Query 003749
Match_columns 798
No_of_seqs 742 out of 5368
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 02:50:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3E-39 1E-43 366.7 45.4 438 294-744 82-578 (597)
2 2xpi_A Anaphase-promoting comp 100.0 7.6E-38 2.6E-42 355.1 41.5 454 306-776 63-575 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 8.7E-28 3E-32 256.4 49.7 380 303-728 6-385 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.2E-27 4E-32 255.3 50.1 371 280-695 14-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.5E-28 5E-33 266.1 24.2 216 560-775 9-234 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.9E-27 6.5E-32 257.4 25.7 205 314-518 8-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 2.4E-24 8.1E-29 239.2 40.8 440 296-745 6-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 2.8E-23 9.6E-28 230.5 38.9 443 245-721 13-488 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 9.4E-23 3.2E-27 222.1 42.2 392 347-773 8-447 (450)
10 3fp2_A TPR repeat-containing p 99.9 5.6E-23 1.9E-27 229.5 38.8 434 296-745 25-491 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 1.7E-22 5.9E-27 220.0 41.5 303 295-605 25-358 (450)
12 3fp2_A TPR repeat-containing p 99.9 4.3E-22 1.5E-26 222.3 39.2 430 243-711 30-492 (537)
13 2xm6_A Protein corresponding t 99.9 4.6E-18 1.6E-22 186.7 51.5 364 315-711 26-433 (490)
14 2xm6_A Protein corresponding t 99.9 6.6E-18 2.2E-22 185.5 51.2 353 295-677 38-434 (490)
15 3ieg_A DNAJ homolog subfamily 99.9 5.2E-19 1.8E-23 185.8 40.5 332 296-658 3-352 (359)
16 3ieg_A DNAJ homolog subfamily 99.9 8E-19 2.7E-23 184.4 41.7 343 365-762 2-351 (359)
17 2ooe_A Cleavage stimulation fa 99.9 2.3E-17 7.9E-22 183.0 47.3 421 295-745 12-492 (530)
18 2ooe_A Cleavage stimulation fa 99.8 3E-17 1E-21 182.1 44.5 402 280-710 27-492 (530)
19 3hym_B Cell division cycle pro 99.8 2.4E-18 8.2E-23 178.5 33.0 283 437-726 23-314 (330)
20 1xi4_A Clathrin heavy chain; a 99.8 1E-16 3.6E-21 182.6 48.4 410 294-765 983-1415(1630)
21 3hym_B Cell division cycle pro 99.8 4.3E-18 1.5E-22 176.5 34.0 282 368-656 24-314 (330)
22 4fxv_A ELAV-like protein 1; RN 99.8 7.6E-21 2.6E-25 155.3 9.3 86 145-233 13-98 (99)
23 1fch_A Peroxisomal targeting s 99.8 8.1E-19 2.8E-23 185.2 25.2 331 274-636 10-355 (368)
24 1fch_A Peroxisomal targeting s 99.8 2.6E-18 8.9E-23 181.3 27.7 292 258-565 36-354 (368)
25 1xi4_A Clathrin heavy chain; a 99.8 1.4E-15 4.8E-20 173.5 47.1 380 333-772 987-1376(1630)
26 4eqf_A PEX5-related protein; a 99.8 2.9E-18 9.8E-23 180.8 22.6 236 331-570 65-310 (365)
27 3s8s_A Histone-lysine N-methyl 99.8 1.7E-19 5.9E-24 150.2 9.8 82 151-235 6-87 (110)
28 4g1t_A Interferon-induced prot 99.8 2.2E-16 7.5E-21 172.8 36.3 142 592-746 316-460 (472)
29 2lkz_A RNA-binding protein 5; 99.8 1.3E-19 4.4E-24 145.7 7.7 78 153-233 11-94 (95)
30 4eqf_A PEX5-related protein; a 99.8 7.5E-18 2.6E-22 177.6 23.6 267 471-741 65-352 (365)
31 4g1t_A Interferon-induced prot 99.8 9.9E-17 3.4E-21 175.6 33.2 364 330-710 50-459 (472)
32 2lxi_A RNA-binding protein 10; 99.8 7.5E-20 2.6E-24 147.1 5.3 83 152-236 2-85 (91)
33 1b89_A Protein (clathrin heavy 99.8 9.8E-18 3.4E-22 172.1 21.7 376 308-740 15-412 (449)
34 1b89_A Protein (clathrin heavy 99.8 2.7E-17 9.3E-22 168.8 24.5 373 264-704 20-411 (449)
35 3cv0_A Peroxisome targeting si 99.8 7.7E-17 2.6E-21 166.8 27.4 264 296-565 21-310 (327)
36 3n9u_C Cleavage and polyadenyl 99.8 5.7E-19 1.9E-23 157.3 9.3 84 150-236 54-139 (156)
37 2khc_A Testis-specific RNP-typ 99.8 3E-18 1E-22 146.5 12.9 80 150-232 39-118 (118)
38 3cv0_A Peroxisome targeting si 99.8 1.4E-16 4.9E-21 164.7 27.3 259 477-742 27-312 (327)
39 3p5t_L Cleavage and polyadenyl 99.8 4.1E-19 1.4E-23 143.1 6.1 81 152-235 2-84 (90)
40 1sjq_A Polypyrimidine tract-bi 99.8 1.2E-18 4.1E-23 140.7 8.3 81 150-237 15-95 (105)
41 3ns6_A Eukaryotic translation 99.8 5.9E-19 2E-23 145.0 5.8 83 151-236 6-95 (100)
42 3md1_A Nuclear and cytoplasmic 99.7 2.6E-18 8.9E-23 136.5 9.1 80 152-234 2-81 (83)
43 2x1f_A MRNA 3'-END-processing 99.7 4.3E-18 1.5E-22 139.2 10.5 84 151-237 2-85 (96)
44 2wbr_A GW182, gawky, LD47780P; 99.7 2.5E-18 8.4E-23 131.0 8.2 75 151-234 7-81 (89)
45 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.7E-18 9.3E-23 137.8 8.9 82 150-234 5-86 (87)
46 2e5h_A Zinc finger CCHC-type a 99.7 6.8E-18 2.3E-22 137.7 10.9 80 150-232 15-94 (94)
47 3r27_A HnRNP L, heterogeneous 99.7 3E-18 1E-22 136.7 8.2 79 149-236 19-99 (100)
48 2cqc_A Arginine/serine-rich sp 99.7 6.3E-18 2.2E-22 138.3 10.3 81 150-233 14-94 (95)
49 3mdf_A Peptidyl-prolyl CIS-tra 99.7 4E-18 1.4E-22 136.2 8.4 80 150-232 6-85 (85)
50 2do4_A Squamous cell carcinoma 99.7 8.1E-18 2.8E-22 138.9 10.4 82 150-235 16-97 (100)
51 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.2E-18 7.6E-23 141.8 6.9 79 152-234 20-98 (100)
52 3mkr_A Coatomer subunit epsilo 99.7 8.4E-16 2.9E-20 155.1 27.3 253 303-571 6-265 (291)
53 1u6f_A Tcubp1, RNA-binding pro 99.7 1.9E-17 6.6E-22 146.1 13.4 82 151-235 42-123 (139)
54 2m2b_A RNA-binding protein 10; 99.7 3.5E-18 1.2E-22 148.5 8.1 82 150-235 22-109 (131)
55 2cq0_A Eukaryotic translation 99.7 5.6E-18 1.9E-22 140.8 8.7 84 149-235 13-96 (103)
56 2cqb_A Peptidyl-prolyl CIS-tra 99.7 6.8E-18 2.3E-22 140.1 9.2 85 150-237 11-95 (102)
57 2cpz_A CUG triplet repeat RNA- 99.7 1.4E-17 4.8E-22 141.4 11.3 84 150-236 24-107 (115)
58 2rs2_A Musashi-1, RNA-binding 99.7 7.2E-18 2.5E-22 140.9 9.2 83 149-235 23-105 (109)
59 4f25_A Polyadenylate-binding p 99.7 5.4E-18 1.9E-22 143.4 8.5 79 152-235 6-84 (115)
60 2dnz_A Probable RNA-binding pr 99.7 8.2E-18 2.8E-22 137.5 9.3 84 150-236 4-87 (95)
61 2cq1_A PTB-like protein L; RRM 99.7 7.8E-18 2.7E-22 136.9 8.9 82 149-237 13-94 (101)
62 2dnm_A SRP46 splicing factor; 99.7 7.1E-18 2.4E-22 140.1 8.9 83 150-235 12-94 (103)
63 1whw_A Hypothetical protein ri 99.7 8.2E-18 2.8E-22 138.7 9.2 84 150-236 7-90 (99)
64 2cq4_A RNA binding motif prote 99.7 1.1E-17 3.8E-22 141.8 10.2 82 150-235 24-105 (114)
65 1x5u_A Splicing factor 3B subu 99.7 8.4E-18 2.9E-22 140.3 9.2 83 150-235 14-96 (105)
66 2la6_A RNA-binding protein FUS 99.7 7.1E-18 2.4E-22 138.8 8.5 78 152-232 14-99 (99)
67 2dgo_A Cytotoxic granule-assoc 99.7 1.1E-17 3.7E-22 142.3 9.8 85 149-236 13-97 (115)
68 3mkr_A Coatomer subunit epsilo 99.7 1.2E-15 4.1E-20 154.0 26.4 253 338-606 6-265 (291)
69 2dgs_A DAZ-associated protein 99.7 1.1E-17 3.7E-22 137.8 9.3 83 150-236 9-91 (99)
70 2kxn_B Transformer-2 protein h 99.7 1E-17 3.4E-22 144.3 9.3 83 150-235 45-127 (129)
71 1x4h_A RNA-binding protein 28; 99.7 1.2E-17 4E-22 141.2 9.6 84 150-236 14-103 (111)
72 2jrs_A RNA-binding protein 39; 99.7 6.5E-18 2.2E-22 140.7 7.8 82 151-235 26-107 (108)
73 3ucg_A Polyadenylate-binding p 99.7 1.2E-17 4E-22 134.8 9.1 82 150-235 5-86 (89)
74 1s79_A Lupus LA protein; RRM, 99.7 6.1E-18 2.1E-22 138.8 7.4 80 150-234 10-89 (103)
75 1x5t_A Splicing factor 3B subu 99.7 9.4E-18 3.2E-22 137.5 8.4 83 150-235 4-87 (96)
76 1p27_B RNA-binding protein 8A; 99.7 9.1E-18 3.1E-22 140.4 8.4 82 150-234 22-103 (106)
77 1oo0_B CG8781-PA, drosophila Y 99.7 1.3E-17 4.6E-22 140.4 9.0 83 150-235 25-107 (110)
78 2mss_A Protein (musashi1); RNA 99.7 8.6E-18 2.9E-22 130.3 7.0 75 153-231 1-75 (75)
79 2ywk_A Putative RNA-binding pr 99.7 1.8E-17 6.2E-22 135.5 9.3 80 150-233 15-94 (95)
80 1x4d_A Matrin 3; structural ge 99.7 7E-18 2.4E-22 136.7 6.6 77 150-235 14-93 (102)
81 2fy1_A RNA-binding motif prote 99.7 1.7E-17 5.7E-22 140.3 9.1 83 149-235 5-87 (116)
82 1x4e_A RNA binding motif, sing 99.7 5.8E-18 2E-22 135.0 5.9 81 150-233 4-84 (85)
83 1x5s_A Cold-inducible RNA-bind 99.7 1.1E-17 3.9E-22 138.7 7.9 83 150-235 11-93 (102)
84 2err_A Ataxin-2-binding protei 99.7 1.5E-17 5.3E-22 139.0 8.7 80 151-235 29-108 (109)
85 2cpf_A RNA binding motif prote 99.7 1.3E-17 4.3E-22 137.2 8.1 83 150-235 4-89 (98)
86 3s7r_A Heterogeneous nuclear r 99.7 2.6E-17 8.9E-22 131.9 9.4 79 149-231 9-87 (87)
87 2ad9_A Polypyrimidine tract-bi 99.7 1.3E-17 4.5E-22 138.6 7.8 80 149-237 29-110 (119)
88 1wi8_A EIF-4B, eukaryotic tran 99.7 1.8E-17 6.3E-22 137.8 8.8 81 151-236 15-96 (104)
89 2div_A TRNA selenocysteine ass 99.7 1.5E-17 5.3E-22 137.0 8.2 83 150-235 8-95 (99)
90 2dgp_A Bruno-like 4, RNA bindi 99.7 1.5E-17 5.1E-22 139.1 8.1 84 150-236 12-98 (106)
91 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.4E-17 4.9E-22 130.0 7.4 76 152-231 1-76 (77)
92 2dng_A Eukaryotic translation 99.7 2.3E-17 8E-22 136.9 9.1 82 150-236 14-95 (103)
93 2j8a_A Histone-lysine N-methyl 99.7 1.9E-17 6.4E-22 134.9 8.1 82 152-236 3-98 (136)
94 2cpe_A RNA-binding protein EWS 99.7 2.5E-17 8.6E-22 139.4 9.2 85 149-236 13-105 (113)
95 2dnh_A Bruno-like 5, RNA bindi 99.7 2.3E-17 8E-22 137.6 8.8 83 150-236 14-99 (105)
96 1p1t_A Cleavage stimulation fa 99.7 2E-17 6.8E-22 137.9 8.1 85 150-237 7-91 (104)
97 2dgx_A KIAA0430 protein; RRM d 99.7 3E-17 1E-21 133.8 9.0 80 150-235 8-91 (96)
98 3e4b_A ALGK; tetratricopeptide 99.7 1.3E-15 4.5E-20 164.3 24.6 345 302-711 9-388 (452)
99 2cqd_A RNA-binding region cont 99.7 4.1E-17 1.4E-21 138.8 10.0 82 149-234 15-96 (116)
100 2jwn_A Embryonic polyadenylate 99.7 5.9E-17 2E-21 139.8 11.1 84 148-235 33-116 (124)
101 2d9p_A Polyadenylate-binding p 99.7 2.9E-17 1E-21 136.4 8.7 83 149-236 13-95 (103)
102 2cqp_A RNA-binding protein 12; 99.7 1.6E-17 5.4E-22 136.7 6.9 81 151-234 15-95 (98)
103 1wex_A Hypothetical protein (r 99.7 3.4E-17 1.2E-21 134.1 8.8 80 150-236 14-93 (104)
104 4a8x_A RNA-binding protein wit 99.7 2E-17 6.9E-22 133.1 7.4 82 151-235 4-86 (88)
105 2cpi_A CCR4-NOT transcription 99.7 3.3E-17 1.1E-21 137.7 8.9 84 149-235 13-102 (111)
106 2ki2_A SS-DNA binding protein 99.7 8.2E-18 2.8E-22 135.9 4.9 80 152-235 2-81 (90)
107 3spa_A Mtrpol, DNA-directed RN 99.7 4.1E-17 1.4E-21 180.4 11.8 151 610-765 126-286 (1134)
108 1x4b_A Heterogeneous nuclear r 99.7 7.4E-17 2.5E-21 137.2 10.8 84 149-236 25-108 (116)
109 2ek1_A RNA-binding protein 12; 99.7 1.8E-17 6.2E-22 135.5 6.4 80 151-233 15-94 (95)
110 2kt5_A RNA and export factor-b 99.7 1.8E-16 6E-21 136.6 12.9 83 149-235 33-115 (124)
111 2dhg_A TRNA selenocysteine ass 99.7 2.5E-17 8.6E-22 137.2 7.2 82 150-235 8-91 (104)
112 3e4b_A ALGK; tetratricopeptide 99.7 2.3E-15 8E-20 162.4 24.4 270 280-568 18-314 (452)
113 1x4a_A Splicing factor, argini 99.7 1E-16 3.4E-21 134.6 10.7 81 150-236 21-101 (109)
114 1x4f_A Matrin 3; structural ge 99.7 4.7E-17 1.6E-21 133.6 8.4 80 149-235 23-103 (112)
115 3ulh_A THO complex subunit 4; 99.7 5.2E-17 1.8E-21 136.0 8.8 80 149-232 27-106 (107)
116 2dh8_A DAZ-associated protein 99.7 7.8E-17 2.7E-21 134.3 9.8 84 149-236 14-97 (105)
117 2cqg_A TDP-43, TAR DNA-binding 99.7 1.1E-16 3.8E-21 132.9 10.5 81 150-235 14-94 (103)
118 2dgv_A HnRNP M, heterogeneous 99.7 5.1E-17 1.8E-21 131.8 8.2 81 150-235 7-87 (92)
119 2cqi_A Nucleolysin TIAR; RNA r 99.7 1E-16 3.5E-21 133.0 10.1 81 150-235 14-94 (103)
120 2cq3_A RNA-binding protein 9; 99.7 1.3E-16 4.5E-21 132.4 10.4 82 150-236 14-95 (103)
121 2do0_A HnRNP M, heterogeneous 99.7 9.8E-17 3.3E-21 136.1 9.8 82 149-234 13-94 (114)
122 2nlw_A Eukaryotic translation 99.7 6.3E-17 2.2E-21 134.4 8.4 80 151-235 15-101 (105)
123 2a3j_A U1 small nuclear ribonu 99.7 5.4E-17 1.8E-21 138.1 8.1 79 151-235 29-111 (127)
124 2lea_A Serine/arginine-rich sp 99.7 5.4E-17 1.8E-21 141.1 8.0 84 149-235 45-128 (135)
125 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.4E-16 8.1E-21 139.7 12.3 79 150-231 62-140 (140)
126 2la4_A Nuclear and cytoplasmic 99.7 6.2E-17 2.1E-21 133.8 7.8 75 151-234 27-101 (101)
127 3ex7_B RNA-binding protein 8A; 99.7 6.3E-17 2.2E-21 140.1 8.0 83 150-235 21-103 (126)
128 3uq3_A Heat shock protein STI1 99.7 1.2E-14 3.9E-19 144.5 25.7 226 296-535 5-236 (258)
129 3spa_A Mtrpol, DNA-directed RN 99.7 6.2E-17 2.1E-21 179.0 9.8 119 576-694 127-249 (1134)
130 2dis_A Unnamed protein product 99.7 6.3E-17 2.1E-21 136.1 7.7 83 150-235 7-93 (109)
131 2dnn_A RNA-binding protein 12; 99.7 1E-16 3.5E-21 132.3 8.8 78 151-234 16-93 (109)
132 2cph_A RNA binding motif prote 99.7 1.1E-16 3.6E-21 134.2 9.0 85 150-235 14-98 (107)
133 2krb_A Eukaryotic translation 99.7 4.8E-17 1.7E-21 128.0 6.4 73 152-229 2-81 (81)
134 2cpj_A Non-POU domain-containi 99.7 1.1E-16 3.7E-21 131.7 8.6 80 147-235 11-90 (99)
135 1iqt_A AUF1, heterogeneous nuc 99.7 5.3E-17 1.8E-21 125.9 6.3 75 153-231 1-75 (75)
136 2db1_A Heterogeneous nuclear r 99.7 9.6E-17 3.3E-21 136.1 8.4 81 150-235 16-99 (118)
137 2jvr_A Nucleolar protein 3; RN 99.7 1E-16 3.4E-21 132.6 8.2 79 150-235 27-106 (111)
138 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.1E-16 3.9E-21 144.1 9.2 85 149-236 37-121 (156)
139 2hgl_A HNRPF protein, heteroge 99.7 6E-17 2E-21 139.5 6.7 81 150-235 43-126 (136)
140 1wel_A RNA-binding protein 12; 99.7 6.1E-17 2.1E-21 139.2 6.3 82 150-235 24-105 (124)
141 1wez_A HnRNP H', FTP-3, hetero 99.7 1.2E-16 4E-21 131.3 7.5 80 150-235 14-93 (102)
142 2cpy_A RNA-binding protein 12; 99.7 1.3E-16 4.5E-21 134.7 8.1 81 150-235 14-95 (114)
143 1fj7_A Nucleolin RBD1, protein 99.7 3.1E-17 1.1E-21 135.6 3.9 80 151-235 17-96 (101)
144 3uq3_A Heat shock protein STI1 99.7 2.9E-14 9.8E-19 141.6 26.3 223 509-745 8-236 (258)
145 2dgw_A Probable RNA-binding pr 99.7 2.4E-16 8.1E-21 127.4 9.0 79 150-234 9-87 (91)
146 1x5o_A RNA binding motif, sing 99.7 3.3E-16 1.1E-20 132.8 10.0 81 150-234 24-112 (114)
147 2kn4_A Immunoglobulin G-bindin 99.7 1.6E-16 5.6E-21 143.8 8.6 83 150-235 69-151 (158)
148 3q2s_C Cleavage and polyadenyl 99.7 1.2E-16 4.1E-21 152.7 8.0 84 150-236 67-152 (229)
149 2lmi_A GRSF-1, G-rich sequence 99.7 7.5E-17 2.6E-21 134.4 5.7 82 149-235 9-93 (107)
150 2h6f_A Protein farnesyltransfe 99.7 2.9E-14 1E-18 148.7 26.7 248 296-551 97-363 (382)
151 1why_A Hypothetical protein ri 99.6 3.6E-16 1.2E-20 128.0 9.2 77 150-235 16-94 (97)
152 2fc9_A NCL protein; structure 99.6 2.8E-16 9.7E-21 129.8 8.6 81 149-236 13-93 (101)
153 1rk8_A CG8781-PA, CG8781-PA pr 99.6 2.4E-16 8.3E-21 143.1 8.9 85 150-237 71-155 (165)
154 2pl2_A Hypothetical conserved 99.6 1.8E-14 6.1E-19 138.7 22.3 197 295-497 4-211 (217)
155 2jvo_A Nucleolar protein 3; nu 99.6 4E-16 1.4E-20 129.7 9.1 74 151-235 31-104 (108)
156 1whx_A Hypothetical protein ri 99.6 2.4E-16 8.2E-21 132.0 7.7 79 149-236 8-86 (111)
157 2pl2_A Hypothetical conserved 99.6 2.8E-14 9.5E-19 137.4 22.9 208 330-567 4-211 (217)
158 2e5j_A Methenyltetrahydrofolat 99.6 3.1E-16 1.1E-20 128.3 7.7 78 150-235 18-95 (97)
159 1nu4_A U1A RNA binding domain; 99.6 2.2E-16 7.5E-21 129.6 6.8 80 150-235 7-90 (97)
160 2lcw_A RNA-binding protein FUS 99.4 1.6E-17 5.6E-22 141.1 0.0 85 149-236 5-97 (116)
161 2fc8_A NCL protein; structure 99.6 4.3E-16 1.5E-20 129.1 8.6 81 150-236 14-94 (102)
162 2xnq_A Nuclear polyadenylated 99.6 5.8E-16 2E-20 126.1 9.2 74 151-235 22-96 (97)
163 1ouv_A Conserved hypothetical 99.6 4.8E-13 1.6E-17 134.2 32.7 224 295-536 5-252 (273)
164 3lqv_A PRE-mRNA branch site pr 99.6 4.2E-16 1.4E-20 132.3 8.2 79 151-235 8-86 (115)
165 1wg5_A Heterogeneous nuclear r 99.6 4.3E-16 1.5E-20 129.0 8.0 81 150-235 14-95 (104)
166 1x4g_A Nucleolysin TIAR; struc 99.6 7.4E-16 2.5E-20 129.2 9.4 79 148-235 22-100 (109)
167 1ouv_A Conserved hypothetical 99.6 7.7E-13 2.6E-17 132.7 33.1 224 330-571 5-252 (273)
168 2cpx_A Hypothetical protein FL 99.6 2E-16 7E-21 134.4 5.5 83 150-235 24-106 (115)
169 2cq2_A Hypothetical protein LO 99.6 4.6E-16 1.6E-20 127.5 7.3 76 150-234 24-106 (114)
170 1fjc_A Nucleolin RBD2, protein 99.6 4.4E-16 1.5E-20 127.4 7.1 79 149-235 14-92 (96)
171 3u4t_A TPR repeat-containing p 99.6 7.7E-14 2.6E-18 139.9 25.2 246 297-547 4-261 (272)
172 1x4c_A Splicing factor, argini 99.6 1.4E-15 4.9E-20 127.0 10.3 76 151-236 15-95 (108)
173 2hgm_A HNRPF protein, heteroge 99.6 3.8E-16 1.3E-20 131.9 6.8 79 150-234 41-121 (126)
174 2h6f_A Protein farnesyltransfe 99.6 8.1E-14 2.8E-18 145.4 25.5 229 472-707 98-344 (382)
175 4e6h_A MRNA 3'-END-processing 99.6 1.2E-11 4E-16 137.7 43.9 233 523-761 326-584 (679)
176 2hgn_A Heterogeneous nuclear r 99.6 3.2E-16 1.1E-20 135.3 5.7 82 149-236 44-125 (139)
177 4e6h_A MRNA 3'-END-processing 99.6 7.6E-12 2.6E-16 139.2 42.3 439 264-724 49-582 (679)
178 2dha_A FLJ20171 protein; RRM d 99.6 4.5E-16 1.6E-20 131.3 6.4 82 149-235 21-106 (123)
179 2dnq_A RNA-binding protein 4B; 99.6 1.1E-15 3.8E-20 123.1 8.4 76 150-236 7-82 (90)
180 3zzy_A Polypyrimidine tract-bi 99.6 1.5E-15 5.2E-20 127.6 9.0 76 152-235 29-107 (130)
181 2xs2_A Deleted in azoospermia- 99.6 7E-16 2.4E-20 127.7 6.7 80 150-235 8-87 (102)
182 2dgt_A RNA-binding protein 30; 99.6 2E-15 6.7E-20 122.2 9.2 75 150-235 9-83 (92)
183 2cpd_A Apobec-1 stimulating pr 99.6 2E-15 6.8E-20 124.1 9.3 77 149-236 13-91 (99)
184 2ytc_A PRE-mRNA-splicing facto 99.6 2E-15 6.8E-20 120.3 9.0 75 150-232 11-85 (85)
185 2hvz_A Splicing factor, argini 99.6 5.7E-16 2E-20 128.0 5.9 76 152-235 1-76 (101)
186 1x5p_A Negative elongation fac 99.6 3E-15 1E-19 122.4 10.1 75 150-235 14-88 (97)
187 3u4t_A TPR repeat-containing p 99.6 2.9E-13 1E-17 135.6 26.8 231 371-605 8-250 (272)
188 2kvi_A Nuclear polyadenylated 99.6 1.1E-15 3.9E-20 124.5 7.3 78 149-237 8-86 (96)
189 2diu_A KIAA0430 protein; struc 99.6 1.3E-15 4.4E-20 117.0 7.0 70 153-235 11-85 (96)
190 2dgu_A Heterogeneous nuclear r 99.6 2.3E-15 7.7E-20 124.7 8.7 76 150-236 10-85 (103)
191 4f02_A Polyadenylate-binding p 99.6 2.1E-15 7.1E-20 144.0 9.6 82 152-236 16-97 (213)
192 2f3j_A RNA and export factor b 99.6 1.7E-15 5.7E-20 138.2 8.4 82 150-235 87-168 (177)
193 1wg1_A KIAA1579 protein, homol 99.6 2.6E-15 8.9E-20 120.1 8.4 76 150-235 4-79 (88)
194 1sjr_A Polypyrimidine tract-bi 99.6 2E-15 6.9E-20 131.9 8.3 77 152-235 47-125 (164)
195 2e5i_A Heterogeneous nuclear r 99.6 3E-15 1E-19 125.7 9.0 74 153-235 27-103 (124)
196 2dnp_A RNA-binding protein 14; 99.6 2.6E-15 9E-20 120.8 8.3 75 150-235 8-82 (90)
197 3d2w_A TAR DNA-binding protein 99.6 2.8E-15 9.5E-20 119.6 8.3 74 150-235 10-85 (89)
198 2pe8_A Splicing factor 45; RRM 99.6 3.3E-15 1.1E-19 122.5 8.9 85 149-235 6-95 (105)
199 2ho1_A Type 4 fimbrial biogene 99.6 6.1E-13 2.1E-17 131.6 27.1 201 296-500 37-238 (252)
200 2i2y_A Fusion protein consists 99.6 2.3E-15 7.9E-20 134.5 8.2 78 150-235 72-149 (150)
201 2e44_A Insulin-like growth fac 99.6 2.6E-15 9E-20 122.7 7.4 78 150-234 14-92 (96)
202 3egn_A RNA-binding protein 40; 99.6 6.4E-16 2.2E-20 136.9 4.0 84 149-235 43-131 (143)
203 2e5g_A U6 snRNA-specific termi 99.6 4.2E-15 1.4E-19 120.7 8.5 76 151-235 8-83 (94)
204 2cqh_A IGF-II mRNA-binding pro 99.6 2.5E-15 8.5E-20 122.0 7.0 76 150-235 7-84 (93)
205 1xnf_A Lipoprotein NLPI; TPR, 99.6 8.8E-14 3E-18 139.7 19.9 121 308-430 17-140 (275)
206 2q7f_A YRRB protein; TPR, prot 99.6 1.8E-13 6.2E-18 134.5 21.6 201 295-500 22-222 (243)
207 1wf1_A RNA-binding protein RAL 99.6 1.1E-14 3.8E-19 122.2 10.8 74 151-235 27-101 (110)
208 2ho1_A Type 4 fimbrial biogene 99.6 9.2E-13 3.1E-17 130.3 26.8 208 541-754 37-245 (252)
209 2dnl_A Cytoplasmic polyadenyla 99.6 3.3E-15 1.1E-19 126.0 7.5 77 150-232 7-86 (114)
210 2vq2_A PILW, putative fimbrial 99.6 1.2E-12 4.1E-17 126.7 26.9 203 295-500 7-211 (225)
211 1xnf_A Lipoprotein NLPI; TPR, 99.6 8.7E-14 3E-18 139.7 19.1 249 341-599 15-269 (275)
212 2q7f_A YRRB protein; TPR, prot 99.6 2.6E-13 8.9E-18 133.3 21.9 203 330-537 22-224 (243)
213 3pgw_A U1-A; protein-RNA compl 99.6 3.9E-14 1.3E-18 142.4 16.1 76 149-232 205-281 (282)
214 2vq2_A PILW, putative fimbrial 99.6 3.1E-12 1.1E-16 123.7 28.6 203 330-535 7-211 (225)
215 3pgw_S U1-70K; protein-RNA com 99.5 1.6E-14 5.6E-19 151.6 12.5 84 150-236 101-184 (437)
216 2hzc_A Splicing factor U2AF 65 99.5 8.3E-15 2.8E-19 117.3 7.9 71 150-230 5-86 (87)
217 3beg_B Splicing factor, argini 99.5 7.9E-15 2.7E-19 123.7 7.1 74 151-234 16-94 (115)
218 1b7f_A Protein (SXL-lethal pro 99.5 9.3E-15 3.2E-19 134.4 8.3 83 150-235 2-84 (168)
219 1fxl_A Paraneoplastic encephal 99.5 1.3E-14 4.5E-19 133.3 9.2 82 151-235 2-83 (167)
220 4a1s_A PINS, partner of inscut 99.5 2.3E-13 7.8E-18 145.7 20.0 277 297-605 49-372 (411)
221 3md3_A Nuclear and cytoplasmic 99.5 1.7E-14 5.7E-19 132.5 9.3 80 150-232 86-165 (166)
222 3sf4_A G-protein-signaling mod 99.5 4.1E-13 1.4E-17 143.3 21.4 203 295-498 8-254 (406)
223 2cjk_A Nuclear polyadenylated 99.5 8.9E-15 3.1E-19 134.3 6.9 82 149-234 85-166 (167)
224 1wf0_A TDP-43, TAR DNA-binding 99.5 8.6E-15 2.9E-19 117.2 5.9 77 150-236 4-80 (88)
225 3tyt_A Heterogeneous nuclear r 99.5 2.2E-14 7.6E-19 134.8 9.1 77 150-234 3-80 (205)
226 4f02_A Polyadenylate-binding p 99.5 2E-14 6.9E-19 137.1 8.8 81 150-235 102-182 (213)
227 2bz2_A Negative elongation fac 99.5 2E-14 6.8E-19 121.9 7.8 75 150-235 38-112 (121)
228 2g4b_A Splicing factor U2AF 65 99.5 2.4E-14 8.3E-19 132.1 8.9 78 151-231 94-171 (172)
229 3ro2_A PINS homolog, G-protein 99.5 5.3E-13 1.8E-17 138.2 19.6 277 297-605 6-332 (338)
230 3sf4_A G-protein-signaling mod 99.5 6.3E-13 2.1E-17 141.9 20.7 303 435-769 8-365 (406)
231 2yh0_A Splicing factor U2AF 65 99.5 6.7E-14 2.3E-18 132.6 11.5 84 149-235 112-195 (198)
232 2ond_A Cleavage stimulation fa 99.5 8.2E-12 2.8E-16 127.4 27.9 217 264-500 33-270 (308)
233 4a1s_A PINS, partner of inscut 99.5 3.8E-13 1.3E-17 144.0 18.1 280 333-675 50-372 (411)
234 1l3k_A Heterogeneous nuclear r 99.5 4E-14 1.4E-18 133.9 9.3 83 149-235 11-93 (196)
235 2cjk_A Nuclear polyadenylated 99.5 3.8E-14 1.3E-18 130.1 8.8 81 150-235 2-82 (167)
236 2qfj_A FBP-interacting repress 99.5 3.4E-14 1.2E-18 136.7 8.7 85 148-235 122-206 (216)
237 3u1l_A PRE-mRNA-splicing facto 99.5 3.1E-14 1.1E-18 134.0 7.7 78 148-234 131-229 (240)
238 2voo_A Lupus LA protein; RNA-b 99.5 4.8E-14 1.6E-18 130.8 8.3 81 149-234 107-187 (193)
239 4abn_A Tetratricopeptide repea 99.5 1.3E-12 4.5E-17 141.8 20.6 193 295-493 101-314 (474)
240 2qfj_A FBP-interacting repress 99.5 6.1E-14 2.1E-18 135.0 8.2 86 147-235 24-109 (216)
241 3ro2_A PINS homolog, G-protein 99.5 1.9E-12 6.3E-17 134.0 20.0 276 438-745 7-332 (338)
242 3md3_A Nuclear and cytoplasmic 99.5 8.1E-14 2.8E-18 127.9 8.1 80 152-235 1-80 (166)
243 2ond_A Cleavage stimulation fa 99.5 4.4E-11 1.5E-15 122.0 29.2 218 313-535 33-270 (308)
244 3vtx_A MAMA; tetratricopeptide 99.5 1.5E-11 5.1E-16 114.9 23.6 166 295-464 4-169 (184)
245 1l3k_A Heterogeneous nuclear r 99.5 1.1E-13 3.9E-18 130.8 9.0 82 151-236 104-185 (196)
246 1b7f_A Protein (SXL-lethal pro 99.5 1.1E-13 3.7E-18 127.3 8.3 79 150-231 88-168 (168)
247 4abn_A Tetratricopeptide repea 99.4 5.7E-12 2E-16 136.7 23.0 215 522-742 84-318 (474)
248 3vtx_A MAMA; tetratricopeptide 99.4 2E-11 6.8E-16 114.0 23.7 167 330-500 4-170 (184)
249 3ulq_A Response regulator aspa 99.4 1E-11 3.5E-16 131.3 23.6 231 512-744 109-367 (383)
250 1fxl_A Paraneoplastic encephal 99.4 2E-13 6.8E-18 125.4 8.4 79 150-231 87-167 (167)
251 3ulq_A Response regulator aspa 99.4 1.6E-11 5.3E-16 129.9 24.3 229 306-534 22-292 (383)
252 1jmt_A Splicing factor U2AF 35 99.4 7.4E-14 2.5E-18 114.5 4.7 72 156-231 20-103 (104)
253 3v4m_A Splicing factor U2AF 65 99.4 2E-13 6.7E-18 112.0 7.1 85 150-237 4-100 (105)
254 3nmr_A Cugbp ELAV-like family 99.4 2.7E-13 9.2E-18 125.5 8.8 79 150-232 94-175 (175)
255 3nmr_A Cugbp ELAV-like family 99.4 1.8E-13 6.2E-18 126.7 7.6 83 150-235 2-89 (175)
256 1fje_B Nucleolin RBD12, protei 99.4 2.7E-13 9.1E-18 125.4 8.6 77 150-234 98-174 (175)
257 2dit_A HIV TAT specific factor 99.4 5.4E-13 1.8E-17 111.9 9.3 80 149-235 13-103 (112)
258 3nf1_A KLC 1, kinesin light ch 99.4 1.8E-12 6.1E-17 132.7 14.5 170 295-464 26-223 (311)
259 3pgw_A U1-A; protein-RNA compl 99.4 3.8E-13 1.3E-17 135.1 8.9 82 148-235 6-91 (282)
260 3nf1_A KLC 1, kinesin light ch 99.4 1.6E-12 5.5E-17 132.9 13.4 170 330-499 26-223 (311)
261 3sde_A Paraspeckle component 1 99.4 9.2E-13 3.2E-17 129.9 9.7 79 147-234 18-96 (261)
262 1fje_B Nucleolin RBD12, protei 99.4 1.8E-13 6.3E-18 126.5 4.2 82 149-235 11-92 (175)
263 3ue2_A Poly(U)-binding-splicin 99.4 4.8E-13 1.6E-17 111.7 6.1 86 149-236 18-111 (118)
264 2adc_A Polypyrimidine tract-bi 99.4 9.1E-13 3.1E-17 127.2 9.0 78 149-234 32-110 (229)
265 2ghp_A U4/U6 snRNA-associated 99.4 6.7E-13 2.3E-17 134.0 8.3 82 149-234 208-291 (292)
266 3smz_A Protein raver-1, ribonu 99.4 1.2E-12 4.1E-17 131.6 9.3 84 150-237 183-267 (284)
267 3tyt_A Heterogeneous nuclear r 99.4 7.7E-13 2.6E-17 124.3 7.1 77 150-231 122-204 (205)
268 3smz_A Protein raver-1, ribonu 99.3 1.5E-12 5.2E-17 130.8 9.5 83 150-235 94-176 (284)
269 3q15_A PSP28, response regulat 99.3 9.6E-11 3.3E-15 123.5 23.2 230 512-744 107-364 (378)
270 3q15_A PSP28, response regulat 99.3 1.7E-10 5.9E-15 121.6 25.0 236 298-534 12-289 (378)
271 1qm9_A Polypyrimidine tract-bi 99.3 1.1E-12 3.6E-17 124.0 6.9 76 151-234 3-79 (198)
272 1hz4_A MALT regulatory protein 99.3 7.6E-10 2.6E-14 116.4 28.4 234 300-533 18-280 (373)
273 4gyw_A UDP-N-acetylglucosamine 99.3 7.1E-11 2.4E-15 133.1 21.1 166 295-464 8-173 (723)
274 2g4b_A Splicing factor U2AF 65 99.3 3.8E-12 1.3E-16 117.3 8.3 76 149-234 2-88 (172)
275 4gyw_A UDP-N-acetylglucosamine 99.3 1.1E-10 3.6E-15 131.8 21.4 167 329-499 7-173 (723)
276 3as5_A MAMA; tetratricopeptide 99.3 2.3E-10 7.9E-15 106.5 20.4 164 297-464 9-172 (186)
277 1hz4_A MALT regulatory protein 99.3 9.6E-10 3.3E-14 115.6 27.3 165 335-499 18-202 (373)
278 2adc_A Polypyrimidine tract-bi 99.3 4.8E-12 1.6E-16 122.1 8.3 78 149-234 149-228 (229)
279 1qm9_A Polypyrimidine tract-bi 99.3 3.5E-12 1.2E-16 120.5 7.1 77 150-234 119-197 (198)
280 2d9o_A DNAJ (HSP40) homolog, s 99.3 7.4E-12 2.5E-16 100.8 7.8 65 161-235 27-91 (100)
281 3as5_A MAMA; tetratricopeptide 99.3 3.7E-10 1.3E-14 105.1 20.5 163 333-499 10-172 (186)
282 3sde_A Paraspeckle component 1 99.3 4.9E-12 1.7E-16 124.7 7.2 83 149-235 94-180 (261)
283 2yh0_A Splicing factor U2AF 65 99.3 8.8E-12 3E-16 117.9 8.6 75 150-234 3-88 (198)
284 4i17_A Hypothetical protein; T 99.3 6E-10 2.1E-14 107.9 21.6 206 295-512 6-220 (228)
285 2ghp_A U4/U6 snRNA-associated 99.2 7.5E-12 2.6E-16 126.3 7.9 84 149-236 115-199 (292)
286 3tht_A Alkylated DNA repair pr 99.2 1.2E-11 4.1E-16 123.4 8.0 75 149-232 16-97 (345)
287 4i17_A Hypothetical protein; T 99.2 1.4E-09 4.8E-14 105.3 22.5 196 329-536 5-210 (228)
288 3edt_B KLC 2, kinesin light ch 99.2 2E-10 6.7E-15 115.4 15.1 226 309-535 14-281 (283)
289 3s6e_A RNA-binding protein 39; 99.2 2.6E-11 8.9E-16 100.3 6.9 63 166-235 32-94 (114)
290 3edt_B KLC 2, kinesin light ch 99.2 2.5E-10 8.7E-15 114.5 14.5 228 342-570 12-281 (283)
291 3dra_A Protein farnesyltransfe 99.2 1E-08 3.5E-13 102.3 25.3 217 264-499 50-286 (306)
292 2dnr_A Synaptojanin-1; RRM dom 99.1 7.8E-11 2.7E-15 89.8 6.9 74 149-234 5-86 (91)
293 1qqe_A Vesicular transport pro 99.1 2E-09 6.7E-14 108.7 18.7 160 340-499 46-227 (292)
294 3dra_A Protein farnesyltransfe 99.1 5.8E-08 2E-12 96.8 27.3 222 308-534 44-286 (306)
295 2uy1_A Cleavage stimulation fa 99.1 2.8E-07 9.7E-12 99.6 34.9 369 310-744 28-412 (493)
296 1owx_A Lupus LA protein, SS-B, 99.1 1.9E-10 6.5E-15 94.7 7.5 82 146-234 13-96 (121)
297 3qky_A Outer membrane assembly 99.1 5.8E-09 2E-13 103.4 19.9 186 295-500 14-224 (261)
298 2uy1_A Cleavage stimulation fa 99.1 3.4E-07 1.2E-11 99.0 35.2 384 309-773 7-406 (493)
299 1qqe_A Vesicular transport pro 99.1 4.9E-09 1.7E-13 105.7 18.8 199 299-499 40-268 (292)
300 3rjv_A Putative SEL1 repeat pr 99.0 1.5E-08 5.1E-13 96.6 20.2 176 314-501 4-198 (212)
301 3urz_A Uncharacterized protein 99.0 7.1E-09 2.4E-13 98.5 17.9 188 299-513 7-197 (208)
302 3qky_A Outer membrane assembly 99.0 1.2E-08 4E-13 101.1 20.1 213 329-561 13-252 (261)
303 3urz_A Uncharacterized protein 99.0 1.1E-08 3.7E-13 97.2 18.9 190 333-549 6-198 (208)
304 2fo7_A Synthetic consensus TPR 99.0 1.3E-08 4.6E-13 88.6 17.8 130 298-430 3-132 (136)
305 3rjv_A Putative SEL1 repeat pr 99.0 4.1E-08 1.4E-12 93.5 21.5 178 264-467 3-199 (212)
306 2pzi_A Probable serine/threoni 99.0 2.7E-09 9.3E-14 121.1 15.4 152 308-464 403-562 (681)
307 2fo7_A Synthetic consensus TPR 99.0 2.3E-08 7.8E-13 87.0 17.7 130 613-745 3-132 (136)
308 3mv2_B Coatomer subunit epsilo 99.0 6E-08 2.1E-12 95.5 22.2 178 560-744 85-281 (310)
309 3mv2_B Coatomer subunit epsilo 99.0 6E-08 2E-12 95.5 22.0 144 385-533 85-238 (310)
310 1ufw_A Synaptojanin 2; RNP dom 99.0 7.2E-10 2.5E-14 84.8 6.3 75 147-233 11-94 (95)
311 2pzi_A Probable serine/threoni 98.9 7.4E-09 2.5E-13 117.5 16.2 174 552-731 402-583 (681)
312 4ga2_A E3 SUMO-protein ligase 98.9 2.7E-09 9.2E-14 95.3 10.0 82 370-453 35-116 (150)
313 2yhc_A BAMD, UPF0169 lipoprote 98.9 6.8E-08 2.3E-12 93.1 20.6 187 295-501 3-214 (225)
314 4ga2_A E3 SUMO-protein ligase 98.9 8.8E-09 3E-13 91.9 12.9 134 264-415 14-148 (150)
315 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.2E-07 3.9E-12 91.4 21.6 190 330-538 3-216 (225)
316 2ifu_A Gamma-SNAP; membrane fu 98.9 2.2E-08 7.4E-13 101.8 16.5 164 309-498 4-182 (307)
317 3q7a_A Farnesyltransferase alp 98.9 2.2E-07 7.6E-12 93.4 23.5 169 264-451 71-257 (349)
318 3qou_A Protein YBBN; thioredox 98.9 4.2E-08 1.4E-12 98.5 18.0 165 295-463 116-282 (287)
319 2r5s_A Uncharacterized protein 98.9 1.5E-08 5.1E-13 93.4 13.0 160 299-462 9-170 (176)
320 3qou_A Protein YBBN; thioredox 98.9 4.2E-08 1.4E-12 98.4 17.3 168 329-499 115-283 (287)
321 3q7a_A Farnesyltransferase alp 98.9 8.1E-07 2.8E-11 89.4 26.3 175 308-487 66-258 (349)
322 2r5s_A Uncharacterized protein 98.9 2.1E-08 7.1E-13 92.4 13.8 162 333-498 8-171 (176)
323 2ifu_A Gamma-SNAP; membrane fu 98.9 2.5E-08 8.4E-13 101.4 15.4 199 343-568 3-222 (307)
324 2vsy_A XCC0866; transferase, g 98.9 4.6E-08 1.6E-12 109.0 18.9 151 263-431 5-158 (568)
325 2vsy_A XCC0866; transferase, g 98.9 4.8E-08 1.6E-12 108.9 18.4 155 309-467 2-159 (568)
326 4gco_A Protein STI-1; structur 98.8 7.4E-08 2.5E-12 82.8 13.8 109 296-407 13-121 (126)
327 3dxb_A Thioredoxin N-terminall 98.8 6.5E-09 2.2E-13 99.5 6.2 73 163-237 141-216 (222)
328 4f3v_A ESX-1 secretion system 98.7 1.8E-07 6.2E-12 90.9 15.4 186 264-466 23-238 (282)
329 3dss_A Geranylgeranyl transfer 98.7 5.8E-06 2E-10 82.8 26.8 167 264-449 47-240 (331)
330 1hh8_A P67PHOX, NCF-2, neutrop 98.7 7.7E-07 2.6E-11 84.6 19.3 129 298-431 8-151 (213)
331 3u3w_A Transcriptional activat 98.7 3.4E-07 1.1E-11 92.3 17.2 162 338-499 82-265 (293)
332 4gco_A Protein STI-1; structur 98.7 4E-07 1.4E-11 78.1 15.2 97 333-431 15-111 (126)
333 2qfc_A PLCR protein; TPR, HTH, 98.7 7.4E-07 2.5E-11 89.7 19.4 127 372-498 121-264 (293)
334 1hh8_A P67PHOX, NCF-2, neutrop 98.7 8.8E-07 3E-11 84.2 18.7 126 614-745 9-150 (213)
335 3dss_A Geranylgeranyl transfer 98.7 1.7E-05 5.7E-10 79.5 28.1 190 306-500 39-267 (331)
336 3u3w_A Transcriptional activat 98.7 3E-06 1E-10 85.2 23.1 162 371-532 80-263 (293)
337 1a17_A Serine/threonine protei 98.7 7.4E-07 2.5E-11 80.7 16.7 129 297-428 14-144 (166)
338 3gyz_A Chaperone protein IPGC; 98.7 1.1E-07 3.7E-12 84.3 10.3 96 298-395 38-133 (151)
339 1p5q_A FKBP52, FK506-binding p 98.6 7.1E-08 2.4E-12 99.1 10.1 132 295-428 146-292 (336)
340 1a17_A Serine/threonine protei 98.6 1.4E-06 4.7E-11 78.9 17.2 130 612-744 14-145 (166)
341 2qfc_A PLCR protein; TPR, HTH, 98.6 1.7E-06 5.7E-11 87.1 19.1 164 370-533 79-264 (293)
342 1na0_A Designed protein CTPR3; 98.6 1.5E-06 5.1E-11 74.1 16.0 112 297-411 10-121 (125)
343 2c2l_A CHIP, carboxy terminus 98.6 2.1E-07 7.2E-12 92.9 11.8 98 296-395 4-101 (281)
344 2c2l_A CHIP, carboxy terminus 98.6 2.6E-07 9E-12 92.2 12.3 99 330-430 3-101 (281)
345 3gyz_A Chaperone protein IPGC; 98.6 4E-07 1.4E-11 80.7 12.1 95 368-464 38-132 (151)
346 4f3v_A ESX-1 secretion system 98.6 7.7E-07 2.6E-11 86.5 14.8 189 308-500 18-237 (282)
347 3gw4_A Uncharacterized protein 98.6 4.9E-07 1.7E-11 85.2 13.2 121 307-428 3-134 (203)
348 2vgx_A Chaperone SYCD; alterna 98.6 6.1E-07 2.1E-11 79.5 12.8 99 295-395 20-118 (148)
349 2vyi_A SGTA protein; chaperone 98.6 1.5E-06 5E-11 74.8 14.9 118 296-416 12-129 (131)
350 1na0_A Designed protein CTPR3; 98.6 3.1E-06 1.1E-10 72.0 16.7 116 646-764 9-124 (125)
351 2lni_A Stress-induced-phosphop 98.6 1.3E-06 4.4E-11 75.6 14.5 118 295-415 15-132 (133)
352 3gw4_A Uncharacterized protein 98.6 6.6E-07 2.2E-11 84.3 13.4 156 342-498 3-174 (203)
353 2e2e_A Formate-dependent nitri 98.5 1E-06 3.5E-11 81.0 14.2 117 264-397 27-146 (177)
354 2lni_A Stress-induced-phosphop 98.5 1.4E-06 4.8E-11 75.3 14.5 117 330-449 15-131 (133)
355 2vyi_A SGTA protein; chaperone 98.5 3E-06 1E-10 72.8 16.3 118 647-767 13-130 (131)
356 2vgx_A Chaperone SYCD; alterna 98.5 3.8E-07 1.3E-11 80.9 10.2 99 330-430 20-118 (148)
357 2e2e_A Formate-dependent nitri 98.5 8.7E-07 3E-11 81.5 12.9 119 588-709 22-143 (177)
358 2xcb_A PCRH, regulatory protei 98.5 5.9E-07 2E-11 79.1 10.8 98 296-395 18-115 (142)
359 1p5q_A FKBP52, FK506-binding p 98.5 2.2E-06 7.5E-11 87.9 16.8 132 611-744 147-293 (336)
360 2fbn_A 70 kDa peptidylprolyl i 98.5 3.2E-07 1.1E-11 86.2 8.5 86 403-490 90-175 (198)
361 3upv_A Heat shock protein STI1 98.5 4.2E-06 1.4E-10 71.7 14.8 97 647-745 5-101 (126)
362 2fbn_A 70 kDa peptidylprolyl i 98.5 4.1E-07 1.4E-11 85.5 8.9 131 612-744 39-185 (198)
363 3upv_A Heat shock protein STI1 98.4 5E-06 1.7E-10 71.2 14.6 97 297-395 5-101 (126)
364 4gcn_A Protein STI-1; structur 98.4 4.7E-06 1.6E-10 71.5 13.7 108 647-757 9-122 (127)
365 1elw_A TPR1-domain of HOP; HOP 98.4 1.3E-05 4.5E-10 67.2 15.9 97 297-395 5-101 (118)
366 3sz7_A HSC70 cochaperone (SGT) 98.4 6E-06 2.1E-10 74.6 14.2 99 296-396 11-109 (164)
367 2xcb_A PCRH, regulatory protei 98.4 5.5E-06 1.9E-10 72.7 13.3 98 331-430 18-115 (142)
368 4gcn_A Protein STI-1; structur 98.3 7.2E-06 2.5E-10 70.3 13.5 56 337-393 14-69 (127)
369 3sz7_A HSC70 cochaperone (SGT) 98.3 8.8E-06 3E-10 73.5 14.6 96 647-744 12-107 (164)
370 1elr_A TPR2A-domain of HOP; HO 98.3 6.2E-06 2.1E-10 70.8 12.8 114 647-763 5-124 (131)
371 3q49_B STIP1 homology and U bo 98.3 1.5E-05 5.3E-10 69.2 15.3 99 644-744 7-105 (137)
372 1elw_A TPR1-domain of HOP; HOP 98.3 2.5E-05 8.7E-10 65.4 15.9 95 648-744 6-100 (118)
373 4b4t_Q 26S proteasome regulato 98.3 3.1E-05 1.1E-09 82.7 19.9 126 303-428 11-162 (434)
374 2l9w_A U4/U6 snRNA-associated- 98.3 3.2E-06 1.1E-10 65.8 8.4 72 151-231 21-97 (117)
375 3q49_B STIP1 homology and U bo 98.3 1.2E-05 4.1E-10 69.9 13.6 96 296-393 9-104 (137)
376 4b4t_Q 26S proteasome regulato 98.3 2.4E-05 8.1E-10 83.7 18.5 196 338-533 11-243 (434)
377 2dba_A Smooth muscle cell asso 98.3 2.7E-05 9.1E-10 68.6 15.6 97 296-395 28-128 (148)
378 2dba_A Smooth muscle cell asso 98.3 2.2E-05 7.4E-10 69.2 15.0 115 328-446 25-143 (148)
379 1dce_A Protein (RAB geranylger 98.2 2.8E-05 9.4E-10 85.4 18.7 169 264-451 46-241 (567)
380 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.7E-06 5.8E-11 93.0 8.8 125 295-421 267-405 (457)
381 1hxi_A PEX5, peroxisome target 98.2 7.9E-06 2.7E-10 69.3 11.3 95 299-395 20-114 (121)
382 1elr_A TPR2A-domain of HOP; HO 98.2 1.1E-05 3.7E-10 69.3 12.1 98 297-395 5-108 (131)
383 2kck_A TPR repeat; tetratricop 98.2 1.3E-05 4.5E-10 66.5 12.1 96 298-395 8-106 (112)
384 1hxi_A PEX5, peroxisome target 98.2 1.1E-05 3.8E-10 68.4 11.5 94 649-744 20-113 (121)
385 2kck_A TPR repeat; tetratricop 98.2 1.6E-05 5.5E-10 65.9 11.4 97 647-745 7-106 (112)
386 1wao_1 Serine/threonine protei 98.1 1.5E-05 5.1E-10 85.9 13.5 110 264-390 23-134 (477)
387 3ro3_A PINS homolog, G-protein 98.1 1.5E-05 5.3E-10 71.3 11.7 97 297-393 10-116 (164)
388 3ro3_A PINS homolog, G-protein 98.1 1.6E-05 5.6E-10 71.1 11.5 27 333-359 11-37 (164)
389 1dce_A Protein (RAB geranylger 98.1 0.00012 4.1E-09 80.3 20.1 173 592-769 45-244 (567)
390 2xev_A YBGF; tetratricopeptide 98.1 5.9E-05 2E-09 64.6 14.2 94 300-395 6-105 (129)
391 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 3.2E-05 1.1E-09 83.0 15.1 143 310-455 248-404 (457)
392 2hr2_A Hypothetical protein; a 98.1 3.6E-05 1.2E-09 67.2 12.2 94 298-394 13-130 (159)
393 3rkv_A Putative peptidylprolyl 98.1 3.6E-05 1.2E-09 69.2 12.9 64 681-745 63-126 (162)
394 1wao_1 Serine/threonine protei 98.1 2.9E-06 1E-10 91.5 6.5 121 302-425 12-134 (477)
395 3k9i_A BH0479 protein; putativ 98.1 1.1E-05 3.7E-10 68.1 8.5 86 659-745 3-90 (117)
396 1ihg_A Cyclophilin 40; ppiase 98.1 3.2E-05 1.1E-09 80.2 13.3 139 297-457 224-362 (370)
397 2hr2_A Hypothetical protein; a 98.0 4.9E-05 1.7E-09 66.4 12.2 97 332-429 12-130 (159)
398 2xev_A YBGF; tetratricopeptide 98.0 0.00017 6E-09 61.5 15.8 91 337-429 8-104 (129)
399 3rkv_A Putative peptidylprolyl 98.0 2.4E-05 8.2E-10 70.4 10.4 98 297-395 12-126 (162)
400 1ihg_A Cyclophilin 40; ppiase 98.0 4.9E-05 1.7E-09 78.7 13.8 140 576-737 223-362 (370)
401 3k9i_A BH0479 protein; putativ 98.0 1E-05 3.4E-10 68.2 7.1 86 309-395 3-90 (117)
402 2if4_A ATFKBP42; FKBP-like, al 98.0 1.6E-05 5.3E-10 81.6 9.7 148 297-465 180-328 (338)
403 1klx_A Cysteine rich protein B 98.0 0.00013 4.6E-09 63.2 13.4 111 310-431 9-127 (138)
404 2if4_A ATFKBP42; FKBP-like, al 97.9 2.6E-05 8.9E-10 79.9 9.6 148 332-500 180-328 (338)
405 1klx_A Cysteine rich protein B 97.9 0.00023 7.9E-09 61.7 13.5 111 345-466 9-127 (138)
406 3n71_A Histone lysine methyltr 97.8 7.4E-05 2.5E-09 79.8 11.0 88 306-393 319-420 (490)
407 2l6j_A TPR repeat-containing p 97.8 0.00016 5.6E-09 59.7 10.6 93 680-775 3-102 (111)
408 1zu2_A Mitochondrial import re 97.8 6.4E-05 2.2E-09 65.5 8.0 62 698-762 63-135 (158)
409 3n71_A Histone lysine methyltr 97.7 0.0002 6.7E-09 76.6 13.0 124 376-499 319-463 (490)
410 2kat_A Uncharacterized protein 97.7 0.00015 5.3E-09 60.5 9.5 81 264-360 2-82 (115)
411 1zu2_A Mitochondrial import re 97.7 0.00015 5E-09 63.2 9.0 92 261-370 16-128 (158)
412 1wey_A Calcipressin 1; structu 97.7 0.00013 4.5E-09 57.0 7.5 73 152-233 6-83 (104)
413 2l6j_A TPR repeat-containing p 97.6 5.3E-05 1.8E-09 62.7 5.0 92 646-739 4-101 (111)
414 2kat_A Uncharacterized protein 97.6 0.0004 1.4E-08 57.9 9.9 78 665-744 4-81 (115)
415 1na3_A Designed protein CTPR2; 97.5 0.0009 3.1E-08 52.6 11.1 60 649-709 12-71 (91)
416 1na3_A Designed protein CTPR2; 97.5 0.00093 3.2E-08 52.5 11.0 60 369-429 12-71 (91)
417 4ady_A RPN2, 26S proteasome re 97.5 0.23 7.7E-06 56.3 32.9 276 481-765 384-675 (963)
418 3ma5_A Tetratricopeptide repea 97.2 0.0013 4.4E-08 53.1 8.8 62 681-743 7-68 (100)
419 3ma5_A Tetratricopeptide repea 97.1 0.0021 7.2E-08 51.8 9.2 62 366-428 7-68 (100)
420 3mkq_A Coatomer beta'-subunit; 97.1 0.017 5.7E-07 67.1 19.8 169 545-773 633-805 (814)
421 3u64_A Protein TP_0956; tetrat 97.0 0.063 2.1E-06 51.5 18.9 94 382-475 179-281 (301)
422 2dhx_A Poly (ADP-ribose) polym 96.9 0.0041 1.4E-07 48.4 8.0 70 151-232 8-82 (104)
423 1whv_A Poly(A)-specific ribonu 96.7 0.0036 1.2E-07 47.9 6.4 53 152-214 17-69 (100)
424 3mkq_B Coatomer subunit alpha; 96.7 0.11 3.8E-06 45.8 16.6 104 337-461 11-114 (177)
425 1wy6_A Hypothetical protein ST 96.7 0.21 7.1E-06 41.1 17.2 149 578-748 7-157 (172)
426 3ly7_A Transcriptional activat 96.7 0.014 4.9E-07 58.5 12.2 64 330-395 276-339 (372)
427 3mkq_A Coatomer beta'-subunit; 96.7 0.054 1.8E-06 62.8 19.4 75 335-427 633-707 (814)
428 2kc7_A BFR218_protein; tetratr 96.7 0.0043 1.5E-07 49.6 7.2 57 303-360 7-64 (99)
429 3qww_A SET and MYND domain-con 96.6 0.0039 1.3E-07 65.3 8.3 86 343-428 310-409 (433)
430 3ly7_A Transcriptional activat 96.6 0.048 1.7E-06 54.7 15.5 72 679-754 275-346 (372)
431 2kc7_A BFR218_protein; tetratr 96.6 0.005 1.7E-07 49.3 7.0 54 655-709 9-63 (99)
432 3qww_A SET and MYND domain-con 96.5 0.0044 1.5E-07 64.9 8.1 87 308-394 310-410 (433)
433 3qwp_A SET and MYND domain-con 96.5 0.0087 3E-07 62.8 10.3 91 303-393 294-398 (429)
434 3lvg_A Clathrin heavy chain 1; 96.4 2.8E-06 9.6E-11 86.0 -16.0 175 295-484 82-276 (624)
435 3qwp_A SET and MYND domain-con 96.3 0.013 4.3E-07 61.6 10.2 90 655-744 296-399 (429)
436 3lvg_A Clathrin heavy chain 1; 96.3 3.8E-07 1.3E-11 92.2 -23.1 117 296-427 54-170 (624)
437 3mkq_B Coatomer subunit alpha; 96.2 0.27 9.2E-06 43.3 16.2 100 411-531 15-114 (177)
438 1wy6_A Hypothetical protein ST 96.2 0.41 1.4E-05 39.4 16.1 141 306-468 17-157 (172)
439 3ctr_A Poly(A)-specific ribonu 96.2 0.0064 2.2E-07 46.7 4.9 53 152-214 7-59 (101)
440 1uw4_A UPF3X; nonsense mediate 96.1 0.024 8E-07 43.7 7.8 70 152-223 2-72 (91)
441 3u64_A Protein TP_0956; tetrat 96.1 0.096 3.3E-06 50.3 13.6 92 347-440 179-281 (301)
442 3bee_A Putative YFRE protein; 95.9 0.049 1.7E-06 42.8 9.3 64 680-744 5-71 (93)
443 1pc2_A Mitochondria fission pr 95.8 0.074 2.5E-06 45.7 10.4 86 662-751 14-104 (152)
444 4ady_A RPN2, 26S proteasome re 95.7 3.7 0.00013 46.6 34.3 311 445-768 383-723 (963)
445 1wwh_A Nucleoporin 35, nucleop 95.7 0.036 1.2E-06 44.8 7.5 70 151-231 24-94 (119)
446 2v5f_A Prolyl 4-hydroxylase su 95.7 0.09 3.1E-06 42.3 10.2 63 332-394 6-74 (104)
447 1pc2_A Mitochondria fission pr 95.7 0.086 2.9E-06 45.3 10.3 83 312-395 14-100 (152)
448 4gns_B Protein CSD3, chitin bi 95.6 3.6 0.00012 45.8 27.8 127 403-532 250-397 (754)
449 3bee_A Putative YFRE protein; 95.5 0.12 4.2E-06 40.5 10.1 67 644-711 4-73 (93)
450 2v5f_A Prolyl 4-hydroxylase su 95.5 0.12 4.2E-06 41.5 10.5 64 647-710 6-75 (104)
451 3pq1_A Poly(A) RNA polymerase; 95.3 0.019 6.6E-07 59.4 5.9 56 151-213 53-108 (464)
452 4h7y_A Dual specificity protei 95.0 0.42 1.4E-05 40.4 11.9 55 413-468 72-126 (161)
453 4b4t_P 26S proteasome regulato 93.8 5.4 0.00018 41.7 20.6 188 310-498 30-245 (445)
454 3p3d_A Nucleoporin 53; structu 93.7 0.073 2.5E-06 43.6 4.6 79 153-235 9-100 (132)
455 4b4t_P 26S proteasome regulato 93.3 6.2 0.00021 41.3 20.1 50 450-499 30-84 (445)
456 4h7y_A Dual specificity protei 93.1 0.86 2.9E-05 38.5 10.1 54 379-433 73-126 (161)
457 1nzn_A CGI-135 protein, fissio 92.9 0.42 1.5E-05 39.3 8.1 83 312-395 17-103 (126)
458 1nzn_A CGI-135 protein, fissio 92.9 1.1 3.8E-05 36.9 10.5 86 662-750 17-106 (126)
459 2wpv_A GET4, UPF0363 protein Y 92.8 7.8 0.00027 37.8 18.8 25 680-704 133-157 (312)
460 2kn4_A Immunoglobulin G-bindin 92.7 0.071 2.4E-06 47.0 3.5 32 180-214 2-33 (158)
461 2l08_A Regulator of nonsense t 92.5 0.18 6.1E-06 39.0 5.0 71 152-224 10-81 (97)
462 4gns_B Protein CSD3, chitin bi 92.2 0.57 1.9E-05 52.2 10.5 52 712-765 609-660 (754)
463 3txn_A 26S proteasome regulato 91.7 13 0.00043 37.9 21.3 93 441-533 104-208 (394)
464 3txn_A 26S proteasome regulato 90.4 17 0.00057 37.0 23.6 220 512-746 105-344 (394)
465 4fhn_B Nucleoporin NUP120; pro 90.2 3.8 0.00013 49.0 15.8 192 336-534 817-1049(1139)
466 2ff4_A Probable regulatory pro 89.5 1.4 4.7E-05 45.3 10.0 68 685-753 175-247 (388)
467 3ffl_A Anaphase-promoting comp 89.0 2.9 9.8E-05 36.2 9.7 62 298-359 22-91 (167)
468 3lpz_A GET4 (YOR164C homolog); 88.3 21 0.00071 35.1 23.1 111 369-494 38-159 (336)
469 3lpz_A GET4 (YOR164C homolog); 87.7 22 0.00076 34.9 22.0 113 297-424 36-159 (336)
470 3ffl_A Anaphase-promoting comp 86.2 3.5 0.00012 35.7 8.6 117 334-463 23-149 (167)
471 4fhn_B Nucleoporin NUP120; pro 85.8 11 0.00038 44.9 16.1 187 580-773 816-1042(1139)
472 3o48_A Mitochondria fission 1 85.6 9.7 0.00033 31.5 10.6 66 679-744 38-106 (134)
473 2ff4_A Probable regulatory pro 85.2 4.9 0.00017 41.1 11.1 57 406-463 176-232 (388)
474 1v54_E Cytochrome C oxidase po 84.5 13 0.00043 29.0 10.0 47 699-745 28-74 (109)
475 2i2y_A Fusion protein consists 84.3 0.31 1E-05 42.3 1.3 42 191-234 10-51 (150)
476 2y69_E Cytochrome C oxidase su 84.0 5.3 0.00018 32.8 8.1 45 294-339 86-130 (152)
477 1y8m_A FIS1; mitochondria, unk 83.6 19 0.00063 30.2 12.6 71 678-750 36-109 (144)
478 4b4t_R RPN7, 26S proteasome re 83.3 14 0.00048 38.3 13.8 98 438-535 133-237 (429)
479 4b4t_R RPN7, 26S proteasome re 82.8 11 0.00037 39.2 12.6 59 334-392 134-194 (429)
480 3o48_A Mitochondria fission 1 82.1 15 0.0005 30.4 10.2 67 644-710 38-107 (134)
481 2y69_E Cytochrome C oxidase su 81.0 16 0.00056 30.0 9.9 60 699-759 71-130 (152)
482 2h8h_A Proto-oncogene tyrosine 80.8 0.32 1.1E-05 52.8 0.0 13 163-175 155-167 (535)
483 2qx5_A Nucleoporin NIC96; mRNA 79.7 76 0.0026 34.7 18.8 19 477-495 300-318 (661)
484 2p58_C Putative type III secre 78.5 13 0.00046 28.6 8.1 78 311-396 22-99 (116)
485 2h8h_A Proto-oncogene tyrosine 77.1 0.48 1.7E-05 51.4 0.0 16 154-169 150-165 (535)
486 2uwj_G Type III export protein 76.1 13 0.00044 28.7 7.4 78 311-396 21-98 (115)
487 1qsa_A Protein (soluble lytic 74.9 1E+02 0.0034 33.6 36.7 52 586-638 295-346 (618)
488 1v54_E Cytochrome C oxidase po 74.9 28 0.00094 27.1 9.7 50 346-395 25-74 (109)
489 2wpv_A GET4, UPF0363 protein Y 73.8 69 0.0023 31.2 22.3 26 435-460 133-158 (312)
490 3eiq_C Programmed cell death p 72.5 11 0.00036 37.7 8.3 64 614-678 220-285 (358)
491 3esl_A Checkpoint serine/threo 72.2 26 0.00088 31.4 9.8 55 345-399 93-148 (202)
492 3d45_A Poly(A)-specific ribonu 71.0 6.5 0.00022 41.7 6.8 53 152-214 441-493 (507)
493 1y8m_A FIS1; mitochondria, unk 70.1 48 0.0016 27.8 12.7 47 349-395 60-106 (144)
494 2g0c_A ATP-dependent RNA helic 69.9 11 0.00037 27.7 6.0 60 161-232 11-75 (76)
495 2p58_C Putative type III secre 66.9 31 0.0011 26.7 7.6 80 344-431 20-99 (116)
496 3ltm_A Alpha-REP4; protein eng 66.5 73 0.0025 28.6 17.1 202 265-486 2-203 (211)
497 3mv2_A Coatomer subunit alpha; 65.1 65 0.0022 31.3 11.6 142 621-779 124-271 (325)
498 1twf_A B220, DNA-directed RNA 64.0 1.4 4.9E-05 53.6 0.0 148 6-153 1584-1731(1733)
499 2uwj_G Type III export protein 63.4 30 0.001 26.7 7.0 80 344-431 19-98 (115)
500 3esl_A Checkpoint serine/threo 63.1 64 0.0022 28.9 10.4 86 627-714 60-148 (202)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-39 Score=366.69 Aligned_cols=438 Identities=11% Similarity=0.007 Sum_probs=268.5
Q ss_pred CCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (798)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (798)
++...|+.++..|.+.|++++|+.+|++|... .|+..+++.++.+|.+.|++++|+.+|+++... ..+..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 45677899999999999999999999999965 678899999999999999999999999998653 56899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc---------------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 003749 374 GGFAKMGNAEAADHWFEEAKER---------------HATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDI 438 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 438 (798)
.+|.+.|++++|+++|+++... +...+..+|+.++.+|.+.|++++|.++|++|.+.+ +.+...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHH
Confidence 9999999999999999964322 112357899999999999999999999999999875 334555
Q ss_pred HHHHHHH--------------------------------------HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 003749 439 YHMMMDG--------------------------------------YTIIGNEEKCLIVFERLKECGFSPSIISYGCLINL 480 (798)
Q Consensus 439 ~~~l~~~--------------------------------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 480 (798)
+..+... |.+.|++++|+++|+++.+. .++..+|+.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 5555433 33445555555555554432 2345555555555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHH
Q 003749 481 YTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRA 560 (798)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 560 (798)
|.+.|++++|+++|+++.+.+ ..+..++..++.+|.+.|++++|..+|+++.+.... +..+|+.++.+|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHhccHHHH
Confidence 555555555555555554433 123444555555555555555555555555443222 444555555555555555555
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003749 561 IHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLA 640 (798)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 640 (798)
.++|+++.+.... +..+|..++.+|.+.|++++|+++|+++.+.+.. +..+|+.++.+|.+.|++++|+++|+++.+.
