus 1554 spsysptsp~ysptspsysptspsys~~~~ysp~sp~ysptsp~ysp~sps 1604 (1605)
T KOG0260|consen 1554 SPSYSPTSPSYSPTSPSYSPTSPSYSTSPSYSPTSPSYSPTSPSYSPTSPS 1604 (1605)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCC
No 479
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.43 E-value=24 Score=33.87 Aligned_cols=274 Identities=13% Similarity=0.126 Sum_probs=0.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHcC
Q 003749 483 KIGKVSKALEVSKVMKSSGIKHNMKTYSML---INGFLKLKDWANVFAVFEDVMRD-----GLKPDVVLYNNIIRAFCGM 554 (798)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~~~~~ 554 (798)
+....++|+.-|.+..+.......+-|.+| +..+.+.+++++....|.+++.- --.-..-+.|+++......
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Q ss_pred CChHHHHHHHHHHHH-----CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHH
Q 003749 555 GNMDRAIHIVKEMQK-----ERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPT-----------VHTFNALI 618 (798)
Q Consensus 555 g~~~~A~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-----------~~~~~~li 618 (798)
.+.+--...|+.-.. .+-...-.+-+.|...|...+++.+..++++++......-+ ...|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcCChHHHHHHHHHHHHc------CCCCCHHHHHHH
Q 003749 619 LGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYA-----SLGDTGKAFEYFTKLRNE------GLELDVFTYEAL 687 (798)
Q Consensus 619 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~-----~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l 687 (798)
..|....+-.+...++++.+......-......+|+-|. +.|.+++|..-|-++.+. .-+....-|..|
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Q ss_pred HHHHHHcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003749 688 LKACCKSG--RMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSK 763 (798)
Q Consensus 688 ~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~ 763 (798)
..++.+.| -++. +++.-.+-.|.+...+.|+.+|... +..+-.++++.-... +..|+.+-+++=+.+.+
T Consensus 279 ANMLmkS~iNPFDs-----QEAKPyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il~~~~~~-IM~DpFIReh~EdLl~n 349 (440)
T KOG1464|consen 279 ANMLMKSGINPFDS-----QEAKPYKNDPEILAMTNLVAAYQNN-DIIEFERILKSNRSN-IMDDPFIREHIEDLLRN 349 (440)
T ss_pred HHHHHHcCCCCCcc-----cccCCCCCCHHHHHHHHHHHHHhcc-cHHHHHHHHHhhhcc-ccccHHHHHHHHHHHHH
No 480
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.22 E-value=21 Score=32.80 Aligned_cols=177 Identities=12% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 003749 488 SKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEM 567 (798)
Q Consensus 488 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 567 (798)
++...+-+..++.|...-......+.-.+ .+++|..-......--...|..++.......- +.....+++
T Consensus 9 qql~~ik~wwkeNGk~li~gviLg~~~lf--------GW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~--~~~~~~ekf 78 (207)
T COG2976 9 QQLEAIKDWWKENGKALIVGVILGLGGLF--------GWRYWQSHQVEQAQEASAQYQNAIKAVQAKKP--KSIAAAEKF 78 (207)
T ss_pred HHHHHHHHHHHHCCchhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHH
Q ss_pred HHCCCCCCcccHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHC
Q 003749 568 QKERHRPTSRTFMPIIHG--FARAGEMKRALEIFDMMRRSGCIPTVHTFNALIL-----GLVEKRQMEKAIEILDEMTLA 640 (798)
Q Consensus 568 ~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~-----~~~~~~~~~~A~~~~~~m~~~ 640 (798)
......-....+.+|.-+ +...+++++|+..++..... +....+..++. .....|.+|+|+++++...+.
T Consensus 79 ~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~ 155 (207)
T COG2976 79 VQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE 155 (207)
T ss_pred HhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003749 641 GISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLEL 679 (798)
Q Consensus 641 ~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 679 (798)
.-.......-.+++...|+-++|..-|++.++.+..+
T Consensus 156 --~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 156 --SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred --cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
No 481
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.19 E-value=28 Score=34.28 Aligned_cols=170 Identities=9% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh--cCChHHHHHHH
Q 003749 593 KRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTL-AGISPNEHTYTTIMHGYAS--LGDTGKAFEYF 669 (798)
Q Consensus 593 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~~~~p~~~t~~~li~~~~~--~g~~~~A~~~~ 669 (798)
++-..+++-....-..-...-|..|+ .++..+.+|+++|+...- ..+--|......+++.... ......-.++.
