Query 003750
Match_columns 798
No_of_seqs 175 out of 394
Neff 3.1
Searched_HMMs 46136
Date Thu Mar 28 11:23:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003750.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003750hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4299 PHD Zn-finger protein 98.6 1.1E-08 2.4E-13 115.8 1.6 56 424-481 253-313 (613)
2 PF00249 Myb_DNA-binding: Myb- 98.6 4.9E-08 1.1E-12 76.7 4.0 48 735-791 1-48 (48)
3 smart00249 PHD PHD zinc finger 98.3 7E-07 1.5E-11 66.7 3.3 43 426-470 1-47 (47)
4 KOG0383 Predicted helicase [Ge 98.3 2.9E-07 6.3E-12 106.6 1.6 55 419-475 42-96 (696)
5 smart00717 SANT SANT SWI3, AD 98.2 2.1E-06 4.5E-11 64.1 5.1 48 735-792 1-48 (49)
6 PF00628 PHD: PHD-finger; Int 98.2 4.1E-07 8.8E-12 71.6 1.2 44 426-471 1-49 (51)
7 cd00167 SANT 'SWI3, ADA2, N-Co 98.1 3.9E-06 8.5E-11 61.9 4.5 45 737-791 1-45 (45)
8 PF13921 Myb_DNA-bind_6: Myb-l 98.1 5.2E-06 1.1E-10 67.3 4.7 44 738-792 1-45 (60)
9 KOG1973 Chromatin remodeling p 97.7 1.7E-05 3.7E-10 83.1 2.1 43 426-471 223-266 (274)
10 PLN03212 Transcription repress 97.6 8.6E-05 1.9E-09 77.7 5.7 55 729-792 19-73 (249)
11 PLN03212 Transcription repress 97.5 6.8E-05 1.5E-09 78.5 4.0 51 733-794 76-126 (249)
12 cd04718 BAH_plant_2 BAH, or Br 97.4 7.6E-05 1.6E-09 73.1 2.2 34 447-480 1-34 (148)
13 PLN03091 hypothetical protein; 97.4 0.00025 5.3E-09 79.2 5.9 54 731-793 10-63 (459)
14 PLN03091 hypothetical protein; 97.4 0.00014 3E-09 81.2 3.9 50 734-794 66-115 (459)
15 PF13325 MCRS_N: N-terminal re 97.2 0.00023 5E-09 72.6 3.5 61 731-794 69-129 (199)
16 KOG1244 Predicted transcriptio 97.0 0.00033 7.1E-09 74.5 2.0 51 419-471 274-329 (336)
17 KOG0955 PHD finger protein BR1 96.8 0.00075 1.6E-08 81.9 3.4 55 419-477 214-273 (1051)
18 TIGR01557 myb_SHAQKYF myb-like 96.8 0.0018 3.9E-08 54.3 4.4 45 733-786 1-49 (57)
19 COG5141 PHD zinc finger-contai 96.6 0.00079 1.7E-08 76.1 1.5 48 423-474 192-244 (669)
20 COG5034 TNG2 Chromatin remodel 96.5 0.0012 2.6E-08 69.7 1.9 41 429-471 225-268 (271)
21 KOG0825 PHD Zn-finger protein 96.4 0.0014 3E-08 77.2 2.1 50 421-472 212-265 (1134)
22 KOG1473 Nucleosome remodeling 96.2 0.00077 1.7E-08 81.5 -1.4 55 419-474 423-480 (1414)
23 PF13873 Myb_DNA-bind_5: Myb/S 96.1 0.0054 1.2E-07 52.2 3.2 59 735-793 2-71 (78)
24 KOG0048 Transcription factor, 96.0 0.0058 1.3E-07 62.8 3.6 49 734-793 61-109 (238)
25 PF13837 Myb_DNA-bind_4: Myb/S 95.9 0.0019 4E-08 55.5 -0.2 59 735-794 1-67 (90)
26 KOG0956 PHD finger protein AF1 95.9 0.0022 4.7E-08 74.9 0.3 60 427-498 8-72 (900)
27 KOG1473 Nucleosome remodeling 95.7 0.0037 8.1E-08 75.9 1.2 82 388-471 304-389 (1414)
28 PF09111 SLIDE: SLIDE; InterP 95.0 0.018 3.8E-07 54.7 2.9 59 733-793 47-112 (118)
29 KOG0048 Transcription factor, 94.9 0.031 6.7E-07 57.5 4.6 49 735-792 9-57 (238)
30 KOG1245 Chromatin remodeling c 94.9 0.0067 1.4E-07 76.0 -0.3 50 420-471 1104-1156(1404)
31 PF13831 PHD_2: PHD-finger; PD 94.9 0.0071 1.5E-07 46.7 -0.1 34 435-471 3-36 (36)
32 KOG0049 Transcription factor, 93.7 0.058 1.2E-06 63.3 3.9 54 733-796 358-411 (939)
33 KOG4443 Putative transcription 93.6 0.033 7.2E-07 65.2 1.8 44 426-471 70-116 (694)
34 KOG0957 PHD finger protein [Ge 93.2 0.035 7.5E-07 63.5 1.1 45 424-470 544-595 (707)
35 KOG0457 Histone acetyltransfer 92.6 0.12 2.5E-06 58.4 4.0 49 736-794 73-121 (438)
36 KOG0051 RNA polymerase I termi 92.3 0.11 2.4E-06 60.7 3.6 50 734-795 383-432 (607)
37 KOG1512 PHD Zn-finger protein 91.6 0.073 1.6E-06 57.7 1.0 43 425-471 315-361 (381)
38 PF15446 zf-PHD-like: PHD/FYVE 91.3 0.1 2.2E-06 52.9 1.6 43 427-471 2-58 (175)
39 KOG0049 Transcription factor, 89.5 0.23 5.1E-06 58.6 2.8 47 731-787 408-454 (939)
40 KOG3612 PHD Zn-finger protein 88.9 0.32 6.9E-06 56.4 3.2 91 379-471 13-106 (588)
41 KOG4323 Polycomb-like PHD Zn-f 88.9 0.17 3.8E-06 57.6 1.1 77 427-505 171-258 (464)
42 PF13771 zf-HC5HC2H: PHD-like 87.1 0.25 5.5E-06 43.0 0.8 46 425-470 37-86 (90)
43 PLN03142 Probable chromatin-re 84.7 0.86 1.9E-05 56.5 4.0 55 733-792 924-985 (1033)
44 KOG0954 PHD finger protein [Ge 84.2 0.49 1.1E-05 56.6 1.6 50 420-473 267-321 (893)
45 PF12776 Myb_DNA-bind_3: Myb/S 83.8 0.79 1.7E-05 40.0 2.3 57 737-793 1-64 (96)
46 KOG4299 PHD Zn-finger protein 82.7 0.68 1.5E-05 54.4 1.9 48 423-472 46-94 (613)
47 KOG2656 DNA methyltransferase 78.8 1.5 3.2E-05 49.6 2.7 53 736-794 131-188 (445)
48 KOG4282 Transcription factor G 76.6 1.5 3.3E-05 47.2 2.0 59 735-796 54-118 (345)
49 PF13832 zf-HC5HC2H_2: PHD-zin 76.5 1.8 3.9E-05 39.2 2.2 34 423-456 54-88 (110)
50 KOG0383 Predicted helicase [Ge 75.8 0.47 1E-05 56.6 -2.2 51 419-471 501-552 (696)
51 KOG0957 PHD finger protein [Ge 75.6 1.6 3.4E-05 50.7 1.9 48 426-475 121-181 (707)
52 KOG1246 DNA-binding protein ju 75.4 2.1 4.6E-05 52.1 3.1 52 420-473 151-204 (904)
53 KOG0956 PHD finger protein AF1 71.6 1.5 3.3E-05 52.4 0.6 49 425-473 118-180 (900)
54 KOG1081 Transcription factor N 70.9 2.1 4.7E-05 48.9 1.6 36 420-455 85-126 (463)
55 KOG4443 Putative transcription 68.6 1.4 3.1E-05 52.3 -0.4 72 423-497 17-94 (694)
56 COG5114 Histone acetyltransfer 68.3 4.3 9.3E-05 45.2 3.1 46 736-791 64-109 (432)
57 PF04504 DUF573: Protein of un 67.4 6.1 0.00013 36.5 3.5 59 735-794 4-65 (98)
58 PF08914 Myb_DNA-bind_2: Rap1 66.0 9 0.00019 33.4 4.0 53 735-791 2-57 (65)
59 KOG1279 Chromatin remodeling f 62.5 8.8 0.00019 44.8 4.3 48 732-790 250-297 (506)
60 COG5147 REB1 Myb superfamily p 59.9 3.2 7E-05 48.3 0.3 50 733-794 289-338 (512)
61 COG5259 RSC8 RSC chromatin rem 59.1 6.9 0.00015 45.4 2.6 30 734-769 278-307 (531)
62 PF11793 FANCL_C: FANCL C-term 54.7 1.7 3.7E-05 37.7 -2.3 48 425-473 3-64 (70)
63 KOG0050 mRNA splicing protein 54.4 8.1 0.00018 45.3 2.3 45 734-788 6-50 (617)
64 PF13901 DUF4206: Domain of un 47.0 14 0.00031 37.7 2.5 36 425-471 153-196 (202)
65 KOG0051 RNA polymerase I termi 44.6 22 0.00047 42.5 3.7 58 732-794 433-510 (607)
66 PF14446 Prok-RING_1: Prokaryo 40.8 16 0.00035 31.3 1.5 28 425-454 6-37 (54)
67 KOG1512 PHD Zn-finger protein 40.5 13 0.00029 41.0 1.2 81 385-471 223-315 (381)
68 COG5118 BDP1 Transcription ini 39.7 37 0.0008 39.0 4.4 54 731-795 361-414 (507)
69 PF03107 C1_2: C1 domain; Int 37.2 29 0.00062 25.8 2.1 26 426-453 2-30 (30)
70 PRK14873 primosome assembly pr 35.3 26 0.00056 42.1 2.5 45 420-472 379-430 (665)
71 PF00641 zf-RanBP: Zn-finger i 33.1 16 0.00035 26.7 0.3 13 462-474 2-14 (30)
72 smart00547 ZnF_RBZ Zinc finger 30.4 25 0.00054 24.7 0.8 13 463-475 1-13 (26)
73 KOG4628 Predicted E3 ubiquitin 28.8 27 0.00058 39.3 1.2 42 425-471 230-274 (348)
74 PF07649 C1_3: C1-like domain; 28.4 24 0.00053 25.9 0.5 26 426-453 2-30 (30)
75 COG5147 REB1 Myb superfamily p 28.0 38 0.00081 39.9 2.2 47 731-787 16-62 (512)
76 KOG1829 Uncharacterized conser 26.6 20 0.00043 42.7 -0.3 27 437-472 532-558 (580)
77 PLN03162 golden-2 like transcr 25.9 1.4E+02 0.003 34.5 6.0 60 728-793 230-292 (526)
78 PF09420 Nop16: Ribosome bioge 24.6 1.3E+02 0.0029 29.8 5.0 52 733-792 112-164 (164)
79 PF13639 zf-RING_2: Ring finge 24.6 11 0.00024 29.1 -1.9 25 443-471 20-44 (44)
80 PHA02929 N1R/p28-like protein; 23.8 19 0.0004 38.5 -1.1 64 404-473 154-225 (238)
81 KOG2114 Vacuolar assembly/sort 23.7 45 0.00097 41.5 1.9 45 420-472 836-880 (933)
82 PF06677 Auto_anti-p27: Sjogre 22.7 45 0.00099 27.0 1.1 19 451-470 22-40 (41)
83 KOG1632 Uncharacterized PHD Zn 22.1 47 0.001 37.1 1.5 36 434-471 73-111 (345)
84 cd00162 RING RING-finger (Real 21.5 25 0.00054 25.5 -0.5 41 427-472 2-43 (45)
85 KOG1244 Predicted transcriptio 21.1 26 0.00057 38.6 -0.6 50 422-473 222-284 (336)
86 PF00130 C1_1: Phorbol esters/ 20.8 1E+02 0.0022 24.6 2.8 34 423-458 10-48 (53)
87 smart00184 RING Ring finger. E 20.7 21 0.00045 24.9 -1.0 39 427-470 1-39 (39)
88 COG5141 PHD zinc finger-contai 20.3 42 0.00091 39.7 0.7 73 397-471 272-360 (669)
No 1
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.61 E-value=1.1e-08 Score=115.78 Aligned_cols=56 Identities=30% Similarity=0.774 Sum_probs=51.1
Q ss_pred cccccccCCCCcE---EecCCCCCcccccccccCCC--CccCCCCCccCccccccchHHHHHH
Q 003750 424 QNLCVKCNKDGQL---LSCSSSTCPLAVHENCLGFP--VKFDEKGNFHCPFCAYTLSISEYLE 481 (798)
Q Consensus 424 ~d~C~~C~~~GqL---LcCD~~gCP~ayH~~Clg~~--~~~~peGdW~CP~C~y~ka~~~~~E 481 (798)
.+||..|+..|.. |||| |||.+||..||-|| +...|.|.||||+|.++-.+....+
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD--~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~~in~~~~ 313 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCD--GCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKSVINPKME 313 (613)
T ss_pred HHHHHHhCCccccccceeec--CCchHHHHhhcCCCCCcccCCCCccccCCCeeeeecccchh
Confidence 5799999999998 9999 99999999999999 8899999999999999877665555
No 2
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.58 E-value=4.9e-08 Score=76.70 Aligned_cols=48 Identities=35% Similarity=0.639 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhc
Q 003750 735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC 791 (798)
Q Consensus 735 rr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~ 791 (798)
|.+||.+|++.|++||++|| .++|..|....+ .+||..+++.+|+++.
