Query 003750
Match_columns 798
No_of_seqs 175 out of 394
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 02:52:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003750.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003750hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x58_A Hypothetical protein 49 99.7 6.9E-18 2.3E-22 141.0 5.8 56 732-795 5-60 (62)
2 2aje_A Telomere repeat-binding 99.6 2.7E-16 9.4E-21 142.5 6.2 60 730-795 8-67 (105)
3 2roh_A RTBP1, telomere binding 99.6 9.1E-16 3.1E-20 142.3 6.3 60 728-793 24-83 (122)
4 2juh_A Telomere binding protei 99.5 3.9E-15 1.3E-19 138.0 6.9 59 729-793 11-69 (121)
5 2ckx_A NGTRF1, telomere bindin 99.5 1.3E-14 4.3E-19 126.6 4.7 53 736-794 1-53 (83)
6 3sjm_A Telomeric repeat-bindin 99.4 2.6E-13 8.9E-18 112.6 5.3 55 732-794 8-62 (64)
7 1xwh_A Autoimmune regulator; P 99.4 1.8E-13 6.2E-18 113.4 2.9 51 422-474 6-56 (66)
8 1mm2_A MI2-beta; PHD, zinc fin 99.4 2.5E-13 8.6E-18 111.4 3.3 52 422-475 7-58 (61)
9 1fp0_A KAP-1 corepressor; PHD 99.4 3.1E-13 1.1E-17 119.4 4.1 53 421-475 22-74 (88)
10 2l5u_A Chromodomain-helicase-D 99.3 5.6E-13 1.9E-17 109.3 4.2 52 420-473 7-58 (61)
11 2puy_A PHD finger protein 21A; 99.3 3.3E-13 1.1E-17 109.7 2.3 48 423-472 4-51 (60)
12 2yql_A PHD finger protein 21A; 99.3 9E-13 3.1E-17 106.0 3.6 49 421-471 6-54 (56)
13 2lri_C Autoimmune regulator; Z 99.3 1.2E-12 4E-17 109.7 3.3 49 423-473 11-59 (66)
14 3o36_A Transcription intermedi 99.3 1.9E-12 6.5E-17 124.1 4.2 49 423-473 3-51 (184)
15 3u5n_A E3 ubiquitin-protein li 99.2 2.9E-12 9.8E-17 125.3 4.2 51 422-474 5-55 (207)
16 1w0t_A Telomeric repeat bindin 99.2 1.2E-11 4.2E-16 97.9 5.5 52 734-793 1-52 (53)
17 1ity_A TRF1; helix-turn-helix, 99.2 1.9E-11 6.6E-16 101.4 6.7 58 729-794 4-61 (69)
18 2ro1_A Transcription intermedi 99.2 8E-12 2.7E-16 121.6 4.0 48 424-473 2-49 (189)
19 2ku3_A Bromodomain-containing 99.2 5.7E-12 2E-16 106.8 2.0 52 419-474 11-67 (71)
20 2lbm_A Transcriptional regulat 99.1 1.2E-11 4E-16 117.4 3.5 63 404-475 50-119 (142)
21 2l43_A N-teminal domain from h 99.1 1E-11 3.5E-16 108.7 2.8 52 419-474 20-76 (88)
22 2yt5_A Metal-response element- 99.1 1.4E-11 4.8E-16 101.0 2.2 52 422-475 4-63 (66)
23 2e6r_A Jumonji/ARID domain-con 99.1 2.7E-11 9.2E-16 106.7 3.8 50 420-471 12-64 (92)
24 1f62_A Transcription factor WS 99.1 2.5E-11 8.4E-16 95.4 2.9 45 426-472 2-49 (51)
25 4gne_A Histone-lysine N-methyl 99.1 5E-11 1.7E-15 108.3 4.9 53 419-473 10-62 (107)
26 1wev_A Riken cDNA 1110020M19; 99.1 2.2E-11 7.4E-16 106.4 1.8 49 423-473 15-72 (88)
27 2e6s_A E3 ubiquitin-protein li 99.0 1.8E-10 6.2E-15 99.0 4.6 46 424-471 26-75 (77)
28 3asl_A E3 ubiquitin-protein li 99.0 2.2E-10 7.4E-15 96.6 4.1 45 426-472 20-68 (70)
29 3shb_A E3 ubiquitin-protein li 98.9 1.1E-09 3.8E-14 94.3 4.1 44 426-471 28-75 (77)
30 3v43_A Histone acetyltransfera 98.8 1.7E-09 5.7E-14 97.4 4.2 44 426-471 63-110 (112)
31 2kwj_A Zinc finger protein DPF 98.8 1.2E-09 4.1E-14 98.8 3.0 50 420-471 52-106 (114)
32 3ask_A E3 ubiquitin-protein li 98.8 1.5E-09 5.2E-14 109.7 3.6 46 424-471 174-223 (226)
33 1wen_A Inhibitor of growth fam 98.8 7E-09 2.4E-13 87.9 5.5 54 418-474 10-66 (71)
34 2ysm_A Myeloid/lymphoid or mix 98.7 4.9E-09 1.7E-13 93.5 4.4 48 422-471 5-55 (111)
35 3ql9_A Transcriptional regulat 98.7 1.3E-09 4.5E-14 102.1 0.1 50 423-474 56-112 (129)
36 1guu_A C-MYB, MYB proto-oncoge 98.7 1.2E-08 4.1E-13 80.1 5.2 49 734-792 2-50 (52)
37 2k16_A Transcription initiatio 98.7 5.8E-09 2E-13 87.5 3.3 50 421-472 15-67 (75)
38 2d9a_A B-MYB, MYB-related prot 98.7 2.5E-08 8.5E-13 80.5 6.2 52 733-794 6-57 (60)
39 3c6w_A P28ING5, inhibitor of g 98.7 5.4E-09 1.8E-13 85.7 2.3 51 420-473 5-58 (59)
40 2ysm_A Myeloid/lymphoid or mix 98.7 9.6E-09 3.3E-13 91.7 4.0 54 419-474 47-105 (111)
41 1gvd_A MYB proto-oncogene prot 98.6 3.4E-08 1.2E-12 77.6 5.6 49 734-792 2-50 (52)
42 2vnf_A ING 4, P29ING4, inhibit 98.6 8.9E-09 3E-13 84.4 2.2 51 420-473 6-59 (60)
43 2lv9_A Histone-lysine N-methyl 98.6 5E-08 1.7E-12 86.6 6.2 47 426-475 32-78 (98)
44 1weu_A Inhibitor of growth fam 98.6 7.2E-08 2.5E-12 85.7 6.3 52 420-474 32-86 (91)
45 2g6q_A Inhibitor of growth pro 98.5 2.3E-08 8E-13 82.7 2.3 51 420-473 7-60 (62)
46 1x41_A Transcriptional adaptor 98.5 8.1E-08 2.8E-12 78.0 5.1 53 733-795 6-58 (60)
47 2dim_A Cell division cycle 5-l 98.5 1.5E-07 5E-12 78.2 6.1 51 733-793 7-57 (70)
48 2elk_A SPCC24B10.08C protein; 98.4 2.1E-07 7.2E-12 75.4 4.3 47 735-791 9-56 (58)
49 2cu7_A KIAA1915 protein; nucle 98.3 1.9E-07 6.4E-12 78.2 3.3 51 733-794 7-57 (72)
50 2llk_A Cyclin-D-binding MYB-li 98.3 3E-07 1E-11 78.6 4.4 49 733-793 21-69 (73)
51 2kwj_A Zinc finger protein DPF 98.3 7.3E-08 2.5E-12 87.2 0.5 46 424-471 1-59 (114)
52 2jmi_A Protein YNG1, ING1 homo 98.3 2.5E-07 8.5E-12 82.1 3.6 50 419-471 21-74 (90)
53 2yum_A ZZZ3 protein, zinc fing 98.3 3.5E-07 1.2E-11 76.7 4.1 57 733-794 6-62 (75)
54 1gv2_A C-MYB, MYB proto-oncoge 98.3 6E-07 2.1E-11 78.9 5.5 50 734-794 55-104 (105)
55 3osg_A MYB21; transcription-DN 98.2 9.2E-07 3.1E-11 80.7 4.6 50 734-794 61-110 (126)
56 1h8a_C AMV V-MYB, MYB transfor 98.2 1.4E-06 4.9E-11 79.2 5.6 50 734-794 78-127 (128)
57 3v43_A Histone acetyltransfera 98.2 3.1E-07 1E-11 82.7 0.9 48 422-471 3-62 (112)
58 1gv2_A C-MYB, MYB proto-oncoge 98.2 1.7E-06 5.9E-11 76.0 5.6 49 734-792 3-51 (105)
59 2yus_A SWI/SNF-related matrix- 98.2 1.5E-06 5.3E-11 74.9 4.7 49 732-791 15-63 (79)
60 2k9n_A MYB24; R2R3 domain, DNA 98.1 6.6E-07 2.3E-11 79.5 2.4 51 734-795 52-102 (107)
61 2cqr_A RSGI RUH-043, DNAJ homo 98.1 3.2E-06 1.1E-10 72.3 5.8 54 733-793 16-69 (73)
62 3zqc_A MYB3; transcription-DNA 98.1 2.8E-06 9.4E-11 77.9 5.3 50 734-794 53-102 (131)
63 2din_A Cell division cycle 5-l 98.1 1.8E-06 6.3E-11 70.9 3.5 47 734-792 8-54 (66)
64 3osg_A MYB21; transcription-DN 98.1 3.5E-06 1.2E-10 76.9 5.7 51 731-792 7-57 (126)
65 1h8a_C AMV V-MYB, MYB transfor 98.1 3.4E-06 1.2E-10 76.8 5.2 50 733-792 25-74 (128)
66 2k9n_A MYB24; R2R3 domain, DNA 98.0 4.3E-06 1.5E-10 74.3 5.0 48 735-792 1-48 (107)
67 1h89_C C-MYB, MYB proto-oncoge 98.0 7.8E-06 2.7E-10 76.8 5.9 51 733-794 108-158 (159)
68 3zqc_A MYB3; transcription-DNA 97.9 1E-05 3.5E-10 74.2 5.6 48 735-792 2-49 (131)
69 1x4i_A Inhibitor of growth pro 97.9 4.9E-06 1.7E-10 70.3 2.4 46 423-471 5-53 (70)
70 2ri7_A Nucleosome-remodeling f 97.8 3.3E-06 1.1E-10 79.9 0.5 49 422-473 6-59 (174)
71 2ltp_A Nuclear receptor corepr 97.0 2.9E-06 1E-10 74.2 0.0 51 733-794 14-64 (89)
72 1h89_C C-MYB, MYB proto-oncoge 97.8 2.6E-05 9E-10 73.2 6.2 50 734-793 57-106 (159)
73 1we9_A PHD finger family prote 97.6 2.1E-05 7.2E-10 64.1 2.4 51 422-474 4-59 (64)
74 2cjj_A Radialis; plant develop 97.5 6.4E-05 2.2E-09 67.0 4.3 51 735-792 8-58 (93)
75 2eqr_A N-COR1, N-COR, nuclear 97.5 0.00015 5.2E-09 59.3 5.8 52 731-793 8-59 (61)
76 1wil_A KIAA1045 protein; ring 97.4 2.8E-05 9.5E-10 69.2 0.0 50 420-471 11-74 (89)
77 1ign_A Protein (RAP1); RAP1,ye 97.3 0.00018 6.1E-09 73.9 5.1 56 733-793 6-61 (246)
78 1wew_A DNA-binding family prot 97.2 0.0002 6.9E-09 61.0 3.6 51 423-474 15-73 (78)
79 3hm5_A DNA methyltransferase 1 97.2 0.00025 8.4E-09 63.6 4.2 51 736-793 31-82 (93)
80 2xb1_A Pygopus homolog 2, B-ce 97.1 0.00012 4E-09 66.0 1.6 52 425-477 4-65 (105)
81 2cqq_A RSGI RUH-037, DNAJ homo 97.1 0.00033 1.1E-08 59.7 3.9 52 734-793 7-58 (72)
82 3o70_A PHD finger protein 13; 97.0 0.00045 1.5E-08 58.0 3.6 49 421-473 16-67 (68)
83 1wee_A PHD finger family prote 96.9 0.00038 1.3E-08 58.3 2.6 47 424-473 16-66 (72)
84 2rsd_A E3 SUMO-protein ligase 96.9 0.00047 1.6E-08 57.4 2.9 49 425-474 11-66 (68)
85 1wep_A PHF8; structural genomi 96.5 0.001 3.6E-08 56.6 2.7 48 423-473 11-63 (79)
86 2vpb_A Hpygo1, pygopus homolog 96.5 0.0005 1.7E-08 57.4 0.2 49 422-471 6-64 (65)
87 1wgx_A KIAA1903 protein; MYB D 96.4 0.0038 1.3E-07 53.8 5.5 54 736-796 9-62 (73)
88 1wem_A Death associated transc 96.4 0.00054 1.8E-08 57.7 0.2 46 425-473 17-70 (76)
89 2kgg_A Histone demethylase jar 96.4 0.00082 2.8E-08 53.3 1.0 44 427-471 5-52 (52)
90 3o7a_A PHD finger protein 13 v 96.2 0.0025 8.7E-08 50.4 2.8 36 433-471 15-50 (52)
91 2iw5_B Protein corest, REST co 96.1 0.005 1.7E-07 62.9 5.4 52 732-794 130-181 (235)
92 3lqh_A Histone-lysine N-methyl 96.0 0.0044 1.5E-07 60.9 4.4 51 425-477 3-67 (183)
93 4b4c_A Chromodomain-helicase-D 96.0 0.0097 3.3E-07 57.7 6.7 53 734-791 133-194 (211)
94 4iej_A DNA methyltransferase 1 95.8 0.0069 2.4E-07 54.5 4.2 50 736-792 31-81 (93)
95 2ebi_A DNA binding protein GT- 95.8 0.0027 9.2E-08 54.4 1.4 61 733-795 2-67 (86)
96 3kv5_D JMJC domain-containing 95.7 0.0017 5.9E-08 71.7 0.1 46 423-471 36-86 (488)
97 3kqi_A GRC5, PHD finger protei 95.7 0.0028 9.4E-08 53.6 1.1 41 429-471 14-59 (75)
98 3a1b_A DNA (cytosine-5)-methyl 95.1 0.0048 1.6E-07 60.0 0.6 77 390-473 49-134 (159)
99 1ofc_X ISWI protein; nuclear p 95.0 0.011 3.7E-07 62.4 3.0 57 734-792 211-274 (304)
100 2yqk_A Arginine-glutamic acid 94.7 0.068 2.3E-06 44.1 6.6 52 733-794 7-58 (63)
101 2pv0_B DNA (cytosine-5)-methyl 93.8 0.0087 3E-07 64.9 -0.8 51 423-473 92-148 (386)
102 3kv4_A PHD finger protein 8; e 93.7 0.0083 2.8E-07 65.9 -1.3 45 427-473 7-56 (447)
103 2crg_A Metastasis associated p 93.5 0.11 3.9E-06 43.7 5.6 49 732-790 5-53 (70)
104 4bbq_A Lysine-specific demethy 93.3 0.019 6.6E-07 51.2 0.7 35 435-471 74-112 (117)
105 2y9y_A Imitation switch protei 93.2 0.043 1.5E-06 59.4 3.3 58 734-793 227-291 (374)
106 1irz_A ARR10-B; helix-turn-hel 92.9 0.14 4.8E-06 43.3 5.3 56 732-793 4-62 (64)
107 1fex_A TRF2-interacting telome 92.8 0.13 4.5E-06 42.2 4.9 54 735-792 2-58 (59)
108 3pur_A Lysine-specific demethy 92.7 0.049 1.7E-06 61.2 2.9 36 434-471 56-92 (528)
109 2xag_B REST corepressor 1; ami 91.9 0.16 5.4E-06 56.6 5.6 51 733-794 378-428 (482)
110 2xb0_X Chromo domain-containin 90.7 0.13 4.6E-06 53.4 3.3 29 736-769 169-197 (270)
111 4gne_A Histone-lysine N-methyl 90.3 0.13 4.5E-06 46.8 2.6 39 426-467 60-98 (107)
112 4b4c_A Chromodomain-helicase-D 89.4 0.32 1.1E-05 47.0 4.7 53 732-790 4-56 (211)
113 4eef_G F-HB80.4, designed hema 88.6 0.19 6.6E-06 43.7 2.3 48 735-789 20-67 (74)
114 4a69_C Nuclear receptor corepr 87.6 0.73 2.5E-05 40.8 5.3 50 732-792 40-89 (94)
115 2ku7_A MLL1 PHD3-CYP33 RRM chi 84.1 0.31 1.1E-05 42.7 1.2 34 436-471 2-42 (140)
116 2lr8_A CAsp8-associated protei 83.6 0.24 8.1E-06 42.8 0.0 57 733-798 12-68 (70)
117 2xb0_X Chromo domain-containin 75.9 3.2 0.00011 43.2 5.6 52 734-791 2-53 (270)
118 2d8s_A Cellular modulator of i 69.5 1.1 3.8E-05 38.2 0.4 54 420-475 11-69 (80)
119 1ign_A Protein (RAP1); RAP1,ye 69.4 4.8 0.00016 41.7 5.1 28 761-793 172-199 (246)
120 2d8v_A Zinc finger FYVE domain 69.1 2.2 7.5E-05 36.6 2.1 31 421-471 5-35 (67)
121 1ug2_A 2610100B20RIK gene prod 68.6 6.6 0.00022 35.7 5.1 55 732-794 30-84 (95)
122 2lq6_A Bromodomain-containing 60.2 5 0.00017 35.1 2.7 34 419-454 14-49 (87)
123 2ect_A Ring finger protein 126 55.6 6.1 0.00021 31.9 2.4 49 419-473 10-61 (78)
124 2kiz_A E3 ubiquitin-protein li 53.4 3.5 0.00012 32.6 0.6 48 420-473 10-60 (69)
125 1vyx_A ORF K3, K3RING; zinc-bi 51.9 0.97 3.3E-05 36.7 -2.9 50 423-474 5-57 (60)
126 2k1p_A Zinc finger RAN-binding 47.7 6.3 0.00021 29.0 1.1 12 462-473 4-15 (33)
127 2lk0_A RNA-binding protein 5; 47.1 5 0.00017 29.4 0.5 12 462-473 3-14 (32)
128 1v87_A Deltex protein 2; ring- 42.4 5.3 0.00018 34.5 0.0 30 443-472 60-90 (114)
129 3rsn_A SET1/ASH2 histone methy 42.2 20 0.00068 35.5 4.0 43 429-473 9-59 (177)
130 2dj7_A Actin-binding LIM prote 41.0 11 0.00038 31.3 1.8 56 414-473 5-71 (80)
131 1x64_A Alpha-actinin-2 associa 40.2 10 0.00036 31.7 1.5 50 420-473 21-81 (89)
132 1x4j_A Ring finger protein 38; 39.9 5.6 0.00019 32.1 -0.2 46 422-473 21-69 (75)
133 1iym_A EL5; ring-H2 finger, ub 39.6 12 0.00043 28.0 1.7 45 423-473 4-52 (55)
134 2ep4_A Ring finger protein 24; 38.8 6.7 0.00023 31.4 0.1 50 418-473 9-61 (74)
135 2ea6_A Ring finger protein 4; 37.5 8.3 0.00028 29.9 0.5 49 419-473 10-65 (69)
136 2d9g_A YY1-associated factor 2 37.2 15 0.0005 29.8 1.8 18 456-473 3-20 (53)
137 2xag_B REST corepressor 1; ami 34.3 8.4 0.00029 43.1 0.0 40 736-786 190-229 (482)
138 2ysl_A Tripartite motif-contai 33.4 16 0.00054 28.9 1.5 52 419-473 15-66 (73)
139 2ecm_A Ring finger and CHY zin 32.6 10 0.00035 28.4 0.2 45 423-473 4-52 (55)
140 2ecw_A Tripartite motif-contai 30.1 11 0.00037 30.3 -0.0 51 418-473 13-68 (85)
141 2l0b_A E3 ubiquitin-protein li 28.5 15 0.00051 31.1 0.6 46 422-473 38-86 (91)
142 4cpa_I Metallocarboxypeptidase 28.3 24 0.00083 27.2 1.6 15 458-472 15-29 (38)
143 3k1l_B Fancl; UBC, ring, RWD, 27.9 25 0.00086 38.4 2.3 52 423-474 307-371 (381)
144 2co8_A NEDD9 interacting prote 27.9 65 0.0022 26.6 4.4 51 420-474 11-75 (82)
145 1x62_A C-terminal LIM domain p 24.8 30 0.001 28.3 1.7 48 422-473 13-71 (79)
146 2ecn_A Ring finger protein 141 24.7 17 0.00058 28.7 0.2 47 419-472 10-56 (70)
147 2ct2_A Tripartite motif protei 24.7 17 0.00058 29.6 0.2 53 418-473 9-65 (88)
148 2egp_A Tripartite motif-contai 24.6 46 0.0016 26.5 2.8 50 419-473 7-62 (79)
149 4b2u_A S67; toxin, ICK; NMR {S 23.7 19 0.00067 27.1 0.4 12 460-471 14-25 (36)
150 2ecj_A Tripartite motif-contai 23.7 27 0.00091 26.2 1.2 46 419-470 10-58 (58)
151 1n0z_A ZNF265; zinc finger, RN 23.5 26 0.0009 27.4 1.1 12 461-472 11-24 (45)
152 2l4z_A DNA endonuclease RBBP8, 22.2 54 0.0018 29.6 3.0 47 423-473 60-120 (123)
153 2d8t_A Dactylidin, ring finger 21.9 50 0.0017 26.2 2.5 47 420-475 11-60 (71)
154 1g47_A Pinch protein; LIM doma 21.9 23 0.00077 28.5 0.4 51 418-472 5-68 (77)
155 3dzy_D Peroxisome proliferator 21.6 8.9 0.00031 41.2 -2.6 50 421-473 47-110 (419)
156 3nw0_A Non-structural maintena 21.2 29 0.00099 35.0 1.1 46 424-473 180-226 (238)
157 2ysj_A Tripartite motif-contai 21.0 20 0.00068 27.8 -0.1 46 419-470 15-63 (63)
158 2ecv_A Tripartite motif-contai 21.0 19 0.00067 28.8 -0.1 53 419-473 14-68 (85)
159 4bbq_A Lysine-specific demethy 20.9 29 0.00098 30.7 0.9 34 426-472 9-42 (117)
160 3dzy_A Retinoic acid receptor 20.1 13 0.00045 40.7 -1.7 51 421-473 134-198 (467)
No 1
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=6.9e-18 Score=140.97 Aligned_cols=56 Identities=29% Similarity=0.460 Sum_probs=51.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCCC
Q 003750 732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSP 795 (798)
Q Consensus 732 RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks~ 795 (798)
.|.+++||+||+++|++||++|| . +|++|+..|+ |+.+||+||||||||||.|+..