T Consensus 113 ~Dli~FL~~~i~~~~~~k~~~Y~~LV---k~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV 189 (292)
T PF13929_consen 113 EDLISFLKLVIINLSSNKSFNYWDLV---KRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVV 189 (292)
T ss_pred HHHHHHHHHHHhccccccchHHHHHH---HhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHH
Q ss_pred HHHHHc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----H
Q 003749 670 TKLRNE-GLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ-KIPRNTFVYNILIDGWARRGDVWEAADLMQQ-----M 742 (798)
Q Consensus 670 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----m 742 (798)
+.+... +-.++..+...++..+++.+++..-.++|+..... +...|...|...|+.....|+..-..+++++ +
T Consensus 190 ~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwi 269 (292)
T PF13929_consen 190 DFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWI 269 (292)
T ss_pred HHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEe
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcC
Q 003749 743 KQEGVQPDVHTYTSFINACSKAG 765 (798)
Q Consensus 743 ~~~g~~pd~~~~~~l~~~~~~~g 765 (798)
++.|+.-+...-..|-..+.++|
T Consensus 270 kR~~V~v~~~L~~~L~~LF~~vd 292 (292)
T PF13929_consen 270 KRNNVDVTDELRSQLSELFKKVD 292 (292)
T ss_pred eecCCcCCHHHHHHHHHHHHhcC
No 482
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.06 E-value=0.035 Score=49.26 Aligned_cols=128 Identities=16% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003749 652 IMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGD 731 (798)
Q Consensus 652 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 731 (798)
++..+.+.+..+....+++.+...+...+....+.|+..|++.++.++..++++ ..+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcch
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCccccccccccchhhhhhhhhh--heeecCCCCCC
Q 003749 732 VWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSIPMLTKFYLFSFIWF--LITMNSHKNDE 798 (798)
Q Consensus 732 ~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~w~--~~~~~~~~~~~ 798 (798)
+++|..++.++.. +...+..+.+.++++.|. +..+...+.-.|. +..|..++.++
T Consensus 86 ~~~a~~Ly~~~~~---------~~~al~i~~~~~~~~~a~---e~~~~~~~~~l~~~l~~~~l~~~~~~ 142 (143)
T PF00637_consen 86 YEEAVYLYSKLGN---------HDEALEILHKLKDYEEAI---EYAKKVDDPELWEQLLKYCLDSKPFN 142 (143)
T ss_dssp HHHHHHHHHCCTT---------HTTCSSTSSSTHCSCCCT---TTGGGCSSSHHHHHHHHHHCTSTCTC
T ss_pred HHHHHHHHHHccc---------HHHHHHHHHHHccHHHHH---HHHHhcCcHHHHHHHHHHHHhcCccc
No 483
>PRK09687 putative lyase; Provisional
Probab=87.90 E-value=31 Score=34.48 Aligned_cols=263 Identities=12% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-
Q 003749 478 INLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGN- 556 (798)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~- 556 (798)
.......|.-....+.+..... ..|.......+..+...|.-+-...+...+... |...-...+.++.+.|+
T Consensus 12 ~~~~~~~~~~~~~~~~L~~~L~---d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~----d~~vR~~A~~aLg~lg~~ 84 (280)
T PRK09687 12 KEYSLYSQCKKLNDDELFRLLD---DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSK----NPIERDIGADILSQLGMA 84 (280)
T ss_pred HHHHHHHHHhhccHHHHHHHHh---CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCC----CHHHHHHHHHHHHhcCCC
Q ss_pred ---hHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003749 557 ---MDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEI 633 (798)
Q Consensus 557 ---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~ 633 (798)
.+++...+..+......+.+.....-.-++...+.......++..+...-...+..+-...+.++.+.++ .+++..
T Consensus 85 ~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~ 163 (280)
T PRK09687 85 KRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPL 163 (280)
T ss_pred ccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHH
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 003749 634 LDEMTLAGISPNEHTYTTIMHGYASLGD-TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKI 712 (798)
Q Consensus 634 ~~~m~~~~~~p~~~t~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 712 (798)
+-.+.+ .++...-...+.++.+.+. ...+...+..+.. ..+..+-...+.++.+.|+ ..|...+-+..+.+.
T Consensus 164 L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~ 236 (280)
T PRK09687 164 LINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT 236 (280)
T ss_pred HHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003749 713 PRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSK 763 (798)
Q Consensus 713 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~ 763 (798)
.....+.++...|+. +|+..+.++.+. .+|..+-...+.+|.+
T Consensus 237 -----~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 237 -----VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred -----hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
No 484
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=87.88 E-value=3.5 Score=39.15 Aligned_cols=74 Identities=18% Similarity=0.354 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCC
Q 003749 33 SFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPP 106 (798)
Q Consensus 33 ~~~~~~~p~ppp~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~ppppp 106 (798)
+......|.|.|+.+++....+|.++++...+.|.+++...+......+++++..+..+++....+..++|+.+
T Consensus 34 Pa~A~AdPaPtPt~PPtt~~aPP~p~~P~atPaP~appt~~PAdPnA~~Pp~PadPna~~pppadpnap~P~~p 107 (297)
T PF07174_consen 34 PATAQADPAPTPTAPPTTTTAPPAPPPPAATPAPTAPPTPPPADPNAPPPPPPADPNAAPPPPADPNAPPPPAP 107 (297)
T ss_pred cccccCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
No 485
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=87.84 E-value=5.9 Score=46.09 Aligned_cols=116 Identities=11% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------------------------CCCCCCCCCCCC
Q 003749 3 NILSLSAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPT-------------------------PPEPHNLHRPPK 57 (798)
Q Consensus 3 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ppp~-------------------------~~~p~~~~~~~~ 57 (798)
|..--..+|.+.-+..++.+.++.|.++-.+...+..|+..+. ..-+-+..+||.