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g-----~~~W~~Ia~~~~----~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYG-----KDNWKKIAKRMP----GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHST-----TTHHHHHHHHHS----SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhC-----CcHHHHHHHHcC----CCCCHHHHHHHHHhhC
Confidence 56899999999999999999 568999998644 5999999999999874
No 3
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.26 E-value=2.9e-07 Score=106.56 Aligned_cols=55 Identities=38% Similarity=0.799 Sum_probs=50.8
Q ss_pred CCCcccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCccccccch
Q 003750 419 SGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLS 475 (798)
Q Consensus 419 s~~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ka 475 (798)
-+|-+++.|++|+.+|.||||+ .||.+||..|++++..-.|.|+|.||.|.+...
T Consensus 42 ~~~~~~e~c~ic~~~g~~l~c~--tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~ 96 (696)
T KOG0383|consen 42 WDDAEQEACRICADGGELLWCD--TCPASFHASCLGPPLTPQPNGEFICPRCFCPKN 96 (696)
T ss_pred cchhhhhhhhhhcCCCcEEEec--cccHHHHHHccCCCCCcCCccceeeeeeccCCC
Confidence 4588899999999999999999 999999999999999999999999999976654
No 5
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.22 E-value=2.1e-06 Score=64.10 Aligned_cols=48 Identities=38% Similarity=0.661 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750 735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 792 (798)
Q Consensus 735 rr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K 792 (798)
+.+||.+|++.|+.+|.+|| .+.|..|.... .+||..+++++|+++.+
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g-----~~~w~~Ia~~~-----~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYG-----KNNWEKIAKEL-----PGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHC-----cCCHHHHHHHc-----CCCCHHHHHHHHHHHcC
Confidence 35899999999999999999 57999999753 48999999999999875
No 6
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.22 E-value=4.1e-07 Score=71.65 Aligned_cols=44 Identities=34% Similarity=0.902 Sum_probs=37.7
Q ss_pred cccccCC---CCcEEecCCCCCcccccccccCCCCc--cCCCCCccCcccc
Q 003750 426 LCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVK--FDEKGNFHCPFCA 471 (798)
Q Consensus 426 ~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~--~~peGdW~CP~C~ 471 (798)
+|.+|+. ++.||.|| +|...||..|++++.. ..+.+.|+||.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~--~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCD--SCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBS--TTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcC--CCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4778887 88899999 9999999999999854 4456699999995
No 7
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.11 E-value=3.9e-06 Score=61.94 Aligned_cols=45 Identities=38% Similarity=0.799 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhc
Q 003750 737 PWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC 791 (798)
Q Consensus 737 ~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~ 791 (798)
+||.+|++.|+.++.+|| .++|..|.... .+||..+++++|.++.
T Consensus 1 ~Wt~eE~~~l~~~~~~~g-----~~~w~~Ia~~~-----~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYG-----KNNWEKIAKEL-----PGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHC-----cCCHHHHHhHc-----CCCCHHHHHHHHHHhC
Confidence 599999999999999999 58999999853 4699999999999874
No 8
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.06 E-value=5.2e-06 Score=67.27 Aligned_cols=44 Identities=39% Similarity=0.787 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhh-hcc
Q 003750 738 WTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRN-MCK 792 (798)
Q Consensus 738 WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRN-L~K 792 (798)
||.+|++.|+.+|++|| .+|+.|... | +.||..++++||++ |..
T Consensus 1 WT~eEd~~L~~~~~~~g------~~W~~Ia~~----l-~~Rt~~~~~~r~~~~l~~ 45 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG------NDWKKIAEH----L-GNRTPKQCRNRWRNHLRP 45 (60)
T ss_dssp S-HHHHHHHHHHHHHHT------S-HHHHHHH----S-TTS-HHHHHHHHHHTTST
T ss_pred CCHHHHHHHHHHHHHHC------cCHHHHHHH----H-CcCCHHHHHHHHHHHCcc
Confidence 99999999999999999 489999975 3 47999999999999 543
No 9
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.68 E-value=1.7e-05 Score=83.08 Aligned_cols=43 Identities=30% Similarity=0.811 Sum_probs=37.9
Q ss_pred cccccCCCCcEEecCCCCCc-ccccccccCCCCccCCCCCccCcccc
Q 003750 426 LCVKCNKDGQLLSCSSSTCP-LAVHENCLGFPVKFDEKGNFHCPFCA 471 (798)
Q Consensus 426 ~C~~C~~~GqLLcCD~~gCP-~ayH~~Clg~~~~~~peGdW~CP~C~ 471 (798)
+|- |...|+.+-||..+|| -=||+.|||.. ..|.|.||||.|.
T Consensus 223 ~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVGL~--~~PkgkWyC~~C~ 266 (274)
T KOG1973|consen 223 ICN-QVSYGKMIGCDNPGCPIEWFHFTCVGLK--TKPKGKWYCPRCK 266 (274)
T ss_pred Eec-ccccccccccCCCCCCcceEEEeccccc--cCCCCcccchhhh
Confidence 344 7779999999988899 78999999987 6799999999996
No 10
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.59 E-value=8.6e-05 Score=77.72 Aligned_cols=55 Identities=24% Similarity=0.359 Sum_probs=46.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750 729 PQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 792 (798)
Q Consensus 729 p~~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K 792 (798)
.+...+|.+||+||.+.|+..|++|| .++|+.|... +..+||.-+.+++|.|..+
T Consensus 19 ~K~glKRg~WT~EEDe~L~~lV~kyG-----~~nW~~IAk~----~g~gRT~KQCReRW~N~L~ 73 (249)
T PLN03212 19 TKMGMKRGPWTVEEDEILVSFIKKEG-----EGRWRSLPKR----AGLLRCGKSCRLRWMNYLR 73 (249)
T ss_pred ccCCCcCCCCCHHHHHHHHHHHHHhC-----cccHHHHHHh----hhcCCCcchHHHHHHHhhc
Confidence 34456678999999999999999999 6899999864 2258999999999998753
No 11
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.53 E-value=6.8e-05 Score=78.47 Aligned_cols=51 Identities=22% Similarity=0.361 Sum_probs=44.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750 733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 794 (798)
Q Consensus 733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks 794 (798)
-++.+||.||++.|++.|.+|| .+|+.|.. |+++||..++|.+|.++.++.
T Consensus 76 I~kgpWT~EED~lLlel~~~~G------nKWs~IAk-----~LpGRTDnqIKNRWns~LrK~ 126 (249)
T PLN03212 76 VKRGGITSDEEDLILRLHRLLG------NRWSLIAG-----RIPGRTDNEIKNYWNTHLRKK 126 (249)
T ss_pred cccCCCChHHHHHHHHHHHhcc------ccHHHHHh-----hcCCCCHHHHHHHHHHHHhHH
Confidence 3567999999999999999999 58999997 347999999999999877664
No 12
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.40 E-value=7.6e-05 Score=73.09 Aligned_cols=34 Identities=32% Similarity=0.612 Sum_probs=29.4
Q ss_pred cccccccCCCCccCCCCCccCccccccchHHHHH
Q 003750 447 AVHENCLGFPVKFDEKGNFHCPFCAYTLSISEYL 480 (798)
Q Consensus 447 ayH~~Clg~~~~~~peGdW~CP~C~y~ka~~~~~ 480 (798)
.||..||.||++.+|+|+|+||.|..++....+.
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~~~~ 34 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSGQSAM 34 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCCCccc
Confidence 4999999999999999999999999776655543
No 13
>PLN03091 hypothetical protein; Provisional
Probab=97.37 E-value=0.00025 Score=79.24 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=45.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750 731 LRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 793 (798)
Q Consensus 731 ~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk 793 (798)
.+.++.+||.||++.|+..|++|| .++|+.|... +..+||.-+.++||.|...-
T Consensus 10 qklrKg~WTpEEDe~L~~~V~kyG-----~~nWs~IAk~----~g~gRT~KQCRERW~NyLdP 63 (459)
T PLN03091 10 QKLRKGLWSPEEDEKLLRHITKYG-----HGCWSSVPKQ----AGLQRCGKSCRLRWINYLRP 63 (459)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhC-----cCCHHHHhhh----hccCcCcchHhHHHHhccCC
Confidence 345667899999999999999999 6899999864 22589999999999986643
No 14
>PLN03091 hypothetical protein; Provisional
Probab=97.36 E-value=0.00014 Score=81.20 Aligned_cols=50 Identities=22% Similarity=0.438 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 794 (798)
Q Consensus 734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks 794 (798)
++.+||.||++.|++.+++|| .+|++|.. |+++||..++|.+|+.+.|+.
T Consensus 66 kKgpWT~EED~lLLeL~k~~G------nKWskIAk-----~LPGRTDnqIKNRWnslLKKk 115 (459)
T PLN03091 66 KRGTFSQQEENLIIELHAVLG------NRWSQIAA-----QLPGRTDNEIKNLWNSCLKKK 115 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhC------cchHHHHH-----hcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999999 59999997 347999999999999877653
No 15
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=97.22 E-value=0.00023 Score=72.56 Aligned_cols=61 Identities=26% Similarity=0.399 Sum_probs=54.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750 731 LRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 794 (798)
Q Consensus 731 ~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks 794 (798)
.-..+.+||.+|++.|..+.....|. ...+.+||..++.+|...||+-.|.+.||.|.++.