T Consensus 393 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555443221 3444555555555555555555555555443322 4445555555555555555555555555443
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 003749 641 GISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE----GLELD--VFTYEALLKACCKSGRMQSALAVTKEMSAQKIPR 714 (798)
Q Consensus 641 ~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 714 (798)
. ..+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|..+++++.+.+ +.
T Consensus 471 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~ 548 (597)
T 2xpi_A 471 F-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TN 548 (597)
T ss_dssp C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SC
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC
Confidence 2 224445555555555555555555555555443 33344 4455555555555555555555555554433 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 715 NTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 715 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
+..+|..++.+|.+.|++++|.++|+++.+
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 445555555555555555555555555554
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.6e-38 Score=355.09 Aligned_cols=454 Identities=10% Similarity=0.029 Sum_probs=384.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003749 306 YARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAA 385 (798)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A 385 (798)
+...|....+...+..+.. ++...|+.++..|.+.|++++|+.+|++|.+. .|+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSL----SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccchH----HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 3445666666666665543 47889999999999999999999999999864 46889999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---------------CCCCChhhHHHHHHHHHhcC
Q 003749 386 DHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE---------------GIDAPIDIYHMMMDGYTIIG 450 (798)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---------------~~~~~~~~~~~l~~~~~~~g 450 (798)
+.+|+++... ..+..+++.++.+|.+.|++++|.++|+++... +...+..+|+.++.+|.+.|
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 214 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS 214 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC
Confidence 9999998654 558899999999999999999999999853221 12235789999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHH--------------------------------------HHHHHHcCCHHHHHH
Q 003749 451 NEEKCLIVFERLKECGFSPSIISYGCL--------------------------------------INLYTKIGKVSKALE 492 (798)
Q Consensus 451 ~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------------------------------i~~~~~~g~~~~A~~ 492 (798)
++++|+++|+++.+.+.. +...+..+ +..|.+.|++++|++
T Consensus 215 ~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 215 NFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 999999999999886532 33333333 556667899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 003749 493 VSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERH 572 (798)
Q Consensus 493 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 572 (798)
+|+++.+. ..+..+|+.++.+|.+.|++++|+.+|+++.+.+.. +..+++.++.+|.+.|++++|..+++++.....
T Consensus 294 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 370 (597)
T 2xpi_A 294 YLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHP 370 (597)
T ss_dssp HHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc
Confidence 99999875 478999999999999999999999999999987655 778899999999999999999999999987653
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003749 573 RPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTI 652 (798)
Q Consensus 573 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~l 652 (798)
.+..++..++.+|.+.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|+++|+++.+.+ ..+..+|..+
T Consensus 371 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 447 (597)
T 2xpi_A 371 -EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFL 447 (597)
T ss_dssp -TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHH
T ss_pred -ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHH
Confidence 37788999999999999999999999999886543 78899999999999999999999999999875 4578899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHH
Q 003749 653 MHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ----KIPRN--TFVYNILIDGW 726 (798)
Q Consensus 653 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~ 726 (798)
+.+|.+.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 99999999999999999999987654 8899999999999999999999999999875 44566 78999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCcccccccccc
Q 003749 727 ARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSIPML 776 (798)
Q Consensus 727 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~~~~ 776 (798)
.+.|++++|+++++++.+.+ ..+..+|..++..|.+.|++++|.+....
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999864 34789999999999999999999988443
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=8.7e-28 Score=256.35 Aligned_cols=380 Identities=12% Similarity=0.042 Sum_probs=173.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (798)
...+.+.|++++|++.++.+.+.. +.+...+..+...+.+.|++++|...++..++.. +.+..+|..++..|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 444555566666666666555542 2233444455555555566666666655555542 23455555555556666666
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL 462 (798)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (798)
++|++.|+++..... .+..+|..++.++.+.|++++|.+.|+++.+.+ +.+..++..+...|...|++++|++.|+++
T Consensus 84 ~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666655555422 134445555555555555555555555555442 222333444444444444444444444444
Q ss_pred HHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003749 463 KECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVV 542 (798)
Q Consensus 463 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 542 (798)
.+.... +..+|..+..+|...|++++|+..|+++. +.++. +..
T Consensus 162 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----------------------------------~~~p~-~~~ 204 (388)
T 1w3b_A 162 IETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAV-----------------------------------TLDPN-FLD 204 (388)
T ss_dssp HHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH-----------------------------------HHCTT-CHH
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------------------hcCCC-cHH
Confidence 443211 23344444444444444444444444444 33222 233
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 543 LYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622 (798)
Q Consensus 543 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 622 (798)
.|..+...+...|++++|+..|++....... +..++..+..+|.+.|++++|+..|+++.+.... +..+|..+..++.
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 3444444444444444444444444333211 2333344444444444444444444444443221 2334444444444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003749 623 EKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALA 702 (798)
Q Consensus 623 ~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 702 (798)
+.|++++|+..|+++.+.. +.+..+|..+...+.+.|++++|.++|+++.+... .+..++..++.+|.+.|++++|..
T Consensus 283 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444444444444332 23334444444444444444444444444443321 133444444444444444444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003749 703 VTKEMSAQKIPRNTFVYNILIDGWAR 728 (798)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~l~~~~~~ 728 (798)
.++++.+.. +.+...|..+...+..
T Consensus 361 ~~~~a~~~~-p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 361 HYKEAIRIS-PTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhC-CCCHHHHHhHHHHHHH
Confidence 444444432 2333344444444433
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.2e-27 Score=255.34 Aligned_cols=371 Identities=11% Similarity=0.023 Sum_probs=265.4
Q ss_pred cHHHHHHHHHhh---cCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 003749 280 NWQAVVSAFERI---KKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRK 356 (798)
Q Consensus 280 ~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 356 (798)
.+...+..|... ...+...+..+...+.+.|++++|..+++.+.+.. +.+..+|+.+..+|.+.|++++|+..|++
T Consensus 14 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 92 (388)
T 1w3b_A 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRH 92 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455666666543 23356677888889999999999999999999874 56788999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 003749 357 MKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPI 436 (798)
Q Consensus 357 m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 436 (798)
+++.. +.+..+|..++.+|.+.|++++|++.|+++.+.+.. +...+..+..+|...|++++|.++|+++.+.. +.+.
T Consensus 93 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 169 (388)
T 1w3b_A 93 ALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFA 169 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCH
Confidence 99864 336778999999999999999999999999987533 56778889999999999999999999999874 4567
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003749 437 DIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGF 516 (798)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 516 (798)
.+|+.+...|...|++++|+..|+++.+.+.. +...|..+...+...|++++|+..|+++.+.. +.+..++..+...|
T Consensus 170 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 247 (388)
T 1w3b_A 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVY 247 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHH
Confidence 89999999999999999999999999986533 56778888888888888888888888777653 23456666666677
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 003749 517 LKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRAL 596 (798)
Q Consensus 517 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 596 (798)
.+.|++++|+..|+++.+.... +..+|..+..++.+.|++++|+..|+++.+..
T Consensus 248 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------------- 301 (388)
T 1w3b_A 248 YEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC------------------------- 301 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-------------------------
T ss_pred HHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------------------
Confidence 7777777777777666665333 34455555555555555555555555544432
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 597 EIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG 676 (798)
Q Consensus 597 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~ 676 (798)
. .+..+++.+...+.+.|++++|+..++++.+.. +.+..++..++.+|.+.|++++|++.|+++++..
T Consensus 302 ----------p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 302 ----------P-THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp ----------T-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred ----------c-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2 244455555555555555555555555554432 2334455555555555555555555555555543
Q ss_pred CCCCHHHHHHHHHHHHHcC
Q 003749 677 LELDVFTYEALLKACCKSG 695 (798)
Q Consensus 677 ~~~~~~~~~~l~~~~~~~g 695 (798)
.. +...|..+...+.+.|
T Consensus 370 p~-~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 370 PT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TT-CHHHHHHHHHHHHHTC
T ss_pred CC-CHHHHHhHHHHHHHcc
Confidence 22 3445555554444433
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.5e-28 Score=266.12 Aligned_cols=216 Identities=15% Similarity=0.209 Sum_probs=176.7
Q ss_pred HHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 003749 560 AIHIVKEMQKERHRPT-SRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQ---------MEK 629 (798)
Q Consensus 560 A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~---------~~~ 629 (798)
+..+.+++.+.+.... ...++.+|++|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 3444555555544322 335677788888888888888888888888888888888888888876554 688
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003749 630 AIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA 709 (798)
Q Consensus 630 A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (798)
|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCccccccccc
Q 003749 710 QKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSIPM 775 (798)
Q Consensus 710 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~~~ 775 (798)
.|+.||..+|++||.+|++.|+.++|.++|++|++.|..|+..||+.|+..++..+..+.+.+...
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a~~~g~~~~d 234 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWD 234 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHHHTCCBSCCC
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999887765555554433
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.9e-27 Score=257.37 Aligned_cols=205 Identities=14% Similarity=0.179 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------HH
Q 003749 314 RARQTFENMRARGIEPTL-HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN---------AE 383 (798)
Q Consensus 314 ~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~---------~~ 383 (798)
.+..+.+++.+++..... ..++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344555666666655443 35788888888888888888888888888888888888888888887654 45
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 384 AADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (798)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (798)
+|.++|++|...|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+.++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003749 464 ECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK 518 (798)
Q Consensus 464 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 518 (798)
+.|+.||..+|+.||.+|++.|+.++|.++|++|++.+..|+..||+.|+..|+.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666666666666654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.4e-24 Score=239.16 Aligned_cols=440 Identities=10% Similarity=-0.068 Sum_probs=296.6
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...+..+...|.+.|++++|+..|+++.+.+ |+..+|..+..+|.+.|++++|+..|+++++.+ +.+..+|..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3456778889999999999999999999984 789999999999999999999999999999875 3478899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (798)
|.+.|++++|+..|+++...+.. +......++..+........+.+.+..+...+..++...+................
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 99999999999999999987643 44444445554444444444444333322221111111000000000000000001
Q ss_pred HHHHHHHHHCCC---------CcCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHHH
Q 003749 456 LIVFERLKECGF---------SPSIISYGCLINLYTK---IGKVSKALEVSKVMKS-----SGI--------KHNMKTYS 510 (798)
Q Consensus 456 ~~~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~--------~~~~~~~~ 510 (798)
..+...+..... ..+...+..+...+.. .|++++|+.+|+++.+ ... ..+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 111111111100 1113344444444443 6778888888877776 211 11245666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 003749 511 MLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAG 590 (798)
Q Consensus 511 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 590 (798)
.+...|...|++++|..+|+++.+.... ...+..+..+|...|++++|+..|+++...... +...+..+...|...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhC
Confidence 6777778888888888888887776544 667777788888888888888888887776533 5567777777888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003749 591 EMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFT 670 (798)
Q Consensus 591 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 670 (798)
++++|+..|+++.+.... +...+..+...|...|++++|+.+++++.+.. +.+...|..+...|...|++++|...|+
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888888776443 56677777778888888888888888877653 3345677778888888888888888888
Q ss_pred HHHHcCCC-CC----HHHHHHHHHHHHH---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 671 KLRNEGLE-LD----VFTYEALLKACCK---SGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (798)
Q Consensus 671 ~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (798)
++.+.... ++ ...+..+..+|.. .|++++|...++++.+.. +.+...+..++.+|.+.|++++|.+.|+++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 87765322 11 3377778888888 888888888888887654 456777888888888888888888888888
Q ss_pred HHc
Q 003749 743 KQE 745 (798)
Q Consensus 743 ~~~ 745 (798)
.+.
T Consensus 476 ~~~ 478 (514)
T 2gw1_A 476 ADL 478 (514)
T ss_dssp HHH
T ss_pred HHh
Confidence 774
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.8e-23 Score=230.49 Aligned_cols=443 Identities=10% Similarity=-0.031 Sum_probs=320.3
Q ss_pred hhccCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003749 245 RWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRA 324 (798)
Q Consensus 245 ~~~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 324 (798)
..+|.+.|+. ++|+..|++++..+| +...|..+..+|.+.|++++|+..|+++.+
T Consensus 13 g~~~~~~g~~---------~~A~~~~~~al~~~p----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 67 (514)
T 2gw1_A 13 GNQFFRNKKY---------DDAIKYYNWALELKE----------------DPVFYSNLSACYVSVGDLKKVVEMSTKALE 67 (514)
T ss_dssp HHHHHHTSCH---------HHHHHHHHHHHHHCC----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccH---------HHHHHHHHHHHhcCc----------------cHHHHHhHHHHHHHHhhHHHHHHHHHHHhc
Confidence 3346666776 999999999998876 567788999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhH
Q 003749 325 RGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIY 404 (798)
Q Consensus 325 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 404 (798)
.+ +.+..+|..+..+|.+.|++++|+..|+++.+.+. .+......++..+.+......+.+.+..+...+..++...+
T Consensus 68 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 145 (514)
T 2gw1_A 68 LK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELST 145 (514)
T ss_dssp HC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC----------------
T ss_pred cC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence 75 45678999999999999999999999999998753 34455555555555444444444433332222111111111
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC
Q 003749 405 GNIIYAQCQTRNMERAEALVRDMEEEGI---------DAPIDIYHMMMDGYTI---IGNEEKCLIVFERLKE-----CGF 467 (798)
Q Consensus 405 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~~~ 467 (798)
..................+...+..... +.+...+..+...+.. .|++++|+.+|+++.+ ..-
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 225 (514)
T 2gw1_A 146 QPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK 225 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 1100001111111111111111111110 1124455555555554 8889999999998887 311
Q ss_pred --------CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003749 468 --------SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKP 539 (798)
Q Consensus 468 --------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 539 (798)
..+..++..+..++...|++++|+.+|+++.+.... ...+..+...|...|++++|...|+++.+....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 302 (514)
T 2gw1_A 226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN- 302 (514)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-
T ss_pred CccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-
Confidence 123567788889999999999999999999886533 778888899999999999999999999887544
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 540 DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALIL 619 (798)
Q Consensus 540 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 619 (798)
+...+..+...|...|++++|+..|+++...... +...+..+...|.+.|++++|+.+|+++.+.... +...+..+..
T Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 380 (514)
T 2gw1_A 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAE 380 (514)
T ss_dssp CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHH
Confidence 6678888999999999999999999999887644 6678888888999999999999999999876443 5678888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 620 GLVEKRQMEKAIEILDEMTLAGIS-PN----EHTYTTIMHGYAS---LGDTGKAFEYFTKLRNEGLELDVFTYEALLKAC 691 (798)
Q Consensus 620 ~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~t~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 691 (798)
.|...|++++|+..++++.+.... ++ ...|..+..++.. .|++++|...|+++.+.... +..++..+..+|
T Consensus 381 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 459 (514)
T 2gw1_A 381 ILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMK 459 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 999999999999999988764211 11 3488899999999 99999999999999987643 678889999999
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003749 692 CKSGRMQSALAVTKEMSAQKIPRNTFVYNI 721 (798)
Q Consensus 692 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 721 (798)
.+.|++++|...++++.+.. +.+...+..
T Consensus 460 ~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~ 488 (514)
T 2gw1_A 460 LQQEDIDEAITLFEESADLA-RTMEEKLQA 488 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-SSHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhc-cccHHHHHH
Confidence 99999999999999999865 333444443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=9.4e-23 Score=222.10 Aligned_cols=392 Identities=11% Similarity=0.035 Sum_probs=243.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 003749 347 MEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRD 426 (798)
Q Consensus 347 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 426 (798)
...+...+.++.... +.+...+..++..|.+.|++++|+.+|+++.+... .+..++..++.+|...|++++|.+.|++
T Consensus 8 ~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 8 SSGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344555566665543 34678888999999999999999999999887643 3788888889999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003749 427 MEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSI---ISYGCLINLYTKIGKVSKALEVSKVMKSSGIK 503 (798)
Q Consensus 427 m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 503 (798)
+++.+ +.+..++..++.+|...|++++|+.+|+++.+.... +. ..+..++..+...
T Consensus 86 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~------------------- 144 (450)
T 2y4t_A 86 VIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQ------------------- 144 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHH-------------------
Confidence 88875 446778888888888999999999999888875322 33 5566554441110
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHH
Q 003749 504 HNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPII 583 (798)
Q Consensus 504 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 583 (798)
.+..+...|...|++++|+.+|+++.+.... +..++..++.+|.+.|++++|+.+|+++...... +..++..++
T Consensus 145 ----~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 218 (450)
T 2y4t_A 145 ----RLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKIS 218 (450)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 1111222344445555555555555443322 4444555555555555555555555555443221 344455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----H
Q 003749 584 HGFARAGEMKRALEIFDMMRRSGCIPTVHTFNAL------------ILGLVEKRQMEKAIEILDEMTLAGISPN-----E 646 (798)
Q Consensus 584 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l------------i~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~ 646 (798)
.+|.+.|++++|+..|+++.+.... +...+..+ ...|.+.|++++|+.+|+++.+.. |+ .
T Consensus 219 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~ 295 (450)
T 2y4t_A 219 TLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTV 295 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHH
Confidence 5555555555555555555443221 23333222 667777788888888888777642 33 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDG- 725 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~- 725 (798)
..|..++.++.+.|++++|+.+++++++... .+..+|..++.+|...|++++|...++++.+.. +.+...+..+..+
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 373 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQ 373 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHH
Confidence 4677777788888888888888888776643 267777888888888888888888888887754 4456666666633
Q ss_pred -----------HHHcC-----CHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHHcCCccccccc
Q 003749 726 -----------WARRG-----DVWEAADLMQQMKQEGVQPD-----------VHTYTSFINACSKAGDMQVRFSI 773 (798)
Q Consensus 726 -----------~~~~g-----~~~~A~~~~~~m~~~g~~pd-----------~~~~~~l~~~~~~~g~~~~a~~~ 773 (798)
|...| +.+++.+.++++... ..|| ...|..+..+|...||.++....
T Consensus 374 ~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~-~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~y 447 (450)
T 2y4t_A 374 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ-WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKF 447 (450)
T ss_dssp HHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH-SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC---
T ss_pred HHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH-hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhc
Confidence 33334 566778888764321 2332 23788899999999998877654
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=5.6e-23 Score=229.47 Aligned_cols=434 Identities=10% Similarity=0.024 Sum_probs=319.8
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..+|.+.|++++|++.|+++++.+ +.+..++..++.+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567788899999999999999999999975 4578899999999999999999999999999875 3478899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGI--DAPIDIYHMMMDGYTIIGNEE 453 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~ 453 (798)
|.+.|++++|+..|+ ...... ......+..+...+...+|.+.++++..... ..........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNG----DFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhcCC----CCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999997 433322 1222234455666677889999988865410 111112233444555666666
Q ss_pred HHHHHHHHHHHCCCCcCHH-HHHHHHHHH--------HHcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHH
Q 003749 454 KCLIVFERLKECGFSPSII-SYGCLINLY--------TKIGKVSKALEVSKVMKSSGIKHN-------MKTYSMLINGFL 517 (798)
Q Consensus 454 ~A~~~~~~~~~~~~~~~~~-~~~~li~~~--------~~~g~~~~A~~~~~~m~~~~~~~~-------~~~~~~ll~~~~ 517 (798)
.+...+.+.... .+... ....+...+ ...|++++|+.+++++.+... .+ ..++..+...+.
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHH
Confidence 655554433221 11111 222222222 223578888889888887532 22 224666667788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 003749 518 KLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALE 597 (798)
Q Consensus 518 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 597 (798)
..|++++|...|+++.+... +...+..+...|...|++++|+..|+++...... +..++..+...+.+.|++++|+.
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence 88999999999999888643 4778888888899999999999999998877543 56778888888999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003749 598 IFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGL 677 (798)
Q Consensus 598 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 677 (798)
.|+++.+.... +...+..+..+|...|++++|+.+|+++.+.. +.+...|..+...+...|++++|.+.|+++.+...
T Consensus 332 ~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 99998876543 56788888889999999999999999988764 44567888888999999999999999998876421
Q ss_pred -----CCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 678 -----ELDVFTYEALLKACCKS----------GRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (798)
Q Consensus 678 -----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (798)
......+..+..+|... |++++|..+++++.+.. +.+...|..++.+|.+.|++++|++.|+++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 12223345556677777 99999999999988765 567788999999999999999999999998
Q ss_pred HHc
Q 003749 743 KQE 745 (798)
Q Consensus 743 ~~~ 745 (798)
.+.
T Consensus 489 l~~ 491 (537)
T 3fp2_A 489 AIL 491 (537)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.7e-22 Score=220.03 Aligned_cols=303 Identities=10% Similarity=0.083 Sum_probs=217.5
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
+...+..++..|.+.|++++|+.+|+++.+.. +.+..+|..+..+|...|++++|+..|+++++.+ +.+..++..++.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 56778889999999999999999999999874 4578899999999999999999999999999875 336889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCh---hhHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNA---IIYGNI------------IYAQCQTRNMERAEALVRDMEEEGIDAPIDIY 439 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 439 (798)
+|.+.|++++|+..|+++.+.+.. +. .++..+ ...+.+.|++++|.++|+++.+.. +.+..++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 999999999999999999886432 33 555555 344777888888888888877764 4466777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------
Q 003749 440 HMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSML------- 512 (798)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l------- 512 (798)
..++.+|...|++++|+.+|+++.+... .+..+|..++.+|...|++++|+..|+++.+.. +.+...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence 7778888888888888888887776532 256777777888888888888888888777643 2233444333
Q ss_pred -----HHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHH
Q 003749 513 -----INGFLKLKDWANVFAVFEDVMRDGLKPD----VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPII 583 (798)
Q Consensus 513 -----l~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 583 (798)
...|.+.|++++|+.+|+++.+.... + ...+..+..++.+.|++++|+..++++...... +...|..+.
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~ 336 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 55566666666666666666554322 2 234555566666666666666666665554321 445555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 003749 584 HGFARAGEMKRALEIFDMMRRS 605 (798)
Q Consensus 584 ~~~~~~~~~~~a~~~~~~~~~~ 605 (798)
.+|.+.|++++|...|+++.+.
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHh
Confidence 6666666666666666666553
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=4.3e-22 Score=222.26 Aligned_cols=430 Identities=8% Similarity=-0.010 Sum_probs=325.7
Q ss_pred hhhhccCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHH
Q 003749 243 RARWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENM 322 (798)
Q Consensus 243 ~~~~~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 322 (798)
....+|.+.|+. +.|...|++++..+|. +...|..+..+|.+.|++++|++.|+++
T Consensus 30 ~~g~~~~~~g~~---------~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~a 85 (537)
T 3fp2_A 30 NRGNHFFTAKNF---------NEAIKYYQYAIELDPN---------------EPVFYSNISACYISTGDLEKVIEFTTKA 85 (537)
T ss_dssp HHHHHHHHTTCC---------C-CHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccH---------HHHHHHHHHHHhhCCC---------------CcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333447777777 9999999999999987 6788899999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCC
Q 003749 323 RARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHA--TLN 400 (798)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~ 400 (798)
.+.+ +.+..++..+..+|...|++++|+..|+ .... .++ .....+..+...+...+|+..++++..... ...
T Consensus 86 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 159 (537)
T 3fp2_A 86 LEIK-PDHSKALLRRASANESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQ 159 (537)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------C
T ss_pred HhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 9975 5578899999999999999999999996 4332 222 223345566667777899999999866421 111
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHH--------hcCCHHHHHHHHHHHHHCCCCcC-
Q 003749 401 AIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAP-IDIYHMMMDGYT--------IIGNEEKCLIVFERLKECGFSPS- 470 (798)
Q Consensus 401 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~--------~~g~~~~A~~~~~~~~~~~~~~~- 470 (798)
.......+..+....+.+.+...+...... .+. ......+...+. ..|++++|+.+|+++.+.... +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~ 236 (537)
T 3fp2_A 160 VLPSNTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DD 236 (537)
T ss_dssp CCCCHHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CH
T ss_pred ccchHhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cc
Confidence 112233344555566666555444333221 111 112333333322 235789999999999875432 2
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003749 471 ------IISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLY 544 (798)
Q Consensus 471 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 544 (798)
..++..+...+...|++++|+..|+++.+.. |+...+..+...|...|++++|+..|+++.+.... +..++
T Consensus 237 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 313 (537)
T 3fp2_A 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTY 313 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHH
Confidence 2356777788999999999999999999864 55788888999999999999999999999887654 78889
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003749 545 NNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEK 624 (798)
Q Consensus 545 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 624 (798)
..+...+...|++++|+..|+++...... +...+..+..+|.+.|++++|+.+|+++.+.... +...+..+...+...
T Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 391 (537)
T 3fp2_A 314 YHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDR 391 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHh
Confidence 99999999999999999999999887644 5678888999999999999999999999987543 677888999999999
Q ss_pred CCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 625 RQMEKAIEILDEMTLAG-----ISPNEHTYTTIMHGYASL----------GDTGKAFEYFTKLRNEGLELDVFTYEALLK 689 (798)
Q Consensus 625 ~~~~~A~~~~~~m~~~~-----~~p~~~t~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 689 (798)
|++++|+..|+++.+.. .......+..+..++... |++++|...|+++.+.... +..++..+..
T Consensus 392 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 470 (537)
T 3fp2_A 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQ 470 (537)
T ss_dssp TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 99999999999987542 112233455566777777 9999999999999987643 7789999999
Q ss_pred HHHHcCChHHHHHHHHHHHhCC
Q 003749 690 ACCKSGRMQSALAVTKEMSAQK 711 (798)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~~ 711 (798)
+|.+.|++++|...|+++.+..
T Consensus 471 ~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 471 LKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhccHHHHHHHHHHHHHhC
Confidence 9999999999999999999865
No 13
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=4.6e-18 Score=186.70 Aligned_cols=364 Identities=13% Similarity=0.099 Sum_probs=282.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 003749 315 ARQTFENMRARGIEPTLHVYTNLIHAYAV----GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----MGNAEAAD 386 (798)
Q Consensus 315 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~ 386 (798)
++..+....+.| +...+..+...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|+
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 455666666654 67777778888877 788888888888888764 67788888888888 88888888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHH
Q 003749 387 HWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI----IGNEEKCLIV 458 (798)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 458 (798)
++|++..+.+ +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|+++
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 8888887764 66777778888877 778888888888888765 56777788888876 7788888888
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 003749 459 FERLKECGFSPSIISYGCLINLYTK----IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK----LKDWANVFAVFE 530 (798)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~ 530 (798)
|++..+.| +...+..|..+|.. .++.++|++.|++..+.+ +...+..+...|.. .+++++|..+|+
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 88888764 67778888888887 788888888888888764 56677777777775 788888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc-----CCHHHHHHHHHH
Q 003749 531 DVMRDGLKPDVVLYNNIIRAFCG----MGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARA-----GEMKRALEIFDM 601 (798)
Q Consensus 531 ~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~ 601 (798)
+..+.| +...+..|..+|.. .++.++|+.+|++..+.+ +...+..+...|... +++++|+..|++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 887753 45667777777777 788888888888887664 445666677777776 788888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHH
Q 003749 602 MRRSGCIPTVHTFNALILGLVEKR---QMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS----LGDTGKAFEYFTKLRN 674 (798)
Q Consensus 602 ~~~~~~~p~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~~~~ 674 (798)
..+.+ +...+..|...|...| ++++|++.|++..+.+ +...+..|...|.. .+++++|+++|++..+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 88764 4566677777776655 7788888888888753 56778888888887 7888888888888888
Q ss_pred cCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCC
Q 003749 675 EGLELDVFTYEALLKACCK----SGRMQSALAVTKEMSAQK 711 (798)
Q Consensus 675 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 711 (798)
.+ +...+..|..+|.+ .+++++|...|++..+.+
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 65 56777888888887 788888888888888765
No 14
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=6.6e-18 Score=185.46 Aligned_cols=353 Identities=14% Similarity=0.089 Sum_probs=310.4
Q ss_pred CHhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCH
Q 003749 295 SRREFGLMVNYYAR----RGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV----GRDMEEALSCVRKMKEEGIEMSL 366 (798)
Q Consensus 295 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~ 366 (798)
+...+..|...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|+.+|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 56677778888888 899999999999999875 77889999999998 899999999999999875 77
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhh
Q 003749 367 VTYSIIVGGFAK----MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERAEALVRDMEEEGIDAPIDI 438 (798)
Q Consensus 367 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~ 438 (798)
..+..|...|.. .+++++|+.+|++..+.+ +...+..|..+|.. .+++++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 888899999998 899999999999998875 67888889999987 889999999999999875 6788
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003749 439 YHMMMDGYTI----IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTK----IGKVSKALEVSKVMKSSGIKHNMKTYS 510 (798)
Q Consensus 439 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 510 (798)
+..|...|.. .++.++|+.+|++..+.| +...+..|..+|.. .+++++|+.+|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 9999999998 899999999999999875 67788889888887 899999999999998864 567777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-----CChHHHHHHHHHHHHCCCCCCcccHHH
Q 003749 511 MLINGFLK----LKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGM-----GNMDRAIHIVKEMQKERHRPTSRTFMP 581 (798)
Q Consensus 511 ~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~ 581 (798)
.+...|.. .+++++|+..|++..+.| +...+..|..+|... ++.++|+.+|++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 78888887 899999999999998763 567788888999887 89999999999999875 4567777
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003749 582 IIHGFARAG---EMKRALEIFDMMRRSGCIPTVHTFNALILGLVE----KRQMEKAIEILDEMTLAGISPNEHTYTTIMH 654 (798)
Q Consensus 582 li~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 654 (798)
+...|.+.| ++++|++.|++..+.+ +...+..|...|.. .+++++|+..|++..+.+ +...+..|..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888887766 7899999999999863 67888889888988 899999999999999865 5788889999
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCC
Q 003749 655 GYAS----LGDTGKAFEYFTKLRNEGL 677 (798)
Q Consensus 655 ~~~~----~g~~~~A~~~~~~~~~~~~ 677 (798)
.|.+ .++.++|...|++..+.+.
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9988 8999999999999998874
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=5.2e-19 Score=185.85 Aligned_cols=332 Identities=10% Similarity=0.051 Sum_probs=203.2
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...+..+...+...|++++|+..|+++.+.. +.+..++..+...|...|++++|+..|+++++.. +-+..+|..++.+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4567778888899999999999999998874 4467788888999999999999999999988864 3367888899999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC--CChhhHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHAT--LNAIIYGNI------------IYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHM 441 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 441 (798)
|.+.|++++|+..|+++.+.... .+...+..+ ...+...|++++|.++++++.+.. +.+..++..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 99999999999999998876431 133444444 344455555555555555555442 233444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003749 442 MMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKD 521 (798)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 521 (798)
+..+|...|++++|+..++++.+... .+..++..+..+|...|++++|...|+++.+.. +.+...+..+..
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------- 230 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ------- 230 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH-------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHH-------
Confidence 55555555555555555555544321 134445555555555555555555555544432 111111111100
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcCCHHHHHH
Q 003749 522 WANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS----RTFMPIIHGFARAGEMKRALE 597 (798)
Q Consensus 522 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~ 597 (798)
+. .......+...+.+.|++++|...|+++...... +. ..+..+..++.+.|++++|+.
T Consensus 231 ----------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 231 ----------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp ----------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 00 0001112355566777777777777776665422 22 223345666777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003749 598 IFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS 658 (798)
Q Consensus 598 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 658 (798)
.++++.+.... +...+..+..+|...|++++|...|+++.+.. +-+...+..+..+...
T Consensus 294 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 294 ICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 77777765332 56677777777777777777777777777653 2334555555555443
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=8e-19 Score=184.39 Aligned_cols=343 Identities=11% Similarity=0.022 Sum_probs=191.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 003749 365 SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMD 444 (798)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 444 (798)
|...+..++..+.+.|++++|+..|+++.+.... +..++..+..+|...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 4566777778888888888888888888776433 56777777777788888888888887777764 335567777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003749 445 GYTIIGNEEKCLIVFERLKECGFS--PSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDW 522 (798)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 522 (798)
+|...|++++|+..|+++.+.... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777777764320 12223332221110 01122234455666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 523 ANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMM 602 (798)
Q Consensus 523 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 602 (798)
++|+.+|+++.+.... +...+..+...+...|++++|+..++++...... +...+..+...+.+.|++++|...|+++
T Consensus 137 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666666655433 4556666666666666666666666666655322 4455556666666666666666666666
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-
Q 003749 603 RRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDV- 681 (798)
Q Consensus 603 ~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 681 (798)
.+.... +...+..+.. +. .......+...+.+.|++++|...++++.+.... +.
T Consensus 215 ~~~~~~-~~~~~~~~~~-----------------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 269 (359)
T 3ieg_A 215 LKLDQD-HKRCFAHYKQ-----------------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAE 269 (359)
T ss_dssp HHHCTT-CHHHHHHHHH-----------------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHH
T ss_pred HhhCcc-chHHHHHHHH-----------------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chH
Confidence 554322 2222211100 00 0011112234455555555555555555554322 22
Q ss_pred ---HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 003749 682 ---FTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD-VHTYTSF 757 (798)
Q Consensus 682 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~l 757 (798)
..+..+..+|.+.|++++|..+++++.+.. +.+...|..++.+|.+.|++++|++.|+++.+. .|+ ...+..|
T Consensus 270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l 346 (359)
T 3ieg_A 270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGL 346 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHH
Confidence 123344555555666666666666555543 335555556666666666666666666665543 232 3344444
Q ss_pred HHHHH
Q 003749 758 INACS 762 (798)
Q Consensus 758 ~~~~~ 762 (798)
..+..
T Consensus 347 ~~~~~ 351 (359)
T 3ieg_A 347 EKAQR 351 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=2.3e-17 Score=183.05 Aligned_cols=421 Identities=10% Similarity=0.055 Sum_probs=259.7
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
+...|..++. +.+.|++++|+.+|+++.+.. +.+...|..++..+.+.|++++|..+|+++++. .|+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 4556666666 356667777777777776652 445556666777776677777777777776664 245556665554
Q ss_pred HH-HhcCCHHHHHH----HHHHHHhc-CCC-CChhhHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCChhh
Q 003749 375 GF-AKMGNAEAADH----WFEEAKER-HAT-LNAIIYGNIIYAQCQ---------TRNMERAEALVRDMEEEGIDAPIDI 438 (798)
Q Consensus 375 ~~-~~~g~~~~A~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~m~~~~~~~~~~~ 438 (798)
.. ...|++++|++ +|+++... |.. .+...|...+....+ .|++++|..+|++.++.........
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 22 33455555443 55555432 221 234455555544433 4556666666666655210000112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HCC---CCCC----
Q 003749 439 YHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMK------SSG---IKHN---- 505 (798)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~---~~~~---- 505 (798)
|..........|. .+...++. ...++++.|..+++.+. +.. +.|+
T Consensus 168 ~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 168 WRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 2211111100110 00011110 12344566666665522 111 2333
Q ss_pred ----HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-------CCChH-------H
Q 003749 506 ----MKTYSMLINGFLKL----KDW----ANVFAVFEDVMRDGLKPDVVLYNNIIRAFCG-------MGNMD-------R 559 (798)
Q Consensus 506 ----~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~ 559 (798)
...|...+...... ++. +.+..+|++.+...+. +...|..++..+.+ .|+++ +
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 304 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence 23555544333222 222 4677788888776443 67788888887775 78876 8
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 560 AIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPT-VHTFNALILGLVEKRQMEKAIEILDEMT 638 (798)
Q Consensus 560 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~ 638 (798)
|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+++++.... + ...|..++..+.+.|++++|.++|++..
T Consensus 305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8999998886322235677888888888999999999999999885332 3 3578888888888899999999999988
Q ss_pred HCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCC--
Q 003749 639 LAGISPNEHTYTTIMHG-YASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK-IPR-- 714 (798)
Q Consensus 639 ~~~~~p~~~t~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~-- 714 (798)
+.. ..+...|...+.. +...|+.++|..+|+++++.... +...|..++..+.+.|+.++|..+|+++...+ ..+
T Consensus 384 ~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 384 EDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp TCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred hcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 753 2233333332222 34588999999999998876533 67888888988889999999999999998763 122
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003749 715 NTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (798)
Q Consensus 715 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (798)
....|...+......|+.+.+..+++++.+.
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2447888888888889999999999888764
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=3e-17 Score=182.10 Aligned_cols=402 Identities=11% Similarity=0.081 Sum_probs=270.8
Q ss_pred cHHHHHHHHHhhc---CCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCChHHHHH---
Q 003749 280 NWQAVVSAFERIK---KPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAY-AVGRDMEEALS--- 352 (798)
Q Consensus 280 ~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~g~~~~A~~--- 352 (798)
....+...|++.- .-+...|..++..+.+.|++++|+.+|+++++. .|+...|...+... ...|++++|.+
T Consensus 27 ~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~ 104 (530)
T 2ooe_A 27 PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMA 104 (530)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHH
Confidence 3455555566543 235667999999999999999999999999987 46888888888644 45688877765
Q ss_pred -HHHHHHHc-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChHH
Q 003749 353 -CVRKMKEE-GIEM-SLVTYSIIVGGFAK---------MGNAEAADHWFEEAKERHATLN-AIIYGNIIYAQCQTRNMER 419 (798)
Q Consensus 353 -~~~~m~~~-g~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 419 (798)
+|++.++. |..+ +...|...+....+ .|++++|+.+|++++.. ...+ ...|..........+. ..
T Consensus 105 ~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~~~~~~~e~~~~~-~~ 182 (530)
T 2ooe_A 105 QAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQLWRDYNKYEEGINI-HL 182 (530)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHHHHHHHHHHHHHCH-HH
T ss_pred HHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHHHHHHHHHHHhhch-hH
Confidence 77777653 4433 56788888887665 78999999999999873 1111 1233222211111110 00
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH------HCC---CCcC--------HHHHHHHHHHHH
Q 003749 420 AEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK------ECG---FSPS--------IISYGCLINLYT 482 (798)
Q Consensus 420 A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~---~~~~--------~~~~~~li~~~~ 482 (798)
+. .++. ...+++..|..++.++. +.. +.|+ ...|...+....
T Consensus 183 ~~-------------------~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 183 AK-------------------KMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp HH-------------------HHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred HH-------------------HHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 11 1110 12334555555555422 111 1222 245555554433
Q ss_pred Hc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCC
Q 003749 483 KI----GKV----SKALEVSKVMKSSGIKHNMKTYSMLINGFLK-------LKDWA-------NVFAVFEDVMRDGLKPD 540 (798)
Q Consensus 483 ~~----g~~----~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~g~~~~ 540 (798)
.. ++. ++++.+|+++.... +.+...|..++..+.+ .|+++ +|..+|++.++.-..-+
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~ 320 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 320 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc
Confidence 32 222 46777888887753 3467778877777765 68876 88889988876212236
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 541 VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPT-SRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALIL 619 (798)
Q Consensus 541 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 619 (798)
...|..++..+.+.|++++|..+|+++...... + ...|..++..+.+.|++++|..+|++..+.... +...|...+.
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~ 398 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHH
Confidence 778888888899999999999999998886432 2 247888888888889999999999998875322 2333332222
Q ss_pred H-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHHHcC
Q 003749 620 G-LVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGL-EL--DVFTYEALLKACCKSG 695 (798)
Q Consensus 620 ~-~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g 695 (798)
. +...|+.++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|++++..+. .| ....|...+......|
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2 346899999999999887763 34678888999999999999999999999988743 22 2557888888888899
Q ss_pred ChHHHHHHHHHHHhC
Q 003749 696 RMQSALAVTKEMSAQ 710 (798)
Q Consensus 696 ~~~~A~~~~~~~~~~ 710 (798)
+.+.+..+.+++.+.
T Consensus 478 ~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 478 DLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999888763
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.4e-18 Score=178.45 Aligned_cols=283 Identities=10% Similarity=0.000 Sum_probs=121.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003749 437 DIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGF 516 (798)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 516 (798)
.++..++..+...|++++|+.+|+++.+.... +...+..++.++...|++++|+.+++++.+.. +.+...+..+...|
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 33344444444444444444444444433211 22333334444444444444444444444332 12233344444444
Q ss_pred HhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHH
Q 003749 517 LKLK-DWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRA 595 (798)
Q Consensus 517 ~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 595 (798)
...| ++++|...|+++.+.... +...|..+..++...|++++|+..|+++...... +...+..+...|...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHH
Confidence 4444 444444444444433222 2333444444444444444444444444433221 223333344444444444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCChHHHHH
Q 003749 596 LEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAG--------ISPNEHTYTTIMHGYASLGDTGKAFE 667 (798)
Q Consensus 596 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--------~~p~~~t~~~li~~~~~~g~~~~A~~ 667 (798)
+..++++.+.... +...+..+...+...|++++|+..++++.+.. ...+..+|..+..+|...|++++|+.
T Consensus 179 ~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4444444443221 34444444445555555555555554443320 01223344444555555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003749 668 YFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (798)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (798)
.|+++.+.... +...+..+..+|.+.|++++|...++++.+.. +.+...+..+..++
T Consensus 258 ~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 258 YHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 55555444322 33444444455555555555555555444433 23444444444444
No 20
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=1e-16 Score=182.60 Aligned_cols=410 Identities=11% Similarity=0.080 Sum_probs=312.9
Q ss_pred CCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003749 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGI--EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSI 371 (798)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 371 (798)
-++......++.|...|.+.+|+++|++..-.+- .-+....+.++....+. +..+..+..+++-+. ....
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHH
Confidence 4566678889999999999999999999994421 13456677777777766 556666666555422 2445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 003749 372 IVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (798)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 451 (798)
++..+...|.+++|..+|++... .......+ +-..+++++|.++.++. .+..+|..+..++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 88889999999999999999631 22222222 23788999999999866 247889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003749 452 EEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFED 531 (798)
Q Consensus 452 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 531 (798)
+++|+..|.+. -|...|..++.+|.+.|++++|.+.|...++.. ++....+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 99999999764 378889999999999999999999999988764 33333445889999999988644332
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003749 532 VMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTV 611 (798)
Q Consensus 532 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 611 (798)
+ .++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++.. +.
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~ 1250 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------ST 1250 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CH
Confidence 2 235667778999999999999999999985 378999999999999999999999873 67
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKAC 691 (798)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 691 (798)
.+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+... ..+...|+.|..+|
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLy 1324 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 1324 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHH
Confidence 89999999999999999998876542 3456778899999999999999999999888665 44666777777777
Q ss_pred HHcC--ChHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHHcCCHHHHHHH-------------HHHHHHcCCCCC
Q 003749 692 CKSG--RMQSALAVTKEMSAQKIPR------NTFVYNILIDGWARRGDVWEAADL-------------MQQMKQEGVQPD 750 (798)
Q Consensus 692 ~~~g--~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~-------------~~~m~~~g~~pd 750 (798)
++.. ++.++.++|..-.. +++ +...|.-++-.|.+.|+++.|... |++.+. -..|
T Consensus 1325 aKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n 1400 (1630)
T 1xi4_A 1325 SKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVAN 1400 (1630)
T ss_pred HhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--cccc
Confidence 7654 66677777764443 223 567899999999999999999843 222221 1235
Q ss_pred HHHHHHHHHHHHHcC
Q 003749 751 VHTYTSFINACSKAG 765 (798)
Q Consensus 751 ~~~~~~l~~~~~~~g 765 (798)
...|...+.-|....
T Consensus 1401 ~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1401 VELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHHHHhhC
Confidence 666666666555555
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=4.3e-18 Score=176.54 Aligned_cols=282 Identities=8% Similarity=-0.062 Sum_probs=124.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 003749 368 TYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYT 447 (798)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 447 (798)
.+..++..+...|++++|+++|+++.+.+.. +...+..++.++...|++++|..+++++.+.. +.+..+|..+...|.
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL 101 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 3334444444444444444444444433211 23333333444444444444444444444432 223334444444444
Q ss_pred hcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003749 448 IIG-NEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVF 526 (798)
Q Consensus 448 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 526 (798)
..| ++++|+..|++..+.... +...|..+..+|...|++++|+..++++.+.. +.+...+..+...|...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHH
Confidence 444 444444444444433211 23344444444444444444444444444432 112233333444444445555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC--------CCCcccHHHHHHHHHhcCCHHHHHHH
Q 003749 527 AVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERH--------RPTSRTFMPIIHGFARAGEMKRALEI 598 (798)
Q Consensus 527 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~a~~~ 598 (798)
..|+++.+.... +...+..+...+...|++++|...|+++..... ......+..+..+|.+.|++++|+..
T Consensus 180 ~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 555444443322 344444555555555555555555554443210 11233444555555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003749 599 FDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGY 656 (798)
Q Consensus 599 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 656 (798)
|+++.+.... +...+..+..+|.+.|++++|...|+++.+.. +.+...+..+..++
T Consensus 259 ~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 259 HRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 5555544322 34445555555555555555555555544432 22334444444444
No 22
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=7.6e-21 Score=155.34 Aligned_cols=86 Identities=20% Similarity=0.429 Sum_probs=79.6
Q ss_pred hhhcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecce
Q 003749 145 ETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (798)
Q Consensus 145 ~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~ 224 (798)
+....++++|||||||+++|+++|+++|++||.|.+|++++| +.+|+++|||||+|.+.++|.+|++.| ||..++||
T Consensus 13 en~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~kG~afV~f~~~~~A~~Ai~~l--ng~~~~gr 89 (99)
T 4fxv_A 13 ENLYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRD-KVAGHSLGYGFVNYVTAKDAERAINTL--NGLRLQSK 89 (99)
T ss_dssp ---CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC-SSSCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTE
T ss_pred ccccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeec-CCCCcccccEEEEECCHHHHHHHHHHh--CCCEECCE
Confidence 334556779999999999999999999999999999999999 889999999999999999999999999 99999999
Q ss_pred eeeeecccc
Q 003749 225 VLTVKLDDG 233 (798)
Q Consensus 225 ~~~v~~~~~ 233 (798)
+|+|++|+|
T Consensus 90 ~l~V~~AkP 98 (99)
T 4fxv_A 90 TIKVSYARP 98 (99)
T ss_dssp ECEEEECCB
T ss_pred EEEEEEeeC
Confidence 999999976
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=8.1e-19 Score=185.23 Aligned_cols=331 Identities=12% Similarity=0.010 Sum_probs=175.6
Q ss_pred HhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHH-HHHHHHHCCCC-C--CHHHHHHHHHHHHccCChHH
Q 003749 274 VETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQ-TFENMRARGIE-P--TLHVYTNLIHAYAVGRDMEE 349 (798)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~~~~~~~-~--~~~~~~~ll~~~~~~g~~~~ 349 (798)
+..+...|......+..+...+.. ++.-.|++++|+. .|++..+.... | +...+..+...|.+.|++++
T Consensus 10 i~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (368)
T 1fch_A 10 IESDVDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN 82 (368)
T ss_dssp -------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH
T ss_pred cccCcccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH
Confidence 344444555554444433322211 3444578888888 77766654211 1 34567788888888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003749 350 ALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (798)
Q Consensus 350 A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 429 (798)
|+.+|+++++.. +.+..+|..++.+|.+.|++++|++.|+++.+.+. .+..++..++.+|...|++++|.+.++++.+
T Consensus 83 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 83 AVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988864 34778888888889999999999999998887753 3677888888888888888888888888887
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHH
Q 003749 430 EGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKH-NMKT 508 (798)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~ 508 (798)
... .+...+..+... .. .. . ....+..+...+ ..|++++|+.+|+++.+..... +..+
T Consensus 161 ~~~-~~~~~~~~~~~~-------~~-------~~----~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 161 YTP-AYAHLVTPAEEG-------AG-------GA----G-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp TST-TTGGGCC----------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred hCc-CcHHHHHHHHHH-------hh-------hh----c-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 642 222222211000 00 00 0 000111112222 5555555555555555432111 3455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 003749 509 YSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFAR 588 (798)
Q Consensus 509 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 588 (798)
+..+...|...|++++|+..|+++.+.... +..++..+...|...|++++|+..|+++...... +...+..+..+|.+
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 555555555555555555555555554322 4455555666666666666666666665554322 34455556666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003749 589 AGEMKRALEIFDMMRRSGCIP----------TVHTFNALILGLVEKRQMEKAIEILDE 636 (798)
Q Consensus 589 ~~~~~~a~~~~~~~~~~~~~p----------~~~~~~~li~~~~~~~~~~~A~~~~~~ 636 (798)
.|++++|...|+++.+..... ...+|..+..+|...|++++|..++++
T Consensus 298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 666666666666555432211 145666666666666766666666553
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=2.6e-18 Score=181.35 Aligned_cols=292 Identities=11% Similarity=0.028 Sum_probs=197.1
Q ss_pred chhhhhhHHHH-HHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 003749 258 TWHKEREWHRR-EFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTN 336 (798)
Q Consensus 258 ~~~~~~~~a~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 336 (798)
.|.+.++.|.. .|++++...+.+- ..+...+..+...|.+.|++++|+.+|+++.+.. +.+..++..
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 103 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENP-----------LRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQY 103 (368)
T ss_dssp ----------CHHHHCCCCCCSSCT-----------TTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCc-----------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 46666688887 8887776665410 1134567888999999999999999999999985 557889999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH----------
Q 003749 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGN---------- 406 (798)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---------- 406 (798)
+..+|.+.|++++|+..|+++++.. +.+..++..++.+|...|++++|++.|+++...... +...+..
T Consensus 104 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 181 (368)
T 1fch_A 104 LGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGL 181 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-----------
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999875 347899999999999999999999999999987543 2222221
Q ss_pred -----HHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 003749 407 -----IIYAQCQTRNMERAEALVRDMEEEGIDA-PIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINL 480 (798)
Q Consensus 407 -----l~~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 480 (798)
.+..+...|++++|.+.|+++.+..... +..++..+...|...|++++|+..|+++.+... .+..+|..+..+
T Consensus 182 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~ 260 (368)
T 1fch_A 182 GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGAT 260 (368)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHH
Confidence 1222336677777777777776654211 456666677777777777777777777666432 245666666777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHH
Q 003749 481 YTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKP----------DVVLYNNIIRA 550 (798)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~----------~~~~~~~li~~ 550 (798)
|...|++++|+..|+++.+.. +.+...+..+..+|.+.|++++|...|+++.+..... ...+|..+..+
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (368)
T 1fch_A 261 LANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 339 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHH
Confidence 777777777777777666543 2345566666666666677777766666665532221 14556666666
Q ss_pred HHcCCChHHHHHHHH
Q 003749 551 FCGMGNMDRAIHIVK 565 (798)
Q Consensus 551 ~~~~g~~~~A~~~~~ 565 (798)
|...|+.++|..++.
T Consensus 340 ~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 340 LSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHTCGGGHHHHHT
T ss_pred HHHhCChHhHHHhHH
Confidence 666666666655544
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=1.4e-15 Score=173.49 Aligned_cols=380 Identities=10% Similarity=0.113 Sum_probs=295.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003749 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGI--EMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (798)
Q Consensus 333 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (798)
--...+++|+..|.+.+|+++++++.-.+- .-+....+.|+.+..+. +..+..+..++... .....+..+
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANI 1058 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHH
Confidence 345677888899999999999999984421 13445667777777777 45666666665532 124457788
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 003749 411 QCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKA 490 (798)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 490 (798)
+...|++++|..+|++... .....+.+ +...+++++|.++.++.. +..+|..+..++...|++++|
T Consensus 1059 ai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999998631 11222222 337889999999998762 578899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 003749 491 LEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKE 570 (798)
Q Consensus 491 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 570 (798)
++.|.+. .|...|..++.+|.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...++ .
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 9999664 367788889999999999999999999887754 23333445999999999988644432 2
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003749 571 RHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYT 650 (798)
Q Consensus 571 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~ 650 (798)
.++...|..+...|...|++++|..+|..+ ..|..+..+|++.|++++|++.+++. .+..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence 235567778999999999999999999985 47999999999999999999999876 3568999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-
Q 003749 651 TIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARR- 729 (798)
Q Consensus 651 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 729 (798)
.+..+|...|+++.|......+ ..+...+..++..|.+.|.+++|+.+++.....+ +.....|+-|..+|++.
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCC
Confidence 9999999999999998876643 3466778899999999999999999999998766 56667888888888764
Q ss_pred -CCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHcCCcccccc
Q 003749 730 -GDVWEAADLMQQMKQEGVQP------DVHTYTSFINACSKAGDMQVRFS 772 (798)
Q Consensus 730 -g~~~~A~~~~~~m~~~g~~p------d~~~~~~l~~~~~~~g~~~~a~~ 772 (798)
++..+++++|..-.. +.+ +...|..++-.|.+.|+++.|..
T Consensus 1329 peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1329 PQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 466677776664332 222 56789999999999999999984
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=2.9e-18 Score=180.82 Aligned_cols=236 Identities=8% Similarity=-0.065 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003749 331 LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (798)
Q Consensus 331 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (798)
...+..+...+.+.|++++|+.+|+++++.. +.+..+|..++.+|.+.|++++|+..|+++...+. .+..++..++.+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3346666667777777777777777776653 23566677777777777777777777777766532 256666667777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC---------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHH
Q 003749 411 QCQTRNMERAEALVRDMEEEGID---------APIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFS-PSIISYGCLINL 480 (798)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~ 480 (798)
|...|++++|++.|+++.+.... ....++..+...|...|++++|+.+|+++.+.... .+..++..+..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 77777777777777766654210 00122233456666666666666666666654321 145566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHH
Q 003749 481 YTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRA 560 (798)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 560 (798)
|...|++++|++.|+++.+.. +.+..+|..+..+|.+.|++++|+..|+++.+.... +..++..+..+|.+.|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHH
Confidence 666666666666666666543 234556666666666666666666666666655333 455566666666666666666
Q ss_pred HHHHHHHHHC
Q 003749 561 IHIVKEMQKE 570 (798)
Q Consensus 561 ~~~~~~~~~~ 570 (798)
...|+++...
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666665543
No 27
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=1.7e-19 Score=150.23 Aligned_cols=82 Identities=15% Similarity=0.342 Sum_probs=78.1
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||+||++++++++|+++|++||.|.+|+|++| +.||+++|||||+|++.++|.+|++.| ||..++||.|+|++
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d-~~tg~~rG~aFV~f~~~~~A~~Ai~~l--ng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLH-PRTRKHLGLARVLFTSTRGAKETVKNL--HLTSVMGNIIHAQL 82 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEC-CCCCceeeEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEEE
Confidence 459999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
++.+.
T Consensus 83 a~~~~ 87 (110)
T 3s8s_A 83 DIKGQ 87 (110)
T ss_dssp CSTTH
T ss_pred CCCCc
Confidence 96653
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=2.2e-16 Score=172.79 Aligned_cols=142 Identities=10% Similarity=-0.034 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCChHHHHHH
Q 003749 592 MKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEH--TYTTIMH-GYASLGDTGKAFEY 668 (798)
Q Consensus 592 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--t~~~li~-~~~~~g~~~~A~~~ 668 (798)
++.|...|+++.+.... +...+..+...|...|++++|+..|++.++....+... .+..+.. .+...|+.++|+..
T Consensus 316 ~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~ 394 (472)
T 4g1t_A 316 IGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH 394 (472)
T ss_dssp HHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34555555555544322 33444455555555555555555555555443221111 1122221 22355666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003749 669 FTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEG 746 (798)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 746 (798)
|.+.++... +..... +..+.+..++++....+ +.+..+|+.|+.+|...|++++|++.|++.++.|
T Consensus 395 y~kal~i~~--~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 395 FIEGVKINQ--KSREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHSCC--CCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHhcCc--ccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 666665432 211111 11233444555555444 4566677777777777777777777777776643
No 29
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=145.69 Aligned_cols=78 Identities=18% Similarity=0.396 Sum_probs=73.8
Q ss_pred ceeecCCCccCchHHHHHHhcccCc--ceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCe----eecceee
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGP--IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGV----EFHGRVL 226 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~--v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~----~~~g~~~ 226 (798)
+|||+|||+++|+++|+++|++||. |.+|++++| +.||++||||||+|.+.++|.+|++.| ||. .|+||+|
T Consensus 11 tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d-~~tg~srG~aFV~f~~~~~A~~Ai~~l--ng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 11 TIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKD-KQTQQNRGFAFVQLSSAMDASQLLQIL--QSLHPPLKIDGKTI 87 (95)
T ss_dssp EEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCC-SSSSSCSSEEEEECSSSHHHHHHHHHH--HSSSSCEEETTEEE
T ss_pred EEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEec-CCCCCCceEeEEEECCHHHHHHHHHHh--cCCCCCceECCEEE
Confidence 8999999999999999999999995 679999999 899999999999999999999999999 886 5999999
Q ss_pred eeecccc
Q 003749 227 TVKLDDG 233 (798)
Q Consensus 227 ~v~~~~~ 233 (798)
+|++|++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999975
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=7.5e-18 Score=177.61 Aligned_cols=267 Identities=7% Similarity=-0.042 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 471 IISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRA 550 (798)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 550 (798)
...+..+...+.+.|++++|+.+|+++.+.. +.+...|..+..+|...|++++|+..|+++.+.... +..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3345666666666666666666666666543 335566666666666666666666666666665433 45666666666
Q ss_pred HHcCCChHHHHHHHHHHHHCCCCC---------CcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 003749 551 FCGMGNMDRAIHIVKEMQKERHRP---------TSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCI-PTVHTFNALILG 620 (798)
Q Consensus 551 ~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~ 620 (798)
|...|++++|+..|+++.+..... ....+..+...+.+.|++++|+.+|+++.+.... .+..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 777777777777766666543210 1122233455666667777777777766665322 145666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHH
Q 003749 621 LVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSA 700 (798)
Q Consensus 621 ~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 700 (798)
|...|++++|+..|+++.+.. +.+..+|..+..+|...|++++|+..|+++++.... +..++..+..+|.+.|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHH
Confidence 666677777777776666543 334566666666666667777777766666665432 466666666666666666666
Q ss_pred HHHHHHHHhCCC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003749 701 LAVTKEMSAQKI-----------PRNTFVYNILIDGWARRGDVWEAADLMQQ 741 (798)
Q Consensus 701 ~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (798)
...++++.+..- ..+..+|..|..++...|+.+.+.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 666666654320 00234566666666666666665555443
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=9.9e-17 Score=175.55 Aligned_cols=364 Identities=12% Similarity=-0.008 Sum_probs=184.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEE--------GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH----- 396 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 396 (798)
....||.|...+...|++++|++.|++.++. .-.....+|+.+..+|...|++++|+..|+++....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456788888888888888888888776542 112245677778888888888888888887765421
Q ss_pred --CCCChhhHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCc
Q 003749 397 --ATLNAIIYGNIIYAQCQ--TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGY---TIIGNEEKCLIVFERLKECGFSP 469 (798)
Q Consensus 397 --~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~ 469 (798)
......++..+..++.. .+++++|++.|++.++.. +.+...+..+..++ ...++.++|++.|++..+....
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 01123444444444433 345677777777776653 23344444444432 3345556666666666654322
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003749 470 SIISYGCLINLYTK----IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYN 545 (798)
Q Consensus 470 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 545 (798)
+..++..+...+.. .+++++|.+++++..... +.+...+..+...|...|++++|+..|++..+..+. +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 34444444444333 344556666666665543 334555666666666666666666666666655433 445555
Q ss_pred HHHHHHHcC-------------------CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003749 546 NIIRAFCGM-------------------GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSG 606 (798)
Q Consensus 546 ~li~~~~~~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 606 (798)
.+..+|... +..++|...|++....... +...+..+...|.+.|++++|+..|+++.+..
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 555554321 1234455555555444322 44455555556666666666666666655543
Q ss_pred CCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003749 607 CIPTV--HTFNALIL-GLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFT 683 (798)
Q Consensus 607 ~~p~~--~~~~~li~-~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 683 (798)
..+.. ..+..+.. .+...|++++|+..|++.++. .|+...... ..+.+.+++++.++.... +..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~p~-~~~~ 432 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKNGA-DSEA 432 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHCC--CTTH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhCCC-CHHH
Confidence 22111 11111211 223455566666666655543 222221111 122333444444444322 4445
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003749 684 YEALLKACCKSGRMQSALAVTKEMSAQ 710 (798)
Q Consensus 684 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (798)
|..|..+|...|++++|++.|++.++.
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 555666666666666666666655554
No 32
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=7.5e-20 Score=147.08 Aligned_cols=83 Identities=16% Similarity=0.273 Sum_probs=76.4
Q ss_pred cceeecCCCccCchHHHHHHhcccC-cceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.+|||+|||+++|+++|+++|++|| .|.+|++++| +.||++||||||+|.+.++|.+|++.+ .|+..++||+|+|++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d-~~t~~~rg~aFV~F~~~~~A~~Ai~~~-~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRN-KSSGQSRGFAFVEFSHLQDATRWMEAN-QHSLNILGQKVSMHY 79 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSC-SSSCCCSSEEEEECSSHHHHHHHHHTT-TTEEEETTEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEec-CCCCCcCceEEEEecCHHHHHHHHHhc-CCCeEECCEEEEEEE
Confidence 5899999999999999999999999 8999999999 899999999999999999999999875 145679999999999
Q ss_pred ccccch
Q 003749 231 DDGRRL 236 (798)
Q Consensus 231 ~~~~~~ 236 (798)
++++..
T Consensus 80 a~~~~~ 85 (91)
T 2lxi_A 80 SDPKPK 85 (91)
T ss_dssp CCSCCC
T ss_pred cCCCCC
Confidence 988753
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=9.8e-18 Score=172.12 Aligned_cols=376 Identities=13% Similarity=0.152 Sum_probs=150.7
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003749 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADH 387 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (798)
+.|++++|.+.++++. +..+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4556677777777762 2246777777777777777777777442 255567777777777777777777
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003749 388 WFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (798)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (798)
+++..++. ..+..+.+.++.+|.+.|++++++++++ .|+..+|+.++..|...|++++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 66655543 2345566667777777777777666663 244557777777777777777777777755
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 468 SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNI 547 (798)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 547 (798)
..|..|+.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|......+. .++.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 35667777777777777777777766 156777777777777777777754444321 233444456
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCC------CCHHHHHHHHH
Q 003749 548 IRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARA--GEMKRALEIFDMMRRSGCI------PTVHTFNALIL 619 (798)
Q Consensus 548 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~------p~~~~~~~li~ 619 (798)
+..|.+.|++++|+.+|+...... .-....|+.|..+|++- +++.+.+++|..-. ++. -+...|..++.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHH
Confidence 677777777777777777766554 23445555555555543 33444444443111 111 13456777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CC-------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003749 620 GLVEKRQMEKAIEILDEMTLA-GI-------------SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYE 685 (798)
Q Consensus 620 ~~~~~~~~~~A~~~~~~m~~~-~~-------------~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 685 (798)
.|.+-++++.|.... .+. .. ..+...|-..+.-|... .-.++.-+-..+... .|. +
T Consensus 291 ly~~~~e~d~A~~tm---~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p~~l~~ll~~l~~~--ld~---~ 360 (449)
T 1b89_A 291 LYDKYEEYDNAIITM---MNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPR--LDH---T 360 (449)
T ss_dssp HHHHTTCHHHHHHHH---HHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGG--CCH---H
T ss_pred HHHhhchHHHHHHHH---HhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc--cCc---H
Confidence 788888888776543 222 11 22334444444444411 111122222222111 122 4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003749 686 ALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQ 740 (798)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 740 (798)
.++..+.+.|.+.-+..++..+... .+..+=..|-+.|....|++.-...++
T Consensus 361 r~v~~~~~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 361 RAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp HHHHHHHHTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4556667777777777777776654 355555667777777777765554444
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=2.7e-17 Score=168.85 Aligned_cols=373 Identities=8% Similarity=0.074 Sum_probs=177.2
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
++|...|+++- ....|+.|+.++.+.|++++|++.|.+. +|..+|..++..+..
T Consensus 20 d~A~~fae~~~--------------------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~ 73 (449)
T 1b89_A 20 DRAYEFAERCN--------------------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANT 73 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhCC--------------------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHh
Confidence 77777777771 2346789999999999999999999653 477799999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 003749 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEAL 423 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 423 (798)
.|++++|+..++..++. .++..+.+.++.+|.+.|+++++.++++ .++..+|..++..|...|++++|...
T Consensus 74 ~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 74 SGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp -------------------------------------CHHHHTTTTT-------CC----------------CTTTHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999988877764 3467889999999999999999998885 25777999999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003749 424 VRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIK 503 (798)
Q Consensus 424 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 503 (798)
|..+ ..|..|+.++.+.|++++|.+.+.++ -++.+|..++.+|...|+++.|......+ .
T Consensus 145 Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~ 204 (449)
T 1b89_A 145 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----V 204 (449)
T ss_dssp HHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----T
T ss_pred HHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----H
Confidence 9977 46999999999999999999999998 27899999999999999999996655542 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHCCCCC------C
Q 003749 504 HNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGM--GNMDRAIHIVKEMQKERHRP------T 575 (798)
Q Consensus 504 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~------~ 575 (798)
........++..|.+.|++++|+.+++..+... .-....|+.|.-+|++- +++.+.+++|..- .++.+ +
T Consensus 205 ~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~ 281 (449)
T 1b89_A 205 VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQ 281 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHT
T ss_pred hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHH
Confidence 344445578899999999999999999988765 33577788887777765 3455555555421 11111 5
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003749 576 SRTFMPIIHGFARAGEMKRALEIFDMMRRSGC-----------IPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISP 644 (798)
Q Consensus 576 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 644 (798)
...|..+...|.+.++++.|....-+-..... ..+...|-..|.-|.... ..++.-+-..... +.