T Consensus 1817 gtg~~G~~P~~~v~~~pP~p~s~ap~pplr~~~a~~~p~a~~rq~~vP~~~~r~~s~a~~~~~t~~~k~q~~~p~m~Ppq 1896 (1958)
T KOG0391|consen 1817 GTGPGGSAPAQVVHTQPPKPISPAPFPPLRQQQAQQQPTATTRQVQVPQIQGRAQSPAGKLTPTHLIKMQKQKPQMPPPQ 1896 (1958)
T ss_pred cCCCCCCCCccccccCCCCCCCCCCCCcccccccccCCCccccccccCcccccCcCCCCCCCHHHHHhhcCCCCCCCCCc
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 003749 58 SSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQE 118 (798)
Q Consensus 58 ~~~~~~~~p~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~ppppp~~~~~p~~~~~~ 118 (798)
+.+.+.+.-|+||.++.++..+--.++.-.........-+.+..+.+|+++|+++.+.+++
T Consensus 1897 ~~~~pqp~gpqPp~~p~p~l~~v~~~rrg~lg~~rs~gd~~se~~sqpqp~p~~~~p~pp~ 1957 (1958)
T KOG0391|consen 1897 PAAQPQPQGPQPPQQPSPQLTTVTAPRRGALGVARSTGDPTSELQSQPQPQPQAPQPAPPP 1957 (1958)
T ss_pred cCCCCCCCCCCCCCCCCCCCCccccCCCCCccceeccCCCCccccCCCCCCCCCCCCCCCC
No 486
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=87.78 E-value=0.32 Score=48.19 Aligned_cols=80 Identities=18% Similarity=0.113 Sum_probs=0.0
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++.|+|++...+.+.+...++..+|.+........ ..+..++|++.+.|...+.+..++... ....+.++.+...+.
T Consensus 89 ~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~-~~~~~sk~~~s~~f~~ks~~~~~l~~s--~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 89 STFFVGELSENIEESEDDNFSSEAGLRVDARSSSL-EDSLSSKGGLSVHFAGKSQFFAALEES--GSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccchhhccccccchhhcCcccchhhhh-ccccccccceeeccccHHHHHHHHHhh--hccccccccccCccc
Q ss_pred ccc
Q 003749 232 DGR 234 (798)
Q Consensus 232 ~~~ 234 (798)
..+
T Consensus 166 ~~~ 168 (285)
T KOG4210|consen 166 TRR 168 (285)
T ss_pred ccc
No 487
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=87.67 E-value=31 Score=40.42 Aligned_cols=152 Identities=18% Similarity=0.150 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003749 2 DNILSLSAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTH 81 (798)
Q Consensus 2 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ppp~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 81 (798)
+|+--.|+-=.|.+|.-.++.+.-.|++++=++..|.-.|..|...|..|...|..|.-.|.+|.-.|.++.-.|..|.=
T Consensus 1450 p~~s~tsp~ysptsp~ys~tsp~~sptspsysptspsysptspsysptspsysptspsysptspsysptspsysptspsy 1529 (1605)
T KOG0260|consen 1450 PGYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1529 (1605)
T ss_pred CCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcchhhhcccccc
Q 003749 82 VPSPPSHSLSAKLRLSSKLSPPPPPP---PPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGK 153 (798)
Q Consensus 82 ~p~~p~~~~~~~~~~~~~~~ppppp~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (798)
.|..|.=+|.++...+..|.=.|..| |..|.-.+..+.-++.++.-...+..++++..-++....-.+....
T Consensus 1530 sptspsysptspsysptspsysptspsysptsp~ysptspsysptspsys~~~~ysp~sp~ysptsp~ysp~sps 1604 (1605)
T KOG0260|consen 1530 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSTSPSYSPTSPSYSPTSPSYSPTSPS 1604 (1605)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCC
No 488
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.66 E-value=11 Score=30.33 Aligned_cols=88 Identities=9% Similarity=0.101 Sum_probs=0.0
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 003749 674 NEGLELDVFTYEALLKACCKSGRMQ--SALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDV 751 (798)
Q Consensus 674 ~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 751 (798)
++|..-+..-|+.--..|+...+++ +..+-++.+...++.|+..+....+.+|.|.+++..|+++|+-.+.+ .....
T Consensus 1 sH~~~Et~eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~ 79 (108)
T PF02284_consen 1 SHGSEETDEEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKK 79 (108)
T ss_dssp -TS----HHHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-T
T ss_pred CCCcccCHHHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChH
Q ss_pred HHHHHHHHHHH
Q 003749 752 HTYTSFINACS 762 (798)
Q Consensus 752 ~~~~~l~~~~~ 762 (798)
.+|.-+++-+.
T Consensus 80 ~~Y~~~lqElk 90 (108)
T PF02284_consen 80 EIYPYILQELK 90 (108)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHh
No 489
>PF15449 Retinal: Retinal protein
Probab=87.49 E-value=20 Score=41.49 Aligned_cols=156 Identities=16% Similarity=0.198 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003749 1 MDNILSLSAPHFPHTPAT-LLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSAT 79 (798)
Q Consensus 1 ~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ppp~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 79 (798)
.|+.+...++.+-.++.+ ......|+-.--+.+......|+.--..+-+|....+.++..|.....|.||-.+...+++
T Consensus 986 ~e~s~arp~~~p~s~easr~~~Ersp~~~Rk~SPtR~hwsp~~ekR~~SpPsshr~aQPS~P~v~~~PSPP~SPr~~SPP 1065 (1287)
T PF15449_consen 986 SEPSLARPPRGPHSPEASRQSQERSPPLVRKASPTRAHWSPRAEKRLPSPPSSHRPAQPSLPSVQRSPSPPLSPRVLSPP 1065 (1287)
T ss_pred cCccccCCCCCCCCCcccccccccCCcccccCCCCcCCCCCccccCCCCCCccCCCCCCCCCcCCCCCCCCCCCCCCCCC
Q ss_pred CC---CCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcchh--hhcccccce
Q 003749 80 TH---VPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEE--TEFRQEGKI 154 (798)
Q Consensus 80 ~~---~p~~p~~~~~~~~~~~~~~~ppppp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 154 (798)
.. +.||++...++++..+++.+-.++.+|.......++.-...+.++..+................ .-....+.|
T Consensus 1066 ~~kk~~SPP~q~KlpSPP~~s~p~q~~~~SpP~q~~Eas~pss~~spSPP~SPSq~~K~~rdsed~~~~saK~~~Nt~SI 1145 (1287)
T PF15449_consen 1066 TQKKLPSPPPQHKLPSPPPQSPPAQHKLSSPPAQRREASPPSSGPSPSPPVSPSQGPKEQRDSEDSQAASAKVSGNTCSI 1145 (1287)
T ss_pred ccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCccccCccccccccCCccce
Q ss_pred ee
Q 003749 155 FV 156 (798)
Q Consensus 155 ~v 156 (798)
|.