T Consensus 69 ~iq~kalfS~~EE~lL~~v~s~~~p~---le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~ 129 (199)
T PF13325_consen 69 AIQSKALFSKEEEQLLGTVASSSQPS---LETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYH 129 (199)
T ss_pred cccccCCCCHHHHHHHHhhhhccCCc---HHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhc
Confidence 34577899999999999988877653 78999999999999999999999999999998764
No 16
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=96.98 E-value=0.00033 Score=74.53 Aligned_cols=51 Identities=33% Similarity=0.773 Sum_probs=43.6
Q ss_pred CCCc--ccccccccCC---CCcEEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750 419 SGWT--EQNLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA 471 (798)
Q Consensus 419 s~~~--~~d~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~ 471 (798)
-.|. +=-+|.+|+. +-|||.|| .|-+.||--||.||...+|+|.|.|-.|.
T Consensus 274 yrwqcieck~csicgtsenddqllfcd--dcdrgyhmyclsppm~eppegswsc~KOG 329 (336)
T KOG1244|consen 274 YRWQCIECKYCSICGTSENDDQLLFCD--DCDRGYHMYCLSPPMVEPPEGSWSCHLCL 329 (336)
T ss_pred heeeeeecceeccccCcCCCceeEeec--ccCCceeeEecCCCcCCCCCCchhHHHHH
Confidence 3564 3346778875 67899999 99999999999999999999999999993
No 17
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=96.82 E-value=0.00075 Score=81.92 Aligned_cols=55 Identities=29% Similarity=0.665 Sum_probs=46.8
Q ss_pred CCCcccccccccCCC-Cc----EEecCCCCCcccccccccCCCCccCCCCCccCccccccchHH
Q 003750 419 SGWTEQNLCVKCNKD-GQ----LLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSIS 477 (798)
Q Consensus 419 s~~~~~d~C~~C~~~-Gq----LLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ka~~ 477 (798)
++...+..|.+|.++ .+ +|.|| +|-++||-.|.| ..++|+|.|+|-.|-++.+-.
T Consensus 214 ~~~~~D~~C~iC~~~~~~n~n~ivfCD--~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~~~ 273 (1051)
T KOG0955|consen 214 ALLEEDAVCCICLDGECQNSNVIVFCD--GCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQRP 273 (1051)
T ss_pred cccCCCccceeecccccCCCceEEEcC--CCcchhhhhccC--CCCCCCCcEeehhhccCcCcc
Confidence 566778899999874 33 99999 999999999999 558999999999998776543
No 18
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=96.78 E-value=0.0018 Score=54.33 Aligned_cols=45 Identities=27% Similarity=0.417 Sum_probs=37.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccch---hhhhhhcCCCcCCCC-CcchhHHH
Q 003750 733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPW---KKILEFGSSVFFSGR-TAIDLKDK 786 (798)
Q Consensus 733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~W---kkIL~~~~~vF~~~R-T~VDLKDK 786 (798)
++|..||+||-..+++||+.|| .|.| +.|++.+. ..| |..+++-.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G-----~g~~a~pk~I~~~~~----~~~lT~~qV~SH 49 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLG-----GPDWATPKRILELMV----VDGLTRDQVASH 49 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhC-----CCcccchHHHHHHcC----CCCCCHHHHHHH
Confidence 4678999999999999999999 7899 99998644 244 88887743
No 19
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=96.61 E-value=0.00079 Score=76.07 Aligned_cols=48 Identities=29% Similarity=0.805 Sum_probs=40.8
Q ss_pred ccccccccCCCC-----cEEecCCCCCcccccccccCCCCccCCCCCccCccccccc
Q 003750 423 EQNLCVKCNKDG-----QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTL 474 (798)
Q Consensus 423 ~~d~C~~C~~~G-----qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~k 474 (798)
=++.|.+|..-- -++.|| ||-+++|.+|-|-+ |.|+|-|+|-.|.|..
T Consensus 192 ~d~~C~~c~~t~~eN~naiVfCd--gC~i~VHq~CYGI~--f~peG~WlCrkCi~~~ 244 (669)
T COG5141 192 FDDICTKCTSTHNENSNAIVFCD--GCEICVHQSCYGIQ--FLPEGFWLCRKCIYGE 244 (669)
T ss_pred hhhhhHhccccccCCcceEEEec--Ccchhhhhhcccce--ecCcchhhhhhhcccc
Confidence 356788887643 399999 99999999999965 8999999999998763
No 20
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.51 E-value=0.0012 Score=69.73 Aligned_cols=41 Identities=32% Similarity=0.849 Sum_probs=35.5
Q ss_pred ccCC--CCcEEecCCCCCccc-ccccccCCCCccCCCCCccCcccc
Q 003750 429 KCNK--DGQLLSCSSSTCPLA-VHENCLGFPVKFDEKGNFHCPFCA 471 (798)
Q Consensus 429 ~C~~--~GqLLcCD~~gCP~a-yH~~Clg~~~~~~peGdW~CP~C~ 471 (798)
.|.. =|+.+-||.-.|++- ||..|+|.. -+|+|-||||.|.
T Consensus 225 fCqqvSyGqMVaCDn~nCkrEWFH~~CVGLk--~pPKG~WYC~eCk 268 (271)
T COG5034 225 FCQQVSYGQMVACDNANCKREWFHLECVGLK--EPPKGKWYCPECK 268 (271)
T ss_pred EecccccccceecCCCCCchhheeccccccC--CCCCCcEeCHHhH
Confidence 4554 499999999999985 899999976 4799999999995
No 21
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.44 E-value=0.0014 Score=77.21 Aligned_cols=50 Identities=24% Similarity=0.496 Sum_probs=42.5
Q ss_pred CcccccccccCCCC---cEEecCCCCCccc-ccccccCCCCccCCCCCccCccccc
Q 003750 421 WTEQNLCVKCNKDG---QLLSCSSSTCPLA-VHENCLGFPVKFDEKGNFHCPFCAY 472 (798)
Q Consensus 421 ~~~~d~C~~C~~~G---qLLcCD~~gCP~a-yH~~Clg~~~~~~peGdW~CP~C~y 472 (798)
..+.--|..|...- -||.|| +|-.+ ||.-||.+++-..|-|.|||+.|..
T Consensus 212 ~~E~~~C~IC~~~DpEdVLLLCD--sCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 212 SQEEVKCDICTVHDPEDVLLLCD--SCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred ccccccceeeccCChHHhheeec--ccccceeeccccCcccccccccceecCcchh
Confidence 34555688998743 399999 99999 9999999998888999999999973
No 22
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=96.24 E-value=0.00077 Score=81.51 Aligned_cols=55 Identities=22% Similarity=0.148 Sum_probs=48.9
Q ss_pred CCCcccccccccCCCCcEEecCCCCCcccccc-cccCC--CCccCCCCCccCccccccc
Q 003750 419 SGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHE-NCLGF--PVKFDEKGNFHCPFCAYTL 474 (798)
Q Consensus 419 s~~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~-~Clg~--~~~~~peGdW~CP~C~y~k 474 (798)
-=|...+.|++|+++|.||||+ +.||.+||. +||+. -.+..+.|-|+||.|...+
T Consensus 423 ~ywfi~rrl~Ie~~det~l~yy-sT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rq 480 (1414)
T KOG1473|consen 423 KYWFISRRLRIEGMDETLLWYY-STCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQ 480 (1414)
T ss_pred chhceeeeeEEecCCCcEEEEe-cCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHh
Confidence 4588899999999999999999 449999999 99994 4788999999999998654
No 23
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=96.06 E-value=0.0054 Score=52.20 Aligned_cols=59 Identities=27% Similarity=0.392 Sum_probs=47.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcC-----CC------CCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750 735 KVPWTAKEEEILKKGVQKFAS-----VD------DRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 793 (798)
Q Consensus 735 rr~WT~EEeeaL~eGVqKyGp-----~~------~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk 793 (798)
...||.+|.+.|++-|.+|-. .. ....-|..|...+-.++...||..+||.+|.||...
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~ 71 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK 71 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999821 00 125679999998766666799999999999999754
No 24
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=95.98 E-value=0.0058 Score=62.75 Aligned_cols=49 Identities=24% Similarity=0.457 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 793 (798)
Q Consensus 734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk 793 (798)
+|..||+||++.|+.+-.+||+ +|+.|... ++|||--.+|.-|..-.|+
T Consensus 61 krg~fT~eEe~~Ii~lH~~~GN------rWs~IA~~-----LPGRTDNeIKN~Wnt~lkk 109 (238)
T KOG0048|consen 61 KRGNFSDEEEDLIIKLHALLGN------RWSLIAGR-----LPGRTDNEVKNHWNTHLKK 109 (238)
T ss_pred cCCCCCHHHHHHHHHHHHHHCc------HHHHHHhh-----CCCcCHHHHHHHHHHHHHH
Confidence 5789999999999999999994 79999983 5799999999999765544
No 25
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.94 E-value=0.0019 Score=55.50 Aligned_cols=59 Identities=25% Similarity=0.389 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHHh------hcCCCCCcc--chhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750 735 KVPWTAKEEEILKKGVQK------FASVDDRII--PWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 794 (798)
Q Consensus 735 rr~WT~EEeeaL~eGVqK------yGp~~~~~G--~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks 794 (798)
|..||.+|+.+|+..+.. |++.+...+ .|..|...... +.-.||..++++||.||.+..
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~-~G~~rt~~qc~~Kw~~L~~~Y 67 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAE-HGYNRTPEQCRNKWKNLKKKY 67 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHH-HC----HHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHH
Confidence 568999999999999887 331012222 69999975321 112799999999999998754
No 26
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=95.93 E-value=0.0022 Score=74.87 Aligned_cols=60 Identities=32% Similarity=0.731 Sum_probs=46.8
Q ss_pred ccccCC-CC----cEEecCCCCCcccccccccCCCCccCCCCCccCccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 003750 427 CVKCNK-DG----QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSISEYLEAKKRASVARKELAAFMQ 498 (798)
Q Consensus 427 C~~C~~-~G----qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ka~~~~~EakK~a~~AkkeL~~F~~ 498 (798)
|++|.. .| =|+.||+-+|-+|+|--|.|.. -.|.|.|||-.|. .++.++.-|=+|.=|=+
T Consensus 8 CCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIv--qVPtGpWfCrKCe----------sqeraarvrCeLCP~kd 72 (900)
T KOG0956|consen 8 CCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIV--QVPTGPWFCRKCE----------SQERAARVRCELCPHKD 72 (900)
T ss_pred eeeecCcCCCccCceeeecCCCceeeeehhcceeE--ecCCCchhhhhhh----------hhhhhccceeecccCcc
Confidence 677765 23 3999999999999999999975 4689999999994 55666666767765544
No 27
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=95.73 E-value=0.0037 Score=75.94 Aligned_cols=82 Identities=26% Similarity=0.444 Sum_probs=65.2
Q ss_pred ccccccccchhhhhccccchhhhccCCc----cccCCCcccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCC
Q 003750 388 DAYHNDRIDVAVKKSHFLSSQAALGHDS----LATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKG 463 (798)
Q Consensus 388 d~y~~~~~~~~~~k~~fLsSq~t~~~ds----~~~s~~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peG 463 (798)
++|...-|+--++=-+||+-|--..-+. .+.....=+|.|+.|+..|.||||. .||++||..|+-+|--..|+-
T Consensus 304 ~eY~~~pv~~klkILQ~L~Dq~l~~~s~R~e~~se~~~~~ddhcrf~~d~~~~lc~E--t~prvvhlEcv~hP~~~~~s~ 381 (1414)
T KOG1473|consen 304 DEYPYRPVSNKLKILQFLCDQFLTVNSLRDEIDSEGEIEYDDHCRFCHDLGDLLCCE--TCPRVVHLECVFHPRFAVPSA 381 (1414)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccceeecccccccCcccceeecc--cCCceEEeeecCCccccCCCc
Confidence 5677777777777778888764322221 1124556678999999999999999 999999999999998888999
Q ss_pred CccCcccc
Q 003750 464 NFHCPFCA 471 (798)
Q Consensus 464 dW~CP~C~ 471 (798)
.|-|-.|.