T Consensus 282 ~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~--p~~l~~ll~~l~~--~l 357 (449)
T 1b89_A 282 AHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK--PLLLNDLLMVLSP--RL 357 (449)
T ss_dssp TTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHC--GGGHHHHHHHHGG--GC
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcC--HHHHHHHHHHHHh--cc
Confidence 67899999999999999988775433211100 113334444444333111 1111111111111 11
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003749 645 NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVT 704 (798)
Q Consensus 645 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 704 (798)
| .+.++..+.+.|++.-+..++..+.+.+ +..+-.+|-..|....+++.-..-+
T Consensus 358 d---~~r~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed~~~lr~si 411 (449)
T 1b89_A 358 D---HTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 411 (449)
T ss_dssp C---HHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred C---cHHHHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 1 2334455566666666666666665432 4455556666666666665444433
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=7.7e-17 Score=166.77 Aligned_cols=264 Identities=8% Similarity=-0.040 Sum_probs=180.3
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...+..+...+...|++++|+.+|+++.+.. +.+..++..+..+|.+.|++++|+..|+++.+.. +.+..++..++..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3456777888999999999999999998874 4477888899999999999999999999998874 3478889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNI--------------IY-AQCQTRNMERAEALVRDMEEEGIDAPIDIYH 440 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 440 (798)
|...|++++|++.|+++...... +...+..+ .. ++...|++++|.+.++++.+.. +.+..++.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 99999999999999999886433 33333333 22 3556666777777777766654 33556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003749 441 MMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLK 520 (798)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 520 (798)
.++..|...|++++|+..++++.+... .+..+|..+..+|...|++++|+..|+++.+.. +.+...+..+...|...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 666677777777777777776665432 245566666666666666666666666666543 234556666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHcCCChHHHHHHHH
Q 003749 521 DWANVFAVFEDVMRDGLKP-----------DVVLYNNIIRAFCGMGNMDRAIHIVK 565 (798)
Q Consensus 521 ~~~~a~~~~~~~~~~g~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~ 565 (798)
++++|...|+++.+..... +...|..+..++.+.|+.++|..+++
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6666666666665543221 24455555666666666666655554
No 36
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=5.7e-19 Score=157.27 Aligned_cols=84 Identities=13% Similarity=0.364 Sum_probs=78.5
Q ss_pred cccceeecCCCccCchHHHHHHhcccC--cceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFG--PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
..++||||||++++++++|+++|++|| .|.+|+++.| +.+|+++|||||+|.+.++|.+|++.| ||..|+||.|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d-~~tg~skGfaFV~f~~~~~A~~Ai~~l--ng~~~~Gr~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAEN-RANGQSKGYAEVVVASENSVHKLLELL--PGKVLNGEKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHHHS--TTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCeEeE
Confidence 346999999999999999999999999 9999999999 899999999999999999999999999 99999999999
Q ss_pred eecccccch
Q 003749 228 VKLDDGRRL 236 (798)
Q Consensus 228 v~~~~~~~~ 236 (798)
|+++.+...
T Consensus 131 V~~a~~~~~ 139 (156)
T 3n9u_C 131 VRPATRQNL 139 (156)
T ss_dssp EEECCHHHH
T ss_pred EEEcCCCcc
Confidence 999977643
No 37
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=3e-18 Score=146.49 Aligned_cols=80 Identities=24% Similarity=0.431 Sum_probs=75.8
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 115 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFID-KQTSLSKCFGFVSFDNPDSAQVAIKAM--NGFQVGTKRLKVQ 115 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCC-SSSSCCCCEEEEEEESSHHHHHHHHHC--CCCEETTEECCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCCCcCcEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 3469999999999999999999999999999999998 889999999999999999999999999 9999999999999
Q ss_pred ccc
Q 003749 230 LDD 232 (798)
Q Consensus 230 ~~~ 232 (798)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 38
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=1.4e-16 Score=164.72 Aligned_cols=259 Identities=7% Similarity=-0.064 Sum_probs=140.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 003749 477 LINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGN 556 (798)
Q Consensus 477 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 556 (798)
+...+...|++++|+.+|+++.+.. +.+...+..+...|...|++++|...|+++.+.... +..++..+...|...|+
T Consensus 27 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 27 EGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHcCC
Confidence 3333444444444444444443322 123333444444444444444444444444443222 33444444444444455
Q ss_pred hHHHHHHHHHHHHCCCCCCcccHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 557 MDRAIHIVKEMQKERHRPTSRTFMPI--------------IH-GFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGL 621 (798)
Q Consensus 557 ~~~A~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 621 (798)
+++|+..++++...... +...+..+ .. .+...|++++|..+++++.+.... +...+..+...|
T Consensus 105 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 182 (327)
T 3cv0_A 105 ANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLY 182 (327)
T ss_dssp HHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence 55555444444443221 11122111 11 255566677777777777665433 566666677777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHH
Q 003749 622 VEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSAL 701 (798)
Q Consensus 622 ~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 701 (798)
...|++++|+..++++.+.. +.+..+|..+...+...|++++|...|+++.+.... +..++..+..+|.+.|++++|.
T Consensus 183 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHH
Confidence 77777777777777766543 334566667777777777777777777776665432 5666666777777777777777
Q ss_pred HHHHHHHhCCCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 702 AVTKEMSAQKIPR------------NTFVYNILIDGWARRGDVWEAADLMQQM 742 (798)
Q Consensus 702 ~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (798)
..++++.+.. +. +...|..+..++.+.|++++|..++++.
T Consensus 261 ~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 261 KQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7777666543 11 3556666777777777777777666543
No 39
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=4.1e-19 Score=143.07 Aligned_cols=81 Identities=21% Similarity=0.337 Sum_probs=72.6
Q ss_pred cceeecCCCccCchHHHHHHhcccC--cceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFG--PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
.+|||||||+++++++|+++|++|| .|.+++++.| +.+|+++|||||+|.+.++|.+|++.| ||..++||.|+|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~-~~~g~~kG~afV~f~~~~~a~~Ai~~l--~g~~~~gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFEN-RANGQSKGFALVGVGSEASSKKLMDLL--PKRELHGQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEEC-TTTCCEEEEEEECC-CHHHHHHHHHHG--GGSCSSSCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEec-CCCCccCcEEEEEECCHHHHHHHHHHc--CCCeeCCEEEEEE
Confidence 5899999999999999999999999 9999999999 889999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++.+..
T Consensus 79 ~~~~~~ 84 (90)
T 3p5t_L 79 PSNKLE 84 (90)
T ss_dssp CC----
T ss_pred ECCCCc
Confidence 997763
No 40
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=140.72 Aligned_cols=81 Identities=17% Similarity=0.303 Sum_probs=73.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||+++++++|+++|++||.|.+|+|+++ ||||||+|++.++|.+|++.+..++..|+||+|+|+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 3469999999999999999999999999999999987 899999999999999999987223578999999999
Q ss_pred cccccchh
Q 003749 230 LDDGRRLK 237 (798)
Q Consensus 230 ~~~~~~~~ 237 (798)
+++++...
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99887654
No 41
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=5.9e-19 Score=145.01 Aligned_cols=83 Identities=19% Similarity=0.190 Sum_probs=78.7
Q ss_pred ccceeecCCCc------cCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc-
Q 003749 151 EGKIFVGNLPN------WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG- 223 (798)
Q Consensus 151 ~~~~~v~nl~~------~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g- 223 (798)
+++|||||||. ++++++|+++|++||.|.+|+|++| +.||+++|||||+|.+.++|.+|++.| ||..++|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d-~~tg~~kG~afV~f~~~~~A~~Ai~~l--ng~~~~g~ 82 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPID-EATGKTKGFLFVECGSMNDAKKIIKSF--HGKRLDLK 82 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEE-TTTTEECSEEEEEESSHHHHHHHHHHH--TTCBSSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEc-CCCCccceEEEEEECCHHHHHHHHHHh--CCcccCCC
Confidence 45899999999 9999999999999999999999999 889999999999999999999999999 9999999
Q ss_pred eeeeeecccccch
Q 003749 224 RVLTVKLDDGRRL 236 (798)
Q Consensus 224 ~~~~v~~~~~~~~ 236 (798)
|.|+|.+++++..
T Consensus 83 r~l~V~~a~~~~~ 95 (100)
T 3ns6_A 83 HRLFLYTMKDVER 95 (100)
T ss_dssp CBCEEEESHHHHH
T ss_pred eEEEEEECchhhh
Confidence 9999999987643
No 42
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.75 E-value=2.6e-18 Score=136.54 Aligned_cols=80 Identities=20% Similarity=0.375 Sum_probs=77.1
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
.+|||||||.++++++|+++|++||.|.+++++++ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~~~~~g~afV~f~~~~~a~~a~~~l--~g~~~~g~~l~v~~a 78 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD-MQTGSSRGYGFVSFTSQDDAQNAMDSM--QGQDLNGRPLRINWA 78 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHHHH--TTCEETTEECEEEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEc-CCCCCccceEEEEECCHHHHHHHHHHh--cCCeeCCcEEEEEec
Confidence 58999999999999999999999999999999998 789999999999999999999999999 999999999999999
Q ss_pred ccc
Q 003749 232 DGR 234 (798)
Q Consensus 232 ~~~ 234 (798)
+++
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 876
No 43
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=4.3e-18 Score=139.22 Aligned_cols=84 Identities=14% Similarity=0.407 Sum_probs=79.6
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
+++|||||||.++++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~ 78 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFD-PQTGRSKGYAFIEFRDLESSASAVRNL--NGYQLGSRFLKCGY 78 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC-TTTCCBCSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCCccceEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEEE
Confidence 469999999999999999999999999999999998 889999999999999999999999999 99999999999999
Q ss_pred ccccchh
Q 003749 231 DDGRRLK 237 (798)
Q Consensus 231 ~~~~~~~ 237 (798)
++++...
T Consensus 79 a~~~~~~ 85 (96)
T 2x1f_A 79 SSNSDIS 85 (96)
T ss_dssp CSCSSGG
T ss_pred cCCCCCC
Confidence 9887643
No 44
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=2.5e-18 Score=131.00 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=70.2
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
...||||||++.+||++|+++|.+||+|.+++++.. ||||||+|.+.++|.+|++.| |+..+.||.|+|++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~-------kGfaFVey~~~~eA~~Ai~~L--n~~~l~gr~I~V~~ 77 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN-------QGIALCKYTTREEANKAQMAL--NNCVLANTTIFAES 77 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHH--TTEEETTEEEEEEC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC-------CcEEEEEECCHHHHHHHHHHh--cCCEECCcEEEEEE
Confidence 348999999999999999999999999999999764 999999999999999999999 99999999999999
Q ss_pred cccc
Q 003749 231 DDGR 234 (798)
Q Consensus 231 ~~~~ 234 (798)
|...
T Consensus 78 A~e~ 81 (89)
T 2wbr_A 78 PSEN 81 (89)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 9543
No 45
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=2.7e-18 Score=137.84 Aligned_cols=82 Identities=23% Similarity=0.394 Sum_probs=76.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||.++++++|+++|++||.|.++++.++ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~ 81 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKD-MATGKSKGYGFVSFFNKWDAENAIQQM--GGQWLGGRQIRTN 81 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEE
Confidence 4569999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
+++++
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 98764
No 46
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=6.8e-18 Score=137.69 Aligned_cols=80 Identities=19% Similarity=0.486 Sum_probs=76.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKD-KDTRKSKGVAFILFLDKDSAQNCTRAI--NNKQLFGRVIKAS 91 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCC-SSSCCCTTCEEEEESCHHHHHHHHHHT--TTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCCCcccEEEEEECCHHHHHHHHHHc--CCCeeCCcEEEEE
Confidence 4469999999999999999999999999999999998 888999999999999999999999999 9999999999999
Q ss_pred ccc
Q 003749 230 LDD 232 (798)
Q Consensus 230 ~~~ 232 (798)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 875
No 47
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=3e-18 Score=136.73 Aligned_cols=79 Identities=14% Similarity=0.252 Sum_probs=72.2
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCee--ecceee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE--FHGRVL 226 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~--~~g~~~ 226 (798)
.++++|||||||+++++++|+++|++||.|.+|+++++ ||||||+|++.++|.+|++.+ |+.. ++||+|
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-------kg~AFVef~~~~~A~~Av~~l--n~~~~~i~Gr~i 89 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-------KRQALVEFEDVLGACNAVNYA--ADNQIYIAGHPA 89 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHH--HHSCEEETTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHh--cCCCceeCCcEE
Confidence 45679999999999999999999999999999999876 899999999999999999999 7664 889999
Q ss_pred eeecccccch
Q 003749 227 TVKLDDGRRL 236 (798)
Q Consensus 227 ~v~~~~~~~~ 236 (798)
+|++++++.+
T Consensus 90 ~V~~S~~k~l 99 (100)
T 3r27_A 90 FVNYSTSQKI 99 (100)
T ss_dssp EEEECSCSCC
T ss_pred EEEecccccc
Confidence 9999988753
No 48
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.3e-18 Score=138.30 Aligned_cols=81 Identities=23% Similarity=0.415 Sum_probs=77.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.+|++..+ +.+|+++|||||+|.+.++|.+|+..| ||..++|++|+|+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD-QQSRRSRGFAFVYFENVDDAKEAKERA--NGMELDGRRIRVS 90 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEEC-SSSSSEEEEEEEEESSHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEc-CCCCCcccEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 4569999999999999999999999999999999998 888999999999999999999999999 9999999999999
Q ss_pred cccc
Q 003749 230 LDDG 233 (798)
Q Consensus 230 ~~~~ 233 (798)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9875
No 49
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=4e-18 Score=136.15 Aligned_cols=80 Identities=24% Similarity=0.457 Sum_probs=76.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+++++++ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD-YETEKHRGFAFVEFELAEDAAAAIDNM--NESELFGRTIRVN 82 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEE-TTTTEECSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEEC-CCCCccccEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 4569999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred ccc
Q 003749 230 LDD 232 (798)
Q Consensus 230 ~~~ 232 (798)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 875
No 50
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=8.1e-18 Score=138.89 Aligned_cols=82 Identities=21% Similarity=0.434 Sum_probs=77.7
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.+|++..+ + +|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 91 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTN-R-AGKPKGLAYVEYENESQASQAVMKM--DGMTIKENIIKVA 91 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC-T-TSCEEEEEEEEESSHHHHHHHHHHH--TTEESSSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEEC-C-CCCEEeEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 4469999999999999999999999999999999998 5 8999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 998774
No 51
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-18 Score=141.82 Aligned_cols=79 Identities=28% Similarity=0.440 Sum_probs=74.6
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++|||||||.++++++|+++|++|| |.+|+++++...+|+++|||||+|.+.++|.+|+ .| ||..|+|+.|+|+++
T Consensus 20 ~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l--~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 20 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SL--NEESLGNRRIRVDVA 95 (100)
T ss_dssp CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HT--TTCCBTTBCCCCEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hc--CCCEECCeEEEEEec
Confidence 4999999999999999999999999 9999999983369999999999999999999999 88 999999999999999
Q ss_pred ccc
Q 003749 232 DGR 234 (798)
Q Consensus 232 ~~~ 234 (798)
+++
T Consensus 96 ~~~ 98 (100)
T 2j76_E 96 DQA 98 (100)
T ss_dssp CCS
T ss_pred cCC
Confidence 776
No 52
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=8.4e-16 Score=155.13 Aligned_cols=253 Identities=9% Similarity=0.068 Sum_probs=175.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIEPTL--HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG 380 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 380 (798)
|+.....|+++.|+..++..... .|+. .....+.++|...|++++|+..++.. -+++..++..++..+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCC
Confidence 34455678888888877765543 2332 34455677888888888888766442 2456677777888888888
Q ss_pred CHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 003749 381 NAEAADHWFEEAKERHA-TLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459 (798)
Q Consensus 381 ~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (798)
+.++|++.|+++...+. +-+...+..+..+|...|++++|++.+++ +.+..++..++.+|.+.|+.++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88888888888776653 33566667777788888888888888876 346677777788888888888888888
Q ss_pred HHHHHCCCCcCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003749 460 ERLKECGFSPSIISY---GCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDG 536 (798)
Q Consensus 460 ~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 536 (798)
+++.+.. |+.... ..++..+...|++++|+.+|+++.+.. +.+...++.+..+|.+.|++++|...|+++++..
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8887753 332211 122344444577888888888877763 4567777777777778888888888888777765
Q ss_pred CCCCHHHHHHHHHHHHcCCChHH-HHHHHHHHHHCC
Q 003749 537 LKPDVVLYNNIIRAFCGMGNMDR-AIHIVKEMQKER 571 (798)
Q Consensus 537 ~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~ 571 (798)
+. +..++..++..+...|+.++ +..+++++.+..
T Consensus 231 p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 44 66677777777777777765 456777776653
No 53
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-17 Score=146.13 Aligned_cols=82 Identities=20% Similarity=0.478 Sum_probs=78.4
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||.++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|++
T Consensus 42 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 42 LRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCD-RETRQSRGYGFVKFQSGSSAQQAIAGL--NGFNILNKRLKVAL 118 (139)
T ss_dssp TSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEE-TTTTEEEEEEEEEESSHHHHHHHHHHT--TTEECSSCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEc-CCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEEE
Confidence 459999999999999999999999999999999998 789999999999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
++++.
T Consensus 119 a~~~~ 123 (139)
T 1u6f_A 119 AASGH 123 (139)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98775
No 54
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.73 E-value=3.5e-18 Score=148.51 Aligned_cols=82 Identities=16% Similarity=0.349 Sum_probs=77.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceE--EEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCe----eecc
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKN--VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGV----EFHG 223 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~--~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~----~~~g 223 (798)
..++|||||||+++++++|+++|++||.|.. |+|++| +.+|++||||||+|.+. +|.+|+..| ||. .++|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d-~~tg~~rG~aFV~f~~~-~a~~Ai~~l--~g~~~~~~~~g 97 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKD-KQTQLNRGFAFIQLSTI-EAAQLLQIL--QALHPPLTIDG 97 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBC-SSSSSBCSCEEEECCHH-HHHHHHHHH--TTCCCSCCGGG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEc-CCCCCcceEEEEEECCH-HHHHHHHHh--cCCCCCccCCC
Confidence 3459999999999999999999999999976 999999 88999999999999999 999999999 999 9999
Q ss_pred eeeeeecccccc
Q 003749 224 RVLTVKLDDGRR 235 (798)
Q Consensus 224 ~~~~v~~~~~~~ 235 (798)
|.|+|++++++.
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999998764
No 55
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.6e-18 Score=140.76 Aligned_cols=84 Identities=24% Similarity=0.413 Sum_probs=79.5
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||+|||.++++++|+++|++||.|.+|++.++ +.+|+++|||||+|.+.++|.+|+..| ||..|+|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v 89 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKD-KTTGQSKGFAFISFHRREDAARAIAGV--SGFGYDHLILNV 89 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEEC-SSSCSEEEEEEEEESSHHHHHHHHHHT--TTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeec-CCCCceeeEEEEEECCHHHHHHHHHHc--CCCeeCCcEEEE
Confidence 34569999999999999999999999999999999998 889999999999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
++++++.
T Consensus 90 ~~a~~~~ 96 (103)
T 2cq0_A 90 EWAKPST 96 (103)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9998775
No 56
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.8e-18 Score=140.05 Aligned_cols=85 Identities=25% Similarity=0.459 Sum_probs=80.0
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.+|+++.+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|+
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD-YETEKHRGFAFVEFELAEDAAAAIDNM--NESELFGRTIRVN 87 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCC-SSSCCCSSEEEECCSSHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 4569999999999999999999999999999999998 889999999999999999999999999 9999999999999
Q ss_pred cccccchh
Q 003749 230 LDDGRRLK 237 (798)
Q Consensus 230 ~~~~~~~~ 237 (798)
+++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99887533
No 57
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=1.4e-17 Score=141.42 Aligned_cols=84 Identities=21% Similarity=0.460 Sum_probs=79.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|++.| |+..|+|+.|+|+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFID-KQTNLSKCFGFVSYDNPVSAQAAIQSM--NGFQIGMKRLKVQ 100 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEEC-SSSCSEEEEEEEECSSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-CCCCCcCccEEEEECCHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 3469999999999999999999999999999999998 788999999999999999999999999 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9987753
No 58
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=7.2e-18 Score=140.90 Aligned_cols=83 Identities=24% Similarity=0.441 Sum_probs=75.9
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||||||.++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|++.+ +..++|+.|+|
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~tg~~kg~afV~f~~~~~A~~Ai~~~---~~~l~g~~l~V 98 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD-PLTKRSRGFGFVTFMDQAGVDKVLAQS---RHELDSKTIDP 98 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCC-TTTCCCTTCEEEEESSHHHHHHHHHSS---CEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEEC-CCCCCcCcEEEEEECCHHHHHHHHHHC---CCcCCCEEEEE
Confidence 34569999999999999999999999999999999998 889999999999999999999999876 59999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
+++.++.
T Consensus 99 ~~a~~~~ 105 (109)
T 2rs2_A 99 KVAFPRR 105 (109)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9998774
No 59
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.73 E-value=5.4e-18 Score=143.35 Aligned_cols=79 Identities=25% Similarity=0.486 Sum_probs=73.9
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++|||||||+++++++|+++|++||.|.+|+|++| + +.+||||||+|.+.++|.+|++.| ||..|+||.|+|+++
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d-~--~~~kg~afV~f~~~~~A~~Ai~~l--~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E--NGSKGYGFVHFETQEAAERAIEKM--NGMLLNDRKVFVGRF 80 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-T--TEEEEEEEEEESCHHHHHHHHHHH--TTCEETTEECEEEES
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeec-C--CCCCceEEEEECCHHHHHHHHHHc--CCCEECCEEEEEEEC
Confidence 48999999999999999999999999999999987 3 457999999999999999999999 999999999999999
Q ss_pred cccc
Q 003749 232 DGRR 235 (798)
Q Consensus 232 ~~~~ 235 (798)
+++.
T Consensus 81 ~~~~ 84 (115)
T 4f25_A 81 KSRK 84 (115)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7764
No 60
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=8.2e-18 Score=137.53 Aligned_cols=84 Identities=25% Similarity=0.535 Sum_probs=79.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.+|++.++ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 80 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKD-SDTGRSKGYGFITFSDSECARRALEQL--NGFELAGRPMRVG 80 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECC-SSSCCCCSEEEEEESCHHHHHHHHHHH--TTCCSSSSCCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeec-CCCCceeeEEEEEECCHHHHHHHHHHh--CCCeeCCcEEEEE
Confidence 3469999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 81 ~a~~~~~ 87 (95)
T 2dnz_A 81 HVTERLD 87 (95)
T ss_dssp ESSCCCC
T ss_pred EcccccC
Confidence 9988753
No 61
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.8e-18 Score=136.85 Aligned_cols=82 Identities=15% Similarity=0.271 Sum_probs=74.0
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||||||+++++++|+++|++||.|.+|+++++ ||||||+|++.++|.+|++.+..++..++||+|+|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 34569999999999999999999999999999999876 89999999999999999998733578899999999
Q ss_pred ecccccchh
Q 003749 229 KLDDGRRLK 237 (798)
Q Consensus 229 ~~~~~~~~~ 237 (798)
++++++...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999887654
No 62
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=7.1e-18 Score=140.13 Aligned_cols=83 Identities=24% Similarity=0.368 Sum_probs=78.8
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.+|++..+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPRE-PHTKAPRGFAFVRFHDRRDAQDAEAAM--DGAELDGRELRVQ 88 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBC-SSSCSBCSCEEEEESSSSHHHHHHHHH--SSCCBTTBCCEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCCCCCeEEEEEECCHHHHHHHHHHc--CCCEECCcEEEEE
Confidence 4569999999999999999999999999999999998 888999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++++..
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 998764
No 63
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=8.2e-18 Score=138.65 Aligned_cols=84 Identities=27% Similarity=0.424 Sum_probs=79.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|++..+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 83 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPID-SLTKKPKGFAFVTFMFPEHAVKAYAEV--DGQVFQGRMLHVL 83 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCC-TTTCCCCSEEEEEESSHHHHHHHHHHT--TTEESSSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEec-CCCCCcCeEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 4569999999999999999999999999999999998 779999999999999999999999999 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9988753
No 64
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=141.78 Aligned_cols=82 Identities=18% Similarity=0.365 Sum_probs=77.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.+|+++.+ +.+|+++|||||+|.+.++|.+|+ .| ||..|+|+.|+|+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISD-RNSRRSKGIAYVEFCEIQSVPLAI-GL--TGQRLLGVPIIVQ 99 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCS-CCSSSCCCCEEEEESCGGGHHHHH-HH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEec-CCCCccCcEEEEEeCcHHHHHHHH-Hc--CCCEeCCeEEEEE
Confidence 4469999999999999999999999999999999998 888999999999999999999999 88 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 100 ~a~~~~ 105 (114)
T 2cq4_A 100 ASQAEK 105 (114)
T ss_dssp EHHHHH
T ss_pred ecCCCc
Confidence 987764
No 65
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.4e-18 Score=140.33 Aligned_cols=83 Identities=25% Similarity=0.461 Sum_probs=78.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|++..+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKD-RVTGQHQGYGFVEFLSEEDADYAIKIM--DMIKLYGKPIRVN 90 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBC-SSSCSBCSCEEEEESSHHHHHHHHHHS--SSCBCSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCcCCcEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEE
Confidence 3459999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 91 ~a~~~~ 96 (105)
T 1x5u_A 91 KASAHN 96 (105)
T ss_dssp ETTTTS
T ss_pred ECCCCC
Confidence 998764
No 66
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=7.1e-18 Score=138.82 Aligned_cols=78 Identities=31% Similarity=0.473 Sum_probs=75.0
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceE--------EEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKN--------VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g 223 (798)
++|||||||.++++++|+++|++||.|.+ ++++.+ +.+|+++|||||+|.+.++|.+|++.| ||..++|
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~-~~~g~~~G~afV~f~~~~~a~~Ai~~l--~g~~~~g 90 (99)
T 2la6_A 14 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTD-RETGKLKGEATVSFDDPPSAKAAIDWF--DGKEFSG 90 (99)
T ss_dssp SEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEEC-TTTCSEEEEEEEEBSSHHHHHHHHHHH--TTCBSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEec-CCCCCeeeEEEEEECCHHHHHHHHHHh--CCCEeCC
Confidence 49999999999999999999999999999 999998 889999999999999999999999999 9999999
Q ss_pred eeeeeeccc
Q 003749 224 RVLTVKLDD 232 (798)
Q Consensus 224 ~~~~v~~~~ 232 (798)
+.|+|++++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 67
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.73 E-value=1.1e-17 Score=142.25 Aligned_cols=85 Identities=22% Similarity=0.359 Sum_probs=79.8
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||+|||.++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V 89 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD-MATGKSKGYGFVSFFNKWDAENAIQQM--GGQWLGGRQIRT 89 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHT--TTCEETTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEc-CCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 34569999999999999999999999999999999998 779999999999999999999999999 999999999999
Q ss_pred ecccccch
Q 003749 229 KLDDGRRL 236 (798)
Q Consensus 229 ~~~~~~~~ 236 (798)
++++++..
T Consensus 90 ~~a~~~~~ 97 (115)
T 2dgo_A 90 NWATRKPP 97 (115)
T ss_dssp EESSCCCC
T ss_pred EEccCCCC
Confidence 99987753
No 68
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=1.2e-15 Score=154.01 Aligned_cols=253 Identities=8% Similarity=0.064 Sum_probs=170.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003749 338 IHAYAVGRDMEEALSCVRKMKEEGIEMS--LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTR 415 (798)
Q Consensus 338 l~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 415 (798)
++.....|++..|+..+++.... .|+ ......+..+|...|++++|+..++.. ..++..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCC
Confidence 34455678888888887765443 233 245566778888888888888766541 2345667777777888888
Q ss_pred ChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003749 416 NMERAEALVRDMEEEGI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVS 494 (798)
Q Consensus 416 ~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 494 (798)
+.++|++.++++...+. +.+...+..+..+|...|++++|++.|++ ..+...+..++.+|.+.|++++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88888888888877653 33456666777788888888888888776 246677777778888888888888888
Q ss_pred HHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 003749 495 KVMKSSGIKHNMKTY---SMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER 571 (798)
Q Consensus 495 ~~m~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 571 (798)
+++.+.. |+.... ..++..+...|++++|+.+|+++.+..+. +...++.+..++.+.|++++|+..|+++....
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8877653 332211 12233344457777777777777766433 66677777777777777777777777776664
Q ss_pred CCCCcccHHHHHHHHHhcCCHHH-HHHHHHHHHHcC
Q 003749 572 HRPTSRTFMPIIHGFARAGEMKR-ALEIFDMMRRSG 606 (798)
Q Consensus 572 ~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~ 606 (798)
.. +..++..++..+...|+.++ +.++++++.+..
T Consensus 231 p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 33 55566666767777776654 456667666653
No 69
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=137.82 Aligned_cols=83 Identities=25% Similarity=0.532 Sum_probs=78.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|++ + |+..++|+.|+|+
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~-~--~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD-AEKQRPRGFGFITFEDEQSVDQAVN-M--HFHDIMGKKVEVK 84 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCC-TTTCSCCSEEEEEESSHHHHHHHHH-H--CCCBSSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCCCCCceEEEEECCHHHHHHHHH-h--CCCEECCeEEEEE
Confidence 3469999999999999999999999999999999998 8899999999999999999999998 8 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9987753
No 70
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=1e-17 Score=144.29 Aligned_cols=83 Identities=24% Similarity=0.443 Sum_probs=78.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|++++| +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|+
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~~G~afV~F~~~~~A~~Ai~~l--ng~~i~g~~l~V~ 121 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD-QQSRRSRGFAFVYFENVDDAKEAKERA--NGMELDGRRIRVD 121 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECC-SSSSCCCCEEEEEESCHHHHHHHHHHH--TTCCSSSSCCEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 3469999999999999999999999999999999998 889999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 997763
No 71
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=141.19 Aligned_cols=84 Identities=25% Similarity=0.381 Sum_probs=79.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccC------Ceeecc
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD------GVEFHG 223 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~------~~~~~g 223 (798)
+.++|||+|||+++++++|+++|++||.|.+|++++| +.+|+++|||||+|.+.++|.+|+..+ | +..|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~~--~~~~~~~~~~~~g 90 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLH-PDTEHSKGCAFAQFMTQEAAQKCLAAA--SLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC-SSSCCBCSEEEEEESSHHHHHHHHHHH--CTTTTTCCEESSS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCCCccEEEEEECCHHHHHHHHHHh--ccccccCCcEEcC
Confidence 4569999999999999999999999999999999999 889999999999999999999999999 9 999999
Q ss_pred eeeeeecccccch
Q 003749 224 RVLTVKLDDGRRL 236 (798)
Q Consensus 224 ~~~~v~~~~~~~~ 236 (798)
+.|+|++++++..
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999987753
No 72
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.72 E-value=6.5e-18 Score=140.74 Aligned_cols=82 Identities=24% Similarity=0.524 Sum_probs=78.0
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||.++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|++.+ ||..++|+.|+|++
T Consensus 26 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~Ai~~l--~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD-SETGRSKGYGFITFSDSECAKKALEQL--NGFELAGRPMKVGH 102 (108)
T ss_dssp CEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEE-TTTTEEEEEEEEEESCHHHHHHHHHHH--TTCCSSSSCCEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEc-CCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEEE
Confidence 359999999999999999999999999999999998 789999999999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98763
No 73
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.72 E-value=1.2e-17 Score=134.78 Aligned_cols=82 Identities=20% Similarity=0.364 Sum_probs=77.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|+ .+ ||..++|+.|+|+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~a~-~~--~g~~~~g~~l~V~ 80 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCD-KFSGHPKGFAYIEFSDKESVRTSL-AL--DESLFRGRQIKVI 80 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEES-CSSSSCCEEEEEEESSTHHHHHHG-GG--TTCEETTEECEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEec-CCCCCcceEEEEEECCHHHHHHHH-hc--CCCEECCcEEEEE
Confidence 3469999999999999999999999999999999998 789999999999999999999999 88 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 81 ~a~~~~ 86 (89)
T 3ucg_A 81 PKRTNR 86 (89)
T ss_dssp ETTTTS
T ss_pred EccCCC
Confidence 997753
No 74
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.1e-18 Score=138.78 Aligned_cols=80 Identities=15% Similarity=0.293 Sum_probs=74.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||+++|+++|+++|++||.|.+|++++| +. |+++|||||+|.+.++|.+|+. + ||..++|+.|.|.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d-~~-g~~rG~aFV~F~~~e~a~~Ai~-~--~~~~~~gr~l~V~ 84 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT-LH-KAFKGSIFVVFDSIESAKKFVE-T--PGQKYKETDLLIL 84 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECC-CT-TSCCCEEEEEESSHHHHHHHHT-S--SCCCCTTTTCEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEEC-CC-CCCccEEEEEECCHHHHHHHHH-c--CCCEECCEEEEEE
Confidence 3469999999999999999999999999999999998 55 9999999999999999999998 7 9999999999999
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
++...
T Consensus 85 ~~~~~ 89 (103)
T 1s79_A 85 FKDDY 89 (103)
T ss_dssp EHHHH
T ss_pred EchHH
Confidence 87553
No 75
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.4e-18 Score=137.48 Aligned_cols=83 Identities=24% Similarity=0.433 Sum_probs=78.8
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEE-EEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNV-ILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
+.++|||+|||.++++++|+++|++||.|.++ +++++ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v 80 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRD-PDTGNSKGYAFINFASFDASDAAIEAM--NGQYLCNRPITV 80 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCC-TTTCSCCSEEEEEBSSHHHHHHHHHTT--TTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEc-CCCCCcCeEEEEEECCHHHHHHHHHHc--CCCEECCEEEEE
Confidence 45699999999999999999999999999999 99998 789999999999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
++++++.
T Consensus 81 ~~a~~~~ 87 (96)
T 1x5t_A 81 SYAFKKD 87 (96)
T ss_dssp EESCCCC
T ss_pred EEecccC
Confidence 9998775
No 76
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.1e-18 Score=140.41 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=78.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
++++|||||||.++++++|+++|++||.|.+|++..+ +.+|+++|||||+|.+.++|.+|+..| ||..++|+.|+|+
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 98 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLD-RRTGYLKGYTLVEYETYKEAQAAMEGL--NGQDLMGQPISVD 98 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTSSEEEEEEEEESCHHHHHHHHHHH--TTCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEec-CCCCceeeEEEEEECCHHHHHHHHHHh--cCCEECCcEEEEE
Confidence 4469999999999999999999999999999999998 889999999999999999999999999 9999999999999
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
+++++
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 99765
No 77
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=1.3e-17 Score=140.35 Aligned_cols=83 Identities=22% Similarity=0.301 Sum_probs=78.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||.++++++|+++|++||.|.+|++..+ +.+|+++|||||+|.+.++|.+|+..| ||..++|+.|+|+
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD-RRTGFSKGYALVEYETHKQALAAKEAL--NGAEIMGQTIQVD 101 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBC-TTTSSBCSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHc--CCCEECCcEEEEE
Confidence 4569999999999999999999999999999999998 889999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 997764
No 78
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.71 E-value=8.6e-18 Score=130.35 Aligned_cols=75 Identities=25% Similarity=0.478 Sum_probs=71.5
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
+|||||||+++++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|++ + ||..++|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~a~~-~--~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFD-KTTNRHRGFGFVTFESEDIVEKVCE-I--HFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBC-SSSTTSCBEEEEECSCHHHHHHHHS-S--SCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHH-C--CCCEECCEEEEEEeC
Confidence 5899999999999999999999999999999998 7799999999999999999999997 7 999999999999875
No 79
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=135.47 Aligned_cols=80 Identities=29% Similarity=0.576 Sum_probs=75.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|++..+ +. |+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~-~~-g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKD-RE-GKPKSFGFVCFKHPESVSYAIALL--NGIRLYGRPINVS 90 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TT-SCEEEEEEEEESSTHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEEC-CC-CCCceEEEEEECCHHHHHHHHHHh--CCCEECCCEEEEE
Confidence 4469999999999999999999999999999999998 44 999999999999999999999999 9999999999999
Q ss_pred cccc
Q 003749 230 LDDG 233 (798)
Q Consensus 230 ~~~~ 233 (798)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9865
No 80
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7e-18 Score=136.68 Aligned_cols=77 Identities=12% Similarity=0.233 Sum_probs=70.7
Q ss_pred cccceeecCCCc-cCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCC--eeecceee
Q 003749 150 QEGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG--VEFHGRVL 226 (798)
Q Consensus 150 ~~~~~~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~--~~~~g~~~ 226 (798)
+.++|||||||+ ++++++|+++|++||.|.+|+|+++ +|||||+|++.++|.+|++.| |+ ..|+||+|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l--~~~~~~~~Gr~l 84 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-------INEAFIEMATTEDAQAAVDYY--TTTPALVFGKPV 84 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-------SSCEEEEESSHHHHHHHHHHH--HHSCCEETTEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHH--cCCCceECCcEE
Confidence 456999999999 9999999999999999999999987 799999999999999999998 64 56999999
Q ss_pred eeecccccc
Q 003749 227 TVKLDDGRR 235 (798)
Q Consensus 227 ~v~~~~~~~ 235 (798)
+|++++...
T Consensus 85 ~V~~a~~~~ 93 (102)
T 1x4d_A 85 RVHLSQKYK 93 (102)
T ss_dssp EEEEECCCT
T ss_pred EEEECCCCC
Confidence 999997543
No 81
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=140.32 Aligned_cols=83 Identities=31% Similarity=0.641 Sum_probs=78.2
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||||||.++++++|+++|++||.|.+|++..+ + +|+++|||||+|.+.++|.+|++.| ||..++|+.|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~-~g~~~g~afV~F~~~~~A~~Ai~~l--~g~~~~g~~l~V 80 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-R-TSKSRGFAFITFENPADAKNAAKDM--NGKSLHGKAIKV 80 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECS-T-TTTCCCEEEEECSSHHHHHHHHHHC--SSCBCSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC-C-CCCcccEEEEEECCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 34569999999999999999999999999999999998 5 8999999999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
++++++.
T Consensus 81 ~~a~~~~ 87 (116)
T 2fy1_A 81 EQAKKPS 87 (116)
T ss_dssp EECCCSS
T ss_pred EECCCCC
Confidence 9998765
No 82
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.8e-18 Score=135.04 Aligned_cols=81 Identities=17% Similarity=0.324 Sum_probs=76.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||+++++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.+++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILD-KTTNKCKGYGFVDFDSPSAAQKAVTAL--KASGVQAQMAKQS 80 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECC-SSSCSCCSEEEEEESCHHHHHHHHHHH--HHHTCCEESCCSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHh--cCCeEeeEEEeec
Confidence 4569999999999999999999999999999999998 889999999999999999999999999 9999999999998
Q ss_pred cccc
Q 003749 230 LDDG 233 (798)
Q Consensus 230 ~~~~ 233 (798)
+.++
T Consensus 81 ~~~s 84 (85)
T 1x4e_A 81 GPSS 84 (85)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 83
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-17 Score=138.67 Aligned_cols=83 Identities=30% Similarity=0.576 Sum_probs=78.8
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|+++.+ +.+|+++|||||+|.+.++|.+|++.| |+..|+|+.|+|+
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKD-RETQRSRGFGFVTFENIDDAKDAMMAM--NGKSVDGRQIRVD 87 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCC-SSSCSCCSEEEEECSSHHHHHHHHHHH--TTCCTTSCCCEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCCCcccEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEE
Confidence 4569999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 998765
No 84
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=139.01 Aligned_cols=80 Identities=28% Similarity=0.483 Sum_probs=74.5
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||.++++++|+++|++||.|.+|++.++ + ++++|||||+|.+.++|.+|++.| ||..++|+.|+|++
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~--~~~kg~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~ 103 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-E--RGSKGFGFVTFENSADADRAREKL--HGTVVEGRKIEVNN 103 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCB-T--TBCTTEEEEECCCSHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEEC-C--CCCceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEEE
Confidence 359999999999999999999999999999999987 3 458999999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
++++.
T Consensus 104 a~~~~ 108 (109)
T 2err_A 104 ATARV 108 (109)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 98763
No 85
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-17 Score=137.22 Aligned_cols=83 Identities=27% Similarity=0.476 Sum_probs=77.5
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCC---CCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNN---FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
+.++|||+|||+++++++|+++|++||.|.+|++..+ +. ||+++|||||+|.+.++|.+|+..| ||..|+|+.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~gt~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l 80 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKK-KNKAGVLLSMGFGFVEYKKPEQAQKALKQL--QGHTVDGHKL 80 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEE-ECTTCCEEEEEEEEEEESSHHHHHHHHHHS--TTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCCCcCcccEEEEEECCHHHHHHHHHHh--CCCeeCCeEE
Confidence 4569999999999999999999999999999999988 44 6699999999999999999999999 9999999999
Q ss_pred eeecccccc
Q 003749 227 TVKLDDGRR 235 (798)
Q Consensus 227 ~v~~~~~~~ 235 (798)
+|++++++.
T Consensus 81 ~V~~a~~~~ 89 (98)
T 2cpf_A 81 EVRISERAT 89 (98)
T ss_dssp EEECSSCSS
T ss_pred EEEEccCCC
Confidence 999998775
No 86
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=2.6e-17 Score=131.90 Aligned_cols=79 Identities=25% Similarity=0.514 Sum_probs=73.2
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||||||+++++++|+++|++||.|.+++++++ +.+|+++|||||+|.+.++|.+|++. ++..++|+.|+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~---~~~~~~g~~i~v 84 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMD-PNTGRSRGFGFILFKDAASVEKVLDQ---KEHRLDGRVIDP 84 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEEC-TTTCCEEEEEEEEESSTHHHHHHHHS---SCEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeec-CCCCccccEEEEEECCHHHHHHHHHh---CCCEECCEEEEE
Confidence 34569999999999999999999999999999999998 88999999999999999999999964 688999999999
Q ss_pred ecc
Q 003749 229 KLD 231 (798)
Q Consensus 229 ~~~ 231 (798)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 87
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-17 Score=138.61 Aligned_cols=80 Identities=18% Similarity=0.323 Sum_probs=73.6
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccC--Ceeecceee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD--GVEFHGRVL 226 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~--~~~~~g~~~ 226 (798)
.+.++|||||||+++++++|+++|++||.|.+|+++++ ||||||+|++.++|.+|++.+ + +..|+||+|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-------kG~AFVeF~~~e~A~~Ai~~l--~~~~~~l~Gr~l 99 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-------KNQAFIEMNTEEAANTMVNYY--TSVTPVLRGQPI 99 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-------GTEEEEECSCHHHHHHHHHHH--HHHCCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-------CCEEEEEECCHHHHHHHHHHh--ccCCceECCeEE
Confidence 45679999999999999999999999999999999987 899999999999999999988 6 568999999
Q ss_pred eeecccccchh
Q 003749 227 TVKLDDGRRLK 237 (798)
Q Consensus 227 ~v~~~~~~~~~ 237 (798)
+|++++++...
T Consensus 100 ~V~~a~~k~~~ 110 (119)
T 2ad9_A 100 YIQFSNHKELK 110 (119)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCCCCC
Confidence 99999887654
No 88
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=137.78 Aligned_cols=81 Identities=25% Similarity=0.405 Sum_probs=76.1
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCC-CCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNF-EKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
.++|||+|||+++++++|+++|++|| |.+|+++++ +.+ |+++|||||+|.+.++|.+|+ .| |+..|+|+.|+|+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~-~~~~g~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPRE-PSNPERLKGFGYAEFEDLDSLLSAL-SL--NEESLGNKRIRVD 89 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBC-SSCTTSBCSCEEEEESSHHHHHHHH-GG--GTCEETTEECEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecC-CCCCCCcCeEEEEEECCHHHHHHHH-hc--CCCEeCCcEEEEE
Confidence 46999999999999999999999999 999999998 666 999999999999999999999 88 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9988753
No 89
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=137.01 Aligned_cols=83 Identities=14% Similarity=0.360 Sum_probs=78.5
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcce-EEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee---
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIK-NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV--- 225 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~--- 225 (798)
+.++|||||||+++++++|+++|++||.|. +++++++ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~~~~ 84 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRN-RLTGIPAGYCFVEFADLATAEKCLHKI--NGKPLPGATPAK 84 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEEC-SSSCCEEEEEEEECSCHHHHHHHHHTT--TTSEESSCSSCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeec-CCCCCcCCEEEEEeCCHHHHHHHHHHH--cCCccCCCCcce
Confidence 456999999999999999999999999999 9999998 889999999999999999999999999 999999999
Q ss_pred -eeeecccccc
Q 003749 226 -LTVKLDDGRR 235 (798)
Q Consensus 226 -~~v~~~~~~~ 235 (798)
|+|+++++..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999997764
No 90
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.71 E-value=1.5e-17 Score=139.11 Aligned_cols=84 Identities=21% Similarity=0.348 Sum_probs=78.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeee---cceee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF---HGRVL 226 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~---~g~~~ 226 (798)
+.++|||||||.++++++|+++|++||.|.+|+++.| +.+|+++|||||+|.+.++|.+|++.| ||..+ .|+.|
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~~~~g~~l 88 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKD-RFTGMHKGCAFLTYCERESALKAQSAL--HEQKTLPGMNRPI 88 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCC-SSSCSCCSEEEEEESSHHHHHHHHHHH--TTTCCCTTCSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHh--cCCcccCCCCceE
Confidence 3459999999999999999999999999999999998 889999999999999999999999999 99988 89999
Q ss_pred eeecccccch
Q 003749 227 TVKLDDGRRL 236 (798)
Q Consensus 227 ~v~~~~~~~~ 236 (798)
+|++++++..
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999987753
No 91
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=130.00 Aligned_cols=76 Identities=24% Similarity=0.473 Sum_probs=72.7
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++|||||||+++++++|+++|++||.|.++++.++ +.+|+++|||||+|.+.++|.+|++.+ + ..++|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~a~~~~--~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD-PLTKRSRGFGFVTFMDQAGVDKVLAQS--R-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECC-CCSSSCSSEEEECCCCTTHHHHHHHTT--T-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecC-CCCCCcCceEEEEEcCHHHHHHHHHhC--C-CccCCEEEEEEec
Confidence 48999999999999999999999999999999998 788999999999999999999999998 7 9999999999876
No 92
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=2.3e-17 Score=136.87 Aligned_cols=82 Identities=28% Similarity=0.471 Sum_probs=76.9
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++|| |.+|+++++ +.+|+++|||||+|.+.++|.+|+ .| ||..|+|+.|+|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~V~ 88 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRD-KDTDKFKGFCYVEFDEVDSLKEAL-TY--DGALLGDRSLRVD 88 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEEC-SSSCSEEEEEEEEESSHHHHHHHG-GG--TTCEETTEECEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeec-CCCCccceEEEEEECCHHHHHHHH-hh--CCCeECCeEEEEE
Confidence 346999999999999999999999997 999999999 889999999999999999999999 78 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9987753
No 93
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.9e-17 Score=134.89 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=73.9
Q ss_pred cceeecCC----CccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCC----hhH----HHHHHH--hcccC
Q 003749 152 GKIFVGNL----PNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDG----PAA----EKSAMK--AVEFD 217 (798)
Q Consensus 152 ~~~~v~nl----~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~----~~~----a~~a~~--~~~~~ 217 (798)
..|||||| ++.+++.+|+++|+.||+|.++.++.| +.||+|+|||||+|.+ ++. |.+|+. .+ |
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~D-p~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~l--n 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFND-PNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHES--S 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEEC-TTTCCEEEEEEEECC------CCHHHHHHHHHHHTTT--T
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhh--c
Confidence 58999999 999999999999999999999999999 9999999999999996 333 788888 56 9
Q ss_pred Ceeecceeeeeecccccch
Q 003749 218 GVEFHGRVLTVKLDDGRRL 236 (798)
Q Consensus 218 ~~~~~g~~~~v~~~~~~~~ 236 (798)
|..|+||.|+|++.+...+
T Consensus 80 g~~I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 80 GCFIMGFKFEVILNKHSIL 98 (136)
T ss_dssp CEEETTEEEEEEECCTTHH
T ss_pred CCeecCcEEEEEECcccHH
Confidence 9999999999999877754
No 94
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.5e-17 Score=139.44 Aligned_cols=85 Identities=26% Similarity=0.418 Sum_probs=79.4
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcce--------EEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIK--------NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE 220 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~ 220 (798)
.+.++|||+|||+++++++|+++|++||.|. .|++..+ +.+|+++|||||+|.+.++|.+|++.| ||..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~ 89 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLD-KETGKPKGDATVSYEDPPTAKAAVEWF--DGKD 89 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBC-TTTCSBCSEEEEEBSSHHHHHHHHHHH--TTCE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEe-CCCCCeeeEEEEEECCHHHHHHHHHHc--CCCc
Confidence 3456999999999999999999999999999 6999998 889999999999999999999999999 9999
Q ss_pred ecceeeeeecccccch
Q 003749 221 FHGRVLTVKLDDGRRL 236 (798)
Q Consensus 221 ~~g~~~~v~~~~~~~~ 236 (798)
|+|+.|+|++++++..
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999987753
No 95
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.70 E-value=2.3e-17 Score=137.62 Aligned_cols=83 Identities=25% Similarity=0.446 Sum_probs=77.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc---eee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG---RVL 226 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g---~~~ 226 (798)
+.++|||||||.++++++|+++|++||.|.+|++..+ + +|+++|||||+|.+.++|.+|++.| ||..+.| +.|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~-~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~gg~~~~l 89 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-P-DGSSKGCAFVKFSSHTEAQAAIHAL--HGSQTMPGASSSL 89 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC-S-SSCEEEEEEEEESSHHHHHHHHHHH--SSCCCCTTCSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-C-CCCcCcEEEEEeCCHHHHHHHHHHH--cCCccCCCCCccE
Confidence 4569999999999999999999999999999999998 4 7999999999999999999999999 9999998 999
Q ss_pred eeecccccch
Q 003749 227 TVKLDDGRRL 236 (798)
Q Consensus 227 ~v~~~~~~~~ 236 (798)
+|++++++..
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999987753
No 96
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2e-17 Score=137.87 Aligned_cols=85 Identities=29% Similarity=0.528 Sum_probs=79.7
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||.++++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYD-RETGKPKGYGFCEYQDQETALSAMRNL--NGREFSGRALRVD 83 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEE-TTTTEEEEEEEEECSCHHHHHHHHHHS--SSBSCSSSCBEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeC-CCCCccceEEEEEECCHHHHHHHHHHh--CCCeeCCcEEEEE
Confidence 3469999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred cccccchh
Q 003749 230 LDDGRRLK 237 (798)
Q Consensus 230 ~~~~~~~~ 237 (798)
+++++...
T Consensus 84 ~a~~~~~~ 91 (104)
T 1p1t_A 84 NAASEKNK 91 (104)
T ss_dssp ETTCTTHH
T ss_pred eCCCccch
Confidence 99887543
No 97
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3e-17 Score=133.83 Aligned_cols=80 Identities=16% Similarity=0.240 Sum_probs=74.4
Q ss_pred cccceeecCCCccCchHHHH----HHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee
Q 003749 150 QEGKIFVGNLPNWIKKHLVM----EFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~ 225 (798)
+.++|||||||+++++++|+ ++|++||.|.+|+++.| +.+ +|||||+|.+.++|.+|++.| ||..++||.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~-~~~---rg~afV~f~~~~~A~~Ai~~l--~g~~~~gr~ 81 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPH-TDY---QLKAVVQMENLQDAIGAVNSL--HRYKIGSKK 81 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSC-CST---TCCEEEEESSHHHHHHHHHHH--TTEEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeC-CCC---CeEEEEEECCHHHHHHHHHHh--CCCEECCeE
Confidence 45699999999999999999 99999999999999988 444 899999999999999999999 999999999
Q ss_pred eeeecccccc
Q 003749 226 LTVKLDDGRR 235 (798)
Q Consensus 226 ~~v~~~~~~~ 235 (798)
|+|++++++.
T Consensus 82 l~V~~a~~~~ 91 (96)
T 2dgx_A 82 ILVSLATGAS 91 (96)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEcCCCC
Confidence 9999998764
No 98
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.70 E-value=1.3e-15 Score=164.29 Aligned_cols=345 Identities=13% Similarity=0.084 Sum_probs=165.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDM---EEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (798)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (798)
+...+.+.|++++|+++|+++.+.| +...+..|...|...|+. ++|+.+|++..+. +...+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4445555566666666666655544 333444455555555555 5555555555532 33444444443333
Q ss_pred cC-----CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 003749 379 MG-----NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEE 453 (798)
Q Consensus 379 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (798)
.| ++++|+.+|++..+.+ +...+..|...|...+...++.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~-------------------------------- 126 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNV-------------------------------- 126 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTC--------------------------------
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCH--------------------------------
Confidence 33 4455555555555543 2224444444444433322211
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHH----HHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 003749 454 KCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKAL----EVSKVMKSSGIKHNMKTYSMLINGFLKLK---DWANVF 526 (798)
Q Consensus 454 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~----~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~ 526 (798)
++.+.+.+..+.| +...+..|...|...+.++++. .+++..... +...+..|..+|.+.| +.++|+
T Consensus 127 ~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~ 199 (452)
T 3e4b_A 127 NAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELL 199 (452)
T ss_dssp CHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHH
Confidence 2233333333222 2334444445555544333222 222222221 1224455555555555 566666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcC----CChHHHHHHHHHHHHCCCCCCcccHHHHHHH-H--HhcCCHHHHHHHH
Q 003749 527 AVFEDVMRDGLKPDVVLYNNIIRAFCGM----GNMDRAIHIVKEMQKERHRPTSRTFMPIIHG-F--ARAGEMKRALEIF 599 (798)
Q Consensus 527 ~~~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~ 599 (798)
..|++..+.|.. +...+..|..+|... +++++|+.+|++.. .+ +...+..|... | ...+++++|+..|
T Consensus 200 ~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 200 KQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp HHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 666666555443 444444555555433 46666666666665 22 34445555544 2 3466777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHH
Q 003749 600 DMMRRSGCIPTVHTFNALILGLVEKR-----QMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS----LGDTGKAFEYFT 670 (798)
Q Consensus 600 ~~~~~~~~~p~~~~~~~li~~~~~~~-----~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~~A~~~~~ 670 (798)
++..+.| +...+..|...|. .| ++++|+..|++.. . -+...+..|...|.. ..+.++|..+|+
T Consensus 275 ~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 275 DNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 7766654 4555555655555 33 7777777777665 2 345566666666655 336777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCC
Q 003749 671 KLRNEGLELDVFTYEALLKACCK----SGRMQSALAVTKEMSAQK 711 (798)
Q Consensus 671 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 711 (798)
+..+.|. ......|..+|.. ..+.++|...+++..+.|
T Consensus 347 ~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 347 TAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 7776653 2344555555553 346777777777777665
No 99
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.1e-17 Score=138.79 Aligned_cols=82 Identities=30% Similarity=0.449 Sum_probs=76.8
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||+|||+++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|++.+ |+ .|+|+.|+|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~Ai~~~--~~-~~~g~~l~V 90 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITD-RQTGKSRGYGFVTMADRAAAERACKDP--NP-IIDGRKANV 90 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCC-SSSCCCCSEEEEEESSHHHHHHHHTCS--SC-EETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEc-CCCCccceEEEEEECCHHHHHHHHHhC--CC-cCCCEEEEE
Confidence 34569999999999999999999999999999999998 889999999999999999999999988 88 899999999
Q ss_pred eccccc
Q 003749 229 KLDDGR 234 (798)
Q Consensus 229 ~~~~~~ 234 (798)
++++..
T Consensus 91 ~~a~~~ 96 (116)
T 2cqd_A 91 NLAYLG 96 (116)
T ss_dssp EESTTT
T ss_pred EEcccC
Confidence 999654
No 100
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.70 E-value=5.9e-17 Score=139.78 Aligned_cols=84 Identities=17% Similarity=0.291 Sum_probs=78.6
Q ss_pred cccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
..+.++|||||||.++++++|+++|++||.|.+|++..+ +.+|+++|||||+|.+.++|.+|+ .+ ||..|+|+.|+
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~ 108 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCD-KFSGHPKGYAYIEFAERNSVDAAV-AM--DETVFRGRTIK 108 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEE-CTTSSCEEEEEEEESSHHHHHHHH-TT--TTCEETTEECE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCCcccEEEEEECCHHHHHHHH-hc--CCCeECCeEEE
Confidence 345679999999999999999999999999999999998 789999999999999999999999 78 99999999999
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|+++++..
T Consensus 109 V~~a~~~~ 116 (124)
T 2jwn_A 109 VLPKRTNM 116 (124)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99998764
No 101
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=2.9e-17 Score=136.35 Aligned_cols=83 Identities=24% Similarity=0.390 Sum_probs=77.6
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||+|||+++++++|+++|++||.|.+|++..+ +|+++|||||+|.+.++|.+|++.| ||..++|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V 87 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME---GGRSKGFGFVCFSSPEEATKAVTEM--NGRIVATKPLYV 87 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC---SSSEEEEEEEEESSHHHHHHHHHHH--TTCBSSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCCcCEEEEEEECCHHHHHHHHHHh--CCCEeCCcEEEE
Confidence 35569999999999999999999999999999999986 7999999999999999999999999 999999999999
Q ss_pred ecccccch
Q 003749 229 KLDDGRRL 236 (798)
Q Consensus 229 ~~~~~~~~ 236 (798)
++++++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2d9p_A 88 ALAQRKEE 95 (103)
T ss_dssp EECSSCCC
T ss_pred EEeccccc
Confidence 99987753
No 102
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-17 Score=136.66 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=76.7
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||+|||+++++++|+++|++||.|.+++++.+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|++
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY-NEKGMPTGEAMVAFESRDEATAAVIDL--NDRPIGSRKVKLVL 91 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEE-CSSSCEEEEEEEEESCHHHHHHHHHHT--TTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEE-CCCCCeeeEEEEEECCHHHHHHHHHHh--CCCeeCCeEEEEEE
Confidence 358999999999999999999999999999988888 789999999999999999999999999 99999999999999
Q ss_pred cccc
Q 003749 231 DDGR 234 (798)
Q Consensus 231 ~~~~ 234 (798)
++.+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8765
No 103
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.4e-17 Score=134.07 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=71.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||+++++++|+++|++||.|.+|+++++ ||||||+|++.++|.+|++.|..++..++|++|+|+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 4569999999999999999999999999999999876 899999999999999999988223455999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9987754
No 104
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=133.11 Aligned_cols=82 Identities=23% Similarity=0.433 Sum_probs=75.9
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCC-CcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEK-NVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~-~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
.++|||+|||.++++++|+++|++||.|.++++..+ +.++. ++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~-~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 80 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVE-RMHPHLSKGYAYVEFENPDEAEKALKHM--DGGQIDGQEITAT 80 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEE-TTEEEEECSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeC-CCCCCCCCcEEEEEEecHHHHHHHHHHc--CCCeECCeEEEEE
Confidence 469999999999999999999999999999999998 55555 8999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++.+..
T Consensus 81 ~a~~~~ 86 (88)
T 4a8x_A 81 AVLAPW 86 (88)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987653
No 105
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.3e-17 Score=137.65 Aligned_cols=84 Identities=24% Similarity=0.424 Sum_probs=76.7
Q ss_pred ccccceeecCCCccCchHHHH---HHhcccCcceEEEEecCCCCCC---CCcceEEEEeCChhHHHHHHHhcccCCeeec
Q 003749 149 RQEGKIFVGNLPNWIKKHLVM---EFFRQFGPIKNVILIKGYNNFE---KNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH 222 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~---~~f~~~g~v~~~~~~~~~~~~~---~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~ 222 (798)
.+.++|||||||+++++++|+ ++|++||.|.+|++.++ +.+| +++|||||+|.+.++|.+|++.| ||..|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~-~~~~~~~~~~G~afV~f~~~~~A~~Ai~~l--ng~~~~ 89 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNS-TSYAGSQGPSASAYVTYIRSEDALRAIQCV--NNVVVD 89 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECC-SSCCSSSCCCEEEEEEESSHHHHHHHHHHH--TTEEET
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecC-CCcCccCCCCeEEEEEECcHHHHHHHHHHh--CCCEEC
Confidence 345699999999999999999 99999999999999988 5543 56699999999999999999999 999999
Q ss_pred ceeeeeecccccc
Q 003749 223 GRVLTVKLDDGRR 235 (798)
Q Consensus 223 g~~~~v~~~~~~~ 235 (798)
|+.|+|++++++.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999998875
No 106
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.70 E-value=8.2e-18 Score=135.85 Aligned_cols=80 Identities=34% Similarity=0.529 Sum_probs=73.7
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++|||||||.++++++|+++|++||.|.++++.++ +.+|+++|||||+|.+.+ |.+|+..| ||..++|+.|+|+++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~-a~~a~~~l--~g~~~~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYD-RETKKPKGFGFVEMQEES-VSEAIAKL--DNTDFMGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCC-SSSCCCCEEEEEEECTTH-HHHHHHTS--CSSCCSSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEc-CCCCCcceEEEEEECCHH-HHHHHHHh--CCCEECCeEEEEEEc
Confidence 48999999999999999999999999999999998 888999999999999999 99999999 999999999999999
Q ss_pred cccc
Q 003749 232 DGRR 235 (798)
Q Consensus 232 ~~~~ 235 (798)
.+..
T Consensus 78 ~~~~ 81 (90)
T 2ki2_A 78 NPKK 81 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 7764
No 107
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=4.1e-17 Score=180.38 Aligned_cols=151 Identities=15% Similarity=0.178 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003749 610 TVHTFNALILGLVEKRQMEKAIEILDEMTL---AGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEA 686 (798)
Q Consensus 610 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 686 (798)
-..+||+||++|++.|++++|.++|++|.+ .|+.||.+|||+||++|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356777777777777777777777766653 36677777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHH
Q 003749 687 LLKACCKSGRM-QSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD------VHTYTSFIN 759 (798)
Q Consensus 687 l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd------~~~~~~l~~ 759 (798)
||.+|++.|+. ++|.++|++|.+.|+.||..+|++++.+..+. .+++.++++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 77777777763 66777777777777777777777777655443 444555555 3355554 334445555
Q ss_pred HHHHcC
Q 003749 760 ACSKAG 765 (798)
Q Consensus 760 ~~~~~g 765 (798)
.|.+.|
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555554
No 108
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.4e-17 Score=137.20 Aligned_cols=84 Identities=25% Similarity=0.448 Sum_probs=78.2
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||+|||+++++++|+++|++||.|.+|+++.+ +.+|+++|||||+|.+.++|.+|+.. |+..|+|+.|+|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~---~~~~~~g~~l~V 100 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRD-PASKRSRGFGFVTFSSMAEVDAAMAA---RPHSIDGRVVEP 100 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECC-TTTSSCCSEEEEECSSHHHHHHHHTS---CSEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC-CCCCCcCceEEEEeCCHHHHHHHHHh---CCcEECCEEEEE
Confidence 34569999999999999999999999999999999998 88999999999999999999999974 899999999999
Q ss_pred ecccccch
Q 003749 229 KLDDGRRL 236 (798)
Q Consensus 229 ~~~~~~~~ 236 (798)
++++++..
T Consensus 101 ~~a~~~~~ 108 (116)
T 1x4b_A 101 KRAVAREE 108 (116)
T ss_dssp ECCSSCCC
T ss_pred EECCCCcc
Confidence 99988753
No 109
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=1.8e-17 Score=135.49 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=75.5
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||+|||+++++++|+++|++||.|.+++++.+ +.+|+++|||||+|.+.++|.+|++.| |+..|+||.|+|++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY-NEKGMPTGEAMVAFESRDEATAAVIDL--NDRPIGSRKVKLSG 91 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEE-CTTSCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEe-CCCCCEeeEEEEEECCHHHHHHHHHHh--CCCeECCcEEEEEe
Confidence 469999999999999999999999999999999988 789999999999999999999999999 99999999999998
Q ss_pred ccc
Q 003749 231 DDG 233 (798)
Q Consensus 231 ~~~ 233 (798)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 864
No 110
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=1.8e-16 Score=136.60 Aligned_cols=83 Identities=24% Similarity=0.364 Sum_probs=77.8
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
...++|||+||+.++++++|+++|++||.|.+|++..+ + +|+++|||||+|.+.++|.+|++.| ||..++|+.|+|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~-~-~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V 108 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYD-R-SGRSLGTADVHFERRADALKAMKQY--KGVPLDGRPMDI 108 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECC-S-SSSCCSEEEEEESSHHHHHHHHHHH--TTEESSSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEC-C-CCCEeeEEEEEECCHHHHHHHHHHc--CCCEECCcEEEE
Confidence 34569999999999999999999999999999999998 5 8999999999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
+++.+..
T Consensus 109 ~~a~~~~ 115 (124)
T 2kt5_A 109 QLVASQI 115 (124)
T ss_dssp EEECCTT
T ss_pred EEeCCCC
Confidence 9997654
No 111
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.5e-17 Score=137.16 Aligned_cols=82 Identities=18% Similarity=0.374 Sum_probs=77.7
Q ss_pred cccceeecCCCccCchHHHHHHhcc-cCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCee-ecceeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQ-FGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE-FHGRVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~-~~g~~~~ 227 (798)
+.++|||||||+++++++|+++|++ ||.|.+|+++.+ + +|+++|||||+|.+.++|.+|++.| ||.. ++|+.|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~~g~~l~ 83 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-Q-TGVSKGYGFVKFTDELEQKRALTEC--QGAVGLGSKPVR 83 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEEC-T-TCCEEEEEEEEESCHHHHHHHHHHT--TTCCSSSSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEEC-C-CCCccceEEEEECCHHHHHHHHHHc--cCCcccCCEeEE
Confidence 4569999999999999999999999 999999999998 6 9999999999999999999999999 9999 9999999
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|++++++.
T Consensus 84 v~~a~~~~ 91 (104)
T 2dhg_A 84 LSVAIPKA 91 (104)
T ss_dssp CCBCCCCC
T ss_pred EEEccCCC
Confidence 99997765
No 112
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=2.3e-15 Score=162.37 Aligned_cols=270 Identities=9% Similarity=0.017 Sum_probs=147.6
Q ss_pred cHHHHHHHHHhhcC-CCHhhHHHHHHHHHHcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----ChHHH
Q 003749 280 NWQAVVSAFERIKK-PSRREFGLMVNYYARRGDM---HRARQTFENMRARGIEPTLHVYTNLIHAYAVGR-----DMEEA 350 (798)
Q Consensus 280 ~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-----~~~~A 350 (798)
.+...+..|.+.-. -+...+..|...|...|+. ++|+.+|++..+. +...+..|..++...+ ++++|
T Consensus 18 ~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A 93 (452)
T 3e4b_A 18 DTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEA 93 (452)
T ss_dssp HHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHH
Confidence 45555666654321 2445566777788888888 9999999999865 6667777877666655 78999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 003749 351 LSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEA---ADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDM 427 (798)
Q Consensus 351 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 427 (798)
+..|++..+.| +...+..|...|...+..++ +.+.+.+....+ +...+..+...|...+.++++.+....+
T Consensus 94 ~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 94 ESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 99999999976 33478888888888766544 444454444443 4567777778888777665555544433
Q ss_pred HHcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHC
Q 003749 428 EEEGIDAPIDIYHMMMDGYTIIG---NEEKCLIVFERLKECGFSPSIISYGCLINLYTKI----GKVSKALEVSKVMKSS 500 (798)
Q Consensus 428 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~ 500 (798)
.+.-...+...+..|..+|...| +.++|+.+|++..+.|.. +...+..|..+|... +++++|++.|++.. .
T Consensus 168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~ 245 (452)
T 3e4b_A 168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P 245 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C
Confidence 33222233446777777777777 777777777777766533 444445555555443 56677777776665 3
Q ss_pred CCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-----ChHHHHHHHHHHH
Q 003749 501 GIKHNMKTYSMLING-F--LKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMG-----NMDRAIHIVKEMQ 568 (798)
Q Consensus 501 ~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~ 568 (798)
| +...+..|... | ...+++++|+..|++..+.| +...+..|..+|. .| ++++|+.+|++..
T Consensus 246 g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 246 G---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp G---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 2 33444444444 2 34566666666666666543 4455555555554 23 5555555555544
No 113
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=134.62 Aligned_cols=81 Identities=27% Similarity=0.523 Sum_probs=74.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|++..+ ++++|||||+|.+.++|.+|++.| |+..|+|+.|+|+
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR----RGGPPFAFVEFEDPRDAEDAVYGR--DGYDYDGYRLRVE 94 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS----SSSSCCEEEEESCHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC----CCCCcEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEE
Confidence 3469999999999999999999999999999999654 568999999999999999999999 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4a_A 95 FPRSGRG 101 (109)
T ss_dssp CCCCCCC
T ss_pred EcccCCC
Confidence 9987753
No 114
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.7e-17 Score=133.59 Aligned_cols=80 Identities=21% Similarity=0.336 Sum_probs=71.4
Q ss_pred ccccceeecCCCcc-CchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 149 RQEGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 149 ~~~~~~~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
.+.++|||||||++ +++++|+++|++||.|.+|+++++ ||||||+|++.++|.+|++.|..++..|+||+|+
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 45679999999998 999999999999999999999865 8999999999999999999883345669999999
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|++++.+.