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G-----~-~W~~I~~~y~--f~~~RT~VdLKdk~r~L~k~~~ 60 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMG-----N-HWNSILWSFP--FQKGRRAVDLAHKYHRLISGPS 60 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHC-----S-CHHHHHHHSC--CCTTCCHHHHHHHHHHHHTCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHh-----H-hHHHHHHhCC--CccCcccchHHHHHHHHHhccc
Confidence 46788999999999999999999 4 9999999998 6799999999999999998753
No 2
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.62 E-value=2.7e-16 Score=142.49 Aligned_cols=60 Identities=28% Similarity=0.484 Sum_probs=54.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCCC
Q 003750 730 QLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSP 795 (798)
Q Consensus 730 ~~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks~ 795 (798)
+.||++++||.||+++|++||++|| .|+|++|+..++++| .+||.||||||||||.|+..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G-----~g~W~~I~~~~~~~f-~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLG-----TGRWRDVKLCAFEDA-DHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHC-----SSSHHHHHSSSSSST-TCCCHHHHHHHHHHHHHTTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-----CCChHHHHHHhcccc-CCCCHHHHHHHHHHHHhhcc
Confidence 4678899999999999999999999 799999999887767 89999999999999998764
No 3
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.59 E-value=9.1e-16 Score=142.35 Aligned_cols=60 Identities=28% Similarity=0.438 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750 728 IPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 793 (798)
Q Consensus 728 ~p~~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk 793 (798)
.+..||++++||.||+++|++||++|| .|+|++|+..++.+| .+||.||||||||||.|+
T Consensus 24 ~~~~rr~r~~WT~EEd~~L~~gV~k~G-----~g~W~~I~~~~~~~~-~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 24 DFGQRRIRRPFTVAEVELLVEAVEHLG-----TGRWRDVKFRAFENV-HHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHHS-----SSCHHHHHHHHHSSS-CCCCHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCCCCHHHHHHHHHHHHHHC-----CCChHHHHHHhcccc-CCCCHHHHHHHHHHHHhh
Confidence 345788999999999999999999999 799999999877667 899999999999999964
No 4
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.55 E-value=3.9e-15 Score=137.96 Aligned_cols=59 Identities=27% Similarity=0.459 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750 729 PQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 793 (798)
Q Consensus 729 p~~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk 793 (798)
...||++.+||.||+++|++||++|| .|+|++|+..+..+| .+||.||||||||||.|+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G-----~G~W~~Ia~~~~~~f-~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLG-----TGRWRDVKMRAFDNA-DHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHG-----GGCHHHHHHHHCSCC-SSCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHC-----CCCHHHHHHHhcccc-CCCCHHHHHHHHHHHHhh
Confidence 45688999999999999999999999 799999999988777 899999999999999983
No 5
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.49 E-value=1.3e-14 Score=126.58 Aligned_cols=53 Identities=26% Similarity=0.478 Sum_probs=48.4
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750 736 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 794 (798)
Q Consensus 736 r~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks 794 (798)
++||.||+++|++||++|| .|+|++|+..|+.+| ++||.+|||||||||.|++
T Consensus 1 r~WT~eEd~~L~~gv~k~G-----~g~W~~I~~~~~~~~-~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLG-----TGRWRDVKMRAFDNA-DHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHC-----SSCHHHHHHHHCTTC-TTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHC-----CCCcHHHHHhhcccc-CCCCHHHHHHHHHHHHHhc
Confidence 5899999999999999999 799999999877656 8999999999999999743
No 6
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.38 E-value=2.6e-13 Score=112.63 Aligned_cols=55 Identities=40% Similarity=0.620 Sum_probs=48.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750 732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 794 (798)
Q Consensus 732 RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks 794 (798)
.+++.+||+||+++|+++|++|| .++|+.|.+.++ | .+||.+|++||||||.|..
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G-----~~~W~~Ia~~~~--~-~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYG-----EGNWAAISKNYP--F-VNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHC-----TTCHHHHHHHSC--C-SSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHccC-----CCchHHHHhhcC--C-CCCCHHHHHHHHHHHhccC
Confidence 35677999999999999999999 789999998765 3 7999999999999998753
No 7
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.36 E-value=1.8e-13 Score=113.45 Aligned_cols=51 Identities=29% Similarity=0.766 Sum_probs=47.0
Q ss_pred cccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCccccccc
Q 003750 422 TEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTL 474 (798)
Q Consensus 422 ~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~k 474 (798)
.++++|.+|+.+|+||+|| +|+.+||..|++++....|+|+||||.|..++
T Consensus 6 ~~~~~C~vC~~~g~ll~CD--~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRDGGELICCD--GCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSCCSSCEECS--SCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCccCCCCCCEEEcC--CCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 3678999999999999999 99999999999999989999999999997543
No 8
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.35 E-value=2.5e-13 Score=111.36 Aligned_cols=52 Identities=33% Similarity=0.782 Sum_probs=47.8
Q ss_pred cccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCccccccch
Q 003750 422 TEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLS 475 (798)
Q Consensus 422 ~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ka 475 (798)
.++++|.+|+.+|+||+|| +|+.+||..|++++....|+|+||||.|..+..
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 7 HHMEFCRVCKDGGELLCCD--TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SSCSSCTTTCCCSSCBCCS--SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCCcCCCCCCCCCEEEcC--CCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 4678899999999999999 999999999999999999999999999986543
No 9
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.35 E-value=3.1e-13 Score=119.39 Aligned_cols=53 Identities=21% Similarity=0.528 Sum_probs=48.4
Q ss_pred CcccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCccccccch
Q 003750 421 WTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLS 475 (798)
Q Consensus 421 ~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ka 475 (798)
-.++++|.+|+.+|+||+|| +||.+||..|+.|+....|+|+||||.|.+...
T Consensus 22 d~n~~~C~vC~~~g~LL~CD--~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 22 DDSATICRVCQKPGDLVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp SSSSSCCSSSCSSSCCEECT--TSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred CCCCCcCcCcCCCCCEEECC--CCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 34678999999999999999 999999999999999999999999999986543
No 10
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.33 E-value=5.6e-13 Score=109.30 Aligned_cols=52 Identities=31% Similarity=0.763 Sum_probs=47.7
Q ss_pred CCcccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750 420 GWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 420 ~~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
+-.++++|.+|+.+|+||+|| +|+.+||..|++++....|+|+||||.|...
T Consensus 7 ~~~~~~~C~vC~~~g~ll~CD--~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 7 ETDHQDYCEVCQQGGEIILCD--TCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SSCCCSSCTTTSCCSSEEECS--SSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred cCCCCCCCccCCCCCcEEECC--CCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 345678999999999999999 9999999999999988899999999999754
No 11
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.32 E-value=3.3e-13 Score=109.72 Aligned_cols=48 Identities=42% Similarity=0.877 Sum_probs=45.3
Q ss_pred ccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCccccc
Q 003750 423 EQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAY 472 (798)
Q Consensus 423 ~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y 472 (798)
++++|.+|+.+|+||+|| +|+.+||..|++++....|+|+||||.|..
T Consensus 4 ~~~~C~vC~~~g~ll~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCD--TCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCCSSCEECS--SSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCCCcEEEcC--CCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 568999999999999999 999999999999999999999999999963
No 12
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=9e-13 Score=105.99 Aligned_cols=49 Identities=41% Similarity=0.849 Sum_probs=46.0
Q ss_pred CcccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750 421 WTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA 471 (798)
Q Consensus 421 ~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~ 471 (798)
-.++++|.+|+.+|+||+|| +|+.+||..|+++++...|+|+||||.|.
T Consensus 6 ~~~~~~C~vC~~~g~ll~Cd--~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 6 SGHEDFCSVCRKSGQLLMCD--TCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CSSCCSCSSSCCSSCCEECS--SSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCCccCCCCCeEEEcC--CCCcceECccCCCCcCCCCCCceEChhhh
Confidence 45678999999999999999 99999999999999999999999999995
No 13
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.28 E-value=1.2e-12 Score=109.66 Aligned_cols=49 Identities=20% Similarity=0.406 Sum_probs=45.5
Q ss_pred ccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750 423 EQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 423 ~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
+...|.+|+.+|+||+|| +|+.+||..|+.++....|+|+||||.|.-.
T Consensus 11 ~~~~C~vC~~~~~ll~Cd--~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCT--HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCCTTCEECS--SSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCCCeEEECC--CCCCceecccCCCccCcCCCCCEECccccCC
Confidence 456799999999999999 9999999999999999999999999999743
No 14
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.26 E-value=1.9e-12 Score=124.10 Aligned_cols=49 Identities=29% Similarity=0.731 Sum_probs=46.3
Q ss_pred ccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750 423 EQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 423 ~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
++++|.+|+.+|+||||| +||.+||..|++++....|+|+||||.|...
T Consensus 3 ~~~~C~~C~~~g~ll~Cd--~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCE--KCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCCSSCEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCCCeeeecC--CCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 678999999999999999 9999999999999999999999999999854
No 15
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.24 E-value=2.9e-12 Score=125.27 Aligned_cols=51 Identities=27% Similarity=0.667 Sum_probs=47.1
Q ss_pred cccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCccccccc
Q 003750 422 TEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTL 474 (798)
Q Consensus 422 ~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~k 474 (798)
.++++|..|+.+|+||||| +||.+||..|++++....|+|+||||.|.-..
T Consensus 5 ~~~~~C~~C~~~g~ll~Cd--~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNGGDLLCCE--KCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCCEEEEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCceEEcC--CCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3668899999999999999 99999999999999999999999999998543
No 16
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.20 E-value=1.2e-11 Score=97.94 Aligned_cols=52 Identities=40% Similarity=0.696 Sum_probs=47.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 793 (798)
Q Consensus 734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk 793 (798)
++.+||+||++.|+.+|++|| .++|+.|...++ | .+||.++++++|+||.|.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G-----~~~W~~Ia~~~~--~-~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYG-----EGNWSKILLHYK--F-NNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHC-----TTCHHHHHHHSC--C-SSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHC-----cCCHHHHHHHcC--C-CCCCHHHHHHHHHHHHcc
Confidence 467999999999999999999 789999999765 3 489999999999999986
No 17
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.20 E-value=1.9e-11 Score=101.45 Aligned_cols=58 Identities=38% Similarity=0.639 Sum_probs=51.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750 729 PQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 794 (798)
Q Consensus 729 p~~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks 794 (798)
++.++++.+||.||++.|+.+|++|| .++|+.|...++ | .+||.++++++|+|+.+..
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G-----~~~W~~Ia~~~~--~-~~Rt~~qcr~Rw~~~l~p~ 61 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYG-----EGNWSKILLHYK--F-NNRTSVMLKDRWRTMKKLK 61 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHC-----SSCHHHHHHHSC--C-SSCCHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHC-----CCcHHHHHHHcC--c-CCCCHHHHHHHHHHHcCCC
Confidence 44578889999999999999999999 789999999765 3 4999999999999998754
No 18
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.18 E-value=8e-12 Score=121.60 Aligned_cols=48 Identities=23% Similarity=0.629 Sum_probs=45.8
Q ss_pred cccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750 424 QNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 424 ~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
+++|..|+.+|+||||| +||.+||..|+.++....|+|+|+||.|...
T Consensus 2 ~~~C~~C~~~g~ll~Cd--~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCT--TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCCceeECC--CCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 57899999999999999 9999999999999999999999999999866
No 19
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.17 E-value=5.7e-12 Score=106.82 Aligned_cols=52 Identities=33% Similarity=0.714 Sum_probs=46.1
Q ss_pred CCCcccccccccCCCC-----cEEecCCCCCcccccccccCCCCccCCCCCccCccccccc
Q 003750 419 SGWTEQNLCVKCNKDG-----QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTL 474 (798)
Q Consensus 419 s~~~~~d~C~~C~~~G-----qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~k 474 (798)
+...+.++|.+|+.+| +||+|| +|+++||..|++++. .|+|+||||.|..++
T Consensus 11 ~~~~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~~H~~Cl~~~~--vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 11 SLIDEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVPY--IPEGQWLCRHCLQSR 67 (71)
T ss_dssp CCCCSSCSCSSSCCCCCCSSSCEEECS--SSCCEEEHHHHTCSS--CCSSCCCCHHHHHHH
T ss_pred cCCCCCCCCCCCCCCCCCCCCCEEECC--CCCCccccccCCCCc--CCCCCcCCccCcCcC
Confidence 5667889999999886 999999 999999999999984 789999999997543
No 20
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=99.15 E-value=1.2e-11 Score=117.43 Aligned_cols=63 Identities=22% Similarity=0.517 Sum_probs=50.9
Q ss_pred ccchhhhccCCccccCCCcccccccccCCCCcEEecCCCCCcccccccccCCCCc------c-CCCCCccCccccccch
Q 003750 404 FLSSQAALGHDSLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVK------F-DEKGNFHCPFCAYTLS 475 (798)
Q Consensus 404 fLsSq~t~~~ds~~~s~~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~------~-~peGdW~CP~C~y~ka 475 (798)
|++...+.+.|. ++++|..|+.||+||||| +||++||..|+.+++. . .|+|+|+||.|..+..
T Consensus 50 y~~~~~~~d~Dg-------~~d~C~vC~~GG~LlcCD--~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~pl 119 (142)
T 2lbm_A 50 YMSDDISRDSDG-------MDEQCRWCAEGGNLICCD--FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPL 119 (142)
T ss_dssp HHHSCCCBCTTS-------CBCSCSSSCCCSSEEECS--SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCTT
T ss_pred HhcCCceecCCC-------CCCeecccCCCCcEEeCC--CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCccH
Confidence 555555544433 578999999999999999 9999999999998763 1 5899999999987644
No 21
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.15 E-value=1e-11 Score=108.72 Aligned_cols=52 Identities=33% Similarity=0.714 Sum_probs=46.0
Q ss_pred CCCcccccccccCCCC-----cEEecCCCCCcccccccccCCCCccCCCCCccCccccccc
Q 003750 419 SGWTEQNLCVKCNKDG-----QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTL 474 (798)
Q Consensus 419 s~~~~~d~C~~C~~~G-----qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~k 474 (798)
....++++|.+|+.+| +||+|| +|+.+||..|++++. .|+|+||||.|....