T Consensus 382 ~~e~evc~ 389 (1414)
T KOG1473|consen 382 FWECEVCN 389 (1414)
T ss_pred cchhhhhh
Confidence 99999997
No 28
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=95.02 E-value=0.018 Score=54.70 Aligned_cols=59 Identities=25% Similarity=0.334 Sum_probs=45.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhh-------cCCCcCCCCCcchhHHHHhhhccC
Q 003750 733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEF-------GSSVFFSGRTAIDLKDKWRNMCKG 793 (798)
Q Consensus 733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~-------~~~vF~~~RT~VDLKDKWRNL~Kk 793 (798)
.+++.||++|+..|+-.|.+|| =+..|.|..|+.. -++.|+..||+.+|+.+-..|.+.
T Consensus 47 ~~~k~yseeEDRfLl~~~~~~G--~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~ 112 (118)
T PF09111_consen 47 NKKKVYSEEEDRFLLCMLYKYG--YDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL 112 (118)
T ss_dssp SS-SSS-HHHHHHHHHHHHHHT--TTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCcCcHHHHHHHHHHHHhC--CCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence 4677999999999999999999 2334999999963 356677999999999998887653
No 29
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=94.90 E-value=0.031 Score=57.53 Aligned_cols=49 Identities=18% Similarity=0.365 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750 735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 792 (798)
Q Consensus 735 rr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K 792 (798)
+-+||.||++.|++-|++|| .|+|..|-+... -+|+.-...-+|-|-.+
T Consensus 9 kGpWt~EED~~L~~~V~~~G-----~~~W~~i~k~~g----l~R~GKSCRlRW~NyLr 57 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFG-----KHNGTALPKLAG----LRRCGKSCRLRWTNYLR 57 (238)
T ss_pred CCCCChHHHHHHHHHHHHhC-----CCCcchhhhhcC----CCccchHHHHHhhcccC
Confidence 58999999999999999999 789999998654 28999999999988654
No 30
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=94.88 E-value=0.0067 Score=76.05 Aligned_cols=50 Identities=28% Similarity=0.616 Sum_probs=45.4
Q ss_pred CCcccccccccCCCCc---EEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750 420 GWTEQNLCVKCNKDGQ---LLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA 471 (798)
Q Consensus 420 ~~~~~d~C~~C~~~Gq---LLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~ 471 (798)
.....-+|..|...|+ +|.|+ +|-..||.-|+-+.....|.|+|+||.|.
T Consensus 1104 ~s~~~~~c~~cr~k~~~~~m~lc~--~c~~~~h~~C~rp~~~~~~~~dW~C~~c~ 1156 (1404)
T KOG1245|consen 1104 RSAVNALCKVCRRKKQDEKMLLCD--ECLSGFHLFCLRPALSSVPPGDWMCPSCR 1156 (1404)
T ss_pred cccchhhhhhhhhcccchhhhhhH--hhhhhHHHHhhhhhhccCCcCCccCCccc
Confidence 4456678999998876 79999 99999999999999999999999999997
No 31
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=94.88 E-value=0.0071 Score=46.66 Aligned_cols=34 Identities=32% Similarity=0.786 Sum_probs=18.9
Q ss_pred cEEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750 435 QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA 471 (798)
Q Consensus 435 qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~ 471 (798)
+||.|+ +|-+++|.+|-|..... ...+|+|-.|.
T Consensus 3 ~ll~C~--~C~v~VH~~CYGv~~~~-~~~~W~C~~C~ 36 (36)
T PF13831_consen 3 PLLFCD--NCNVAVHQSCYGVSEVP-DGDDWLCDRCE 36 (36)
T ss_dssp EEEE-S--SS--EEEHHHHT-SS---SS-----HHH-
T ss_pred ceEEeC--CCCCcCChhhCCcccCC-CCCcEECCcCC
Confidence 599999 99999999999998542 23379998873
No 32
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=93.71 E-value=0.058 Score=63.33 Aligned_cols=54 Identities=20% Similarity=0.455 Sum_probs=47.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCCCC
Q 003750 733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSPR 796 (798)
Q Consensus 733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks~k 796 (798)
-++-+||.+|...|+.+|.+|| ..-|.+|... | ++|+-.++.++|-|....+.|
T Consensus 358 ikhg~wt~~ED~~L~~AV~~Yg-----~kdw~k~R~~----v-PnRSdsQcR~RY~nvL~~s~K 411 (939)
T KOG0049|consen 358 VKHGRWTDQEDVLLVCAVSRYG-----AKDWAKVRQA----V-PNRSDSQCRERYTNVLNRSAK 411 (939)
T ss_pred ccCCCCCCHHHHHHHHHHHHhC-----ccchhhHHHh----c-CCccHHHHHHHHHHHHHHhhc
Confidence 4677999999999999999999 7899999974 4 689999999999988776655
No 33
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=93.60 E-value=0.033 Score=65.16 Aligned_cols=44 Identities=27% Similarity=0.697 Sum_probs=37.8
Q ss_pred cccccCCCC---cEEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750 426 LCVKCNKDG---QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA 471 (798)
Q Consensus 426 ~C~~C~~~G---qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~ 471 (798)
.|..|+..| +++.|+ +|-.+||--|+-|+.+.++.|.|+||.|.
T Consensus 70 vCe~c~~~gD~~kf~~Ck--~cDvsyh~yc~~P~~~~v~sg~~~ckk~~ 116 (694)
T KOG4443|consen 70 VCEACGTTGDPKKFLLCK--RCDVSYHCYCQKPPNDKVPSGPWLCKKCT 116 (694)
T ss_pred eeeeccccCCcccccccc--cccccccccccCCccccccCcccccHHHH
Confidence 455555433 599999 99999999999999999999999999986
No 34
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=93.21 E-value=0.035 Score=63.52 Aligned_cols=45 Identities=36% Similarity=0.716 Sum_probs=40.0
Q ss_pred cccccccCCCCc---EEecCCCCCcccccccccCCCCccCCCCC----ccCccc
Q 003750 424 QNLCVKCNKDGQ---LLSCSSSTCPLAVHENCLGFPVKFDEKGN----FHCPFC 470 (798)
Q Consensus 424 ~d~C~~C~~~Gq---LLcCD~~gCP~ayH~~Clg~~~~~~peGd----W~CP~C 470 (798)
.-.|.+|.+.-. |+.|| .|-+.||.-||.||++-.|.-+ |.|-+|
T Consensus 544 ~ysCgiCkks~dQHll~~CD--tC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC 595 (707)
T KOG0957|consen 544 NYSCGICKKSTDQHLLTQCD--TCHLHYHLGCLSPPLTRLPKKNKNFGWQCSEC 595 (707)
T ss_pred ceeeeeeccchhhHHHhhcc--hhhceeeccccCCccccCcccccCcceeeccc
Confidence 356999988654 89999 9999999999999999999776 999999
No 35
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=92.57 E-value=0.12 Score=58.43 Aligned_cols=49 Identities=22% Similarity=0.409 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750 736 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 794 (798)
Q Consensus 736 r~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks 794 (798)
--||.+||-.|++|+++|| .|+|..|.+.- ..||.-+.|+.|.++.-.+
T Consensus 73 ~~WtadEEilLLea~~t~G-----~GNW~dIA~hI-----GtKtkeeck~hy~k~fv~s 121 (438)
T KOG0457|consen 73 PSWTADEEILLLEAAETYG-----FGNWQDIADHI-----GTKTKEECKEHYLKHFVNS 121 (438)
T ss_pred CCCChHHHHHHHHHHHHhC-----CCcHHHHHHHH-----cccchHHHHHHHHHHHhcC
Confidence 3799999999999999999 99999999852 3699999999998875443
No 36
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=92.35 E-value=0.11 Score=60.68 Aligned_cols=50 Identities=40% Similarity=0.650 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCCC
Q 003750 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSP 795 (798)
Q Consensus 734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks~ 795 (798)
.+-.||++|++.|..-|.++| +.|+.|-+. -+|.+.+..|+||+..+.+.
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g------~~W~~Ig~~------lgr~P~~crd~wr~~~~~g~ 432 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHG------NDWKEIGKA------LGRMPMDCRDRWRQYVKCGS 432 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhc------ccHHHHHHH------HccCcHHHHHHHHHhhcccc
Confidence 677999999999999999999 799999973 37999999999999998774
No 37
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=91.61 E-value=0.073 Score=57.69 Aligned_cols=43 Identities=28% Similarity=0.689 Sum_probs=36.6
Q ss_pred ccccccCC---CCcEEecCCCCCcccccccccCCCCccCCCCCccCc-ccc
Q 003750 425 NLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCP-FCA 471 (798)
Q Consensus 425 d~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP-~C~ 471 (798)
.+|+.|++ .-+.|.|| -|-+.||-=|+|.. ..|.|.|.|- ||+
T Consensus 315 ~lC~IC~~P~~E~E~~FCD--~CDRG~HT~CVGL~--~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 315 ELCRICLGPVIESEHLFCD--VCDRGPHTLCVGLQ--DLPRGEWICDMRCR 361 (381)
T ss_pred HhhhccCCcccchheeccc--cccCCCCccccccc--cccCccchhhhHHH
Confidence 57888876 45699999 99999999999976 4799999997 675
No 38
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=91.32 E-value=0.1 Score=52.91 Aligned_cols=43 Identities=33% Similarity=0.794 Sum_probs=34.6
Q ss_pred ccccC------CCCcEEecCCCCCcccccccccCCC------CccCCCCCc--cCcccc
Q 003750 427 CVKCN------KDGQLLSCSSSTCPLAVHENCLGFP------VKFDEKGNF--HCPFCA 471 (798)
Q Consensus 427 C~~C~------~~GqLLcCD~~gCP~ayH~~Clg~~------~~~~peGdW--~CP~C~ 471 (798)
|-.|+ ..|.|+.|- ||..+||..|||+. ++...+++| -|-+|.
T Consensus 2 C~~C~~~g~~~~kG~Lv~CQ--GCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Ci 58 (175)
T PF15446_consen 2 CDTCGYEGDDRNKGPLVYCQ--GCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCI 58 (175)
T ss_pred cccccCCCCCccCCCeEEcC--ccChHHHhhhcCCccccceeeEEEcCCceEEechhhc
Confidence 66674 358899999 99999999999995 456667777 488884
No 39
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=89.54 E-value=0.23 Score=58.55 Aligned_cols=47 Identities=23% Similarity=0.338 Sum_probs=39.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHH
Q 003750 731 LRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKW 787 (798)
Q Consensus 731 ~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKW 787 (798)
.+-|.-+||-.|++.|+..|++|| .|+|.+|.. |+..||.-+|-.+-
T Consensus 408 ~s~K~~rW~l~edeqL~~~V~~YG-----~g~WakcA~-----~Lp~~t~~q~~rrR 454 (939)
T KOG0049|consen 408 RSAKVERWTLVEDEQLLYAVKVYG-----KGNWAKCAM-----LLPKKTSRQLRRRR 454 (939)
T ss_pred HhhccCceeecchHHHHHHHHHHc-----cchHHHHHH-----HccccchhHHHHHH
Confidence 455777999999999999999999 999999996 56788886665443
No 40
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=88.89 E-value=0.32 Score=56.37 Aligned_cols=91 Identities=22% Similarity=0.236 Sum_probs=69.9
Q ss_pred cccccccCCccccccccchhhhhccccchhhhccCC--ccccCCCcccccccccCCCCcEEecCCCCCcccccccccCCC
Q 003750 379 CEEETLSDNDAYHNDRIDVAVKKSHFLSSQAALGHD--SLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFP 456 (798)
Q Consensus 379 ~~~~~ssdsd~y~~~~~~~~~~k~~fLsSq~t~~~d--s~~~s~~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~ 456 (798)
.....-|++++-.-|+..+...+++=+|-|-+..-| ...-+-.+++-+|..|++.|..|.|+ .|-++||..|+-+.