T Consensus 1146 FC 1147 (1287)
T PF15449_consen 1146 FC 1147 (1287)
T ss_pred ec
No 490
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.10 E-value=41 Score=34.99 Aligned_cols=276 Identities=13% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CcCHHHHHHHHHHH
Q 003749 406 NIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF----SPSIISYGCLINLY 481 (798)
Q Consensus 406 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~ 481 (798)
..+.+..+.|+++...+.......... +...+..+... ..++++++....++....-. ......|.......
T Consensus 3 ~~~eaaWrl~~Wd~l~~~~~~~~~~~~--~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l 78 (352)
T PF02259_consen 3 LAAEAAWRLGDWDLLEEYLSQSNEDSP--EYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSL 78 (352)
T ss_pred HHHHHHHhcCChhhHHHHHhhccCCCh--hHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHH
Q 003749 482 TKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKL--------KDWANVFAVFEDVMR--DGLKPDVVLYNNIIRAF 551 (798)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~ 551 (798)
.+...+.+..++.+........ ......++...... ..++..+.+-..+.+ ........+|..++..+
T Consensus 79 ~~lq~L~Elee~~~~~~~~~~~--~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~a 156 (352)
T PF02259_consen 79 VKLQQLVELEEIIELKSNLSQN--PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLA 156 (352)
T ss_pred HHHhHHHHHHHHHHHHHhhccc--HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Q ss_pred HcCCChHHHHHHHHHHHHCCCCC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------------------
Q 003749 552 CGMGNMDRAIHIVKEMQKERHRP---TSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPT------------------ 610 (798)
Q Consensus 552 ~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~------------------ 610 (798)
.+.|+++.|...+..+...+... .......-+..+...|+-.+|+..++...+.....+
T Consensus 157 Rk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (352)
T PF02259_consen 157 RKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLE 236 (352)
T ss_pred HHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccc
Q ss_pred ---------------HHHHHHHHHHHHhc------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-----
Q 003749 611 ---------------VHTFNALILGLVEK------RQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGK----- 664 (798)
Q Consensus 611 ---------------~~~~~~li~~~~~~------~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~----- 664 (798)
..++..+..-+... +..+++.+.|.+..+.. +-....|..+...+.+.-+.+.
T Consensus 237 ~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~k~~~~~a~~~~~~~~~~~~~~~~ 315 (352)
T PF02259_consen 237 VISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD-PSWEKAWHSWALFNDKLLESDPREKEE 315 (352)
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC-hhHHHHHHHHHHHHHHHHHhhhhcccc
Q ss_pred ------------HHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 665 ------------AFEYFTKLRNEGLELDVFTYEALLKAC 691 (798)
Q Consensus 665 ------------A~~~~~~~~~~~~~~~~~~~~~l~~~~ 691 (798)
|+.-|-+.+..|.. .++..+.+.+
T Consensus 316 ~~~~~~~~~~~~ai~~y~~al~~~~~---~~~~~~~RlL 351 (352)
T PF02259_consen 316 SSQEDRSEYLEQAIEGYLKALSLGSK---YVRQDLPRLL 351 (352)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhCCC---chHHHhhHhc
No 491
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.09 E-value=1.7 Score=26.80 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003749 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT 398 (798)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (798)
..+|..++.+|...|++++|+..|+++++.+..
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
No 492
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.05 E-value=23 Score=31.96 Aligned_cols=136 Identities=13% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003749 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD 535 (798)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (798)
.+++.-+.+.++.++...|..+++.+.+.|+ ...+..+...++-+|.......+ +...+.+..+.++--+|.+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~----~~~L~qllq~~Vi~DSk~lA~~L--Ls~~~~~~~~~Ql~lDMLk- 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQ----FSQLHQLLQYHVIPDSKPLACQL--LSLGNQYPPAYQLGLDMLK- 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----HHHHHHHHhhcccCCcHHHHHHH--HHhHccChHHHHHHHHHHH-
Q ss_pred CCCCCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003749 536 GLKPDVV-LYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSG 606 (798)
Q Consensus 536 g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 606 (798)
-.. .+..++..+...|++-+|+++.+..... +......++.+..+.++...-..+|+-..+.+
T Consensus 87 ----RL~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 87 ----RLGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ----HhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
No 493
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.02 E-value=7.9 Score=35.76 Aligned_cols=84 Identities=15% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHH
Q 003749 407 IIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC---GFSPSIISYGCLINLYTK 483 (798)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~ 483 (798)
++..+...-.-++|.+.|-.+...+.--+......|+..|. ..+.++++.++.+.++. +-..|...+..|++.|.+
T Consensus 112 llYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 112 LLYYHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HHHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q ss_pred cCCHHHHH
Q 003749 484 IGKVSKAL 491 (798)
Q Consensus 484 ~g~~~~A~ 491 (798)
.|+++.|.