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997664
No 115
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.69 E-value=5.2e-17 Score=136.04 Aligned_cols=80 Identities=26% Similarity=0.423 Sum_probs=75.7
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
...++|||+|||+++++++|+++|++||.|.+|+++.+ + +|+++|||||+|.+.++|.+|++.| ||..++|+.|+|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V 102 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYD-R-SGRSLGTADVHFERKADALKAMKQY--NGVPLDGRPMNI 102 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC-T-TSCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-C-CCCcceEEEEEECCHHHHHHHHHHh--CCCEeCCcEEEE
Confidence 34569999999999999999999999999999999998 5 9999999999999999999999999 999999999999
Q ss_pred eccc
Q 003749 229 KLDD 232 (798)
Q Consensus 229 ~~~~ 232 (798)
+++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 116
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.8e-17 Score=134.33 Aligned_cols=84 Identities=24% Similarity=0.486 Sum_probs=78.1
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||+|||+++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|+.. |+..|+|+.|+|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~a~~~---~~~~~~g~~l~V 89 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKD-KTTNQSRGFGFVKFKDPNCVGTVLAS---RPHTLDGRNIDP 89 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEEC-SSSCCEEEEEEEEESSTTHHHHHHHH---CSEEETTEEEBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCCCcceEEEEEECCHHHHHHHHHh---CCCeECCEEEEE
Confidence 34569999999999999999999999999999999998 88999999999999999999999975 899999999999
Q ss_pred ecccccch
Q 003749 229 KLDDGRRL 236 (798)
Q Consensus 229 ~~~~~~~~ 236 (798)
++++++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 2dh8_A 90 KPCTPRGM 97 (105)
T ss_dssp CCSCCSSC
T ss_pred EEccCCCC
Confidence 99987753
No 117
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=132.88 Aligned_cols=81 Identities=23% Similarity=0.360 Sum_probs=75.8
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|+++.+ +.+|+++|||||+|.+.++|.+|+. ++..++|+.|+|+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~----~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKD-LKTGHSKGFGFVRFTEYETQVKVMS----QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEEC-SSSCSEEEEEEEEESSHHHHHHHHH----SCEEETTEEEEEE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEec-CCCCCccceEEEEECCHHHHHHHHH----cCCeeCCeEEEEE
Confidence 3469999999999999999999999999999999998 8899999999999999999999997 5789999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++.++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cqg_A 89 LPNSKQ 94 (103)
T ss_dssp CCCTTC
T ss_pred ecCCCC
Confidence 998774
No 118
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.68 E-value=5.1e-17 Score=131.85 Aligned_cols=81 Identities=23% Similarity=0.416 Sum_probs=75.9
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.++++.++ +|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~---~g~~~g~afV~f~~~~~a~~a~~~l--~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME---NGKSKGCGVVKFESPEVAERACRMM--NGMKLSGREIDVR 81 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES---SSCEEEEEEEEESSHHHHHHHHHHH--TTCCBTTBCCCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc---CCCcceEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 3469999999999999999999999999999999874 7899999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 998764
No 119
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1e-16 Score=133.04 Aligned_cols=81 Identities=25% Similarity=0.448 Sum_probs=74.9
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|+++++ +. .++|||||+|.+.++|.+|++.| ||..|+|+.|+|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~--~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE-HT--SNDPYCFVEFYEHRDAAAALAAM--NGRKILGKEVKVN 88 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECC-CC--SSCCEEEEEESSHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEec-CC--CCCCEEEEEECCHHHHHHHHHHh--CCCCcCCCeEEEE
Confidence 4569999999999999999999999999999999987 33 36899999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 998765
No 120
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=132.40 Aligned_cols=82 Identities=27% Similarity=0.483 Sum_probs=75.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|+++.+ + +.++|||||+|.+.++|.+|+..| ||..|+|+.|+|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~--~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-E--RGSKGFGFVTFENSADADRAREKL--HGTVVEGRKIEVN 88 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECC-T--TTTCCEEEEEESCHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-C--CCCcEEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 4469999999999999999999999999999999987 3 338999999999999999999999 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cq3_A 89 NATARVM 95 (103)
T ss_dssp ECCSSCC
T ss_pred EcccCCC
Confidence 9988753
No 121
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=9.8e-17 Score=136.15 Aligned_cols=82 Identities=22% Similarity=0.335 Sum_probs=76.5
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
+..++|||+|||+++++++|+++|++||.|.+|++..+ + +|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 88 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILED-K-DGKSRGIGTVTFEQSIEAVQAISMF--NGQLLFDRPMHV 88 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC-T-TCSEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-C-CCCeeeEEEEEECCHHHHHHHHHHh--CCCEeCCCEEEE
Confidence 34569999999999999999999999999999999998 4 5999999999999999999999999 999999999999
Q ss_pred eccccc
Q 003749 229 KLDDGR 234 (798)
Q Consensus 229 ~~~~~~ 234 (798)
++++..
T Consensus 89 ~~a~~~ 94 (114)
T 2do0_A 89 KMDERA 94 (114)
T ss_dssp EECSCC
T ss_pred EEcccC
Confidence 998654
No 122
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=6.3e-17 Score=134.35 Aligned_cols=80 Identities=28% Similarity=0.416 Sum_probs=73.8
Q ss_pred ccceeecCCCccC------chHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecce
Q 003749 151 EGKIFVGNLPNWI------KKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (798)
Q Consensus 151 ~~~~~v~nl~~~~------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~ 224 (798)
.++|||||||+.+ ++++|+++|++||.|.+|++. +.+|+++|||||+|.+.++|.+|+..| ||..++|+
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~---~~~g~~~G~afV~f~~~~~A~~Ai~~l--~g~~~~g~ 89 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP---EEDGKTKGYIFLEYASPAHAVDAVKNA--DGYKLDKQ 89 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC---CBTTBSCCEEEEEECSSSHHHHHHHHC--SSEECSTT
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee---CCCCCeeeEEEEEECCHHHHHHHHHHh--CCcccCCC
Confidence 4599999999999 789999999999999999988 358999999999999999999999999 99999999
Q ss_pred -eeeeecccccc
Q 003749 225 -VLTVKLDDGRR 235 (798)
Q Consensus 225 -~~~v~~~~~~~ 235 (798)
+|+|+++....
T Consensus 90 ~~l~V~~a~~~~ 101 (105)
T 2nlw_A 90 HTFRVNLFTDFD 101 (105)
T ss_dssp CEEEEECSCCCC
T ss_pred ceEEEEEcchHh
Confidence 99999987653
No 123
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=5.4e-17 Score=138.07 Aligned_cols=79 Identities=14% Similarity=0.333 Sum_probs=72.3
Q ss_pred ccceeecCCCccCchHHHH----HHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 151 EGKIFVGNLPNWIKKHLVM----EFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
+++||||||++++++++|+ ++|++||.|.+|.+.+ +|++||||||+|.+.++|.+|+..| ||..|.|++|
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~----~~~~rG~aFV~F~~~~~A~~Ai~~l--ng~~l~gr~l 102 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL----SDDNSGKAYIVFATQESAQAFVEAF--QGYPFQGNPL 102 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC----CCSSCCCEEEEESSHHHHHHHHHHS--TTCCCTTSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc----CCCcCCEEEEEECCHHHHHHHHHHH--CCCEeCCCEE
Confidence 4589999999999999876 6999999999988743 5889999999999999999999999 9999999999
Q ss_pred eeecccccc
Q 003749 227 TVKLDDGRR 235 (798)
Q Consensus 227 ~v~~~~~~~ 235 (798)
+|++++.+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998774
No 124
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.68 E-value=5.4e-17 Score=141.13 Aligned_cols=84 Identities=24% Similarity=0.404 Sum_probs=79.2
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||+|||+++++++|+++|++||.|.+|+++.+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~~g~~~G~afV~F~~~~~A~~Ai~~l--~g~~i~g~~l~V 121 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD-RYTKESRGFAFVRFHDKRDAEDAMDAM--DGAVLDGRELRV 121 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCC-SSSSSCCSCCEEECSCHHHHHHHHTTT--TTCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEE
Confidence 34569999999999999999999999999999999998 789999999999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
+++++..
T Consensus 122 ~~a~~~~ 128 (135)
T 2lea_A 122 QMARYGR 128 (135)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998764
No 125
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.68 E-value=2.4e-16 Score=139.69 Aligned_cols=79 Identities=24% Similarity=0.461 Sum_probs=74.7
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||.++++++|+++|++||.|.+++++++ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|+
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD-YETEKHRGFAFVEFELAEDAAAAIDNM--NESELFGRTIRVN 138 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCC-TTTCCCCSEEEEEESCHHHHHHHHHHS--TEEEETTEEEEEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeec-CCCCCcCcEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 3469999999999999999999999999999999998 889999999999999999999999999 9999999999998
Q ss_pred cc
Q 003749 230 LD 231 (798)
Q Consensus 230 ~~ 231 (798)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 126
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=6.2e-17 Score=133.81 Aligned_cols=75 Identities=23% Similarity=0.430 Sum_probs=70.8
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||.++++++|+++|++||.|.++++.+. +|||||+|.+.++|.+|+..| ||..++|+.|+|++
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~-------~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE-------KGCCFIKYDTHEQAAVCIVAL--ANFPFQGRNLRTGW 97 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT-------TTEEEEECSSHHHHHHHHHHH--TTCEETTEECCCCB
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC-------CCEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEEe
Confidence 469999999999999999999999999999999854 899999999999999999999 99999999999999
Q ss_pred cccc
Q 003749 231 DDGR 234 (798)
Q Consensus 231 ~~~~ 234 (798)
++++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9764
No 127
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.67 E-value=6.3e-17 Score=140.06 Aligned_cols=83 Identities=20% Similarity=0.295 Sum_probs=78.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|+++.+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|+
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLD-RRTGYLKGYTLVEYETYKEAQAAMEGL--NGQDLMGQPISVD 97 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC-TTTSSBCSCEEEEESSHHHHHHHHHHH--TTCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHh--CCCeeCCeEEEEE
Confidence 3469999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 98 ~a~~~~ 103 (126)
T 3ex7_B 98 WCFVRG 103 (126)
T ss_dssp ESEESS
T ss_pred EecCCC
Confidence 997654
No 128
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.2e-14 Score=144.52 Aligned_cols=226 Identities=11% Similarity=0.119 Sum_probs=163.1
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CC----HHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE--MS----LVTY 369 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--~~----~~~~ 369 (798)
...|..+...|...|++++|+.+|+++.+.. .+..++..+..+|...|++++|+..|+++++.... ++ ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456778888888888999999888888876 67788888888888888888888888888764211 11 5778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 003749 370 SIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII 449 (798)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 449 (798)
..++..|.+.|++++|+..|+++..... + ...+.+.|++++|.+.++++.... +.+..++..+...|...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHR--T-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC--C-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCc--h-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 8888888888888888888888877532 2 234566677788888887777753 23455667777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003749 450 GNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVF 529 (798)
Q Consensus 450 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 529 (798)
|++++|+..|+++.+.... +..+|..+..+|...|++++|+..|+++.+.. +.+...+..+...|.+.|++++|...|
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7777777777777765322 56667777777777777777777777776653 334566666777777777777777777
Q ss_pred HHHHHc
Q 003749 530 EDVMRD 535 (798)
Q Consensus 530 ~~~~~~ 535 (798)
++..+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666554
No 129
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=6.2e-17 Score=178.98 Aligned_cols=119 Identities=15% Similarity=0.281 Sum_probs=88.2
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003749 576 SRTFMPIIHGFARAGEMKRALEIFDMMRR---SGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTI 652 (798)
Q Consensus 576 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~l 652 (798)
..+|++||++|++.|++++|.++|.+|.+ .|+.||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||++|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45677777777777777777777766653 467777777777777777777777777777777777777777777777
Q ss_pred HHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003749 653 MHGYASLGD-TGKAFEYFTKLRNEGLELDVFTYEALLKACCKS 694 (798)
Q Consensus 653 i~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 694 (798)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 777777776 366777777777777777777777777655444
No 130
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.3e-17 Score=136.07 Aligned_cols=83 Identities=22% Similarity=0.409 Sum_probs=77.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCc-ceEEEEe-cCCCCCCCCcceEEEEeCChhHHHHHHHhcccC--Ceeeccee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGP-IKNVILI-KGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD--GVEFHGRV 225 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~-~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~--~~~~~g~~ 225 (798)
+.++|||||||+++++++|+++|++||. |.+++++ .+ +.+|+++|||||+|.+.++|.+|++.| | +..++|+.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~~g~~~~~g~~ 83 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA-ADKMKNRGFAFVEYESHRAAAMARRKL--MPGRIQLWGHQ 83 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSS-CTTTTTCCEEEEEESSHHHHHHHHTTT--TTCCSCBTTBC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccC-CCCCCcCcEEEEEecCHHHHHHHHHHh--hCCCceecCCe
Confidence 4569999999999999999999999998 9999998 56 889999999999999999999999988 7 79999999
Q ss_pred eeeecccccc
Q 003749 226 LTVKLDDGRR 235 (798)
Q Consensus 226 ~~v~~~~~~~ 235 (798)
|+|++++++.
T Consensus 84 l~V~~a~~~~ 93 (109)
T 2dis_A 84 IAVDWAEPEI 93 (109)
T ss_dssp CEEEESCSSC
T ss_pred EEEEEcCCCC
Confidence 9999998775
No 131
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1e-16 Score=132.34 Aligned_cols=78 Identities=22% Similarity=0.281 Sum_probs=72.2
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
..+|||+|||+++++++|+++|++| .|.+|+|+.| +. |+++|||||+|.+.++|.+|+ .+ |+..|+||.|.|..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d-~~-g~~~G~afV~F~~~~~a~~Al-~~--~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKD-HV-GRNNGNGLVKFLSPQDTFEAL-KR--NRMLMIQRYVEVSP 89 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCC-TT-CCCCSEEEEECSSHHHHHHHH-HT--TTEEETTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEEC-CC-CCCCeEEEEEECCHHHHHHHH-hc--CCCeECCeEEEEEE
Confidence 4599999999999999999999999 8999999998 54 999999999999999999999 57 99999999999988
Q ss_pred cccc
Q 003749 231 DDGR 234 (798)
Q Consensus 231 ~~~~ 234 (798)
+..+
T Consensus 90 a~~~ 93 (109)
T 2dnn_A 90 ATER 93 (109)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 8554
No 132
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=134.22 Aligned_cols=85 Identities=29% Similarity=0.437 Sum_probs=77.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||+|||.++++++|+++|++||.|.+|++.++.+.+|+++|||||+|.+.++|.+|+..| .|+..|+|+.|+|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l-~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL-CHSTHLYGRRLVLE 92 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH-HTCCBSSSCBCEEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh-ccCCeECCCEEEEE
Confidence 44699999999999999999999999999999999874568999999999999999999999865 15999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 93 ~a~~~~ 98 (107)
T 2cph_A 93 WADSEV 98 (107)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 998775
No 133
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.67 E-value=4.8e-17 Score=127.99 Aligned_cols=73 Identities=29% Similarity=0.461 Sum_probs=67.9
Q ss_pred cceeecCCCccC------chHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecce-
Q 003749 152 GKIFVGNLPNWI------KKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR- 224 (798)
Q Consensus 152 ~~~~v~nl~~~~------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~- 224 (798)
++|||||||.++ ++++|+++|++||.|.++++. +.+|+++|||||+|.+.++|.+|++.| ||..++|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~---~~~g~~~g~afV~f~~~~~A~~Ai~~l--ng~~~~g~~ 76 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP---EEDGKTKGYIFLEYASPAHAVDAVKNA--DGYKLDKQH 76 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC---CBTTBCCCEEEEEESSHHHHHHHHTTS--SSCCCSSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec---CCCCcEeEEEEEEECCHHHHHHHHHHh--cCcccCCce
Confidence 589999999999 679999999999999999987 358999999999999999999999999 99999999
Q ss_pred eeeee
Q 003749 225 VLTVK 229 (798)
Q Consensus 225 ~~~v~ 229 (798)
+|+|.
T Consensus 77 ~l~V~ 81 (81)
T 2krb_A 77 TFRVN 81 (81)
T ss_dssp CCCCC
T ss_pred eEEeC
Confidence 88873
No 134
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=131.74 Aligned_cols=80 Identities=28% Similarity=0.521 Sum_probs=74.1
Q ss_pred hcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 147 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
..++.++|||||||+++++++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.| ||..++|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-------kg~afV~f~~~~~a~~a~~~l--~g~~~~g~~l 81 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-------KGFGFIRLETRTLAEIAKVEL--DNMPLRGKQL 81 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-------TTEEEEECSSSHHHHHHHHHH--TTCCBTTBCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-------CCEEEEEECCHHHHHHHHHHh--CCCEeCCceE
Confidence 3345679999999999999999999999999999999876 899999999999999999999 9999999999
Q ss_pred eeecccccc
Q 003749 227 TVKLDDGRR 235 (798)
Q Consensus 227 ~v~~~~~~~ 235 (798)
+|++++++.
T Consensus 82 ~v~~a~~~~ 90 (99)
T 2cpj_A 82 RVRFACHSA 90 (99)
T ss_dssp EEEESSCCS
T ss_pred EEEEcCCCC
Confidence 999998764
No 135
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=5.3e-17 Score=125.94 Aligned_cols=75 Identities=25% Similarity=0.380 Sum_probs=70.8
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
+|||||||+++++++|+++|++||.|.++++.++ +.+|+++|||||+|.+.++|.+|++. ++..++|+.|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~Ai~~---~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCFITFKEEEPVKKIMEK---KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCS-CCCSSSCCCEEEECSSSHHHHHHHTT---SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCCcCCEEEEEECCHHHHHHHHHh---CCCeECCEEEEEEEC
Confidence 5899999999999999999999999999999998 88899999999999999999999973 789999999999875
No 136
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.67 E-value=9.6e-17 Score=136.12 Aligned_cols=81 Identities=19% Similarity=0.153 Sum_probs=74.8
Q ss_pred cccceeecCCCccCchHHHHHHhcccCc---ceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGP---IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
+.++|||||||+++++++|+++|++||. |.+|+|+.+ +. |+++|||||+|.+.++|.+|++ + |+..|+||.|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~-~~-g~~~G~afV~F~~~~~a~~Al~-~--~g~~~~gr~i 90 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYT-RE-GRQSGEAFVELESEDDVKLALK-K--DRESMGHRYI 90 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEEC-SS-SCEEEEEEEEBSSHHHHHHHGG-G--TTEEETTEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEEC-CC-CCCCeEEEEEECCHHHHHHHHh-c--CCCeECCeEE
Confidence 4568999999999999999999999999 899999998 55 9999999999999999999998 8 9999999999
Q ss_pred eeecccccc
Q 003749 227 TVKLDDGRR 235 (798)
Q Consensus 227 ~v~~~~~~~ 235 (798)
+|.++..+.
T Consensus 91 ~V~~a~~~~ 99 (118)
T 2db1_A 91 EVFKSHRTE 99 (118)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999986553
No 137
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=1e-16 Score=132.57 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=71.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccC-cceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
..++|||||||+++++++|+++|++|| .|..+++..+ +++|||||+|.+.++|.+|++.| ||..++||.|+|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-----~~rGfaFV~F~~~e~A~~Ai~~l--ng~~l~Gr~i~V 99 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-----DFDGTGALEFPSEEILVEALERL--NNIEFRGSVITV 99 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-----SSSCCEEEEESSHHHHHHHHHHT--TTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-----CCCCEEEEEECCHHHHHHHHHHc--CCCEECCeEEEE
Confidence 456999999999999999999999999 9999988643 46999999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
++++.+.
T Consensus 100 ~~a~~~p 106 (111)
T 2jvr_A 100 ERDDNPP 106 (111)
T ss_dssp EESCC--
T ss_pred EECCCCC
Confidence 9997653
No 138
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.67 E-value=1.1e-16 Score=144.12 Aligned_cols=85 Identities=26% Similarity=0.490 Sum_probs=79.9
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||+|||.++++++|+++|++||.|.+|+|+.+ +.+|+++|||||+|.+.++|.+|++.| |+..|+|+.|+|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V 113 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD-KMKKTACGFCFVEYYSRADAENAMRYI--NGTRLDDRIIRT 113 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHT--TTSEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEE
Confidence 34569999999999999999999999999999999998 889999999999999999999999999 999999999999
Q ss_pred ecccccch
Q 003749 229 KLDDGRRL 236 (798)
Q Consensus 229 ~~~~~~~~ 236 (798)
+++++...
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99987653
No 139
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.66 E-value=6e-17 Score=139.49 Aligned_cols=81 Identities=19% Similarity=0.126 Sum_probs=75.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCc---ceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGP---IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
+.++|||||||+++|+++|+++|++||. |.+|+|++| +. |+++|||||+|.+.++|.+|++ + |+..|+||.|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d-~~-g~srG~aFV~F~~~e~a~~Al~-~--~g~~l~gr~i 117 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYT-RE-GRQSGEAFVELGSEDDVKMALK-K--DRESMGHRYI 117 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEEC-SS-SCEEEEEEEECSSHHHHHHHHT-T--TEEESSSSEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEEC-CC-CCCCeEEEEEECCHHHHHHHHh-c--CCCEECCEEE
Confidence 4469999999999999999999999999 899999998 55 9999999999999999999998 8 9999999999
Q ss_pred eeecccccc
Q 003749 227 TVKLDDGRR 235 (798)
Q Consensus 227 ~v~~~~~~~ 235 (798)
+|.++..+.
T Consensus 118 ~V~~a~~~e 126 (136)
T 2hgl_A 118 EVFKSHRTE 126 (136)
T ss_dssp EEEECCHHH
T ss_pred EEEECChHH
Confidence 999986553
No 140
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.1e-17 Score=139.23 Aligned_cols=82 Identities=21% Similarity=0.270 Sum_probs=75.0
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||+++++++|+++|++||.|.++.++.+ +.+|+++|||||+|.+.++|.+|+. + ||..|+||.|+|.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~-~~~g~~~G~afV~F~~~~~a~~Al~-~--~g~~~~gr~i~V~ 99 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAY-GPNGKATGEGFVEFRNEADYKAALC-R--HKQYMGNRFIQVH 99 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEE-CTTSSEEEEEEEEBSSSHHHHHHHT-S--CSBCSTTSCBEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEE-CCCCCCCeEEEEEECCHHHHHHHHH-h--CCCeECCcEEEEE
Confidence 3469999999999999999999999999998766666 6799999999999999999999999 8 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++..+.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 986654
No 141
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-16 Score=131.25 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=73.0
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||+|||+++++++|+++|++||. .+|+|+.| + +|+++|||||+|.+.++|.+|+ .+ |+..|+||.|+|.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d-~-~g~~~G~afV~F~~~~~a~~Al-~~--~~~~~~gr~i~V~ 87 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIG-P-DGRVTGEADVEFATHEDAVAAM-AK--DKANMQHRYVELF 87 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEES-S-SSCEEEEEEEECSSSHHHHHHH-TT--SSCCSSSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEEC-C-CCCEeeEEEEEECCHHHHHHHH-Hh--CCCeECCcEEEEE
Confidence 3469999999999999999999999995 49999998 5 8999999999999999999999 46 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
.+....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 887664
No 142
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.3e-16 Score=134.68 Aligned_cols=81 Identities=16% Similarity=0.196 Sum_probs=75.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcc-eEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPI-KNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v-~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
+.++|||+|||+++++++|+++|++||.| .+|+|+.| + +|+++|||||+|.+.++|.+|++. |+..|+||.|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d-~-~g~~~G~afV~F~~~~~a~~Al~~---~~~~~~gr~i~v 88 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVD-N-NGQGLGQALVQFKNEDDARKSERL---HRKKLNGREAFV 88 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCC-T-TSSCSSCEEEECSSHHHHHHHGGG---CSEEETTEEEEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEEC-C-CCCcceEEEEEECCHHHHHHHHHh---CCCccCCeEEEE
Confidence 44699999999999999999999999999 89999998 5 899999999999999999999863 899999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
.++.++.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997764
No 143
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=3.1e-17 Score=135.64 Aligned_cols=80 Identities=16% Similarity=0.284 Sum_probs=74.6
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||+++++++|+++|++||.|.. .++.+ +.+|+++|||||+|.+.++|.+|++ | ||..++|+.|+|++
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~-~~~g~~~g~afV~f~~~~~a~~A~~-l--~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVD-VRTGTNRKFGYVDFESAEDLEKALE-L--TGLKVFGNEIKLEK 91 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCE-EEEETTTTEEEEEESSHHHHHHHHH-G--GGCCBTTBCCEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEec-CCCCCcCcEEEEEECCHHHHHHHHh-c--CCcEECCcEEEEEE
Confidence 459999999999999999999999999998 66777 7789999999999999999999998 8 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
++++.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 98775
No 144
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.9e-14 Score=141.64 Aligned_cols=223 Identities=16% Similarity=0.167 Sum_probs=131.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC--C----cccHHHH
Q 003749 509 YSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP--T----SRTFMPI 582 (798)
Q Consensus 509 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~~~l 582 (798)
+..+...+...|++++|+.+|+++.+.. .+...+..+..+|...|++++|+..|+++....... + ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444433 233444444444444444444444444443322110 0 2444555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003749 583 IHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDT 662 (798)
Q Consensus 583 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 662 (798)
...|.+.|++++|+..|+++.+.. ++. ..+...|++++|...++++.... ..+...|..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 555555666666666665555532 221 23445566677777777666542 22345666777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 663 GKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (798)
Q Consensus 663 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (798)
++|+..|+++++.... +..++..+..+|.+.|++++|...++++.+.. +.+...|..++.+|.+.|++++|++.+++.
T Consensus 156 ~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7777777777776543 56777777778888888888888888777654 456777788888888888888888888877
Q ss_pred HHc
Q 003749 743 KQE 745 (798)
Q Consensus 743 ~~~ 745 (798)
.+.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 663
No 145
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=127.43 Aligned_cols=79 Identities=18% Similarity=0.272 Sum_probs=74.5
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||+|||+++++++|+++|++| .|.+|+++++ .+|+++|||||+|.+.++|.+|+. + ||..|+||.|+|.
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~--~~g~~~g~afV~f~~~~~a~~A~~-~--~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN--AHGNKTGYIFVDFSNEEEVKQALK-C--NREYMGGRYIEVF 82 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC--TTSCEEEEEEEECSSHHHHHHHHH-S--CSEEETTEEEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC--CCCCCceEEEEEECCHHHHHHHHH-h--CCceeCCcEEEEE
Confidence 34699999999999999999999999 9999999987 679999999999999999999999 8 9999999999999
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
+++++
T Consensus 83 ~a~~~ 87 (91)
T 2dgw_A 83 REKSG 87 (91)
T ss_dssp EESSC
T ss_pred ECCcC
Confidence 99776
No 146
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.3e-16 Score=132.78 Aligned_cols=81 Identities=14% Similarity=0.313 Sum_probs=75.5
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeee--------
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF-------- 221 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~-------- 221 (798)
+.++|||+|||+++++++|+++|++||.|.+++++.+ + +|+++|||||+|.+.++|.+|++.| ||..+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD-S-SGTSRGVGFARMESTEKCEAVIGHF--NGKFIKTPPGVSA 99 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEEC-S-SSCEEEEEEEEESCHHHHHHHHHHH--BTCCCCCCTTSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC-C-CCCcceEEEEEECCHHHHHHHHHHh--CCCEEcCCccccC
Confidence 4469999999999999999999999999999999998 5 8999999999999999999999999 99999
Q ss_pred cceeeeeeccccc
Q 003749 222 HGRVLTVKLDDGR 234 (798)
Q Consensus 222 ~g~~~~v~~~~~~ 234 (798)
.|++|.|.+++++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999998765
No 147
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.65 E-value=1.6e-16 Score=143.77 Aligned_cols=83 Identities=24% Similarity=0.407 Sum_probs=78.8
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||||||+++++++|+++|++||.|.+|++.+| +.+|+++|||||+|.+.++|.+|+..| ||..++|+.|+|.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD-RYTKESRGFAFVRFHDKRDAEDAMDAM--DGAVLDGRELRVQ 145 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCC-SSCTTSCCEEEEEESBHHHHHHHHHHS--TTEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEE
Confidence 3469999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 146 ~a~~~~ 151 (158)
T 2kn4_A 146 MARYGR 151 (158)
T ss_dssp EECCSS
T ss_pred ECCCCC
Confidence 998764
No 148
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.65 E-value=1.2e-16 Score=152.66 Aligned_cols=84 Identities=21% Similarity=0.336 Sum_probs=78.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccC--cceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFG--PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
..++||||||++++++++|+++|++|| .|++|+|++| +.+|++||||||+|.+.++|.+||+.| |++.|+|+.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d-~~tg~skGfaFV~f~~~~~a~~Ai~~l--ng~~~~Gr~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFEN-RANGQSKGFALVGVGSEASSKKLMDLL--PKRELHGQNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEEC-TTTCCEEEEEEEEESCTTHHHHHHTTS--TTSCBTTBCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHc--CCCeECCEEeE
Confidence 345999999999999999999999999 9999999999 889999999999999999999999999 99999999999
Q ss_pred eecccccch
Q 003749 228 VKLDDGRRL 236 (798)
Q Consensus 228 v~~~~~~~~ 236 (798)
|+++++...
T Consensus 144 V~~a~~~~~ 152 (229)
T 3q2s_C 144 VTPVNKQFL 152 (229)
T ss_dssp EEECCHHHH
T ss_pred EEECCCCcc
Confidence 999976643
No 149
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.65 E-value=7.5e-17 Score=134.42 Aligned_cols=82 Identities=13% Similarity=0.104 Sum_probs=75.6
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCc---ceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGP---IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~ 225 (798)
.+.++|||||||+++++++|+++|++||. |.+|+++.| +. |+++|||||+|.+.++|.+|+. + |+..++||.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~-~~-g~~~G~afV~F~~~~~a~~Al~-~--~~~~~~gr~ 83 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLN-RD-GKRRGDALIEMESEQDVQKALE-K--HRMYMGQRY 83 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCC-TT-STTCSEEEEEBSSHHHHHHHHT-T--TTCCSSSSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEEC-CC-CCEeeEEEEEECCHHHHHHHHH-h--CcceeCCeE
Confidence 34569999999999999999999999998 899999998 55 9999999999999999999998 8 999999999
Q ss_pred eeeecccccc
Q 003749 226 LTVKLDDGRR 235 (798)
Q Consensus 226 ~~v~~~~~~~ 235 (798)
|+|.++.++.
T Consensus 84 i~V~~a~~~~ 93 (107)
T 2lmi_A 84 VEVYEINNED 93 (107)
T ss_dssp CCCEECCHHH
T ss_pred EEEEECCHHH
Confidence 9999987654
No 150
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.65 E-value=2.9e-14 Score=148.70 Aligned_cols=248 Identities=8% Similarity=0.037 Sum_probs=203.7
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRD-MEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
...|..+...+...|++++|+..|+++++.. +.+..+|+.+..+|...|+ +++|+..|+++++... -+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 3456677788899999999999999999985 4577889999999999997 9999999999999753 37899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI-IGNEE 453 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~ 453 (798)
+|.+.|++++|+..|+++++.+.. +..+|..+..++.+.|++++|++.|+++++.+ +.+..+|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999998654 88999999999999999999999999999986 4578899999999998 66657
Q ss_pred HH-----HHHHHHHHHCCCCcCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------
Q 003749 454 KC-----LIVFERLKECGFSPSIISYGCLINLYTKIG--KVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLK------ 520 (798)
Q Consensus 454 ~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------ 520 (798)
+| +..|++.++.... +...|+.+..++...| ++++|++.+.++ +. ...+...+..+..+|.+.+
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 5888888876433 6778888888888888 688999988887 33 3456778888888888763
Q ss_pred ---CHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHH
Q 003749 521 ---DWANVFAVFEDV-MRDGLKPDVVLYNNIIRAF 551 (798)
Q Consensus 521 ---~~~~a~~~~~~~-~~~g~~~~~~~~~~li~~~ 551 (798)
.+++|+.+|+++ .+..+. ....|..+...+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l 363 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTI-RKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 258899999888 554332 344565555544
No 151
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.6e-16 Score=127.99 Aligned_cols=77 Identities=22% Similarity=0.405 Sum_probs=72.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec--ceeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH--GRVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~--g~~~~ 227 (798)
+.++|||+|||.++++++|+++|++||.|.+|++..+ +|||||+|.+.++|.+|++.| ||..++ |+.|+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~g~afV~f~~~~~A~~A~~~l--~g~~~~~~g~~l~ 86 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-------DSFAYIQYESLDAAQAACAKM--RGFPLGGPDRRLR 86 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-------SCCEEEEESSHHHHHHHHHHH--TTCBCSSSSCBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-------CCEEEEEECCHHHHHHHHHHH--CCCEeCCCCcEEE
Confidence 3469999999999999999999999999999999865 899999999999999999999 999999 99999
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|++++++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998774
No 152
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.8e-16 Score=129.84 Aligned_cols=81 Identities=19% Similarity=0.305 Sum_probs=73.1
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||+|||+++++++|+++|++||.| +++.+ .+|+++|||||+|.+.++|.+|+..| |+..|+|+.|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~--~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v 85 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN--QNGKSKGYAFIEFASFEDAKEALNSC--NKREIEGRAIRL 85 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC--SSSCBCSEEEEECSSHHHHHHHHHHT--SSEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC--CCCCEeeEEEEEECCHHHHHHHHHHh--CCCEeCCeEEEE
Confidence 345699999999999999999999999987 55554 57999999999999999999999999 999999999999
Q ss_pred ecccccch
Q 003749 229 KLDDGRRL 236 (798)
Q Consensus 229 ~~~~~~~~ 236 (798)
++++++..
T Consensus 86 ~~a~~~~~ 93 (101)
T 2fc9_A 86 ELQGPRGS 93 (101)
T ss_dssp EECSSCCC
T ss_pred EEcCCCCC
Confidence 99988753
No 153
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.65 E-value=2.4e-16 Score=143.12 Aligned_cols=85 Identities=22% Similarity=0.297 Sum_probs=78.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|..|.++.+ +.+|+++|||||+|.+.++|.+|+..| ||..|.|+.|.|.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD-RRTGFSKGYALVEYETHKQALAAKEAL--NGAEIMGQTIQVD 147 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTSSEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEec-CCCCcEeeEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 3468999999999999999999999999999999998 889999999999999999999999999 9999999999999
Q ss_pred cccccchh
Q 003749 230 LDDGRRLK 237 (798)
Q Consensus 230 ~~~~~~~~ 237 (798)
+++++...
T Consensus 148 ~a~~~~~~ 155 (165)
T 1rk8_A 148 WCFVKGPK 155 (165)
T ss_dssp ESEECC--
T ss_pred EecCCCCC
Confidence 99776533
No 154
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=1.8e-14 Score=138.74 Aligned_cols=197 Identities=13% Similarity=0.043 Sum_probs=117.0
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
+...+..+...+.+.|++++|+..|+++++.. +.+...+..+..+|.+.|++++|+..|++.++.. +.+...|..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44556666777777777777777777777664 3456667777777777777777777777777654 235666777777
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 003749 375 GFAKM-----------GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMM 443 (798)
Q Consensus 375 ~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 443 (798)
+|.+. |++++|+..|++..+.+.. +..++..+..+|...|++++|++.|++.++.+ .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 77776 6666666666666665332 45566666666666666666666666666654 4555566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 444 DGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVM 497 (798)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (798)
.+|...|++++|+..|++..+.... +...+..+..++...|++++|+..|++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666554322 4455555555666666666666555544
No 155
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.64 E-value=4e-16 Score=129.72 Aligned_cols=74 Identities=27% Similarity=0.507 Sum_probs=70.2
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||.++++++|+++|++||.|.+|++. +|||||+|.+.++|.+|+..| ||..++|+.|+|++
T Consensus 31 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---------kg~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 31 NTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---------NGFAFVEFEEAESAAKAIEEV--HGKSFANQPLEVVY 99 (108)
T ss_dssp CSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---------TTEEEEECSSHHHHHHHHHHH--TTCEETTEECEEES
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEEE
Confidence 3599999999999999999999999999999987 689999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
++++.
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 98775
No 156
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.4e-16 Score=131.97 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=72.9
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
+..++|||+|||+++++++|+++|++||.|.+|++..+ +|||||+|.+.++|.+|++.| ||..++|+.|+|
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-------~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V 78 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG-------GITAIVEFLEPLEARKAFRHL--AYSKFHHVPLYL 78 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS-------SSCEEEEESCHHHHHHHHHHH--TTCBSSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-------CCEEEEEeCCHHHHHHHHHHh--CCCEECCeEEEE
Confidence 45679999999999999999999999999999998764 899999999999999999999 999999999999
Q ss_pred ecccccch
Q 003749 229 KLDDGRRL 236 (798)
Q Consensus 229 ~~~~~~~~ 236 (798)
++++...+
T Consensus 79 ~~a~~~~~ 86 (111)
T 1whx_A 79 EWAPIGVF 86 (111)
T ss_dssp EEEETTTT
T ss_pred EECCCCcc
Confidence 99976643
No 157
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=2.8e-14 Score=137.42 Aligned_cols=208 Identities=14% Similarity=-0.003 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (798)
+...+..+...+.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|+..|+++.+.+.. +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 44455555556666666666666666655543 224555556666666666666666666665554322 4445555555
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHH
Q 003749 410 AQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSK 489 (798)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 489 (798)
+|.+.+. .. .. .+...|++++|+..|++..+.... +...|..+..+|...|++++
T Consensus 82 ~~~~~~~-------------~~--~~---------~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 82 AYVALYR-------------QA--ED---------RERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDK 136 (217)
T ss_dssp HHHHHHH-------------TC--SS---------HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhh-------------hh--hh---------hcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHH
Confidence 5555400 00 00 000004445555555444443221 34444455555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 003749 490 ALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEM 567 (798)
Q Consensus 490 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 567 (798)
|+..|+++.+.+ .+...+..+..+|...|++++|+..|++..+..+. +...+..+..++...|++++|+..|++.
T Consensus 137 A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 137 AEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555443 34444555555555555555555555555544332 4444555555555555555555555443
No 158
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.1e-16 Score=128.32 Aligned_cols=78 Identities=23% Similarity=0.374 Sum_probs=70.7
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||||||+++++++|+++|++||.|. ++++. ++++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW-----QGPRRRAFLHYPDSAAAQQAVSCL--QGLRLGTDTLRVA 89 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-----ETTTTEEEEECSSHHHHHHHHHHH--TTCCSSSSCCEEE
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-----CCCCcEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 345999999999999999999999999997 66664 456999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998764
No 159
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.64 E-value=2.2e-16 Score=129.55 Aligned_cols=80 Identities=23% Similarity=0.451 Sum_probs=74.3
Q ss_pred cccceeecCCCccCchHHHH----HHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee
Q 003749 150 QEGKIFVGNLPNWIKKHLVM----EFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~ 225 (798)
+.++|||||||.++++++|+ ++|++||.|.+|++.+ +|+++|||||+|.+.++|.+|++.| ||..++|+.
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~----~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~ 80 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR----SLKMRGQAFVIFKEVSSATNALRSM--QGFPFYDKP 80 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH----HHHHTTCEEEEESSHHHHHHHHHHH--TTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc----CCCcCcEEEEEeCCHHHHHHHHHHh--CCCEECCcE
Confidence 45699999999999999999 9999999999999874 4788999999999999999999999 999999999
Q ss_pred eeeecccccc
Q 003749 226 LTVKLDDGRR 235 (798)
Q Consensus 226 ~~v~~~~~~~ 235 (798)
|+|++++++.
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999998764
No 160
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=1.6e-17 Score=141.13 Aligned_cols=85 Identities=29% Similarity=0.437 Sum_probs=79.4
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceE--------EEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKN--------VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE 220 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~ 220 (798)
.+.++|||||||.++++++|+++|++||.|.+ |++..+ +.+|+++|||||+|.+.++|.+|++.| ||..
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~ 81 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTD-RETGKLKGEATVSFDDPPSAKAAIDWF--DGKE 81 (116)
Confidence 45679999999999999999999999999999 899988 788999999999999999999999999 9999
Q ss_pred ecceeeeeecccccch
Q 003749 221 FHGRVLTVKLDDGRRL 236 (798)
Q Consensus 221 ~~g~~~~v~~~~~~~~ 236 (798)
++|+.|+|++++++..
T Consensus 82 ~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 82 FSGNPIKVSFATRRAD 97 (116)
Confidence 9999999999987753
No 161
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.3e-16 Score=129.13 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=74.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++|+ .++++.+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTD-RETGSSKGFGFVDFNSEEDAKAAKEAM--EDGEIDGNKVTLD 87 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEEC-SSSCSEEEEEEEECSSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEE
Confidence 446999999999999999999999874 6778887 788999999999999999999999999 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9988754
No 162
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.64 E-value=5.8e-16 Score=126.14 Aligned_cols=74 Identities=23% Similarity=0.517 Sum_probs=69.2
Q ss_pred ccceeecCCCc-cCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 151 EGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 151 ~~~~~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
.++|||||||+ ++++++|+++|++||.|.++++. +|||||+|.+.++|.+|+..+ ||..++|+.|+|+
T Consensus 22 ~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 22 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---------NAFGFIQFDNPQSVRDAIEXE--SQEMNFGKKLILE 90 (97)
T ss_dssp TCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---------SSEEEEEESSHHHHHHHHHHH--TTSEETTEECEEE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---------CCEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 35999999998 99999999999999999999883 789999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 997763
No 163
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=4.8e-13 Score=134.15 Aligned_cols=224 Identities=13% Similarity=0.031 Sum_probs=156.1
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV----GRDMEEALSCVRKMKEEGIEMSLVTYS 370 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~ 370 (798)
+...+..+...|...|++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45566677777777888888888888877743 55677777777777 788888888888777764 667777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 003749 371 IIVGGFAK----MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERAEALVRDMEEEGIDAPIDIYHMM 442 (798)
Q Consensus 371 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 442 (798)
.+...|.. .+++++|+..|++..+.+ +..++..+..+|.. .+++++|++.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777888888887777663 56677777777777 777777777777777754 45666666
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003749 443 MDGYTI----IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTK----IGKVSKALEVSKVMKSSGIKHNMKTYSMLIN 514 (798)
Q Consensus 443 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 514 (798)
...|.. .+++++|+..|++..+.+ +...+..+..+|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666 677777777777766653 45566666666666 677777777777666653 2455555666
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcC
Q 003749 515 GFLK----LKDWANVFAVFEDVMRDG 536 (798)
Q Consensus 515 ~~~~----~~~~~~a~~~~~~~~~~g 536 (798)
+|.+ .+++++|+..|++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666 666666666666665543
No 164
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.63 E-value=4.2e-16 Score=132.35 Aligned_cols=79 Identities=23% Similarity=0.463 Sum_probs=73.9
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
+++|||||||+++++++|+++|++||.|.+|++..+ ++++|||||+|.+.++|.+|+..| ||..++|+.|+|.+
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~----~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT----PETRGTAYVVYEDIFDAKNAVDHL--SGFNVSNRYLVVLY 81 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS----TTTTTCEEEEESSHHHHHHHHHHH--TTCBSSSCBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCCcEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEEE
Confidence 459999999999999999999999999999999876 566999999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
++++.
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 98764
No 165
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.3e-16 Score=129.03 Aligned_cols=81 Identities=17% Similarity=0.245 Sum_probs=73.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceE-EEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKN-VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
..++|||||||+++++++|+++|++||.|.+ |+|+.+ .+|+++|||||+|.+.++|.+|+.. |+..++||.|+|
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~--~~g~~~G~afV~F~~~~~a~~A~~~---~~~~~~gr~i~v 88 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD--FQGRSTGEAFVQFASQEIAEKALKK---HKERIGHRYIEI 88 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC--SSSCBCSEEEEEESSHHHHHHHHTT---TTCCSSSSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC--CCCCcceEEEEEECCHHHHHHHHHh---CcchhCCcEEEE
Confidence 3469999999999999999999999999997 888876 6899999999999999999999974 899999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
..+....
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 8886554
No 166
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.4e-16 Score=129.17 Aligned_cols=79 Identities=18% Similarity=0.398 Sum_probs=74.3
Q ss_pred cccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
....++|||||||.++++++|+++|++||.|.+|++..+ +|||||+|.+.++|.+|+..| ||..++|+.|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-------~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~ 92 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-------KGYSFVRFSTHESAAHAIVSV--NGTTIEGHVVK 92 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHH--TTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-------CCEEEEEECCHHHHHHHHHHc--CCCEECCcEEE
Confidence 345679999999999999999999999999999999987 899999999999999999999 99999999999
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|.+++++.
T Consensus 93 v~~a~~~~ 100 (109)
T 1x4g_A 93 CYWGKESP 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99998875
No 167
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=7.7e-13 Score=132.68 Aligned_cols=224 Identities=12% Similarity=-0.040 Sum_probs=169.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----MGNAEAADHWFEEAKERHATLNAIIYG 405 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 405 (798)
+..++..+...|...|++++|+..|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +..++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56677778888888888888888888888743 56778888888888 888888888888887764 677777
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 003749 406 NIIYAQCQ----TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI----IGNEEKCLIVFERLKECGFSPSIISYGCL 477 (798)
Q Consensus 406 ~l~~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 477 (798)
.+..+|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|+.+|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 78888888 888888888888887764 56777778888877 788888888888877764 56667777
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 478 INLYTK----IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK----LKDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549 (798)
Q Consensus 478 i~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 549 (798)
..+|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777 778888888888777653 45666677777777 777777777777777653 2556666777
Q ss_pred HHHc----CCChHHHHHHHHHHHHCC
Q 003749 550 AFCG----MGNMDRAIHIVKEMQKER 571 (798)
Q Consensus 550 ~~~~----~g~~~~A~~~~~~~~~~~ 571 (798)
+|.+ .+++++|+..|++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7776 677777777777766654
No 168
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2e-16 Score=134.41 Aligned_cols=83 Identities=14% Similarity=0.310 Sum_probs=73.5
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||+++++++|+++|++||.|..+.+..+ ..+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFR-MMTGRMRGQAFITFPNKEIAWQALHLV--NGYKLYGKILVIE 100 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEE-EECSSSCSEEEEECSSHHHHHHHHHHS--TTCBCSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEE-cCCCccceEEEEEECCHHHHHHHHHHh--CCCEeCCcEEEEE
Confidence 3469999999999999999999999999965544333 337889999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 101 ~a~~~~ 106 (115)
T 2cpx_A 101 FGKNKK 106 (115)
T ss_dssp ECCCCS
T ss_pred EccCCC
Confidence 998775
No 169
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.6e-16 Score=127.55 Aligned_cols=76 Identities=16% Similarity=0.312 Sum_probs=69.4
Q ss_pred cccceee--cCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeee-----c
Q 003749 150 QEGKIFV--GNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF-----H 222 (798)
Q Consensus 150 ~~~~~~v--~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~-----~ 222 (798)
+..+||| |||++++++++|+++|++||.|.+|.+..+ ||||||+|++.++|.+|++.| ||..+ .
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-------rgfaFV~f~~~~~A~~Ai~~l--nG~~~~~~lg~ 94 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-------KPYSFARYRTTEESKRAYVTL--NGKEVVDDLGQ 94 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-------CSCEEEEESSHHHHHHHHHHT--TTCEEECTTSC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-------CCEEEEEECCHHHHHHHHHHh--CCCEEccccCC
Confidence 4568999 889999999999999999999999988765 899999999999999999999 99998 7
Q ss_pred ceeeeeeccccc
Q 003749 223 GRVLTVKLDDGR 234 (798)
Q Consensus 223 g~~~~v~~~~~~ 234 (798)
|++|.|.+++..
T Consensus 95 g~~l~v~~a~~~ 106 (114)
T 2cq2_A 95 KITLYLNFVEKV 106 (114)
T ss_dssp EEECEEEEESCC
T ss_pred CcEEEEEecccC
Confidence 999999998654
No 170
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=4.4e-16 Score=127.37 Aligned_cols=79 Identities=19% Similarity=0.315 Sum_probs=72.1
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||||||.++++++|+++|++||.|..+ +.+|+++|||||+|.+.++|.+|+..| ||..++|+.|+|
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~------~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 85 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV------SQDGKSKGIAYIEFKSEADAEKNLEEK--QGAEIDGRSVSL 85 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE------EETTEEEEEEEEEESSHHHHHHHHHHT--TEEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe------CCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEE
Confidence 345699999999999999999999999998776 246888999999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
++++++.
T Consensus 86 ~~a~~~~ 92 (96)
T 1fjc_A 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEcCCCC
Confidence 9998775
No 171
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=7.7e-14 Score=139.89 Aligned_cols=246 Identities=11% Similarity=0.034 Sum_probs=160.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM--SLVTYSIIVG 374 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l~~ 374 (798)
..+..+...+...|++++|+..|+++.+.. +.+...+..+..+|...|++++|+..|+++++....+ ...+|..++.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344556677778888888888888888763 3345577777778888888888888888887732111 1334777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (798)
.|.+.|++++|++.|+++.+.... +..++..+..+|...|++++|.+.|++.++.. +.+..+|..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887776433 56677777777888888888888887777653 4456666666633334457777
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHH
Q 003749 455 CLIVFERLKECGFSPSIISYGCLINLYTKIGK---VSKALEVSKVMKSSG-IKHN------MKTYSMLINGFLKLKDWAN 524 (798)
Q Consensus 455 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~~~------~~~~~~ll~~~~~~~~~~~ 524 (798)
|+..|+++.+.... +...+..+..++...|+ +++|...++++.+.. -.++ ...|..+...|.+.|++++
T Consensus 161 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777777765322 45666666677776666 666776666665431 0011 1355556666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHH
Q 003749 525 VFAVFEDVMRDGLKPDVVLYNNI 547 (798)
Q Consensus 525 a~~~~~~~~~~g~~~~~~~~~~l 547 (798)
|...|+++.+..+. +...+..+
T Consensus 240 A~~~~~~al~~~p~-~~~a~~~l 261 (272)
T 3u4t_A 240 ADAAWKNILALDPT-NKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHhcCcc-HHHHHHHh
Confidence 66666666665433 44444333
No 172
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=126.99 Aligned_cols=76 Identities=21% Similarity=0.308 Sum_probs=71.4
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc-----ee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG-----RV 225 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g-----~~ 225 (798)
.++|||+|||+++++++|+++|++||.|.+|+|+.+ |||||+|.+.++|.+|++.| ||..|+| +.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--------GTGVVEFVRKEDMTYAVRKL--DNTKFRSHEGETAY 84 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--------TEEEEEESSHHHHHHHHHHS--SSEEEECTTSCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--------CEEEEEECCHHHHHHHHHHH--CcCCccCCcCcceE
Confidence 459999999999999999999999999999999875 89999999999999999999 9999999 99
Q ss_pred eeeecccccch
Q 003749 226 LTVKLDDGRRL 236 (798)
Q Consensus 226 ~~v~~~~~~~~ 236 (798)
|+|++++++..
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 99999987653
No 173
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.62 E-value=3.8e-16 Score=131.86 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=71.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcce--EEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIK--NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~--~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
+.++|||||||+++++++|+++|++| .|. +|+|+.| +. |+++|||||+|.+.++|.+|++. ++..|+||.|+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d-~~-GrsrGfaFV~F~~~e~A~~Al~~---~~~~l~gR~I~ 114 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVD-PE-GKITGEAFVQFASQELAEKALGK---HKERIGHRYIE 114 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCC-SS-SSSCSEEEEEESSTTHHHHHHTT---TTCCBTTBCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEEC-CC-CCCceEEEEEECCHHHHHHHHHH---CCCEECCEEEE
Confidence 45689999999999999999999999 566 8999998 55 99999999999999999999974 67999999999
Q ss_pred eeccccc
Q 003749 228 VKLDDGR 234 (798)
Q Consensus 228 v~~~~~~ 234 (798)
|..+..+
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9887554
No 174
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=8.1e-14 Score=145.37 Aligned_cols=229 Identities=8% Similarity=0.078 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 472 ISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKD-WANVFAVFEDVMRDGLKPDVVLYNNIIRA 550 (798)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 550 (798)
..|..+..++.+.|++++|+..++++++.+ +.+...|+.+..+|...|+ +++|+..|+++++.... +...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 445555666666666666666666666543 2345556666666666664 66666666666665444 55556666666
Q ss_pred HHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHH
Q 003749 551 FCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVE-KRQMEK 629 (798)
Q Consensus 551 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-~~~~~~ 629 (798)
+...|++++|+..|++++..... +...|..+..++.+.|++++|+..|+++++.... +...|+.+..++.+ .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 66666666666666666555433 4455555555555556666666666555554433 45555555555555 333344
Q ss_pred H-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-------
Q 003749 630 A-----IEILDEMTLAGISPNEHTYTTIMHGYASLG--DTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG------- 695 (798)
Q Consensus 630 A-----~~~~~~m~~~~~~p~~~t~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 695 (798)
| +..|++.++.. +-+...|..+..++...| ++++|++.+.++ +... .+...+..|+.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p-~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH-SSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-CCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-CCHHHHHHHHHHHHHHhcccccch
Confidence 4 34455544432 223445555555555544 345555555554 2221 23444555555555442
Q ss_pred --ChHHHHHHHHHH
Q 003749 696 --RMQSALAVTKEM 707 (798)
Q Consensus 696 --~~~~A~~~~~~~ 707 (798)
.+++|+.+++++
T Consensus 331 ~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 331 EDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 134555555555
No 175
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.61 E-value=1.2e-11 Score=137.67 Aligned_cols=233 Identities=9% Similarity=-0.025 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHH-HHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 003749 523 ANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAI-HIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDM 601 (798)
Q Consensus 523 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 601 (798)
+.+..+|++.+..-.. +...|...+..+...|+.++|. .+|++...... .+...|...+....+.|+++.|.++|++
T Consensus 326 ~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4456778888776443 7888888888888889988996 99999887532 3555677778888889999999999998
Q ss_pred HHHcC---------CCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 003749 602 MRRSG---------CIP------------TVHTFNALILGLVEKRQMEKAIEILDEMTLA-GISPNEHTYTTIMHGYASL 659 (798)
Q Consensus 602 ~~~~~---------~~p------------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~t~~~li~~~~~~ 659 (798)
+++.. ..| ...+|...+....+.|..+.|..+|.++.+. . ......|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHh
Confidence 87631 012 1336777777777889999999999998875 2 22334444433333444
Q ss_pred -CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHH
Q 003749 660 -GDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIP--RNTFVYNILIDGWARRGDVWEAA 736 (798)
Q Consensus 660 -g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~ 736 (798)
++.+.|.++|+..++.- .-+...+...+......|+.+.|..+|++.+..... .....|..++..-.+.|+.+.+.
T Consensus 483 ~~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp TSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 45899999999998873 336777788888888899999999999999876421 13457888888888899999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 737 DLMQQMKQEGVQPDVHTYTSFINAC 761 (798)
Q Consensus 737 ~~~~~m~~~g~~pd~~~~~~l~~~~ 761 (798)
++.++|.+. .|+......+++-|
T Consensus 562 ~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 562 TLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHHh--CCCCcHHHHHHHHh
Confidence 999999986 34444444454444
No 176
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.61 E-value=3.2e-16 Score=135.31 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=74.2
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
...++|||+|||+++++++|+++|++|| |.+|+|+.| +. |+++|||||+|++.++|.+|+ .+ |+..|+||.|+|
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d-~~-g~srGfaFV~F~~~e~A~~Al-~~--~g~~l~gR~i~V 117 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIG-PD-GRVTGEADVEFATHEEAVAAM-SK--DRANMQHRYIEL 117 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCS-SS-SCSSCCCEEECSHHHHHHHHT-TC--CSCSSSSCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEC-CC-CCCceEEEEEeCCHHHHHHHH-hh--CCCEECCEEEEE
Confidence 3456999999999999999999999999 779999998 54 999999999999999999999 67 999999999999
Q ss_pred ecccccch
Q 003749 229 KLDDGRRL 236 (798)
Q Consensus 229 ~~~~~~~~ 236 (798)
..+..+..
T Consensus 118 ~~a~~~~~ 125 (139)
T 2hgn_A 118 FLNSTTGA 125 (139)
T ss_dssp EECCCSCC
T ss_pred EECCCCCC
Confidence 99877653
No 177
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.61 E-value=7.6e-12 Score=139.18 Aligned_cols=439 Identities=8% Similarity=0.019 Sum_probs=309.3
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
.+-+..|.+.+..||. |...|..++..+.+.++++.++.+|+++... ++.+...|...+..-.+
T Consensus 49 ~d~i~~lE~~l~~np~---------------d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~ 112 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPT---------------DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFD 112 (679)
T ss_dssp SCHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcC---------------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHh
Confidence 3457778888899997 7788899999999999999999999999987 46678889999999999
Q ss_pred cCC---hHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-cCC-CC-ChhhHHHHH
Q 003749 344 GRD---MEEALSCVRKMKEEG-IEMSLVTYSIIVGGFAKMGNA--------EAADHWFEEAKE-RHA-TL-NAIIYGNII 408 (798)
Q Consensus 344 ~g~---~~~A~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~-~~~~~~~l~ 408 (798)
.++ ++.+.++|++.+... ..+++..|...+....+.++. +.+.++|+.++. .|. .+ ....|...+
T Consensus 113 ~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi 192 (679)
T 4e6h_A 113 KMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYL 192 (679)
T ss_dssp C--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred hCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 999 999999999999863 137888999888877666553 345588888765 344 33 345777666
Q ss_pred HHHH---------hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------------cCCHHHHHHHHHHHHHC-
Q 003749 409 YAQC---------QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI-------------IGNEEKCLIVFERLKEC- 465 (798)
Q Consensus 409 ~~~~---------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~- 465 (798)
.... ..++++.+..+|++++..-......+|......-.. ..+++.|..++.++...
T Consensus 193 ~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~ 272 (679)
T 4e6h_A 193 HFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNIT 272 (679)
T ss_dssp HHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5543 244577888999998853211112333222211111 12334455555554321
Q ss_pred -CCC---------------c-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003749 466 -GFS---------------P-----S---IISYGCLINLYTKIG-------KVSKALEVSKVMKSSGIKHNMKTYSMLIN 514 (798)
Q Consensus 466 -~~~---------------~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 514 (798)
++. | + ...|...+..--..+ ..+.+..+|++++.. +.-+...|...+.
T Consensus 273 ~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~ 351 (679)
T 4e6h_A 273 KGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMAN 351 (679)
T ss_dssp TTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHH
T ss_pred HhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHH
Confidence 111 0 0 245656665443332 134456778888775 3457788888888
Q ss_pred HHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC---------CCCC---------
Q 003749 515 GFLKLKDWANVF-AVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER---------HRPT--------- 575 (798)
Q Consensus 515 ~~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~~~--------- 575 (798)
.+...|+.++|. .+|+.....-+ .+...|...+....+.|++++|..+|+++.... ..|+
T Consensus 352 ~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~ 430 (679)
T 4e6h_A 352 YQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLK 430 (679)
T ss_dssp HHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhc
Confidence 888889999997 99999987533 367778888999999999999999999987641 0121
Q ss_pred ---cccHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003749 576 ---SRTFMPIIHGFARAGEMKRALEIFDMMRRS-GCIPTVHTFNALILGLVEK-RQMEKAIEILDEMTLAGISPNEHTYT 650 (798)
Q Consensus 576 ---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~~~~p~~~t~~ 650 (798)
...|...+....+.|..+.|..+|.++++. .. .....|...+..-.+. ++.+.|.++|+..++. ..-+...|.
T Consensus 431 ~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~ 508 (679)
T 4e6h_A 431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYIN 508 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHH
Confidence 236888888888899999999999999875 22 1233443333333444 4589999999998876 345666777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003749 651 TIMHGYASLGDTGKAFEYFTKLRNEGLEL--DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILID 724 (798)
Q Consensus 651 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 724 (798)
..++.....|+.+.|..+|++++.....+ ....|..++.--.+.|+.+.+..+.+++.+.. |+......+++
T Consensus 509 ~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ 582 (679)
T 4e6h_A 509 KYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTN 582 (679)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHH
Confidence 88888888999999999999999875422 45688888888889999999999999999764 44333333333
No 178
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4.5e-16 Score=131.33 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=73.8
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcc----eEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecce
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPI----KNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v----~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~ 224 (798)
.+.++|||+|||+++|+++|+++|++||.| .+|+|+.| + +|+++|||||+|.+.++|.+|++. |+..|+||
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~-~gr~~G~aFV~F~~~~~A~~Al~~---~~~~l~gR 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-P-DGRPTGDAFVLFACEEYAQNALRK---HKDLLGKR 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-T-TSCEEEEEEECCSSHHHHHHHHTT---TTEESSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-C-CCCEeeEEEEEECCHHHHHHHHHh---CCCeeCCe
Confidence 456799999999999999999999999875 69999987 4 899999999999999999999973 89999999
Q ss_pred eeeeecccccc
Q 003749 225 VLTVKLDDGRR 235 (798)
Q Consensus 225 ~~~v~~~~~~~ 235 (798)
.|.|..+..+.
T Consensus 96 ~i~V~~a~~~e 106 (123)
T 2dha_A 96 YIELFRSTAAE 106 (123)
T ss_dssp EECCEEECHHH
T ss_pred EEEEEECCHHH
Confidence 99998886553
No 179
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=123.07 Aligned_cols=76 Identities=24% Similarity=0.476 Sum_probs=71.0
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.++++. +|||||+|.+.++|.+|++.+ |+..++|+.|+|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---------~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---------KNYGFVHIEDKTAAEDAIRNL--HHYKLHGVNINVE 75 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---------TTEEEEEESSHHHHHHHHHHH--TTCBCSSCBCEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHh--cCCccCCcEEEEE
Confidence 44699999999999999999999999999999987 589999999999999999999 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 76 ~a~~~~~ 82 (90)
T 2dnq_A 76 ASKNKSK 82 (90)
T ss_dssp CSSCCCC
T ss_pred ECCCCCC
Confidence 9987753
No 180
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.61 E-value=1.5e-15 Score=127.61 Aligned_cols=76 Identities=21% Similarity=0.363 Sum_probs=70.1
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcce-EEEEeCChhHHHHHHHhcccCCeeecc--eeeee
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGF-GFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLTV 228 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~~~~~~~~~~g--~~~~v 228 (798)
-+||||||++.+|+++|+++|++||.|.+|++..+ ++|| |||+|++.++|.+|++.| ||..|.| +.|+|
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~------~~gfqAFVef~~~~~A~~Ai~~L--nG~~i~g~~~~LrI 100 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK------NNQFQALLQYADPVSAQHAKLSL--DGQNIYNACCTLRI 100 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE------TTEEEEEEEESCHHHHHHHHHHH--TTCEEETTEEEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC------CCCcEEEEEECCHHHHHHHHHHc--CCCeecCCCcEEEE
Confidence 37899999999999999999999999999998764 2687 999999999999999999 9999988 99999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
+++++..
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998774
No 181
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.60 E-value=7e-16 Score=127.71 Aligned_cols=80 Identities=21% Similarity=0.476 Sum_probs=74.0
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||||||+++++++|+++|++||.|.++++..+ + +|+++|||||+|.+.++|.+|+. ++..++|+.|.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~-~g~~~g~afV~f~~~~~a~~Ai~----~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITD-R-TGVSKGYGFVSFYNDVDVQKIVE----SQINFHGKKLKLG 81 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC-T-TSCEEEEEEEEESSCCCHHHHTT----CCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEEC-C-CCCccceEEEEECCHHHHHHHHh----CCCeECCEEEEEE
Confidence 4469999999999999999999999999999999998 5 89999999999999999999986 7999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++.++.
T Consensus 82 ~a~~~~ 87 (102)
T 2xs2_A 82 PAIRKQ 87 (102)
T ss_dssp EEEECC
T ss_pred ECCcCc
Confidence 886553
No 182
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=122.17 Aligned_cols=75 Identities=23% Similarity=0.472 Sum_probs=70.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||+++++++|+++|++||.|.++++. ++||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---------~~~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---------KDYAFVHMERAEDAVEAIRGL--DNTEFQGKRMHVQ 77 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---------SSEEEEEESCHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---------CCEEEEEECCHHHHHHHHHHh--CCCeeCCcEEEEE
Confidence 45699999999999999999999999999999997 359999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 998775
No 183
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2e-15 Score=124.10 Aligned_cols=77 Identities=22% Similarity=0.331 Sum_probs=70.6
Q ss_pred ccccceeecCCCccCchHHHHHHhccc--CcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQF--GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
.+.++|||||||+++++++|+++|++| |.|.++++. +|||||+|.+.++|.+|+..| ||..|+|+.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---------~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l 81 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---------RDYAFVHFSNREDAVEAMKAL--NGKVLDGSPI 81 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---------SSEEEEEESSHHHHHHHHHHH--SSEEETTEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---------CCeEEEEeCCHHHHHHHHHHh--CCCEeCCcEE
Confidence 345699999999999999999999999 899988764 679999999999999999999 9999999999
Q ss_pred eeecccccch
Q 003749 227 TVKLDDGRRL 236 (798)
Q Consensus 227 ~v~~~~~~~~ 236 (798)
+|++++++..
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpd_A 82 EVTLAKPVDK 91 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCCC
Confidence 9999988753
No 184
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=120.27 Aligned_cols=75 Identities=24% Similarity=0.418 Sum_probs=68.9
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||||||.++++++|+++|++||.|.++++.++ +|||||+|.+.++|.+|++.| .||..++|++|+|+
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-------kg~afV~f~~~~~A~~a~~~l-~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-------QQCAFIQFATRQAAEVAAEKS-FNKLIVNGRRLNVK 82 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-------GTEEEEEESSHHHHHHHHHTT-TTTCEETTEECCEE
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-------CCEEEEEECCHHHHHHHHHHh-cCCeeECCCEEEEE
Confidence 3469999999999999999999999999999999976 899999999999999999853 27899999999999
Q ss_pred ccc
Q 003749 230 LDD 232 (798)
Q Consensus 230 ~~~ 232 (798)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 185
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=5.7e-16 Score=127.98 Aligned_cols=76 Identities=29% Similarity=0.543 Sum_probs=71.8
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++|||||||+++++++|+++|++||.|.+|++..+ ++|||||+|.+.++|.+|++.| ||..++|+.|+|+++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN------PPGFAFVEFEDPRDAEDAVRGL--DGKVICGSRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS------SSSEEEEECSSHHHHHHHHHHH--HHSCSSSCCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC------CCCEEEEEECCHHHHHHHHHHH--CCCeECCcEEEEEEc
Confidence 48999999999999999999999999999999875 6899999999999999999999 999999999999999
Q ss_pred cccc
Q 003749 232 DGRR 235 (798)
Q Consensus 232 ~~~~ 235 (798)
+++.
T Consensus 73 ~~~~ 76 (101)
T 2hvz_A 73 TGMP 76 (101)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 8765
No 186
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3e-15 Score=122.41 Aligned_cols=75 Identities=17% Similarity=0.288 Sum_probs=69.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||+ ++++++|+++|++||.|.+|++.+ ++|||||+|.+.++|.+|+..| ||..++|+.|+|+
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~-------~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-------PRNCAFVTYEKMESADQAVAEL--NGTQVESVQLKVN 82 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET-------TTTEEEEEESSHHHHHHHHHHT--TTEEETTEEEEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC-------CCCEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEE
Confidence 4569999996 899999999999999999999954 3899999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 83 ~a~~~~ 88 (97)
T 1x5p_A 83 IARKQP 88 (97)
T ss_dssp CCSSCC
T ss_pred ECCCCC
Confidence 998775
No 187
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=2.9e-13 Score=135.62 Aligned_cols=231 Identities=10% Similarity=0.019 Sum_probs=103.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHh
Q 003749 371 IIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA--PIDIYHMMMDGYTI 448 (798)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~l~~~~~~ 448 (798)
..+..+.+.|++++|+..|+++.+.... +..++..+..+|...|++++|++.++++.+....+ ...+|..+...|..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443221 33344444444444444444444444444421000 11224444455555
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003749 449 IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAV 528 (798)
Q Consensus 449 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 528 (798)
.|++++|+..|++..+.... +..+|..+..+|...|++++|+..|+++.+.. +.+...+..+...+...+++++|...
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554443221 33455555555555555555555555554432 22344444444222223355555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHCCC-CCC------cccHHHHHHHHHhcCCHHHHHHH
Q 003749 529 FEDVMRDGLKPDVVLYNNIIRAFCGMGN---MDRAIHIVKEMQKERH-RPT------SRTFMPIIHGFARAGEMKRALEI 598 (798)
Q Consensus 529 ~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~-~~~------~~~~~~li~~~~~~~~~~~a~~~ 598 (798)
|+++.+.... +...+..+..++...|+ +++|...|+++.+... .++ ...+..+...|.+.|++++|...