T Consensus 20 ~~~~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 20 SLIDEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVPY--IPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCCCSSCCSSSSCSEEEEEECS--SSCCCCCHHHHTCSS--CCSSCCCCHHHHHHT
T ss_pred CcCCCCCcCCcCCCCCCCCCCCEEECC--CCCchhhcccCCCCc--cCCCceECccccCcc
Confidence 3456789999999998 999999 999999999999984 789999999997543
No 22
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.12 E-value=1.4e-11 Score=101.01 Aligned_cols=52 Identities=17% Similarity=0.599 Sum_probs=45.6
Q ss_pred cccccccccCCC-----CcEEecCCCCCcccccccccCCCCcc---CCCCCccCccccccch
Q 003750 422 TEQNLCVKCNKD-----GQLLSCSSSTCPLAVHENCLGFPVKF---DEKGNFHCPFCAYTLS 475 (798)
Q Consensus 422 ~~~d~C~~C~~~-----GqLLcCD~~gCP~ayH~~Clg~~~~~---~peGdW~CP~C~y~ka 475 (798)
.++++|.+|+.+ |+||+|| +|+.+||..|+++++.. +|+|+||||.|.+..+
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd--~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICD--KCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECS--SSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECC--CCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 456899999988 9999999 99999999999998654 4899999999986654
No 23
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=2.7e-11 Score=106.71 Aligned_cols=50 Identities=28% Similarity=0.656 Sum_probs=45.2
Q ss_pred CCcccccccccCCCCc---EEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750 420 GWTEQNLCVKCNKDGQ---LLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA 471 (798)
Q Consensus 420 ~~~~~d~C~~C~~~Gq---LLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~ 471 (798)
...+.+.|.+|+.+|. ||+|| +|+.+||..|+++++...|+|+||||.|.
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD--~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~ 64 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCD--GCDDNYHIFCLLPPLPEIPRGIWRCPKCI 64 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECT--TTCCEECSSSSSSCCSSCCSSCCCCHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcC--CCCchhccccCCCCcccCCCCCcCCccCc
Confidence 4455668999999884 99999 99999999999999999999999999995
No 24
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.10 E-value=2.5e-11 Score=95.39 Aligned_cols=45 Identities=33% Similarity=0.729 Sum_probs=41.1
Q ss_pred cccccCCCC---cEEecCCCCCcccccccccCCCCccCCCCCccCccccc
Q 003750 426 LCVKCNKDG---QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAY 472 (798)
Q Consensus 426 ~C~~C~~~G---qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y 472 (798)
.|.+|+.+| +||+|| +|+.+||..|++++....|+|+||||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd--~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCD--ECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECT--TTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECC--CCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588999766 699999 999999999999998899999999999963
No 25
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=99.10 E-value=5e-11 Score=108.33 Aligned_cols=53 Identities=26% Similarity=0.713 Sum_probs=46.9
Q ss_pred CCCcccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750 419 SGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 419 s~~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
....++++|..|+.+|+||+||..+||.+||..||+ +...|+|+||||.|.+.
T Consensus 10 ~~~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~ 62 (107)
T 4gne_A 10 PKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCD 62 (107)
T ss_dssp CCCSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred CcCCCCCCCCcCCCCCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCC
Confidence 456788999999999999999977899999999999 55678999999998643
No 26
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.08 E-value=2.2e-11 Score=106.42 Aligned_cols=49 Identities=27% Similarity=0.528 Sum_probs=43.9
Q ss_pred ccccccccCCC-----CcEEecCCCCCcccccccccCCCCc----cCCCCCccCcccccc
Q 003750 423 EQNLCVKCNKD-----GQLLSCSSSTCPLAVHENCLGFPVK----FDEKGNFHCPFCAYT 473 (798)
Q Consensus 423 ~~d~C~~C~~~-----GqLLcCD~~gCP~ayH~~Clg~~~~----~~peGdW~CP~C~y~ 473 (798)
++.+|.+|+.+ |+||+|| +|+.+||..|+++++. .+|+|+||||.|...
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD--~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQ--ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECS--SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECC--CCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 46789999987 8999999 9999999999999976 389999999999643
No 27
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=1.8e-10 Score=98.98 Aligned_cols=46 Identities=28% Similarity=0.613 Sum_probs=42.7
Q ss_pred cccccccCC---CCcEEecCCCCCcccccccccCCCCccCCCC-CccCcccc
Q 003750 424 QNLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKFDEKG-NFHCPFCA 471 (798)
Q Consensus 424 ~d~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~~~peG-dW~CP~C~ 471 (798)
+..|.+|+. +|+||+|| +|+.+||..||++++...|+| +||||.|.
T Consensus 26 ~c~C~vC~~~~~~~~ll~CD--~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 26 SCSCRVCGGKHEPNMQLLCD--ECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 75 (77)
T ss_dssp SSSCSSSCCCCCSTTEEECS--SSCCEEETTSSSSCCSSCCCSSCCCCTTTC
T ss_pred CCCCcCcCCcCCCCCEEEcC--CCCccccccccCCCccCCCCCCCcCCcCcc
Confidence 448999994 89999999 999999999999999999999 99999996
No 28
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.99 E-value=2.2e-10 Score=96.62 Aligned_cols=45 Identities=29% Similarity=0.680 Sum_probs=41.3
Q ss_pred cccccC---CCCcEEecCCCCCcccccccccCCCCccCCCC-CccCccccc
Q 003750 426 LCVKCN---KDGQLLSCSSSTCPLAVHENCLGFPVKFDEKG-NFHCPFCAY 472 (798)
Q Consensus 426 ~C~~C~---~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peG-dW~CP~C~y 472 (798)
.|.+|+ .+|+||+|| +|+.+||..||++++...|+| +||||.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD--~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECT--TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcC--CCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 577888 478999999 999999999999999999999 999999973
No 29
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.86 E-value=1.1e-09 Score=94.30 Aligned_cols=44 Identities=30% Similarity=0.707 Sum_probs=39.7
Q ss_pred cccccCCC---CcEEecCCCCCcccccccccCCCCccCCCCC-ccCcccc
Q 003750 426 LCVKCNKD---GQLLSCSSSTCPLAVHENCLGFPVKFDEKGN-FHCPFCA 471 (798)
Q Consensus 426 ~C~~C~~~---GqLLcCD~~gCP~ayH~~Clg~~~~~~peGd-W~CP~C~ 471 (798)
.|.+|+.. ++||+|| +|+.+||..|+++++...|+|+ ||||.|.
T Consensus 28 ~C~vC~~~~d~~~ll~CD--~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~ 75 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECR 75 (77)
T ss_dssp SBTTTCCCSCGGGEEECT--TTCCEEETTTSSSCCSSCCSSSCCCCTTTC
T ss_pred cCCccCCCCCCcceeEeC--CCCCccCcccCCCcccCCCCCCceECcCcc
Confidence 46667665 6799999 9999999999999999999999 9999996
No 30
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.83 E-value=1.7e-09 Score=97.45 Aligned_cols=44 Identities=30% Similarity=0.778 Sum_probs=41.0
Q ss_pred cccccCCCC----cEEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750 426 LCVKCNKDG----QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA 471 (798)
Q Consensus 426 ~C~~C~~~G----qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~ 471 (798)
+|.+|+..| +||+|| +|+.+||..|+.++....|+|+||||.|.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd--~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~ 110 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCD--SCDRGFHMECCDPPLTRMPKGMWICQICR 110 (112)
T ss_dssp CBTTTCCCCCTTCCCEECT--TTCCEECGGGCSSCCSSCCSSCCCCTTTS
T ss_pred ccccccCcCCCccceEEcC--CCCCeeecccCCCCCCCCCCCCeECCCCC
Confidence 688998764 899999 99999999999999999999999999996
No 31
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.82 E-value=1.2e-09 Score=98.78 Aligned_cols=50 Identities=34% Similarity=0.779 Sum_probs=44.0
Q ss_pred CCcccc--cccccCC---CCcEEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750 420 GWTEQN--LCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA 471 (798)
Q Consensus 420 ~~~~~d--~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~ 471 (798)
.|.=.+ .|.+|+. +|+||+|| +|+.+||..|+++++...|+|+||||.|.
T Consensus 52 ~W~C~~C~~C~~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~ 106 (114)
T 2kwj_A 52 KWQCIECKSCILCGTSENDDQLLFCD--DCDRGYHMYCLNPPVAEPPEGSWSCHLCW 106 (114)
T ss_dssp TCCCGGGCCCTTTTCCTTTTTEEECS--SSCCEEETTTSSSCCSSCCSSCCCCHHHH
T ss_pred ccCccccCccCcccccCCCCceEEcC--CCCccccccccCCCccCCCCCCeECcccc
Confidence 454333 6889988 68999999 99999999999999999999999999995
No 32
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.81 E-value=1.5e-09 Score=109.69 Aligned_cols=46 Identities=28% Similarity=0.640 Sum_probs=39.4
Q ss_pred cccccccCC---CCcEEecCCCCCcccccccccCCCCccCCCC-CccCcccc
Q 003750 424 QNLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKFDEKG-NFHCPFCA 471 (798)
Q Consensus 424 ~d~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~~~peG-dW~CP~C~ 471 (798)
...|..|+. +|.||+|| +|+.+||..|++||+...|+| +||||.|.
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD--~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~ 223 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECR 223 (226)
T ss_dssp TTSCSSSCCCCC--CCEECS--SSCCEECSCC--CCCCSCCSSSCCCCGGGC
T ss_pred CCCCcCCCCCCCCCCeEEcC--CCCcceeCccCCCCcccCCCCCCCCCcCCc
Confidence 458999997 78999999 999999999999999999999 99999996
No 33
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.76 E-value=7e-09 Score=87.86 Aligned_cols=54 Identities=24% Similarity=0.728 Sum_probs=43.3
Q ss_pred cCCCcccccccccCC--CCcEEecCCCCCcc-cccccccCCCCccCCCCCccCccccccc
Q 003750 418 TSGWTEQNLCVKCNK--DGQLLSCSSSTCPL-AVHENCLGFPVKFDEKGNFHCPFCAYTL 474 (798)
Q Consensus 418 ~s~~~~~d~C~~C~~--~GqLLcCD~~gCP~-ayH~~Clg~~~~~~peGdW~CP~C~y~k 474 (798)
..+-.+..+| .|+. .|.+|+||.-.|++ .||..|||.. ..|.|.||||.|..++
T Consensus 10 ~~d~~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~--~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 10 PVDPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLT--TKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCTTSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCS--SCCSSCCCCTTTSSCS
T ss_pred ccCCCCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcC--cCCCCCEECCCCCccc
Confidence 4455677899 6999 89999999333995 9999999965 4578999999997653
No 34
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.75 E-value=4.9e-09 Score=93.51 Aligned_cols=48 Identities=29% Similarity=0.726 Sum_probs=44.2
Q ss_pred cccccccccCCCCcE---EecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750 422 TEQNLCVKCNKDGQL---LSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA 471 (798)
Q Consensus 422 ~~~d~C~~C~~~GqL---LcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~ 471 (798)
.++++|.+|+.+|+| |+|+ +||.+||..||+++....+.|.|+||.|.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~--~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCT--TCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECS--SSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECC--CCCCCcChHHhCCccccccccCccCCcCC
Confidence 477899999999998 9999 99999999999998776788999999995
No 35
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.72 E-value=1.3e-09 Score=102.07 Aligned_cols=50 Identities=24% Similarity=0.579 Sum_probs=43.0
Q ss_pred ccccccccCCCCcEEecCCCCCcccccccccCCCC------c-cCCCCCccCccccccc
Q 003750 423 EQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPV------K-FDEKGNFHCPFCAYTL 474 (798)
Q Consensus 423 ~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~------~-~~peGdW~CP~C~y~k 474 (798)
++++|..|+.||+||||| +||++||..|+.+.+ . ..|+|+|+|+.|.-+.
T Consensus 56 ~~~~C~vC~dGG~LlcCd--~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~p 112 (129)
T 3ql9_A 56 MDEQCRWCAEGGNLICCD--FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEP 112 (129)
T ss_dssp CBSSCTTTCCCSEEEECS--SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGG
T ss_pred CCCcCeecCCCCeeEecC--CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHH
Confidence 567899999999999999 999999999999752 2 2389999999997553
No 36
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.71 E-value=1.2e-08 Score=80.08 Aligned_cols=49 Identities=31% Similarity=0.612 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 792 (798)
Q Consensus 734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K 792 (798)
++.+||.||++.|+.+|++|| .++|+.|... +++||..+++++|+++..
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G-----~~~W~~Ia~~-----~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNG-----TDDWKVIANY-----LPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHC-----SSCHHHHHHT-----STTCCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHhC-----CCCHHHHHHH-----cCCCCHHHHHHHHHHHcC
Confidence 467999999999999999999 6899999984 368999999999999864
No 37
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.70 E-value=5.8e-09 Score=87.55 Aligned_cols=50 Identities=30% Similarity=0.645 Sum_probs=43.6
Q ss_pred CcccccccccCCC--C-cEEecCCCCCcccccccccCCCCccCCCCCccCccccc
Q 003750 421 WTEQNLCVKCNKD--G-QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAY 472 (798)
Q Consensus 421 ~~~~d~C~~C~~~--G-qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y 472 (798)
-.+..+|.+|+.. | .+|+|| +|+..||..|||++....|.|+||||.|..
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD--~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCD--DCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECS--SSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CCCCcCCCCCCCCCCCCCEEEcC--CCCcccccccCCCCccCCCCCCEEChhccC
Confidence 4556789999885 4 799999 999999999999998877889999999963
No 38
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.68 E-value=2.5e-08 Score=80.50 Aligned_cols=52 Identities=31% Similarity=0.578 Sum_probs=46.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750 733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 794 (798)
Q Consensus 733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks 794 (798)
.++.+||.||++.|+++|++|| .++|+.|... +.+||..+++++|+++.+-.
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G-----~~~W~~Ia~~-----~~~Rt~~qcr~Rw~~~l~p~ 57 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFG-----QQDWKFLASH-----FPNRTDQQCQYRWLRVLSGP 57 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTC-----TTCHHHHHHH-----CSSSCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHhC-----CCCHHHHHHH-----ccCCCHHHHHHHHHHHcCCc
Confidence 4677999999999999999999 6799999985 36899999999999987643
No 39
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.67 E-value=5.4e-09 Score=85.66 Aligned_cols=51 Identities=29% Similarity=0.845 Sum_probs=39.7
Q ss_pred CCcccccccccCC--CCcEEecCCCCCcc-cccccccCCCCccCCCCCccCcccccc
Q 003750 420 GWTEQNLCVKCNK--DGQLLSCSSSTCPL-AVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 420 ~~~~~d~C~~C~~--~GqLLcCD~~gCP~-ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
+-.+..+| .|++ +|.+|.||.-.||+ .||..|+|.+ ..|.|.||||.|..+
T Consensus 5 d~~e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl~--~~p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 5 GSNEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDLT--TKPKGKWFCPRCVQE 58 (59)
T ss_dssp ---CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCS--SCCSSCCCCHHHHCC
T ss_pred CCCCCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCcc--cCCCCCEECcCccCc
Confidence 34566788 8999 89999999333995 9999999965 457799999999644
No 40
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.67 E-value=9.6e-09 Score=91.65 Aligned_cols=54 Identities=28% Similarity=0.734 Sum_probs=47.3
Q ss_pred CCCcccc--cccccCCCCc---EEecCCCCCcccccccccCCCCccCCCCCccCccccccc
Q 003750 419 SGWTEQN--LCVKCNKDGQ---LLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTL 474 (798)
Q Consensus 419 s~~~~~d--~C~~C~~~Gq---LLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~k 474 (798)
..|.=.+ +|.+|+..|. ||.|| +|+.+||..|+.+++...|+|+||||.|...+
T Consensus 47 ~~W~C~~C~~C~~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 47 AGWQCPECKVCQNCKQSGEDSKMLVCD--TCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp TTCCCTTTCCCTTTCCCSCCTTEEECS--SSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred cCccCCcCCcccccCccCCCCCeeECC--CCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 4566554 7999999886 99999 99999999999999999999999999997654
No 41
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.63 E-value=3.4e-08 Score=77.63 Aligned_cols=49 Identities=33% Similarity=0.615 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 792 (798)
Q Consensus 734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K 792 (798)
++.+||.||++.|+.+|++|| .++|..|... +.+||..+.+++|.|...
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G-----~~~W~~Ia~~-----~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYG-----PKRWSVIAKH-----LKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHC-----TTCHHHHHTT-----STTCCHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHHHHC-----cChHHHHHHH-----cCCCCHHHHHHHHHHHcC
Confidence 467999999999999999999 5789999974 369999999999999764
No 42
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.63 E-value=8.9e-09 Score=84.41 Aligned_cols=51 Identities=25% Similarity=0.754 Sum_probs=38.9
Q ss_pred CCcccccccccCC--CCcEEecCCCCCc-ccccccccCCCCccCCCCCccCcccccc
Q 003750 420 GWTEQNLCVKCNK--DGQLLSCSSSTCP-LAVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 420 ~~~~~d~C~~C~~--~GqLLcCD~~gCP-~ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
+-.+..+| +|+. +|.+|.||.-.|| ..||..|||.+ ..|.|.||||.|..+
T Consensus 6 d~~e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvgl~--~~p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 6 DPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLT--TKPRGKWFCPRCSQE 59 (60)
T ss_dssp ---CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCS--SCCSSCCCCHHHHC-
T ss_pred CCCCCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCCCC--cCCCCCEECcCccCc
Confidence 34456788 7998 8999999922399 69999999965 457899999999643
No 43
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.59 E-value=5e-08 Score=86.64 Aligned_cols=47 Identities=21% Similarity=0.576 Sum_probs=39.5
Q ss_pred cccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCccccccch
Q 003750 426 LCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLS 475 (798)
Q Consensus 426 ~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ka 475 (798)
+|..|..+|.||+|| +|+..||..|++++...+| +.||||.|.-+..