T Consensus 13 ~~q~~as~~~~~a~e~~g~~~p~Sp~~skq~~~~~d~~~~~~~~~N~d~~cfechlpg~vl~c~--vc~Rs~h~~c~sp~ 90 (588)
T KOG3612|consen 13 MSQESASLSVKNATERGGLVAPASPGRSKQLALAFDQKVSRLPSSNIDPFCFECHLPGAVLKCI--VCHRSFHENCQSPD 90 (588)
T ss_pred cchhhhhcchhhhhhhccCCCCCCccccchhhhccCcccccccccCCCcccccccCCcceeeee--hhhccccccccCcc
Confidence 344556777777778888888888888887665444 33334556777999999999999999 99999999999986
Q ss_pred Ccc-CCCCCccCcccc
Q 003750 457 VKF-DEKGNFHCPFCA 471 (798)
Q Consensus 457 ~~~-~peGdW~CP~C~ 471 (798)
... .-+--|.||-|.
T Consensus 91 ~q~r~~s~p~~~p~p~ 106 (588)
T KOG3612|consen 91 PQKRNYSVPSDKPQPY 106 (588)
T ss_pred hhhccccccccCCccc
Confidence 433 235679999996
No 41
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=88.86 E-value=0.17 Score=57.62 Aligned_cols=77 Identities=18% Similarity=0.285 Sum_probs=54.6
Q ss_pred ccccCCCC-----cEEecCCCCCcccccccccCCC----CccCCCCCccCccccccchHHHHHH--HHHHHHHHHHHHHH
Q 003750 427 CVKCNKDG-----QLLSCSSSTCPLAVHENCLGFP----VKFDEKGNFHCPFCAYTLSISEYLE--AKKRASVARKELAA 495 (798)
Q Consensus 427 C~~C~~~G-----qLLcCD~~gCP~ayH~~Clg~~----~~~~peGdW~CP~C~y~ka~~~~~E--akK~a~~AkkeL~~ 495 (798)
|+.|.-+| ++|-|+ +|-.-||.-|.-+. ..-|+.+.|||-.|.+.+......- +-...-+|--.|+.
T Consensus 171 c~vC~~g~~~~~NrmlqC~--~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~r~t~~~~dv~~lal~~~~~ 248 (464)
T KOG4323|consen 171 CSVCYCGGPGAGNRMLQCD--KCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVPRLTLRWADVLHLALYNLKP 248 (464)
T ss_pred eeeeecCCcCccceeeeec--ccccHHHHHhccCCCCHhhccCccceEeehhhccchhhccccccccccccchhhhhhhh
Confidence 99988554 599999 99999999999986 4567899999999998876554432 33344555555555
Q ss_pred Hhhcccchhh
Q 003750 496 FMQMGSVCHQ 505 (798)
Q Consensus 496 F~~~~q~~~~ 505 (798)
++.+.-..+.
T Consensus 249 ~~~~k~~~~~ 258 (464)
T KOG4323|consen 249 MLKKKYFKSL 258 (464)
T ss_pred hhccCCcccH
Confidence 5554443333
No 42
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=87.08 E-value=0.25 Score=42.98 Aligned_cols=46 Identities=30% Similarity=0.619 Sum_probs=36.0
Q ss_pred ccccccCCC-CcEEecCCCCCcccccccccCCCC---ccCCCCCccCccc
Q 003750 425 NLCVKCNKD-GQLLSCSSSTCPLAVHENCLGFPV---KFDEKGNFHCPFC 470 (798)
Q Consensus 425 d~C~~C~~~-GqLLcCD~~gCP~ayH~~Clg~~~---~~~peGdW~CP~C 470 (798)
..|..|+.. |-.+-|...+|..+||..|.-... .+.....+|.-||
T Consensus 37 ~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~~~~~~~~~~~~~~~~~~C 86 (90)
T PF13771_consen 37 LKCSICKKKGGACIGCSHPGCSRSFHVPCARKAGCFIEFDEDNGKFRIFC 86 (90)
T ss_pred CCCcCCCCCCCeEEEEeCCCCCcEEChHHHccCCeEEEEccCCCceEEEC
Confidence 479999999 999999999999999999987753 2332334555555
No 43
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=84.69 E-value=0.86 Score=56.53 Aligned_cols=55 Identities=15% Similarity=0.231 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhh-------cCCCcCCCCCcchhHHHHhhhcc
Q 003750 733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEF-------GSSVFFSGRTAIDLKDKWRNMCK 792 (798)
Q Consensus 733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~-------~~~vF~~~RT~VDLKDKWRNL~K 792 (798)
.+++.||.+|...|+-.+.+|| .|+|..|+.. -++.|+..||+..|+.+-..|.+
T Consensus 924 ~~~~~~~~~~d~~~~~~~~~~g-----~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~ 985 (1033)
T PLN03142 924 NKGKLYNEECDRFMLCMVHKLG-----YGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR 985 (1033)
T ss_pred CCCCcCCHHHHHHHHHHHHHhc-----cchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence 3556899999999999999999 8999999753 35667799999999999988765
No 44
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=84.24 E-value=0.49 Score=56.57 Aligned_cols=50 Identities=26% Similarity=0.710 Sum_probs=41.5
Q ss_pred CCcccccccccCCC-----CcEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750 420 GWTEQNLCVKCNKD-----GQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 420 ~~~~~d~C~~C~~~-----GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
...++-+|-+|-.+ -+++.|| .|-+.+|..|-|.- .+|+|.|.|-.|...
T Consensus 267 e~dedviCDvCrspD~e~~neMVfCd--~Cn~cVHqaCyGIl--e~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 267 EYDEDVICDVCRSPDSEEANEMVFCD--KCNICVHQACYGIL--EVPEGPWLCRTCALG 321 (893)
T ss_pred eccccceeceecCCCccccceeEEec--cchhHHHHhhhcee--ecCCCCeeehhcccc
Confidence 34477889998775 4699999 99999999999975 478899999888753
No 45
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=83.84 E-value=0.79 Score=39.97 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHhh---cCC-CC---CccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750 737 PWTAKEEEILKKGVQKF---ASV-DD---RIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 793 (798)
Q Consensus 737 ~WT~EEeeaL~eGVqKy---Gp~-~~---~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk 793 (798)
.||.+.+++|++.+... |+. +. ....|..|...+...|....|.-+||.||+.|.+.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~ 64 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD 64 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence 59999999999998655 222 11 13458889887666666677889999999998764
No 46
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=82.69 E-value=0.68 Score=54.41 Aligned_cols=48 Identities=27% Similarity=0.644 Sum_probs=38.6
Q ss_pred ccccccccCCCCcEEecCCCCCcccccccccCCCCc-cCCCCCccCccccc
Q 003750 423 EQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVK-FDEKGNFHCPFCAY 472 (798)
Q Consensus 423 ~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~-~~peGdW~CP~C~y 472 (798)
--..|..|..+|.+|||+ .||.++|..|.++... ....+.|-|-.|--
T Consensus 46 ~~ts~~~~~~~gn~~~~~--~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~ 94 (613)
T KOG4299|consen 46 AATSCGICKSGGNLLCCD--HCPASFHLECDKPPLSPDLKGSEINCSRCPK 94 (613)
T ss_pred hhhhcchhhhcCCccccc--cCccccchhccCcccCcccccccccccCCCc
Confidence 377899999999999999 9999999999999743 23346666666653
No 47
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=78.84 E-value=1.5 Score=49.62 Aligned_cols=53 Identities=23% Similarity=0.411 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCC-CcCCCCCcchhHHHH----hhhccCC
Q 003750 736 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSS-VFFSGRTAIDLKDKW----RNMCKGS 794 (798)
Q Consensus 736 r~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~-vF~~~RT~VDLKDKW----RNL~Kks 794 (798)
--||.+|++.|.+--++|- -+|--|.+.|.. -|...||-=|||||| |+|.|.+
T Consensus 131 n~WskeETD~LF~lck~fD------LRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr 188 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFD------LRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKAR 188 (445)
T ss_pred ccccHHHHHHHHHHHHhcC------eeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHcc
Confidence 4599999999999999998 699999998743 355679999999999 5555544
No 48
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=76.63 E-value=1.5 Score=47.20 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHhh----cCCCC-Cccchhhhhhhc-CCCcCCCCCcchhHHHHhhhccCCCC
Q 003750 735 KVPWTAKEEEILKKGVQKF----ASVDD-RIIPWKKILEFG-SSVFFSGRTAIDLKDKWRNMCKGSPR 796 (798)
Q Consensus 735 rr~WT~EEeeaL~eGVqKy----Gp~~~-~~G~WkkIL~~~-~~vF~~~RT~VDLKDKWRNL~Kks~k 796 (798)
..+|+.+|+.+|++...+. . ++. +.-.|..|-... ..-| .||..+.|.||.||.|+..+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~-~~~~k~~~We~va~k~~~~g~--~rs~~qck~K~~nl~k~Yk~ 118 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALR-RGKLKGPLWEEVARKMAELGY--PRSPKQCKAKIENLKKKYKK 118 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-hhhhcccHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHH
Confidence 6899999999999876643 2 011 134599998742 1224 79999999999999987643
No 49
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=76.51 E-value=1.8 Score=39.20 Aligned_cols=34 Identities=29% Similarity=0.609 Sum_probs=29.6
Q ss_pred ccccccccCC-CCcEEecCCCCCcccccccccCCC
Q 003750 423 EQNLCVKCNK-DGQLLSCSSSTCPLAVHENCLGFP 456 (798)
Q Consensus 423 ~~d~C~~C~~-~GqLLcCD~~gCP~ayH~~Clg~~ 456 (798)
....|..|+. .|-++-|...+|..+||..|.-..
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHHHHC
Confidence 4568999999 699999998899999999997654
No 50
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=75.78 E-value=0.47 Score=56.61 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=47.7
Q ss_pred CCCcccccccccCCCCcEEecCCCCCcccccccccCC-CCccCCCCCccCcccc
Q 003750 419 SGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGF-PVKFDEKGNFHCPFCA 471 (798)
Q Consensus 419 s~~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~-~~~~~peGdW~CP~C~ 471 (798)
.+-.++..|-.|-+.+.+|.|. .|++.||..|+-+ |++..+-|.|-||.|+
T Consensus 501 ~e~~~d~~~~~~~~~l~~l~~p--~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q 552 (696)
T KOG0383|consen 501 LEEFHDISCEEQIKKLHLLLCP--HMLRRLKLDVLKPMPLKTELIGRVELSPCQ 552 (696)
T ss_pred hhhcchhhHHHHHHhhccccCc--hhhhhhhhhhccCCCccceeEEEEecCHHH
Confidence 4567889999999999999999 9999999999999 8899999999999996
No 51
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=75.57 E-value=1.6 Score=50.72 Aligned_cols=48 Identities=31% Similarity=0.760 Sum_probs=38.0
Q ss_pred cccccCC-----CCcEEecCCCCCcccccccccCCC-CccCCC-------CCccCccccccch
Q 003750 426 LCVKCNK-----DGQLLSCSSSTCPLAVHENCLGFP-VKFDEK-------GNFHCPFCAYTLS 475 (798)
Q Consensus 426 ~C~~C~~-----~GqLLcCD~~gCP~ayH~~Clg~~-~~~~pe-------GdW~CP~C~y~ka 475 (798)
+|.+|-. -|++|-|| .|-+.+|..|.|.. ...+++ ..|||--|.|.-.