T Consensus 165 ~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 165 FVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555554322 34444445555554454 4445555554443210 011 12344444555555555555555
Q ss_pred HHHHHHc
Q 003749 599 FDMMRRS 605 (798)
Q Consensus 599 ~~~~~~~ 605 (798)
|+++.+.
T Consensus 244 ~~~al~~ 250 (272)
T 3u4t_A 244 WKNILAL 250 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 5555544
No 188
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.1e-15 Score=124.52 Aligned_cols=78 Identities=22% Similarity=0.479 Sum_probs=70.9
Q ss_pred ccccceeecCCCc-cCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 149 RQEGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 149 ~~~~~~~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
.+.++|||||||+ ++++++|+++|++||.|.++++. +|||||+|.+.++|.+|+..| ||..+.|+.|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~ 76 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---------NAFGFIQFDNPQSVRDAIECE--SQEMNFGKKLI 76 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---------TTEEEEEESCHHHHHHHHHHH--TCSSCBTTTBC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---------CCEEEEEECCHHHHHHHHHHc--CCCeeCCcEEE
Confidence 4567999999999 99999999999999999999984 689999999999999999999 99999999999
Q ss_pred eecccccchh
Q 003749 228 VKLDDGRRLK 237 (798)
Q Consensus 228 v~~~~~~~~~ 237 (798)
|++++++...
T Consensus 77 V~~a~~~~~~ 86 (96)
T 2kvi_A 77 LEVSSSNARP 86 (96)
T ss_dssp EEEEECCCC-
T ss_pred EEEcCcCCCC
Confidence 9999776533
No 189
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.3e-15 Score=117.00 Aligned_cols=70 Identities=14% Similarity=0.214 Sum_probs=64.0
Q ss_pred ceeecCCCccCchHH----HHHHhccc-CcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 153 KIFVGNLPNWIKKHL----VMEFFRQF-GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~----l~~~f~~~-g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
.|||+|||+.+++++ |+++|++| |.|.+| +| |||||+|.+.++|.+|++.| ||..+.||+|+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--------tg---G~AfV~F~~~esA~~A~~~l--~G~~l~gr~i~ 77 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--------TG---CSAILRFINQDSAERAQKRM--ENEDVFGNRII 77 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--------CT---TCEEEEESSHHHHHHHHHHH--TTCCSSSSCCE
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--------ec---CEEEEEECCHHHHHHHHHHh--cCCccCCceEE
Confidence 399999999999987 56899999 599988 23 99999999999999999999 99999999999
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|.+|+.+.
T Consensus 78 v~~A~~~s 85 (96)
T 2diu_A 78 VSFTPKNR 85 (96)
T ss_dssp EESSCCSC
T ss_pred EEecCCCc
Confidence 99998774
No 190
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.59 E-value=2.3e-15 Score=124.73 Aligned_cols=76 Identities=21% Similarity=0.437 Sum_probs=70.7
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|++. +|||||+|.+.++|.+|++.| |+..|+|+.|+|+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---------~~~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---------KDYAFIHFDERDGAVKAMEEM--NGKDLEGENIEIV 78 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---------SSCEEEEESSHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCEEEEEeCCHHHHHHHHHHH--CCCccCCCEEEEE
Confidence 44699999999999999999999999999999986 469999999999999999999 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 79 ~a~~~~~ 85 (103)
T 2dgu_A 79 FAKPPDQ 85 (103)
T ss_dssp ECCCCCC
T ss_pred EcCCCcc
Confidence 9987753
No 191
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.59 E-value=2.1e-15 Score=143.97 Aligned_cols=82 Identities=17% Similarity=0.377 Sum_probs=77.9
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++|||||||+++|+++|+++|++||.|.+|+|++| +.+|+++|||||+|.+.++|.+|++.+ |+..+.|+.+++.++
T Consensus 16 ~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~~G~afV~F~~~~~A~~Ai~~~--~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 16 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD-MITRRSLGYAYVNFQQPADAERALDTM--NFDVIKGKPVRIMWS 92 (213)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecc-cCCCCccccccceeCCHHHHHHHHHHh--hhhhcCCcccccccc
Confidence 48999999999999999999999999999999999 889999999999999999999999999 999999999999998
Q ss_pred cccch
Q 003749 232 DGRRL 236 (798)
Q Consensus 232 ~~~~~ 236 (798)
.....
T Consensus 93 ~~~~~ 97 (213)
T 4f02_A 93 QRDPS 97 (213)
T ss_dssp CCCTH
T ss_pred ccccc
Confidence 76643
No 192
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.59 E-value=1.7e-15 Score=138.20 Aligned_cols=82 Identities=24% Similarity=0.367 Sum_probs=77.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||+|||+++++++|+++|++||.|.+|.|..+ + +|+++|||||+|.+.++|.+|++.+ ||..|+|+.|+|+
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d-~-~g~~kG~afV~F~~~~~A~~Ai~~l--ng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYD-R-SGRSLGTADVHFERRADALKAMKQY--KGVPLDGRPMDIQ 162 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCC-T-TSSCSCCEEEEESCHHHHHHHHHHS--TTCBCSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-C-CCCEeeEEEEEeCCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 3469999999999999999999999999999999998 5 8999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 987654
No 193
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.59 E-value=2.6e-15 Score=120.10 Aligned_cols=76 Identities=21% Similarity=0.303 Sum_probs=70.0
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||||||+++++++|+++|++| .|.++++. +++|||||+|.+.++|.+|++.| ||..++|++|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-------~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~V~ 73 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-------RNKRTAFVTLLNGEQAQNAIQMF--HQYSFRGKDLIVQ 73 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-------GGGTEEEECCSCHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-------CCCcEEEEEECCHHHHHHHHHHh--CCCeECCcEEEEE
Confidence 45699999999999999999999999 99999885 34999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++....
T Consensus 74 ~a~~~~ 79 (88)
T 1wg1_A 74 LQPTDA 79 (88)
T ss_dssp ECCCCC
T ss_pred EcCCCc
Confidence 986653
No 194
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.59 E-value=2e-15 Score=131.92 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=70.7
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc--eeeeee
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLTVK 229 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g--~~~~v~ 229 (798)
.+||||||++.+++++|+++|++||.|++|++..+ +++|||||+|++.++|.+|++.| ||..|.| +.|+|+
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k-----~~rgfAFVeF~d~~~A~~Ai~~L--nG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSL--DGQNIYNACCTLRID 119 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES-----SSCEEEEEEESCHHHHHHHHHHS--TTBCSSSSCSCEEEE
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCCEEEEEECCHHHHHHHHHHh--CCCEecCCCcEEEEE
Confidence 37999999999999999999999999999999754 24799999999999999999999 9999965 999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998874
No 195
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=3e-15 Score=125.65 Aligned_cols=74 Identities=15% Similarity=0.277 Sum_probs=68.2
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcce-EEEEeCChhHHHHHHHhcccCCeeecc--eeeeee
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGF-GFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLTVK 229 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~~~~~~~~~~g--~~~~v~ 229 (798)
.||||||++.+++++|+++|++||.|++|++... .|| |||+|++.++|..|++.| ||..|.| +.|+|+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-------~Gf~aFVef~~~~~A~~A~~~L--nG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-------NGIQAMVEFESVLCAQKAKAAL--NGADIYAGCCTLKIE 97 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-------SSEEEEEEESSHHHHHHHHHHH--TTCCCBTTBSEEEEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-------CCCEEEEEECCHHHHHHHHHHh--CCCEecCCCeEEEEE
Confidence 6899999999999999999999999999999752 386 999999999999999999 9999987 699999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 98 ~Ak~~~ 103 (124)
T 2e5i_A 98 YARPTR 103 (124)
T ss_dssp CCSCSC
T ss_pred EecCCc
Confidence 998875
No 196
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.6e-15 Score=120.84 Aligned_cols=75 Identities=24% Similarity=0.415 Sum_probs=70.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||+++++++|+++|++||.|.++++. +|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---------~~~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---------KDYAFVHMEKEADAKAAIAQL--NGKEVKGKRINVE 76 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---------SSCEEEEESCHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 45699999999999999999999999999999997 459999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 998764
No 197
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.59 E-value=2.8e-15 Score=119.60 Aligned_cols=74 Identities=22% Similarity=0.422 Sum_probs=62.0
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCee--ecceeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE--FHGRVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~--~~g~~~~ 227 (798)
+..+|||||||+++++++|+++|++||.|.+|+++++ +||||||+|++.++|.+ + ++.. ++|+.|.
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~------srGfaFV~F~~~~~A~~----~--~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP------FRAFAFVTFADDKVAQS----L--CGEDLIIKGISVH 77 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS------CCSEEEEEESCHHHHHH----H--TTCEEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC------CCCEEEEEECCHHHHHH----H--cCCCcccCCEEEE
Confidence 3459999999999999999999999999999999864 69999999999999884 3 4444 5699999
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|.+++++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99998764
No 198
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.59 E-value=3.3e-15 Score=122.46 Aligned_cols=85 Identities=12% Similarity=0.129 Sum_probs=73.9
Q ss_pred ccccceeecCCCc-----cCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc
Q 003749 149 RQEGKIFVGNLPN-----WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (798)
Q Consensus 149 ~~~~~~~v~nl~~-----~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g 223 (798)
.+++.|+|+|+.. +-++++|+++|++||.|.+|+|.+++..+|+++|||||+|.+.++|.+|+..| ||..++|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~l--nG~~~~G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDL--NGRYFGG 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHH--TTCEETT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHH--CCCEECC
Confidence 3456999999952 23678999999999999999999984345789999999999999999999999 9999999
Q ss_pred eeeeeecccccc
Q 003749 224 RVLTVKLDDGRR 235 (798)
Q Consensus 224 ~~~~v~~~~~~~ 235 (798)
|.|+|.++....
T Consensus 84 r~i~v~~a~~~~ 95 (105)
T 2pe8_A 84 RVVKACFYNLDK 95 (105)
T ss_dssp EECEEEECCHHH
T ss_pred cEEEEEEcCHHH
Confidence 999999997654
No 199
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=6.1e-13 Score=131.55 Aligned_cols=201 Identities=12% Similarity=0.015 Sum_probs=144.4
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...|..+...|...|++++|+.+|+++.+.. ..+..++..+...|...|++++|+++|+++.+.. +.+..++..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556777788888888888888888888764 4467778888888888888888888888887764 3367778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHAT-LNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (798)
|...|++++|+++|+++...+.. .+...+..++.+|...|++++|.+.++++.+.. +.+..++..++..|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 88888888888888888762122 245566777777777778888877777777654 3345666677777777777777
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003749 455 CLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (798)
Q Consensus 455 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (798)
|+.+|+++.+... .+...+..+..++...|++++|.++++++.+.
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777665432 24556666666677777777777777766654
No 200
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.58 E-value=2.3e-15 Score=134.51 Aligned_cols=78 Identities=29% Similarity=0.574 Sum_probs=73.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||||||+++++++|+++|++||.|.+|++.++ ++|||||+|.+.++|.+|+..| ||..++|++|+|+
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN------PPGFAFVEFEDPRDAADAVREL--DGRTLCGCRVRVE 143 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS------SCSEEEEEESSHHHHHHHHHHH--SSSCSSSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC------CCcEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEE
Confidence 4569999999999999999999999999999999875 5899999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 144 ~a~~~~ 149 (150)
T 2i2y_A 144 LSNGEK 149 (150)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998764
No 201
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.6e-15 Score=122.73 Aligned_cols=78 Identities=14% Similarity=0.263 Sum_probs=70.7
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEE-EecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVI-LIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
..++|||||||+++++++|+++|++||.|.+++ ++.+ +.+| .|||+|.+.++|.+|+..| ||..++|+.|+|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~-~~~~----~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~V 86 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTD-SETA----VVNVTYSSKDQARQALDKL--NGFQLENFTLKV 86 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCS-SSSE----EEEEEESSHHHHHHHHHHH--TTCBCSSCBCEE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecC-CCCC----EEEEEECCHHHHHHHHHHh--CCCEECCcEEEE
Confidence 346999999999999999999999999999995 7776 4443 4999999999999999999 999999999999
Q ss_pred eccccc
Q 003749 229 KLDDGR 234 (798)
Q Consensus 229 ~~~~~~ 234 (798)
+++.++
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 999876
No 202
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.58 E-value=6.4e-16 Score=136.90 Aligned_cols=84 Identities=18% Similarity=0.288 Sum_probs=72.8
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEE-----ecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVIL-----IKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~-----~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g 223 (798)
.++++|||||||+++++++|+++|++||.|..+.+ ++. ..+|+++|||||+|.+.++|.+|+..| ||..|+|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l--ng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEA--NGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHH--TTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHh--CCCEeCC
Confidence 34569999999999999999999999999987411 111 246899999999999999999999999 9999999
Q ss_pred eeeeeecccccc
Q 003749 224 RVLTVKLDDGRR 235 (798)
Q Consensus 224 ~~~~v~~~~~~~ 235 (798)
+.|+|+++++..
T Consensus 120 ~~l~V~~a~~~~ 131 (143)
T 3egn_A 120 KPMVVQFARSAR 131 (143)
T ss_dssp EECEEEECCCSC
T ss_pred cEEEEEECCCCC
Confidence 999999997754
No 203
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=4.2e-15 Score=120.71 Aligned_cols=76 Identities=20% Similarity=0.391 Sum_probs=68.6
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||+++++++|+++|++||.|.+| +.+ +.+|+ ||||+|.+.++|.+|+. | ||..|+|+.|+|++
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~-~~~g~---~afV~f~~~~~a~~ai~-l--~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMD-KDKGV---FAIVEMGDVGAREAVLS-Q--SQHSLGGHRLRVRP 78 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EEC-SSSCC---EEEEEESSHHHHHHHHT-C--SCCEETTEECCCBC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEc-CCCCc---EEEEEECCHHHHHHHHh-c--CCeEECCEEEEEEE
Confidence 4599999999999999999999999999987 445 55555 99999999999999999 8 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
+.++.
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 87664
No 204
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.5e-15 Score=121.96 Aligned_cols=76 Identities=22% Similarity=0.478 Sum_probs=68.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCc-ceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCC-eeecceeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGP-IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG-VEFHGRVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~-~~~~g~~~~ 227 (798)
+.++|||||||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.| || ..++|+.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~--------~~g~afV~f~~~~~A~~A~~~l--~g~~~~~g~~l~ 76 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL--------KSGYAFVDYPDQNWAIRAIETL--SGKVELHGKIME 76 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE--------ETTEEEECCSCHHHHHHHHHHH--TTTCEETTEECE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc--------CCCEEEEEECCHHHHHHHHHHc--cCCeeECCEEEE
Confidence 3469999999999999999999999999 6666553 2899999999999999999999 99 999999999
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|++++++.
T Consensus 77 v~~a~~~~ 84 (93)
T 2cqh_A 77 VDYSVSKK 84 (93)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998775
No 205
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=8.8e-14 Score=139.66 Aligned_cols=121 Identities=12% Similarity=-0.099 Sum_probs=65.5
Q ss_pred HcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003749 308 RRGDMHRARQTFENMRARGIE---PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEA 384 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 384 (798)
..|++++|+..|+++.+.... .+..++..+...|...|++++|+..|+++++.. +.+..+|..++..|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 345566666666666654211 123445555566666666666666666665543 2245555566666666666666
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 385 ADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 430 (798)
|++.|+++...... +..++..++.+|.+.|++++|.+.|+++.+.
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66666655554222 3445555555555555555555555555543
No 206
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=1.8e-13 Score=134.45 Aligned_cols=201 Identities=14% Similarity=0.052 Sum_probs=135.1
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
....|..+...+...|++++|+.+|+++.+.. ..+..++..+...|.+.|++++|+..|+++.+.. +.+..++..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 45567778888888899999999999888764 4467788888888888888999988888888764 336778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (798)
.|...|++++|++.|+++.+... .+..++..++.+|.+.|++++|.+.++++.+.. +.+..++..+...|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 88888888888888888877643 356677777778888888888888888877764 3456667777777777777777
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003749 455 CLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (798)
Q Consensus 455 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (798)
|+..|+++.+... .+..++..+..+|...|++++|...++++.+.
T Consensus 178 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777777766532 24566666777777777777777777776664
No 207
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.57 E-value=1.1e-14 Score=122.21 Aligned_cols=74 Identities=23% Similarity=0.516 Sum_probs=69.3
Q ss_pred ccceeecCCCcc-CchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 151 EGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 151 ~~~~~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
.++|||||||++ +++++|+++|++||.|.+|++ ++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---------~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---------HKGYAFVQYSNERHARAAVLGE--NGRVLAGQTLDIN 95 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---------ETTEEEEECSSSHHHHHHHHHH--TTCEETTEECCEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---------eCCEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEE
Confidence 469999999999 999999999999999999998 2799999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 96 ~a~~~~ 101 (110)
T 1wf1_A 96 MAGEPK 101 (110)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 997554
No 208
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=9.2e-13 Score=130.27 Aligned_cols=208 Identities=16% Similarity=0.056 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 541 VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILG 620 (798)
Q Consensus 541 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 620 (798)
...+..+...+...|++++|+..|+++...... +...+..+...|.+.|++++|+.+|+++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 345666666777777777777777777665432 4566677777777888888888888877766433 66777778888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH
Q 003749 621 LVEKRQMEKAIEILDEMTLAGISP-NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQS 699 (798)
Q Consensus 621 ~~~~~~~~~A~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 699 (798)
|...|++++|+++|+++.+.+..+ +...+..+..++...|++++|.++|+++.+.... +...+..+..+|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887632233 4567778888888889999999998888877543 67788888888999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003749 700 ALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTY 754 (798)
Q Consensus 700 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 754 (798)
|..+++++.+.. +.+...+..++..+.+.|++++|.++++++.+. .|+...+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 245 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEY 245 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHH
Confidence 999999888765 567778888888888999999999999998875 3444333
No 209
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.3e-15 Score=126.03 Aligned_cols=77 Identities=23% Similarity=0.390 Sum_probs=67.9
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCC---CCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNF---EKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
..++|||||||+++++++|+++|++||.|. +.++.+ +.+ |+++|||||+|++.++|.+|++.| + .++|+.+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~-~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~--~--~~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHK-AESKSYFPPKGYAFLLFQEESSVQALIDAC--L--EEDGKLY 80 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTS-SSSCCCSCTTSEEEECCSSHHHHHHHHHHS--E--EETTEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeec-CCCCCCCCcccEEEEEECCHHHHHHHHHhh--h--hcCCcEE
Confidence 456999999999999999999999999999 888887 555 899999999999999999999987 4 4788888
Q ss_pred eeeccc
Q 003749 227 TVKLDD 232 (798)
Q Consensus 227 ~v~~~~ 232 (798)
.+..+.
T Consensus 81 ~~~~~~ 86 (114)
T 2dnl_A 81 LCVSSP 86 (114)
T ss_dssp EEECCS
T ss_pred EeccCC
Confidence 776553
No 210
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=1.2e-12 Score=126.71 Aligned_cols=203 Identities=10% Similarity=-0.009 Sum_probs=141.2
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
+...|..+...|...|++++|+++|+++.+.. ..+...+..+...|...|++++|++.|+++.+.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34556777778888888888888888887763 3456677778888888888888888888887763 336677777888
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 003749 375 GFAKM-GNAEAADHWFEEAKERHATL-NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNE 452 (798)
Q Consensus 375 ~~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (798)
.|... |++++|+..|+++.+....+ +..++..++.+|...|++++|.+.++++.+.. +.+...+..++.+|...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 88888888888877621112 35566777777777777777777777777653 33466666777777777777
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003749 453 EKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (798)
Q Consensus 453 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (798)
++|..+|+++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777777666432134555666666666777777777766666543
No 211
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=8.7e-14 Score=139.69 Aligned_cols=249 Identities=10% Similarity=-0.028 Sum_probs=186.9
Q ss_pred HHccCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 003749 341 YAVGRDMEEALSCVRKMKEEGI---EMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNM 417 (798)
Q Consensus 341 ~~~~g~~~~A~~~~~~m~~~g~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 417 (798)
+...|++++|+..|+++++... +.+..+|..++..|...|++++|+..|+++...+.. +..++..++.+|...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCH
Confidence 3456888999999999887532 124677888899999999999999999999887543 778888899999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 418 ERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVM 497 (798)
Q Consensus 418 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (798)
++|.+.|+++++.. +.+..++..+..+|...|++++|+..|+++.+.. |+......++..+...|++++|+..+++.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999998874 4467888889999999999999999999988753 34444445555667779999999999877
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 003749 498 KSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKP---DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP 574 (798)
Q Consensus 498 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 574 (798)
.... ..+...+. ++..+...++.++|+..++...+..... +..++..+...|...|++++|...|+++.... |
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 7653 23333443 6667777888888998888876542211 24678888899999999999999999988764 2
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHH
Q 003749 575 TSRTFMPIIHGFARAGEMKRALEIF 599 (798)
Q Consensus 575 ~~~~~~~li~~~~~~~~~~~a~~~~ 599 (798)
+ .+.....++.+.|++++|++.+
T Consensus 247 ~--~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 H--NFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--TCHHHHHHHHHHHHHHHC----
T ss_pred h--hHHHHHHHHHHHHHHHhhHHHH
Confidence 2 2334455677888888888776
No 212
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=2.6e-13 Score=133.34 Aligned_cols=203 Identities=11% Similarity=0.042 Sum_probs=131.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (798)
+...|..+...+...|++++|+.+|+++++.. +.+..++..++..|.+.|++++|++.|+++..... .+..++..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 44566777777888888888888888887753 33677788888888888888888888888877643 36677777778
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHH
Q 003749 410 AQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSK 489 (798)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 489 (798)
+|...|++++|.+.++++.+.. +.+..++..++..|...|++++|+.+++++.+... .+...+..+..+|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888877764 34566777777777777777777777777776532 256667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003749 490 ALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGL 537 (798)
Q Consensus 490 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 537 (798)
|+..++++.+.. ..+..++..+..+|...|++++|...|+++.+...
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 777777776653 23456666677777777777777777777666543
No 213
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.56 E-value=3.9e-14 Score=142.35 Aligned_cols=76 Identities=22% Similarity=0.421 Sum_probs=70.7
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec-ceeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GRVLT 227 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~-g~~~~ 227 (798)
...++|||+||+.++++++|+++|++||.|.+|+++.+ + +|||||+|.+.++|.+|++.| ||..++ |+.|+
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~-~-----~g~afV~f~~~~~A~~A~~~l--~g~~~~~g~~l~ 276 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG-R-----HDIAFVEFDNEVQAGAARDAL--QGFKITQNNAMK 276 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC-C-----CcEEEEEeCCHHHHHHHHHHc--CCcEeCCCCEEE
Confidence 34568999999999999999999999999999999976 2 599999999999999999999 999999 99999
Q ss_pred eeccc
Q 003749 228 VKLDD 232 (798)
Q Consensus 228 v~~~~ 232 (798)
|.|++
T Consensus 277 v~~ak 281 (282)
T 3pgw_A 277 ISFAK 281 (282)
T ss_pred EEEec
Confidence 99985
No 214
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=3.1e-12 Score=123.74 Aligned_cols=203 Identities=11% Similarity=0.000 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (798)
+...+..+...|...|++++|+++|+++.+.. +.+..+|..++..|...|++++|++.|+++..... .+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 44566777777777888888888887777753 33566777777777778888888888777776533 25666777777
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH
Q 003749 410 AQCQT-RNMERAEALVRDMEEEGIDA-PIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKV 487 (798)
Q Consensus 410 ~~~~~-g~~~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 487 (798)
+|... |++++|.+.++++.+.+..+ +..++..+..+|...|++++|+..|+++.+.... +...+..+..+|...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 77777 77777777777777622122 2455666667777777777777777776664322 455666666666667777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003749 488 SKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD 535 (798)
Q Consensus 488 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (798)
++|..+++++.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777776666665432134555555556666666666666666666543
No 215
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.55 E-value=1.6e-14 Score=151.61 Aligned_cols=84 Identities=25% Similarity=0.436 Sum_probs=79.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++||||||++++|+++|+++|++||.|+.|.|+.+ +.+|+++|||||+|.+.++|.+||..| ||+.|+|+.|.|.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~kG~aFV~F~~~e~A~~Ai~~l--ng~~i~gr~i~V~ 177 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYS-KRSGKPRGYAFIEYEHERDMHSAYKHA--DGKKIDGRRVLVD 177 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeecc-CCCCCccceEEEeeccHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 4569999999999999999999999999999999998 889999999999999999999999999 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
++.++..
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9987643
No 216
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.55 E-value=8.3e-15 Score=117.34 Aligned_cols=71 Identities=30% Similarity=0.606 Sum_probs=66.4
Q ss_pred cccceeecCCCccCchHHHHHHhccc----C-------cceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCC
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQF----G-------PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG 218 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 218 (798)
+.++|||||||+++++++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .| ||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-------kg~afV~f~~~~~a~~A~-~l--~g 74 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-------KNFAFLEFRSVDETTQAM-AF--DG 74 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-------SSEEEEEESSHHHHHHHG-GG--TT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-------CcEEEEEcCCHHHHHHHH-hc--CC
Confidence 45699999999999999999999999 8 8999999876 899999999999999999 88 99
Q ss_pred eeecceeeeeec
Q 003749 219 VEFHGRVLTVKL 230 (798)
Q Consensus 219 ~~~~g~~~~v~~ 230 (798)
..++|+.|+|+.
T Consensus 75 ~~~~g~~l~V~r 86 (87)
T 2hzc_A 75 IIFQGQSLKIRR 86 (87)
T ss_dssp CEETTEECEEEC
T ss_pred CEECCeEEEEeC
Confidence 999999999863
No 217
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.54 E-value=7.9e-15 Score=123.71 Aligned_cols=74 Identities=22% Similarity=0.329 Sum_probs=66.4
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee-----
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV----- 225 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~----- 225 (798)
.++|||+|||+++++++|+++|++||.|.+|.|+.+ |||||+|.+.++|.+|++.| ||..|+|+.
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l--~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--------GTGVVEFVRKEDMTYAVRKL--DNTKFRSHEGETAY 85 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--------SEEEEEESSHHHHHHHHHHH--TTCBCCCTTSCCCB
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--------CEEEEEECCHHHHHHHHHHh--CCCEECCcEeeeEE
Confidence 469999999999999999999999999999999864 89999999999999999999 999999999
Q ss_pred eeeeccccc
Q 003749 226 LTVKLDDGR 234 (798)
Q Consensus 226 ~~v~~~~~~ 234 (798)
++|..+.++
T Consensus 86 i~v~~~~~~ 94 (115)
T 3beg_B 86 IRVKVDGPR 94 (115)
T ss_dssp CEEEECC--
T ss_pred EEeccCCCC
Confidence 677766554
No 218
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.54 E-value=9.3e-15 Score=134.41 Aligned_cols=83 Identities=19% Similarity=0.410 Sum_probs=78.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
++++|||||||.++++++|+++|++||.|.++++.++ +.+|+++|||||+|.+.++|.+|++.+ ||..++|+.|+|.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRD-YKTGYSYGYAFVDFTSEMDSQRAIKVL--NGITVRNKRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEE-TTTTEECSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEe-CCCCccceEEEEEECCHHHHHHHHHhc--CCCEeCCcEEEEE
Confidence 3569999999999999999999999999999999998 789999999999999999999999989 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++++..
T Consensus 79 ~~~~~~ 84 (168)
T 1b7f_A 79 YARPGG 84 (168)
T ss_dssp ECCCCS
T ss_pred ecCCCc
Confidence 997664
No 219
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.54 E-value=1.3e-14 Score=133.32 Aligned_cols=82 Identities=20% Similarity=0.450 Sum_probs=77.9
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||+++++++|+++|++||.|.+++++++ +.+|+++|||||+|.+.++|.+|++.+ ||..+.|+.|+|.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRD-KITGQSLGYGFVNYIDPKDAEKAINTL--NGLRLQTKTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCCcceeEEEEEECCHHHHHHHHHHc--CCCccCCceEEEEe
Confidence 469999999999999999999999999999999998 779999999999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
+.+..
T Consensus 79 ~~~~~ 83 (167)
T 1fxl_A 79 ARPSS 83 (167)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 97664
No 220
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=2.3e-13 Score=145.70 Aligned_cols=277 Identities=13% Similarity=0.056 Sum_probs=164.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHc----C-CCCCHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTL----HVYTNLIHAYAVGRDMEEALSCVRKMKEE----G-IEMSLV 367 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g-~~~~~~ 367 (798)
..+..+...+...|++++|+.+|+++.+.+ ..+. .++..+...|...|++++|+..|++.++. + ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 345566778889999999999999999874 2233 46888888999999999999999887653 1 122456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhcCC-----------------hHHHHHHHH
Q 003749 368 TYSIIVGGFAKMGNAEAADHWFEEAKERH-----ATLNAIIYGNIIYAQCQTRN-----------------MERAEALVR 425 (798)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~ 425 (798)
++..+...|...|++++|+..|+++.... ......++..+..+|...|+ +++|++.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 78888888999999999999988876541 11134466777777777787 777777766
Q ss_pred HHHHcC----C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003749 426 DMEEEG----I-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFS-PS----IISYGCLINLYTKIGKVSKALEVSK 495 (798)
Q Consensus 426 ~m~~~~----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~ 495 (798)
+..+.. . .....++..+...|...|++++|+..|++..+.... .+ ..++..+..+|...|++++|+..++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 654421 0 011234555566666666666666666655442100 01 1244455555555555555555555
Q ss_pred HHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC-
Q 003749 496 VMKSSGIK-HNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR- 573 (798)
Q Consensus 496 ~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~- 573 (798)
++.+.... .+. .....++..+...|...|++++|...|++.......
T Consensus 288 ~al~~~~~~~~~-------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 288 RTLALAVELGER-------------------------------EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCH-------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 44432100 000 001234444555555555555555555544332100
Q ss_pred ----CCcccHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003749 574 ----PTSRTFMPIIHGFARAGEMKRALEIFDMMRRS 605 (798)
Q Consensus 574 ----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 605 (798)
....++..+...|.+.|++++|...|++..+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 01234555666666666666666666666654
No 221
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.7e-14 Score=132.48 Aligned_cols=80 Identities=20% Similarity=0.392 Sum_probs=76.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|+..| ||..++|+.|+|.
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~i~v~ 162 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD-MQTGSSRGYGFVSFTSQDDAQNAMDSM--QGQDLNGRPLRIN 162 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHh--CCCccCCcEEEEE
Confidence 3458999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred ccc
Q 003749 230 LDD 232 (798)
Q Consensus 230 ~~~ 232 (798)
+++
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 985
No 222
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=4.1e-13 Score=143.30 Aligned_cols=203 Identities=18% Similarity=0.098 Sum_probs=130.2
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCC-CC
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT----LHVYTNLIHAYAVGRDMEEALSCVRKMKEE----GIE-MS 365 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~-~~ 365 (798)
....+..+...+...|++++|+.+|+++.+.+ ..+ ..++..+...|...|++++|+..|++..+. +-. ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 45556777888889999999999999998873 223 356788888899999999999999887543 111 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCC--------------------hHHH
Q 003749 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT-LN----AIIYGNIIYAQCQTRN--------------------MERA 420 (798)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A 420 (798)
..++..+...|...|++++|+..|+++...... .+ ..++..+..+|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 556788888888999999999888887653111 01 3366677777777777 7777
Q ss_pred HHHHHHHHHc----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcC----HHHHHHHHHHHHHcCCHHHH
Q 003749 421 EALVRDMEEE----GI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF-SPS----IISYGCLINLYTKIGKVSKA 490 (798)
Q Consensus 421 ~~~~~~m~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A 490 (798)
.+.+++..+. +. .....++..+...|...|++++|+..|++..+... ..+ ..++..+..+|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7777665442 10 01123455556666666666666666665543210 001 12445555555555555555
Q ss_pred HHHHHHHH
Q 003749 491 LEVSKVMK 498 (798)
Q Consensus 491 ~~~~~~m~ 498 (798)
+..+++..
T Consensus 247 ~~~~~~al 254 (406)
T 3sf4_A 247 SEYYKKTL 254 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 223
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.52 E-value=8.9e-15 Score=134.32 Aligned_cols=82 Identities=30% Similarity=0.539 Sum_probs=77.4
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
...++|||+|||.++++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|++ + ||..++|++|+|
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~-~--~~~~~~g~~i~V 160 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLD-KDTGQSRGFGFVTYDSADAVDRVCQ-N--KFIDFKDRKIEI 160 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCS-SSSSTTSEEEEEEESSHHHHHHHHH-C--SEECSSSSCEEE
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEc-CCCCccceEEEEEECCHHHHHHHHh-C--CCEEeCCeEEEE
Confidence 34569999999999999999999999999999999998 7899999999999999999999997 7 999999999999
Q ss_pred eccccc
Q 003749 229 KLDDGR 234 (798)
Q Consensus 229 ~~~~~~ 234 (798)
++++++
T Consensus 161 ~~a~pk 166 (167)
T 2cjk_A 161 KRAEPR 166 (167)
T ss_dssp EECCCC
T ss_pred eecCCC
Confidence 999876
No 224
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=8.6e-15 Score=117.24 Aligned_cols=77 Identities=19% Similarity=0.353 Sum_probs=66.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||+++++++|+++|++||.|.+|+++++ ++|||||+|.+.++|.++.. .+..++|+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~~~~----~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP------FRAFAFVTFADDQIAQSLCG----EDLIIKGISVHIS 73 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS------CCSCCEEECSCHHHHHHTTT----CEEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC------CCCEEEEEECCHHHHHHHhc----CCceeCCEEEEEE
Confidence 3569999999999999999999999999999999864 58999999999999976432 2455689999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 74 ~a~~~~~ 80 (88)
T 1wf0_A 74 NAEPKHN 80 (88)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9988753
No 225
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.51 E-value=2.2e-14 Score=134.75 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=71.9
Q ss_pred cccceeecCCC-ccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 150 QEGKIFVGNLP-NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 150 ~~~~~~v~nl~-~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
++++||||||+ +.+++++|+++|++||.|.+|+++++ ++|||||+|.+.++|.+|++.| ||..+.|++|+|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~l--ng~~~~g~~l~v 74 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS------KPGAAMVEMADGYAVDRAITHL--NNNFMFGQKMNV 74 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT------STTCEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC------CCCEEEEEECCHHHHHHHHHHh--CCCEECCceEEE
Confidence 46799999999 89999999999999999999999876 2799999999999999999999 999999999999
Q ss_pred eccccc
Q 003749 229 KLDDGR 234 (798)
Q Consensus 229 ~~~~~~ 234 (798)
.+++..
T Consensus 75 ~~s~~~ 80 (205)
T 3tyt_A 75 CVSKQP 80 (205)
T ss_dssp EECSCS
T ss_pred EEccCC
Confidence 998754
No 226
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.51 E-value=2e-14 Score=137.13 Aligned_cols=81 Identities=25% Similarity=0.462 Sum_probs=75.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||+||++++++++|+++|++||.|.+++|++| + +.++|||||+|.+.++|.+|++.| ||..|+||+|+|+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d-~--~~~~g~~fV~f~~~~~a~~Ai~~l--ng~~~~g~~i~V~ 176 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E--NGSKGYGFVHFETQEAAERAIEKM--NGMLLNDRKVFVG 176 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-T--TEEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeecc-C--CCCceEEEEEeCCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 4568999999999999999999999999999999987 2 457999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 177 ~a~~~~ 182 (213)
T 4f02_A 177 RFKSRK 182 (213)
T ss_dssp ECCCHH
T ss_pred EcCCCc
Confidence 998764
No 227
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.51 E-value=2e-14 Score=121.89 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=69.0
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||+ ++++++|+++|++||.|.+|++... +|||||+|.+.++|.+|+..| ||..++|+.|+|.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~-------kg~aFV~f~~~~~A~~Ai~~l--ng~~~~g~~l~V~ 106 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP-------RNCAFVTYEKMESADQAVAEL--NGTQVESVQLKVN 106 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETT-------TTEEEEECSSHHHHHHHHHHH--TTCBCSSCBCEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCC-------CCEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEE
Confidence 3459999996 7999999999999999999999643 899999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 107 ~a~~~~ 112 (121)
T 2bz2_A 107 IARKQP 112 (121)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 998774
No 228
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.51 E-value=2.4e-14 Score=132.12 Aligned_cols=78 Identities=27% Similarity=0.548 Sum_probs=75.1
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||+|||.++++++|+++|++||.|.++++.++ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|++
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD-SATGLSKGYAFCEYVDINVTDQAIAGL--NGMQLGDKKLLVQR 170 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEEC-TTTCSEEEEEEEEESSTTHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHc--CCCEECCeEEEEEe
Confidence 469999999999999999999999999999999998 789999999999999999999999999 99999999999998
Q ss_pred c
Q 003749 231 D 231 (798)
Q Consensus 231 ~ 231 (798)
|
T Consensus 171 A 171 (172)
T 2g4b_A 171 A 171 (172)
T ss_dssp C
T ss_pred C
Confidence 7
No 229
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=5.3e-13 Score=138.18 Aligned_cols=277 Identities=15% Similarity=0.098 Sum_probs=162.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCC-CCHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPT----LHVYTNLIHAYAVGRDMEEALSCVRKMKEE----GIE-MSLV 367 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~ 367 (798)
..+......+...|++++|+.+|+++.+.. ..+ ...+..+...|...|++++|+..+++..+. +.. ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 345566778889999999999999999874 223 357788888999999999999999887643 111 1355
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCC--------------------hHHHHH
Q 003749 368 TYSIIVGGFAKMGNAEAADHWFEEAKERHAT-LN----AIIYGNIIYAQCQTRN--------------------MERAEA 422 (798)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A~~ 422 (798)
++..+...|...|++++|+..|+++...... .+ ..++..+..+|...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 7788888888999999999988887653111 11 3366677777777777 777777
Q ss_pred HHHHHHHc----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C-CcCHHHHHHHHHHHHHcCCHHHHHH
Q 003749 423 LVRDMEEE----GI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG----F-SPSIISYGCLINLYTKIGKVSKALE 492 (798)
Q Consensus 423 ~~~~m~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~-~~~~~~~~~li~~~~~~g~~~~A~~ 492 (798)
.+++..+. +. .....++..+...|...|++++|+..+++..+.. . .....++..+...|...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77665432 10 0112345555566666666666666666554320 0 0011244445555555555555555
Q ss_pred HHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 003749 493 VSKVMKSSGIK-HNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER 571 (798)
Q Consensus 493 ~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 571 (798)
.+++..+.... .+. .....++..+...|...|++++|...+++.....
T Consensus 245 ~~~~al~~~~~~~~~-------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 245 YYKKTLLLARQLKDR-------------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcch-------------------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 55544321000 000 0002344445555555555555555555543321
Q ss_pred CC-----CCcccHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003749 572 HR-----PTSRTFMPIIHGFARAGEMKRALEIFDMMRRS 605 (798)
Q Consensus 572 ~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 605 (798)
.. ....++..+...|.+.|++++|...++++.+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 00 01234455666666666666666666666553
No 230
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=6.3e-13 Score=141.88 Aligned_cols=303 Identities=14% Similarity=0.090 Sum_probs=181.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-C
Q 003749 435 PIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS----IISYGCLINLYTKIGKVSKALEVSKVMKSS----GIKH-N 505 (798)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~ 505 (798)
....+..+...+...|++++|+..|++..+.+.. + ..+|..+...|...|++++|+..++++... +..+ .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4455666667777777777777777777665322 2 245666667777777777777777665432 1000 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 003749 506 MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK-PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIH 584 (798)
Q Consensus 506 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 584 (798)
..++..+...|...|++++|...+++..+.... .+. .....++..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHH
Confidence 234444555555555666555555554432100 000 000123444444
Q ss_pred HHHhcCC--------------------HHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 585 GFARAGE--------------------MKRALEIFDMMRRS----GCI-PTVHTFNALILGLVEKRQMEKAIEILDEMTL 639 (798)
Q Consensus 585 ~~~~~~~--------------------~~~a~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 639 (798)
.|...|+ +++|+..+.+..+. +.. ....++..+...|...|++++|+..+++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555 55665555554321 100 1134566667777778888888887777654
Q ss_pred CCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003749 640 AGI-SPN----EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLE-LD----VFTYEALLKACCKSGRMQSALAVTKEMSA 709 (798)
Q Consensus 640 ~~~-~p~----~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (798)
... ..+ ..+|..+...|...|++++|..+++++.+.... .+ ..++..+..+|...|++++|..+++++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 210 111 236777788888888888888888887654211 11 55677888888888888888888887764
Q ss_pred CCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCccc
Q 003749 710 QKI-PRN----TFVYNILIDGWARRGDVWEAADLMQQMKQE----GVQP-DVHTYTSFINACSKAGDMQV 769 (798)
Q Consensus 710 ~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~~~~~l~~~~~~~g~~~~ 769 (798)
..- ..+ ..++..+..+|...|++++|++.+++..+. |..+ ...++..+...+...|+...
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 310 011 457788888888899999999888887653 2111 24467777888888887643
No 231
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.50 E-value=6.7e-14 Score=132.55 Aligned_cols=84 Identities=25% Similarity=0.491 Sum_probs=79.1
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
...++|||+|||.++++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 188 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD-SATGLSKGYAFCEYVDINVTDQAIAGL--NGMQLGDKKLLV 188 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEEC-TTTCSEEEEEEEEESSSSHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeec-CCCCCcceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEE
Confidence 34569999999999999999999999999999999998 779999999999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
.+++++.
T Consensus 189 ~~a~~~~ 195 (198)
T 2yh0_A 189 QRASVGA 195 (198)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9998774
No 232
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=8.2e-12 Score=127.45 Aligned_cols=217 Identities=13% Similarity=0.143 Sum_probs=159.3
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHH-------HcCCh-------HHHHHHHHHHHH-CCCC
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYA-------RRGDM-------HRARQTFENMRA-RGIE 328 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~ 328 (798)
++|...|++++..+|. +...|..++..+. +.|++ ++|+.+|++.++ .. +
T Consensus 33 ~~a~~~~~~al~~~p~---------------~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p 96 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH---------------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-K 96 (308)
T ss_dssp HHHHHHHHHHHHHHTT---------------CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-T
T ss_pred HHHHHHHHHHHHHcCC---------------CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-c
Confidence 6788999999998887 5566666666665 35776 899999999988 33 3
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 003749 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM-SLV-TYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGN 406 (798)
Q Consensus 329 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 406 (798)
.+...|..++..+.+.|++++|..+|+++++. .| +.. +|..++..+.+.|++++|+.+|+++.+.... +...|..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~ 173 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVT 173 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHH
Confidence 45668888999999999999999999999885 33 333 7888888888899999999999998876432 4445544
Q ss_pred HHHHHH-hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCc--CHHHHHHHHHHHH
Q 003749 407 IIYAQC-QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG-FSP--SIISYGCLINLYT 482 (798)
Q Consensus 407 l~~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~li~~~~ 482 (798)
.+.... ..|+.++|.++|++.++.. +.+...|..++..+.+.|+.++|+.+|++..... +.| ....|..++..+.
T Consensus 174 ~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~ 252 (308)
T 2ond_A 174 AALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 252 (308)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 433322 3688888888888877753 3456777777777777778888888877777752 233 3556777777777
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 003749 483 KIGKVSKALEVSKVMKSS 500 (798)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~ 500 (798)
+.|+.++|..+++++.+.
T Consensus 253 ~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 253 NIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHSCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777777664
No 233
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=3.8e-13 Score=144.01 Aligned_cols=280 Identities=14% Similarity=0.078 Sum_probs=135.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCChhh
Q 003749 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSL----VTYSIIVGGFAKMGNAEAADHWFEEAKERH-----ATLNAII 403 (798)
Q Consensus 333 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~ 403 (798)
.+..+...+...|++++|+.+|+++++.+.. +. .+|..+...|...|++++|+..|+++.... ......+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445556666777777777777777665322 22 356666667777777777777776665420 0112234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHH
Q 003749 404 YGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF-SPSIISYGCLINLYT 482 (798)
Q Consensus 404 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~ 482 (798)
+..+..+|...|++++|.+.+++..+... ..+. .....++..+..+|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHH
Confidence 44444445555555555555544433200 0000 011234455555555
Q ss_pred HcCC-----------------HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C
Q 003749 483 KIGK-----------------VSKALEVSKVMKSS----GI-KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK-P 539 (798)
Q Consensus 483 ~~g~-----------------~~~A~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~ 539 (798)
..|+ +++|++.+++..+. +. ......+..+...|...|++++|+..|++..+.... .
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 55555555444321 00 001224444445555555555555555544332100 0
Q ss_pred C----HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHH
Q 003749 540 D----VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCI-PTVHTF 614 (798)
Q Consensus 540 ~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~ 614 (798)
+ ..++..+..+|...|++++|+..|++....... .+.. ....++
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------------------------------~~~~~~~~~~~ 306 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE-------------------------------LGEREVEAQSC 306 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH-------------------------------TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH-------------------------------cCCHHHHHHHH
Confidence 0 123444444555555555555555444332100 0000 012344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 615 NALILGLVEKRQMEKAIEILDEMTLAG-----ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE 675 (798)
Q Consensus 615 ~~li~~~~~~~~~~~A~~~~~~m~~~~-----~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~ 675 (798)
..+...|...|++++|...+++..+.. ......++..+..+|...|++++|.++|+++.+.
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 307 YSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 455555556666666666655544320 0011335666667777777777777777777665
No 234
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.50 E-value=4e-14 Score=133.85 Aligned_cols=83 Identities=28% Similarity=0.471 Sum_probs=75.9
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||||||+++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|++. ++..++|+.|.|
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~---~~~~~~g~~l~v 86 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRD-PNTKRSRGFGFVTYATVEEVDAAMNA---RPHKVDGRVVEP 86 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHT---CSCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEc-CCCCCccceEEEEeCCHHHHHHHHhc---CCCEECCEEeee
Confidence 45569999999999999999999999999999999998 88999999999999999999999965 799999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
.++.++.
T Consensus 87 ~~~~~~~ 93 (196)
T 1l3k_A 87 KRAVSRE 93 (196)
T ss_dssp EECCC--
T ss_pred ecccCcc
Confidence 9987664
No 235
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.49 E-value=3.8e-14 Score=130.12 Aligned_cols=81 Identities=22% Similarity=0.461 Sum_probs=75.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||+++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|+. ++..++|+.|.|.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~----~~~~~~g~~i~v~ 76 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKD-PATGRSRGFGFLSFEKPSSVDEVVK----TQHILDGKVIDPK 76 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCC-TTTSSCCSCEEEEESSTHHHHHHHH----SCCEETTEECCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEC-CCCCCccceEEEEEccHHHHHHHHh----cccccCCeEcccc
Confidence 4679999999999999999999999999999999998 8899999999999999999999998 4678999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++.++.
T Consensus 77 ~~~~~~ 82 (167)
T 2cjk_A 77 RAIPRD 82 (167)
T ss_dssp ECCCHH
T ss_pred cccchh
Confidence 887653
No 236
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.49 E-value=3.4e-14 Score=136.71 Aligned_cols=85 Identities=21% Similarity=0.385 Sum_probs=80.0
Q ss_pred cccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
....++|||+||+.++++++|+++|++||.|.++++.++ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~A~~~l--~g~~~~g~~i~ 198 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARD-PTTGKHKGYGFIEYEKAQSSQDAVSSM--NLFDLGGQYLR 198 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCBCSSSBCE
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEec-CCCCCcCceEEEEecCHHHHHHHHHHc--cCCEeCCcEEE
Confidence 345679999999999999999999999999999999998 789999999999999999999999999 99999999999
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|.+++++.
T Consensus 199 V~~a~~~~ 206 (216)
T 2qfj_A 199 VGKAVTPP 206 (216)
T ss_dssp EEECSSCS
T ss_pred EEEecCCC
Confidence 99998764
No 237
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.49 E-value=3.1e-14 Score=134.02 Aligned_cols=78 Identities=19% Similarity=0.329 Sum_probs=71.4
Q ss_pred cccccceeecCCCccC---------chHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCC
Q 003749 148 FRQEGKIFVGNLPNWI---------KKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG 218 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~---------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 218 (798)
..+.++||||||+..+ ++++|+++|++||.|.+|+|+.+ ||||||+|.+.++|..|+++| ||
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-------kG~AFV~F~~~~~Ae~A~~am--~g 201 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-------KNCGFVKFKYQANAEFAKEAM--SN 201 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-------GTEEEEEESSHHHHHHHHHHH--TT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-------CCEEEEEeCCHHHHHHHHHHh--CC
Confidence 3456799999999998 79999999999999999999976 899999999999999999999 99
Q ss_pred eee------------cceeeeeeccccc
Q 003749 219 VEF------------HGRVLTVKLDDGR 234 (798)
Q Consensus 219 ~~~------------~g~~~~v~~~~~~ 234 (798)
..| .|+.|.|+||+..
T Consensus 202 ~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 202 QTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred CEEeccccccccccCCCCEEEEEEccCC
Confidence 999 8999999999765
No 238
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.48 E-value=4.8e-14 Score=130.77 Aligned_cols=81 Identities=15% Similarity=0.274 Sum_probs=73.2
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
...++|||||||+++++++|+++|++||.|.+|++.++ + +|+++|||||+|++.++|.+|+..+ +..++||.|.|
T Consensus 107 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~-~~~~kG~aFVeF~~~e~A~~A~~~~---~~~~~Gr~l~V 181 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT-L-HKAFKGSIFVVFDSIESAKKFVETP---GQKYKETDLLI 181 (193)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEEC-T-TCCEEEEEEEEESSHHHHHHHHHCT---TCEETTEECEE
T ss_pred cccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEEC-C-CCCcccEEEEEECCHHHHHHHHHhC---CCeECCEEEEE
Confidence 34579999999999999999999999999999999987 3 5999999999999999999999865 56999999999
Q ss_pred eccccc
Q 003749 229 KLDDGR 234 (798)
Q Consensus 229 ~~~~~~ 234 (798)
.+++.-
T Consensus 182 ~~~~~y 187 (193)
T 2voo_A 182 LFKDDY 187 (193)
T ss_dssp EETTTC
T ss_pred EEhHHH
Confidence 987654
No 239
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.48 E-value=1.3e-12 Score=141.79 Aligned_cols=193 Identities=10% Similarity=-0.031 Sum_probs=95.1
Q ss_pred CHhhHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDM-HRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (798)
+...+..+...|...|++ ++|++.|+++++.. +.+...|..+..+|.+.|++++|+..|++.++. .|+..++..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 344445555555555555 55555555555542 223445555555555555555555555555543 23345555555
Q ss_pred HHHHhc---------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCC---
Q 003749 374 GGFAKM---------GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT--------RNMERAEALVRDMEEEGID--- 433 (798)
Q Consensus 374 ~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~~~~--- 433 (798)
..|... |++++|+..|+++.+.... +...|..+..+|... |++++|++.|++.++.. +
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcc
Confidence 555555 5555555555555544322 444555555555554 55555555555555432 1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 003749 434 APIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEV 493 (798)
Q Consensus 434 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 493 (798)
.+...|..+..+|...|++++|+..|++..+.... +...+..+..++...|++++|++.
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444455555555555555555555554443211 333444444444444444444443
No 240
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.47 E-value=6.1e-14 Score=134.95 Aligned_cols=86 Identities=24% Similarity=0.411 Sum_probs=76.9
Q ss_pred hcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 147 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
...+.++|||+|||.++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|++.+ ||..++|+.|
T Consensus 24 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~~~~~~g~~l 100 (216)
T 2qfj_A 24 ALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWD-SVTMKHKGFAFVEYEVPEAAQLALEQM--NSVMLGGRNI 100 (216)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC--CC-CCCSEEEEEESSHHHHHHHHHHH--SSCCCC-CCC
T ss_pred ccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeec-CCCCccCceEEEEeCCHHHHHHHHHHc--cCCeeCCeeE
Confidence 3455679999999999999999999999999999999998 788999999999999999999999989 9999999999
Q ss_pred eeecccccc
Q 003749 227 TVKLDDGRR 235 (798)
Q Consensus 227 ~v~~~~~~~ 235 (798)
+|.++....
T Consensus 101 ~v~~~~~~~ 109 (216)
T 2qfj_A 101 KVGRPSNIG 109 (216)
T ss_dssp EEECCSCCG
T ss_pred EEecCCCcc
Confidence 998876654
No 241
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=1.9e-12 Score=134.02 Aligned_cols=276 Identities=15% Similarity=0.113 Sum_probs=163.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CCHHH
Q 003749 438 IYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS----IISYGCLINLYTKIGKVSKALEVSKVMKSS----GIK-HNMKT 508 (798)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~ 508 (798)
.+......+...|++++|+.+|+++.+.... + ...+..+...|...|++++|++.++++.+. +.. .....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3445556666777777777777776665322 2 245566666667777777777766665432 000 01233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 003749 509 YSMLINGFLKLKDWANVFAVFEDVMRDGLK-PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFA 587 (798)
Q Consensus 509 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 587 (798)
+..+...|...|++++|...+++..+.... .+.. ....++..+...|.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYH 134 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHH
Confidence 444444555555555555555544332100 0100 00123444444555
Q ss_pred hcCC--------------------HHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 003749 588 RAGE--------------------MKRALEIFDMMRRS----GCI-PTVHTFNALILGLVEKRQMEKAIEILDEMTLAG- 641 (798)
Q Consensus 588 ~~~~--------------------~~~a~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~- 641 (798)
..|+ +++|...+++..+. +.. .....+..+...+...|++++|...+++..+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5555 55555555554321 100 113456666777778888888888887765421
Q ss_pred ----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-
Q 003749 642 ----ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLE-LD----VFTYEALLKACCKSGRMQSALAVTKEMSAQK- 711 (798)
Q Consensus 642 ----~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 711 (798)
......++..+...+...|++++|.++++++.+.... .+ ..++..+..+|...|++++|..+++++.+..
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 0011236777888888888888888888887654211 11 5567788888889999999999888876431
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003749 712 ----IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (798)
Q Consensus 712 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (798)
......++..+..+|.+.|++++|.+.+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 0111346778889999999999999999988764
No 242
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.46 E-value=8.1e-14 Score=127.86 Aligned_cols=80 Identities=23% Similarity=0.479 Sum_probs=74.1
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++|||||||.++++++|+++|++||.|.++++.++ + +|+++|||||+|.+.++|.+|++.+ ||..+.|+.|+|.++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~-~-~~~~~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMID-K-NNKNVNYAFVEYHQSHDANIALQTL--NGKQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECC-C-C-CCEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEEC-C-CCCCCCEEEEEeCCHHHHHHHHHHc--CCCccCCCeeEEEEc
Confidence 48999999999999999999999999999999987 3 5889999999999999999999999 999999999999998
Q ss_pred cccc
Q 003749 232 DGRR 235 (798)
Q Consensus 232 ~~~~ 235 (798)
.+..
T Consensus 77 ~~~~ 80 (166)
T 3md3_A 77 FQSQ 80 (166)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7664
No 243
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=4.4e-11 Score=121.98 Aligned_cols=218 Identities=9% Similarity=0.031 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCCh-------HHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 003749 313 HRARQTFENMRARGIEPTLHVYTNLIHAYAV-------GRDM-------EEALSCVRKMKE-EGIEMSLVTYSIIVGGFA 377 (798)
Q Consensus 313 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~g~~-------~~A~~~~~~m~~-~g~~~~~~~~~~l~~~~~ 377 (798)
++|+.+|+++++.. +.+...|..++..+.. .|++ ++|+.+|++.++ .. +-+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 67788888888763 4577778877777653 4775 788888888877 32 235667778888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCCHHHH
Q 003749 378 KMGNAEAADHWFEEAKERHATLNAI-IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYT-IIGNEEKC 455 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 455 (798)
+.|++++|+.+|+++++.... +.. +|..++..+.+.|++++|..+|++.++.+ +.+...|...+.... ..|+.++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888775322 333 67777777777777777777777777654 233444443333322 25667777
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSG-IKH--NMKTYSMLINGFLKLKDWANVFAVFEDV 532 (798)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 532 (798)
+.+|++.++... -+...|..++..+.+.|++++|..+|+++.... +.| ....|..++..+.+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777766665422 245566666666666666666666666666642 222 3455666666666666666666666666
Q ss_pred HHc
Q 003749 533 MRD 535 (798)
Q Consensus 533 ~~~ 535 (798)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 244
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=1.5e-11 Score=114.86 Aligned_cols=166 Identities=13% Similarity=0.084 Sum_probs=97.6
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
++..|..+...|.+.|++++|++.|++.++.. +.+..++..+..+|.+.|++++|+..++...... +-+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34556666666666666666666666666653 3355566666666666666666666666665543 224555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (798)
.+...++++.|...+++....... +..++..+..+|.+.|++++|++.|++.++.+ +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 666666666666666666554322 45555555666666666666666666655543 3344555555555555555555
Q ss_pred HHHHHHHHHH
Q 003749 455 CLIVFERLKE 464 (798)
Q Consensus 455 A~~~~~~~~~ 464 (798)
|+..|++.++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555554
No 245
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.45 E-value=1.1e-13 Score=130.75 Aligned_cols=82 Identities=22% Similarity=0.383 Sum_probs=74.1
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||+|||+++++++|+++|++||.|.+|++..+ +.+|+++|||||+|.+.++|.+|+.. +|..++|+.|.|.+
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~A~~~---~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD-RGSGKKRGFAFVTFDDHDSVDKIVIQ---KYHTVNGHNCEVRK 179 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHC---SCCEETTEECEEEE
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeec-CCCCCccceEEEEECCHHHHHHHHHh---CCcEECCEEEEEEe
Confidence 369999999999999999999999999999999998 78999999999999999999999974 69999999999999
Q ss_pred ccccch
Q 003749 231 DDGRRL 236 (798)
Q Consensus 231 ~~~~~~ 236 (798)
+.++..
T Consensus 180 a~~k~~ 185 (196)
T 1l3k_A 180 ALSKQE 185 (196)
T ss_dssp CC----
T ss_pred cCChhH
Confidence 987753
No 246
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.45 E-value=1.1e-13 Score=127.25 Aligned_cols=79 Identities=24% Similarity=0.449 Sum_probs=74.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc--eeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g--~~~~ 227 (798)
..++|||+|||.++++++|+++|++||.|.++++.++ +.+|+++|||||+|.+.++|.+|++.| ||..++| ++|+
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRD-KLTGRPRGVAFVRYNKREEAQEAISAL--NNVIPEGGSQPLS 164 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCCCTTCSSCCE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEc-CCCCCcceEEEEEECCHHHHHHHHHHh--cCCEecCCCeEEE
Confidence 3468999999999999999999999999999999998 778999999999999999999999999 9999988 9999
Q ss_pred eecc
Q 003749 228 VKLD 231 (798)
Q Consensus 228 v~~~ 231 (798)
|++|
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 247
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=5.7e-12 Score=136.71 Aligned_cols=215 Identities=9% Similarity=-0.013 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 003749 522 WANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNM-DRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFD 600 (798)
Q Consensus 522 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 600 (798)
+++++..++....... .+...+..+..+|...|++ ++|+..|++..+.... +...|..+..+|.+.|++++|+..|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555666665554433 3677777788888888888 8888888887776543 56677788888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CChH
Q 003749 601 MMRRSGCIPTVHTFNALILGLVEK---------RQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASL--------GDTG 663 (798)
Q Consensus 601 ~~~~~~~~p~~~~~~~li~~~~~~---------~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~--------g~~~ 663 (798)
++.+.. |+...+..+..+|... |++++|+..|++.++.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 887754 5567777788888888 88888888888887764 44577888888888888 8899
Q ss_pred HHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003749 664 KAFEYFTKLRNEGLE--LDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQ 741 (798)
Q Consensus 664 ~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (798)
+|++.|+++++.... -+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++...|++++|++.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999988886531 378888889999999999999999999888765 56777888888888888888888876655
Q ss_pred H
Q 003749 742 M 742 (798)
Q Consensus 742 m 742 (798)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 4
No 248
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.45 E-value=2e-11 Score=113.99 Aligned_cols=167 Identities=15% Similarity=0.108 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (798)
+..+|..+...|.+.|++++|++.|++.++.. +-+..+|..++.+|.+.|++++|+..++.+...... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 45566777777777777777777777776654 225666777777777777777777777776665332 5556666666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHH
Q 003749 410 AQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSK 489 (798)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 489 (798)
.+...++++.|.+.+.+..+.. +.+..++..+..+|...|++++|++.|++..+.... +..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 6666677777777666666653 334556666666666666666666666666654322 45566666666666666666
Q ss_pred HHHHHHHHHHC
Q 003749 490 ALEVSKVMKSS 500 (798)
Q Consensus 490 A~~~~~~m~~~ 500 (798)
|++.|++.++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 66666666553
No 249
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.44 E-value=1e-11 Score=131.33 Aligned_cols=231 Identities=12% Similarity=0.048 Sum_probs=151.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC------CcccHH
Q 003749 512 LINGFLKLKDWANVFAVFEDVMRD----GLKP-DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP------TSRTFM 580 (798)
Q Consensus 512 ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~ 580 (798)
....+...|++++|+..|++..+. +-.+ ...++..+...|...|++++|+..+.+........ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344455566666666666665542 1011 23456666666777777777776666655431111 123566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 003749 581 PIIHGFARAGEMKRALEIFDMMRRSGCI-P----TVHTFNALILGLVEKRQMEKAIEILDEMTL-----AGISPNEHTYT 650 (798)
Q Consensus 581 ~li~~~~~~~~~~~a~~~~~~~~~~~~~-p----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~~t~~ 650 (798)
.+...|...|++++|+..|+++.+.... . ...++..+..+|...|++++|+..|++..+ ........++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6777777888888888888776643110 1 124677788888888899999888888766 22133456788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003749 651 TIMHGYASLGDTGKAFEYFTKLRNEG----LELDVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRNTFVYNILI 723 (798)
Q Consensus 651 ~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 723 (798)
.+...|.+.|++++|.+.+++..+.. -......+..+...|...|+ +++|+.++++... .+.....+..|.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHHHHH
Confidence 88888999999999999988887541 11122335667788888888 7777777776621 122344677889
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 003749 724 DGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 724 ~~~~~~g~~~~A~~~~~~m~~ 744 (798)
..|...|++++|.+.+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998865
No 250
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.43 E-value=2e-13 Score=125.37 Aligned_cols=79 Identities=23% Similarity=0.473 Sum_probs=73.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee--ee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV--LT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~--~~ 227 (798)
..++|||+|||.++++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+. |+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~~~i~ 163 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGL--NGQKPSGATEPIT 163 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCCCTTCSSCCE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEec-CCCCCccceEEEEeCCHHHHHHHHHHh--cCCccCCCccceE
Confidence 3468999999999999999999999999999999998 778999999999999999999999999 999999976 77
Q ss_pred eecc
Q 003749 228 VKLD 231 (798)
Q Consensus 228 v~~~ 231 (798)
|++|
T Consensus 164 v~~A 167 (167)
T 1fxl_A 164 VKFA 167 (167)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7664
No 251
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=1.6e-11 Score=129.90 Aligned_cols=229 Identities=10% Similarity=0.039 Sum_probs=128.0
Q ss_pred HHHcCChHHHHHHHHHHHHC--CCCCCH--HHHHHHHHH--HHccCChHHHH-----------HHHHHHHHcCCCCC---
Q 003749 306 YARRGDMHRARQTFENMRAR--GIEPTL--HVYTNLIHA--YAVGRDMEEAL-----------SCVRKMKEEGIEMS--- 365 (798)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~--~~~~~~--~~~~~ll~~--~~~~g~~~~A~-----------~~~~~m~~~g~~~~--- 365 (798)
+.+.+++++|..+++++.+. ....|. ..|..++.. ..-.++++.+. ++++.+.......+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 35688999999999998764 222233 333444322 11223333344 55555543210001
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------
Q 003749 366 -LVTYSIIVGGFAKMGNAEAADHWFEEAKER----HATL-NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID------ 433 (798)
Q Consensus 366 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~------ 433 (798)
...+...+..+...|++++|+..|+++... +... ...++..+..+|...|++++|.+.+++..+....
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 112233666777888888888888888653 1111 2356777777778888888888877776653110
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-C
Q 003749 434 APIDIYHMMMDGYTIIGNEEKCLIVFERLKECG----FSP-SIISYGCLINLYTKIGKVSKALEVSKVMKSS----GI-K 503 (798)
Q Consensus 434 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~ 503 (798)
....+++.+..+|...|++++|+..|++..+.. ..+ ...++..+..+|...|++++|++.+++..+. +. .
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 012456666667777777777777766665431 000 1135556666666666666666666666541 11 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 504 HNMKTYSMLINGFLKLKDWANVFAVFEDVMR 534 (798)
Q Consensus 504 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 534 (798)
....++..+...|.+.|++++|...+++..+
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2234555555666666666666666655443
No 252
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.43 E-value=7.4e-14 Score=114.46 Aligned_cols=72 Identities=14% Similarity=0.264 Sum_probs=64.5
Q ss_pred ecCCCccCchHHHHHHh------------cccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc
Q 003749 156 VGNLPNWIKKHLVMEFF------------RQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (798)
Q Consensus 156 v~nl~~~~~~~~l~~~f------------~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g 223 (798)
++||+.++++++|++.| ++||.|.+|+|.++ + +|+++|||||+|.+.++|.+|+..| ||..++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~-~-~~~~~G~~fV~f~~~~~A~~A~~~l--ng~~~~G 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDN-L-GDHLVGNVYVKFRREEDAEKAVIDL--NNRWFNG 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCS-S-SSSSEEEEEEEESCHHHHHHHHHHH--TTCEETT
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeC-C-CCCccEEEEEEECCHHHHHHHHHHH--CCCEECC
Confidence 56788888888777666 99999999999987 3 4899999999999999999999999 9999999
Q ss_pred eeeeeecc
Q 003749 224 RVLTVKLD 231 (798)
Q Consensus 224 ~~~~v~~~ 231 (798)
|+|+|+++
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 99999876
No 253
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.42 E-value=2e-13 Score=112.05 Aligned_cols=85 Identities=19% Similarity=0.229 Sum_probs=71.4
Q ss_pred cccceeecCC--CccCc--------hHHHHHHhcccCcceEEEEecCCCCC--CCCcceEEEEeCChhHHHHHHHhcccC
Q 003749 150 QEGKIFVGNL--PNWIK--------KHLVMEFFRQFGPIKNVILIKGYNNF--EKNVGFGFVIYDGPAAEKSAMKAVEFD 217 (798)
Q Consensus 150 ~~~~~~v~nl--~~~~~--------~~~l~~~f~~~g~v~~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~~~~~ 217 (798)
+++.|.+.|+ +.++. +++|++.|++||.|.+|+|.++ +.+ ++++||+||+|.+.++|.+|+..| |
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~-~~~~~~~~~G~~fV~f~~~~~A~~Ai~~l--n 80 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGL--T 80 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCC-BTTBCCTTTTEEEEEESSHHHHHHHHHHH--T
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEecc-CCCCCcCCcEEEEEEECCHHHHHHHHHHh--C
Confidence 3457888887 33443 3589999999999999999987 443 478999999999999999999999 9
Q ss_pred Ceeecceeeeeecccccchh
Q 003749 218 GVEFHGRVLTVKLDDGRRLK 237 (798)
Q Consensus 218 ~~~~~g~~~~v~~~~~~~~~ 237 (798)
|..++||.|+|.+.......
T Consensus 81 G~~f~GR~i~v~~~~~~~f~ 100 (105)
T 3v4m_A 81 GRKFANRVVVTKYCDPDSYH 100 (105)
T ss_dssp TCEETTEECEEEEECHHHHH
T ss_pred CCEeCCCEEEEEEeCHHHHh
Confidence 99999999999998766543
No 254
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.42 E-value=2.7e-13 Score=125.55 Aligned_cols=79 Identities=23% Similarity=0.425 Sum_probs=72.7
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec---ceee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH---GRVL 226 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~---g~~~ 226 (798)
..++|||+|||.++++++|+++|++||.|.++++.++ + +|+++|||||+|.+.++|.+|++.| ||..+. |++|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~-~-~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~~g~~~~l 169 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG-P-DGLSRGCAFVTFTTRAMAQTAIKAM--HQAQTMEGCSSPM 169 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-T-TSCEEEEEEEEESSHHHHHHHHHHH--TTSCCCTTCSSCC
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC-C-CCCEEEEEEEEECCHHHHHHHHHHh--cCCcccCCCCCCe
Confidence 4568999999999999999999999999999999987 3 5999999999999999999999999 998776 4999
Q ss_pred eeeccc
Q 003749 227 TVKLDD 232 (798)
Q Consensus 227 ~v~~~~ 232 (798)
+|.+|.