T Consensus 191 ~~~~e~AY 198 (203)
T PF11207_consen 191 LKNYEQAY 198 (203)
T ss_pred hcchhhhh
No 494
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=86.81 E-value=58 Score=36.40 Aligned_cols=491 Identities=12% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 003749 282 QAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEG 361 (798)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 361 (798)
..+++.|..++.|+ |..+.++|.-..+.+.|.++++++.+. |......-|.......-..+-+....+-....
T Consensus 199 r~lv~~y~~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e----~~~llayQIAFDL~esasQefL~~v~~~l~~d 271 (929)
T KOG2062|consen 199 RLLVKTYLKLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKE----DDLLLAYQIAFDLYESASQEFLDSVLDRLPAD 271 (929)
T ss_pred HHHHHHHccCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc----chhhhHHHHHHHHhhccCHHHHHHHHHHcccc
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 003749 362 IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHM 441 (798)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 441 (798)
-.-+......+++.+.- +...+++....-+....|.......-... +.--+.-|.-+-.-+...| ..+...+..
T Consensus 272 ~~~de~p~~kii~ILSG----e~tik~~l~FL~~~N~tD~~iL~~iK~s~-r~sv~H~A~~iAN~fMh~G-TT~D~FlR~ 345 (929)
T KOG2062|consen 272 DARDEKPMEKIISILSG----EETIKLYLQFLLRHNNTDLLILEEIKESV-RNSVCHTATLIANAFMHAG-TTSDTFLRN 345 (929)
T ss_pred cccccChHHHHHHHhcC----chHHHHHHHHHHHcCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhcC-CcchHHHHh
Q ss_pred HHHHHHhc-----------------CCHHHHHHHHHHHHHC------CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003749 442 MMDGYTII-----------------GNEEKCLIVFERLKEC------GFSPSIISYGCLINLYTKIGKVSKALEVSKVMK 498 (798)
Q Consensus 442 l~~~~~~~-----------------g~~~~A~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (798)
=++.+.+. |+...|.+++.-.+-. +++ .-.....|.-+++.+|+- ..+++....
T Consensus 346 NL~WlskAtNWaKFtAtAsLGvIH~G~~~~~~~ll~pYLP~~~~~~s~y~-EGGalyAlGLIhA~hG~~--~~~yL~~~L 422 (929)
T KOG2062|consen 346 NLDWLSKATNWAKFTATASLGVIHRGHENQAMKLLAPYLPKEAGEGSGYK-EGGALYALGLIHANHGRG--ITDYLLQQL 422 (929)
T ss_pred chhHHhhcchHhhhhhhhhcceeeccccchHHHHhhhhCCccCCCCCCcc-ccchhhhhhccccCcCcc--HHHHHHHHH
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHH-HHHHHHHCCCCCCc
Q 003749 499 SSGIKHNMKTYSMLINGFLKLKD-WANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH-IVKEMQKERHRPTS 576 (798)
Q Consensus 499 ~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~~~~~~~~~~ 576 (798)
+..-.+....-..|.-++...|. -.+..+-++.....+-......-..-+.++.-.-...+|++ ++....+-.+. ..
T Consensus 423 k~~~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHe-ki 501 (929)
T KOG2062|consen 423 KTAENEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHE-KI 501 (929)
T ss_pred HhccchhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHH-HH
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003749 577 RTFMPIIHGFARAGEMKRALEIFDMMR-RSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHG 655 (798)
Q Consensus 577 ~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 655 (798)
.-=..+.-++.--|+-++|..+..+|. ..+......-..++..+|+..|+.....+++.-..... ..|..-+..+.-+
T Consensus 502 ~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~-nDDVrRaAVialG 580 (929)
T KOG2062|consen 502 IRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDV-NDDVRRAAVIALG 580 (929)
T ss_pred HHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhccccccc-chHHHHHHHHHhe
Q ss_pred HHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------
Q 003749 656 YASLGDTGKAFEYFTKLRNE-GLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWA------- 727 (798)
Q Consensus 656 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~------- 727 (798)
+.-..+.+....+.+-+.++ +.....-+-..|.-+|+-.|+ .+|..+++-|... +.|-+--..||..-.
T Consensus 581 FVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~D--~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 581 FVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTSD--PVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred eeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhcC--hHHHHHHHHHHHHHHHHHhccc
Q ss_pred -HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHcCCccccccccccch-----------hhhhhhhhh-------
Q 003749 728 -RRGDVWEAADLMQQMKQEGVQPDVHTYTSFI-NACSKAGDMQVRFSIPMLTK-----------FYLFSFIWF------- 787 (798)
Q Consensus 728 -~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~-~~~~~~g~~~~a~~~~~~~~-----------~~~~~~~w~------- 787 (798)
-.-++..-.+.|.+.+...-.....-|..++ ++....|--...+.++.... .++...+|+
T Consensus 658 ~~~pkv~~frk~l~kvI~dKhEd~~aK~GAilAqGildaGGrNvtislqs~tg~~~~~~vvGl~~Flq~WyWfPL~~flS 737 (929)
T KOG2062|consen 658 QLCPKVNGFRKQLEKVINDKHEDGMAKFGAILAQGILDAGGRNVTISLQSMTGHTKLDAVVGLVVFLQYWYWFPLIHFLS 737 (929)
T ss_pred ccCchHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhcCCceEEEEEeccCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---heeecC
Q 003749 788 ---LITMNS 793 (798)
Q Consensus 788 ---~~~~~~ 793 (798)
.++|-+
T Consensus 738 Laf~PT~vi 746 (929)
T KOG2062|consen 738 LAFTPTTVI 746 (929)
T ss_pred HhcCcceEE
No 495
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.75 E-value=11 Score=39.44 Aligned_cols=308 Identities=10% Similarity=0.015 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHH-------------HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003749 449 IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVS-------------KALEVSKVMKSSGIKHNMKTYSMLING 515 (798)
Q Consensus 449 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-------------~A~~~~~~m~~~~~~~~~~~~~~ll~~ 515 (798)
.+.++..++++..+...|.....+.+|.-...|.+.|... .+...-+.|-.....-+...+-...-.