T Consensus 121 iCcVClg~rs~da~ei~qCd--~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs 181 (707)
T KOG0957|consen 121 ICCVCLGQRSVDAGEILQCD--KCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVS 181 (707)
T ss_pred EEEEeecCccccccceeecc--ccCceecccccccccccccCCCCccCCCCchhhhhHhcCCC
Confidence 8999975 47899999 99999999999986 222232 5699988887654
No 52
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=75.37 E-value=2.1 Score=52.06 Aligned_cols=52 Identities=31% Similarity=0.706 Sum_probs=44.2
Q ss_pred CCcccccccccCCCCc--EEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750 420 GWTEQNLCVKCNKDGQ--LLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 420 ~~~~~d~C~~C~~~Gq--LLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
.......|..|.++.. ++.|+ +|--.||..|+.+++...+.|+|.||.|...
T Consensus 151 ~~~~~~~~~~~~k~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 151 EFIDYPQCNTCSKGKEEKLLLCD--SCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred ccccchhhhccccCCCccceecc--cccCcccccccCCCCCcCCcCcccCCccccc
Confidence 3445567899988873 44898 9999999999999999999999999999755
No 53
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=71.56 E-value=1.5 Score=52.37 Aligned_cols=49 Identities=33% Similarity=0.755 Sum_probs=38.6
Q ss_pred ccccccCCCCc--------EEecCCCCCcccccccccCCCCccC-CCCC-----ccCcccccc
Q 003750 425 NLCVKCNKDGQ--------LLSCSSSTCPLAVHENCLGFPVKFD-EKGN-----FHCPFCAYT 473 (798)
Q Consensus 425 d~C~~C~~~Gq--------LLcCD~~gCP~ayH~~Clg~~~~~~-peGd-----W~CP~C~y~ 473 (798)
-.|++|..-|. -.-|...||-.+||..|.-..--+= ++|+ -||-||.|-
T Consensus 118 KtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~H 180 (900)
T KOG0956|consen 118 KTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYH 180 (900)
T ss_pred ceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHH
Confidence 57999998866 7889999999999999988763333 3333 599999764
No 54
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=70.94 E-value=2.1 Score=48.88 Aligned_cols=36 Identities=31% Similarity=0.555 Sum_probs=32.2
Q ss_pred CCcccccccccCCCCcEEecC------CCCCcccccccccCC
Q 003750 420 GWTEQNLCVKCNKDGQLLSCS------SSTCPLAVHENCLGF 455 (798)
Q Consensus 420 ~~~~~d~C~~C~~~GqLLcCD------~~gCP~ayH~~Clg~ 455 (798)
.-.+.+.|.+|..+|.|++|+ .++||-+||..|+-.
T Consensus 85 ~~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~~~~~c~~~ 126 (463)
T KOG1081|consen 85 PKIEPSECFVCFKGGSLVTCKSRIQAPHRKCKPAQLEKCSKR 126 (463)
T ss_pred cCCCcchhccccCCCccceeccccccccccCcCccCcccccC
Confidence 456778999999999999999 889999999999887
No 55
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=68.65 E-value=1.4 Score=52.26 Aligned_cols=72 Identities=21% Similarity=0.417 Sum_probs=46.8
Q ss_pred ccccccccCCCCc-----EEecCCCCCcccccccccCCCCc-cCCCCCccCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 003750 423 EQNLCVKCNKDGQ-----LLSCSSSTCPLAVHENCLGFPVK-FDEKGNFHCPFCAYTLSISEYLEAKKRASVARKELAAF 496 (798)
Q Consensus 423 ~~d~C~~C~~~Gq-----LLcCD~~gCP~ayH~~Clg~~~~-~~peGdW~CP~C~y~ka~~~~~EakK~a~~AkkeL~~F 496 (798)
....|.+|+..|+ ||.|. .|-.-||..|+..-.. .+=.|-|-||.|+.--+..+.. .=++-+.-++...+|
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~--~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~g-D~~kf~~Ck~cDvsy 93 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACS--DCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTG-DPKKFLLCKRCDVSY 93 (694)
T ss_pred hhhhhhhhccccccccCcchhhh--hhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccC-Ccccccccccccccc
Confidence 3456888887766 99999 9999999999996421 1123449999998766655222 223334444444444
Q ss_pred h
Q 003750 497 M 497 (798)
Q Consensus 497 ~ 497 (798)
.
T Consensus 94 h 94 (694)
T KOG4443|consen 94 H 94 (694)
T ss_pred c
Confidence 3
No 56
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=68.29 E-value=4.3 Score=45.21 Aligned_cols=46 Identities=22% Similarity=0.471 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhc
Q 003750 736 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC 791 (798)
Q Consensus 736 r~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~ 791 (798)
-.|+..|+-.|++|.+..| .|+|..|.++- ..|+.-+.|+.|-.|-
T Consensus 64 e~WgadEEllli~~~~TlG-----lGNW~dIadyi-----Gsr~kee~k~HylK~y 109 (432)
T COG5114 64 EGWGADEELLLIECLDTLG-----LGNWEDIADYI-----GSRAKEEIKSHYLKMY 109 (432)
T ss_pred CCcCchHHHHHHHHHHhcC-----CCcHHHHHHHH-----hhhhhHHHHHHHHHHH
Confidence 3799999999999999999 99999999852 3699999999986653
No 57
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=67.41 E-value=6.1 Score=36.46 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCcc---chhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750 735 KVPWTAKEEEILKKGVQKFASVDDRII---PWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 794 (798)
Q Consensus 735 rr~WT~EEeeaL~eGVqKyGp~~~~~G---~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks 794 (798)
.+-||+++|-.|++|+--|-.. .+.. .|....+.-...+...=|..+|.+|-|.|.++.
T Consensus 4 qR~WS~eDEi~iL~gl~~~~~~-~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky 65 (98)
T PF04504_consen 4 QRLWSEEDEIVILQGLIDFRAK-TGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKY 65 (98)
T ss_pred cCCCCchHHHHHHHHHHHHHHh-cCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 4579999999999999988210 0022 444444432222222347788999998888763
No 58
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=66.05 E-value=9 Score=33.36 Aligned_cols=53 Identities=17% Similarity=0.252 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCC-C--CccchhhhhhhcCCCcCCCCCcchhHHHHhhhc
Q 003750 735 KVPWTAKEEEILKKGVQKFASVD-D--RIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC 791 (798)
Q Consensus 735 rr~WT~EEeeaL~eGVqKyGp~~-~--~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~ 791 (798)
|.++|.+|+.+|++=|.++.+.| . +.--|+.+-+.+. ..+|--.++|+|+.-.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~----t~HtwQSwR~Ry~K~L 57 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHP----TRHTWQSWRDRYLKHL 57 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-S----SS--SHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC----CCCCHHHHHHHHHHHH
Confidence 67899999999999998775433 2 2334777766554 4899999999995433
No 59
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=62.53 E-value=8.8 Score=44.81 Aligned_cols=48 Identities=15% Similarity=0.353 Sum_probs=37.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhh
Q 003750 732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNM 790 (798)
Q Consensus 732 RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL 790 (798)
-.-+..||.+|+-.|++||++|| -.|.+|-..= ..||.=|-=.|+..|
T Consensus 250 ~~~~~~WT~qE~lLLLE~ie~y~------ddW~kVa~hV-----g~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 250 ESARPNWTEQETLLLLEAIEMYG------DDWNKVADHV-----GTKSQEQCILKFLRL 297 (506)
T ss_pred ccCCCCccHHHHHHHHHHHHHhc------ccHHHHHhcc-----CCCCHHHHHHHHHhc
Confidence 34577999999999999999999 5899999642 367776666666554
No 60
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=59.92 E-value=3.2 Score=48.27 Aligned_cols=50 Identities=32% Similarity=0.577 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750 733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 794 (798)
Q Consensus 733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks 794 (798)
+.+..||.+|+..|..-|.+.| +.|+.|-.. -+|-+.|+-|+||+..+..
T Consensus 289 ~~~~~wt~e~~~eL~~~~~~~~------~~w~~ig~~------~~rmp~~crd~wr~~~~~g 338 (512)
T COG5147 289 EQRGKWTKEEEQELAKLVVEHG------GSWTEIGKL------LGRMPNDCRDRWRDYVKCG 338 (512)
T ss_pred hhhccCcccccccccccccccc------chhhHhhhh------hccCcHHHHHHHhhhcccc
Confidence 4677999999999999999999 899999862 3799999999999998874
No 61
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=59.08 E-value=6.9 Score=45.39 Aligned_cols=30 Identities=20% Similarity=0.582 Sum_probs=26.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhh
Q 003750 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEF 769 (798)
Q Consensus 734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~ 769 (798)
..+.||.+|.-.|++||+.|| -.|.+|...
T Consensus 278 ~dk~WS~qE~~LLLEGIe~yg------DdW~kVA~H 307 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYG------DDWDKVARH 307 (531)
T ss_pred ccccccHHHHHHHHHHHHHhh------hhHHHHHHH
Confidence 456999999999999999999 589998763
No 62
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=54.69 E-value=1.7 Score=37.70 Aligned_cols=48 Identities=27% Similarity=0.559 Sum_probs=19.3
Q ss_pred ccccccCC----CCcE--EecCCCCCcccccccccCCC--------CccCCCCCccCcccccc
Q 003750 425 NLCVKCNK----DGQL--LSCSSSTCPLAVHENCLGFP--------VKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 425 d~C~~C~~----~GqL--LcCD~~gCP~ayH~~Clg~~--------~~~~peGdW~CP~C~y~ 473 (798)
..|.+|.. +|++ +.|+...|...||..||-.- ..|.+ -.+-||+|.-.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~-~~G~CP~C~~~ 64 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIP-IFGECPYCSSP 64 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT---EEE-TTT-SE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecc-cccCCcCCCCe
Confidence 45777764 3444 89999999999999999652 12222 23459999744
No 63
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=54.37 E-value=8.1 Score=45.32 Aligned_cols=45 Identities=31% Similarity=0.589 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHh
Q 003750 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWR 788 (798)
Q Consensus 734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWR 788 (798)
+-.-|+..|++.|..+|.||| ...|+.|...| +.-|.-+.|-+|-
T Consensus 6 kggvwrntEdeilkaav~kyg-----~nqws~i~sll-----~~kt~rqC~~rw~ 50 (617)
T KOG0050|consen 6 KGGVWRNTEDEVLKAAVMKYG-----KNQWSRIASLL-----NRKTARQCKARWE 50 (617)
T ss_pred ecceecccHHHHHHHHHHHcc-----hHHHHHHHHHH-----hhcchhHHHHHHH
Confidence 345799999999999999999 89999999754 3577888888884
No 64
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=47.00 E-value=14 Score=37.75 Aligned_cols=36 Identities=33% Similarity=0.878 Sum_probs=28.0
Q ss_pred ccccccCCCC--------cEEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750 425 NLCVKCNKDG--------QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA 471 (798)
Q Consensus 425 d~C~~C~~~G--------qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~ 471 (798)
.+|..|+.++ ...-|. .|-.+||.+|.... -||.|.