T Consensus 170 ~V~~ad 175 (175)
T 3nmr_A 170 VVKFAD 175 (175)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999873
No 255
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.42 E-value=1.8e-13 Score=126.72 Aligned_cols=83 Identities=20% Similarity=0.373 Sum_probs=74.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCC--CCcceEEEEeCChhHHHHHHHhcccCCeeec---ce
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE--KNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH---GR 224 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~---g~ 224 (798)
+.++|||||||+++++++|+++|++||.|.+++++++ +.+| +++|||||+|.+.++|.+|++.+ ||..+. ++
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~~~~~~~~~~~ 78 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRD-RSQNPPQSKGCCFVTFYTRKAALEAQNAL--HNMKVLPGMHH 78 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEE-CSSSSCEEEEEEEEEESSHHHHHHHHHHH--TTTCCCTTCSS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEec-CCCCCCCcceEEEEEECCHHHHHHHHHHh--cCcEEccCCcc
Confidence 4569999999999999999999999999999999998 6676 89999999999999999999999 998776 67
Q ss_pred eeeeecccccc
Q 003749 225 VLTVKLDDGRR 235 (798)
Q Consensus 225 ~~~v~~~~~~~ 235 (798)
.+.+..+....
T Consensus 79 ~~~~~~~~~~~ 89 (175)
T 3nmr_A 79 PIQMKPADSEK 89 (175)
T ss_dssp CCEEEECGGGC
T ss_pred ceEEccccccc
Confidence 78887776553
No 256
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.42 E-value=2.7e-13 Score=125.41 Aligned_cols=77 Identities=18% Similarity=0.307 Sum_probs=71.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||+|||.++++++|+++|++||.|..+ ..+|+++|||||+|.+.++|.+|+..| ||..++|+.|+|+
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~------~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~i~v~ 169 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV------SQDGKSKGIAYIEFKSEADAEKNLEEK--QGAEIDGRSVSLY 169 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE------CSSSSCCSEEEEECSSHHHHHHHHHHH--TEEEETTEEEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe------cCCCCCceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEE
Confidence 45699999999999999999999999988766 357889999999999999999999999 9999999999999
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
+++++
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 99876
No 257
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=5.4e-13 Score=111.91 Aligned_cols=80 Identities=23% Similarity=0.368 Sum_probs=68.4
Q ss_pred ccccceeecCCCccCc-----------hHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccC
Q 003749 149 RQEGKIFVGNLPNWIK-----------KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD 217 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~-----------~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 217 (798)
.+.++|+|.||....+ +++|+++|++||.|.+|.| .+ + .++|||||+|.+.++|.+|+..| |
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~-~---~~~G~afV~f~~~~~A~~Ai~~l--n 85 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FD-R---HPDGVASVSFRDPEEADYCIQTL--D 85 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ET-T---CTTCEEEEECSCHHHHHHHHHHS--T
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ec-C---CCCEEEEEEECCHHHHHHHHHHc--C
Confidence 4456999999943322 5799999999999999966 45 2 37999999999999999999999 9
Q ss_pred Ceeecceeeeeecccccc
Q 003749 218 GVEFHGRVLTVKLDDGRR 235 (798)
Q Consensus 218 ~~~~~g~~~~v~~~~~~~ 235 (798)
|..++||+|+|.++.++.
T Consensus 86 g~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp TCEETTEECEEEECCSCC
T ss_pred CCEECCcEEEEEEeCCCC
Confidence 999999999999998764
No 258
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=1.8e-12 Score=132.65 Aligned_cols=170 Identities=13% Similarity=0.045 Sum_probs=129.0
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc------C
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRAR-------GIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE------G 361 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------g 361 (798)
+...+..+...|...|++++|+.+|+++.+. .......++..+...|...|++++|+..|+++++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456788899999999999999999999883 22334567888999999999999999999998764 1
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---
Q 003749 362 I-EMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER------HA-TLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE--- 430 (798)
Q Consensus 362 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--- 430 (798)
- .....++..++..|...|++++|+..|+++... +. .....++..+..+|...|++++|.++++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 224667888999999999999999999988764 11 223456777788888888888888888887764
Q ss_pred ---CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 431 ---GI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKE 464 (798)
Q Consensus 431 ---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (798)
+. .....++..+..+|...|++++|+.+|+++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 11234567777777778888888877777765
No 259
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.40 E-value=3.8e-13 Score=135.09 Aligned_cols=82 Identities=24% Similarity=0.455 Sum_probs=74.8
Q ss_pred cccccceeecCCCccCchHHHH----HHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVM----EFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g 223 (798)
.++.++|||||||+++++++|+ ++|++||.|.+|++.+ +|+++|||||+|.+.++|.+|++.| ||..|.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~----~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g 79 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR----SLKMRGQAFVIFKEVSSATNALRSM--QGFPFYD 79 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC----CCCcceEEEEEECCHHHHHHHHHHh--cCCeeCC
Confidence 3456799999999999999977 8999999999999875 5889999999999999999999999 9999999
Q ss_pred eeeeeecccccc
Q 003749 224 RVLTVKLDDGRR 235 (798)
Q Consensus 224 ~~~~v~~~~~~~ 235 (798)
+.|+|.+++...
T Consensus 80 ~~l~v~~a~~~~ 91 (282)
T 3pgw_A 80 KPMRIQYAKTDS 91 (282)
T ss_pred cEEEEEEeccCc
Confidence 999999996654
No 260
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=1.6e-12 Score=132.94 Aligned_cols=170 Identities=17% Similarity=0.115 Sum_probs=130.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------C
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEE-------GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER------H 396 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~ 396 (798)
+..++..+...|...|++++|+.+|+++.+. .......++..++..|...|++++|+..|+++... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4557888999999999999999999999873 22335677899999999999999999999998764 1
Q ss_pred -CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 003749 397 -ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE------GI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC--- 465 (798)
Q Consensus 397 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 465 (798)
......++..+..+|...|++++|.+.++++.+. +. .....++..+...|...|++++|+.+|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1224567788888899999999999999888764 11 123456777788888888888888888887664
Q ss_pred ---CCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 466 ---GFSP-SIISYGCLINLYTKIGKVSKALEVSKVMKS 499 (798)
Q Consensus 466 ---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (798)
+..+ ...++..+..+|...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 245677777888888888888888877765
No 261
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.37 E-value=9.2e-13 Score=129.94 Aligned_cols=79 Identities=25% Similarity=0.508 Sum_probs=73.1
Q ss_pred hcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 147 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
...+.++|||||||+++|+++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|+..+ ||..++|+.|
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-------kg~afV~f~~~~~A~~A~~~l--~g~~i~g~~l 88 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-------RGFGFIRLESRTLAEIAKAEL--DGTILKSRPL 88 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-------TTEEEEECSSHHHHHHHHHHH--TTCEETTEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-------CcEEEEEECCHHHHHHHHHHc--CCcEECCcee
Confidence 4456679999999999999999999999999999999776 899999999999999999989 9999999999
Q ss_pred eeeccccc
Q 003749 227 TVKLDDGR 234 (798)
Q Consensus 227 ~v~~~~~~ 234 (798)
+|.++.+.
T Consensus 89 ~v~~a~~~ 96 (261)
T 3sde_A 89 RIRFATHG 96 (261)
T ss_dssp EEEECCCS
T ss_pred EeeecccC
Confidence 99998753
No 262
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.37 E-value=1.8e-13 Score=126.50 Aligned_cols=82 Identities=16% Similarity=0.276 Sum_probs=73.2
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
++.++|||||||.++++++|+++|++||.+.. .++.+ ..+|+++|||||+|.+.++|.+|++ + ||..+.|+.|+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~-~~~~~~~g~afV~f~~~~~a~~A~~-l--~g~~~~g~~l~v 85 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVD-VRTGTNRKFGYVDFESAEDLEKALE-L--TGLKVFGNEIKL 85 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCE-EEEETTTTEEEEEESSHHHHHHHHH-G--GGEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEE-CCCCccccEEEEEECCHHHHHHHHh-c--CCCEeCCeEEEE
Confidence 45679999999999999999999999999887 34445 5789999999999999999999994 8 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
.++.++.
T Consensus 86 ~~~~~~~ 92 (175)
T 1fje_B 86 EKPKGRD 92 (175)
T ss_dssp ECCCCSS
T ss_pred ecCCCcc
Confidence 9998764
No 263
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.37 E-value=4.8e-13 Score=111.73 Aligned_cols=86 Identities=21% Similarity=0.278 Sum_probs=72.7
Q ss_pred ccccceeecCCC--ccC---chHHHHHHhcccCcceEEEEecCCCC---CCCCcceEEEEeCChhHHHHHHHhcccCCee
Q 003749 149 RQEGKIFVGNLP--NWI---KKHLVMEFFRQFGPIKNVILIKGYNN---FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE 220 (798)
Q Consensus 149 ~~~~~~~v~nl~--~~~---~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~ 220 (798)
.+++.|++.|+- .++ -+++|++.|++||.|.+|+|.+++.. +++++||+||+|.+.++|.+|+..| ||..
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~L--nGr~ 95 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL--NGRW 95 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHH--TTCE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHH--CCCE
Confidence 456789999983 222 24789999999999999999988321 5678899999999999999999999 9999
Q ss_pred ecceeeeeecccccch
Q 003749 221 FHGRVLTVKLDDGRRL 236 (798)
Q Consensus 221 ~~g~~~~v~~~~~~~~ 236 (798)
++||.|+|.++....+
T Consensus 96 f~GR~i~v~~~~~~~f 111 (118)
T 3ue2_A 96 FAGRKVVAEVYDQERF 111 (118)
T ss_dssp ETTEECEEEEECHHHH
T ss_pred ECCcEEEEEEcChHhc
Confidence 9999999999866543
No 264
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.37 E-value=9.1e-13 Score=127.20 Aligned_cols=78 Identities=17% Similarity=0.335 Sum_probs=72.5
Q ss_pred ccccceeecCCCc-cCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 149 RQEGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 149 ~~~~~~~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
.++++|||||||+ ++++++|+++|++||.|.+|++.++ + +|||||+|.+.++|.+|++.+ ||..+.|+.|+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~-~-----~g~afV~F~~~~~A~~Ai~~l--~g~~~~g~~l~ 103 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN-K-----KENALVQMADGNQAQLAMSHL--NGHKLHGKPIR 103 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCT-T-----SCCEEEEESCHHHHHHHHHHH--TTCBCSSSBCE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEEC-C-----CCEEEEEECCHHHHHHHHHHh--CCCeECCeEEE
Confidence 4456999999999 9999999999999999999999987 2 799999999999999999999 99999999999
Q ss_pred eeccccc
Q 003749 228 VKLDDGR 234 (798)
Q Consensus 228 v~~~~~~ 234 (798)
|.+++..
T Consensus 104 v~~a~~~ 110 (229)
T 2adc_A 104 ITLSKHQ 110 (229)
T ss_dssp EECCSCC
T ss_pred EEEecCc
Confidence 9998755
No 265
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.37 E-value=6.7e-13 Score=134.03 Aligned_cols=82 Identities=21% Similarity=0.404 Sum_probs=74.9
Q ss_pred ccccceeecCCCcc-CchHHHHHHhcccCcceEEEEecCCCC-CCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 149 RQEGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNN-FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 149 ~~~~~~~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
...++|||+|||.+ +++++|+++|++||.|.+|++.++ .. ||+++|||||+|.+.++|.+|+ .| ||..|+|+.|
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~tg~~~g~afV~F~~~~~A~~A~-~l--~g~~~~g~~i 283 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAG-QKEHSFNNCCAFMVFENKDSAERAL-QM--NRSLLGNREI 283 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSC-CC---CCCEEEEEEESSHHHHHHHG-GG--TTEEETTEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEec-CCcCCCCceEEEEEeCCHHHHHHHH-Hh--cCCEECCcEE
Confidence 34569999999999 999999999999999999999987 44 6999999999999999999999 99 9999999999
Q ss_pred eeeccccc
Q 003749 227 TVKLDDGR 234 (798)
Q Consensus 227 ~v~~~~~~ 234 (798)
+|.+++++
T Consensus 284 ~V~~a~~k 291 (292)
T 2ghp_A 284 SVSLADKK 291 (292)
T ss_dssp EEEECCCC
T ss_pred EEEEecCC
Confidence 99999875
No 266
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.36 E-value=1.2e-12 Score=131.58 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=77.8
Q ss_pred cccceeecCCCccC-chHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 150 QEGKIFVGNLPNWI-KKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 150 ~~~~~~v~nl~~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
..++|||+|||.++ ++++|+++|++||.|.++++..+ . +|+++|||||+|.+.++|.+|+..| ||..++|+.|+|
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~-~-~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v 258 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG-Q-DGQLKGFAVLEYETAEMAEEAQQQA--DGLSLGGSHLRV 258 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC-S-SCCEEEEEEEECSSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC-C-CCCcccEEEEEeCCHHHHHHHHHHh--CCCccCCeEEEE
Confidence 45689999999995 99999999999999999999987 3 7999999999999999999999999 999999999999
Q ss_pred ecccccchh
Q 003749 229 KLDDGRRLK 237 (798)
Q Consensus 229 ~~~~~~~~~ 237 (798)
.+++++...
T Consensus 259 ~~a~~~~~~ 267 (284)
T 3smz_A 259 SFCAPGPPG 267 (284)
T ss_dssp EECCSSSCH
T ss_pred EEecCCCcc
Confidence 999887643
No 267
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.35 E-value=7.7e-13 Score=124.25 Aligned_cols=77 Identities=14% Similarity=0.219 Sum_probs=68.9
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcc--eEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecce---
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPI--KNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR--- 224 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v--~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~--- 224 (798)
+.++|||+|||+++++++|+++|++||.| .++++..+ + |+++|||||+|++.++|.+|+..| ||..|+|+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~-~--~~~~g~gfV~f~~~~~A~~Ai~~l--ng~~~~g~~~~ 196 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSG-K--SERSSSGLLEWDSKSDALETLGFL--NHYQMKNPNGP 196 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSC-C--SSSSEEEEEECSSHHHHHHHHHHH--TTCEECCSSSS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcC-C--CCCceEEEEEeCCHHHHHHHHHHh--CCCCccCCCCC
Confidence 45689999999999999999999999999 89999877 3 566799999999999999999999 99999988
Q ss_pred -eeeeecc
Q 003749 225 -VLTVKLD 231 (798)
Q Consensus 225 -~~~v~~~ 231 (798)
++.|+++
T Consensus 197 ~p~~vk~~ 204 (205)
T 3tyt_A 197 YPYTLKLC 204 (205)
T ss_dssp SCEECEEE
T ss_pred cceEEEec
Confidence 4666664
No 268
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.35 E-value=1.5e-12 Score=130.84 Aligned_cols=83 Identities=23% Similarity=0.394 Sum_probs=78.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||+|||+++++++|+++|++||.|.+++++.+ +.+|+++|||||+|.+.++|.+|+..+ ||..++|+.|.|.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~i~v~ 170 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYS-ERTGQSKGYGFAEYMKKDSAARAKSDL--LGKPLGPRTLYVH 170 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEee-CCCCccceEEEEEECCHHHHHHHHHHh--CCCEeCCcEEEEE
Confidence 4568999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++.+..
T Consensus 171 ~a~~~~ 176 (284)
T 3smz_A 171 WTDAGQ 176 (284)
T ss_dssp ECCGGG
T ss_pred ECCCCC
Confidence 997764
No 269
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=9.6e-11 Score=123.50 Aligned_cols=230 Identities=8% Similarity=0.008 Sum_probs=155.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC------CCcccHH
Q 003749 512 LINGFLKLKDWANVFAVFEDVMRDGLK-P----DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR------PTSRTFM 580 (798)
Q Consensus 512 ll~~~~~~~~~~~a~~~~~~~~~~g~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~ 580 (798)
....+...|++++|+..|++..+.... . ...++..+...|...|++++|+..+.+....... ....++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 334455667777777777766543110 1 2345666777777777777777777766543111 0134556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 003749 581 PIIHGFARAGEMKRALEIFDMMRRS----GCI-PTVHTFNALILGLVEKRQMEKAIEILDEMTL-----AGISPNEHTYT 650 (798)
Q Consensus 581 ~li~~~~~~~~~~~a~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~~t~~ 650 (798)
.+..+|...|++++|+..|.++.+. +.. ....+++.+..+|...|++++|+..|++..+ .. .....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 6777788888888888888777643 111 1234667778888889999999999888776 33 22367788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003749 651 TIMHGYASLGDTGKAFEYFTKLRNEGL----ELDVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRNTFVYNILI 723 (798)
Q Consensus 651 ~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 723 (798)
.+...|.+.|++++|..++++..+... ......+..+...|...|+ +++|+.++++... .+.....+..++
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la 343 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHHH
Confidence 888999999999999999999887522 2224455666667777777 7777777776321 112234667889
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 003749 724 DGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 724 ~~~~~~g~~~~A~~~~~~m~~ 744 (798)
..|...|++++|.+.+++..+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998865
No 270
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=1.7e-10 Score=121.56 Aligned_cols=236 Identities=13% Similarity=0.020 Sum_probs=121.3
Q ss_pred hHHHHHHHH--HHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHH--HHccCChHHHH---------HHHHHHHHc
Q 003749 298 EFGLMVNYY--ARRGDMHRARQTFENMRAR--GIEPT--LHVYTNLIHA--YAVGRDMEEAL---------SCVRKMKEE 360 (798)
Q Consensus 298 ~~~~li~~~--~~~g~~~~A~~~~~~~~~~--~~~~~--~~~~~~ll~~--~~~~g~~~~A~---------~~~~~m~~~ 360 (798)
.-..|-.+| ...+++++|.++++++.+. ...-| ...|-.++.. ..-.+.+..+. +.++.+...
T Consensus 12 v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 91 (378)
T 3q15_A 12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP 91 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc
Confidence 334444566 6788999999999987663 11122 3333444332 11112222222 444444321
Q ss_pred CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 361 GIEMS----LVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT-L----NAIIYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (798)
Q Consensus 361 g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 431 (798)
....+ ...|...+..+...|++++|+..|+++...-.. . ...++..+..+|...|++++|...+++..+..
T Consensus 92 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 92 QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY 171 (378)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 10001 112334455566778888888888777653110 1 23456666777777777777777776665421
Q ss_pred C--C----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 003749 432 I--D----APIDIYHMMMDGYTIIGNEEKCLIVFERLKEC----GFS-PSIISYGCLINLYTKIGKVSKALEVSKVMKS- 499 (798)
Q Consensus 432 ~--~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 499 (798)
. . ....+++.+..+|...|++++|++.|++..+. +.. ....++..+..+|...|++++|++.|++..+
T Consensus 172 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 172 QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 0 0 01334556666666666666666666665542 110 0123455555566666666666666655554
Q ss_pred ----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 500 ----SGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMR 534 (798)
Q Consensus 500 ----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 534 (798)
.. .....++..+...|.+.|++++|...+++..+
T Consensus 252 ~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 252 SREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 21 11234444555555555555555555555444
No 271
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.33 E-value=1.1e-12 Score=124.03 Aligned_cols=76 Identities=17% Similarity=0.351 Sum_probs=71.3
Q ss_pred ccceeecCCCc-cCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 151 EGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 151 ~~~~~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+++|||||||+ ++++++|+++|++||.|.+|+++++ + +|||||+|.+.++|.+|++.+ ||..++|+.|+|.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~-~-----~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~l~v~ 74 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN-K-----KENALVQMADGNQAQLAMSHL--NGHKLHGKPIRIT 74 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTT-C-----SSCCEEECTTTHHHHHHHHHH--TTCCCSSCCCEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeC-C-----CCEEEEEECCHHHHHHHHHHh--CCCeecCeEEEEE
Confidence 46999999999 9999999999999999999999987 2 799999999999999999999 9999999999999
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
+++..
T Consensus 75 ~a~~~ 79 (198)
T 1qm9_A 75 LSKHQ 79 (198)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98755
No 272
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.31 E-value=7.6e-10 Score=116.41 Aligned_cols=234 Identities=10% Similarity=-0.006 Sum_probs=140.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCC----HHHHH
Q 003749 300 GLMVNYYARRGDMHRARQTFENMRARGIEPTLH----VYTNLIHAYAVGRDMEEALSCVRKMKEEGI-EMS----LVTYS 370 (798)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~ 370 (798)
..+...+...|++++|+..+++.....-..+.. +++.+...|...|++++|...+++..+..- ..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344556778899999999999988764222222 456667778888999999999988765310 012 23356
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC----CC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----ChhhH
Q 003749 371 IIVGGFAKMGNAEAADHWFEEAKERH----AT--L-NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA----PIDIY 439 (798)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~ 439 (798)
.+...+...|++++|+..|++..... .. + ...++..+..+|...|++++|.+.+++..+..... ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 77778888888888888888876531 11 1 23455567777778888888888887776643211 12345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHH
Q 003749 440 HMMMDGYTIIGNEEKCLIVFERLKECGFSPS-IISYG-----CLINLYTKIGKVSKALEVSKVMKSSGIKH---NMKTYS 510 (798)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~ 510 (798)
..+...+...|++++|...+++........+ ...+. .++..+...|++++|...+++........ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 6666677777777777777776654311111 01111 12233556666666666666655432111 012334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 003749 511 MLINGFLKLKDWANVFAVFEDVM 533 (798)
Q Consensus 511 ~ll~~~~~~~~~~~a~~~~~~~~ 533 (798)
.+...+...|++++|...++...
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555555555555443
No 273
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.31 E-value=7.1e-11 Score=133.13 Aligned_cols=166 Identities=14% Similarity=0.078 Sum_probs=149.0
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
+...|+.|...|.+.|++++|++.|+++++.. +.+..+|+.+..+|.+.|++++|++.|++.++.+ +-+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45678999999999999999999999999974 4467889999999999999999999999999875 336889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (798)
+|.+.|++++|++.|+++++.+.. +..+|..+..+|.+.|++++|++.|++.++.. +.+...|..++.+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999999987544 78899999999999999999999999999975 4567889999999999999999
Q ss_pred HHHHHHHHHH
Q 003749 455 CLIVFERLKE 464 (798)
Q Consensus 455 A~~~~~~~~~ 464 (798)
|.+.|+++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988865
No 274
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.30 E-value=3.8e-12 Score=117.32 Aligned_cols=76 Identities=28% Similarity=0.553 Sum_probs=67.5
Q ss_pred ccccceeecCCCccCchHHHHHHhccc----C-------cceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccC
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQF----G-------PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD 217 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 217 (798)
++.++|||||||+++++++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .+ |
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-------~g~afV~f~~~~~A~~A~-~~--~ 71 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-------KNFAFLEFRSVDETTQAM-AF--D 71 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-------TTEEEEEESSHHHHHHHG-GG--T
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-------CCEEEEEeCCHHHHHHHH-Hh--C
Confidence 456799999999999999999999999 5 6666666544 899999999999999999 78 9
Q ss_pred Ceeecceeeeeeccccc
Q 003749 218 GVEFHGRVLTVKLDDGR 234 (798)
Q Consensus 218 ~~~~~g~~~~v~~~~~~ 234 (798)
|..++|+.|+|.++...
T Consensus 72 ~~~~~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 72 GIIFQGQSLKIRRPHDY 88 (172)
T ss_dssp TCEETTEECEEECCSSC
T ss_pred CcEecCceeeecCCccc
Confidence 99999999999988655
No 275
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.29 E-value=1.1e-10 Score=131.76 Aligned_cols=167 Identities=16% Similarity=0.027 Sum_probs=150.1
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 003749 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNII 408 (798)
Q Consensus 329 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 408 (798)
.+..+|+.|..+|.+.|++++|++.|++.++.. +-+..+|+.+..+|.+.|++++|++.|+++++.+.. +..+|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 356789999999999999999999999999874 336889999999999999999999999999988544 788999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHH
Q 003749 409 YAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVS 488 (798)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 488 (798)
.+|.+.|++++|++.|++.++.+ +.+..+|+.+..+|...|++++|+..|++.++.... +...|..+..+|...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 99999999999999999999975 456889999999999999999999999999987433 6788999999999999999
Q ss_pred HHHHHHHHHHH
Q 003749 489 KALEVSKVMKS 499 (798)
Q Consensus 489 ~A~~~~~~m~~ 499 (798)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888765
No 276
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=2.3e-10 Score=106.50 Aligned_cols=164 Identities=12% Similarity=0.053 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
..|..+...+...|++++|+..|+++.+.. ..+..++..+...|...|++++|+..++++.+.. +.+..++..++..|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345566677777778888887777776653 3456667777777777777777777777777653 33566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 003749 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCL 456 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 456 (798)
...|++++|++.|+++..... .+...+..++.+|...|++++|.+.++++.+.. +.+..++..++..|...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777777766532 255666666666677777777777776666653 334555666666666666666666
Q ss_pred HHHHHHHH
Q 003749 457 IVFERLKE 464 (798)
Q Consensus 457 ~~~~~~~~ 464 (798)
..+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 277
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.29 E-value=9.6e-10 Score=115.64 Aligned_cols=165 Identities=8% Similarity=-0.108 Sum_probs=95.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----hhhHH
Q 003749 335 TNLIHAYAVGRDMEEALSCVRKMKEEGIEMSL----VTYSIIVGGFAKMGNAEAADHWFEEAKERHAT-LN----AIIYG 405 (798)
Q Consensus 335 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~ 405 (798)
..+...+...|++++|+..+++.+......+. .+++.+...|...|++++|+..+++....... .+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33445566778888888888887765322222 24566677777888888888888877653111 01 12345
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC----CC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----cCHHHH
Q 003749 406 NIIYAQCQTRNMERAEALVRDMEEEG----ID--A-PIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFS----PSIISY 474 (798)
Q Consensus 406 ~l~~~~~~~g~~~~A~~~~~~m~~~~----~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~ 474 (798)
.+..++...|++++|.+.+++..+.. .. + ....+..+...|...|++++|...+++..+.... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 56666777777777777776665421 11 1 1234445556666666666666666665543211 012345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 475 GCLINLYTKIGKVSKALEVSKVMKS 499 (798)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~ 499 (798)
..+...+...|++++|...+++...
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555556666666666666655543
No 278
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.28 E-value=4.8e-12 Score=122.14 Aligned_cols=78 Identities=10% Similarity=0.217 Sum_probs=71.9
Q ss_pred ccccceeecCCCccCchHHHHHHhcccC-cceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec-ceee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GRVL 226 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~-g~~~ 226 (798)
.+.++|||+|||.++++++|+++|++|| .|.+++++.+ ++|||||+|.+.++|.+|+..| ||..++ |+.|
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~l--~g~~~~~g~~l 220 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK------DRKMALIQMGSVEEAVQALIDL--HNHDLGENHHL 220 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS------STTCEEEEESSHHHHHHHHHHH--TTCBSSSSCBC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC------CCcEEEEEECCHHHHHHHHHHH--CCCccCCCCeE
Confidence 3457999999999999999999999999 9999999753 2799999999999999999999 999999 9999
Q ss_pred eeeccccc
Q 003749 227 TVKLDDGR 234 (798)
Q Consensus 227 ~v~~~~~~ 234 (798)
+|.+++++
T Consensus 221 ~v~~a~~~ 228 (229)
T 2adc_A 221 RVSFSKST 228 (229)
T ss_dssp EEEECSSC
T ss_pred EEEEecCC
Confidence 99999875
No 279
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.28 E-value=3.5e-12 Score=120.45 Aligned_cols=77 Identities=10% Similarity=0.223 Sum_probs=71.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccC-cceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec-ceeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GRVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~-g~~~~ 227 (798)
+.++|||+|||.++++++|+++|++|| .|.+++++.+ .+|||||+|.+.++|.+|+..| ||..++ |+.|+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~------~~g~afV~f~~~~~A~~A~~~l--~g~~~~~g~~l~ 190 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK------DRKMALIQMGSVEEAVQALIDL--HNHDLGENHHLR 190 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST------TSSCEEEECSSHHHHHHHHHHH--TSSCCSSCCSCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHh--cCCccCCCCeEE
Confidence 346999999999999999999999999 9999999764 2799999999999999999999 999999 99999
Q ss_pred eeccccc
Q 003749 228 VKLDDGR 234 (798)
Q Consensus 228 v~~~~~~ 234 (798)
|.+++++
T Consensus 191 v~~a~~~ 197 (198)
T 1qm9_A 191 VSFSKST 197 (198)
T ss_dssp EEEECCC
T ss_pred EEeeccc
Confidence 9999765
No 280
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=7.4e-12 Score=100.83 Aligned_cols=65 Identities=18% Similarity=0.337 Sum_probs=57.7
Q ss_pred ccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecccccc
Q 003749 161 NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235 (798)
Q Consensus 161 ~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~~~~~ 235 (798)
.++++++|+++|++||.|.+|+|+ ++++|||||+|++.++|..|++.+ ++ +.|++|+|++++++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~------~~~rGfaFVeF~~~~~A~~Ai~~~--~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS------SKKPGTAVVEFATVKAAELAVQNE--VG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE------SSSSSEEEEEESCHHHHHHHHHTC--CB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc------cCCCCEEEEEECCHHHHHHHHHhc--CC--CCCCeEEEEEccCCC
Confidence 578999999999999999999997 356999999999999999999865 44 679999999997764
No 281
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.27 E-value=3.7e-10 Score=105.14 Aligned_cols=163 Identities=11% Similarity=0.071 Sum_probs=91.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003749 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412 (798)
Q Consensus 333 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (798)
.+..+...+...|++++|+..|+++.+.. +.+..++..++..|...|++++|+..|+++..... .+..++..++.+|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 45555566666666666666666665542 22555666666666666666666666666665432 24555555566666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 003749 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALE 492 (798)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 492 (798)
..|++++|.+.++++.+.. +.+..++..+...|...|++++|..+|+++.+... .+..++..+..+|...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666655543 23444555555555555555555555555554421 134445555555555555555555
Q ss_pred HHHHHHH
Q 003749 493 VSKVMKS 499 (798)
Q Consensus 493 ~~~~m~~ 499 (798)
.++++.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 282
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.26 E-value=4.9e-12 Score=124.71 Aligned_cols=83 Identities=20% Similarity=0.370 Sum_probs=74.4
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec----ce
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH----GR 224 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~----g~ 224 (798)
.+.++|||+|||+.+++++|+++|++||.|.+|+++.| .+|+++|||||+|.+.++|.+|+..| |+..+. ||
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A~~~l--~~~~~~~~~~~r 169 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD--DRGRATGKGFVEFAAKPPARKALERC--GDGAFLLTTTPR 169 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE--TTSCEEEEEEEEESSHHHHHHHHHHH--HHSCEESSSSCC
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC--CCCCcCcEEEEEeCCHHHHHHHHHHh--cCCeEEecCCCc
Confidence 45679999999999999999999999999999999998 48999999999999999999999988 654443 99
Q ss_pred eeeeecccccc
Q 003749 225 VLTVKLDDGRR 235 (798)
Q Consensus 225 ~~~v~~~~~~~ 235 (798)
+|.|.++.+..
T Consensus 170 ~i~v~~~~~~~ 180 (261)
T 3sde_A 170 PVIVEPMEQFD 180 (261)
T ss_dssp BCEEEECCCEE
T ss_pred eEEEeeccccC
Confidence 99999987653
No 283
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.26 E-value=8.8e-12 Score=117.85 Aligned_cols=75 Identities=25% Similarity=0.503 Sum_probs=65.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCc-----------ceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCC
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGP-----------IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG 218 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~-----------v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 218 (798)
..++|||||||+++++++|+++|++||. |.++.+ ++++|||||+|.+.++|.+|+ .+ ||
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-------~~~~g~afV~F~~~~~A~~Al-~l--~g 72 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-------NQDKNFAFLEFRSVDETTQAM-AF--DG 72 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-------ETTTTEEEEEESCSHHHHHHG-GG--TT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-------cCCCCEEEEEeCCHHHHHHHH-Hh--cC
Confidence 4579999999999999999999999954 444444 455999999999999999999 78 99
Q ss_pred eeecceeeeeeccccc
Q 003749 219 VEFHGRVLTVKLDDGR 234 (798)
Q Consensus 219 ~~~~g~~~~v~~~~~~ 234 (798)
..++|+.|+|.++...
T Consensus 73 ~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 73 IIFQGQSLKIRRPHDY 88 (198)
T ss_dssp EEETTEEEEEECCCCC
T ss_pred CEEcCceEEEeCCCCC
Confidence 9999999999998665
No 284
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.25 E-value=6e-10 Score=107.95 Aligned_cols=206 Identities=13% Similarity=-0.030 Sum_probs=159.5
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
++..+..+...|...|++++|+..|+++++....++...+..+..+|.+.|++++|+..|++.++.. +-+..+|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 5677888899999999999999999999997533677888889999999999999999999999874 336788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNA-------IIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA--PIDIYHMMMDG 445 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~l~~~ 445 (798)
+|.+.|++++|+..|+++.+.... +. .+|..+..++...|++++|++.|++.++.+ +. +...|..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHH
Confidence 999999999999999999987543 45 568888899999999999999999999864 33 35778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003749 446 YTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSML 512 (798)
Q Consensus 446 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 512 (798)
|...|+ .+++++...+.. +...|..+. ....+.+++|+..|++..+.. +.+..+...+
T Consensus 163 ~~~~~~-----~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l 220 (228)
T 4i17_A 163 FYNNGA-----DVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ 220 (228)
T ss_dssp HHHHHH-----HHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHH-----HHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 865543 445555544322 334443333 344567899999999999864 2244444443
No 285
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.24 E-value=7.5e-12 Score=126.30 Aligned_cols=84 Identities=11% Similarity=0.224 Sum_probs=71.9
Q ss_pred ccccceeecCCCccCchHHHHHHhcccC-cceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
...++|||+|||+++++++|+++|++|| .|.+|+++.+ +. |+++|||||+|.+.++|.+|+..| ||..++|+.|.
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-~~-~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~ 190 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSL-RF-NTSRRFAYIDVTSKEDARYCVEKL--NGLKIEGYTLV 190 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC---------CCEEEEECSSHHHHHHHHHHH--TTCEETTEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeC-CC-CCcceEEEEEECCHHHHHHHHHHh--CCCEeCCcEEE
Confidence 4577999999999999999999999999 9999999987 33 889999999999999999999999 99999999999
Q ss_pred eecccccch
Q 003749 228 VKLDDGRRL 236 (798)
Q Consensus 228 v~~~~~~~~ 236 (798)
|.++.+...
T Consensus 191 v~~a~~~~~ 199 (292)
T 2ghp_A 191 TKVSNPLEK 199 (292)
T ss_dssp EEECCCC--
T ss_pred EEECCCCcc
Confidence 999987653
No 286
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.23 E-value=1.2e-11 Score=123.35 Aligned_cols=75 Identities=17% Similarity=0.347 Sum_probs=64.8
Q ss_pred ccccceeecC--CCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec---c
Q 003749 149 RQEGKIFVGN--LPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH---G 223 (798)
Q Consensus 149 ~~~~~~~v~n--l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~---g 223 (798)
.++.+||||| |++.+|+++|+++|++||.|++|.+..+ ||||||+|++.++|++|++.| ||..+. |
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~-------kgfaFV~f~~~~~A~~Ai~~l--nG~~~~~~~g 86 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-------KPYSFARYRTTEESKRAYVTL--NGKEVVDDLG 86 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT-------CSEEEEEESSHHHHHHHHHHT--TTCEEECTTS
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-------CCEEEEEECCHHHHHHHHHHh--CCCccccccC
Confidence 3456999999 5889999999999999999999887643 899999999999999999999 999883 4
Q ss_pred e--eeeeeccc
Q 003749 224 R--VLTVKLDD 232 (798)
Q Consensus 224 ~--~~~v~~~~ 232 (798)
+ .+.|.+..
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 5 57777764
No 287
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.22 E-value=1.4e-09 Score=105.32 Aligned_cols=196 Identities=12% Similarity=0.002 Sum_probs=129.5
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 003749 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNII 408 (798)
Q Consensus 329 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 408 (798)
.|...+..+...+.+.|++++|+..|++.++.....+...+..++.+|.+.|++++|++.|++..+.+.. +..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567778888888888888888888888887653257777777888888888888888888888876433 667778888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHH
Q 003749 409 YAQCQTRNMERAEALVRDMEEEGIDAPI-------DIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS---IISYGCLI 478 (798)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li 478 (798)
.+|...|++++|++.+++.++.. +.+. .+|..+...+...|++++|+..|++..+. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 88888888888888888888764 2334 44666677777777777777777777664 233 34555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003749 479 NLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDG 536 (798)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 536 (798)
.+|...| ..+++++...+ ..+...+..+. ....+.+++|+..|++..+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 6664433 33344444332 12233333222 222344666666666666543
No 288
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.19 E-value=2e-10 Score=115.37 Aligned_cols=226 Identities=11% Similarity=-0.042 Sum_probs=141.9
Q ss_pred cCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc------CC-CCCHHHHHHHHH
Q 003749 309 RGDMHRARQTFENMRA-------RGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE------GI-EMSLVTYSIIVG 374 (798)
Q Consensus 309 ~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------g~-~~~~~~~~~l~~ 374 (798)
.|++++|+.+|++..+ ........++..+...|...|++++|+..|+++++. +- +....++..++.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4555555555555444 221223556777888888888888888888887754 11 223557788888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC-------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------C-CCCChhhHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERH-------ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE------G-IDAPIDIYH 440 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~ 440 (798)
.|...|++++|++.|+++.... ......++..+..+|...|++++|.+.++++.+. + ......++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 8888888888888888876541 1224567777888888888888888888887764 1 112345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-------CCCc-CHHHHHHHHHHHHHcCCHHH------HHHHHHHHHHCCCCCCH
Q 003749 441 MMMDGYTIIGNEEKCLIVFERLKEC-------GFSP-SIISYGCLINLYTKIGKVSK------ALEVSKVMKSSGIKHNM 506 (798)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~li~~~~~~g~~~~------A~~~~~~m~~~~~~~~~ 506 (798)
.+..+|...|++++|+.+|++..+. ...+ ....|..+...+...+.... +...++.+.. ......
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 252 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVN 252 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHH
Confidence 8888888888888888888887753 1111 22334334333333333222 2222221111 111234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003749 507 KTYSMLINGFLKLKDWANVFAVFEDVMRD 535 (798)
Q Consensus 507 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (798)
.++..+...|...|++++|..+|++.++.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56777888888999999999999887653
No 289
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.19 E-value=2.6e-11 Score=100.35 Aligned_cols=63 Identities=22% Similarity=0.229 Sum_probs=56.9
Q ss_pred HHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecccccc
Q 003749 166 HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235 (798)
Q Consensus 166 ~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~~~~~ 235 (798)
++|++.|++||.|.+|.|.++ . ++||+||+|.+.++|.+|++.| ||..++||.|+|.++....
T Consensus 32 edl~~~f~kfG~V~~v~i~~~-~----~~G~~fV~f~~~e~A~~Ai~~l--nG~~f~GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 32 DDVIEECNKHGGVIHIYVDKN-S----AQGNVYVKCPSIAAAIAAVNAL--HGRWFAGKMITAAYVPLPT 94 (114)
T ss_dssp HHHHHHHTTTTCCSEEEECTT-C----TTCCEEEECSSHHHHHHHHHHH--TTCEETTEECEEEEECHHH
T ss_pred HHHHHHHhccCCEEEEEEecC-C----CcEEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEEEEcHHH
Confidence 478999999999999999765 1 4899999999999999999999 9999999999999986553
No 290
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.16 E-value=2.5e-10 Score=114.53 Aligned_cols=228 Identities=12% Similarity=0.051 Sum_probs=160.3
Q ss_pred HccCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------C-CCCChhhHHHH
Q 003749 342 AVGRDMEEALSCVRKMKEE-------GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER------H-ATLNAIIYGNI 407 (798)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l 407 (798)
...|++++|+.+|++.++. ..+....++..++..|...|++++|+..|+++... + ......++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3457777777777776552 22234678999999999999999999999998764 1 12346688889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC-------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCc-CHHH
Q 003749 408 IYAQCQTRNMERAEALVRDMEEEG-------IDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC------GFSP-SIIS 473 (798)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~m~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~ 473 (798)
..+|...|++++|.+.++++.+.. .+....++..+...|...|++++|+.+|++..+. +..+ ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999988751 1233667889999999999999999999999875 1122 3567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCC
Q 003749 474 YGCLINLYTKIGKVSKALEVSKVMKSS-------GIKH-NMKTYSMLINGFLKLKD------WANVFAVFEDVMRDGLKP 539 (798)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~-~~~~~~~ll~~~~~~~~------~~~a~~~~~~~~~~g~~~ 539 (798)
+..+..+|...|++++|+.+++++.+. ...+ ....|..+...+...+. +..+...++..... ...
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 888999999999999999999998763 1111 22233333333333322 22232222222111 111
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 003749 540 DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKE 570 (798)
Q Consensus 540 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 570 (798)
...++..+..+|...|++++|..+|++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888999999999999999999988754
No 291
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.15 E-value=1e-08 Score=102.29 Aligned_cols=217 Identities=8% Similarity=0.033 Sum_probs=146.8
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRG--DMHRARQTFENMRARGIEPTLHVYTNLIHAY 341 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 341 (798)
++|++.+++++..||. +...|+.--.++...| ++++++++++.++..+ +-+..+|+.-..++
T Consensus 50 ~~aL~~t~~~L~~nP~---------------~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL 113 (306)
T 3dra_A 50 ERALHITELGINELAS---------------HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcH---------------HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHH
Confidence 5788888888888887 4445555556666666 8888888888888764 33555666666665
Q ss_pred ----Hcc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003749 342 ----AVG---RDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE--AADHWFEEAKERHATLNAIIYGNIIYAQC 412 (798)
Q Consensus 342 ----~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (798)
.+. +++++++.+++++++.. +-+..+|+.-.-.+.+.|.++ +++++++++++.+.. |..+|.....++.
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~ 191 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLF 191 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 555 67888888888888764 337778888777777788777 888888888877554 7777777666666
Q ss_pred hcCC------hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCcCHHHHHHHHHHHHH
Q 003749 413 QTRN------MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK-CLIVFERLKECG--FSPSIISYGCLINLYTK 483 (798)
Q Consensus 413 ~~g~------~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~li~~~~~ 483 (798)
+.+. ++++++.+++++... +.|...|+.+...+.+.|+... +..+..++.+.+ -..+...+..+.++|.+
T Consensus 192 ~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~ 270 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ 270 (306)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred hccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence 6665 677777777777664 4566777777777766666333 334444444322 12255666666666666
Q ss_pred cCCHHHHHHHHHHHHH
Q 003749 484 IGKVSKALEVSKVMKS 499 (798)
Q Consensus 484 ~g~~~~A~~~~~~m~~ 499 (798)
.|+.++|+++++.+.+
T Consensus 271 ~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 271 QKKYNESRTVYDLLKS 286 (306)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 6777777777766664
No 292
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=7.8e-11 Score=89.76 Aligned_cols=74 Identities=16% Similarity=0.299 Sum_probs=62.3
Q ss_pred ccccceeecCCC----ccCch----HHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCee
Q 003749 149 RQEGKIFVGNLP----NWIKK----HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE 220 (798)
Q Consensus 149 ~~~~~~~v~nl~----~~~~~----~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~ 220 (798)
++..+|+|.-.+ .+.-+ .+|.+.|++||.|..++++.| .+||+|.+.++|.+|++ | ||..
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d---------~~fVtF~d~~sAlaAi~-m--nG~~ 72 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED---------KMWVTFLEGSSALNVLS-L--NGKE 72 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS---------SEEEEESSHHHHHHGGG-G--TTCE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC---------CEEEEECChHHHHHHHh-c--CCeE
Confidence 345688887765 22333 478999999999999999987 38999999999999998 8 9999
Q ss_pred ecceeeeeeccccc
Q 003749 221 FHGRVLTVKLDDGR 234 (798)
Q Consensus 221 ~~g~~~~v~~~~~~ 234 (798)
+.||.|+|+++++.
T Consensus 73 v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 73 LLNRTITIALKSPS 86 (91)
T ss_dssp ETTEEEEEEECCCS
T ss_pred eCCeEEEEEeCCCC
Confidence 99999999998765
No 293
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.12 E-value=2e-09 Score=108.67 Aligned_cols=160 Identities=13% Similarity=-0.021 Sum_probs=73.7
Q ss_pred HHHccCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-C----hhhHHHHHH
Q 003749 340 AYAVGRDMEEALSCVRKMKEE----GIEM-SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL-N----AIIYGNIIY 409 (798)
Q Consensus 340 ~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~ 409 (798)
.|...|++++|+..|++..+. |-.. ...+|+.+..+|.+.|++++|+..|++.+...... + ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666666555432 1111 13455666666666666666666666554421100 0 123444445
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH------HHHHHH
Q 003749 410 AQCQT-RNMERAEALVRDMEEEGIDA-P----IDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSI------ISYGCL 477 (798)
Q Consensus 410 ~~~~~-g~~~~A~~~~~~m~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l 477 (798)
+|... |++++|++.|++.++..... + ..+++.+...|...|++++|+..|++..+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 55553 55555555555544321000 0 123444455555555555555555555443221111 133444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 003749 478 INLYTKIGKVSKALEVSKVMKS 499 (798)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~ 499 (798)
..++...|++++|+..|++..+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555555555555443
No 294
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.09 E-value=5.8e-08 Score=96.83 Aligned_cols=222 Identities=6% Similarity=-0.047 Sum_probs=164.9
Q ss_pred HcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc-
Q 003749 308 RRGD-MHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR--DMEEALSCVRKMKEEGIEMSLVTYSIIVGGF----AKM- 379 (798)
Q Consensus 308 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~----~~~- 379 (798)
+.|. .++|+.+++.++..+ +-+..+|+.--.++...| ++++++++++.++..+.. +..+|+.-...+ .+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 4444 468999999999874 335567888888888888 999999999999887533 667777766666 555
Q ss_pred --CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC----
Q 003749 380 --GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNME--RAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN---- 451 (798)
Q Consensus 380 --g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~---- 451 (798)
+++++++++++++.+.+.. |..+|..-..++.+.|.++ ++++.++++++.+ ..+...|+.-.......+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 7889999999999887654 7888888888888888887 8888888888876 4577788877777777766
Q ss_pred --HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 003749 452 --EEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSK-ALEVSKVMKSSG--IKHNMKTYSMLINGFLKLKDWANVF 526 (798)
Q Consensus 452 --~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~ 526 (798)
++++++.++++...... |...|+.+...+.+.|+..+ +.++..++.+.+ -..+...+..+.++|.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 77888888888776544 77788877777777776433 444555554322 1235667777777777777777777
Q ss_pred HHHHHHHH
Q 003749 527 AVFEDVMR 534 (798)
Q Consensus 527 ~~~~~~~~ 534 (798)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777765
No 295
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.09 E-value=2.8e-07 Score=99.57 Aligned_cols=369 Identities=11% Similarity=0.012 Sum_probs=183.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHH----hcCCH
Q 003749 310 GDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRD-MEEALSCVRKMKEE-GIE-MSLVTYSIIVGGFA----KMGNA 382 (798)
Q Consensus 310 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~~~-g~~-~~~~~~~~l~~~~~----~~g~~ 382 (798)
|+++.+..+|++.+.. .|++..|...+....+.++ .+....+|+..+.. |.. .+...|...+..+. ..|++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 6788888888888875 5688888888877777663 35566777777654 322 25677777776654 24567
Q ss_pred HHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003749 383 EAADHWFEEAKERHATLNAI-IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFER 461 (798)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (798)
+.+.++|++++... ..+.. .|.... .+.+..+...+..++.+.. ..+..|..++.+
T Consensus 106 ~~vR~iy~rAL~~P-~~~~~~lw~~Y~-~fE~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~ 162 (493)
T 2uy1_A 106 EKIRNGYMRALQTP-MGSLSELWKDFE-NFELELNKITGKKIVGDTL---------------------PIFQSSFQRYQQ 162 (493)
T ss_dssp HHHHHHHHHHHTSC-CTTHHHHHHHHH-HHHHHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh-hhhHHHHHHHHH-HHHHHhccccHHHHHHHHh---------------------HHHHHHHHHHHH
Confidence 78888888887642 11211 111111 1111111111222221111 123333434433
Q ss_pred HHHCCCCcCHHHHHHHHHHHHHcC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 462 LKECGFSPSIISYGCLINLYTKIG--K-----VSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMR 534 (798)
Q Consensus 462 ~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 534 (798)
+...--..+...|...+..-...+ - .+.+..+|++++... +.+...|...+..+.+.|+.+.|..+|++...
T Consensus 163 ~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 163 IQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 332100012234444443322110 0 233455666665532 33455566666666666666666666666666
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003749 535 DGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTF 614 (798)
Q Consensus 535 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 614 (798)
. +. +...|.. |....+.++. ++.+...-.. ...+.+. .. . ......+|
T Consensus 242 ~-P~-~~~l~~~----y~~~~e~~~~---~~~l~~~~~~----------------~~~~~~~-----~~-~-~~~~~~lw 289 (493)
T 2uy1_A 242 M-SD-GMFLSLY----YGLVMDEEAV---YGDLKRKYSM----------------GEAESAE-----KV-F-SKELDLLR 289 (493)
T ss_dssp H-CC-SSHHHHH----HHHHTTCTHH---HHHHHHHTC--------------------------------C-HHHHHHHH
T ss_pred C-CC-cHHHHHH----HHhhcchhHH---HHHHHHHHHh----------------hccchhh-----hh-c-ccccHHHH
Confidence 5 22 2222211 1111111111 1111110000 0000000 00 0 00012445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003749 615 NALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLG-DTGKAFEYFTKLRNEGLELDVFTYEALLKACCK 693 (798)
Q Consensus 615 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 693 (798)
...+..+.+.+..+.|..+|+++ ... ..+...|...+..-...+ +.+.|..+|+..++.-.. +...+...++...+
T Consensus 290 ~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 55555555666777777777777 221 123344433222222223 577788888877765322 34455556666677
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 694 SGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 694 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
.|+.+.|..+|+++. .....|...+..=...|+.+.+..+++++.+
T Consensus 367 ~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 367 IGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788888888887762 2466777777666667888877777777664
No 296
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=1.9e-10 Score=94.65 Aligned_cols=82 Identities=12% Similarity=0.170 Sum_probs=71.3
Q ss_pred hhcccccceeecCCCcc-CchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCC-hhHHHHHHHhcccCCeeecc
Q 003749 146 TEFRQEGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDG-PAAEKSAMKAVEFDGVEFHG 223 (798)
Q Consensus 146 ~~~~~~~~~~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~-~~~a~~a~~~~~~~~~~~~g 223 (798)
.....++.|||+||+.+ +++++|+++|++||.|.+|.++++ .-.|||.|.+ ..+|..|++.+..++..|+|
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g-------~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-------AKEGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT-------CSEEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC-------CCEEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 34567789999999999 999999999999999999999988 4469999999 79999999998556889999
Q ss_pred eeeeeeccccc
Q 003749 224 RVLTVKLDDGR 234 (798)
Q Consensus 224 ~~~~v~~~~~~ 234 (798)
..+++++..+.
T Consensus 86 ~~~~~evL~Ge 96 (121)
T 1owx_A 86 KEVTWEVLEGE 96 (121)
T ss_dssp SSEEEEECCHH
T ss_pred cEEEEEECCCH
Confidence 98888765433
No 297
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.08 E-value=5.8e-09 Score=103.36 Aligned_cols=186 Identities=12% Similarity=0.017 Sum_probs=121.8
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCCHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT---LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGI--EMSLVTY 369 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~ 369 (798)
+...+..+...+.+.|++++|+..|+.+++.. +.+ ...+..+..+|.+.|++++|+..|++.++... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 56667778888899999999999999998873 223 56788888999999999999999999988632 1235567
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 003749 370 SIIVGGFAK--------MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHM 441 (798)
Q Consensus 370 ~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 441 (798)
..+..++.+ .|++++|+..|++++..... +......+... ..+... ....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 788888888 89999999999998876432 33333221110 000000 0111445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHC
Q 003749 442 MMDGYTIIGNEEKCLIVFERLKECGFSP--SIISYGCLINLYTKI----------GKVSKALEVSKVMKSS 500 (798)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 500 (798)
+...|...|++++|+..|+++++..... ....+..+..+|... |++++|+..|+++.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 5566666666666666666666542211 123455555566544 6666777777666654
No 298
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.08 E-value=3.4e-07 Score=98.96 Aligned_cols=384 Identities=9% Similarity=0.034 Sum_probs=206.7
Q ss_pred cC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHH
Q 003749 309 RG-DMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN-AEAAD 386 (798)
Q Consensus 309 ~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~-~~~A~ 386 (798)
.| +++.|+.+|+++... -|. |+++.+..+|++.+.. .|+...|...+....+.+. .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 377788888887764 222 7899999999998874 4688899888888777764 45677
Q ss_pred HHHHHHHhc-CC-CCChhhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 003749 387 HWFEEAKER-HA-TLNAIIYGNIIYAQC----QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFE 460 (798)
Q Consensus 387 ~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (798)
.+|+.+... |. ..+...|...+..+. ..++.+.+.++|++.+......-...|...... ....+...+..++.
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHH
Confidence 788877653 32 235566666665543 245677788888888763211111112211111 11111112222221
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHH
Q 003749 461 RLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLK--D-----WANVFAVFEDVM 533 (798)
Q Consensus 461 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~-----~~~a~~~~~~~~ 533 (798)
+ .. ..+..|..+++.+...--..+...|...++.-...+ - .+.+..+|++++
T Consensus 148 ~-------------------~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al 206 (493)
T 2uy1_A 148 D-------------------TL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYIL 206 (493)
T ss_dssp H-------------------HH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred H-------------------Hh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHH
Confidence 1 11 123334444433332100012334444333322110 0 234555666666
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003749 534 RDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHT 613 (798)
Q Consensus 534 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 613 (798)
..... +...|...+..+.+.|+.++|..+|++.... |....+.. .|....+.++ +++.+.+
T Consensus 207 ~~~p~-~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~---~~~~l~~--------- 267 (493)
T 2uy1_A 207 DSFYY-AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEA---VYGDLKR--------- 267 (493)
T ss_dssp HHTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTH---HHHHHHH---------
T ss_pred HcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhH---HHHHHHH---------
Confidence 54332 4556666666666666677777777666665 22221111 1211111111 1111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003749 614 FNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCK 693 (798)
Q Consensus 614 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 693 (798)
.+.. ...+.+. + ... ......|...+..+.+.++.+.|..+|+++ ... ..+..+|......-..
T Consensus 268 ------~~~~-~~~~~~~-----~-~~~-~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~ 331 (493)
T 2uy1_A 268 ------KYSM-GEAESAE-----K-VFS-KELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY 331 (493)
T ss_dssp ------HTC-----------------CH-HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH
T ss_pred ------HHHh-hccchhh-----h-hcc-cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH
Confidence 1000 0000000 0 000 011245666777777788899999999999 322 2355566544433334
Q ss_pred cC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCcccccc
Q 003749 694 SG-RMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFS 772 (798)
Q Consensus 694 ~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~ 772 (798)
.+ +.+.|..+|+...+.- +.+...|...++...+.|+.+.|..+|+++. -....|...+.--...|+.+.+..
T Consensus 332 ~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~ 405 (493)
T 2uy1_A 332 ATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRE 405 (493)
T ss_dssp HHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHH
Confidence 44 6999999999998753 4456677778888888999999999999872 246678888877777888877766
Q ss_pred c
Q 003749 773 I 773 (798)
Q Consensus 773 ~ 773 (798)
+
T Consensus 406 v 406 (493)
T 2uy1_A 406 L 406 (493)
T ss_dssp H
T ss_pred H
Confidence 4
No 299
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=4.9e-09 Score=105.72 Aligned_cols=199 Identities=10% Similarity=0.010 Sum_probs=146.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CC----HHH
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRAR----GIEP-TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE-MS----LVT 368 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~ 368 (798)
|...+..|...|++++|++.|++..+. |..+ ...+|+.+..+|.+.|++++|+..|++.++.... .+ ..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333456678899999999999988764 2111 1458899999999999999999999998763110 01 457
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCC-C----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh------
Q 003749 369 YSIIVGGFAKM-GNAEAADHWFEEAKERHATL-N----AIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPI------ 436 (798)
Q Consensus 369 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~------ 436 (798)
++.+...|... |++++|+..|++..+..... + ..++..+..+|.+.|++++|++.|++..+.......
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 88999999996 99999999999988752211 1 356888999999999999999999999986533222
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH------HHHHHHHHHHH--HcCCHHHHHHHHHHHHH
Q 003749 437 DIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSI------ISYGCLINLYT--KIGKVSKALEVSKVMKS 499 (798)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 499 (798)
..|..+..+|...|++++|+..|++..+.. |+. ..+..++..|. ..+++++|+..|+++..
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 157788899999999999999999987642 221 12334445553 34567777777766543
No 300
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.04 E-value=1.5e-08 Score=96.56 Aligned_cols=176 Identities=13% Similarity=0.066 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 003749 314 RARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG----NAEAADHWF 389 (798)
Q Consensus 314 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 389 (798)
+|++.|++..+.| +...+..|...|...+++++|+.+|++..+.| +...+..|..+|.. + ++++|+++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3556666666654 56666666667766777777777777776654 55666666666666 5 667777777
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHH
Q 003749 390 EEAKERHATLNAIIYGNIIYAQCQ----TRNMERAEALVRDMEEEGID-APIDIYHMMMDGYTI----IGNEEKCLIVFE 460 (798)
Q Consensus 390 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 460 (798)
++..+.+ +..++..|..+|.. .+++++|++.|++..+.+.. .+...+..|..+|.. .++.++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7666543 45566666666655 56666666666666665411 014556666666665 556666666666
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHCC
Q 003749 461 RLKECGFSPSIISYGCLINLYTKI-G-----KVSKALEVSKVMKSSG 501 (798)
Q Consensus 461 ~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 501 (798)
+..+.+ .+...+..|..+|... | +.++|+..|++..+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 665541 1334455555555443 2 5666666666665544
No 301
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.04 E-value=7.1e-09 Score=98.53 Aligned_cols=188 Identities=11% Similarity=-0.033 Sum_probs=95.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPT-LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (798)
+......+.+.|++++|+..|+++++. .|+ ...|... ....- .......+..+..+|.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-----~~~~~--------------~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-----NVDKN--------------SEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-----HSCTT--------------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-----hhcch--------------hhhhHHHHHHHHHHHH
Confidence 344455667778888888888887776 222 2233330 00000 0001112223555566
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--HHHH
Q 003749 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN--EEKC 455 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~A 455 (798)
+.|++++|+..|++.++.+.. +..++..+..+|...|++++|++.|++.++.. +.+..+|..+..+|...|+ .+.+
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 666666666666666555322 45555666666666666666666666666553 3345555556555544432 2333
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003749 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLI 513 (798)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 513 (798)
...+.+... ..+....+..+..++...|++++|+..|++.++. .|+......+.
T Consensus 144 ~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~ 197 (208)
T 3urz_A 144 ETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLD 197 (208)
T ss_dssp HHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHH
T ss_pred HHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 444444332 1222223334445555566677777777766653 45554444433
No 302
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=1.2e-08 Score=101.14 Aligned_cols=213 Identities=6% Similarity=-0.055 Sum_probs=148.8
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CChhh
Q 003749 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS---LVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT--LNAII 403 (798)
Q Consensus 329 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~ 403 (798)
.+...+..+...+.+.|++++|+..|+++++.. +-+ ...+..++.+|.+.|++++|+..|++++..... ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 456677778888888999999999999988863 223 677888888999999999999999998886432 22456
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 003749 404 YGNIIYAQCQ--------TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYG 475 (798)
Q Consensus 404 ~~~l~~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 475 (798)
+..+..++.. .|++++|++.|+++++.. +.+......+.. +..+... -...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 7777888888 888899999888888764 222222222211 1111110 112356
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCC--H
Q 003749 476 CLINLYTKIGKVSKALEVSKVMKSSGIKH--NMKTYSMLINGFLKL----------KDWANVFAVFEDVMRDGLKPD--V 541 (798)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~g~~~~--~ 541 (798)
.+..+|.+.|++++|+..|+++++..... ....+..+..+|... |++++|...|+++.+..+... .
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 77889999999999999999998863221 245677788888866 899999999999998754422 2
Q ss_pred HHHHHHHHHHHcCCChHHHH
Q 003749 542 VLYNNIIRAFCGMGNMDRAI 561 (798)
Q Consensus 542 ~~~~~li~~~~~~g~~~~A~ 561 (798)
.....+...+...++++++.
T Consensus 233 ~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 34555556666666555443
No 303
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.04 E-value=1.1e-08 Score=97.25 Aligned_cols=190 Identities=12% Similarity=0.083 Sum_probs=128.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003749 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS-LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (798)
Q Consensus 333 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (798)
.+......+.+.|++++|+..|++.++.. |+ ...|... ...... .........+..+|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----~~~~~~--------------~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-----NVDKNS--------------EISSKLATELALAY 64 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-----HSCTTS--------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-----hhcchh--------------hhhHHHHHHHHHHH
Confidence 34444555667777777777777776642 22 2222110 011100 00112234488899
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC--HHH
Q 003749 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGK--VSK 489 (798)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~ 489 (798)
.+.|++++|+..|++.++.. +.+..++..+..+|...|++++|+..|++.++.... +..+|..+..+|...|+ .+.
T Consensus 65 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999985 557889999999999999999999999999987543 67889899888876654 445
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 490 ALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549 (798)
Q Consensus 490 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 549 (798)
+...++++.. ..+....+..+..++...|++++|+..|++.++. .|+......+.+
T Consensus 143 ~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~ 198 (208)
T 3urz_A 143 LETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHHH
T ss_pred HHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 6666666543 2222334445566777789999999999999875 556555555444
No 304
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.03 E-value=1.3e-08 Score=88.56 Aligned_cols=130 Identities=19% Similarity=0.199 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (798)
.|..+...|...|++++|+.+|+++.+.+ ..+...+..+...+...|++++|+.+|+++.+.+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34556666777777777777777776653 3355666666677777777777777777776653 235556666666677
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 430 (798)
+.|++++|+.+|+++..... .+..++..++.++.+.|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77777777777776665532 24555556666666666666666666665543
No 305
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.00 E-value=4.1e-08 Score=93.47 Aligned_cols=178 Identities=13% Similarity=0.045 Sum_probs=149.3
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
.+|.+.|.++.+.. +...+..|...|...|++++|+..|++..+.| +...+..|...|..
T Consensus 3 ~eA~~~~~~aa~~g-----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~ 62 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG-----------------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR 62 (212)
T ss_dssp -CTTHHHHHHHHTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHCC-----------------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc
Confidence 35667777776542 56677888999999999999999999999986 77888999999988
Q ss_pred cC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHh-
Q 003749 344 GR----DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----MGNAEAADHWFEEAKERHAT-LNAIIYGNIIYAQCQ- 413 (798)
Q Consensus 344 ~g----~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~- 413 (798)
+ ++++|+.+|++..+.| +...+..|..+|.. .+++++|+++|++..+.+.. .+..++..|..+|..
T Consensus 63 -~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT
T ss_pred -CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
Confidence 7 8999999999999875 78899999999988 89999999999999987532 126888899999998
Q ss_pred ---cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCCC
Q 003749 414 ---TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII-G-----NEEKCLIVFERLKECGF 467 (798)
Q Consensus 414 ---~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 467 (798)
.+++++|++.|++..+. ..+...+..|..+|... | +.++|+.+|++..+.|.
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88999999999999987 23556788888888754 3 89999999999988763
No 306
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.00 E-value=2.7e-09 Score=121.07 Aligned_cols=152 Identities=9% Similarity=0.003 Sum_probs=68.6
Q ss_pred HcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003749 308 RRGDMHRARQTFENMR--------ARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (798)
..|++++|++.|+++. +.. ..+...+..+..+|.+.|++++|+..|+++++.+ +.+...|..+..+|.+.
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 3444555555555544 221 2233444444444555555555555555544432 12344444444455555
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 003749 380 GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459 (798)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (798)
|++++|++.|+++.+.+.. +...+..+..+|.+.|++++ ++.|++.++.+ +.+...|..+..+|...|++++|+..|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555554444222 34444444444444444444 44444444432 223344444444444444444444444
Q ss_pred HHHHH
Q 003749 460 ERLKE 464 (798)
Q Consensus 460 ~~~~~ 464 (798)
++..+
T Consensus 558 ~~al~ 562 (681)
T 2pzi_A 558 DEVPP 562 (681)
T ss_dssp HTSCT
T ss_pred Hhhcc
Confidence 44433
No 307
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=2.3e-08 Score=87.04 Aligned_cols=130 Identities=18% Similarity=0.230 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 613 TFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACC 692 (798)
Q Consensus 613 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 692 (798)
.|..+...+...|++++|..+++++.+.. ..+...+..++..+...|++++|..+|+++.+.+.. +...+..+..++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 34555566666677777777776666543 234556666666777777777777777777665432 5566667777777
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003749 693 KSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (798)
Q Consensus 693 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (798)
..|++++|..+++++.... +.+...+..++.++.+.|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777776654 345667777777777777777777777777653
No 308
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.99 E-value=6e-08 Score=95.50 Aligned_cols=178 Identities=14% Similarity=0.111 Sum_probs=88.7
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 560 AIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGC-IPTVHTFNALILGLVEKRQMEKAIEILDEMT 638 (798)
Q Consensus 560 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 638 (798)
|+..|++....+ ..+...+..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444332 12233334455555556666666666665544332 1144455555556666666666666666665
Q ss_pred HCCCCC-----CHHHHHHHHHH--HHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003749 639 LAGISP-----NEHTYTTIMHG--YASLG--DTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA 709 (798)
Q Consensus 639 ~~~~~p-----~~~t~~~li~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (798)
+. .+ +..+...|+.+ ....| ++++|..+|+++.+.. |+..+...|+.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 23 23334444433 22222 5666666666655432 3322333333356666666666666664443
Q ss_pred C-----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 710 Q-----K----IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 710 ~-----~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
. + -+.|..++..+|......|+ +|.++++++++
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 1 0 03345555455545555555 56666666665
No 309
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.98 E-value=6e-08 Score=95.51 Aligned_cols=144 Identities=9% Similarity=0.024 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 385 ADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (798)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (798)
|+..|++....+ ..+..++..+..++...|++++|++++.+.+..+. .-+...+..++.+|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555544432 22333344555555555555555555555544331 1234444455555555555555555555554
Q ss_pred HCCCCc-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 464 ECGFSP-----SIISYGCLINL--YTKIG--KVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVM 533 (798)
Q Consensus 464 ~~~~~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (798)
+. .+ +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 22 12222333322 12122 555555555555433 2232222333335555555555555555443
No 310
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=7.2e-10 Score=84.77 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=62.8
Q ss_pred hcccccceeecCCCcc------Cch---HHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccC
Q 003749 147 EFRQEGKIFVGNLPNW------IKK---HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD 217 (798)
Q Consensus 147 ~~~~~~~~~v~nl~~~------~~~---~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 217 (798)
..++..+|+|.-++.. .++ .+|.+.|++||.|..++++.| + +||+|.+.++|.+||+ | |
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------~--~fVtF~d~~sAl~AI~-l--d 78 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------Q--MLVTFADSHSALSVLD-V--D 78 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------E--EEEECSCSHHHHHHHH-G--G
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------c--EEEEEcChHHHHHHHh-c--C
Confidence 3456679999887632 232 368899999999999999988 2 9999999999999998 8 9
Q ss_pred Ceeecceeeeeecccc
Q 003749 218 GVEFHGRVLTVKLDDG 233 (798)
Q Consensus 218 ~~~~~g~~~~v~~~~~ 233 (798)
|..+.||.|+|++..+
T Consensus 79 G~~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 79 GMKVKGRAVKISGPSS 94 (95)
T ss_dssp GSEETTEEEEEECCCC
T ss_pred CeeeCCeEEEEeccCC
Confidence 9999999999987643
No 311
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.95 E-value=7.4e-09 Score=117.51 Aligned_cols=174 Identities=7% Similarity=-0.004 Sum_probs=137.6
Q ss_pred HcCCChHHHHHHHHHHH--------HCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 552 CGMGNMDRAIHIVKEMQ--------KERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVE 623 (798)
Q Consensus 552 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 623 (798)
...|++++|+..|++.. .... .+...+..+..+|.+.|++++|+..|+++.+.... +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67788888888888887 4332 25667778888888999999999999988876544 67888888888999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003749 624 KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAV 703 (798)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 703 (798)
.|++++|+..|++.++.. +-+...|..+..+|.+.|++++ ++.|+++++.+.. +...|..+..+|.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988764 3456788888889999999999 9999999887654 677888899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003749 704 TKEMSAQKIPRNTFVYNILIDGWARRGD 731 (798)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 731 (798)
|+++.+.+ +.+...|..++.++...|+
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99888765 3446677788888766554
No 312
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.94 E-value=2.7e-09 Score=95.30 Aligned_cols=82 Identities=7% Similarity=-0.059 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 003749 370 SIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII 449 (798)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 449 (798)
..+...|.+.|++++|++.|+++++.+.. +..+|..+..+|.+.|++++|+..|++.++.+ +.+..+|..+...|.+.