T Consensus 32 iC~~~~~~~~mi~Cd--~C~~w~H~~C~~~~~~~~p-~~w~C~~C~~~~~ 78 (98)
T 2lv9_A 32 ICGFTHDDGYMICCD--KCSVWQHIDCMGIDRQHIP-DTYLCERCQPRNL 78 (98)
T ss_dssp TTSCCSCSSCEEEBT--TTCBEEETTTTTCCTTSCC-SSBCCTTTSSSCC
T ss_pred ECCCccCCCcEEEcC--CCCCcCcCcCCCCCccCCC-CCEECCCCcCCCC
Confidence 466666789999999 9999999999999877676 4899999975543
No 44
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.56 E-value=7.2e-08 Score=85.66 Aligned_cols=52 Identities=25% Similarity=0.740 Sum_probs=41.5
Q ss_pred CCcccccccccCC--CCcEEecCCCCCc-ccccccccCCCCccCCCCCccCccccccc
Q 003750 420 GWTEQNLCVKCNK--DGQLLSCSSSTCP-LAVHENCLGFPVKFDEKGNFHCPFCAYTL 474 (798)
Q Consensus 420 ~~~~~d~C~~C~~--~GqLLcCD~~gCP-~ayH~~Clg~~~~~~peGdW~CP~C~y~k 474 (798)
+-.+..+| +|+. .|.+|+||.-.|| -.||..|||... .|.|.||||.|..++
T Consensus 32 d~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~--~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTT--KPRGKWFCPRCSQES 86 (91)
T ss_dssp CSCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSS--CCCSSCCCTTTCCCC
T ss_pred CCCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCc--CCCCCEECcCccCcC
Confidence 33456788 9999 8999999922399 589999999753 567999999998654
No 45
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.53 E-value=2.3e-08 Score=82.72 Aligned_cols=51 Identities=29% Similarity=0.755 Sum_probs=40.2
Q ss_pred CCcccccccccCC--CCcEEecCCCCCc-ccccccccCCCCccCCCCCccCcccccc
Q 003750 420 GWTEQNLCVKCNK--DGQLLSCSSSTCP-LAVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 420 ~~~~~d~C~~C~~--~GqLLcCD~~gCP-~ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
+-.+..+| .|+. .|.+|+||.-.|| ..||..|||.+. .|.|.||||.|..+
T Consensus 7 d~~e~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl~~--~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 7 DPNEPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTY--KPKGKWYCPKCRGD 60 (62)
T ss_dssp ---CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSS--CCSSCCCCHHHHTC
T ss_pred CCCCCcEE-ECCCCCCCCeeeeeCCCCCcccEecccCCcCc--CCCCCEECcCcccC
Confidence 33456788 8999 8999999933399 899999999764 47899999999754
No 46
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.52 E-value=8.1e-08 Score=78.03 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCCC
Q 003750 733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSP 795 (798)
Q Consensus 733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks~ 795 (798)
..+.+||+||++.|+++|++|| .++|..|.... .+||..+.+++|.++.....
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G-----~~~W~~Ia~~~-----~~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCG-----FGNWQDVANQM-----CTKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTC-----TTCHHHHHHHH-----TTSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHC-----cCcHHHHHHHh-----CCCCHHHHHHHHHHHccCCC
Confidence 4667999999999999999999 68999999853 58999999999999876543
No 47
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=1.5e-07 Score=78.23 Aligned_cols=51 Identities=27% Similarity=0.518 Sum_probs=45.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750 733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 793 (798)
Q Consensus 733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk 793 (798)
.++.+||.||++.|+.+|++|| .++|+.|... +.+||..+.+++|++..+-
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G-----~~~W~~Ia~~-----l~~Rt~~qcr~Rw~~~L~p 57 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYG-----KNQWSRIASL-----LHRKSAKQCKARWYEWLDP 57 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTC-----SSCHHHHHHH-----STTCCHHHHHHHHHHTSCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHC-----cCCHHHHHHH-----hcCCCHHHHHHHHHHHcCC
Confidence 4677999999999999999999 6899999984 3589999999999998654
No 48
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.38 E-value=2.1e-07 Score=75.37 Aligned_cols=47 Identities=21% Similarity=0.471 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCC-CCCcchhHHHHhhhc
Q 003750 735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFS-GRTAIDLKDKWRNMC 791 (798)
Q Consensus 735 rr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~-~RT~VDLKDKWRNL~ 791 (798)
+.+||++|++.|+++|++|| .++|..|... .. +||..+.+++|.++.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G-----~~~W~~IA~~-----~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLG-----LGNWADIADY-----VGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTT-----TTCHHHHHHH-----HCSSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHC-----cCCHHHHHHH-----HCCCCCHHHHHHHHHHHc
Confidence 45899999999999999999 7899999974 34 899999999998863
No 49
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.35 E-value=1.9e-07 Score=78.22 Aligned_cols=51 Identities=31% Similarity=0.600 Sum_probs=44.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750 733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 794 (798)
Q Consensus 733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks 794 (798)
.++.+||.||++.|+++|++|| . +|+.|... +.+||..++|.+|.++.++.
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G-----~-~W~~Ia~~-----~~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFG-----R-RWTKISKL-----IGSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTC-----S-CHHHHHHH-----HSSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHC-----c-CHHHHHHH-----cCCCCHHHHHHHHHHHHHHH
Confidence 4677999999999999999999 3 99999983 36899999999999876643
No 50
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.34 E-value=3e-07 Score=78.64 Aligned_cols=49 Identities=31% Similarity=0.347 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750 733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 793 (798)
Q Consensus 733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk 793 (798)
-++.+||+||++.|++.|++||+ +|+.|... + +||..++|++|+.|.+.
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~------kW~~IA~~-----l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGN------DWATIGAA-----L-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSS------CHHHHHHH-----H-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC------CHHHHHHH-----h-CCCHHHHHHHHHHHHHH
Confidence 35679999999999999999993 69999973 4 89999999999998764
No 51
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.33 E-value=7.3e-08 Score=87.15 Aligned_cols=46 Identities=26% Similarity=0.616 Sum_probs=39.0
Q ss_pred cccccccCCCC----------cEEecCCCCCcccccccccCCCCc---cCCCCCccCcccc
Q 003750 424 QNLCVKCNKDG----------QLLSCSSSTCPLAVHENCLGFPVK---FDEKGNFHCPFCA 471 (798)
Q Consensus 424 ~d~C~~C~~~G----------qLLcCD~~gCP~ayH~~Clg~~~~---~~peGdW~CP~C~ 471 (798)
+++|..|..++ +||.|+ +||.+||..||++++. ..++|.|+||.|.
T Consensus 1 ~~~C~~C~~~~~~n~k~g~~~~Li~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 1 GSYCDFCLGGSNMNKKSGRPEELVSCA--DCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCCSSSCCBTTBCTTTCCCCCCEECS--SSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CCcCccCCCCccccccCCCCCCCeEeC--CCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 36788887654 899999 9999999999998743 4678999999994
No 52
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.32 E-value=2.5e-07 Score=82.10 Aligned_cols=50 Identities=28% Similarity=0.747 Sum_probs=38.9
Q ss_pred CCCcccccccccCC--CCcEEecCCCCCc-ccccccccCCCCccCCCCCccCcc-cc
Q 003750 419 SGWTEQNLCVKCNK--DGQLLSCSSSTCP-LAVHENCLGFPVKFDEKGNFHCPF-CA 471 (798)
Q Consensus 419 s~~~~~d~C~~C~~--~GqLLcCD~~gCP-~ayH~~Clg~~~~~~peGdW~CP~-C~ 471 (798)
.+-.+..+| .|+. .|.+|+||.-.|| -.||..|||... .|.|.||||. |.
T Consensus 21 ~~~~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVgl~~--~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 21 NNNQEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVGLKQ--APKGKWYCSKDCK 74 (90)
T ss_dssp ---CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSSCSS--CTTSCCCSSHHHH
T ss_pred CCCCCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCCCCc--CCCCCccCChhhc
Confidence 445566788 7996 8999999944488 589999999764 5779999999 84
No 53
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=3.5e-07 Score=76.72 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=44.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750 733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 794 (798)
Q Consensus 733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks 794 (798)
..+.+||.||++.|+++|++||......++|..|... ..+||..+.+.+|.++.+..
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~-----~~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADE-----LGNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHH-----HSSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHH-----hCCCCHHHHHHHHHHHHHHH
Confidence 3566999999999999999999210001799999984 36899999999997765543
No 54
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.30 E-value=6e-07 Score=78.90 Aligned_cols=50 Identities=26% Similarity=0.650 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 794 (798)
Q Consensus 734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks 794 (798)
++.+||.||++.|+.+|++|| .+|+.|.. ++++||..++|++|+++.|+.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G------~~W~~Ia~-----~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLG------NRWAEIAK-----LLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHS------SCHHHHHT-----TCTTCCHHHHHHHHHHHTC--
T ss_pred cccCCCHHHHHHHHHHHHHhC------CCHHHHHH-----HcCCCCHHHHHHHHHHHHhcc
Confidence 567999999999999999999 48999996 347999999999999998763
No 55
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.20 E-value=9.2e-07 Score=80.75 Aligned_cols=50 Identities=34% Similarity=0.814 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 794 (798)
Q Consensus 734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks 794 (798)
++.+||.||++.|+.+|++|| .+|+.|.. ++++||..++|++|++|.++.
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G------~~W~~Ia~-----~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYG------RQWAIIAK-----FFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHC------SCHHHHHT-----TSTTCCHHHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHHHHHC------cCHHHHHH-----HcCCCCHHHHHHHHHHHHHhc
Confidence 456999999999999999999 48999997 347999999999999998765
No 56
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.18 E-value=1.4e-06 Score=79.24 Aligned_cols=50 Identities=26% Similarity=0.643 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 794 (798)
Q Consensus 734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks 794 (798)
++.+||.||++.|+.+|++|| .+|+.|... +++||..++|++|+++.|+.
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G------~~W~~Ia~~-----l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLG------NRWAEIAKL-----LPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHC------SCHHHHGGG-----STTCCHHHHHHHHHTTTTC-
T ss_pred ccccCCHHHHHHHHHHHHHHC------cCHHHHHHH-----CCCCCHHHHHHHHHHHHhcc
Confidence 567999999999999999999 489999973 47999999999999998863
No 57
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.17 E-value=3.1e-07 Score=82.75 Aligned_cols=48 Identities=25% Similarity=0.538 Sum_probs=39.7
Q ss_pred cccccccccCCC---------CcEEecCCCCCcccccccccCCCC---ccCCCCCccCcccc
Q 003750 422 TEQNLCVKCNKD---------GQLLSCSSSTCPLAVHENCLGFPV---KFDEKGNFHCPFCA 471 (798)
Q Consensus 422 ~~~d~C~~C~~~---------GqLLcCD~~gCP~ayH~~Clg~~~---~~~peGdW~CP~C~ 471 (798)
....+|..|.++ |+||.|+ +|+.+||..||+..+ ..++.|+|+||.|.
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCA--DCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECT--TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred ccCccccccCCchhhCcCCCchhceEhh--hcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 356789999653 5899999 999999999999753 24578999999995
No 58
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.17 E-value=1.7e-06 Score=76.02 Aligned_cols=49 Identities=31% Similarity=0.600 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 792 (798)
Q Consensus 734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K 792 (798)
++.+||.||++.|+.+|++|| .++|..|... +++||..+.+++|++...
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g-----~~~W~~Ia~~-----l~~Rt~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYG-----PKRWSVIAKH-----LKGRIGKQCRERWHNHLN 51 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHC-----TTCHHHHHTT-----STTCCHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHhC-----CCcHHHHhhh-----hcCCCHHHHHHHHHhccC
Confidence 467999999999999999999 6789999973 479999999999999764
No 59
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.15 E-value=1.5e-06 Score=74.91 Aligned_cols=49 Identities=18% Similarity=0.319 Sum_probs=43.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhc
Q 003750 732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC 791 (798)
Q Consensus 732 RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~ 791 (798)
+..+.+||.+|+..|+++|++|| ++|.+|.+. ..+||..+.+.+|.++.
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G------~~W~~IA~~-----v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYK------DDWNKVSEH-----VGSRTQDECILHFLRLP 63 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSS------SCHHHHHHH-----HSSCCHHHHHHHHTTSC
T ss_pred cccCCCcCHHHHHHHHHHHHHhC------CCHHHHHHH-----cCCCCHHHHHHHHHHhc
Confidence 45677999999999999999999 699999984 25899999999999983
No 60
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.15 E-value=6.6e-07 Score=79.49 Aligned_cols=51 Identities=20% Similarity=0.655 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCCC
Q 003750 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSP 795 (798)
Q Consensus 734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks~ 795 (798)
++.+||.||++.|+.+|++|| .+|+.|... +++||..++|++|+.|.++..
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G------~~W~~Ia~~-----l~gRt~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYG------PKWNKISKF-----LKNRSDNNIRNRWMMIARHRA 102 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTC------SCHHHHHHH-----HSSSCHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhC------cCHHHHHHH-----CCCCCHHHHHHHHHHHHhhHH
Confidence 467999999999999999999 389999973 379999999999999987643
No 61
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.11 E-value=3.2e-06 Score=72.30 Aligned_cols=54 Identities=19% Similarity=0.471 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750 733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 793 (798)
Q Consensus 733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk 793 (798)
-.+.+||.+|...|+.+|++||. +...+|.+|... .++||..+.+.+|.+|++.
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~--~~~~rW~~IA~~-----vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPR--GSSDCWDKIARC-----VPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCS--SSHHHHHHHGGG-----CSSSCHHHHHHHHHHHHSS
T ss_pred cCCCCCCHHHHHHHHHHHHHcCC--CCCchHHHHHHH-----cCCCCHHHHHHHHHHHHHc
Confidence 45678999999999999999992 224689999974 4689999999999999764
No 62
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.08 E-value=2.8e-06 Score=77.94 Aligned_cols=50 Identities=26% Similarity=0.557 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 794 (798)
Q Consensus 734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks 794 (798)
++.+||.||++.|+.+|.+|| .+|+.|.. ++++||..++|++|+++.++.
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G------~~W~~Ia~-----~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLG------SKWSVIAK-----LIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSC------SCHHHHTT-----TSTTCCHHHHHHHHHHTTGGG
T ss_pred cCCCCCHHHHHHHHHHHHHHC------cCHHHHHH-----HcCCCCHHHHHHHHHHHHHHH
Confidence 456899999999999999999 58999986 347999999999999988764
No 63
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=1.8e-06 Score=70.88 Aligned_cols=47 Identities=28% Similarity=0.439 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 792 (798)
Q Consensus 734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K 792 (798)
++.+||.||++.|+.+|++|| . +|..|.. . .+||..+.+++|.++.+
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g-----~-~W~~Ia~-~-----~gRt~~qcr~Rw~~~l~ 54 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMP-----T-QWRTIAP-I-----IGRTAAQCLEHYEFLLD 54 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCT-----T-CHHHHHH-H-----HSSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcC-----C-CHHHHhc-c-----cCcCHHHHHHHHHHHhC
Confidence 567899999999999999999 3 9999997 2 36999999999998865
No 64
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.07 E-value=3.5e-06 Score=76.88 Aligned_cols=51 Identities=33% Similarity=0.600 Sum_probs=44.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750 731 LRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 792 (798)
Q Consensus 731 ~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K 792 (798)
+..++.+||.||++.|+.+|++|| . +|+.|... +.+||..+++++|+|...
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G-----~-~W~~Ia~~-----~~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHG-----S-DWKMIAAT-----FPNRNARQCRDRWKNYLA 57 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHT-----T-CHHHHHHT-----CTTCCHHHHHHHHHHHTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-----C-CHHHHHHH-----cCCCCHHHHHHHHhhhcc
Confidence 345778999999999999999999 4 99999873 368999999999999654
No 65
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.05 E-value=3.4e-06 Score=76.80 Aligned_cols=50 Identities=28% Similarity=0.614 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750 733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 792 (798)
Q Consensus 733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K 792 (798)
.++.+||.||++.|+.+|++|| .++|..|... +++||..+++++|.+...
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g-----~~~W~~Ia~~-----l~~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYG-----PKRWSDIAKH-----LKGRIGKQCRERWHNHLN 74 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTC-----SCCHHHHHHH-----SSSCCHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHC-----CCCHHHHHHH-----hcCCcHHHHHHHHHHhcc
Confidence 3567999999999999999999 5789999974 369999999999999764
No 66
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.01 E-value=4.3e-06 Score=74.26 Aligned_cols=48 Identities=23% Similarity=0.500 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750 735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 792 (798)
Q Consensus 735 rr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K 792 (798)
+.+||.||++.|+.+|++|| .++|..|... .++||..+..++|+|...
T Consensus 1 K~~Wt~eED~~L~~~v~~~g-----~~~W~~Ia~~-----~~~Rt~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYG-----AKDWIRISQL-----MITRNPRQCRERWNNYIN 48 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHC-----SSCHHHHHHH-----TTTSCHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHHC-----CCCHHHHhhh-----cCCCCHHHHHHHHHHHHc
Confidence 45899999999999999999 6899999974 368999999999999764
No 67
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.96 E-value=7.8e-06 Score=76.79 Aligned_cols=51 Identities=25% Similarity=0.624 Sum_probs=44.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750 733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 794 (798)
Q Consensus 733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks 794 (798)
.++.+||.+|++.|+.+|++|| .+|+.|.. |+++||..++|.+|+.|.|+.
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g------~~W~~Ia~-----~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLG------NRWAEIAK-----LLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHC------SCHHHHHT-----TSTTCCHHHHHHHHHTTTCC-
T ss_pred ccccCCChHHHHHHHHHHHHHC------CCHHHHHH-----HCCCCCHHHHHHHHHHHHhcc
Confidence 3567999999999999999999 48999997 347999999999999998863
No 68
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=97.91 E-value=1e-05 Score=74.16 Aligned_cols=48 Identities=23% Similarity=0.551 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750 735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 792 (798)
Q Consensus 735 rr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K 792 (798)
+.+||.||++.|+.+|++|| .++|..|.. +.++||..+..++|+|...
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g-----~~~W~~Ia~-----~~~~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENG-----PQNWPRITS-----FLPNRSPKQCRERWFNHLD 49 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-----SCCGGGGTT-----SCTTSCHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHhC-----cCCHHHHHH-----HHCCCCHHHHHHHHhhccC
Confidence 46899999999999999999 689999986 3368999999999998764
No 69
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.86 E-value=4.9e-06 Score=70.33 Aligned_cols=46 Identities=33% Similarity=0.957 Sum_probs=37.3
Q ss_pred ccccccccCC--CCcEEecCCCCCc-ccccccccCCCCccCCCCCccCcccc
Q 003750 423 EQNLCVKCNK--DGQLLSCSSSTCP-LAVHENCLGFPVKFDEKGNFHCPFCA 471 (798)
Q Consensus 423 ~~d~C~~C~~--~GqLLcCD~~gCP-~ayH~~Clg~~~~~~peGdW~CP~C~ 471 (798)
+..+|+ |+. .|.+|.||.-.|| .-||..|||... .|.|.||||.|.