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aVi 109 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAVI 109 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhhee
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHcCCChHHHH---HHHHHHHHCCCCCCcccHHHHHHHHHh
Q 003749 516 FLKLKDWANVFAVFEDVMRD----GLKPDVVLYNNIIRAFCGMGNMDRAI---HIVKEMQKERHRPTSRTFMPIIHGFAR 588 (798)
Q Consensus 516 ~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~li~~~~~ 588 (798)
|.....+-+|+++...+... .-..-..........+......++|+ .++.+|...+-. ....-..-.....+
T Consensus 110 ~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~-~~~gn~~~~nn~~k 188 (696)
T KOG2471|consen 110 FYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRM-KLVGNHIPANNLLK 188 (696)
T ss_pred eeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccccccchhhhcc
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003749 589 AGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEY 668 (798)
Q Consensus 589 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~ 668 (798)
.+....|..-+--.- +.......-+..|.+..++..+..-.+...... ..+....-.--..+.-.|++.+|.++
T Consensus 189 t~s~~aAe~s~~~a~-----~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a-~~s~~~l~LKsq~eY~~gn~~kA~Kl 262 (696)
T KOG2471|consen 189 TLSPSAAERSFSTAD-----LKLELQLYKVRFLLQTRNLKLAKREVKHVMNIA-QDSSMALLLKSQLEYAHGNHPKAMKL 262 (696)
T ss_pred cCCcchhcccchhhc-----cchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhc-CCCcHHHHHHHHHHHHhcchHHHHHH
Q ss_pred HHHHHHcCCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHh-------CCCCC----------CHHHHHHHH
Q 003749 669 FTKLRNEGLEL--------DVFTYEALLKACCKSGRMQSALAVTKEMSA-------QKIPR----------NTFVYNILI 723 (798)
Q Consensus 669 ~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~----------~~~~~~~l~ 723 (798)
+...--..-.- ....||.|.-...+.|.+.-+..+|.++.+ .|+.+ ...+....+
T Consensus 263 L~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG 342 (696)
T KOG2471|consen 263 LLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCG 342 (696)
T ss_pred HHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhh
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003749 724 DGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKA 764 (798)
Q Consensus 724 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~ 764 (798)
-.|...|+.-.|.+.|.+...- +.-++..|-.|..+|...
T Consensus 343 ~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 343 LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
No 496
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.65 E-value=65 Score=36.81 Aligned_cols=381 Identities=11% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003749 300 GLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (798)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (798)
.++|..+.+.|..+-|+...+.=..+ ...+..+|+++.|++...++- |..+|..|+....++
T Consensus 624 qaiIaYLqKkgypeiAL~FVkD~~tR------------F~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~q 685 (1202)
T KOG0292|consen 624 QAIIAYLQKKGYPEIALHFVKDERTR------------FELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQ 685 (1202)
T ss_pred HHHHHHHHhcCCcceeeeeecCcchh------------eeeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHh
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 003749 380 GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459 (798)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (798)
|+.+-|+-.|++... |..|--.|.-.|+.++-.++.+....++- ...........|+.++-.+++
T Consensus 686 gn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~D------~~~~~qnalYl~dv~ervkIl 750 (1202)
T KOG0292|consen 686 GNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRND------ATGQFQNALYLGDVKERVKIL 750 (1202)
T ss_pred cchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhhh------hHHHHHHHHHhccHHHHHHHH
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------------------------HHHHHHHHHH
Q 003749 460 ERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN------------------------MKTYSMLING 515 (798)
Q Consensus 460 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------------------------~~~~~~ll~~ 515 (798)
. +...+...-.....+|.-++|.++.++........- ...-..+=.+
T Consensus 751 ~---------n~g~~~laylta~~~G~~~~ae~l~ee~~~~~~~lP~~~~~a~ll~pP~p~~~l~nwPLl~~s~~~fe~~ 821 (1202)
T KOG0292|consen 751 E---------NGGQLPLAYLTAAAHGLEDQAEKLGEELEKQVPSLPEVDPNASLLQPPVPIMPLENWPLLSVSKGTFEGA 821 (1202)
T ss_pred H---------hcCcccHHHHHHhhcCcHHHHHHHHHhhccccCCCCCCCCcccccCCCCccccccCCchhhhhhhhhhHh
Q ss_pred HHhcCCHHHHH----------------------HHHHHHHHcCCCCCHHHHHH---------------------------
Q 003749 516 FLKLKDWANVF----------------------AVFEDVMRDGLKPDVVLYNN--------------------------- 546 (798)
Q Consensus 516 ~~~~~~~~~a~----------------------~~~~~~~~~g~~~~~~~~~~--------------------------- 546 (798)
....+.-.... ..+.+....-..-...-|..