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~--~C~~v~H~~C~~~~---------~CpkC~ 196 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCP--KCKSVFHKSCFRKK---------SCPKCA 196 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCC--cCccccchhhcCCC---------CCCCcH
Confidence 4677777653 357899 99999999999841 299996
No 65
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=44.59 E-value=22 Score=42.52 Aligned_cols=58 Identities=26% Similarity=0.497 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHH-------hh-----------cCCC--CCccchhhhhhhcCCCcCCCCCcchhHHHHhhhc
Q 003750 732 RRKKVPWTAKEEEILKKGVQ-------KF-----------ASVD--DRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC 791 (798)
Q Consensus 732 RRkrr~WT~EEeeaL~eGVq-------Ky-----------Gp~~--~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~ 791 (798)
.+++.+||.||++-|+..|+ .| -|.+ +...+|..|-+. ...|+.++-+-||-.|.
T Consensus 433 ~~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~-----~~TR~~~qCr~Kw~kl~ 507 (607)
T KOG0051|consen 433 KRNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEM-----LGTRSRIQCRYKWYKLT 507 (607)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHh-----hcCCCcchHHHHHHHHH
Confidence 37889999999999999996 33 2211 146799999983 25899999999998887
Q ss_pred cCC
Q 003750 792 KGS 794 (798)
Q Consensus 792 Kks 794 (798)
+..
T Consensus 508 ~~~ 510 (607)
T KOG0051|consen 508 TSP 510 (607)
T ss_pred hhH
Confidence 653
No 66
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=40.82 E-value=16 Score=31.30 Aligned_cols=28 Identities=25% Similarity=0.741 Sum_probs=24.5
Q ss_pred ccccccCC----CCcEEecCCCCCcccccccccC
Q 003750 425 NLCVKCNK----DGQLLSCSSSTCPLAVHENCLG 454 (798)
Q Consensus 425 d~C~~C~~----~GqLLcCD~~gCP~ayH~~Clg 454 (798)
-.|..|++ ++.++.|. .|-..||..|-.
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp--~CgapyHR~C~~ 37 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCP--ECGAPYHRDCWE 37 (54)
T ss_pred ccChhhCCcccCCCCEEECC--CCCCcccHHHHh
Confidence 46889986 78899999 999999999973
No 67
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=40.50 E-value=13 Score=41.03 Aligned_cols=81 Identities=15% Similarity=0.220 Sum_probs=49.7
Q ss_pred cCCccccccccchhhhhccccchhhhccCCccccCCCcccccccccCCCC---------cEEecCCCCCcccccccccCC
Q 003750 385 SDNDAYHNDRIDVAVKKSHFLSSQAALGHDSLATSGWTEQNLCVKCNKDG---------QLLSCSSSTCPLAVHENCLGF 455 (798)
Q Consensus 385 sdsd~y~~~~~~~~~~k~~fLsSq~t~~~ds~~~s~~~~~d~C~~C~~~G---------qLLcCD~~gCP~ayH~~Clg~ 455 (798)
+.-+.+.|+-.+.+.-.-.-.+--. |++....-...++|-.|-++- .|+||. .|..+||..|+.-
T Consensus 223 ~~~~s~~~~~~~~A~~~RK~~~~~~----~~~K~i~~~~~~~~~~~~~~~~~~~~~r~~S~I~C~--~C~~~~HP~Ci~M 296 (381)
T KOG1512|consen 223 KEMEAIKNDSVKLAELRRKAVQNAV----DFNKDIQNQRRNERKHFWDIQTNIIQSRRNSWIVCK--PCATRPHPYCVAM 296 (381)
T ss_pred hhhhhhccchhhhhhcchhhccchh----hhcccccCcchhhhhhhhcchhhhhhhhhccceeec--ccccCCCCcchhc
Confidence 3445566666665543322122111 222233335667888886543 399999 9999999999987
Q ss_pred CC---ccCCCCCccCcccc
Q 003750 456 PV---KFDEKGNFHCPFCA 471 (798)
Q Consensus 456 ~~---~~~peGdW~CP~C~ 471 (798)
+. ...-.=.|-|-.|.
T Consensus 297 ~~elv~~~KTY~W~C~~C~ 315 (381)
T KOG1512|consen 297 IPELVGQYKTYFWKCSSCE 315 (381)
T ss_pred CHHHHhHHhhcchhhcccH
Confidence 63 22234569998885
No 68
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=39.73 E-value=37 Score=38.96 Aligned_cols=54 Identities=20% Similarity=0.300 Sum_probs=44.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCCC
Q 003750 731 LRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSP 795 (798)
Q Consensus 731 ~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks~ 795 (798)
++....+||.+|.+.+..++..+| ..+..|...| +.|..-++|-||-+-.|+.|
T Consensus 361 ~~~~~~~Ws~~e~ekFYKALs~wG------tdF~LIs~lf-----P~R~RkqIKaKfi~Eek~nP 414 (507)
T COG5118 361 KKKGALRWSKKEIEKFYKALSIWG------TDFSLISSLF-----PNRERKQIKAKFIKEEKVNP 414 (507)
T ss_pred CCCCCCcccHHHHHHHHHHHHHhc------chHHHHHHhc-----CchhHHHHHHHHHHHhhhCH
Confidence 345677999999999999999999 6899998754 46888888889987776654
No 69
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=37.16 E-value=29 Score=25.77 Aligned_cols=26 Identities=35% Similarity=0.926 Sum_probs=21.4
Q ss_pred cccccCC--CCc-EEecCCCCCccccccccc
Q 003750 426 LCVKCNK--DGQ-LLSCSSSTCPLAVHENCL 453 (798)
Q Consensus 426 ~C~~C~~--~Gq-LLcCD~~gCP~ayH~~Cl 453 (798)
.|..|+. +|. ..-|+ .|...+|.+|.
T Consensus 2 ~C~~C~~~~~~~~~Y~C~--~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCS--ECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEeC--CCCCeEcCccC
Confidence 4777776 677 89998 99999999995
No 70
>PRK14873 primosome assembly protein PriA; Provisional
Probab=35.33 E-value=26 Score=42.11 Aligned_cols=45 Identities=24% Similarity=0.678 Sum_probs=33.4
Q ss_pred CCcccccccccCCCCcEEecCCCCC--ccccccc-----ccCCCCccCCCCCccCccccc
Q 003750 420 GWTEQNLCVKCNKDGQLLSCSSSTC--PLAVHEN-----CLGFPVKFDEKGNFHCPFCAY 472 (798)
Q Consensus 420 ~~~~~d~C~~C~~~GqLLcCD~~gC--P~ayH~~-----Clg~~~~~~peGdW~CP~C~y 472 (798)
+...--.|..| |..+.|. .| |+.||.. |--+.... -.|.||.|--
T Consensus 379 Gyap~l~C~~C---g~~~~C~--~C~~~L~~h~~~~~l~Ch~CG~~~---~p~~Cp~Cgs 430 (665)
T PRK14873 379 GYVPSLACARC---RTPARCR--HCTGPLGLPSAGGTPRCRWCGRAA---PDWRCPRCGS 430 (665)
T ss_pred CCCCeeEhhhC---cCeeECC--CCCCceeEecCCCeeECCCCcCCC---cCccCCCCcC
Confidence 55566678888 6899998 77 7899964 77666432 4799999963
No 71
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=33.10 E-value=16 Score=26.72 Aligned_cols=13 Identities=31% Similarity=1.129 Sum_probs=11.0
Q ss_pred CCCccCccccccc
Q 003750 462 KGNFHCPFCAYTL 474 (798)
Q Consensus 462 eGdW~CP~C~y~k 474 (798)
+|+|.|+.|.+.-
T Consensus 2 ~g~W~C~~C~~~N 14 (30)
T PF00641_consen 2 EGDWKCPSCTFMN 14 (30)
T ss_dssp SSSEEETTTTEEE
T ss_pred CcCccCCCCcCCc
Confidence 6899999998753
No 72
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=30.37 E-value=25 Score=24.70 Aligned_cols=13 Identities=31% Similarity=1.017 Sum_probs=10.3
Q ss_pred CCccCccccccch
Q 003750 463 GNFHCPFCAYTLS 475 (798)
Q Consensus 463 GdW~CP~C~y~ka 475 (798)
|+|.|+.|.+...
T Consensus 1 g~W~C~~C~~~N~ 13 (26)
T smart00547 1 GDWECPACTFLNF 13 (26)
T ss_pred CcccCCCCCCcCh
Confidence 7999999976543
No 73
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.76 E-value=27 Score=39.29 Aligned_cols=42 Identities=26% Similarity=0.639 Sum_probs=30.3
Q ss_pred ccccccCC---CCcEEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750 425 NLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA 471 (798)
Q Consensus 425 d~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~ 471 (798)
+.|..|-. .|..|.== -|--.||.+|+.+-.. .=.-+||.|.