T Consensus 5 ~~~yC~-C~~~~~g~MI~CD~cdC~~~WfH~~Cvgl~~--~p~~~w~Cp~C~ 53 (70)
T 1x4i_A 5 SSGYCI-CNQVSYGEMVGCDNQDCPIEWFHYGCVGLTE--APKGKWYCPQCT 53 (70)
T ss_dssp CCCCST-TSCCCCSSEECCSCTTCSCCCEEHHHHTCSS--CCSSCCCCHHHH
T ss_pred CCeEEE-cCCCCCCCEeEeCCCCCCccCCcccccccCc--CCCCCEECCCCC
Confidence 445775 875 7899999944476 689999999865 478999999996
No 70
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.80 E-value=3.3e-06 Score=79.92 Aligned_cols=49 Identities=22% Similarity=0.588 Sum_probs=39.7
Q ss_pred cccccccccCC----CCcEEecCCCCCcccccccccCCCCc-cCCCCCccCcccccc
Q 003750 422 TEQNLCVKCNK----DGQLLSCSSSTCPLAVHENCLGFPVK-FDEKGNFHCPFCAYT 473 (798)
Q Consensus 422 ~~~d~C~~C~~----~GqLLcCD~~gCP~ayH~~Clg~~~~-~~peGdW~CP~C~y~ 473 (798)
.+..+| .|+. +|.+++|| +|+..||..|+|.+.. ....+.|+||.|.-.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd--~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCD--RCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECT--TTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECC--CCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 456788 9987 46699999 9999999999998743 345789999999754
No 71
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.00 E-value=2.9e-06 Score=74.15 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=44.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750 733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 794 (798)
Q Consensus 733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks 794 (798)
..+.+||.||++.|+.+|++|| . +|..|... +.+||..++|.+|.++.++.
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G-----~-~W~~IA~~-----l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHG-----R-NWSAIARM-----VGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 3567999999999999999999 3 79999863 37999999999999988764
No 72
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.78 E-value=2.6e-05 Score=73.19 Aligned_cols=50 Identities=30% Similarity=0.577 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 793 (798)
Q Consensus 734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk 793 (798)
++.+||.||++.|+.+|++|| .++|..|... +++||..+++++|++....
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g-----~~~W~~Ia~~-----l~~Rt~~qcr~Rw~~~l~p 106 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYG-----PKRWSVIAKH-----LKGRIGKQCRERWHNHLNP 106 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHC-----SCCHHHHHHT-----STTCCHHHHHHHHHHTTCT
T ss_pred CCCCCChHHHHHHHHHHHHhC-----cccHHHHHHH-----cCCCCHHHHHHHHHHHhCc
Confidence 567999999999999999999 5789999873 4799999999999997653
No 73
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.61 E-value=2.1e-05 Score=64.12 Aligned_cols=51 Identities=22% Similarity=0.585 Sum_probs=41.0
Q ss_pred cccccccccCC----CCcEEecCCCCCcccccccccCCCCccCC-CCCccCccccccc
Q 003750 422 TEQNLCVKCNK----DGQLLSCSSSTCPLAVHENCLGFPVKFDE-KGNFHCPFCAYTL 474 (798)
Q Consensus 422 ~~~d~C~~C~~----~GqLLcCD~~gCP~ayH~~Clg~~~~~~p-eGdW~CP~C~y~k 474 (798)
.+..+|..|++ +|..+.|| .|..=||..|+|.+....+ .+.|+||.|.-++
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCD--LCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECS--SSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCccCCCCCEEEcc--CCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 34568989986 47799999 9999999999999854332 4899999997654
No 74
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=97.51 E-value=6.4e-05 Score=66.98 Aligned_cols=51 Identities=22% Similarity=0.523 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750 735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 792 (798)
Q Consensus 735 rr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K 792 (798)
..+||.+|+..|+.++++||. +...+|.+|... .++||..+.+.+|.+|.+
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~--~~~~rW~~IA~~-----vpGRT~~q~k~ry~~l~~ 58 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDK--DTPDRWANVARA-----VEGRTPEEVKKHYEILVE 58 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCT--TCTTHHHHHHHH-----STTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC--CCCchHHHHHHH-----cCCCCHHHHHHHHHHHHH
Confidence 458999999999999999982 224689999984 368999999999999863
No 75
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=0.00015 Score=59.28 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=45.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750 731 LRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 793 (798)
Q Consensus 731 ~RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk 793 (798)
.|+...+||++|.+.+++|+.+|| .+|..|.. |.++||..++...|...+|.
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~g------k~w~~Ia~-----~l~~rt~~~~v~~Yy~~Kk~ 59 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHP------KNFGLIAS-----YLERKSVPDCVLYYYLTKKN 59 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHST------TCHHHHHH-----HCTTSCHHHHHHHHHHHTCC
T ss_pred ccccCCCCCHHHHHHHHHHHHHhC------CCHHHHHH-----HcCCCCHHHHHHHHHHhcCC
Confidence 456778999999999999999999 48999986 34799999999999887765
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.36 E-value=2.8e-05 Score=69.16 Aligned_cols=50 Identities=20% Similarity=0.603 Sum_probs=43.2
Q ss_pred CCcccccccccC--CCCcEEecCCCCCcccccccccCCC------------CccCCCCCccCcccc
Q 003750 420 GWTEQNLCVKCN--KDGQLLSCSSSTCPLAVHENCLGFP------------VKFDEKGNFHCPFCA 471 (798)
Q Consensus 420 ~~~~~d~C~~C~--~~GqLLcCD~~gCP~ayH~~Clg~~------------~~~~peGdW~CP~C~ 471 (798)
...+++.|.+|+ ..+.|+.|. .|.++||..||-.. ..-.+++-|.||+|.
T Consensus 11 ~~~~D~~C~VC~~~t~~~l~pCR--vC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 11 PVVNDEMCDVCEVWTAESLFPCR--VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCCCSCCCTTTCCCCSSCCSSCS--SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCCCCcccCccccccccceeccc--cccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 345889999999 789999999 99999999999764 445578999999995
No 77
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.30 E-value=0.00018 Score=73.88 Aligned_cols=56 Identities=16% Similarity=0.284 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750 733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 793 (798)
Q Consensus 733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk 793 (798)
..+.+||.||++.|++.|++||+.-.+...|+.|.. ++++||.-++|++|++..++
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk-----~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH-----YVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT-----TSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHH-----HcCCCCHHHHHHHHHHHHhh
Confidence 456799999999999999999931001123999997 34799999999999997654
No 78
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.20 E-value=0.0002 Score=61.03 Aligned_cols=51 Identities=24% Similarity=0.563 Sum_probs=40.5
Q ss_pred ccccccccCC---CCcEEecCCCCCcccccccccCCCCcc-----CCCCCccCccccccc
Q 003750 423 EQNLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKF-----DEKGNFHCPFCAYTL 474 (798)
Q Consensus 423 ~~d~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~~-----~peGdW~CP~C~y~k 474 (798)
..-+| .|+. +|..+.||...|..-||..|+|.+... ...+.||||.|..++
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 45678 5887 488999997789999999999997542 224799999997543
No 79
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.19 E-value=0.00025 Score=63.64 Aligned_cols=51 Identities=24% Similarity=0.429 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCC-CcCCCCCcchhHHHHhhhccC
Q 003750 736 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSS-VFFSGRTAIDLKDKWRNMCKG 793 (798)
Q Consensus 736 r~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~-vF~~~RT~VDLKDKWRNL~Kk 793 (798)
.+||.||++.|.+.+++|| .+|..|.+.|.. -| .+||-.|||++|..++++
T Consensus 31 ~~WTkEETd~Lf~L~~~fd------lRW~vI~DRy~~~~~-~~Rt~EdLK~RyY~v~~~ 82 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFD------LRFVVIHDRYDHQQF-KKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT------TCHHHHHHHSCTTTS-CCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhC------CCeeeehhhhccCCC-CCCCHHHHHHHHHHHHHH
Confidence 6999999999999999999 699999998752 12 579999999999776653
No 80
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.14 E-value=0.00012 Score=65.99 Aligned_cols=52 Identities=21% Similarity=0.533 Sum_probs=41.3
Q ss_pred ccccccCCC----CcEEecCCCCCcccccccccCCCCc------cCCCCCccCccccccchHH
Q 003750 425 NLCVKCNKD----GQLLSCSSSTCPLAVHENCLGFPVK------FDEKGNFHCPFCAYTLSIS 477 (798)
Q Consensus 425 d~C~~C~~~----GqLLcCD~~gCP~ayH~~Clg~~~~------~~peGdW~CP~C~y~ka~~ 477 (798)
..|.+|.+. |..+.|| .+|..=||..|+|.+.. -.|.+.|+||.|.-++...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cd-d~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~~ 65 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCE-ASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGS 65 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECT-TTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTTC
T ss_pred CCCCCCCCccCCCCCEEEec-CCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCCC
Confidence 468899875 7877776 49999999999999842 1577999999998765543
No 81
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.09 E-value=0.00033 Score=59.70 Aligned_cols=52 Identities=23% Similarity=0.417 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 793 (798)
Q Consensus 734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk 793 (798)
+...||.||...|..+|.+|+ ++-..+|.+|... + +||..+++.+|..|.+.
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p--~~t~~RW~~IA~~----l--gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFP--GGTPGRWEKIAHE----L--GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSC--TTCTTHHHHHHHH----H--TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCC--CCCCcHHHHHHHH----h--CCCHHHHHHHHHHHHHh
Confidence 456899999999999999998 3335789999984 2 69999999999999765
No 82
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=96.97 E-value=0.00045 Score=58.03 Aligned_cols=49 Identities=22% Similarity=0.518 Sum_probs=38.6
Q ss_pred CcccccccccCC--CC-cEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750 421 WTEQNLCVKCNK--DG-QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 421 ~~~~d~C~~C~~--~G-qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
-.+.-+| .|+. +| ..|.|| .|..=||..|+|.+....| +.||||.|.-+
T Consensus 16 ~~~~~~C-iC~~~~~~~~MIqCd--~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~~s 67 (68)
T 3o70_A 16 FQGLVTC-FCMKPFAGRPMIECN--ECHTWIHLSCAKIRKSNVP-EVFVCQKCRDS 67 (68)
T ss_dssp TTTCCCS-TTCCCCTTCCEEECT--TTCCEEETTTTTCCTTSCC-SSCCCHHHHTC
T ss_pred CCCceEe-ECCCcCCCCCEEECC--CCCccccccccCcCcccCC-CcEECCCCCCC
Confidence 3445567 8887 34 599999 8999999999999875444 79999999643
No 83
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.90 E-value=0.00038 Score=58.31 Aligned_cols=47 Identities=30% Similarity=0.664 Sum_probs=37.4
Q ss_pred cccccccCC---CC-cEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750 424 QNLCVKCNK---DG-QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 424 ~d~C~~C~~---~G-qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
.-+| .|+. +| ..|.|| .|-.=||..|+|........+.||||.|.-+
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd--~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACD--GCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECS--SSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECC--CCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 4578 4986 36 599999 9999999999999854334589999999643
No 84
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=96.88 E-value=0.00047 Score=57.37 Aligned_cols=49 Identities=24% Similarity=0.604 Sum_probs=36.2
Q ss_pred ccccccCC---CCcEEecCCCCCcccccccccCCCCccC----CCCCccCccccccc
Q 003750 425 NLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKFD----EKGNFHCPFCAYTL 474 (798)
Q Consensus 425 d~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~~~----peGdW~CP~C~y~k 474 (798)
-.| .|+. +|..+.||...|..-||..|+|.+.... ....||||.|..++
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~r 66 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLSR 66 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCcc
Confidence 456 5854 6899999944599999999999864321 12479999997554
No 85
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.54 E-value=0.001 Score=56.56 Aligned_cols=48 Identities=23% Similarity=0.622 Sum_probs=37.7
Q ss_pred ccccccccCC----CCcEEecCCCCCcccccccccCCCCcc-CCCCCccCcccccc
Q 003750 423 EQNLCVKCNK----DGQLLSCSSSTCPLAVHENCLGFPVKF-DEKGNFHCPFCAYT 473 (798)
Q Consensus 423 ~~d~C~~C~~----~GqLLcCD~~gCP~ayH~~Clg~~~~~-~peGdW~CP~C~y~ 473 (798)
..-+| .|+. +|..+.|| .|..=||..|+|..... ...+.|+||.|.-.
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECG--LCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBT--TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CccEE-EcCCccCCCCceEEcC--CCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 33456 7887 57899999 99999999999997532 22479999999744
No 86
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=96.46 E-value=0.0005 Score=57.44 Aligned_cols=49 Identities=18% Similarity=0.518 Sum_probs=38.2
Q ss_pred cccccccccCCC----CcEEecCCCCCcccccccccCCCCc------cCCCCCccCcccc
Q 003750 422 TEQNLCVKCNKD----GQLLSCSSSTCPLAVHENCLGFPVK------FDEKGNFHCPFCA 471 (798)
Q Consensus 422 ~~~d~C~~C~~~----GqLLcCD~~gCP~ayH~~Clg~~~~------~~peGdW~CP~C~ 471 (798)
.....|.+|++. ...+.|| .+|-.=||..|+|.... -.|.+.|+||.|.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD-~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCE-ASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBT-TTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecc-cCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 345679999973 3488999 49999999999999853 2478999999994
No 87
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.44 E-value=0.0038 Score=53.84 Aligned_cols=54 Identities=15% Similarity=0.276 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCCCC
Q 003750 736 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSPR 796 (798)
Q Consensus 736 r~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks~k 796 (798)
..||.+|..+|..++.+|+ -+..++|.+|... ..+||.-+.+.+|.-|.+....
T Consensus 9 ~~WT~eE~k~fe~ALa~~~--~~tp~rWe~IA~~-----V~gKT~eE~~~hY~~l~~~~~s 62 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLP--KHKPGFWSEVAAA-----VGSRSPEECQRKYMENPRGKGS 62 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSC--SSSSSHHHHHHHH-----TTTSCHHHHHHHHHHSSSSSCC
T ss_pred CCCCHHHHHHHHHHHHHCC--CCCccHHHHHHHH-----cCCCCHHHHHHHHHHHHhcccc
Confidence 4799999999999999998 2346899999984 3579999999999999776543
No 88
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.42 E-value=0.00054 Score=57.73 Aligned_cols=46 Identities=22% Similarity=0.678 Sum_probs=36.8
Q ss_pred ccccccCC---CCcEEecCCCCCcccccccccCCCCcc-----CCCCCccCcccccc
Q 003750 425 NLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKF-----DEKGNFHCPFCAYT 473 (798)
Q Consensus 425 d~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~~-----~peGdW~CP~C~y~ 473 (798)
-+| .|+. +|..+.|| .|..=||..|+|..... .+.+.||||.|..+
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd--~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCD--RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCS-TTCCCCCSSCEEECS--SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CEE-ECCCccCCCCEEEeC--CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 466 6887 36899999 99999999999998542 13589999999643
No 89
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=96.38 E-value=0.00082 Score=53.35 Aligned_cols=44 Identities=23% Similarity=0.644 Sum_probs=33.2
Q ss_pred ccccCC----CCcEEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750 427 CVKCNK----DGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA 471 (798)
Q Consensus 427 C~~C~~----~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~ 471 (798)
|..|++ ++..+.||+ +|..=||..|+|.+......+.|+||.|.
T Consensus 5 cc~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDG-GCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTT-TTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCC-CCCccCcccccCCCccccCCCCEECCCCC
Confidence 455554 345899995 79999999999998543334899999994
No 90
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=96.18 E-value=0.0025 Score=50.44 Aligned_cols=36 Identities=19% Similarity=0.481 Sum_probs=31.2
Q ss_pred CCcEEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750 433 DGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA 471 (798)
Q Consensus 433 ~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~ 471 (798)
+|..+.|| .|..=||..|+|.+....| +.|+||.|.
T Consensus 15 ~~~MI~Cd--~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~ 50 (52)
T 3o7a_A 15 GRPMIECN--ECHTWIHLSCAKIRKSNVP-EVFVCQKCR 50 (52)
T ss_dssp TCCEEECT--TTCCEEETTTTTCCGGGCC-SSCCCHHHH
T ss_pred CCCEEEcC--CCCccccccccCCCcccCC-CcEECcCCC
Confidence 46899999 8999999999999876444 799999995
No 91
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=96.12 E-value=0.005 Score=62.95 Aligned_cols=52 Identities=13% Similarity=0.385 Sum_probs=45.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750 732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 794 (798)
Q Consensus 732 RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks 794 (798)
.+...+||++|.+.+++|+++|| ..|..|.+. ..+||..+.|..|.+..|+.
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYG------KDW~~IAk~-----VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYG------RDFQAISDV-----IGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHS------SCHHHHHHH-----HSSCCHHHHHHHHHHTTTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHC------cCHHHHHHH-----cCCCCHHHHHHHHHHHHHHh
Confidence 35677999999999999999999 479999984 36899999999999888764
No 92
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=96.04 E-value=0.0044 Score=60.88 Aligned_cols=51 Identities=25% Similarity=0.651 Sum_probs=39.1
Q ss_pred ccccccCC---CC----cEEecCCCCCcccccccccCCCCc-------cCCCCCccCccccccchHH
Q 003750 425 NLCVKCNK---DG----QLLSCSSSTCPLAVHENCLGFPVK-------FDEKGNFHCPFCAYTLSIS 477 (798)
Q Consensus 425 d~C~~C~~---~G----qLLcCD~~gCP~ayH~~Clg~~~~-------~~peGdW~CP~C~y~ka~~ 477 (798)
++|.+|++ ++ ..++|| +|-.=||..|+|.+.. .++...|+||.|.-+....
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd--~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~~ 67 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCG--KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPAE 67 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECT--TTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSCH
T ss_pred CcCCCCcCccCCcccCCCeEECC--CCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCHH
Confidence 57888876 23 499999 9999999999998742 1223589999999776543
No 93
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.04 E-value=0.0097 Score=57.65 Aligned_cols=53 Identities=13% Similarity=0.175 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhc---------CCCcCCCCCcchhHHHHhhhc
Q 003750 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFG---------SSVFFSGRTAIDLKDKWRNMC 791 (798)
Q Consensus 734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~---------~~vF~~~RT~VDLKDKWRNL~ 791 (798)
....||.+|...|+.||.||| .|+|..|..+- .+.|...++++.|+.+--.|.