T Consensus 822 ~~~~~~~~av~~~~e~~~g~e~~~~e~~l~ed~~~~~d~~g~~~~dE~~gWdv~d~~l~pe~~~~~~~~~~~~~~p~~~~ 901 (1202)
T KOG0292|consen 822 LLSRSSSLAVDRDDEGDWGEEGWDVELMLGEDGILFNDGAGEVGEDEGGGWDVGDLDLPPEEDTPKGADDGEFVVPAQGM 901 (1202)
T ss_pred hhhhcccCcccccccccccccchhhhhccccccccccccccccCcccccCcCcccccCCccccccccccccceecCCCCC
Q ss_pred ----------HHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh---------------cCCHHHH------
Q 003749 547 ----------IIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFAR---------------AGEMKRA------ 595 (798)
Q Consensus 547 ----------li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---------------~~~~~~a------ 595 (798)
|..-....|.++.|.+++.+-...-..-...++-.-+...++ ...+.+.
T Consensus 902 ~~~~W~~nS~L~adhvaAGsf~tA~~lL~dqvgvv~f~p~Kt~fl~iy~~sR~~l~~~~~~~~~~~~~R~~se~~~~~~~ 981 (1202)
T KOG0292|consen 902 SVSIWSNNSPLAADHVAAGSFETAMRLLHDQVGVVNFGPLKTHFLKIYAGSRTYLRATPCLPVSLYPVRNWSETSSKQGL 981 (1202)
T ss_pred cchhccccCcchhhhhhcCchHHHHHHHHhhhcceecccHHhhhhhhccccceeccCCCCcccccccccccccchhhccC
Q ss_pred ------HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHH------
Q 003749 596 ------LEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLA------GISPNEHTYTTIMHGYA------ 657 (798)
Q Consensus 596 ------~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------~~~p~~~t~~~li~~~~------ 657 (798)
+..+.+-.+.|.. +...|++.+|++.|+..+-. +-.-+..-...++..|.
T Consensus 982 P~v~~~l~~l~~kl~~gy~------------ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL 1049 (1202)
T KOG0292|consen 982 PAVGFKLSQLNKKLQKGYK------------LTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGL 1049 (1202)
T ss_pred CcccccHHHHHHHHHHHHh------------hhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhh
Q ss_pred ---------hcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003749 658 ---------SLGDTGKAFEYFTKLRNEGLELD--VFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (798)
Q Consensus 658 ---------~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (798)
..+..+++.++-.......+.|- ..+....+..+.|.+++..|-.+..++++.+-.+....-...+...
T Consensus 1050 ~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a 1129 (1202)
T KOG0292|consen 1050 SVELERRKLKKPNLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQA 1129 (1202)
T ss_pred eeeeeecccCCchHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q ss_pred HHcCCHHH
Q 003749 727 ARRGDVWE 734 (798)
Q Consensus 727 ~~~g~~~~ 734 (798)
+...-.++
T Consensus 1130 ~eknp~Da 1137 (1202)
T KOG0292|consen 1130 AEKNPTDA 1137 (1202)
T ss_pred hhcCcccc
No 497
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=86.57 E-value=4.6 Score=38.41 Aligned_cols=101 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcchhhhcccccceeecCCCccCchHHHHHHh
Q 003749 93 KLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFF 172 (798)
Q Consensus 93 ~~~~~~~~~ppppp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f 172 (798)
+.+.+....|.|--..+.+-....-++-..+.-...........++.......+ ||++||+.++.-.||+..+
T Consensus 279 ~l~gp~~~lpqp~~eq~~~~t~~rR~p~~~g~~~n~~~~s~g~~~g~~a~~~~d-------i~~~nl~rd~rv~dlk~~l 351 (396)
T KOG4410|consen 279 SLGGPGRTLPQPDNEQPQGETAQRRTPRRKGRFVNRTTKSEGDQSGVEAGAKTD-------IKLTNLSRDIRVKDLKSEL 351 (396)
T ss_pred ccCCCCccCCCCCcccccccccccCCCCCCCCcccccccCCCCCCcccCccccc-------eeeccCccccchHHHHHHH
Q ss_pred cccCcc-eEEEEecCCCCCCCCcceEEEEeCChhHH
Q 003749 173 RQFGPI-KNVILIKGYNNFEKNVGFGFVIYDGPAAE 207 (798)
Q Consensus 173 ~~~g~v-~~~~~~~~~~~~~~~~g~~fv~f~~~~~a 207 (798)
.+-|-+ .++...-. +|-||..|.+...+
T Consensus 352 r~~~~~pm~iswkg~-------~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 352 RKRECTPMSISWKGH-------FGKCFLHFGNRKGV 380 (396)
T ss_pred HhcCCCceeEeeecC-------CcceeEecCCccCC
No 498
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.45 E-value=34 Score=33.39 Aligned_cols=193 Identities=12% Similarity=0.097 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCC
Q 003749 24 PHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPP 103 (798)
Q Consensus 24 ~~~~~~~~~~~~~~~~p~ppp~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~pp 103 (798)
+....+......|...|++|...----..+.++.--+.++..|...-.....++..+..-.....+.-.....++...-.
T Consensus 42 ~~~~lp~~nt~sp~~spsgps~~~~~rsaps~~~g~adqpgsp~ah~akS~~~~~~qS~~~~q~tPg~~~~~gs~sfssl 121 (350)
T KOG4285|consen 42 RKATLPSSNTASPLNSPSGPSSDIFARSAPSVPQGLADQPGSPSAHWAKSLVQSGEQSAAQTQNTPGNLSFGGSSSFSSL 121 (350)
T ss_pred cccccccccCCCCCCCCCCCCcchhhcccccccccCCCCCCCcccccCcccCCCccccccccccCCCcccccCCCCcccc
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccC---------------cchhhhcccccceeecCCCc-------
Q 003749 104 PPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLAT---------------SQEETEFRQEGKIFVGNLPN------- 161 (798)
Q Consensus 104 ppp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~v~nl~~------- 161 (798)
-.|.+.+....+--..+...+-..-+....+....... .+......++..+=-|+...