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 33444444444444444444444433221 33344444444444444444444444444332 22233344444444444
Q ss_pred CCHH
Q 003749 450 GNEE 453 (798)
Q Consensus 450 g~~~ 453 (798)
|+++
T Consensus 113 ~~~~ 116 (150)
T 4ga2_A 113 DVTD 116 (150)
T ss_dssp CSSS
T ss_pred CChH
Confidence 4433
No 313
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.94 E-value=6.8e-08 Score=93.06 Aligned_cols=187 Identities=14% Similarity=0.020 Sum_probs=128.8
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH---HHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEP--TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSL---VTY 369 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~ 369 (798)
+...+..+...+.+.|++++|+..|+++++..... ....+..+..+|.+.|++++|+..|+++++.... +. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHH
Confidence 34556677788999999999999999999863111 1357888889999999999999999999986422 22 255
Q ss_pred HHHHHHHHh------------------cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 370 SIIVGGFAK------------------MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (798)
Q Consensus 370 ~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 431 (798)
..+..++.+ .|++++|+..|+++++.... +..++..+... ..+...+.
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH---
Confidence 566666654 56777888888877765322 23232221110 00111111
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003749 432 IDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSP--SIISYGCLINLYTKIGKVSKALEVSKVMKSSG 501 (798)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 501 (798)
.....+...|.+.|++++|+..|+++++..... ....+..+..+|.+.|+.++|++.++.+...+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 112456788899999999999999998863221 12467888999999999999999999888764
No 314
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.93 E-value=8.8e-09 Score=91.92 Aligned_cols=134 Identities=11% Similarity=0.030 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
+.|+..|.+++..++. +...+..+...|.+.|++++|++.|+++++.. +.+..+|..+..+|.+
T Consensus 14 e~ai~~~~~a~~~~p~---------------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 14 ERYIASVQGSTPSPRQ---------------KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYEL 77 (150)
T ss_dssp HHHHHHHHHHSCSHHH---------------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 5666666666555443 23344455666666666666666666666653 3355566666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003749 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHW-FEEAKERHATLNAIIYGNIIYAQCQTR 415 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g 415 (798)
.|++++|+..|++.++.. +-+..+|..+...|.+.|++++|.+. ++++.+..+. +..+|......+...|
T Consensus 78 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred cCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 666666666666666643 22455666666666666666554443 3555554322 4444544444444444
No 315
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.93 E-value=1.2e-07 Score=91.41 Aligned_cols=190 Identities=8% Similarity=-0.056 Sum_probs=130.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh--hhHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM--SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNA--IIYG 405 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 405 (798)
+...+..+...+.+.|++++|+..|+++++..... ....+..++.+|.+.|++++|+..|+++.+....... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44566677788899999999999999999863221 1457888999999999999999999999987544221 2555
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003749 406 NIIYAQCQ------------------TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (798)
Q Consensus 406 ~l~~~~~~------------------~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (798)
.+..++.+ .|++++|...|+++++.. +-+..++..+.... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH-----
Confidence 56666654 456677777777776653 22222222111100 000111
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003749 468 SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN--MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK 538 (798)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 538 (798)
......+...|.+.|++++|+..|+++++...... ...+..+..+|.+.|++++|...++.+...++.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123567889999999999999999998632111 246788899999999999999999999887543
No 316
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=2.2e-08 Score=101.81 Aligned_cols=164 Identities=12% Similarity=0.016 Sum_probs=86.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003749 309 RGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHW 388 (798)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 388 (798)
.|++++|.+++++..+.. ... .+...+++++|..+|+++ +..|...|++++|+..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 466778888888777642 111 011146777777776654 3456677788888777
Q ss_pred HHHHHhcCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC--ChhhHHHHHHHHHhcCCHHHHHHH
Q 003749 389 FEEAKERHATL-----NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGI---DA--PIDIYHMMMDGYTIIGNEEKCLIV 458 (798)
Q Consensus 389 ~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~ 458 (798)
|.++.+..... -..+|..+..+|.+.|++++|++.|++.++... .+ ...+++.+..+|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 77765531110 123555666666666777776666666554210 00 12344455555555 555555555
Q ss_pred HHHHHHCCCCc-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003749 459 FERLKECGFSP-----SIISYGCLINLYTKIGKVSKALEVSKVMK 498 (798)
Q Consensus 459 ~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (798)
|++..+..... ...+++.+..+|.+.|++++|+..|++..
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55554321000 02334444455555555555555554444
No 317
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.91 E-value=2.2e-07 Score=93.42 Aligned_cols=169 Identities=7% Similarity=0.041 Sum_probs=125.0
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRG-DMHRARQTFENMRARGIEPTLHVYTNLIHAYA 342 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 342 (798)
++|++.+++++..||. +...|+.--.++...| ++++++++++.++... +-+..+|+....++.
T Consensus 71 e~AL~lt~~~L~~nP~---------------~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 71 ERALELTEIIVRMNPA---------------HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch---------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 6788888888888887 4455555555666667 5889999999988875 446777888887777
Q ss_pred cc-C-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003749 343 VG-R-DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE--------AADHWFEEAKERHATLNAIIYGNIIYAQC 412 (798)
Q Consensus 343 ~~-g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (798)
+. + ++++++++++++++.. +-|..+|+...-.+.+.|.++ ++++.++++++.++. |..+|+....++.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 76 6 8888999998888875 337888887777777766666 888888888887544 7778887777777
Q ss_pred hcCC-------hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 003749 413 QTRN-------MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (798)
Q Consensus 413 ~~g~-------~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 451 (798)
+.++ ++++++.+++++... +.|...|+.+-..+.+.|+
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 7765 577777777777764 4566777766666655554
No 318
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=4.2e-08 Score=98.46 Aligned_cols=165 Identities=7% Similarity=-0.014 Sum_probs=120.4
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTY-SIIV 373 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~l~ 373 (798)
+...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..+|.+.|++++|+.+|+++.... |+.... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 34456677788888999999999999988874 4466788888888889999999999988887653 344333 3333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCH
Q 003749 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA-PIDIYHMMMDGYTIIGNE 452 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~ 452 (798)
..+.+.++.++|+..|++...... .+...+..+..+|...|++++|++.|+++++..... +...+..++..|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 346677778888888888877643 367778888888888888888888888888764221 145677777777777777
Q ss_pred HHHHHHHHHHH
Q 003749 453 EKCLIVFERLK 463 (798)
Q Consensus 453 ~~A~~~~~~~~ 463 (798)
++|...|++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77777776654
No 319
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.88 E-value=1.5e-08 Score=93.41 Aligned_cols=160 Identities=13% Similarity=0.068 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG-FA 377 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~-~~ 377 (798)
+..+...+.+.|++++|+..|+++.+.. +.+...+..+..+|.+.|++++|+..|+++.+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3445555666666666666666655542 2345556666666666666666666666655542 133322222211 11
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHH
Q 003749 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA-PIDIYHMMMDGYTIIGNEEKCL 456 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 456 (798)
+.+...+|+..|++..+.+.. +...+..+..++...|++++|.+.|+++++..... +...+..+..+|...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 212223345555555544222 44555555555555555555555555555543211 1234455555555555555555
Q ss_pred HHHHHH
Q 003749 457 IVFERL 462 (798)
Q Consensus 457 ~~~~~~ 462 (798)
..|++.
T Consensus 165 ~~y~~a 170 (176)
T 2r5s_A 165 SKYRRQ 170 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 320
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.88 E-value=4.2e-08 Score=98.43 Aligned_cols=168 Identities=5% Similarity=-0.044 Sum_probs=134.7
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 003749 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNII 408 (798)
Q Consensus 329 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 408 (798)
.+...+..+...+...|++++|+..|++.++.. +-+...+..++..|.+.|++++|+..|+++..... ..........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p-~~~~~~~~~~ 192 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ-DTRYQGLVAQ 192 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC-SHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc-chHHHHHHHH
Confidence 355667788888999999999999999999874 33788899999999999999999999999877643 1233333344
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHHcCCH
Q 003749 409 YAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSP-SIISYGCLINLYTKIGKV 487 (798)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~ 487 (798)
..+.+.++.++|.+.+++..+.. +.+...+..+...|...|++++|+..|.++.+..... +...+..++.+|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 45778888888999999988875 5567888999999999999999999999998864321 266788889999999998
Q ss_pred HHHHHHHHHHHH
Q 003749 488 SKALEVSKVMKS 499 (798)
Q Consensus 488 ~~A~~~~~~m~~ 499 (798)
++|...|++...
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 888888877653
No 321
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.88 E-value=8.1e-07 Score=89.36 Aligned_cols=175 Identities=7% Similarity=0.006 Sum_probs=137.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHH
Q 003749 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR-DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM-G-NAEA 384 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~-g-~~~~ 384 (798)
..+..++|+++++.++..+ +-+..+|+..-..+...| ++++++.+++.++.... -+..+|+.-...+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHH
Confidence 3445678999999999985 346667888888888888 59999999999998753 4888899888888887 7 8899
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-----
Q 003749 385 ADHWFEEAKERHATLNAIIYGNIIYAQCQTRNME--------RAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN----- 451 (798)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~----- 451 (798)
++++++++++.+.. |..+|+.-..++.+.|.++ ++++.++++++.+ ..|..+|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 99999999988655 7888887777777766666 8888888888876 5578888888888877776
Q ss_pred --HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH
Q 003749 452 --EEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKV 487 (798)
Q Consensus 452 --~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 487 (798)
++++++.++++...... |...|+.+-..+.+.|+.
T Consensus 222 ~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCC
Confidence 67888888888776443 677777777767666653
No 322
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.88 E-value=2.1e-08 Score=92.40 Aligned_cols=162 Identities=7% Similarity=0.022 Sum_probs=105.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH-H
Q 003749 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA-Q 411 (798)
Q Consensus 333 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 411 (798)
.+..+...+.+.|++++|+..|++.++.. +.+...+..+...|.+.|++++|+..|+++..... +...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 45566677788888888888888877653 23677888888888888888888888888776543 43333322212 1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHHcCCHHHH
Q 003749 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSP-SIISYGCLINLYTKIGKVSKA 490 (798)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A 490 (798)
.+.+...+|.+.+++.++.. +.+...+..+..++...|++++|+..|+++.+....+ +...+..+..++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22223334666777766653 3356667777777777777777777777776654321 244666667777777777777
Q ss_pred HHHHHHHH
Q 003749 491 LEVSKVMK 498 (798)
Q Consensus 491 ~~~~~~m~ 498 (798)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666554
No 323
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.87 E-value=2.5e-08 Score=101.39 Aligned_cols=199 Identities=12% Similarity=0.043 Sum_probs=112.4
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 003749 343 VGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK-MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAE 421 (798)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 421 (798)
..|++++|.+++++..+.. ... +.+ .+++++|...|+++ +.+|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3577888988888877641 111 122 57888888888875 34677889999999
Q ss_pred HHHHHHHHcCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHHHHHHcCCHHHHH
Q 003749 422 ALVRDMEEEGIDA-----PIDIYHMMMDGYTIIGNEEKCLIVFERLKEC----GFS-PSIISYGCLINLYTKIGKVSKAL 491 (798)
Q Consensus 422 ~~~~~m~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~ 491 (798)
+.|.+..+..... -..+|+.+..+|...|++++|+..|++..+. |-. .-..+++.+..+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 8888776532100 1345667777777777777777777776543 100 012455556666666 6666666
Q ss_pred HHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CC-HHHHHHHHHHHHcCCChHHHH
Q 003749 492 EVSKVMKSSGIKH-----NMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK----PD-VVLYNNIIRAFCGMGNMDRAI 561 (798)
Q Consensus 492 ~~~~~m~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~-~~~~~~li~~~~~~g~~~~A~ 561 (798)
..|++..+..... ...++..+...|.+.|++++|+..|++..+.... .. ...+..++.++...|++++|+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6666655421000 0234445555555556666665555555442100 00 113333444444445555555
Q ss_pred HHHHHHH
Q 003749 562 HIVKEMQ 568 (798)
Q Consensus 562 ~~~~~~~ 568 (798)
..|++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 5555544
No 324
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.87 E-value=4.6e-08 Score=109.04 Aligned_cols=151 Identities=15% Similarity=0.103 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003749 263 REWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYA 342 (798)
Q Consensus 263 ~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 342 (798)
.++|...|++++..++. +...|..+...|.+.|++++|++.|++..+.. ..+...+..+..+|.
T Consensus 5 ~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 68 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQ---------------DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRW 68 (568)
T ss_dssp ----------------C---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 38899999999988886 66778889999999999999999999999874 446788999999999
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc---CChHH
Q 003749 343 VGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT---RNMER 419 (798)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~ 419 (798)
..|++++|++.|++.++.. +.+...|..+..+|.+.|++++|++.|+++.+.+.. +..++..+..++... |++++
T Consensus 69 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~ 146 (568)
T 2vsy_A 69 TQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDV 146 (568)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHH
Confidence 9999999999999999874 336889999999999999999999999999887543 678888999999999 99999
Q ss_pred HHHHHHHHHHcC
Q 003749 420 AEALVRDMEEEG 431 (798)
Q Consensus 420 A~~~~~~m~~~~ 431 (798)
|.+.+++..+.+
T Consensus 147 A~~~~~~al~~~ 158 (568)
T 2vsy_A 147 LSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC
Confidence 999999998875
No 325
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.86 E-value=4.8e-08 Score=108.94 Aligned_cols=155 Identities=10% Similarity=-0.105 Sum_probs=121.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003749 309 RGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHW 388 (798)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 388 (798)
.|++++|++.|+++.+.. ..+...|..+...|.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478999999999998874 4467889999999999999999999999999874 33688999999999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 003749 389 FEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII---GNEEKCLIVFERLKEC 465 (798)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 465 (798)
|++..+.+.. +...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+..+|... |+.++|.+.|++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999987543 68899999999999999999999999999875 45678899999999999 9999999999999887
Q ss_pred CC
Q 003749 466 GF 467 (798)
Q Consensus 466 ~~ 467 (798)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 326
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.81 E-value=7.4e-08 Score=82.78 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=74.4
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...+..+.+.|.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|++++|+..|++.++.+ +.+...|..++.+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 3456667777777777777777777777764 4466677777777777777777777777777754 2256677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (798)
|...|++++|++.|++.++.++. +..++..+
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l 121 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPS-NEEAREGV 121 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence 77777777777777777766432 44444433
No 327
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.76 E-value=6.5e-09 Score=99.52 Aligned_cols=73 Identities=22% Similarity=0.277 Sum_probs=63.1
Q ss_pred CchHHHHHHhcccCcceEEEEecCC---CCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecccccchh
Q 003749 163 IKKHLVMEFFRQFGPIKNVILIKGY---NNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLK 237 (798)
Q Consensus 163 ~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~~~~~~~ 237 (798)
-.+++|++.|++||.|.++.|.++. +.+|+++|++||+|.+.++|.+|+..| ||..++||.|.+.+.....+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l--~gr~~~gr~i~~~~~~~~~f~ 216 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL--NGRWFAGRKVVAEVYDQERFD 216 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHH--TTCBSSSSBCEEEECCHHHHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHh--cCceECCeEEEEEEcCHHHhh
Confidence 3457899999999999999998541 346689999999999999999999999 999999999999998655433
No 328
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.74 E-value=1.8e-07 Score=90.86 Aligned_cols=186 Identities=10% Similarity=-0.006 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHH-------HHHHHHcCChHHHHHHHHHHHHC-----------
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLM-------VNYYARRGDMHRARQTFENMRAR----------- 325 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~----------- 325 (798)
..|++.|.++++.+|. .+..|..+ ...+...++..+++..+.+....
T Consensus 23 ~~A~~~F~~a~~~dP~---------------~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 23 ARSLDLFTEITNYDES---------------ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHHHHHHHHCTT---------------CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred HHHHHHHHHHHHhChh---------------hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 8999999999999997 34444444 34444445555566555555542
Q ss_pred -CCC--------CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003749 326 -GIE--------PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH 396 (798)
Q Consensus 326 -~~~--------~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (798)
|.- .-...+..+..+|...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+......
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~ 165 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP 165 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC
Confidence 100 002234556677888899999999988887653 333377777778888999999999888665431
Q ss_pred CCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003749 397 ATL-NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAP--IDIYHMMMDGYTIIGNEEKCLIVFERLKECG 466 (798)
Q Consensus 397 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (798)
... ...++..+..++.+.|++++|++.|++.......|. ...+..+..++.+.|+.++|..+|+++....
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 000 134677788888888888888888888875433232 3466777777888888888888888887753
No 329
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.73 E-value=5.8e-06 Score=82.83 Aligned_cols=167 Identities=7% Similarity=-0.094 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHH---HHHHHHc-------CChHHHHHHHHHHHHCCCCCCHHH
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLM---VNYYARR-------GDMHRARQTFENMRARGIEPTLHV 333 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~-------g~~~~A~~~~~~~~~~~~~~~~~~ 333 (798)
++|+..+++++..||.+. ..|+.- +...... ..+++++.+++.+.... +-+..+
T Consensus 47 ~eaL~~t~~~L~~nP~~y---------------taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~a 110 (331)
T 3dss_A 47 ESVLELTSQILGANPDFA---------------TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT 110 (331)
T ss_dssp HHHHHHHHHHHTTCTTCH---------------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHCchhH---------------HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHH
Confidence 579999999999999853 222221 1111111 12678999999998875 457778
Q ss_pred HHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003749 334 YTNLIHAYAVGR--DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN-AEAADHWFEEAKERHATLNAIIYGNIIYA 410 (798)
Q Consensus 334 ~~~ll~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (798)
|+.-..++.+.+ ++++++.+++++++... -|..+|+.-.-.+.+.|. ++++++.++++++.++. |..+|+....+
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~l 188 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 888888888888 48999999999998753 488899988888888888 68999999999988654 78888877766
Q ss_pred HHhc--------------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 003749 411 QCQT--------------RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII 449 (798)
Q Consensus 411 ~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 449 (798)
+.+. +.++++++.+.+.+... +-|..+|+.+-..+.+.
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSS
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 6655 34667777777777664 44666666554444433
No 330
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=7.7e-07 Score=84.64 Aligned_cols=129 Identities=15% Similarity=0.082 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (798)
.+..+...+...|++++|+..|+++. .++..+|..+...|.+.|++++|+..|++.++.. +.+...|..++.+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34566778888999999999998774 4578888999999999999999999999988864 346788889999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC---------------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 378 KMGNAEAADHWFEEAKERHATL---------------NAIIYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 431 (798)
+.|++++|+..|+++.+..... ...++..+..+|.+.|++++|.+.|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999988754321 12677778888888888888888888887764
No 331
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=3.4e-07 Score=92.27 Aligned_cols=162 Identities=9% Similarity=-0.055 Sum_probs=76.6
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-C----hhhHHHH
Q 003749 338 IHAYAVGRDMEEALSCVRKMKEEGI-EMS----LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL-N----AIIYGNI 407 (798)
Q Consensus 338 l~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l 407 (798)
+..+...|++++|..++++..+... .++ ...+..+...+...|++++|+..|+++....... + ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3444445555555555555444211 011 0112234444444455555555555554421111 1 1134555
Q ss_pred HHHHHhcCChHHHHHHHHHHHH----c-CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHH
Q 003749 408 IYAQCQTRNMERAEALVRDMEE----E-GID-APIDIYHMMMDGYTIIGNEEKCLIVFERLKEC----GFSPS-IISYGC 476 (798)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~m~~----~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~ 476 (798)
..+|...|++++|++.|+++.+ . +.. ....++..+...|...|++++|+..+++..+. +.... ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 5555555555555555555442 1 101 11234555666666666666666666655432 11111 455666
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHH
Q 003749 477 LINLYTKIGK-VSKALEVSKVMKS 499 (798)
Q Consensus 477 li~~~~~~g~-~~~A~~~~~~m~~ 499 (798)
+..+|.+.|+ +++|++.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 6666666663 4666666666543
No 332
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.70 E-value=4e-07 Score=78.12 Aligned_cols=97 Identities=12% Similarity=0.003 Sum_probs=63.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003749 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412 (798)
Q Consensus 333 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (798)
.+..+...|.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|++++|+..|+++++.+.. +..+|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 45556666777777777777777766653 235666677777777777777777777776665433 5566666666666
Q ss_pred hcCChHHHHHHHHHHHHcC
Q 003749 413 QTRNMERAEALVRDMEEEG 431 (798)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~~ 431 (798)
..|++++|++.|++.++..
T Consensus 93 ~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC
Confidence 6666666666666666653
No 333
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=7.4e-07 Score=89.70 Aligned_cols=127 Identities=9% Similarity=-0.021 Sum_probs=60.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC-C----hhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC----hhhHH
Q 003749 372 IVGGFAKMGNAEAADHWFEEAKERHATL-N----AIIYGNIIYAQCQTRNMERAEALVRDMEEE--GIDAP----IDIYH 440 (798)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~~~----~~~~~ 440 (798)
++..+...|++++|+..|+++....... + ..+++.+..+|...|++++|.+.|++..+. ....+ ..+++
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 3344444455555555555444321110 0 224444555555555555555555544421 00010 13455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC----CCc-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 003749 441 MMMDGYTIIGNEEKCLIVFERLKECG----FSP-SIISYGCLINLYTKIGKVSKA-LEVSKVMK 498 (798)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 498 (798)
.+...|...|++++|+..+++..+.. ... -..+|..+..+|.+.|++++| ...+++..
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 55555666666666666655554321 000 144566666666666666666 55555544
No 334
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=8.8e-07 Score=84.24 Aligned_cols=126 Identities=15% Similarity=0.080 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003749 614 FNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCK 693 (798)
Q Consensus 614 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 693 (798)
+..+...+...|++++|+..|++.. .++...|..+..+|...|++++|++.|+++++.... +...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHH
Confidence 3444555666777777777776653 346667777777777777777777777777766432 56667777777777
Q ss_pred cCChHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003749 694 SGRMQSALAVTKEMSAQKIPRNT----------------FVYNILIDGWARRGDVWEAADLMQQMKQE 745 (798)
Q Consensus 694 ~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (798)
.|++++|...++++.+.. +.+. ..+..++.+|.+.|++++|.+.|++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 777777777777776643 2222 56777777777778888888877777764
No 335
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.68 E-value=1.7e-05 Score=79.48 Aligned_cols=190 Identities=8% Similarity=-0.051 Sum_probs=136.7
Q ss_pred HHHcCChH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 306 YARRGDMH-RARQTFENMRARGIEPTLHVYTNLIHAYAVGRD----------MEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 306 ~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
..+.|.+. +|+.+++.++..+ +-+..+||.--..+...+. +++++.+++.++... +-+..+|+.-.-
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34566665 8999999999874 3345567776666655444 688999999998875 348888998888
Q ss_pred HHHhcCC--HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--
Q 003749 375 GFAKMGN--AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN-MERAEALVRDMEEEGIDAPIDIYHMMMDGYTII-- 449 (798)
Q Consensus 375 ~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-- 449 (798)
++.+.|+ +++++.+++++.+.+.. |..+|+.-..++...|. ++++++.++++++.+ +.|..+|+.....+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence 8888884 89999999999988655 88888888888888888 588999999999876 55778888777766655
Q ss_pred ------------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHC
Q 003749 450 ------------GNEEKCLIVFERLKECGFSPSIISYGCLINLYTKI-----------GKVSKALEVSKVMKSS 500 (798)
Q Consensus 450 ------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~ 500 (798)
+.++++++.+.+....... |..+|+-+-..+.+. +.++++++.++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 3466777777777765433 566665444444443 2355555555555553
No 336
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.67 E-value=3e-06 Score=85.17 Aligned_cols=162 Identities=9% Similarity=-0.053 Sum_probs=88.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C----hhhHH
Q 003749 371 IIVGGFAKMGNAEAADHWFEEAKERHAT-LN----AIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA-P----IDIYH 440 (798)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~-~----~~~~~ 440 (798)
..+..+.+.|++++|++++++....... ++ ...+..+...+...+++++|.+.|++..+..... + ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3466778888888888888888764321 11 1122335555666677777777777777632221 1 22466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----CCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHH
Q 003749 441 MMMDGYTIIGNEEKCLIVFERLKEC-----GFSP-SIISYGCLINLYTKIGKVSKALEVSKVMKSS----GIKHN-MKTY 509 (798)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~ 509 (798)
.+...|...|++++|+..|++..+. +..+ ...+|..+..+|.+.|++++|+..+++..+. +.... ...|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 6667777777777777777666531 1111 1224555566666666666666665555431 11111 3344
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHH
Q 003749 510 SMLINGFLKLK-DWANVFAVFEDV 532 (798)
Q Consensus 510 ~~ll~~~~~~~-~~~~a~~~~~~~ 532 (798)
..+..+|.+.| ++++|...|++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHH
Confidence 44444444444 234554444443
No 337
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.66 E-value=7.4e-07 Score=80.71 Aligned_cols=129 Identities=16% Similarity=0.055 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
..+..+...+...|++++|+..|++..+.. ..+..++..+..+|...|++++|+..|++.++.. +.+..+|..++.+|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 445667777777888888888888877763 3456677777777777788888888887777753 33566777777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHH--HHHHHHHhcCChHHHHHHHHHHH
Q 003749 377 AKMGNAEAADHWFEEAKERHATLNAIIYG--NIIYAQCQTRNMERAEALVRDME 428 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~ 428 (798)
.+.|++++|+..|+++...... +...+. .++..+.+.|++++|.+.+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777777765332 333442 23333556666666666665543
No 338
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.65 E-value=1.1e-07 Score=84.31 Aligned_cols=96 Identities=10% Similarity=0.046 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (798)
.+..+...+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|+..|++.++.. +-+...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 44455555555566666666666555553 3345555555555555555555555555555543 124455555555555
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 003749 378 KMGNAEAADHWFEEAKER 395 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~ 395 (798)
+.|++++|+..|+++.+.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555544
No 339
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.64 E-value=7.1e-08 Score=99.15 Aligned_cols=132 Identities=14% Similarity=0.020 Sum_probs=87.5
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT--------------LHVYTNLIHAYAVGRDMEEALSCVRKMKEE 360 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 360 (798)
+...|..+...|.+.|++++|+..|+++++..-... ..+|..+..+|.+.|++++|+..|++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677888899999999999999999998742211 356666666777777777777777776665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 003749 361 GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERA-EALVRDME 428 (798)
Q Consensus 361 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 428 (798)
. +.+...|..+..+|...|++++|+..|+++++.... +..++..+..++.+.|+.++| ..+++.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 235666666666677777777777777666665332 455666666666666666665 33444443
No 340
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.62 E-value=1.4e-06 Score=78.89 Aligned_cols=130 Identities=12% Similarity=0.058 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKAC 691 (798)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 691 (798)
..+..+...+...|++++|...|++..+.. ..+...|..+..++...|++++|+..++++++.... +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 445556666777777777777777776653 345667777777778888888888888887776533 567777778888
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHH
Q 003749 692 CKSGRMQSALAVTKEMSAQKIPRNTFVYNILID--GWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 692 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~m~~ 744 (798)
...|++++|...++++.+.. +.+...+..+.. .+...|++++|++.+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888877654 345555533333 36677888888888776543
No 341
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.61 E-value=1.7e-06 Score=87.12 Aligned_cols=164 Identities=8% Similarity=-0.096 Sum_probs=89.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CC--hhhH
Q 003749 370 SIIVGGFAKMGNAEAADHWFEEAKERHATLN-----AIIYGNIIYAQCQTRNMERAEALVRDMEEEGID---AP--IDIY 439 (798)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~---~~--~~~~ 439 (798)
...+..+...|++++|++.+++..+...... ...+..+...+...|++++|++.+++..+.... .. ..+|
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3344444555555555555554444321110 112333555566667777777777766643211 11 3366
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCC-CHHH
Q 003749 440 HMMMDGYTIIGNEEKCLIVFERLKEC----GFSP--SIISYGCLINLYTKIGKVSKALEVSKVMKSSG----IKH-NMKT 508 (798)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~-~~~~ 508 (798)
+.+...|...|++++|+..|++..+. .... ...++..+..+|...|++++|+..+++..+.. ... -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 66777777777777777777766521 1111 11466666777777777777777776665421 111 1455
Q ss_pred HHHHHHHHHhcCCHHHH-HHHHHHHH
Q 003749 509 YSMLINGFLKLKDWANV-FAVFEDVM 533 (798)
Q Consensus 509 ~~~ll~~~~~~~~~~~a-~~~~~~~~ 533 (798)
|..+..+|.+.|++++| ...+++..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 66666777777777777 55555544
No 342
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.60 E-value=1.5e-06 Score=74.06 Aligned_cols=112 Identities=21% Similarity=0.221 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
..|..+...|...|++++|+++|+++.+.. ..+..++..+...|.+.|++++|+.+|+++.+.. +.+..++..++..|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 445556666666667777777666666553 3345566666666666666666666666666543 22455666666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003749 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (798)
.+.|++++|+..|+++..... .+...+..+..++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 666666666666666655432 1333444443333
No 343
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.60 E-value=2.1e-07 Score=92.91 Aligned_cols=98 Identities=17% Similarity=0.048 Sum_probs=59.7
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...+..+...+...|++++|+..|+++++.. +.+...|..+..+|.+.|++++|+..+++.++.. +.+...+..++.+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445556666666666666666666666652 2355566666666666666666666666666543 2245566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 003749 376 FAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~ 395 (798)
|.+.|++++|+..|+++.+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666665543
No 344
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=2.6e-07 Score=92.22 Aligned_cols=99 Identities=17% Similarity=0.063 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (798)
+...+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|+++.+.+. .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 45667778888888888888888888888764 33778888888888888888888888888887643 36778888888
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 003749 410 AQCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~ 430 (798)
+|...|++++|++.|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888887764
No 345
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.59 E-value=4e-07 Score=80.66 Aligned_cols=95 Identities=13% Similarity=-0.039 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 003749 368 TYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYT 447 (798)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 447 (798)
.+..+...+.+.|++++|+..|+++...++. +...|..+..+|.+.|++++|++.|++.++.. +.+...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 4444555555555555555555555544322 44455555555555555555555555555443 223444445555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 003749 448 IIGNEEKCLIVFERLKE 464 (798)
Q Consensus 448 ~~g~~~~A~~~~~~~~~ 464 (798)
..|++++|+..|++..+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555444
No 346
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.58 E-value=7.7e-07 Score=86.46 Aligned_cols=189 Identities=9% Similarity=-0.078 Sum_probs=120.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHccCChHHHHHHHHHHHHc------------CCC-----
Q 003749 308 RRGDMHRARQTFENMRARGIEPTLHVYTNL-------IHAYAVGRDMEEALSCVRKMKEE------------GIE----- 363 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~g~~~~A~~~~~~m~~~------------g~~----- 363 (798)
+.+++.+|++.|.++.+.. +-....|+.+ ...+.+.++..+++..+..-++. |+-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5788889999999988874 4456677777 56666666666666666555441 100
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhh
Q 003749 364 ---MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAP--IDI 438 (798)
Q Consensus 364 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~ 438 (798)
--...+..+...+...|++++|.++|+.+...+. +......+...+.+.+++++|+..|+...... .+. ..+
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p--~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS--EHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 0023345566777788888888888887766532 22266666677778888888888887544321 110 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003749 439 YHMMMDGYTIIGNEEKCLIVFERLKECGFSPS--IISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (798)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (798)
+..+..++...|++++|+..|++.......|. ......+..++.+.|+.++|..+|+++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66667777777777777777777764322132 234555666677777777777777777665
No 347
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=4.9e-07 Score=85.19 Aligned_cols=121 Identities=14% Similarity=0.027 Sum_probs=66.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCC
Q 003749 307 ARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE----GI-EMSLVTYSIIVGGFAKMGN 381 (798)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~l~~~~~~~g~ 381 (798)
...|++++|.++++.+... ......+++.+...|...|++++|+..|++.++. +. .....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3567777777755544332 1234556677777777777777777777776651 11 1123456666667777777
Q ss_pred HHHHHHHHHHHHhc---CC-C--CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003749 382 AEAADHWFEEAKER---HA-T--LNAIIYGNIIYAQCQTRNMERAEALVRDME 428 (798)
Q Consensus 382 ~~~A~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 428 (798)
+++|+..|++.... .. . ....++..+..++...|++++|.+.+++..
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 77777777665543 00 0 112334455555555555555555555544
No 348
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.57 E-value=6.1e-07 Score=79.53 Aligned_cols=99 Identities=9% Similarity=-0.056 Sum_probs=68.7
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
+...+..+...+.+.|++++|+..|+.++... +.+...|..+..+|...|++++|+..|++.++.. +.+...|..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 33445566677777777777777777777663 3466667777777777777777777777777653 225666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 003749 375 GFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~ 395 (798)
+|...|++++|+..|+++++.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777654
No 349
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.56 E-value=1.5e-06 Score=74.84 Aligned_cols=118 Identities=12% Similarity=0.068 Sum_probs=75.4
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...+..+...+...|++++|+..|+++.+.. ..+...+..+..+|...|++++|+..+++..+.. +.+...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3445566667777777777777777776653 3355666677777777777777777777776653 2246666666677
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN 416 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 416 (798)
|.+.|++++|+..|+++.+.... +...+..+..++.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 77777777777777766665322 45555555555555554
No 350
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.56 E-value=3.1e-06 Score=72.03 Aligned_cols=116 Identities=20% Similarity=0.233 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003749 646 EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDG 725 (798)
Q Consensus 646 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 725 (798)
...|..+...+...|++++|.++|+++.+... .+..++..+..++.+.|++++|..+++++.+.. +.+...+..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 34555566666666666666666666665532 245566666666666777777777766666543 3456666667777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003749 726 WARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKA 764 (798)
Q Consensus 726 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~ 764 (798)
|...|++++|...++++.+.. .-+...+..+...+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 777777777777777766542 22344555555544443
No 351
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.56 E-value=1.3e-06 Score=75.58 Aligned_cols=118 Identities=12% Similarity=0.062 Sum_probs=77.0
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
+...|..+...+.+.|++++|+..|+++.+.. ..+..++..+..+|...|++++|+..|++..+.. +.+..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34556667777777777777777777777653 3356667777777777777777777777777653 235666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTR 415 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 415 (798)
+|.+.|++++|+..|+++.+.... +...+..+..++.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 777777777777777776665322 3444555555544433
No 352
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.55 E-value=6.6e-07 Score=84.31 Aligned_cols=156 Identities=11% Similarity=-0.042 Sum_probs=92.4
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhcCC
Q 003749 342 AVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH-----ATLNAIIYGNIIYAQCQTRN 416 (798)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~ 416 (798)
...|++++|.++++.+... ......++..+...|...|++++|+..|++....- ......++..+..+|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4578888888865555432 22356778888888888899999988888876621 11234566667777777778
Q ss_pred hHHHHHHHHHHHHc----CCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHHcC
Q 003749 417 MERAEALVRDMEEE----GID--APIDIYHMMMDGYTIIGNEEKCLIVFERLKEC----GFSP-SIISYGCLINLYTKIG 485 (798)
Q Consensus 417 ~~~A~~~~~~m~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g 485 (798)
+++|.+.+++..+. +.. ....++..+...+...|++++|+..+++..+. +... -..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777766553 101 11234556666666667777776666665432 1000 0123345555566666
Q ss_pred CHHHHHHHHHHHH
Q 003749 486 KVSKALEVSKVMK 498 (798)
Q Consensus 486 ~~~~A~~~~~~m~ 498 (798)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666665555544
No 353
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.55 E-value=1e-06 Score=80.97 Aligned_cols=117 Identities=10% Similarity=0.202 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHA-YA 342 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~ 342 (798)
+.|...|.+++..++. +...|..+...|...|++++|+..|+++.+.. +.+...+..+..+ |.
T Consensus 27 ~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~ 90 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQ---------------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYY 90 (177)
T ss_dssp CCCCHHHHHHHHHCCS---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 8889999999988886 66778888899999999999999999998874 3467778888888 77
Q ss_pred ccCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003749 343 VGRDM--EEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHA 397 (798)
Q Consensus 343 ~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 397 (798)
..|++ ++|+..|+++++.. +.+...+..++..|.+.|++++|+..|+++.+...
T Consensus 91 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 91 QASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred hcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 88998 99999999998874 33678888899999999999999999999888743
No 354
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.55 E-value=1.4e-06 Score=75.30 Aligned_cols=117 Identities=11% Similarity=-0.044 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (798)
+...+..+...+.+.|++++|+..|++..+.. +.+..++..++.+|...|++++|+..|+++.+.... +..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 44456666666777777777777777766653 225666666666676777777777777766665322 4556666666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 003749 410 AQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII 449 (798)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 449 (798)
+|.+.|++++|.+.|++..+.. +.+...+..+..++...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 6666666666666666666543 22334444444444433
No 355
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.54 E-value=3e-06 Score=72.85 Aligned_cols=118 Identities=11% Similarity=0.025 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (798)
..+..+...+...|++++|...|+++.+.... +...+..+..+|...|++++|...+++..+.. +.+...+..++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 45556666666677777777777776665432 56666667777777777777777777776653 44566677777777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 003749 727 ARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDM 767 (798)
Q Consensus 727 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~ 767 (798)
.+.|++++|.+.+++..+.. ..+...+..+...+.+.|+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 77777777777777776642 22456666666676666654
No 356
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.52 E-value=3.8e-07 Score=80.87 Aligned_cols=99 Identities=13% Similarity=-0.041 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (798)
+...+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|+++...+.. +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 33455556666666677777777777666653 225666666666666777777777777766665332 4556666666
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 003749 410 AQCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~ 430 (798)
+|...|++++|.+.|++.++.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666554
No 357
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.52 E-value=8.7e-07 Score=81.46 Aligned_cols=119 Identities=8% Similarity=0.035 Sum_probs=50.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--HH
Q 003749 588 RAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHG-YASLGDT--GK 664 (798)
Q Consensus 588 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~-~~~~g~~--~~ 664 (798)
..|++++|+..+++..+.... +...|..+...|...|++++|+..|+++.+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 344445555555444443221 34444444444445555555555554444332 1233344444444 3344444 44
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003749 665 AFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA 709 (798)
Q Consensus 665 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (798)
|..+|+++++.... +...+..+..+|...|++++|...++++.+
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 44444444443322 334444444444444444444444444444
No 358
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.50 E-value=5.9e-07 Score=79.11 Aligned_cols=98 Identities=11% Similarity=-0.026 Sum_probs=77.7
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...+..+...+.+.|++++|+..|+++...+ +.+...|..+..+|.+.|++++|+..|++.++.+ +.+...|..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3445667777888888888888888888774 4467778888888888888888888888888764 3366778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 003749 376 FAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~ 395 (798)
|...|++++|+..|+++...
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888765
No 359
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.50 E-value=2.2e-06 Score=87.93 Aligned_cols=132 Identities=11% Similarity=-0.077 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 611 VHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN--------------EHTYTTIMHGYASLGDTGKAFEYFTKLRNEG 676 (798)
Q Consensus 611 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--------------~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~ 676 (798)
...+..+...|.+.|++++|+..|++.++...... ...|..+..+|.+.|++++|+..|+++++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44555666666667777777777776665431111 4678888888888888888888888888876
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 003749 677 LELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEA-ADLMQQMKQ 744 (798)
Q Consensus 677 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 744 (798)
.. +...|..+..+|...|++++|+..|+++.+.. +.+...+..+..++.+.|+.++| ..+++.|..
T Consensus 227 p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 SN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 77888888888888889999988888888765 56777888888888888888887 456666653
No 360
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.46 E-value=3.2e-07 Score=86.22 Aligned_cols=86 Identities=7% Similarity=-0.054 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 003749 403 IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYT 482 (798)
Q Consensus 403 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 482 (798)
++..+..+|.+.|++++|+..+++.++.. +.+..++..+..+|...|++++|+..|++..+.... +...+..+..++.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence 44444444444455555555544444432 223444444444445555555555555444443211 3334444444444
Q ss_pred HcCCHHHH
Q 003749 483 KIGKVSKA 490 (798)
Q Consensus 483 ~~g~~~~A 490 (798)
..++.+++
T Consensus 168 ~~~~~~~~ 175 (198)
T 2fbn_A 168 KLKEARKK 175 (198)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 44433333
No 361
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.45 E-value=4.2e-06 Score=71.66 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (798)
..|..+...+.+.|++++|+..|+++++.... +...|..+..+|.+.|++++|+..++++++.+ +.+...|..++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 45666667777777888888888777776543 66777777778888888888888888777765 45677777788888
Q ss_pred HHcCCHHHHHHHHHHHHHc
Q 003749 727 ARRGDVWEAADLMQQMKQE 745 (798)
Q Consensus 727 ~~~g~~~~A~~~~~~m~~~ 745 (798)
...|++++|++.|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 8888888888888877763
No 362
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.45 E-value=4.1e-07 Score=85.52 Aligned_cols=131 Identities=15% Similarity=-0.001 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPN---------------EHTYTTIMHGYASLGDTGKAFEYFTKLRNEG 676 (798)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---------------~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~ 676 (798)
..+..+...+...|++++|+..|++.++...... ...|..+..+|...|++++|+..++++++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3445555566666677777776666665321111 2566777777777788888888777777764
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 003749 677 LELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAA-DLMQQMKQ 744 (798)
Q Consensus 677 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~ 744 (798)
.. +...+..+..+|...|++++|...|+++.+.. +.+...+..+..++...|+.+++. ..+..|..
T Consensus 119 p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 KN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33 56677777777777888888888777777654 456667777777777666666655 44555543
No 363
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.43 E-value=5e-06 Score=71.18 Aligned_cols=97 Identities=19% Similarity=0.137 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
..|..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345566667777777777777777777663 3456667777777777777777777777777653 22566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 003749 377 AKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~ 395 (798)
...|++++|+..|+++.+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777777776654
No 364
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.40 E-value=4.7e-06 Score=71.46 Aligned_cols=108 Identities=8% Similarity=0.029 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCC----HHHHH
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK--IPRN----TFVYN 720 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~ 720 (798)
..+..+...+.+.|++++|++.|+++++.... +...|..+..+|.+.|++++|+..+++.++.+ ...+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 35566677777777777777777777776543 56677777777777777777777777766432 1111 23667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 721 ILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSF 757 (798)
Q Consensus 721 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 757 (798)
.++.++...|++++|++.|++.++. .||..+...|
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 7778888888888888888887763 4666555443
No 365
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.38 E-value=1.3e-05 Score=67.19 Aligned_cols=97 Identities=20% Similarity=0.110 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
..+..+...+...|++++|+..|+.+.... +.+...+..+..+|...|++++|+..+++..+.. +.+...+..++.+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 445566667777777777777777776653 3356666667777777777777777777776653 22566666677777
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 003749 377 AKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~ 395 (798)
.+.|++++|+..|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 7777777777777776655
No 366
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.36 E-value=6e-06 Score=74.62 Aligned_cols=99 Identities=13% Similarity=0.041 Sum_probs=77.4
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...|..+...|.+.|++++|+..|++.++.. ..+...|..+..+|.+.|++++|+..|++.++.. +-+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4556777788888888888888888888764 3467778888888888888888888888888764 3367778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcC
Q 003749 376 FAKMGNAEAADHWFEEAKERH 396 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~ 396 (798)
|.+.|++++|+..|+++++..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 888888888888888887764
No 367
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.35 E-value=5.5e-06 Score=72.73 Aligned_cols=98 Identities=9% Similarity=-0.065 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003749 331 LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (798)
Q Consensus 331 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (798)
...+..+...+.+.|++++|+..|++.++.+ +.+...|..+..+|.+.|++++|+..|+++...+.. +...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 3455666677777888888888888877764 336777778888888888888888888888776433 56677777777
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 003749 411 QCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~ 430 (798)
|...|++++|.+.|++.++.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888777664
No 368
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.35 E-value=7.2e-06 Score=70.31 Aligned_cols=56 Identities=18% Similarity=0.092 Sum_probs=21.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAK 393 (798)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (798)
+...|.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|++.|++.+
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333444444444444444443332 1133334444444444444444444444433
No 369
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.34 E-value=8.8e-06 Score=73.50 Aligned_cols=96 Identities=11% Similarity=0.046 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (798)
..|..+...+...|++++|++.|+++++.... +...|..+..+|.+.|++++|+..++++++.+ +.+...|..+..+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44555555666666666666666666655432 55566666666666666666666666666544 34555666666666
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 003749 727 ARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 727 ~~~g~~~~A~~~~~~m~~ 744 (798)
...|++++|++.|++.++
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 666666666666666654
No 370
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.33 E-value=6.2e-06 Score=70.84 Aligned_cols=114 Identities=7% Similarity=0.018 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC--CCC----HHHHH
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKI--PRN----TFVYN 720 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~ 720 (798)
..|..+...+...|++++|..+|+++.+.... +...+..+..+|...|++++|..+++++....- ..+ ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34556666666777777777777776665432 566666677777777777777777776665420 111 55677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003749 721 ILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSK 763 (798)
Q Consensus 721 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~ 763 (798)
.++.+|...|++++|.+.|+++.+. .|+...+..+......
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 7777777777777787777777764 3455555555544443
No 371
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.32 E-value=1.5e-05 Score=69.17 Aligned_cols=99 Identities=11% Similarity=-0.061 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003749 644 PNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILI 723 (798)
Q Consensus 644 p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 723 (798)
.+...|..+...+...|++++|+..|.++++.... +...+..+..+|...|++++|...++++.+.+ +.+...|..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 34556666666666777777777777766665433 56666667777777777777777777766654 44566677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 003749 724 DGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 724 ~~~~~~g~~~~A~~~~~~m~~ 744 (798)
.+|...|++++|+..|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777776654
No 372
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.30 E-value=2.5e-05 Score=65.38 Aligned_cols=95 Identities=15% Similarity=0.056 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003749 648 TYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWA 727 (798)
Q Consensus 648 t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 727 (798)
.+..+...+...|++++|...|+++.+.... +...+..+..+|...|++++|...++++.+.. +.+...+..++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444444555555555555555555544322 44455555555555555555555555555433 334455555555555
Q ss_pred HcCCHHHHHHHHHHHHH
Q 003749 728 RRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 728 ~~g~~~~A~~~~~~m~~ 744 (798)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555554
No 373
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=3.1e-05 Score=82.73 Aligned_cols=126 Identities=11% Similarity=0.052 Sum_probs=67.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CC
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIEPTL----------------HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE-MS 365 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-~~ 365 (798)
...+...|++++|++.|..+.+....... ..+..+...|.+.|++++|.+.+.++.+.--. .+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45677889999999999999886321111 13566677777777777777777666542100 01
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003749 366 L----VTYSIIVGGFAKMGNAEAADHWFEEAKER----HAT-LNAIIYGNIIYAQCQTRNMERAEALVRDME 428 (798)
Q Consensus 366 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 428 (798)
. .+.+.+...+...|++++|+.+++..... +.. .-..++..++..|...|++++|..+++++.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 1 12223333334456666666666554431 111 112234444555555555555555554443
No 374
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.28 E-value=3.2e-06 Score=65.76 Aligned_cols=72 Identities=17% Similarity=0.342 Sum_probs=65.7
Q ss_pred ccceeecCCCccCchHHHHHHhccc-----CcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQF-----GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~-----g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~ 225 (798)
.++|=+-|||..+++..|+.+...+ |.+..+.++.| -|=|+|+|.|...|.+|.-++ +|..|.||+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-------H~GAivef~d~~~AgKasLaL--~G~ef~gr~ 91 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-------FNGAIIIFRDSKFAAKMLMIL--NGSQFQGKV 91 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-------TTEEEEECSCHHHHHHHHHHH--SSEEETTEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-------CCceEEEEccchhhHHHHhhc--CCeeecCeE
Confidence 4578888999999999999999999 99999999998 577999999999999998888 999999999
Q ss_pred eeeecc
Q 003749 226 LTVKLD 231 (798)
Q Consensus 226 ~~v~~~ 231 (798)
|++.--
T Consensus 92 Lr~gTv 97 (117)
T 2l9w_A 92 IRSGTI 97 (117)
T ss_dssp EEEECH
T ss_pred EEecCH
Confidence 998543
No 375
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.28 E-value=1.2e-05 Score=69.88 Aligned_cols=96 Identities=18% Similarity=0.056 Sum_probs=41.5
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...|..+...+...|++++|+..|+.++... +.+...|..+..+|...|++++|+..|++.++.+ +.+...|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 3344444444444444444444444444432 2233344444444444444444444444444432 1133444444444
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 003749 376 FAKMGNAEAADHWFEEAK 393 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~ 393 (798)
|...|++++|+..|+++.
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 444444444444444443
No 376
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=2.4e-05 Score=83.66 Aligned_cols=196 Identities=10% Similarity=0.018 Sum_probs=118.4
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 003749 338 IHAYAVGRDMEEALSCVRKMKEEGIEMS----------------LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNA 401 (798)
Q Consensus 338 l~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 401 (798)
...+.+.|++++|++.|.++++...... ...+..++..|.+.|++++|.+.+..+.........
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4557788999999999999987532111 124677888888899999998888877653211111
Q ss_pred -----hhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 003749 402 -----IIYGNIIYAQCQTRNMERAEALVRDMEEE----GIDAP-IDIYHMMMDGYTIIGNEEKCLIVFERLKEC--GF-- 467 (798)
Q Consensus 402 -----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-- 467 (798)
.+.+.+...+...|+.++|.++++..... +.... ..++..|+..|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 12233334444667788888777766542 21111 345666777777777777777777776543 11
Q ss_pred Cc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 468 SP-SIISYGCLINLYTKIGKVSKALEVSKVMKSS--GIKHN----MKTYSMLINGFLKLKDWANVFAVFEDVM 533 (798)
Q Consensus 468 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (798)
++ ...++..++..|...|++++|..++++.... .+..+ ...+..+...+...+++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 1345666677777777777777777666532 11111 1234444455555666666666555543
No 377
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=2.7e-05 Score=68.59 Aligned_cols=97 Identities=13% Similarity=0.024 Sum_probs=47.4
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPT----LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSI 371 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 371 (798)
...+..+...+...|++++|+.+|++..+. .|+ ...|..+..+|...|++++|+..|++.++.. +.+...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 344555555555555555555555555544 233 3444444455555555555555555544432 113444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 003749 372 IVGGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
+..+|...|++++|+..|++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 444555555555555555544443
No 378
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=2.2e-05 Score=69.17 Aligned_cols=115 Identities=9% Similarity=-0.070 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhh
Q 003749 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS----LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAII 403 (798)
Q Consensus 328 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 403 (798)
..+...+..+...+.+.|++++|+.+|++.++.. ++ ..+|..+..+|.+.|++++|+..|+++...... +...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHH
Confidence 3467788999999999999999999999999863 45 688999999999999999999999999887433 6788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 003749 404 YGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGY 446 (798)
Q Consensus 404 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 446 (798)
+..+..+|...|++++|.+.|++..+.. +.+..++..+....
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 8999999999999999999999999874 34556666555544
No 379
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.25 E-value=2.8e-05 Score=85.39 Aligned_cols=169 Identities=7% Similarity=-0.081 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHH
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGD----------MHRARQTFENMRARGIEPTLHV 333 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~ 333 (798)
++|.+.+++++..||. +...|+.--.++...|+ ++++++.++.+.+.. +-+..+
T Consensus 46 eeal~~~~~~l~~nP~---------------~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~a 109 (567)
T 1dce_A 46 ESVLELTSQILGANPD---------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT 109 (567)
T ss_dssp HHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHCch---------------hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHH
Confidence 7899999999999998 34445544445555555 899999999999875 457778
Q ss_pred HHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003749 334 YTNLIHAYAVGR--DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG-NAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (798)
Q Consensus 334 ~~~ll~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (798)
|+.-..++.+.+ ++++++++++++++.... +..+|+...-.+.+.| .++++++.++++++.++. |..+|+....+
T Consensus 110 W~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~l 187 (567)
T 1dce_A 110 WHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL 187 (567)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHH
Confidence 999999999999 679999999999998644 8889999988888999 899999999999887655 78888887777
Q ss_pred HHhc--------------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 003749 411 QCQT--------------RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (798)
Q Consensus 411 ~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 451 (798)
+.+. +.++++++.+++.+... +-+..+|+.+...+.+.++
T Consensus 188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred HHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 6653 34556666666666543 3345555555555544444
No 380
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.25 E-value=1.7e-06 Score=92.97 Aligned_cols=125 Identities=16% Similarity=0.084 Sum_probs=71.6
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT--------------LHVYTNLIHAYAVGRDMEEALSCVRKMKEE 360 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 360 (798)
....|..+.+.|.+.|++++|+..|+++++..-... ...|+.+..+|.+.|++++|+..|++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345677788899999999999999999988631111 345555555555555555555555555554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 003749 361 GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAE 421 (798)
Q Consensus 361 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 421 (798)
. +.+...|..+..+|.+.|++++|+..|+++++.... +..++..+..++.+.++.+++.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 3 224555555555555555555555555555554322 3444445555555555444443
No 381
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.25 E-value=7.9e-06 Score=69.32 Aligned_cols=95 Identities=11% Similarity=-0.047 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (798)
+..+...+.+.|++++|+..|+++++.. +.+...|..+..++...|++++|+..|++.++... -+...+..+..+|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 4455666777777777777777777763 34666777777777777777777777777777642 256677777777777
Q ss_pred cCCHHHHHHHHHHHHhc
Q 003749 379 MGNAEAADHWFEEAKER 395 (798)
Q Consensus 379 ~g~~~~A~~~~~~~~~~ 395 (798)
.|++++|+..|+++++.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777654
No 382
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.23 E-value=1.1e-05 Score=69.29 Aligned_cols=98 Identities=16% Similarity=0.169 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CC----HHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE--MS----LVTYS 370 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--~~----~~~~~ 370 (798)
..|..+...|...|++++|+..|+++.+.. ..+...+..+...|...|++++|+..|+++.+.... .+ ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 445666777777788888888887777763 345666777777777777777777777777664211 11 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 003749 371 IIVGGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
.++.+|.+.|++++|++.|+++.+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6777777777777777777776665
No 383
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.22 E-value=1.3e-05 Score=66.47 Aligned_cols=96 Identities=16% Similarity=0.051 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM--SLVTYSIIVGG 375 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l~~~ 375 (798)
.+..+...+...|++++|+..|+++.+.. ..+...+..+..+|...|++++|+..|++.++.. +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34445555555555555555555555542 2244455555555555555555555555555532 22 34455555555
Q ss_pred HHhc-CCHHHHHHHHHHHHhc
Q 003749 376 FAKM-GNAEAADHWFEEAKER 395 (798)
Q Consensus 376 ~~~~-g~~~~A~~~~~~~~~~ 395 (798)
|.+. |++++|++.|+++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555555443
No 384
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.21 E-value=1.1e-05 Score=68.38 Aligned_cols=94 Identities=11% Similarity=0.003 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003749 649 YTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWAR 728 (798)
Q Consensus 649 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 728 (798)
+..+...+.+.|++++|+..|+++++.... +...|..+..++...|++++|+..++++++.+ +.+...+..+..+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344555667777777777777777776543 66677777777777777777777777777655 4566677777777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 003749 729 RGDVWEAADLMQQMKQ 744 (798)
Q Consensus 729 ~g~~~~A~~~~~~m~~ 744 (798)
.|++++|+..+++.++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777765
No 385
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.16 E-value=1.6e-05 Score=65.92 Aligned_cols=97 Identities=18% Similarity=0.033 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPR--NTFVYNILID 724 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 724 (798)
..|..+...+...|++++|...|+++++.... +...+..+..++...|++++|...++++.+.. +. +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 34555666666777777777777777665433 56666677777777777777777777777654 34 5667777777
Q ss_pred HHHHc-CCHHHHHHHHHHHHHc
Q 003749 725 GWARR-GDVWEAADLMQQMKQE 745 (798)
Q Consensus 725 ~~~~~-g~~~~A~~~~~~m~~~ 745 (798)
++.+. |++++|++.+++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 77777 7777777777777654
No 386
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.14 E-value=1.5e-05 Score=85.89 Aligned_cols=110 Identities=14% Similarity=-0.043 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
++|.+.|+++++.++. +...|..+..+|.+.|++++|++.|+++.+.. ..+..+|..+..+|.+
T Consensus 23 ~~A~~~~~~Al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 23 ENAIKFYSQAIELNPS---------------NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp HHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc---------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 8899999999988886 56778888889999999999999999998874 4467788888889999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 003749 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG--FAKMGNAEAADHWFE 390 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 390 (798)
.|++++|++.|++.++... -+...+..+..+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999998887642 245566666666 778888899988888
No 387
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.14 E-value=1.5e-05 Score=71.28 Aligned_cols=97 Identities=19% Similarity=0.138 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcC--CC---CCH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIE-PT----LHVYTNLIHAYAVGRDMEEALSCVRKMKEEG--IE---MSL 366 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g--~~---~~~ 366 (798)
..+..+...|...|++++|+..+++..+.... .+ ..++..+...|...|++++|+..+++..+.. .. ...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34666777777888888888888777654100 01 1256666666777777777777776665421 00 013
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 367 VTYSIIVGGFAKMGNAEAADHWFEEAK 393 (798)
Q Consensus 367 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (798)
.++..+...+...|++++|++.|++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345555566666666666666665554
No 388
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.13 E-value=1.6e-05 Score=71.14 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=14.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHH
Q 003749 333 VYTNLIHAYAVGRDMEEALSCVRKMKE 359 (798)
Q Consensus 333 ~~~~ll~~~~~~g~~~~A~~~~~~m~~ 359 (798)
++..+...|...|++++|+..+++.++
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~ 37 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLL 37 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344455555555555555555555443
No 389
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.11 E-value=0.00012 Score=80.34 Aligned_cols=173 Identities=10% Similarity=0.026 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 003749 592 MKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQ----------MEKAIEILDEMTLAGISPNEHTYTTIMHGYASLG- 660 (798)
Q Consensus 592 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g- 660 (798)
.++|++.++++++.+.. +..+|+.--.++...++ +++++++++++.+.+ +-+..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 46778888888887654 66777776666666666 899999999998875 567889999999999999
Q ss_pred -ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---------
Q 003749 661 -DTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG-RMQSALAVTKEMSAQKIPRNTFVYNILIDGWARR--------- 729 (798)
Q Consensus 661 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 729 (798)
++++++++++++.+...+ +...|+.-..++.+.| .++++++.++++.+.+ +.|...|+....++.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 679999999999998766 8889999999999999 8999999999999877 67888999888888773
Q ss_pred -----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCccc
Q 003749 730 -----GDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQV 769 (798)
Q Consensus 730 -----g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~ 769 (798)
+.++++++++++.+... .-|...|..+...+.+.|..++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56899999999998753 2367789888888888887444
No 390
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.11 E-value=5.9e-05 Score=64.56 Aligned_cols=94 Identities=12% Similarity=-0.013 Sum_probs=63.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 003749 300 GLMVNYYARRGDMHRARQTFENMRARGIEPTL---HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS---LVTYSIIV 373 (798)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~ 373 (798)
..+...+...|++++|+..|+.+.+.. +.+. ..+..+..+|.+.|++++|+..|+++++... .+ ..++..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHH
Confidence 445566677777777777777777753 1222 3666677777777777777777777776532 23 55666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 003749 374 GGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
.+|.+.|++++|+..|+++...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777777665
No 391
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.10 E-value=3.2e-05 Score=82.99 Aligned_cols=143 Identities=11% Similarity=-0.033 Sum_probs=79.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHH
Q 003749 310 GDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS--------------LVTYSIIVGG 375 (798)
Q Consensus 310 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~l~~~ 375 (798)
+++++|+..|+...+.. ......|..+...|.+.|++++|+..|++.++...... ..+|..+..+
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554443321 11344677777888888888888888888877422111 3555566666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (798)
|.+.|++++|+..|+++++.+.. +..+|..+..+|...|++++|+..|+++++.. +.+..++..+..++...++.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666554322 45555555555555555555555555555542 22334444455555544444443
No 392
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.09 E-value=3.6e-05 Score=67.21 Aligned_cols=94 Identities=16% Similarity=0.007 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHccCChHHHHHHHHHHHHc----
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPT--------L-----HVYTNLIHAYAVGRDMEEALSCVRKMKEE---- 360 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~-----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~---- 360 (798)
.+..+.+.+.+.|++++|+..|++.++.. |+ . ..|+.+..++.+.|++++|+..|++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 44556677778888888888888888763 22 1 15555666666666666666666665553
Q ss_pred ---CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 003749 361 ---GIEMSLVTY----SIIVGGFAKMGNAEAADHWFEEAKE 394 (798)
Q Consensus 361 ---g~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (798)
+. -+...| .....++...|++++|+..|++.++
T Consensus 91 ~e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 21 123344 5555555555555555555555544
No 393
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.08 E-value=3.6e-05 Score=69.23 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003749 681 VFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (798)
Q Consensus 681 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (798)
...|..+..+|.+.|++++|+..++++++.+ +.+...|..++.+|...|++++|+..|++.++.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4566677777777777777777777777655 556667777777777777777777777777763
No 394
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.08 E-value=2.9e-06 Score=91.46 Aligned_cols=121 Identities=17% Similarity=0.052 Sum_probs=73.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003749 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN 381 (798)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 381 (798)
+...|.+.|++++|++.|+++++.. +.+..+|..+..+|.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3344556677777777777777653 3356667777777777777777777777777653 2356667777777777777
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCChHHHHHHHH
Q 003749 382 AEAADHWFEEAKERHATLNAIIYGNIIYA--QCQTRNMERAEALVR 425 (798)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 425 (798)
+++|++.|+++.+.... +...+..+..+ +.+.|++++|+++++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777776665322 33444444444 556666666666655
No 395
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.07 E-value=1.1e-05 Score=68.05 Aligned_cols=86 Identities=21% Similarity=0.160 Sum_probs=58.4
Q ss_pred cCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003749 659 LGDTGKAFEYFTKLRNEGL--ELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAA 736 (798)
Q Consensus 659 ~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 736 (798)
.|++++|+..|+++++.+. .-+...+..+..+|...|++++|+..++++++.. +.+...+..++.+|...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4667777777777776531 1245667777777777777777777777777665 456677777777777788888888
Q ss_pred HHHHHHHHc
Q 003749 737 DLMQQMKQE 745 (798)
Q Consensus 737 ~~~~~m~~~ 745 (798)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 877777664
No 396
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.05 E-value=3.2e-05 Score=80.18 Aligned_cols=139 Identities=12% Similarity=-0.020 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
..|..+.+.|.+.|++++|+..|+++++.- ++. ......+++.+ . -+.+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~~-------~-~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGAK-------L-QPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHGG-------G-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHHH-------H-HHHHHHHHHHHHHHH
Confidence 346778888999999999999999988730 000 00001111111 0 011344566666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 003749 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCL 456 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 456 (798)
.+.|++++|++.++++++.+. .+..++..+..+|...|++++|++.|++..+.. +.+..++..+..++...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665532 245566666666666666666666666666653 234555566666666666655554
Q ss_pred H
Q 003749 457 I 457 (798)
Q Consensus 457 ~ 457 (798)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 397
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.04 E-value=4.9e-05 Score=66.38 Aligned_cols=97 Identities=13% Similarity=0.042 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----
Q 003749 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM------S-----LVTYSIIVGGFAKMGNAEAADHWFEEAKER----- 395 (798)
Q Consensus 332 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 395 (798)
..+......+.+.|++++|+..|++.++..... + ...|+.+..++.+.|++++|+..|++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345566677778888888888888887753220 1 226777777777777777777777777664
Q ss_pred --CCCCChhhH----HHHHHHHHhcCChHHHHHHHHHHHH
Q 003749 396 --HATLNAIIY----GNIIYAQCQTRNMERAEALVRDMEE 429 (798)
Q Consensus 396 --~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 429 (798)
+.. +...| +....++...|++++|+..|++.++
T Consensus 92 e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 322 34455 5566666666666666666666554
No 398
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.04 E-value=0.00017 Score=61.51 Aligned_cols=91 Identities=11% Similarity=0.003 Sum_probs=39.2
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHH
Q 003749 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSL---VTYSIIVGGFAKMGNAEAADHWFEEAKERHATLN---AIIYGNIIYA 410 (798)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~ 410 (798)
+...+.+.|++++|+..|+++++... .+. ..+..++.+|.+.|++++|+..|+++...... + ..++..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 33444444555555555555444321 111 24444444444455555555555444443221 1 2333344444
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 003749 411 QCQTRNMERAEALVRDMEE 429 (798)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~ 429 (798)
|.+.|++++|.+.|+++++
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444443
No 399
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.02 E-value=2.4e-05 Score=70.42 Aligned_cols=98 Identities=12% Similarity=0.058 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHC--------C---------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRAR--------G---------IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKE 359 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 359 (798)
..+..+.+.+.+.|++++|+..|.+.+.. . ...+...|..+..+|.+.|++++|+..+++.++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45677788899999999999999998875 0 011224555666666666666666666666665
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003749 360 EGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 360 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
.+ +.+...|..++.+|...|++++|+..|++....
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 53 224556666666666666666666666666554
No 400
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.01 E-value=4.9e-05 Score=78.72 Aligned_cols=140 Identities=10% Similarity=-0.029 Sum_probs=84.7
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003749 576 SRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHG 655 (798)
Q Consensus 576 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 655 (798)
...+..+...+.+.|++++|+..|+++++... . . ......+++.+ .. ..+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~--~---~-------~~~~~~~~~~~-------~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE--G---S-------RAAAEDADGAK-------LQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--H---H-------HHHSCHHHHGG-------GH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh--c---C-------ccccChHHHHH-------HH-HHHHHHHHHHHHH
Confidence 45566777777788888888888877765200 0 0 00001111111 00 1234566667777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003749 656 YASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEA 735 (798)
Q Consensus 656 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 735 (798)
|.+.|++++|++.++++++.... +...|..+..+|...|++++|+..++++.+.. +.+...+..+..++.+.++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777765433 56667777777777777777777777776654 44566666666666666666555
Q ss_pred HH
Q 003749 736 AD 737 (798)
Q Consensus 736 ~~ 737 (798)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 401
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.01 E-value=1e-05 Score=68.22 Aligned_cols=86 Identities=12% Similarity=0.016 Sum_probs=53.5
Q ss_pred cCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003749 309 RGDMHRARQTFENMRARG--IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAAD 386 (798)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 386 (798)
.|++++|+..|+++++.+ -+.+...+..+..+|.+.|++++|+..|++.++.. +-+..++..+..+|.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466777777777777653 12234456666677777777777777777776653 225666666777777777777777
Q ss_pred HHHHHHHhc
Q 003749 387 HWFEEAKER 395 (798)
Q Consensus 387 ~~~~~~~~~ 395 (798)
..|++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766654
No 402
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.00 E-value=1.6e-05 Score=81.59 Aligned_cols=148 Identities=11% Similarity=-0.036 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
..+..+.+.|.+.|++++|+..|++++.. .|+... +...++++++...+ . ..+|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHH
Confidence 34567788888999999999999998876 333321 22333444443322 1 13677777788
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCHHHH
Q 003749 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDG-YTIIGNEEKC 455 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~g~~~~A 455 (798)
.+.|++++|+..|+++++.+. .+..+|..+..+|...|++++|++.|++.++.. +.+..++..|... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888777643 367777778888888888888888888776653 2344555555555 3345566777
Q ss_pred HHHHHHHHHC
Q 003749 456 LIVFERLKEC 465 (798)
Q Consensus 456 ~~~~~~~~~~ 465 (798)
..+|.+|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7777777654
No 403
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.95 E-value=0.00013 Score=63.23 Aligned_cols=111 Identities=13% Similarity=0.049 Sum_probs=67.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 003749 310 GDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----MGNAEAA 385 (798)
Q Consensus 310 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A 385 (798)
+++++|++.|++..+.| +...+ |...|...+.+++|+++|++..+.| +...+..|..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35666777777766665 22222 5555555566666777776666654 55666666666666 5666666
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 003749 386 DHWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERAEALVRDMEEEG 431 (798)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 431 (798)
+++|++..+.+ +...+..|...|.. .++.++|.+.|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666553 45555556666655 566666666666665554
No 404
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.92 E-value=2.6e-05 Score=79.91 Aligned_cols=148 Identities=11% Similarity=-0.069 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003749 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (798)
Q Consensus 332 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (798)
..+..+...|.+.|++++|+..|++.++.. ++.. .+...|+++++...+. ..+|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 346677888889999999999999988752 3322 1234455555544332 23788899999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHHcCCHHHH
Q 003749 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINL-YTKIGKVSKA 490 (798)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A 490 (798)
.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|++.++.... +...+..|..+ ....+..+++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875 457889999999999999999999999999775322 45566666655 3445678888
Q ss_pred HHHHHHHHHC
Q 003749 491 LEVSKVMKSS 500 (798)
Q Consensus 491 ~~~~~~m~~~ 500 (798)
..+|.+|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8999998765
No 405
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.87 E-value=0.00023 Score=61.73 Aligned_cols=111 Identities=13% Similarity=0.039 Sum_probs=68.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHH
Q 003749 345 RDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERA 420 (798)
Q Consensus 345 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 420 (798)
+++++|+++|++..+.| +.... |...|...+.+++|+++|++..+.+ +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35667777777777665 22223 6666666666666777777766653 55666666666665 5666666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 003749 421 EALVRDMEEEGIDAPIDIYHMMMDGYTI----IGNEEKCLIVFERLKECG 466 (798)
Q Consensus 421 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 466 (798)
.+.|++..+.| +...+..|..+|.. .++.++|+.+|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666654 45555566666655 566666666666665544
No 406
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.80 E-value=7.4e-05 Score=79.83 Aligned_cols=88 Identities=13% Similarity=-0.006 Sum_probs=43.5
Q ss_pred HHHcCChHHHHHHHHHHHHC-----CC-CC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHc-----CC-CC-CHHHHHH
Q 003749 306 YARRGDMHRARQTFENMRAR-----GI-EP-TLHVYTNLIHAYAVGRDMEEALSCVRKMKEE-----GI-EM-SLVTYSI 371 (798)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g~-~~-~~~~~~~ 371 (798)
+...|++++|+.++++.++. |- .| ...+++.|..+|...|++++|+.++++.++. |. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34456666666666555542 10 01 1224555556666666666666655554431 10 11 1234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 003749 372 IVGGFAKMGNAEAADHWFEEAK 393 (798)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~ 393 (798)
|+..|...|++++|+.+|+++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555555543
No 407
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00016 Score=59.65 Aligned_cols=93 Identities=14% Similarity=0.079 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------HH
Q 003749 680 DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD-------VH 752 (798)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-------~~ 752 (798)
+...+..+...+...|++++|...++++.+.. +.+...|..++.+|.+.|++++|++.+++.++. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34566777778888888888888888887765 557778888888888888888888888888764 444 55
Q ss_pred HHHHHHHHHHHcCCccccccccc
Q 003749 753 TYTSFINACSKAGDMQVRFSIPM 775 (798)
Q Consensus 753 ~~~~l~~~~~~~g~~~~a~~~~~ 775 (798)
.+..+..++...|+.++|++...