T Consensus 133 ~~~~W~~~~D~~LL~Gi~k~G-----~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll 194 (211)
T 4b4c_A 133 FDIDWGKEDDSNLLIGIYEYG-----YGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLI 194 (211)
T ss_dssp SSSCCCHHHHHHHHHHHHHHC-----TTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHC-----cCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHH
Confidence 345799999999999999999 99999999752 122235677888988854443
No 94
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.80 E-value=0.0069 Score=54.50 Aligned_cols=50 Identities=24% Similarity=0.444 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCC-CcCCCCCcchhHHHHhhhcc
Q 003750 736 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSS-VFFSGRTAIDLKDKWRNMCK 792 (798)
Q Consensus 736 r~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~-vF~~~RT~VDLKDKWRNL~K 792 (798)
..||.||++.|.+.+++|+ .+|--|.+.|.. -| ..||-=|||++|-.+++
T Consensus 31 ~~WT~eETd~LfdLc~~fd------lRw~vI~DRy~~~~~-~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFD------LRFVVIHDRYDHQQF-KKRSVEDLKERYYHICA 81 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT------TCHHHHHHHCCTTTS-CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC------CCeEEEeeccccCCC-CCCCHHHHHHHHHHHHH
Confidence 4799999999999999999 799999998752 22 58999999999966654
No 95
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=95.76 E-value=0.0027 Score=54.40 Aligned_cols=61 Identities=23% Similarity=0.333 Sum_probs=44.4
Q ss_pred CCCCCCCHHHHHHHHHHHHh----hcCCCCCccchhhhhhhcCC-CcCCCCCcchhHHHHhhhccCCC
Q 003750 733 RKKVPWTAKEEEILKKGVQK----FASVDDRIIPWKKILEFGSS-VFFSGRTAIDLKDKWRNMCKGSP 795 (798)
Q Consensus 733 Rkrr~WT~EEeeaL~eGVqK----yGp~~~~~G~WkkIL~~~~~-vF~~~RT~VDLKDKWRNL~Kks~ 795 (798)
++...||.+|+.+|+..... |...+-....|..|...-.. -| .||+.+.++||.||.+..-
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~--~rs~~qC~~K~~nL~k~Yk 67 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGF--DRSPDMCTDKWRNLLKEFK 67 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHHHH
Confidence 45678999999999999864 32111235589999875211 14 6999999999999987643
No 96
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=95.74 E-value=0.0017 Score=71.73 Aligned_cols=46 Identities=26% Similarity=0.706 Sum_probs=36.8
Q ss_pred ccccccccCC----CCcEEecCCCCCcccccccccCCCCccCC-CCCccCcccc
Q 003750 423 EQNLCVKCNK----DGQLLSCSSSTCPLAVHENCLGFPVKFDE-KGNFHCPFCA 471 (798)
Q Consensus 423 ~~d~C~~C~~----~GqLLcCD~~gCP~ayH~~Clg~~~~~~p-eGdW~CP~C~ 471 (798)
..-+| .|+. +|..+.|| .|.-=||..|+|......+ .+.||||.|.
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~ 86 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECD--ICKDWFHGSCVGVEEHHAVDIDLYHCPNCA 86 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBT--TTCCEEEHHHHTCCGGGGGGEEEBCCHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEcc--CCCCceeeeecCcCcccccCCCEEECCCCc
Confidence 33456 8886 57899999 9999999999999864322 3789999996
No 97
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=95.68 E-value=0.0028 Score=53.57 Aligned_cols=41 Identities=24% Similarity=0.652 Sum_probs=33.5
Q ss_pred ccCC----CCcEEecCCCCCcccccccccCCCCccCC-CCCccCcccc
Q 003750 429 KCNK----DGQLLSCSSSTCPLAVHENCLGFPVKFDE-KGNFHCPFCA 471 (798)
Q Consensus 429 ~C~~----~GqLLcCD~~gCP~ayH~~Clg~~~~~~p-eGdW~CP~C~ 471 (798)
.|+. +|..|.|| .|..=||..|+|......+ ...|+||.|.
T Consensus 14 iC~~~~~~~~~MI~Cd--~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~ 59 (75)
T 3kqi_A 14 VCRLPYDVTRFMIECD--ACKDWFHGSCVGVEEEEAPDIDIYHCPNCE 59 (75)
T ss_dssp TTTEECCTTSCEEECT--TTCCEEEHHHHTCCTTTGGGBSSCCCHHHH
T ss_pred ECCCcCCCCCCEEEcC--CCCCCEecccccccccccCCCCEEECCCCc
Confidence 6765 46899999 8999999999999865333 2679999996
No 98
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=95.05 E-value=0.0048 Score=60.00 Aligned_cols=77 Identities=17% Similarity=0.368 Sum_probs=54.3
Q ss_pred ccccccchhhh---hccccchhhhccCCccccCCCcccccccccCCCCcEEecCCCCCcccccccccCC----C--CccC
Q 003750 390 YHNDRIDVAVK---KSHFLSSQAALGHDSLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGF----P--VKFD 460 (798)
Q Consensus 390 y~~~~~~~~~~---k~~fLsSq~t~~~ds~~~s~~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~----~--~~~~ 460 (798)
+.+-.+.+.|= |..|++.....+.|- .+.+|..|+.||+||+||...|+.+|=..||.. . ....
T Consensus 49 ~~HPlf~v~lC~~Ck~~y~e~~f~~DeDG-------~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~ 121 (159)
T 3a1b_A 49 LEHPLFVGGMCQNCKNCFLECAYQYDDDG-------YQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAI 121 (159)
T ss_dssp EECSSBSSEECHHHHHHHHHHTTCBCTTS-------SBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHH
T ss_pred ccCCCccchhhHHHHHHHhhcccccCCCC-------CcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHh
Confidence 44444444442 344666655554443 367999999999999999889999999999743 2 2335
Q ss_pred CCCCccCcccccc
Q 003750 461 EKGNFHCPFCAYT 473 (798)
Q Consensus 461 peGdW~CP~C~y~ 473 (798)
.+..|.|=.|.=+
T Consensus 122 ~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 122 KEDPWNCYMCGHK 134 (159)
T ss_dssp TSSSCCCTTTCSS
T ss_pred ccCCCEEEecCCc
Confidence 6889999999733
No 99
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.96 E-value=0.011 Score=62.44 Aligned_cols=57 Identities=19% Similarity=0.259 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhh-------cCCCcCCCCCcchhHHHHhhhcc
Q 003750 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEF-------GSSVFFSGRTAIDLKDKWRNMCK 792 (798)
Q Consensus 734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~-------~~~vF~~~RT~VDLKDKWRNL~K 792 (798)
+.+.||++|...|+-++.+|| =+..|.|..|... -++.|+..||++.|..+-..|.+
T Consensus 211 k~k~yteeEDRfLL~~l~k~G--~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~ 274 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLG--FDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLIT 274 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhc--CCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHH
Confidence 456899999999999999999 1122999999742 35566799999999999888765
No 100
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.72 E-value=0.068 Score=44.09 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750 733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 794 (798)
Q Consensus 733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks 794 (798)
.....||++|.+...+|+.+|| ..|..|... |...||..|+..-|-..+|..
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yG------Kdf~~I~~~----~v~~Kt~~~~v~fYY~wKkt~ 58 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYG------KNFFRIRKE----LLPNKETGELITFYYYWKKTS 58 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTC------SCHHHHHHH----SCTTSCHHHHHHHHHHHHCSS
T ss_pred cCCCCcCHHHHHHHHHHHHHhC------ccHHHHHHH----HcCCCcHHHHHHHHhcccCCC
Confidence 3567999999999999999999 489999863 346899999998887655543
No 101
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=93.80 E-value=0.0087 Score=64.89 Aligned_cols=51 Identities=25% Similarity=0.531 Sum_probs=42.2
Q ss_pred ccccccccCCCCcEEecCCCCCcccccccccCCCC------ccCCCCCccCcccccc
Q 003750 423 EQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPV------KFDEKGNFHCPFCAYT 473 (798)
Q Consensus 423 ~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~------~~~peGdW~CP~C~y~ 473 (798)
.+.+|..|+.||+||+||...|+++|=..||..-. .......|.|=.|.=+
T Consensus 92 ~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 92 YQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 36799999999999999999999999999985421 2344689999999744
No 102
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=93.65 E-value=0.0083 Score=65.90 Aligned_cols=45 Identities=22% Similarity=0.571 Sum_probs=35.8
Q ss_pred ccccCC----CCcEEecCCCCCcccccccccCCCCccCC-CCCccCcccccc
Q 003750 427 CVKCNK----DGQLLSCSSSTCPLAVHENCLGFPVKFDE-KGNFHCPFCAYT 473 (798)
Q Consensus 427 C~~C~~----~GqLLcCD~~gCP~ayH~~Clg~~~~~~p-eGdW~CP~C~y~ 473 (798)
++.|+. +|..++|| .|.-=||..|+|.+....+ .+.|+||.|.-+
T Consensus 7 yCiC~~~~d~~~~MIqCD--~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 7 YCLCRLPYDVTRFMIECD--MCQDWFHGSCVGVEEEKAADIDLYHCPNCEVL 56 (447)
T ss_dssp ETTTTEECCTTSCEEECT--TTCCEEEHHHHTCCHHHHTTEEECCCHHHHHH
T ss_pred EEeCCCcCCCCCCeEEcC--CCCcccccccCCcCcccccCCCEEECCCCccc
Confidence 446765 58899999 9999999999999854332 378999999643
No 103
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=93.48 E-value=0.11 Score=43.71 Aligned_cols=49 Identities=12% Similarity=0.296 Sum_probs=41.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhh
Q 003750 732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNM 790 (798)
Q Consensus 732 RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL 790 (798)
|.....||++|.+...+|+.+|| ..|..|... |.++||..|+..-|-..
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yG------Kdf~~I~~~----~v~~Kt~~~~v~fYY~w 53 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYG------KDFNDIRQD----FLPWKSLTSIIEYYYMW 53 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTC------SCHHHHHHT----TCSSSCHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHhC------ccHHHHHHH----HcCCCCHHHHHHHHHhh
Confidence 56677999999999999999999 479999862 34789999999877743
No 104
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=93.30 E-value=0.019 Score=51.15 Aligned_cols=35 Identities=29% Similarity=0.612 Sum_probs=28.3
Q ss_pred cEEecCCCCCcccccccccCCCCccC----CCCCccCcccc
Q 003750 435 QLLSCSSSTCPLAVHENCLGFPVKFD----EKGNFHCPFCA 471 (798)
Q Consensus 435 qLLcCD~~gCP~ayH~~Clg~~~~~~----peGdW~CP~C~ 471 (798)
.||.|+ .|...||..|+++..... ..+.|+||.|.
T Consensus 74 ~m~~C~--~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~ 112 (117)
T 4bbq_A 74 KLMECC--ICNEIVHPGCLQMDGEGLLNEELPNCWECPKCY 112 (117)
T ss_dssp SCEEET--TTCCEECGGGCCSCCCCEECSSSSSEEECTTTC
T ss_pred ceEEee--ecCCeEECCCCCCCccccccccCCCCeECCCCc
Confidence 389999 999999999999874332 23459999996
No 105
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=93.18 E-value=0.043 Score=59.40 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=46.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhh-------cCCCcCCCCCcchhHHHHhhhccC
Q 003750 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEF-------GSSVFFSGRTAIDLKDKWRNMCKG 793 (798)
Q Consensus 734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~-------~~~vF~~~RT~VDLKDKWRNL~Kk 793 (798)
+.+.||++|...|+-+|.+|| =+..|.|..|+.. -++.|+..||++.|..+-..|.+.
T Consensus 227 k~k~yteeEDRfLL~~l~k~G--~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~ 291 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYG--LDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQC 291 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHT--TCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhc--cCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 345899999999999999999 1122999999753 255667999999999999888653
No 106
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.89 E-value=0.14 Score=43.30 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=45.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhH---HHHhhhccC
Q 003750 732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLK---DKWRNMCKG 793 (798)
Q Consensus 732 RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLK---DKWRNL~Kk 793 (798)
+++|.+||+|.-+..+.+|+++|. +...|+.|++.-. -.+.|..++| .|||...++
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~---~~AtPk~Il~~M~---v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGV---ERAVPKKILDLMN---VDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCT---TTCCHHHHHHHHC---CTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCC---CCCCcHHHHHHcC---CCCCCHHHHHHHHHHHHHHHHc
Confidence 578899999999999999999993 2567999998644 2578888888 678876654
No 107
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=92.78 E-value=0.13 Score=42.20 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCC---CccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750 735 KVPWTAKEEEILKKGVQKFASVDD---RIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 792 (798)
Q Consensus 735 rr~WT~EEeeaL~eGVqKyGp~~~---~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K 792 (798)
|.+||+||+.+|++=|.+|.+.|. +..-|+.|.+. . .+.+|--..+|+|+.-.+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~-~---~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKS-S---LTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHS-C---SSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHh-H---CCCCCHHHHHHHHHHHcc
Confidence 679999999999999999942211 25679988771 1 268999999999987543
No 108
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=92.69 E-value=0.049 Score=61.23 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=30.4
Q ss_pred CcEEecCCCCCcccccccccCCCCccC-CCCCccCcccc
Q 003750 434 GQLLSCSSSTCPLAVHENCLGFPVKFD-EKGNFHCPFCA 471 (798)
Q Consensus 434 GqLLcCD~~gCP~ayH~~Clg~~~~~~-peGdW~CP~C~ 471 (798)
.-.++|| +|--=||..|+|.+.... .-+.||||.|.
T Consensus 56 ~~mI~CD--~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~ 92 (528)
T 3pur_A 56 FQWIGCD--SCQTWYHFLCSGLEQFEYYLYEKFFCPKCV 92 (528)
T ss_dssp TSEEECT--TTCCEEEGGGTTCCGGGTTTEEECCCTTTH
T ss_pred CCEEECC--CCCcCCCCcCCCCChhHhcCCCeEECcCCc
Confidence 4588999 999999999999986443 34899999996
No 109
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=91.87 E-value=0.16 Score=56.63 Aligned_cols=51 Identities=14% Similarity=0.383 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750 733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 794 (798)
Q Consensus 733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks 794 (798)
+...+||.+|.+.++.||++|| ..|..|-+. ...||..+.|.-|.+..|+.
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG------kdw~~IA~~-----VgTKT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG------RDFQAISDV-----IGNKSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT------TCHHHHHHH-----HSSCCHHHHHHHHHHTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC------cCHHHHHHH-----hCCCCHHHHHHHHHHHHHHh
Confidence 5677999999999999999999 489999984 25799999999887766543
No 110
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.65 E-value=0.13 Score=53.35 Aligned_cols=29 Identities=34% Similarity=0.580 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhh
Q 003750 736 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEF 769 (798)
Q Consensus 736 r~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~ 769 (798)
..|+.+|+..|+.||-+|| .|+|..|..+
T Consensus 169 c~W~~~dD~~LLvGIykyG-----yG~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYG-----YGSWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHC-----TTCHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHc-----CCcHHHHhcC
Confidence 4799999999999999999 9999999975
No 111
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=90.30 E-value=0.13 Score=46.84 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=34.4
Q ss_pred cccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccC
Q 003750 426 LCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHC 467 (798)
Q Consensus 426 ~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~C 467 (798)
.|..|++... +.|. .||.+||..|+.......+.+.|+|
T Consensus 60 ~C~~C~k~~~-~~C~--~Cp~sfC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 60 QCDECSSAAV-SFCE--FCPHSFCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp BCTTTCSBCC-EECS--SSSCEECTTTCTTSCEECTTTTCEE
T ss_pred CCCcCCCCCC-cCcC--CCCcchhhhccCCcceecCCCCcee
Confidence 6889998877 6788 9999999999999988888888986
No 112
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=89.40 E-value=0.32 Score=47.04 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=40.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhh
Q 003750 732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNM 790 (798)
Q Consensus 732 RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL 790 (798)
|.....||..|...|+.++.|||. -.++|..|..... +.++|.-+|++=++.+
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~---~~~r~~~I~~da~---L~~Ks~~~v~~y~~~f 56 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGG---PLERLDAIARDAE---LVDKSETDLRRLGELV 56 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSS---GGGCHHHHHHHTT---CTTSCHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCC---chhHHHHHHHHhc---cCCCCHHHHHHHHHHH
Confidence 346779999999999999999992 2478999998765 3689999999855544
No 113
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=88.64 E-value=0.19 Score=43.71 Aligned_cols=48 Identities=23% Similarity=0.448 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhh
Q 003750 735 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRN 789 (798)
Q Consensus 735 rr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRN 789 (798)
-..||.+|..+|..++.+|+ .+-.-+|.+|... .++||.-+++..|..
T Consensus 20 s~~WT~eE~K~FE~ALa~yp--~~tpdRWekIA~~-----VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTN--KDTPDRWKKVAQY-----VKGRTPEEVKKHYEL 67 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSC--SSCCSSSTTTGGG-----SCSSCHHHHHGGGC-
T ss_pred CCCCCHHHHHHHHHHHHHCC--CCCCcHHHHHHHH-----cCCCCHHHHHHHHHH
Confidence 44799999999999999997 2346699999974 358999999988753
No 114
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=87.58 E-value=0.73 Score=40.84 Aligned_cols=50 Identities=16% Similarity=0.233 Sum_probs=40.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhcc
Q 003750 732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 792 (798)
Q Consensus 732 RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~K 792 (798)
|.....||++|.+...+|+.+|| .+|..|.. |.+.||..++-.-|-..+|
T Consensus 40 r~~~~~WT~eE~~~F~~~~~~~g------K~F~~Ia~-----~l~~Kt~~~cV~~YY~~Kk 89 (94)
T 4a69_C 40 RQVMNMWSEQEKETFREKFMQHP------KNFGLIAS-----FLERKTVAECVLYYYLTKK 89 (94)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHST------TCHHHHHH-----TCTTCCHHHHHHHHHHHSC
T ss_pred cCCCCCCCHHHHHHHHHHHHHcC------CCHHHHHH-----HcCCCCHHHHHHHHhcccc
Confidence 34567999999999999999999 58999965 4579999998866654433
No 115
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=84.12 E-value=0.31 Score=42.66 Aligned_cols=34 Identities=24% Similarity=0.662 Sum_probs=28.5
Q ss_pred EEecCCCCCcccccccccCCCC-------ccCCCCCccCcccc
Q 003750 436 LLSCSSSTCPLAVHENCLGFPV-------KFDEKGNFHCPFCA 471 (798)
Q Consensus 436 LLcCD~~gCP~ayH~~Clg~~~-------~~~peGdW~CP~C~ 471 (798)
.+.|| .|--=||.+|++.+. .++++-.|.||.|.