T Consensus 122 r~p~~q~~q~s~~g~~q~~ap~~s~Qd~~~pas~igqpn~~~ar~ttLspP~~a~v~p~~~qg~s~pte~~~d~~D~WVT 201 (350)
T KOG4285|consen 122 RKPAPQSIQTSSFGGQQMHAPLRSLQDKVEPASKIGQPNTFTARSTTLSPPITARVTPRLAQGESQPTEEEADAADTWVT 201 (350)
T ss_pred ccCCccccccCcchhhhhcCcccccccccCCCCCCCCCCcccccccccCCccccccccccccccccccccccccccceEE
Q ss_pred -----cCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 162 -----WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 162 -----~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
--.-..|-++|++||.|.+...... ..+-+|-|.+..+|++||.. ||+.|+|..+
T Consensus 202 VfGFppg~~s~vL~~F~~cG~Vvkhv~~~n-------gNwMhirYssr~~A~KALsk---ng~ii~g~vm 261 (350)
T KOG4285|consen 202 VFGFPPGQVSIVLNLFSRCGEVVKHVTPSN-------GNWMHIRYSSRTHAQKALSK---NGTIIDGDVM 261 (350)
T ss_pred EeccCccchhHHHHHHHhhCeeeeeecCCC-------CceEEEEecchhHHHHhhhh---cCeeeccceE
No 499
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.28 E-value=5.1 Score=36.98 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=0.0
Q ss_pred cccchhh-hhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCC
Q 003749 255 FRSTWHK-EREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRAR---GIEPT 330 (798)
Q Consensus 255 ~~~~~~~-~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~ 330 (798)
.++.|-+ +.+.|++.|..+-..... +.......+..|....|.++++.++-+..+. +-.+|
T Consensus 113 lYy~Wsr~~d~~A~~~fL~~E~~~~l---------------~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n 177 (203)
T PF11207_consen 113 LYYHWSRFGDQEALRRFLQLEGTPEL---------------ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFN 177 (203)
T ss_pred HHHHhhccCcHHHHHHHHHHcCCCCC---------------CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCC
Q ss_pred HHHHHHHHHHHHccCChHHHH
Q 003749 331 LHVYTNLIHAYAVGRDMEEAL 351 (798)
Q Consensus 331 ~~~~~~ll~~~~~~g~~~~A~ 351 (798)
..++.+|+..|.+.|+++.|.
T Consensus 178 ~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 178 PEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHHHHhcchhhhh
No 500
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=85.99 E-value=36 Score=33.23 Aligned_cols=226 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHCC--------CCCCHHHHHHHH-HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003749 318 TFENMRARG--------IEPTLHVYTNLI-HAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHW 388 (798)
Q Consensus 318 ~~~~~~~~~--------~~~~~~~~~~ll-~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 388 (798)
+|..+.+.| ++-|...+|+|+ +-=.+...++++++-.++.- |-.--...|..+...|++.++.+.+.++
T Consensus 60 lYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~ 137 (412)
T COG5187 60 LYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEW 137 (412)
T ss_pred HHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred HHHHHhc----CCCCChhhHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH--HhcCCHHHHHHHHHH
Q 003749 389 FEEAKER----HATLNAIIYGN-IIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGY--TIIGNEEKCLIVFER 461 (798)
Q Consensus 389 ~~~~~~~----~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~ 461 (798)
.++..+. |.+.|+..... |...|....-+++-++..+.|+++|...+..--.-.-.+- ....++.+|-.+|.+
T Consensus 138 ~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d 217 (412)
T COG5187 138 MRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSD 217 (412)
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred HHHCCCCcCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003749 462 LKECGFSPSIISYGCLINLYTKIGKVS--------------KALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFA 527 (798)
Q Consensus 462 ~~~~~~~~~~~~~~~li~~~~~~g~~~--------------~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 527 (798)
....--.....+|........-.|-+. +.+.++..-.+.+ +.....+-+..|--.|++.....
T Consensus 218 ~l~tF~S~El~sY~~~vrYa~~~Gl~~leR~diktki~dspevl~vi~~~e~l~---sl~~l~~SLy~cdY~~~F~~ll~ 294 (412)
T COG5187 218 ILPTFESSELISYSRAVRYAIFCGLLRLERRDIKTKILDSPEVLDVIGSSEKLG---SLVQLATSLYECDYGGDFMNLLY 294 (412)
T ss_pred HhccccccccccHHHHHHHHHHhhhheeehhhhhhhhcCCHHHHHhccchhhhh---hHHHHHHHHHHhccchhhHHHHH
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003749 528 VFEDVMRDGLKPDVVLYNNIIRAFCG 553 (798)
Q Consensus 528 ~~~~~~~~g~~~~~~~~~~li~~~~~ 553 (798)
+|...++ +....+.-.+.|++
T Consensus 295 ~~~n~L~-----~d~fl~rh~d~fvR 315 (412)
T COG5187 295 LFCNSLQ-----DDVFLGRHVDLFVR 315 (412)
T ss_pred HHHhhcc-----chHHHHHHHHHHHH
Done!