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 67777888888888888877644
No 408
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.77 E-value=6.4e-05 Score=65.51 Aligned_cols=62 Identities=18% Similarity=0.163 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 698 QSALAVTKEMSAQKIPRNTFVYNILIDGWARR-----------GDVWEAADLMQQMKQEGVQPDVHTYTSFINACS 762 (798)
Q Consensus 698 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~ 762 (798)
++|+..|++.++.+ +.+...|..++.+|... |++++|++.|++.++ +.|+...|...+..+.
T Consensus 63 ~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 63 QEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 46666666666554 44555666666666554 367777777777766 4566555555544433
No 409
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.74 E-value=0.0002 Score=76.59 Aligned_cols=124 Identities=10% Similarity=-0.111 Sum_probs=59.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcC-------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----C--CCCChhhHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERH-------ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE-----G--IDAPIDIYHM 441 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~--~~~~~~~~~~ 441 (798)
+..+|++++|+.++++.+... ......+++.|+.+|...|++++|+.++++.++. | .+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 334555555555555544321 0011234445555555555555555555444331 1 0111334555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CC-CcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 442 MMDGYTIIGNEEKCLIVFERLKEC-----GF-SPS-IISYGCLINLYTKIGKVSKALEVSKVMKS 499 (798)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (798)
|...|...|++++|+.+|++.++. |. .|+ ..+.+.+..++...+.+++|..+|.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666655555432 21 122 22334445555566666666666666654
No 410
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.71 E-value=0.00015 Score=60.48 Aligned_cols=81 Identities=7% Similarity=-0.090 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
+.|+..|++++..+|. +...+..+...|...|++++|+..|+++++.. ..+...|..+..+|..
T Consensus 2 ~~a~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 65 (115)
T 2kat_A 2 QAITERLEAMLAQGTD---------------NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQG 65 (115)
T ss_dssp CCHHHHHHHHHTTTCC---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC---------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHH
Confidence 3567777888777776 55667777888888888888888888888764 3456677778888888
Q ss_pred cCChHHHHHHHHHHHHc
Q 003749 344 GRDMEEALSCVRKMKEE 360 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~ 360 (798)
.|++++|+..|++.++.
T Consensus 66 ~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 66 QGDRAGARQAWESGLAA 82 (115)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888877653
No 411
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.69 E-value=0.00015 Score=63.21 Aligned_cols=92 Identities=12% Similarity=0.049 Sum_probs=68.0
Q ss_pred hhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCCh----------HHHHHHHHHHHHCCCCCC
Q 003749 261 KEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDM----------HRARQTFENMRARGIEPT 330 (798)
Q Consensus 261 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~~~~~~~~~~ 330 (798)
..+++|++.|+++++.+|. +...|..+..++.+.|++ ++|+..|++.++.+ +.+
T Consensus 16 ~~feeA~~~~~~Ai~l~P~---------------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~ 79 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL---------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKK 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTC
T ss_pred hHHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCc
Confidence 4559999999999999998 667777788888877765 48888888888774 346
Q ss_pred HHHHHHHHHHHHccC-----------ChHHHHHHHHHHHHcCCCCCHHHHH
Q 003749 331 LHVYTNLIHAYAVGR-----------DMEEALSCVRKMKEEGIEMSLVTYS 370 (798)
Q Consensus 331 ~~~~~~ll~~~~~~g-----------~~~~A~~~~~~m~~~g~~~~~~~~~ 370 (798)
..+|..+..+|...| ++++|++.|++.++. .|+...|.
T Consensus 80 ~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~ 128 (158)
T 1zu2_A 80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL 128 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHH
Confidence 667777888887664 677777777777774 34444443
No 412
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.67 E-value=0.00013 Score=56.98 Aligned_cols=73 Identities=11% Similarity=0.158 Sum_probs=62.6
Q ss_pred cceeecCCCccC-ch----HHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 152 GKIFVGNLPNWI-KK----HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 152 ~~~~v~nl~~~~-~~----~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
++|+|.||+.++ +. +.++.+|..|+++......+. -.-..|.|.++++|.+|...| ++..++|+.+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-------FRRirv~F~~~~~A~~AR~~L--h~~~f~g~~~ 76 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-------FKRVRINFSNPLSAADARLRL--HKTEFLGKEM 76 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-------TTEEEEECSSTTHHHHHHHTS--TTSEETTEEC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-------ceEEEEEeCChHHHHHHHHHh--ccceecCcee
Confidence 489999998876 33 356899999999999888876 335789999999999999988 9999999999
Q ss_pred eeecccc
Q 003749 227 TVKLDDG 233 (798)
Q Consensus 227 ~v~~~~~ 233 (798)
+|-++.+
T Consensus 77 r~YFgq~ 83 (104)
T 1wey_A 77 KLYFAQT 83 (104)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9998863
No 413
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.60 E-value=5.3e-05 Score=62.73 Aligned_cols=92 Identities=12% Similarity=-0.004 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC------HHHH
Q 003749 646 EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRN------TFVY 719 (798)
Q Consensus 646 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~ 719 (798)
...|..+...+...|++++|++.|+++++.... +...+..+..+|.+.|++++|+..++++++.. +.+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 345556666666677777777777766665433 56666666777777777777777777766644 222 4445
Q ss_pred HHHHHHHHHcCCHHHHHHHH
Q 003749 720 NILIDGWARRGDVWEAADLM 739 (798)
Q Consensus 720 ~~l~~~~~~~g~~~~A~~~~ 739 (798)
..+..++...|+.++|++.+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 55555555555544444433
No 414
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.56 E-value=0.0004 Score=57.91 Aligned_cols=78 Identities=14% Similarity=0.131 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 665 AFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 665 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
|++.|+++++.... +...+..+..+|...|++++|+..++++.+.+ +.+...|..+..+|...|++++|+..|++..+
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444443322 44455555555555555555555555555433 33444555555555555555555555555443
No 415
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.53 E-value=0.0009 Score=52.64 Aligned_cols=60 Identities=20% Similarity=0.277 Sum_probs=24.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003749 649 YTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA 709 (798)
Q Consensus 649 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (798)
+..+...+...|++++|+..|+++++.... +...+..+..+|.+.|++++|...+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 333333444444444444444444433221 333334444444444444444444444433
No 416
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.51 E-value=0.00093 Score=52.53 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003749 369 YSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (798)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 429 (798)
+..+...+.+.|++++|+..|++...... .+..++..+..+|.+.|++++|.+.|++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33344444444444444444444433321 1233333344444444444444444444433
No 417
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.48 E-value=0.23 Score=56.28 Aligned_cols=276 Identities=13% Similarity=0.071 Sum_probs=148.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHH
Q 003749 481 YTKIGKVSKALEVSKVMKSSGIKHNM--KTYSMLINGFLKLKDWANVFAVFEDVMRDGL-------KPDVVLYNNIIRAF 551 (798)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-------~~~~~~~~~li~~~ 551 (798)
....|+.++++.++......+-..+. ..-..+.-+....|..+++..++...+...- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 34456667777666655432101222 2333344455566666677777776655311 01122223333344
Q ss_pred HcCCC-hHHHHHHHHHHHHCCCCCCcccHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003749 552 CGMGN-MDRAIHIVKEMQKERHRPTSRTFM--PIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQME 628 (798)
Q Consensus 552 ~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 628 (798)
+-.|. -+++...+..+...... ...... +|...|.-.|+-+....++..+.+.. .-+..-+.++.-++...|+.+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChH
Confidence 44443 34666666666654211 111112 23333556678888888887776532 112222233333455778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 003749 629 KAIEILDEMTLAGISPNEHTYT---TIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTK 705 (798)
Q Consensus 629 ~A~~~~~~m~~~~~~p~~~t~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 705 (798)
.+..+++.+.... .|. .-|. .+..+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.++++
T Consensus 542 ~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 542 LADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 8888888877642 222 2232 34456778888777777888888642 2233333333334455677677777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003749 706 EMSAQKIPRNTFVYNILIDGWARRGDV-WEAADLMQQMKQEGVQPDVHTYTSFINACSKAG 765 (798)
Q Consensus 706 ~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g 765 (798)
.+.+.+ .+.+..-..+.-+....|.. .+++.++..+.. .+|..+-..-+-++...|
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHS
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHh
Confidence 666543 33333333444444444443 678888888874 456665555555665555
No 418
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.24 E-value=0.0013 Score=53.13 Aligned_cols=62 Identities=26% Similarity=0.171 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003749 681 VFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMK 743 (798)
Q Consensus 681 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (798)
...+..+..+|.+.|++++|+..|+++++.+ +.+...|..+..+|...|++++|++.+++.+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444444444444433 2333444444444444555555554444443
No 419
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.15 E-value=0.0021 Score=51.82 Aligned_cols=62 Identities=18% Similarity=-0.010 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003749 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDME 428 (798)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 428 (798)
...|..+..+|.+.|++++|+..|+++++.+.. +..+|..+..+|.+.|++++|.+.|++.+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444444444444443222 33344444444444444444444444433
No 420
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.08 E-value=0.017 Score=67.07 Aligned_cols=169 Identities=15% Similarity=0.125 Sum_probs=96.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003749 545 NNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEK 624 (798)
Q Consensus 545 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 624 (798)
..++..+.+.|..++|+++.++-. .-.......|+++.|+++.+.+ .+...|..|...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 566666777777777776553211 1133455678888887775432 3677888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003749 625 RQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVT 704 (798)
Q Consensus 625 ~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 704 (798)
++++.|++.|.++.+ |..+...|...|+.+...++-+.+...|. ++....+|.+.|++++|.+++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 888888888876642 44445555556666665555544444431 133344455566666665555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCccccccc
Q 003749 705 KEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDV----HTYTSFINACSKAGDMQVRFSI 773 (798)
Q Consensus 705 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~~~~~l~~~~~~~g~~~~a~~~ 773 (798)
.+.+++++|..+-+.. .|.. .+.......+...|+.+.|..+
T Consensus 760 ----------------------~~~~~~~~A~~lA~~~-----~~~~~~i~~~~~~~~~~L~~~~~~~~a~~l 805 (814)
T 3mkq_A 760 ----------------------IKSQRFSEAAFLGSTY-----GLGDNEVNDIVTKWKENLILNGKNTVSERV 805 (814)
T ss_dssp ----------------------HHTTCHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHHHTTTCHHHHTTB
T ss_pred ----------------------HHcCChHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHhccchhHHHhh
Confidence 3445666666655442 2333 3333344455556654444444
No 421
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.00 E-value=0.063 Score=51.53 Aligned_cols=94 Identities=14% Similarity=0.048 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CCHHH
Q 003749 382 AEAADHWFEEAKERHATL-NAIIYGNIIYAQCQT-----RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII-GNEEK 454 (798)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 454 (798)
...|..+++++++.+... +...|..+...|.+. |+.++|.+.|++.++.+..-+..++....+.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 567778888888774432 355788888888884 88889999998888876434577788888888774 88888
Q ss_pred HHHHHHHHHHCCCC--cCHHHHH
Q 003749 455 CLIVFERLKECGFS--PSIISYG 475 (798)
Q Consensus 455 A~~~~~~~~~~~~~--~~~~~~~ 475 (798)
+.+.+++.+..... |+....+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHH
Confidence 88888888887655 5544443
No 422
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.90 E-value=0.0041 Score=48.35 Aligned_cols=70 Identities=20% Similarity=0.324 Sum_probs=57.9
Q ss_pred ccceeecCCCccCchHHHHHHhcc-----cCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQ-----FGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~-----~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~ 225 (798)
..+|.|.|||+.++++.|+-.|++ -|+|.++.... +-|+|+|.+.+.|++.++. ..+.|+|..
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---------~~AvItF~d~~va~rVL~k---~~H~L~~~~ 75 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---------CGGVLTFREPADAERVLAQ---ADHELHGAQ 75 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---------TEEEEEESSHHHHHHHHTC---SCCBSSSSB
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---------CcEEEEEcChHHHHHHhcC---CcceecCeE
Confidence 358999999999999999999965 37888887742 5789999999999999873 388999999
Q ss_pred eeeeccc
Q 003749 226 LTVKLDD 232 (798)
Q Consensus 226 ~~v~~~~ 232 (798)
|.|.-..
T Consensus 76 LsV~P~~ 82 (104)
T 2dhx_A 76 LSLRPAP 82 (104)
T ss_dssp CEEEECC
T ss_pred EEEEcCC
Confidence 9886543
No 423
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.73 E-value=0.0036 Score=47.92 Aligned_cols=53 Identities=23% Similarity=0.352 Sum_probs=44.6
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (798)
+.++| +.|.++.-.||.++|+.||.| .|+.+.| --|||.|.+++.|..|+..+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD--------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET--------TEEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC--------CeEEEEecCHHHHHHHHHhc
Confidence 35555 999999999999999999954 4666655 47999999999999999866
No 424
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.11 Score=45.79 Aligned_cols=104 Identities=11% Similarity=0.151 Sum_probs=68.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 003749 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN 416 (798)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 416 (798)
-.....+.|+++.|+++.+++ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|.-.|+
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence 344556678888888877665 2667788888888888888888888876642 3344455666777
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003749 417 MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFER 461 (798)
Q Consensus 417 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (798)
.++..++-+.....|- ++.....+...|+++++.++|.+
T Consensus 76 ~e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 7766666555555441 44555566667777777777654
No 425
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.67 E-value=0.21 Score=41.10 Aligned_cols=149 Identities=14% Similarity=0.151 Sum_probs=106.7
Q ss_pred cHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003749 578 TFMPIIHG--FARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHG 655 (798)
Q Consensus 578 ~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 655 (798)
+...|+.+ +.-.|..++..++..+.... .+..-||-+|.-....-+-+-..++++..-.. -|
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD---------- 70 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD---------- 70 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------
Confidence 33444444 34568888899988888764 36777777777776666666666666655432 11
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003749 656 YASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEA 735 (798)
Q Consensus 656 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 735 (798)
....|++......+-.+- -+...++..++.+...|+.+.-.+++..+... .+++....--+..+|.+.|+..+|
T Consensus 71 is~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a 144 (172)
T 1wy6_A 71 LDKCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDA 144 (172)
T ss_dssp GGGCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred cHhhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhH
Confidence 124455666665554442 24556677888899999999999999987543 368899999999999999999999
Q ss_pred HHHHHHHHHcCCC
Q 003749 736 ADLMQQMKQEGVQ 748 (798)
Q Consensus 736 ~~~~~~m~~~g~~ 748 (798)
.+++.+..+.|++
T Consensus 145 ~eLl~~AC~kG~k 157 (172)
T 1wy6_A 145 TTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhH
Confidence 9999999999875
No 426
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.66 E-value=0.014 Score=58.47 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
+..+|..+...+...|++++|+..+++++..+ ++...|..+...+.-.|++++|.+.|+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44444444444444555555555555555543 44445555555555555555555555555554
No 427
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.65 E-value=0.054 Score=62.76 Aligned_cols=75 Identities=16% Similarity=0.058 Sum_probs=35.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003749 335 TNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT 414 (798)
Q Consensus 335 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (798)
..++..+.+.|.+++|+++.+... .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 555555555555555555432110 1122334455555555543322 1344555555555555
Q ss_pred CChHHHHHHHHHH
Q 003749 415 RNMERAEALVRDM 427 (798)
Q Consensus 415 g~~~~A~~~~~~m 427 (798)
++++.|+++|.++
T Consensus 695 ~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 695 FNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 5555555555544
No 428
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.65 E-value=0.0043 Score=49.64 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=33.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHc
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIEPTLH-VYTNLIHAYAVGRDMEEALSCVRKMKEE 360 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 360 (798)
...+.+.|++++|+..|+++.+.. ..+.. .+..+..+|...|++++|+..|++.++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 445556666666666666666553 22444 5556666666666666666666666654
No 429
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.62 E-value=0.0039 Score=65.32 Aligned_cols=86 Identities=13% Similarity=-0.014 Sum_probs=49.1
Q ss_pred ccCChHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C--CCCChhhHHHHH
Q 003749 343 VGRDMEEALSCVRKMKEE-----GI-EM-SLVTYSIIVGGFAKMGNAEAADHWFEEAKER-----H--ATLNAIIYGNII 408 (798)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~-----g~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~ 408 (798)
+.|++++|+.++++.++. |. .| -..+++.|+.+|..+|++++|+.++++++.. | .+....+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346777777777776542 11 11 2356777777777777777777777776542 1 111233455555
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 003749 409 YAQCQTRNMERAEALVRDME 428 (798)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~ 428 (798)
.+|..+|++++|+.++++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 55555555555555555444
No 430
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.60 E-value=0.048 Score=54.68 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003749 679 LDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTY 754 (798)
Q Consensus 679 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 754 (798)
.+..+|..+..++...|++++|...++++...+ ++...|..+.+.+...|+.++|.+.+++... +.|...||
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 355666666555555666666666666666654 5555566666666666666666666666665 34555443
No 431
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.58 E-value=0.005 Score=49.27 Aligned_cols=54 Identities=19% Similarity=0.116 Sum_probs=24.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003749 655 GYASLGDTGKAFEYFTKLRNEGLELDVF-TYEALLKACCKSGRMQSALAVTKEMSA 709 (798)
Q Consensus 655 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (798)
.+...|++++|++.|+++++.... +.. .+..+..+|...|++++|...|+++.+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444444444444444443321 333 444444444444444444444444444
No 432
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.54 E-value=0.0044 Score=64.92 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=69.5
Q ss_pred HcCChHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHHc-----CC-CCC-HHHHHHHH
Q 003749 308 RRGDMHRARQTFENMRAR---GIEP----TLHVYTNLIHAYAVGRDMEEALSCVRKMKEE-----GI-EMS-LVTYSIIV 373 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~---~~~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~-~~~~~~l~ 373 (798)
..|++++|+.++++.++. -+.+ ...+++.|..+|...|++++|+.++++.++. |. .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 468899999999998873 1112 2347899999999999999999999998752 31 223 45699999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 003749 374 GGFAKMGNAEAADHWFEEAKE 394 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~ 394 (798)
..|..+|++++|+.+|+++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998865
No 433
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.52 E-value=0.0087 Score=62.81 Aligned_cols=91 Identities=13% Similarity=-0.052 Sum_probs=52.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHHc-----C-CCC-CHHH
Q 003749 303 VNYYARRGDMHRARQTFENMRARG---IEP----TLHVYTNLIHAYAVGRDMEEALSCVRKMKEE-----G-IEM-SLVT 368 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g-~~~-~~~~ 368 (798)
+..+.+.|++++|+.+++++.+.. +.+ ...+++.|..+|...|++++|+.+++++++. | ..| -..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556677777777777776531 111 1235666667777777777777777666531 1 111 1334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 369 YSIIVGGFAKMGNAEAADHWFEEAK 393 (798)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (798)
++.|...|...|++++|+.+|+++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6666666666666666666666554
No 434
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.43 E-value=2.8e-06 Score=86.03 Aligned_cols=175 Identities=13% Similarity=0.083 Sum_probs=103.1
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
|+..|..+|.+..+.|.+++-+..+...++..- +..+=+.|+-+|++.+++.+-.+++ -.+|..-...+++
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHH
Confidence 556778888898899999988888888777633 3444468899999988877544432 1245555667777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC--------------------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003749 375 GFAKMGNAEAADHWFEEAKERH--------------------ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA 434 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 434 (798)
-|...|.++.|.-+|..+.... -..+..+|..+..+|...+.|.-|.-.--.++-..
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvha--- 229 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA--- 229 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccH---
Confidence 7888888888877776542110 01244555555555666665555544433333211
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc
Q 003749 435 PIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKI 484 (798)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 484 (798)
+-...|+..|...|.+++-+.+++.-+.. -+.....|+-|.-.|++-
T Consensus 230 --deL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 230 --DELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp --SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 11223445555566666655555554421 122445555555555544
No 435
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.35 E-value=0.013 Score=61.62 Aligned_cols=90 Identities=10% Similarity=0.005 Sum_probs=57.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcC---CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhC-----C--CCCCHHHHH
Q 003749 655 GYASLGDTGKAFEYFTKLRNEG---LELD----VFTYEALLKACCKSGRMQSALAVTKEMSAQ-----K--IPRNTFVYN 720 (798)
Q Consensus 655 ~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~ 720 (798)
.+.+.|++++|+++++++++.. +.++ ..+++.|+.+|...|++++|+.+++++++. | .+.-..+|+
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445667777777777776431 1111 345677777777777777777777766531 2 111234677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 721 ILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 721 ~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
.|...|...|++++|+.++++..+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 888888888888888888877654
No 436
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.29 E-value=3.8e-07 Score=92.24 Aligned_cols=117 Identities=9% Similarity=0.129 Sum_probs=85.0
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
+..|+.|..++.+.|...+|++.|=+. .|...|..+|....+.|.+++-+..+...++. .-+...=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 346788889988888888887655332 26667888999999999999988888666554 2355666788999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDM 427 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 427 (798)
|++.++..+-.+++. .+|..-...+..-|...|.++.|.-+|..+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 999998776544432 356666677777788888888777766544
No 437
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.27 Score=43.35 Aligned_cols=100 Identities=11% Similarity=0.187 Sum_probs=52.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 003749 411 QCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKA 490 (798)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 490 (798)
..+.|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|.+..+ +..+.-.|.-.|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34556666666655544 1345566666666666666666666665432 33444445555665555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003749 491 LEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFED 531 (798)
Q Consensus 491 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 531 (798)
..+-+.....|- ++.....+...|+++++.++|.+
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 544444444331 23333344455666666666543
No 438
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.21 E-value=0.41 Score=39.40 Aligned_cols=141 Identities=11% Similarity=0.084 Sum_probs=77.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003749 306 YARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAA 385 (798)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A 385 (798)
+...|..+++.++..+..... +..-||.+|-.....-+-+-..++++.+-+. .|. ...|++...
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHH
Confidence 445677777777777766642 5555666665555555555555555444331 121 233444444
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003749 386 DHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465 (798)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (798)
.+.|-.+-. +...+...+..+..+|+.++-.+++.++... ..++......+..+|.+.|+..+|.+++.+.-+.
T Consensus 81 i~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 444443321 3334444556666667777766666665332 2455566666666666666666666666666666
Q ss_pred CCC
Q 003749 466 GFS 468 (798)
Q Consensus 466 ~~~ 468 (798)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 543
No 439
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.17 E-value=0.0064 Score=46.73 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=44.6
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (798)
+.++| +.|.++.-.||.++|+.||. ..|+.+-| --|||.|.+++.|..|+..+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD--------TsAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD--------TSAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET--------TEEEEEEEEECHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC--------CeEEEEecCHHHHHHHHHhc
Confidence 34556 99999999999999999994 45666655 47999999999999999876
No 440
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.11 E-value=0.024 Score=43.70 Aligned_cols=70 Identities=11% Similarity=0.168 Sum_probs=57.1
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCC-cceEEEEeCChhHHHHHHHhcccCCeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKN-VGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g 223 (798)
++|-|.+||+..|++++.+.++..+.+.....+.++...+.+ -+-|+|.|.+.+++..-.+.+ +|+.+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~--~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRF--DGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHH--TTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHh--CCcEEEc
Confidence 478999999999999999999999888777777662222222 468999999999999999988 9988754
No 441
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.08 E-value=0.096 Score=50.27 Aligned_cols=92 Identities=12% Similarity=0.049 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-CCh
Q 003749 347 MEEALSCVRKMKEEGIEMS---LVTYSIIVGGFAKM-----GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT-RNM 417 (798)
Q Consensus 347 ~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 417 (798)
...|..++++.++. .|+ -..|..++..|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 35677777777775 344 45788888888884 88888888888888876544577777778888774 888
Q ss_pred HHHHHHHHHHHHcCCC--CChhhHH
Q 003749 418 ERAEALVRDMEEEGID--APIDIYH 440 (798)
Q Consensus 418 ~~A~~~~~~m~~~~~~--~~~~~~~ 440 (798)
+++.+.+++.+..... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888888886544 4443333
No 442
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.92 E-value=0.049 Score=42.79 Aligned_cols=64 Identities=9% Similarity=-0.009 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 680 DVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 680 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
|...+..+..++...++ .++|..++++.++.+ +.+...+..++..+.+.|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444455555443333 455555555555544 44555555555555556666666666665554
No 443
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.79 E-value=0.074 Score=45.68 Aligned_cols=86 Identities=14% Similarity=0.071 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 003749 662 TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG---RMQSALAVTKEMSAQKIPR--NTFVYNILIDGWARRGDVWEAA 736 (798)
Q Consensus 662 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 736 (798)
...+.+.|.+..+.+. ++..+.-.+.+++++.+ ++++++.++++..+.+ .| +...+-.|.-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555555554 46666666777777766 5557777777776643 12 2445556666777788888888
Q ss_pred HHHHHHHHcCCCCCH
Q 003749 737 DLMQQMKQEGVQPDV 751 (798)
Q Consensus 737 ~~~~~m~~~g~~pd~ 751 (798)
++++.+++ +.|+.
T Consensus 92 ~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHh--cCCCC
Confidence 88888776 46653
No 444
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.75 E-value=3.7 Score=46.61 Aligned_cols=311 Identities=12% Similarity=0.047 Sum_probs=166.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--C-----CCHHHHHHHHHH
Q 003749 445 GYTIIGNEEKCLIVFERLKECGFSPSII--SYGCLINLYTKIGKVSKALEVSKVMKSSGI--K-----HNMKTYSMLING 515 (798)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~-----~~~~~~~~ll~~ 515 (798)
+....|+.++++.++++.+..+-..+.. .-..+.-+....|..++++.++.......- . +....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556778888888777765421011222 222333445556666678887777664321 0 112222333333
Q ss_pred HHhcCC-HHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHH--HHHHHHHh
Q 003749 516 FLKLKD-WANVFAVFEDVMRDGLKPDVV----LYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFM--PIIHGFAR 588 (798)
Q Consensus 516 ~~~~~~-~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~ 588 (798)
++-.|. -+++...+..++... +.. .-..|...+...|+-+-...++..+.+.. +..... .+.-++.-
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 333333 245666666666531 222 12234445567788777777877776542 222332 33334456
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003749 589 AGEMKRALEIFDMMRRSGCIPTVHTFN---ALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKA 665 (798)
Q Consensus 589 ~~~~~~a~~~~~~~~~~~~~p~~~~~~---~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A 665 (798)
.|+.+.+..+.+.+... ..| ..-|. ++..+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+
T Consensus 537 ~g~~e~~~~li~~L~~~-~dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 537 YGRQELADDLITKMLAS-DES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTCGGGGHHHHHHHHHC-SCH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSH
T ss_pred CCChHHHHHHHHHHHhC-CCH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHH
Confidence 78888888888887763 112 22232 33456778889877777998887642 23334344444455567777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cC-------CHHHH
Q 003749 666 FEYFTKLRNEGLELDVFTYEALLKACCKSGR-MQSALAVTKEMSAQKIPRNTFVYNILIDGWAR--RG-------DVWEA 735 (798)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g-------~~~~A 735 (798)
.++++.+.+.+ .+....-..+.-+....|+ ..++..++..+... .|..+-..-+.++.. .| ++...
T Consensus 614 ~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~ 689 (963)
T 4ady_A 614 PRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVADI 689 (963)
T ss_dssp HHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHHH
Confidence 77777666543 3444433344444444554 36788888888753 344443333333333 22 34444
Q ss_pred HHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCcc
Q 003749 736 ADLMQQMKQE-GVQPDVHTYTSFINACSKAGDMQ 768 (798)
Q Consensus 736 ~~~~~~m~~~-g~~pd~~~~~~l~~~~~~~g~~~ 768 (798)
++.+...... .-.++...-..+..+....|.--
T Consensus 690 l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n 723 (963)
T 4ady_A 690 NKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRN 723 (963)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGT
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCc
Confidence 5544444432 22233445556667777777533
No 445
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.68 E-value=0.036 Score=44.79 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=54.4
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc-eeeeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG-RVLTVK 229 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g-~~~~v~ 229 (798)
.+-|-|-+.++.. -+.+.+.|++||.|.+...... ...-.|.|.+..+|++|+.. ||..|+| -.|-|.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~-------~NWihI~Y~s~~~A~rAL~k---NG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT-------GNWMHIRYQSKLQARKALSK---DGRIFGESIMIGVK 92 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS-------SSEEEEEESSHHHHHHHHTT---TTCEETTTEECEEE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC-------CCeEEEEeCCHHHHHHHHHh---CCeEecCCEEEEEE
Confidence 3467777888774 5667889999999998876322 56999999999999999965 8999985 445665
Q ss_pred cc
Q 003749 230 LD 231 (798)
Q Consensus 230 ~~ 231 (798)
..
T Consensus 93 p~ 94 (119)
T 1wwh_A 93 PC 94 (119)
T ss_dssp EC
T ss_pred EC
Confidence 53
No 446
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.66 E-value=0.09 Score=42.33 Aligned_cols=63 Identities=8% Similarity=-0.089 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003749 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEG------IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKE 394 (798)
Q Consensus 332 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (798)
..+..|...+.+.|++..|...|++..+.- -.....++..|..+|.+.|++++|+..++++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334444444444455555555444443320 011233344444444444444444444444443
No 447
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.65 E-value=0.086 Score=45.26 Aligned_cols=83 Identities=10% Similarity=0.130 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 003749 312 MHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR---DMEEALSCVRKMKEEGIE-MSLVTYSIIVGGFAKMGNAEAADH 387 (798)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~A~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~g~~~~A~~ 387 (798)
...+++.|++..+.+ .++..+...+..++++.+ ++++++.+|+++.+.+.+ -+...+..|.-+|.+.|++++|++
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 334444444444443 244455555555555544 344555555555544200 123334444444455555555555
Q ss_pred HHHHHHhc
Q 003749 388 WFEEAKER 395 (798)
Q Consensus 388 ~~~~~~~~ 395 (798)
.++.+++.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 55555544
No 448
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.65 E-value=3.6 Score=45.77 Aligned_cols=127 Identities=12% Similarity=0.145 Sum_probs=81.0
Q ss_pred hHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcC-CHHHHHHHHHHHHHC------CCC-cCH
Q 003749 403 IYGNIIYAQCQTRN-MERAEALVRDMEEEGIDAPIDIY--HMMMDGYTIIG-NEEKCLIVFERLKEC------GFS-PSI 471 (798)
Q Consensus 403 ~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~g-~~~~A~~~~~~~~~~------~~~-~~~ 471 (798)
....++..+...++ .+.|..+|+++.... |...++ ..++..+...+ +--+|..++.+.++. ... .+.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 44556666666666 588999999998874 333332 23333333333 344566666665431 111 111
Q ss_pred H----------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 472 I----------SYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDV 532 (798)
Q Consensus 472 ~----------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 532 (798)
. ....=.+.+...|+++-|+.+-++....- +.+-.+|..|..+|.+.|+++.|+-.+..+
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1 11111355677899999999999988762 445779999999999999999999888776
No 449
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.51 E-value=0.12 Score=40.47 Aligned_cols=67 Identities=9% Similarity=-0.073 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003749 644 PNEHTYTTIMHGYASLGD---TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (798)
Q Consensus 644 p~~~t~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (798)
.+...+..+..++...++ .++|..+|+++++.... +......+...+.+.|++++|..+|+++.+.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 345555555655544433 57777777777776544 66666777777777777777777777777654
No 450
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.51 E-value=0.12 Score=41.54 Aligned_cols=64 Identities=14% Similarity=0.022 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEG------LELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ 710 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (798)
..+..|...+.+.|+++.|...|+.+++.- -.....++..|..+|.+.|+++.|..+++++.+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 334445555555555555555555554321 0123445555555566666666666666555543
No 451
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.26 E-value=0.019 Score=59.35 Aligned_cols=56 Identities=18% Similarity=0.331 Sum_probs=42.8
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHh
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 213 (798)
.++|||. .+..+++.+|.+.|++||.|.++..-.+ + .-|+.|||.+.+++.+++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-F-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-S-----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-C-----CeEEEEEeCCHHHHHHHHhc
Confidence 3589997 7999999999999999999999988876 1 25999999999999988754
No 452
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.98 E-value=0.42 Score=40.38 Aligned_cols=55 Identities=11% Similarity=-0.023 Sum_probs=34.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003749 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFS 468 (798)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 468 (798)
..++.++|.++|+.+++..-. -..+|....+.-.+.|+...|.+++.+....+.+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 336677777777777654222 2556666666666777777777777777666544
No 453
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.76 E-value=5.4 Score=41.70 Aligned_cols=188 Identities=7% Similarity=0.108 Sum_probs=86.1
Q ss_pred CChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhcC
Q 003749 310 GDMHRARQTFENMRAR-----GIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF----AKMG 380 (798)
Q Consensus 310 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~----~~~g 380 (798)
|++++|++.+-.+.+. +...+......++..|.+.|+++...+.+..+.+..... -..-..++..+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 5566676666554432 223344556777777888888877777666555432111 11112222211 1112
Q ss_pred CHHH--HHHHHHHHHhc--C-CCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C----hhhHHHHHHHHH
Q 003749 381 NAEA--ADHWFEEAKER--H-ATL---NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA-P----IDIYHMMMDGYT 447 (798)
Q Consensus 381 ~~~~--A~~~~~~~~~~--~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~-~----~~~~~~l~~~~~ 447 (798)
..+. -+.+.+..... | ... .......|...|...|++.+|.+++.++...-... + ...+...+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 1111 11111110000 0 000 01122345566666666666666666654321111 1 234555556666
Q ss_pred hcCCHHHHHHHHHHHHH----CCCCcC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003749 448 IIGNEEKCLIVFERLKE----CGFSPS--IISYGCLINLYTKIGKVSKALEVSKVMK 498 (798)
Q Consensus 448 ~~g~~~~A~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (798)
..+++..|..++.++.. ....++ ...+..++..+...+++.+|.+.|.++.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 66666666666665432 111111 2334445555555666666655555443
No 454
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.67 E-value=0.073 Score=43.62 Aligned_cols=79 Identities=23% Similarity=0.332 Sum_probs=53.2
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceE-EEEecCC-----------CCCC-CCcceEEEEeCChhHHHHHHHhcccCCe
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKN-VILIKGY-----------NNFE-KNVGFGFVIYDGPAAEKSAMKAVEFDGV 219 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~~-----------~~~~-~~~g~~fv~f~~~~~a~~a~~~~~~~~~ 219 (798)
.|.|=+.|++ ....+-+.|++||.|.+ +.+.++. +..+ ...+.-.|.|+++.+|.+|+.. ||.
T Consensus 9 ~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~---NG~ 84 (132)
T 3p3d_A 9 AILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE---NGA 84 (132)
T ss_dssp EEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT---TTC
T ss_pred EEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh---CCe
Confidence 4455566655 44567778999999975 3222110 0000 0145779999999999999965 999
Q ss_pred eecceeeeeecccccc
Q 003749 220 EFHGRVLTVKLDDGRR 235 (798)
Q Consensus 220 ~~~g~~~~v~~~~~~~ 235 (798)
.|+|..|-|...+...
T Consensus 85 ii~G~mIGV~Py~~~~ 100 (132)
T 3p3d_A 85 VFNGVLLGVIPYTKDA 100 (132)
T ss_dssp EETTEECEEEECCHHH
T ss_pred EeCcEEEEEEECCHHH
Confidence 9999988887765443
No 455
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.32 E-value=6.2 Score=41.27 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHC-----CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 450 GNEEKCLIVFERLKEC-----GFSPSIISYGCLINLYTKIGKVSKALEVSKVMKS 499 (798)
Q Consensus 450 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (798)
|+++.|++.+..+.+. +..........++..|...|+++...+.+..+..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5677777766555432 2233455666777778888888777766655544
No 456
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.05 E-value=0.86 Score=38.54 Aligned_cols=54 Identities=15% Similarity=0.242 Sum_probs=35.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003749 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID 433 (798)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 433 (798)
.++.++|.++|+.++..+-. -..+|.....--.++|++..|.+++.+.+..+..
T Consensus 73 i~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hcCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 36777777777777655222 2556666666666777777777777777776533
No 457
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.94 E-value=0.42 Score=39.34 Aligned_cols=83 Identities=10% Similarity=0.099 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH---HHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 003749 312 MHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEE---ALSCVRKMKEEGIE-MSLVTYSIIVGGFAKMGNAEAADH 387 (798)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~---A~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~g~~~~A~~ 387 (798)
...+.+.|......| .++..+-..+..++++..+..+ ++.+++++.+.+.+ -.-.....|.-++.+.|++++|++
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344445555544444 2566666666666666655544 66666666654311 123344455556666666666666
Q ss_pred HHHHHHhc
Q 003749 388 WFEEAKER 395 (798)
Q Consensus 388 ~~~~~~~~ 395 (798)
.++.+++.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666655
No 458
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.86 E-value=1.1 Score=36.88 Aligned_cols=86 Identities=13% Similarity=0.032 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHH
Q 003749 662 TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQS---ALAVTKEMSAQKIP-RNTFVYNILIDGWARRGDVWEAAD 737 (798)
Q Consensus 662 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 737 (798)
+..+.+.|.+....|. ++..+--.+.+++.+..+..+ ++.+++++...+-+ ......-.|.-++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4444555555544443 455555566666666665443 66666666654311 122344456666777777777777
Q ss_pred HHHHHHHcCCCCC
Q 003749 738 LMQQMKQEGVQPD 750 (798)
Q Consensus 738 ~~~~m~~~g~~pd 750 (798)
+++.+++ +.|+
T Consensus 96 ~~~~lL~--~eP~ 106 (126)
T 1nzn_A 96 YVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHH--HCTT
T ss_pred HHHHHHH--hCCC
Confidence 7777776 3554
No 459
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.76 E-value=7.8 Score=37.84 Aligned_cols=25 Identities=8% Similarity=-0.059 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHH
Q 003749 680 DVFTYEALLKACCKSGRMQSALAVT 704 (798)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~ 704 (798)
+......+...|.+.|++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4555555555555555555555544
No 460
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=92.67 E-value=0.071 Score=46.99 Aligned_cols=32 Identities=16% Similarity=-0.048 Sum_probs=26.4
Q ss_pred EEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhc
Q 003749 180 NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (798)
Q Consensus 180 ~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (798)
.++++.+ .++++|||||+|.+.++|.+|+..+
T Consensus 2 ~~kl~ln---~~~~~G~~fV~f~~~~~A~~al~~~ 33 (158)
T 2kn4_A 2 QYKLILN---GKTLKGETTTEAVDAATAEKVFKQY 33 (158)
T ss_dssp EEEEEEE---CSSCEEEEEEECSSHHHHHHHHHHH
T ss_pred cEEEEec---CccccchhHHHHHHHHhHHHHHHhh
Confidence 4566665 2367999999999999999999877
No 461
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.52 E-value=0.18 Score=39.04 Aligned_cols=71 Identities=13% Similarity=0.146 Sum_probs=51.3
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCC-cceEEEEeCChhHHHHHHHhcccCCeeecce
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKN-VGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~ 224 (798)
-+|-|..||+..|++++.+.++..-++.....+..+...+.+ -+.|+|.|.+.++...-.+.. +|+.+.+.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f--~g~~F~D~ 81 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRF--DGYIFLDS 81 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHS--TTEEEECT
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHc--CCcEEEeC
Confidence 389999999999999988888766554333333331222222 367899999999999999988 99887543
No 462
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.17 E-value=0.57 Score=52.15 Aligned_cols=52 Identities=8% Similarity=-0.044 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003749 712 IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAG 765 (798)
Q Consensus 712 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g 765 (798)
...+..-|.+|+....|.++++||.+.|+..+.. +-|...+..|+..|.+.+
T Consensus 609 ~kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 609 EKHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 3456778999999999999999999999999874 568899999999998876
No 463
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.73 E-value=13 Score=37.89 Aligned_cols=93 Identities=12% Similarity=0.009 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHH--
Q 003749 441 MMMDGYTIIGNEEKCLIVFERLKECGFSPS-----IISYGCLINLYTKIGKVSKALEVSKVMKSSG--IKHNMKTYSM-- 511 (798)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~-- 511 (798)
.|+..|...|++.+|.+++.++.+.--..| ..+|..-+.+|...+++.++...+....... +.++......
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 567777788888888777777765311111 3345555677788888888887777665421 1122222111
Q ss_pred --HHHHHH-hcCCHHHHHHHHHHHH
Q 003749 512 --LINGFL-KLKDWANVFAVFEDVM 533 (798)
Q Consensus 512 --ll~~~~-~~~~~~~a~~~~~~~~ 533 (798)
-...+. ..++|..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 122344 5677777777776553
No 464
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.40 E-value=17 Score=36.97 Aligned_cols=220 Identities=9% Similarity=0.061 Sum_probs=94.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHcCCChHHHHHHHHHHHHCC--CCCCcccHHHHH-
Q 003749 512 LINGFLKLKDWANVFAVFEDVMRDGLKPD-----VVLYNNIIRAFCGMGNMDRAIHIVKEMQKER--HRPTSRTFMPII- 583 (798)
Q Consensus 512 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li- 583 (798)
|+..|...|++.+|..++..+.+.=-..| ..++..-+.+|...+++.++...+....... +.++... .+.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i-~a~i~ 183 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV-QGALD 183 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH-HHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH-HHHHH
Confidence 55566666666666666665554211111 2234445566666777777766666554321 1111111 1111
Q ss_pred ----HHHH-hcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHH
Q 003749 584 ----HGFA-RAGEMKRALEIFDMMRRSGCIPT------VHTFNALILGLVEKRQMEKAIEILD-EMTLAGISPNEHTYTT 651 (798)
Q Consensus 584 ----~~~~-~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~li~~~~~~~~~~~A~~~~~-~m~~~~~~p~~~t~~~ 651 (798)
..+. ..++|..|...|-+..+.--..+ ...|.. +.+.....+ .+...++. .....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlv-L~aLl~~~r-~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYML-LCKIMLGQS-DDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHTTCG-GGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHH-HHHHHcCCH-HHHHHHhccccccccCCccHHHHHH
Confidence 1234 56777777666655432100001 112222 222222221 22222221 1111112344555556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003749 652 IMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGD 731 (798)
Q Consensus 652 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 731 (798)
++.+| ..+++.+...+++.... .+..|......+-..+-+. .. ..+.++.+ +-...++..|...+.- .
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~~I--r~---~~L~~i~~---pYsrIsl~~iA~~l~l--s 329 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYDTM--LE---QNLCRIIE---PYSRVQVAHVAESIQL--P 329 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHHHH--HH---HHHHHHHT---TCSEEEHHHHHHHHTC--C
T ss_pred HHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHHHH--HH---HHHHHHhH---hhceeeHHHHHHHHCc--C
Confidence 66554 45666666666555432 2334544221111111000 01 11111121 2233445555555532 5
Q ss_pred HHHHHHHHHHHHHcC
Q 003749 732 VWEAADLMQQMKQEG 746 (798)
Q Consensus 732 ~~~A~~~~~~m~~~g 746 (798)
.+++...+-+|+..|
T Consensus 330 ~~evE~~L~~lI~dg 344 (394)
T 3txn_A 330 MPQVEKKLSQMILDK 344 (394)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 778888888888765
No 465
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.18 E-value=3.8 Score=48.98 Aligned_cols=192 Identities=12% Similarity=0.094 Sum_probs=101.5
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------------------hc
Q 003749 336 NLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAK--------------------ER 395 (798)
Q Consensus 336 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------------~~ 395 (798)
.++..+.+.+.++-+.++...+ +-+......++.+|...|++++|.+.|.+.. ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3444555556665555543322 2244444555666666666666666665431 11
Q ss_pred CC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 003749 396 HA--TLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPI----DIYHMMMDGYTIIGNEEKCLIVFERLKECGFSP 469 (798)
Q Consensus 396 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 469 (798)
.. ..-..-|.-++..+-+.+.++.+.+.-+..++.....+. ..|..+.+.+...|++++|...+..+.....+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 01 112233455666777777777777776666654322221 25667777777777777777777776654333
Q ss_pred CHHHHHHHHHHHHHcCCH------------HHHHHHHHHH-HHC-CCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 003749 470 SIISYGCLINLYTKIGKV------------SKALEVSKVM-KSS-GIKHNMKTYSMLINGFLKLKDWANVF-AVFEDVMR 534 (798)
Q Consensus 470 ~~~~~~~li~~~~~~g~~------------~~A~~~~~~m-~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~ 534 (798)
......|+..++..|+. ++..+++..- +.. ........|..|-..+...|++..|- -+|+.+.+
T Consensus 971 -~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 33455555555555544 3334444322 211 11222344566666666777776654 44555544
No 466
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.54 E-value=1.4 Score=45.30 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 003749 685 EALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ-----EGVQPDVHT 753 (798)
Q Consensus 685 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~ 753 (798)
..++.++...|++++|...+..+.... +-+...|..||.+|.+.|+..+|++.|++..+ .|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344555556666666666665555443 44555666666666666666666666655432 366665554
No 467
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.96 E-value=2.9 Score=36.19 Aligned_cols=62 Identities=13% Similarity=0.015 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-------HHHHHHHHHHHccCChHHHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARG-IEPTL-------HVYTNLIHAYAVGRDMEEALSCVRKMKE 359 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 359 (798)
.+..-+..+...|.++.|+-+.+.+.... ..++. .++..+..++...|+|..|...|++.++
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34455677788888988888888766541 12231 1566677888889999999999988654
No 468
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.27 E-value=21 Score=35.14 Aligned_cols=111 Identities=12% Similarity=0.078 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHH----HHHHHcCCCCChhhHHHHHH
Q 003749 369 YSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALV----RDMEEEGIDAPIDIYHMMMD 444 (798)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~m~~~~~~~~~~~~~~l~~ 444 (798)
|.++..-|.+.+++++|++++.... ..+.+.|+...|.++. +-+.+.+++.+......|+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3445556777888888888765542 2344556655544443 33444566666666666666
Q ss_pred HHHhcCCHHHH-HHHHHHHH----HCC--CCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003749 445 GYTIIGNEEKC-LIVFERLK----ECG--FSPSIISYGCLINLYTKIGKVSKALEVS 494 (798)
Q Consensus 445 ~~~~~g~~~~A-~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 494 (798)
.+......+-. ..+.+++. +.| ..-|......+...|.+.+++.+|...|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 65544432111 11112221 111 1224555566666677777766666655
No 469
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.73 E-value=22 Score=34.90 Aligned_cols=113 Identities=11% Similarity=0.125 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH----HHHHHcCCCCCHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCV----RKMKEEGIEMSLVTYSII 372 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~----~~m~~~g~~~~~~~~~~l 372 (798)
..|.++.+-|.+.+++++|++++..-.. .+.+.|+...|.++. +-+.+.++++|......|
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3466777778888888888887654322 233445555544443 444556677777776677
Q ss_pred HHHHHhcCCHHHH-HHHHHHHHh----cC--CCCChhhHHHHHHHHHhcCChHHHHHHH
Q 003749 373 VGGFAKMGNAEAA-DHWFEEAKE----RH--ATLNAIIYGNIIYAQCQTRNMERAEALV 424 (798)
Q Consensus 373 ~~~~~~~g~~~~A-~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 424 (798)
+..+.....-+-. ..+.++++. .| ..-+......+...|.+.+++.+|+..|
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 7766655432111 112222211 11 2235556666666677777766666555
No 470
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.21 E-value=3.5 Score=35.67 Aligned_cols=117 Identities=5% Similarity=0.035 Sum_probs=67.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcC-CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCChhh
Q 003749 334 YTNLIHAYAVGRDMEEALSCVRKMKEEG-IEMS-------LVTYSIIVGGFAKMGNAEAADHWFEEAKERH--ATLNAII 403 (798)
Q Consensus 334 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~ 403 (798)
+-.-+..+...|.++.|+-+.+.+.... ..++ ..++..+++++...|++..|...|++.+... ..-+..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4445667778889999888877755321 1222 2367788899999999999999999975431 1101111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 404 YGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (798)
Q Consensus 404 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (798)
...+. .. ..... ......+...-..+..+|.+.+++++|+.+++.+.
T Consensus 103 ~~~~~-~~---ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 103 RPSTG-NS---ASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccccc-cc---CCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 10110 00 00000 00112234455557788888888888888877653
No 471
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.81 E-value=11 Score=44.95 Aligned_cols=187 Identities=11% Similarity=0.104 Sum_probs=111.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--------------
Q 003749 580 MPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLA----G-------------- 641 (798)
Q Consensus 580 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~-------------- 641 (798)
..++..+.+.+.++.+.++.... .-+....-.+..+|...|++++|..+|.+.... .
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34555566666666665544322 124444344555677788888888877653210 0
Q ss_pred ----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 003749 642 ----ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDV----FTYEALLKACCKSGRMQSALAVTKEMSAQKIP 713 (798)
Q Consensus 642 ----~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 713 (798)
...-..-|..++..+.+.+.++.+.++-..+++....-+. ..|..+.+.+...|++++|...+-.+....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~-- 968 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP-- 968 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--
Confidence 0111234677888888888899988888877765332222 257888899999999999998888777654
Q ss_pred CCHHHHHHHHHHHHHcCCHHHH------------HHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCccccccc
Q 003749 714 RNTFVYNILIDGWARRGDVWEA------------ADLMQQMKQE--GVQPDVHTYTSFINACSKAGDMQVRFSI 773 (798)
Q Consensus 714 ~~~~~~~~l~~~~~~~g~~~~A------------~~~~~~m~~~--g~~pd~~~~~~l~~~~~~~g~~~~a~~~ 773 (798)
.-......|+..++..|..++- .+++....+. .......-|..|-.-....|+...|.++
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~v 1042 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAI 1042 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHH
Confidence 3455667777777765555444 3333322111 0111112355555556677777777665
No 472
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.55 E-value=9.7 Score=31.46 Aligned_cols=66 Identities=11% Similarity=0.031 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 679 LDVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 679 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
++..+--.+.+++.+..+ ..+++.+++++.+.+-......+-.|.-++.+.|++++|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444445555555543 234555555555433111233444455555666666666666666554
No 473
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.19 E-value=4.9 Score=41.13 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=32.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 406 NIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (798)
Q Consensus 406 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (798)
.++..+...|+.+++...+..+.... +.+...|..+|.+|...|+..+|++.|+++.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555666666666665555543 3455566666666666666666666665553
No 474
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.47 E-value=13 Score=28.96 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003749 699 SALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (798)
Q Consensus 699 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (798)
+..+-++.+...++.|+..+....+.+|.|.+++..|+++|+-.+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444455555555555555555566666666666666665555544
No 475
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=84.34 E-value=0.31 Score=42.34 Aligned_cols=42 Identities=12% Similarity=-0.042 Sum_probs=35.7
Q ss_pred CCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeeccccc
Q 003749 191 EKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGR 234 (798)
Q Consensus 191 ~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~~~~ 234 (798)
.+.+|+++|+|.+.++|.+|++.+ .||..++| .+.+.++..+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~-~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQY-ANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHH-HHHHTCCC-EEEEETTTTE
T ss_pred ccccccceeeecCHHHHHHHHHHH-hcCCCCCC-ceecccccCc
Confidence 455999999999999999999854 26889999 9999988764
No 476
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.04 E-value=5.3 Score=32.83 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=30.6
Q ss_pred CCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003749 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIH 339 (798)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 339 (798)
|++......+++|-+.+|+.-|+++|+-++.+ +.+...+|..++.
T Consensus 86 PeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 86 PEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 67777777778888888888888888777664 2334445555553
No 477
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.62 E-value=19 Score=30.24 Aligned_cols=71 Identities=10% Similarity=0.033 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003749 678 ELDVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD 750 (798)
Q Consensus 678 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 750 (798)
.++..+--.+.+++.+..+ ..+++.+++++...+-.......-.|.-++.+.|++++|.++.+.+++ +.|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 3455555555566666554 345666666666533112233444556666777777777777777766 3554
No 478
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.30 E-value=14 Score=38.29 Aligned_cols=98 Identities=10% Similarity=0.049 Sum_probs=52.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHH--HH
Q 003749 438 IYHMMMDGYTIIGNEEKCLIVFERLKEC--GFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS---GIKHNMKT--YS 510 (798)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~--~~ 510 (798)
++..++..|.+.|+++.|.+.|.++... +..--...+-.++..+...+++..+...+.++... +..++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4556666666666666666666666553 11222445556666677777777777766666432 11111110 00
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 003749 511 MLINGFLKLKDWANVFAVFEDVMRD 535 (798)
Q Consensus 511 ~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (798)
.-...+...++|.+|...|-++...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 0111223457777777777665543
No 479
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.84 E-value=11 Score=39.19 Aligned_cols=59 Identities=15% Similarity=0.002 Sum_probs=27.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 334 YTNLIHAYAVGRDMEEALSCVRKMKEE--GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEA 392 (798)
Q Consensus 334 ~~~ll~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 392 (798)
...+...|.+.|++++|.++|.++.+. +..--...+..++..+...+++..+...++++
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 334444455555555555555554432 11112334444445555555555555555444
No 480
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=82.06 E-value=15 Score=30.41 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003749 644 PNEHTYTTIMHGYASLGD---TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ 710 (798)
Q Consensus 644 p~~~t~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (798)
++..|--.+.+++.+..+ ..+++.+++++.+.+..-....+-.|.-++.+.|++++|.++.+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 444444444444444443 3345555555554432112333334444555555555555555555543
No 481
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.03 E-value=16 Score=30.05 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 699 SALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFIN 759 (798)
Q Consensus 699 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~ 759 (798)
+..+-++.+...++.|+..+....+.+|.|.+|+..|+++|+-.+.+ ......+|.-+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 44445555555666667777777777777777777777777666655 2233444555544
No 482
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=80.81 E-value=0.32 Score=52.82 Aligned_cols=13 Identities=8% Similarity=0.059 Sum_probs=7.1
Q ss_pred CchHHHHHHhccc
Q 003749 163 IKKHLVMEFFRQF 175 (798)
Q Consensus 163 ~~~~~l~~~f~~~ 175 (798)
++.++.++++...
T Consensus 155 i~r~~ae~~L~~~ 167 (535)
T 2h8h_A 155 ITRRESERLLLNA 167 (535)
T ss_dssp CCHHHHHHHHTCT
T ss_pred cCHHHHHHHhccC
Confidence 3455666666544
No 483
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=79.72 E-value=76 Score=34.70 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=11.0
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 003749 477 LINLYTKIGKVSKALEVSK 495 (798)
Q Consensus 477 li~~~~~~g~~~~A~~~~~ 495 (798)
....+.-.|+++.|++.+-
T Consensus 300 Yf~vLlLtgqFE~AI~~L~ 318 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTY 318 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHH
Confidence 3445555666666666554
No 484
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.53 E-value=13 Score=28.64 Aligned_cols=78 Identities=14% Similarity=0.081 Sum_probs=47.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003749 311 DMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFE 390 (798)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 390 (798)
..++|..+-+.+...+. ...+--.-+..+.+.|+|++|+.+.+.+- -||...|..|.. .|.|.-+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 56777777777776642 22222233355667788888877765543 467766665533 46677777777666
Q ss_pred HHHhcC
Q 003749 391 EAKERH 396 (798)
Q Consensus 391 ~~~~~~ 396 (798)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 665543
No 485
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=77.13 E-value=0.48 Score=51.38 Aligned_cols=16 Identities=13% Similarity=0.422 Sum_probs=9.0
Q ss_pred eeecCCCccCchHHHH
Q 003749 154 IFVGNLPNWIKKHLVM 169 (798)
Q Consensus 154 ~~v~nl~~~~~~~~l~ 169 (798)
-|-|+|+..--++.|+
T Consensus 150 wy~g~i~r~~ae~~L~ 165 (535)
T 2h8h_A 150 WYFGKITRRESERLLL 165 (535)
T ss_dssp TBCCSCCHHHHHHHHT
T ss_pred eeccccCHHHHHHHhc
Confidence 3566666655555553
No 486
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.05 E-value=13 Score=28.66 Aligned_cols=78 Identities=15% Similarity=-0.003 Sum_probs=46.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003749 311 DMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFE 390 (798)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 390 (798)
..++|..+-+.+...+. ...+--.-+..+.+.|+|++|+.+.+.+- -||...|..|. -.|.|.-+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 46677777777776642 22222233355667778887777655442 46666665553 346777777777776
Q ss_pred HHHhcC
Q 003749 391 EAKERH 396 (798)
Q Consensus 391 ~~~~~~ 396 (798)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 665553
No 487
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=74.93 E-value=1e+02 Score=33.57 Aligned_cols=52 Identities=13% Similarity=-0.011 Sum_probs=26.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 586 FARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMT 638 (798)
Q Consensus 586 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 638 (798)
..+.|+++.|...|..|...... .....--+..++...|+.++|..+|..+.
T Consensus 295 Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 33556666666666655432111 22222333345555666666666666554
No 488
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=74.91 E-value=28 Score=27.11 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=34.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003749 346 DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 346 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
+.-+..+-++.+...++-|+..+....+.++.|.+++..|.++|+-+..+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44556666666666666677777777777777777777777777776654
No 489
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=73.82 E-value=69 Score=31.18 Aligned_cols=26 Identities=4% Similarity=-0.281 Sum_probs=16.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 003749 435 PIDIYHMMMDGYTIIGNEEKCLIVFE 460 (798)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (798)
+......+...|.+.|++.+|...|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 45556666666666677666666554
No 490
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=72.49 E-value=11 Score=37.74 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCC
Q 003749 614 FNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGD--TGKAFEYFTKLRNEGLE 678 (798)
Q Consensus 614 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~ 678 (798)
.+.++.-|...++.++|...++++.... .........+..++-+.++ .+...+++..+...|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~-fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTT-CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCc-chHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 4556666777777777777777764211 1122334444444444332 34456666666666554
No 491
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=72.21 E-value=26 Score=31.40 Aligned_cols=55 Identities=15% Similarity=0.101 Sum_probs=43.9
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003749 345 RDMEEALSCVRKMKEEGIEMS-LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL 399 (798)
Q Consensus 345 g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 399 (798)
++..++.++|..|..+|+--. ...|......+-..|++++|.++|+..++++..|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 447789999999988876543 5567888888888999999999999988886655
No 492
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=71.00 E-value=6.5 Score=41.68 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=44.0
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (798)
..++|+ .+..+...+|.++|+.||.| +|+.+.| ..+||.|.+.+.|..++..+
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd--------t~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD--------TSAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS--------SEEEEECSCHHHHHHHHHHH
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC--------CeEEEEECCHHHHHHHHHHH
Confidence 466666 88888999999999999954 5665543 57999999999999999988
No 493
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=70.07 E-value=48 Score=27.78 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003749 349 EALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 349 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
+++.+++++.+.+....-.....|.-++.+.|++++|++..+.+++.
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34444444444322112223333334444444444444444444443
No 494
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=69.92 E-value=11 Score=27.70 Aligned_cols=60 Identities=12% Similarity=0.168 Sum_probs=38.6
Q ss_pred ccCchHHHHHHhcccCc-----ceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeeccc
Q 003749 161 NWIKKHLVMEFFRQFGP-----IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232 (798)
Q Consensus 161 ~~~~~~~l~~~f~~~g~-----v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~~ 232 (798)
..++..+|..++..-+. |-.+++.. .|.||+-.. +.+..+++.+ ++..+.|+.++|+.++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d---------~~s~v~v~~-~~~~~~~~~l--~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMD---------NASYVEILN-GKGPHVLKVM--KNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECS---------SCEEEEECT-TCHHHHHHHH--TTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeC---------CcEEEEECH-HHHHHHHHHh--ccccCcCceEEEEECC
Confidence 35566677777765443 34566643 489999955 6688899988 9999999999987653
No 495
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=66.88 E-value=31 Score=26.69 Aligned_cols=80 Identities=10% Similarity=-0.012 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 003749 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEAL 423 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 423 (798)
....+||..+-+.+...+- ...+-.+-+..+...|+|++|+.+.+... .||...|.+| +-.+.|.-+++..-
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~r 91 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLAL--CEYRLGLGSALESR 91 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHH--HHHHHTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHH
Q ss_pred HHHHHHcC
Q 003749 424 VRDMEEEG 431 (798)
Q Consensus 424 ~~~m~~~~ 431 (798)
+.++...|
T Consensus 92 L~~la~sg 99 (116)
T 2p58_C 92 LNRLARSQ 99 (116)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
No 496
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=66.45 E-value=73 Score=28.56 Aligned_cols=202 Identities=14% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 003749 265 WHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVG 344 (798)
Q Consensus 265 ~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 344 (798)
|....|.........+-..+-.....+..++...-...+..+.+.|+.+..-.+.+.+... +..+-...+.++.+.
T Consensus 2 w~~~~~~~~~~~~~~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~----~~~vr~~a~~aL~~~ 77 (211)
T 3ltm_A 2 WSHPQFEKAAAPLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDE----DAWVRRAAADALGQI 77 (211)
T ss_dssp --------------CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS----CHHHHHHHHHHHHHH
T ss_pred CcccccchhhhHhhcCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCC----CHHHHHHHHHHHHhh
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 003749 345 RDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALV 424 (798)
Q Consensus 345 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 424 (798)
++.+..-.+.+.+... +..+-...+.++.+.|+.+..-.+.+.+... +..+-...+.++.+.+. .++...+
T Consensus 78 ~~~~~~~~L~~~l~~~----~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~----~~~vr~~a~~aL~~~~~-~~~~~~L 148 (211)
T 3ltm_A 78 GDERAVEPLIKALKDE----DGWVRQSAAVALGQIGDERAVEPLIKALKDE----DWFVRIAAAFALGEIGD-ERAVEPL 148 (211)
T ss_dssp CCGGGHHHHHHHTTCS----SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS----SHHHHHHHHHHHHHHCC-GGGHHHH
T ss_pred CCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHhCcHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCC-HHHHHHH
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC
Q 003749 425 RDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGK 486 (798)
Q Consensus 425 ~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 486 (798)
..+.+ .++..+-...+.++...+. .++...+.++.+. ++..+-...+.++.+.+.
T Consensus 149 ~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 149 IKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC---
T ss_pred HHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcCC
No 497
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=65.07 E-value=65 Score=31.25 Aligned_cols=142 Identities=11% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCh
Q 003749 621 LVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKS---GRM 697 (798)
Q Consensus 621 ~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~ 697 (798)
+...|++++|+..|+.++ +..++.......+.+++.+++....+. +...-+..-.+. .+.
T Consensus 124 ~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icrEY-------ilal~iEl~Rr~l~~~~~ 186 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAI----------YRITLLMVDDAEDEKLAHKILETAREY-------ILGLSIELERRSLKEGNT 186 (325)
T ss_dssp HHHTTCHHHHHHHHHHHH----------HHHHTCCBCSSHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTCCTTCH
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeeccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcCcccH
Q ss_pred HHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCcccccccc
Q 003749 698 QSALAVTKEMSAQKIPRNTF--VYNILIDGWARRGDVWEAADLMQQMKQEGVQPD-VHTYTSFINACSKAGDMQVRFSIP 774 (798)
Q Consensus 698 ~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~l~~~~~~~g~~~~a~~~~ 774 (798)
.+..++.-.+..-++.|... +...-+....+.+++..|..+.+++++.+-.++ ...-..++..|-+.+.-..-+...
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~~~Da~eidyD 266 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSMASDAIPIDFD 266 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTSCCCSSCCSCC
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCccccCCC
Q ss_pred ccchh
Q 003749 775 MLTKF 779 (798)
Q Consensus 775 ~~~~~ 779 (798)
+..+|
T Consensus 267 ~~~~F 271 (325)
T 3mv2_A 267 PYAKF 271 (325)
T ss_dssp TTSCE
T ss_pred CCCCc
No 498
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=64.00 E-value=1.4 Score=53.58 Aligned_cols=148 Identities=16% Similarity=0.094 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003749 6 SLSAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSP 85 (798)
Q Consensus 6 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ppp~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~p~~ 85 (798)
++.+.|.-.+..+...+.+|...|+++.-.|..|.-.|..|.-.|..|.-.+.+|...|+.|.-.+..+.-++..|.-.|
T Consensus 1584 ~sptsp~~sp~s~~~~ptsp~ysp~sp~~sptsp~~sptsp~ysP~sp~~sptsp~ysp~sp~~sp~sp~y~p~sp~~sp 1663 (1733)
T 1twf_A 1584 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1663 (1733)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcchhhhcccccc
Q 003749 86 PSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGK 153 (798)
Q Consensus 86 p~~~~~~~~~~~~~~~ppppp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (798)
..|++.+..+.=.+.+|.-.|..|.-.+..+.-.+..+.-.|..+.-.+.++.-.....+.+.+.+..
T Consensus 1664 ~sp~~~p~sp~y~p~sp~y~p~sp~~sp~sp~~~p~~p~~~p~sp~~~p~~p~~~~~~~~~~~~~~~~ 1731 (1733)
T 1twf_A 1664 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENEN 1731 (1733)
T ss_dssp --------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhhhhhhhcc
No 499
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=63.42 E-value=30 Score=26.70 Aligned_cols=80 Identities=11% Similarity=0.014 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 003749 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEAL 423 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 423 (798)
....+||..+-+.+...+- ...+-.+-+..+...|+|++|+.+.+... .||...|.+| +-.+.|.-+++..-
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~r 90 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFAL--CEWHLGLGAALDRR 90 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHH--HHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHH
Q ss_pred HHHHHHcC
Q 003749 424 VRDMEEEG 431 (798)
Q Consensus 424 ~~~m~~~~ 431 (798)
+.++...|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
No 500
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.10 E-value=64 Score=28.89 Aligned_cols=86 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChHHHHHH
Q 003749 627 MEKAIEILDEMTLAGISPNEHTYTTIMHGYAS--LGDTGKAFEYFTKLRNEGLELD-VFTYEALLKACCKSGRMQSALAV 703 (798)
Q Consensus 627 ~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 703 (798)
++.+.+.|...... .-|..-...-+..--. .++..++.++|..|...|+--. ...|......+...|++++|..+
T Consensus 60 LErc~~~F~~~~rY--kND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~V 137 (202)
T 3esl_A 60 MERCLIYIQDMETY--RNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVL 137 (202)
T ss_dssp HHHHHHHHTTCGGG--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhcccccc--cCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Q ss_pred HHHHHhCCCCC
Q 003749 704 TKEMSAQKIPR 714 (798)
Q Consensus 704 ~~~~~~~~~~~ 714 (798)
|+.-++.+-.|
T Consensus 138 y~~GI~~~A~P 148 (202)
T 3esl_A 138 LELGAENNCRP 148 (202)
T ss_dssp HHHHHHTTCBS
T ss_pred HHHHHHcCCcc
Done!