T Consensus 2 mi~c~--~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~ 42 (140)
T 2ku7_A 2 MMQCG--KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCT 42 (140)
T ss_dssp CCCCS--CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCT
T ss_pred ccccc--cCCCccCCcccccCHHHHHHHhhccccceeeCcccc
Confidence 47899 999999999999873 34556789999996
No 116
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=83.64 E-value=0.24 Score=42.78 Aligned_cols=57 Identities=12% Similarity=0.242 Sum_probs=47.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCCCCCC
Q 003750 733 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSPRSK 798 (798)
Q Consensus 733 Rkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks~k~~ 798 (798)
-.-..||.||+..++...++-|+. .-.|+.|... + +||.-+++++++.|.+...|||
T Consensus 12 e~vvlWTReeDR~IL~~cq~~G~s---~~tfa~iA~~-----L-nks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 12 EIIILWTRNDDRVILLECQKRGPS---SKTFAYLAAK-----L-DKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 356789999999999999999953 4578777752 3 6999999999999999988876
No 117
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=75.88 E-value=3.2 Score=43.19 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhc
Q 003750 734 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC 791 (798)
Q Consensus 734 krr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~ 791 (798)
++..||+.|+..|++++.|||. -.++|..|..+.. +..+....|+.=+..|.
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~---~~~R~e~I~~dA~---L~~ks~~~i~~~~~~li 53 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGN---LKEILDELIADGT---LPVKSFEKYGETYDEMM 53 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSS---CTTCHHHHHHTTS---SCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHhcc---cccCCHHHHHHHHHHHH
Confidence 3568999999999999999993 3679999998765 46899999988777664
No 118
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.52 E-value=1.1 Score=38.23 Aligned_cols=54 Identities=26% Similarity=0.567 Sum_probs=35.6
Q ss_pred CCcccccccccCCCC----cEE-ecCCCCCcccccccccCCCCccCCCCCccCccccccch
Q 003750 420 GWTEQNLCVKCNKDG----QLL-SCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLS 475 (798)
Q Consensus 420 ~~~~~d~C~~C~~~G----qLL-cCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ka 475 (798)
...+.+.|++|..++ .|+ -|.-.|.-..||..||-.=... .+...||.|.+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~--~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS--SDTRCCELCKYEFI 69 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH--HCCSBCSSSCCBCC
T ss_pred CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh--CCCCCCCCCCCeee
Confidence 344567899998643 344 2422244599999999764322 35689999987644
No 119
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=69.40 E-value=4.8 Score=41.70 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=23.3
Q ss_pred cchhhhhhhcCCCcCCCCCcchhHHHHhhhccC
Q 003750 761 IPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 793 (798)
Q Consensus 761 G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kk 793 (798)
+.|+.|.+.+ +.||.+..+|+||.+++.
T Consensus 172 ~~fk~ia~~~-----P~HT~~SWRdRyrKfl~~ 199 (246)
T 1ign_A 172 EFFKHFAEEH-----AAHTENAWRDRFRKFLLA 199 (246)
T ss_dssp THHHHHHHHT-----TTSCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHC-----CCCChhhHHHHHHHHHhh
Confidence 3699999853 589999999999988754
No 120
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=69.10 E-value=2.2 Score=36.65 Aligned_cols=31 Identities=32% Similarity=0.828 Sum_probs=23.0
Q ss_pred CcccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCcccc
Q 003750 421 WTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA 471 (798)
Q Consensus 421 ~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~ 471 (798)
-.+..-|.+|+.+..|- |- || +|+-||+.||
T Consensus 5 ~ee~pWC~ICneDAtlr-C~--gC-----------------dgDLYC~rC~ 35 (67)
T 2d8v_A 5 SSGLPWCCICNEDATLR-CA--GC-----------------DGDLYCARCF 35 (67)
T ss_dssp CCCCSSCTTTCSCCCEE-ET--TT-----------------TSEEECSSHH
T ss_pred CcCCCeeEEeCCCCeEE-ec--CC-----------------CCceehHHHH
Confidence 34455799999998754 44 44 3899999998
No 121
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=68.61 E-value=6.6 Score=35.67 Aligned_cols=55 Identities=15% Similarity=0.286 Sum_probs=45.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHHHhhhccCC
Q 003750 732 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 794 (798)
Q Consensus 732 RRkrr~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDKWRNL~Kks 794 (798)
..+-.-||.+|...++...++-|+. .-.|+.|... +.+|+.-+++++++.|.|..
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s---~~tFa~iA~~-----L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQ---PHTFSVISQQ-----LGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSC---TTTHHHHHHH-----HSSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeccccCHHHHHHHHhcCCC---hhHHHHHHHH-----HccCCHHHHHHHHHHHHHHH
Confidence 4567799999999999999999953 5689988874 25799999999999988753
No 122
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=60.19 E-value=5 Score=35.08 Aligned_cols=34 Identities=26% Similarity=0.730 Sum_probs=28.0
Q ss_pred CCCcccccccccCC--CCcEEecCCCCCcccccccccC
Q 003750 419 SGWTEQNLCVKCNK--DGQLLSCSSSTCPLAVHENCLG 454 (798)
Q Consensus 419 s~~~~~d~C~~C~~--~GqLLcCD~~gCP~ayH~~Clg 454 (798)
+.| .-.|..|+. .|--+-|+...|..+||..|.-
T Consensus 14 ~R~--~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 14 ARW--KLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCC--CCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHH
T ss_pred HHh--cCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHH
Confidence 345 457999985 3889999989999999999963
No 123
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=55.59 E-value=6.1 Score=31.92 Aligned_cols=49 Identities=18% Similarity=0.388 Sum_probs=31.9
Q ss_pred CCCcccccccccCC---CCcEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750 419 SGWTEQNLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 419 s~~~~~d~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
........|.+|.. .+..+.-- .|--.||..|+..-.. ....||.|...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~--~C~H~fc~~Ci~~~~~----~~~~CP~Cr~~ 61 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQL--PCNHLFHDSCIVPWLE----QHDSCPVCRKS 61 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEEC--TTSCEEETTTTHHHHT----TTCSCTTTCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEe--CCCCeecHHHHHHHHH----cCCcCcCcCCc
Confidence 34556778999954 44333222 4778999999975432 23589999754
No 124
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=53.38 E-value=3.5 Score=32.61 Aligned_cols=48 Identities=21% Similarity=0.450 Sum_probs=31.4
Q ss_pred CCcccccccccC---CCCcEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750 420 GWTEQNLCVKCN---KDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 420 ~~~~~d~C~~C~---~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
+-.....|.+|. ..|.-+..- .|--.||..|+..-... ...||.|...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~--~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~ 60 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRL--PCMHLFHQVCVDQWLIT----NKKCPICRVD 60 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEEC--TTSCEEEHHHHHHHHHH----CSBCTTTCSB
T ss_pred cCCCCCCCeeCCccccCCCcEEEe--CCCCHHHHHHHHHHHHc----CCCCcCcCcc
Confidence 344567899994 344434443 68899999999754322 2359999754
No 125
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=51.86 E-value=0.97 Score=36.72 Aligned_cols=50 Identities=22% Similarity=0.435 Sum_probs=33.2
Q ss_pred ccccccccCCCCc--E-EecCCCCCcccccccccCCCCccCCCCCccCccccccc
Q 003750 423 EQNLCVKCNKDGQ--L-LSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTL 474 (798)
Q Consensus 423 ~~d~C~~C~~~Gq--L-LcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~k 474 (798)
+.+.|++|..++. | +-|.=+|.-..||..||..=.. ..|++.||.|.+..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~--~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLT--ISRNTACQICGVVY 57 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHH--HHTCSBCTTTCCBC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHH--hCCCCccCCCCCee
Confidence 4568999975332 3 3332225555999999986432 34789999998764
No 126
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=47.74 E-value=6.3 Score=29.02 Aligned_cols=12 Identities=17% Similarity=0.747 Sum_probs=10.0
Q ss_pred CCCccCcccccc
Q 003750 462 KGNFHCPFCAYT 473 (798)
Q Consensus 462 eGdW~CP~C~y~ 473 (798)
.|||.||.|.+-
T Consensus 4 ~gDW~C~~C~~~ 15 (33)
T 2k1p_A 4 ANDWQCKTCSNV 15 (33)
T ss_dssp SSSCBCSSSCCB
T ss_pred CCCcccCCCCCc
Confidence 699999999743
No 127
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=47.08 E-value=5 Score=29.37 Aligned_cols=12 Identities=17% Similarity=0.545 Sum_probs=10.1
Q ss_pred CCCccCcccccc
Q 003750 462 KGNFHCPFCAYT 473 (798)
Q Consensus 462 eGdW~CP~C~y~ 473 (798)
.|||.||.|.+-
T Consensus 3 ~gDW~C~~C~~~ 14 (32)
T 2lk0_A 3 FEDWLCNKCCLN 14 (32)
T ss_dssp CSEEECTTTCCE
T ss_pred CCCCCcCcCcCC
Confidence 599999999754
No 128
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=42.40 E-value=5.3 Score=34.54 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=21.4
Q ss_pred CCcccccccccCCCCccC-CCCCccCccccc
Q 003750 443 TCPLAVHENCLGFPVKFD-EKGNFHCPFCAY 472 (798)
Q Consensus 443 gCP~ayH~~Clg~~~~~~-peGdW~CP~C~y 472 (798)
.|--.||..||..-.... ..+...||.|..
T Consensus 60 ~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~ 90 (114)
T 1v87_A 60 KCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90 (114)
T ss_dssp SSCCEECHHHHHHHHHHTCCSSCCBCTTTCC
T ss_pred CCCCcccHHHHHHHHHcccCCCCCcCCCCCC
Confidence 566899999998543221 146789999974
No 129
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=42.24 E-value=20 Score=35.52 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=29.5
Q ss_pred ccCCCCc----EEecCCCCCcccccccccCCCCccCCCCC----ccCcccccc
Q 003750 429 KCNKDGQ----LLSCSSSTCPLAVHENCLGFPVKFDEKGN----FHCPFCAYT 473 (798)
Q Consensus 429 ~C~~~Gq----LLcCD~~gCP~ayH~~Clg~~~~~~peGd----W~CP~C~y~ 473 (798)
-|+++|+ -|-|+ .|-.-||..|+.......-.|+ |.|-.|.-.
T Consensus 9 YCG~~~~~~~~mLqC~--~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~ 59 (177)
T 3rsn_A 9 DEENGRQLGEVELQCG--ICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHS 59 (177)
T ss_dssp --CTTCCTTSCEEECT--TTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTT
T ss_pred EcCCCCCCCceeEeec--cccceecHHHhcccccCccccceeEEEEccccCCC
Confidence 3888887 57777 8999999999986532222345 349999643
No 130
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.01 E-value=11 Score=31.34 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=37.3
Q ss_pred CccccCCCcccccccccCC---CCcEEecCCCCCcccccccccCCC---Cc-----cCCCCCccCcccccc
Q 003750 414 DSLATSGWTEQNLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFP---VK-----FDEKGNFHCPFCAYT 473 (798)
Q Consensus 414 ds~~~s~~~~~d~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~---~~-----~~peGdW~CP~C~y~ 473 (798)
.+.....+.....|..|++ .|+.|.-. -..||..|+... .. +..+|..||..|..+
T Consensus 5 ~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~----~~~wH~~CF~C~~C~~~L~~~~~~~~g~~yC~~~y~~ 71 (80)
T 2dj7_A 5 SSGKPIKIRGPSHCAGCKEEIKHGQSLLAL----DKQWHVSCFKCQTCSVILTGEYISKDGVPYCESDYHA 71 (80)
T ss_dssp CCCCCCCCSSCSCCTTTCCCCSSSCCEEET----TEEECTTTCBCSSSCCBCSSCCEEETTEEECTTHHHH
T ss_pred cCCCCcCCCCCCCCcCcCCeeCCCeEEEEC----CcccccccCCcCcCCCCcCCCeEEECCEEECHHHHHH
Confidence 3334456667789999998 57766544 257888887764 11 234678889888643
No 131
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=40.17 E-value=10 Score=31.72 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=32.7
Q ss_pred CCcccccccccCC--CCcEEecCCCCCcccccccccCCC---Ccc------CCCCCccCcccccc
Q 003750 420 GWTEQNLCVKCNK--DGQLLSCSSSTCPLAVHENCLGFP---VKF------DEKGNFHCPFCAYT 473 (798)
Q Consensus 420 ~~~~~d~C~~C~~--~GqLLcCD~~gCP~ayH~~Clg~~---~~~------~peGdW~CP~C~y~ 473 (798)
.......|..|++ .|+.|.-. + ..||..|+.+. ..+ .-+|..||..|..+
T Consensus 21 ~~~~~~~C~~C~~~I~~~~~~a~--~--~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 81 (89)
T 1x64_A 21 SAQRMPLCDKCGSGIVGAVVKAR--D--KYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARA 81 (89)
T ss_dssp CCCSCCBCTTTCCBCCSCCEESS--S--CEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHH
T ss_pred CCCcCCCcccCCCEecccEEEEC--C--ceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHH
Confidence 4455678999997 45555444 3 68998888764 122 23577888888643
No 132
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.92 E-value=5.6 Score=32.10 Aligned_cols=46 Identities=37% Similarity=0.720 Sum_probs=32.2
Q ss_pred cccccccccC---CCCcEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750 422 TEQNLCVKCN---KDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 422 ~~~d~C~~C~---~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
.....|.+|. ..|+.+..- .|--.||..|+..-.. ....||.|...
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l--~C~H~fh~~Ci~~w~~----~~~~CP~Cr~~ 69 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVL--PCNHEFHAKCVDKWLK----ANRTCPICRAD 69 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEE--TTTEEEETTHHHHHHH----HCSSCTTTCCC
T ss_pred CCCCCCeECCcccCCCCeEEEE--CCCCHhHHHHHHHHHH----cCCcCcCcCCc
Confidence 4567899998 456544444 5779999999976432 23579999743
No 133
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=39.64 E-value=12 Score=28.00 Aligned_cols=45 Identities=22% Similarity=0.574 Sum_probs=30.1
Q ss_pred ccccccccCCC---Cc-EEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750 423 EQNLCVKCNKD---GQ-LLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 423 ~~d~C~~C~~~---Gq-LLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
+...|..|... |+ +.... .|--.||..|+..-.. ....||.|...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~Ci~~w~~----~~~~CP~Cr~~ 52 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLP--RCGHGFHAECVDMWLG----SHSTCPLCRLT 52 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECS--SSCCEECTTHHHHTTT----TCCSCSSSCCC
T ss_pred CCCcCccCCccccCCCceEECC--CCCCcccHHHHHHHHH----cCCcCcCCCCE
Confidence 45678888754 22 33333 5788999999975542 35689999754
No 134
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.83 E-value=6.7 Score=31.37 Aligned_cols=50 Identities=26% Similarity=0.527 Sum_probs=32.6
Q ss_pred cCCCcccccccccCCC---CcEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750 418 TSGWTEQNLCVKCNKD---GQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 418 ~s~~~~~d~C~~C~~~---GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
..+......|.+|... +..+.-- .|--.||..|+..-... ...||.|...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~--~C~H~f~~~Ci~~~~~~----~~~CP~Cr~~ 61 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGIC--PCKHAFHRKCLIKWLEV----RKVCPLCNMP 61 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEE--TTTEEEEHHHHHHHHHH----CSBCTTTCCB
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEc--CCCCEecHHHHHHHHHc----CCcCCCcCcc
Confidence 3455667889999764 3333211 57789999999754322 2379999754
No 135
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.54 E-value=8.3 Score=29.94 Aligned_cols=49 Identities=22% Similarity=0.432 Sum_probs=33.2
Q ss_pred CCCcccccccccCCC-------CcEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750 419 SGWTEQNLCVKCNKD-------GQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 419 s~~~~~d~C~~C~~~-------GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
........|.+|... ++++.-- .|--.||..|+..-... ...||.|...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~--~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 65 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVST--ECGHVFCSQCLRDSLKN----ANTCPTCRKK 65 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEEC--SSSCEEEHHHHHHHHHH----CSSCTTTCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeC--CCCChhcHHHHHHHHHc----CCCCCCCCCc
Confidence 345567789999863 4444444 67789999999754321 4579999743
No 136
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.22 E-value=15 Score=29.79 Aligned_cols=18 Identities=17% Similarity=0.678 Sum_probs=14.0
Q ss_pred CCccCCCCCccCcccccc
Q 003750 456 PVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 456 ~~~~~peGdW~CP~C~y~ 473 (798)
+....++|.|.||.|.|-
T Consensus 3 s~~~~~~~~W~C~~CT~~ 20 (53)
T 2d9g_A 3 SGSSGDEGYWDCSVCTFR 20 (53)
T ss_dssp CCCSSCCCCEECSSSCCE
T ss_pred CCCCCCCCCcCCCCCccC
Confidence 344567899999999875
No 137
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=34.30 E-value=8.4 Score=43.15 Aligned_cols=40 Identities=10% Similarity=0.316 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCcCCCCCcchhHHH
Q 003750 736 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDK 786 (798)
Q Consensus 736 r~WT~EEeeaL~eGVqKyGp~~~~~G~WkkIL~~~~~vF~~~RT~VDLKDK 786 (798)
..||.+|...+.+||.+|| ..|..|.. |+++||.-++-.-
T Consensus 190 d~WT~eE~~lFe~al~~yG------KdF~~I~~-----~lp~Ksv~e~V~y 229 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHG------KTFHRIQQ-----MLPDKSIASLVKF 229 (482)
T ss_dssp ---------------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcC------ccHHHHHH-----HcCCCCHHHHHHH
Confidence 4899999999999999999 68988875 3466776666433
No 138
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.35 E-value=16 Score=28.89 Aligned_cols=52 Identities=21% Similarity=0.380 Sum_probs=33.7
Q ss_pred CCCcccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750 419 SGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 419 s~~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
....+...|.+|...=.--.- ..|--.||..|+..-.. ...+...||.|...