T Consensus 230 ~~CaIClEdY~~GdklRiL--PC~H~FH~~CIDpWL~---~~r~~CPvCK 274 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRIL--PCSHKFHVNCIDPWLT---QTRTFCPVCK 274 (348)
T ss_pred ceEEEeecccccCCeeeEe--cCCCchhhccchhhHh---hcCccCCCCC
Confidence 68999976 46533333 6669999999998752 1145899996
No 74
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=28.44 E-value=24 Score=25.89 Aligned_cols=26 Identities=35% Similarity=0.816 Sum_probs=12.2
Q ss_pred cccccCCCC---cEEecCCCCCccccccccc
Q 003750 426 LCVKCNKDG---QLLSCSSSTCPLAVHENCL 453 (798)
Q Consensus 426 ~C~~C~~~G---qLLcCD~~gCP~ayH~~Cl 453 (798)
.|..|+..+ -.+.|. .|-..+|.+|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~--~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCS--ECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-T--TT-----HHHH
T ss_pred cCCcCCCcCCCCceEECc--cCCCccChhcC
Confidence 478888855 489999 99999999984
No 75
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=27.95 E-value=38 Score=39.92 Aligned_cols=47 Identities=28% Similarity=0.472 Sum_probs=40.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHH
Q 003750 731 LRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKW 787 (798)
Q Consensus 731 ~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKW 787 (798)
..++...|+..|.+.|..+|++|| ..+|..|...|. .||.=|-+-+|
T Consensus 16 ~~~k~gsw~~~EDe~l~~~vk~l~-----~nnws~vas~~~-----~~~~kq~~~rw 62 (512)
T COG5147 16 TKRKGGSWKRTEDEDLKALVKKLG-----PNNWSKVASLLI-----SSTGKQSSNRW 62 (512)
T ss_pred ceecCCCCCCcchhHHHHHHhhcc-----cccHHHHHHHhc-----ccccccccchh
Confidence 345666999999999999999999 467999997654 38999999888
No 76
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=26.63 E-value=20 Score=42.71 Aligned_cols=27 Identities=37% Similarity=0.789 Sum_probs=21.9
Q ss_pred EecCCCCCcccccccccCCCCccCCCCCccCccccc
Q 003750 437 LSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAY 472 (798)
Q Consensus 437 LcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y 472 (798)
--|+ +|=.+||..|+.....- ||.|.+
T Consensus 532 ~rC~--~C~avfH~~C~~r~s~~-------CPrC~R 558 (580)
T KOG1829|consen 532 RRCS--TCLAVFHKKCLRRKSPC-------CPRCER 558 (580)
T ss_pred eeHH--HHHHHHHHHHHhccCCC-------CCchHH
Confidence 4588 99999999999976432 999974
No 77
>PLN03162 golden-2 like transcription factor; Provisional
Probab=25.90 E-value=1.4e+02 Score=34.51 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=43.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhH---HHHhhhccC
Q 003750 728 IPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLK---DKWRNMCKG 793 (798)
Q Consensus 728 ~p~~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLK---DKWRNL~Kk 793 (798)
.+.++|.|.+||.|=-+.++.+|.+.|. + .-.=|.||+.-. + .+=|.-++| .|||...|+
T Consensus 230 ~~g~KKpRLrWTpELH~rFVeAV~qLG~--d-KATPK~ILelMn--V-~GLTRenVKSHLQKYRl~rk~ 292 (526)
T PLN03162 230 APGKKKAKVDWTPELHRRFVHAVEQLGV--E-KAFPSRILELMG--V-QCLTRHNIASHLQKYRSHRRH 292 (526)
T ss_pred CCCCCCCcccCCHHHHHHHHHHHHHhCc--C-ccchHHHHHHcC--C-CCcCHHHHHHHHHHHHHhccc
Confidence 3456788999999999999999999993 2 344577887543 1 345555555 788887764
No 78
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=24.62 E-value=1.3e+02 Score=29.84 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=41.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcC-CCcCCCCCcchhHHHHhhhcc
Q 003750 733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGS-SVFFSGRTAIDLKDKWRNMCK 792 (798)
Q Consensus 733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~-~vF~~~RT~VDLKDKWRNL~K 792 (798)
++..+=|..|++.|...|+||| -.+..+..+-. +.| -.|.-+|+.|.+...+
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhG------dDy~aMarD~KLN~~--Q~T~~qlrrki~~~k~ 164 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHG------DDYKAMARDRKLNYM--QHTPGQLRRKIRKYKK 164 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHC------ccHHHHhccCCCCcc--cCCHHHHHHHHHHhcC
Confidence 4667889999999999999999 36777776655 556 4899999998877643
No 79
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=24.58 E-value=11 Score=29.13 Aligned_cols=25 Identities=32% Similarity=0.697 Sum_probs=18.3
Q ss_pred CCcccccccccCCCCccCCCCCccCcccc
Q 003750 443 TCPLAVHENCLGFPVKFDEKGNFHCPFCA 471 (798)
Q Consensus 443 gCP~ayH~~Clg~~~~~~peGdW~CP~C~ 471 (798)
.|--.||..|+..-... ...||.|+
T Consensus 20 ~C~H~fh~~Ci~~~~~~----~~~CP~CR 44 (44)
T PF13639_consen 20 PCGHVFHRSCIKEWLKR----NNSCPVCR 44 (44)
T ss_dssp TTSEEEEHHHHHHHHHH----SSB-TTTH
T ss_pred cCCCeeCHHHHHHHHHh----CCcCCccC
Confidence 58899999999875432 34999994
No 80
>PHA02929 N1R/p28-like protein; Provisional
Probab=23.83 E-value=19 Score=38.45 Aligned_cols=64 Identities=17% Similarity=0.310 Sum_probs=39.4
Q ss_pred ccchhhhccCCccccCCCcccccccccCCCCc--------EEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750 404 FLSSQAALGHDSLATSGWTEQNLCVKCNKDGQ--------LLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 404 fLsSq~t~~~ds~~~s~~~~~d~C~~C~~~Gq--------LLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
|+.+.-++-++.....+...+..|..|...-. +..= ..|--.||..|+..-.. ..--||.|+..
T Consensus 154 ~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl--~~C~H~FC~~CI~~Wl~----~~~tCPlCR~~ 225 (238)
T PHA02929 154 FLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGIL--SNCNHVFCIECIDIWKK----EKNTCPVCRTP 225 (238)
T ss_pred HHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceec--CCCCCcccHHHHHHHHh----cCCCCCCCCCE
Confidence 55555555555433334455689999987521 0111 26779999999976432 23479999854
No 81
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.75 E-value=45 Score=41.48 Aligned_cols=45 Identities=22% Similarity=0.427 Sum_probs=32.0
Q ss_pred CCcccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCccccc
Q 003750 420 GWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAY 472 (798)
Q Consensus 420 ~~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y 472 (798)
-..+...|..|+..=+|=.=- --|--+||-.|++ ++..-||.|..
T Consensus 836 ~i~q~skCs~C~~~LdlP~Vh-F~CgHsyHqhC~e-------~~~~~CP~C~~ 880 (933)
T KOG2114|consen 836 QIFQVSKCSACEGTLDLPFVH-FLCGHSYHQHCLE-------DKEDKCPKCLP 880 (933)
T ss_pred ceeeeeeecccCCccccceee-eecccHHHHHhhc-------cCcccCCccch
Confidence 345556899998655532111 2466899999999 68999999974
No 82
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=22.68 E-value=45 Score=27.00 Aligned_cols=19 Identities=37% Similarity=0.945 Sum_probs=14.2
Q ss_pred cccCCCCccCCCCCccCccc
Q 003750 451 NCLGFPVKFDEKGNFHCPFC 470 (798)
Q Consensus 451 ~Clg~~~~~~peGdW~CP~C 470 (798)
.| +.|..-+..|.-|||.|
T Consensus 22 ~C-~~PL~~~k~g~~~Cv~C 40 (41)
T PF06677_consen 22 DC-GTPLMRDKDGKIYCVSC 40 (41)
T ss_pred CC-CCeeEEecCCCEECCCC
Confidence 46 55554457899999999
No 83
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=22.06 E-value=47 Score=37.06 Aligned_cols=36 Identities=19% Similarity=0.432 Sum_probs=30.8
Q ss_pred CcEEecCCCCCcccccccc--cCCC-CccCCCCCccCcccc
Q 003750 434 GQLLSCSSSTCPLAVHENC--LGFP-VKFDEKGNFHCPFCA 471 (798)
Q Consensus 434 GqLLcCD~~gCP~ayH~~C--lg~~-~~~~peGdW~CP~C~ 471 (798)
+--.-|+ +|...||..| +|.+ ...++.-.|+|..|-
T Consensus 73 ~~~~~cd--~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~ 111 (345)
T KOG1632|consen 73 DLMEQCD--LCEDWYHGECWEVGTAEKEAPKEDPKVCDECK 111 (345)
T ss_pred hhhhccc--cccccccccccccCchhhcCCccccccccccc
Confidence 3567799 9999999999 9997 466778999999995
No 84
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=21.45 E-value=25 Score=25.45 Aligned_cols=41 Identities=22% Similarity=0.529 Sum_probs=25.7
Q ss_pred ccccCCCC-cEEecCCCCCcccccccccCCCCccCCCCCccCccccc
Q 003750 427 CVKCNKDG-QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAY 472 (798)
Q Consensus 427 C~~C~~~G-qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y 472 (798)
|..|...- ..+.-. .|--.||..|+..-.. .+...||.|..
T Consensus 2 C~iC~~~~~~~~~~~--~C~H~~c~~C~~~~~~---~~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEFREPVVLL--PCGHVFCRSCIDKWLK---SGKNTCPLCRT 43 (45)
T ss_pred CCcCchhhhCceEec--CCCChhcHHHHHHHHH---hCcCCCCCCCC
Confidence 55555443 233333 5778899999875432 26788999963
No 85
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=21.15 E-value=26 Score=38.64 Aligned_cols=50 Identities=30% Similarity=0.637 Sum_probs=38.8
Q ss_pred cccccccccCCCC----------cEEecCCCCCcccccccccCCCCc---cCCCCCccCcccccc
Q 003750 422 TEQNLCVKCNKDG----------QLLSCSSSTCPLAVHENCLGFPVK---FDEKGNFHCPFCAYT 473 (798)
Q Consensus 422 ~~~d~C~~C~~~G----------qLLcCD~~gCP~ayH~~Clg~~~~---~~peGdW~CP~C~y~ 473 (798)
....+|-.|-.+- +|+-|+ .|-++=|.+||.+.+. ..--=.|.|-+|.|=
T Consensus 222 ~Pn~YCDFclgdsr~nkkt~~peelvscs--dcgrsghpsclqft~nm~~avk~yrwqcieck~c 284 (336)
T KOG1244|consen 222 QPNPYCDFCLGDSRENKKTGMPEELVSCS--DCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYC 284 (336)
T ss_pred cCCcccceeccccccccccCCchhhcchh--hcCCCCCcchhhhhHHHHHHHHhheeeeeeccee
Confidence 4557888886654 499999 9999999999999742 223468999999764
No 86
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=20.82 E-value=1e+02 Score=24.61 Aligned_cols=34 Identities=32% Similarity=0.600 Sum_probs=25.4
Q ss_pred ccccccccCC-----CCcEEecCCCCCcccccccccCCCCc
Q 003750 423 EQNLCVKCNK-----DGQLLSCSSSTCPLAVHENCLGFPVK 458 (798)
Q Consensus 423 ~~d~C~~C~~-----~GqLLcCD~~gCP~ayH~~Clg~~~~ 458 (798)
.-.+|..|++ .++=+.|. .|-+.+|.+|+...+.
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~--~C~~~~H~~C~~~~~~ 48 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCS--WCGLVCHKKCLSKVPP 48 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEET--TTT-EEETTGGCTSSS
T ss_pred CCCCCcccCcccCCCCCCeEEEC--CCCChHhhhhhhhcCC
Confidence 3457888875 56789999 9999999999987643
No 87
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=20.75 E-value=21 Score=24.90 Aligned_cols=39 Identities=26% Similarity=0.558 Sum_probs=22.0
Q ss_pred ccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCccc
Q 003750 427 CVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFC 470 (798)
Q Consensus 427 C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C 470 (798)
|..|.....-+.-- .|--.||..|+..-.. .+..-||.|
T Consensus 1 C~iC~~~~~~~~~~--~C~H~~c~~C~~~~~~---~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVL--PCGHTFCRSCIRKWLK---SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEe--cCCChHHHHHHHHHHH---hCcCCCCCC
Confidence 34454443333333 5667788888764332 355668876
No 88
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=20.28 E-value=42 Score=39.67 Aligned_cols=73 Identities=29% Similarity=0.540 Sum_probs=47.5
Q ss_pred hhhhhccccchhhhccCCcc------ccCCCcccccccccCC-CCcEEecCCCCCcccccccccCCCCccCC-----CCC
Q 003750 397 VAVKKSHFLSSQAALGHDSL------ATSGWTEQNLCVKCNK-DGQLLSCSSSTCPLAVHENCLGFPVKFDE-----KGN 464 (798)
Q Consensus 397 ~~~~k~~fLsSq~t~~~ds~------~~s~~~~~d~C~~C~~-~GqLLcCD~~gCP~ayH~~Clg~~~~~~p-----eGd 464 (798)
+-+.-+++||=-.++.-|.- +.+.|. -.|..|+. +|.-+-|+...|-+|||..|.-..--|+- .|-
T Consensus 272 iCA~~~pelsF~~l~~~dpI~~i~sVs~srwk--l~C~iCk~~~GtcIqCs~~nC~~aYHVtCArrag~f~~~~~s~n~~ 349 (669)
T COG5141 272 ICAMFNPELSFGHLLSKDPIDNIASVSSSRWK--LGCLICKEFGGTCIQCSYFNCTRAYHVTCARRAGYFDLNIYSHNGI 349 (669)
T ss_pred hHHHhcchhccccccccchhhhhcccchhhHh--heeeEEcccCcceeeecccchhhhhhhhhhhhcchhhhhhhccccc
Confidence 33444555555444444431 224454 46999998 89999999999999999999876533332 455
Q ss_pred ccC----cccc
Q 003750 465 FHC----PFCA 471 (798)
Q Consensus 465 W~C----P~C~ 471 (798)
-|| |+|.
T Consensus 350 s~~id~e~~c~ 360 (669)
T COG5141 350 SYCIDHEPLCR 360 (669)
T ss_pred ceeecchhhhc
Confidence 555 5564
Done!