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~--~~CgH~fC~~Ci~~~~~-~~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVT--IDCGHNFCLKCITQIGE-TSCGFFKCPLCKTS 66 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEE--CTTCCEEEHHHHHHHCS-SSCSCCCCSSSCCC
T ss_pred HhCccCCEeccCCcccCCeEE--cCCCChhhHHHHHHHHH-cCCCCCCCCCCCCc
Confidence 345667789999863221111 15778899999975432 12467899999754
No 139
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=32.58 E-value=10 Score=28.41 Aligned_cols=45 Identities=22% Similarity=0.524 Sum_probs=29.9
Q ss_pred ccccccccCCC----CcEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750 423 EQNLCVKCNKD----GQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 423 ~~d~C~~C~~~----GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
....|.+|... ++....- .|--.||..|+..-... ...||.|...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~--~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 52 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVL--PCGHLLHRTCYEEMLKE----GYRCPLCSGP 52 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEEC--TTSCEEETTHHHHHHHH----TCCCTTSCCS
T ss_pred CCCcCcccChhhcCCCcCeEec--CCCCcccHHHHHHHHHc----CCcCCCCCCc
Confidence 35678899753 2334444 67789999999754322 1679999753
No 140
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.12 E-value=11 Score=30.27 Aligned_cols=51 Identities=18% Similarity=0.361 Sum_probs=34.0
Q ss_pred cCCCcccccccccCCCC---cEEecCCCCCcccccccccCCCCcc--CCCCCccCcccccc
Q 003750 418 TSGWTEQNLCVKCNKDG---QLLSCSSSTCPLAVHENCLGFPVKF--DEKGNFHCPFCAYT 473 (798)
Q Consensus 418 ~s~~~~~d~C~~C~~~G---qLLcCD~~gCP~ayH~~Clg~~~~~--~peGdW~CP~C~y~ 473 (798)
..+......|.+|...= .++ .|--.||..|+..-... ...+...||.|...
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~-----~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~ 68 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSA-----DCNHSFCRACITLNYESNRNTDGKGNCPVCRVP 68 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEEC-----TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCC
T ss_pred HHhCccCCCCcCCChhhCcceeC-----CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCc
Confidence 34566777899997632 233 57788999999753221 23468999999754
No 141
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=28.52 E-value=15 Score=31.05 Aligned_cols=46 Identities=20% Similarity=0.509 Sum_probs=31.4
Q ss_pred cccccccccCC---CCcEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750 422 TEQNLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 422 ~~~d~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
..+..|.+|.. .|..+..- .|--.||..|+..-.. ....||.|...
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l--~C~H~Fh~~Ci~~wl~----~~~~CP~Cr~~ 86 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATEL--PCHHYFHKPCVSIWLQ----KSGTCPVCRCM 86 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEE--TTTEEEEHHHHHHHHT----TTCBCTTTCCB
T ss_pred CCCCCCcccChhhcCCCcEEec--CCCChHHHHHHHHHHH----cCCcCcCcCcc
Confidence 35567999963 35544433 5889999999976432 23489999754
No 142
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=28.29 E-value=24 Score=27.22 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=11.8
Q ss_pred ccCCCCCccCccccc
Q 003750 458 KFDEKGNFHCPFCAY 472 (798)
Q Consensus 458 ~~~peGdW~CP~C~y 472 (798)
..+=+|-|||..||.
T Consensus 15 ~DDCS~gw~CqaC~n 29 (38)
T 4cpa_I 15 HDDCSGAWFCQACWN 29 (38)
T ss_dssp SSSSCCCSSCCEEET
T ss_pred ccccccchHHHHHHh
Confidence 344589999999984
No 143
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=27.93 E-value=25 Score=38.44 Aligned_cols=52 Identities=35% Similarity=0.646 Sum_probs=34.5
Q ss_pred ccccccccCC----CCcE--EecCCCCCcccccccccCCCCccCCCC-------CccCccccccc
Q 003750 423 EQNLCVKCNK----DGQL--LSCSSSTCPLAVHENCLGFPVKFDEKG-------NFHCPFCAYTL 474 (798)
Q Consensus 423 ~~d~C~~C~~----~GqL--LcCD~~gCP~ayH~~Clg~~~~~~peG-------dW~CP~C~y~k 474 (798)
.+..|..|-. +|+| ..|+...|-..||..||-.-..-.+.+ ---||||.-+-
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 4567999974 3666 579888999999999995321111111 12499998543
No 144
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.91 E-value=65 Score=26.63 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=35.3
Q ss_pred CCcccccccccCC---CCcEEecCCCCCcccccccccCCCC--------cc---CCCCCccCccccccc
Q 003750 420 GWTEQNLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPV--------KF---DEKGNFHCPFCAYTL 474 (798)
Q Consensus 420 ~~~~~d~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~--------~~---~peGdW~CP~C~y~k 474 (798)
.+.....|..|++ .+++|.-. -..||..|+.... .+ ..+|..||..|..+.
T Consensus 11 ~~~~~~~C~~C~~~I~~~e~v~a~----~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~ 75 (82)
T 2co8_A 11 EAGAGDLCALCGEHLYVLERLCVN----GHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQT 75 (82)
T ss_dssp CCCSSCBCSSSCCBCCTTTBCCBT----TBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCC
T ss_pred CCCCCCCCcccCCCcccceEEEEC----CCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhh
Confidence 4455678999997 57776544 2589988887641 11 347899999997553
No 145
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.79 E-value=30 Score=28.28 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=32.9
Q ss_pred cccccccccCC--CCcEEecCCCCCcccccccccCCC---------CccCCCCCccCcccccc
Q 003750 422 TEQNLCVKCNK--DGQLLSCSSSTCPLAVHENCLGFP---------VKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 422 ~~~d~C~~C~~--~GqLLcCD~~gCP~ayH~~Clg~~---------~~~~peGdW~CP~C~y~ 473 (798)
.....|..|++ .|+.|.-. + ..||..|+... .-+.-+|..||..|..+
T Consensus 13 ~~~~~C~~C~~~I~~~~~~a~--~--~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~ 71 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFVKLR--D--RHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARE 71 (79)
T ss_dssp CCCCCCSSSCCCCCSSCEECS--S--CEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHH
T ss_pred CCCCccccCCCCccCcEEEEC--c--ceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHH
Confidence 45678999998 35655444 3 68999888774 12345788899888643
No 146
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.72 E-value=17 Score=28.65 Aligned_cols=47 Identities=17% Similarity=0.422 Sum_probs=32.0
Q ss_pred CCCcccccccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCccccc
Q 003750 419 SGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAY 472 (798)
Q Consensus 419 s~~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y 472 (798)
........|.+|...=.- .- ..|--.||..|+..-.. ....||.|..
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~--~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~ 56 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LI--LPCAHSFCQKCIDKWSD----RHRNCPICRL 56 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EE--ETTTEEECHHHHHHSSC----CCSSCHHHHH
T ss_pred hcCCCCCCCeeCCcCccC-cc--cCCCCcccHHHHHHHHH----CcCcCCCcCC
Confidence 345567789999864322 11 25778899999975433 5788999963
No 147
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.71 E-value=17 Score=29.57 Aligned_cols=53 Identities=19% Similarity=0.345 Sum_probs=33.7
Q ss_pred cCCCcccccccccCCCCcE----EecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750 418 TSGWTEQNLCVKCNKDGQL----LSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 418 ~s~~~~~d~C~~C~~~GqL----LcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
.....+...|.+|...=.- ..-- .|--.||..|+..-.... .+...||.|...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~--~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLL--HCGHTICRQCLEKLLASS-INGVRCPFCSKI 65 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEEC--SSSCEEEHHHHHHHHHHC-SSCBCCTTTCCC
T ss_pred hhhccCCCCCccCCccccccCCCeEEC--CCCChhhHHHHHHHHHcC-CCCcCCCCCCCc
Confidence 3455667789999863211 1111 577899999997643221 256899999754
No 148
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=24.58 E-value=46 Score=26.50 Aligned_cols=50 Identities=22% Similarity=0.443 Sum_probs=33.6
Q ss_pred CCCcccccccccCCC---CcEEecCCCCCcccccccccCCCCcc---CCCCCccCcccccc
Q 003750 419 SGWTEQNLCVKCNKD---GQLLSCSSSTCPLAVHENCLGFPVKF---DEKGNFHCPFCAYT 473 (798)
Q Consensus 419 s~~~~~d~C~~C~~~---GqLLcCD~~gCP~ayH~~Clg~~~~~---~peGdW~CP~C~y~ 473 (798)
....+...|.+|... -.+| .|--.||..|+..-... ...+...||.|...
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l-----~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~ 62 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSL-----DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGIS 62 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCC-----SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCC
T ss_pred hhcccCCCCcCCCcccCCeeEC-----CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCc
Confidence 345566789999742 2232 57788999999865332 22468899999754
No 149
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=23.73 E-value=19 Score=27.12 Aligned_cols=12 Identities=25% Similarity=0.852 Sum_probs=10.1
Q ss_pred CCCCCccCcccc
Q 003750 460 DEKGNFHCPFCA 471 (798)
Q Consensus 460 ~peGdW~CP~C~ 471 (798)
+-+|||+|-.|.
T Consensus 14 pregdwcchkcv 25 (36)
T 4b2u_A 14 PREGDWCCHKCV 25 (36)
T ss_dssp GGGCCSSSSEEE
T ss_pred CCccCeeeeccc
Confidence 348999999996
No 150
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.71 E-value=27 Score=26.25 Aligned_cols=46 Identities=17% Similarity=0.462 Sum_probs=30.1
Q ss_pred CCCcccccccccCC---CCcEEecCCCCCcccccccccCCCCccCCCCCccCccc
Q 003750 419 SGWTEQNLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFC 470 (798)
Q Consensus 419 s~~~~~d~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C 470 (798)
....+...|.+|.. ...+| .|--.||..|+..-... -.+...||.|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~-----~CgH~fC~~Ci~~~~~~-~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVII-----ECGHNFCKACITRWWED-LERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCC-----SSCCCCCHHHHHHHTTS-SCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeC-----CCCCccCHHHHHHHHHh-cCCCCCCCCC
Confidence 44556778999975 23343 46678999998754221 1367889988
No 151
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=23.46 E-value=26 Score=27.45 Aligned_cols=12 Identities=33% Similarity=1.035 Sum_probs=9.9
Q ss_pred CCCCccCc--cccc
Q 003750 461 EKGNFHCP--FCAY 472 (798)
Q Consensus 461 peGdW~CP--~C~y 472 (798)
..|||.|| .|.+
T Consensus 11 ~~GDW~C~~~~C~~ 24 (45)
T 1n0z_A 11 SDGDWICPDKKCGN 24 (45)
T ss_dssp CSSSCBCSSTTTCC
T ss_pred CCCCcCCCCCCCCC
Confidence 47999999 7864
No 152
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=22.22 E-value=54 Score=29.56 Aligned_cols=47 Identities=21% Similarity=0.341 Sum_probs=30.2
Q ss_pred ccccccccCC---CCcEEecCCCCCcccccccccCCC---C--------ccCCCCCccCcccccc
Q 003750 423 EQNLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFP---V--------KFDEKGNFHCPFCAYT 473 (798)
Q Consensus 423 ~~d~C~~C~~---~GqLLcCD~~gCP~ayH~~Clg~~---~--------~~~peGdW~CP~C~y~ 473 (798)
....|..|++ ++.+|.-. -..||..|+.+. . -+.-+|..||..|..+
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~----~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~ 120 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAM----DSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR 120 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEET----TEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHH
T ss_pred cCCcCcCCCCCcCCcEEEEeC----CcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhh
Confidence 3578999997 44444333 257898887663 1 1344688889888643
No 153
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.88 E-value=50 Score=26.22 Aligned_cols=47 Identities=15% Similarity=0.221 Sum_probs=31.7
Q ss_pred CCcccccccccCCCCc---EEecCCCCCcccccccccCCCCccCCCCCccCccccccch
Q 003750 420 GWTEQNLCVKCNKDGQ---LLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLS 475 (798)
Q Consensus 420 ~~~~~d~C~~C~~~Gq---LLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ka 475 (798)
...+...|.+|...=. +| .|--.||..|+..-.. ....||.|...-.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~-----~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSL-----PCKHVFCYLCVKGASW----LGKRCALCRQEIP 60 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEE-----TTTEEEEHHHHHHCTT----CSSBCSSSCCBCC
T ss_pred cCCCCCCCccCCcccCCCEEc-----cCCCHHHHHHHHHHHH----CCCcCcCcCchhC
Confidence 3455678999976322 33 5778899999975432 2378999986543
No 154
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.86 E-value=23 Score=28.46 Aligned_cols=51 Identities=14% Similarity=0.290 Sum_probs=33.0
Q ss_pred cCCCcccccccccCC----CCcEEecCCCCCcccccccccCCCC---------ccCCCCCccCccccc
Q 003750 418 TSGWTEQNLCVKCNK----DGQLLSCSSSTCPLAVHENCLGFPV---------KFDEKGNFHCPFCAY 472 (798)
Q Consensus 418 ~s~~~~~d~C~~C~~----~GqLLcCD~~gCP~ayH~~Clg~~~---------~~~peGdW~CP~C~y 472 (798)
+++......|..|++ ++.++.-. | ..||..|+.... -+.-+|..||..|..
T Consensus 5 ~~~~~~~~~C~~C~~~I~~~~~~~~a~--~--~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~ 68 (77)
T 1g47_A 5 MANALASATCERCKGGFAPAEKIVNSN--G--ELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQ 68 (77)
T ss_dssp CCSCCCCCBCSSSCCBCCSTTTCEEET--T--EEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHH
T ss_pred hccCCCCCCchhcCCccCCCceEEEeC--c--cEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHH
Confidence 344455678999998 45665444 2 489999887741 123467778887753
No 155
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=21.60 E-value=8.9 Score=41.19 Aligned_cols=50 Identities=16% Similarity=0.436 Sum_probs=30.9
Q ss_pred CcccccccccCCCCc-----EEecCCCCCcccccc---------cccCCCCccCCCCCccCcccccc
Q 003750 421 WTEQNLCVKCNKDGQ-----LLSCSSSTCPLAVHE---------NCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 421 ~~~~d~C~~C~~~Gq-----LLcCD~~gCP~ayH~---------~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
+.-...|.+|+.... .+.|. ||-.-|.. .|-+- =..+..+.+.|.+|+++
T Consensus 47 ~~~~~~C~vC~~~~~g~hygv~~C~--~C~~FFrR~~~~~~~~~~c~~~-C~~~~~~r~~C~~CR~~ 110 (419)
T 3dzy_D 47 SLMAIECRVCGDKASGFHYGVHACE--GCKGFFRRTIRLKLIYDRCDLN-CRIHKKSRNKCQYCRFQ 110 (419)
T ss_dssp ---CCCCSSSCSCCCSBCSSSBCCH--HHHHHHHHHHTTTCCCCCCCSC-CCCCTTGGGTCHHHHHH
T ss_pred CCCCCcCeECCCcCCCCccCcccch--hhhHHHccchhcccccccccCC-CCcccccCccchhhhHH
Confidence 344567999998654 78898 99854433 24221 12345677889999865
No 156
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=21.15 E-value=29 Score=35.03 Aligned_cols=46 Identities=26% Similarity=0.550 Sum_probs=32.2
Q ss_pred cccccccCCC-CcEEecCCCCCcccccccccCCCCccCCCCCccCcccccc
Q 003750 424 QNLCVKCNKD-GQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 424 ~d~C~~C~~~-GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y~ 473 (798)
...|..|..= .+=..|. .|...||..|+.--. -..+.--||.|.-.
T Consensus 180 i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~~~~--~~~~~~~CP~C~~~ 226 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYF--QSNAEPRCPHCNDY 226 (238)
T ss_dssp CCBCTTTCSBCSSCEECS--SSCCEECHHHHHHHT--TTCSSCBCTTTCCB
T ss_pred CCcCcchhhHHhCCcccC--ccChHHHHHHHHHHH--HhCCCCCCCCCCCC
Confidence 5679999862 1126788 599999999996421 22356789999643
No 157
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.04 E-value=20 Score=27.78 Aligned_cols=46 Identities=22% Similarity=0.455 Sum_probs=29.7
Q ss_pred CCCcccccccccCCCC---cEEecCCCCCcccccccccCCCCccCCCCCccCccc
Q 003750 419 SGWTEQNLCVKCNKDG---QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFC 470 (798)
Q Consensus 419 s~~~~~d~C~~C~~~G---qLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C 470 (798)
....+...|.+|...= .+| .|--.||..|+..-... ..+...||.|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~-----~CgH~fC~~Ci~~~~~~-~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTI-----DCGHNFCLKCITQIGET-SCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEEC-----TTSSEECHHHHHHHHHH-CSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEe-----CCCCcchHHHHHHHHHc-CCCCCcCcCC
Confidence 3456677899997532 233 56688888888754321 2356789887
No 158
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.98 E-value=19 Score=28.76 Aligned_cols=53 Identities=25% Similarity=0.362 Sum_probs=32.2
Q ss_pred CCCcccccccccCCCCcEEecCCCCCcccccccccCCCCcc--CCCCCccCcccccc
Q 003750 419 SGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKF--DEKGNFHCPFCAYT 473 (798)
Q Consensus 419 s~~~~~d~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~--~peGdW~CP~C~y~ 473 (798)
........|.+|...=.--. ...|--.||..|+..-... ...+...||.|...
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~--~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~ 68 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPL--SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRIS 68 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCB--CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCS
T ss_pred HHccCCCCCCCCCcccCCce--eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCc
Confidence 44566778999986422100 1256678888898653221 12467889999744
No 159
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=20.93 E-value=29 Score=30.67 Aligned_cols=34 Identities=21% Similarity=0.465 Sum_probs=26.7
Q ss_pred cccccCCCCcEEecCCCCCcccccccccCCCCccCCCCCccCccccc
Q 003750 426 LCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAY 472 (798)
Q Consensus 426 ~C~~C~~~GqLLcCD~~gCP~ayH~~Clg~~~~~~peGdW~CP~C~y 472 (798)
+|..|+... |+ .|...||..|+|.+ .|.|..|..
T Consensus 9 ~C~~C~~~~----C~--~C~~c~~~~~~~~~-------~~~~~~c~~ 42 (117)
T 4bbq_A 9 KCKACVQGE----CG--VCHYCRDMKKFGGP-------GRMKQSCVL 42 (117)
T ss_dssp CSHHHHSCC----CS--CSHHHHHSGGGTSC-------CCSCCCCGG
T ss_pred cCcCcCCcC----CC--CCCCCcCCcccCCC-------Cccccchhh
Confidence 577776643 98 99999999999865 488888864
No 160
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=20.14 E-value=13 Score=40.65 Aligned_cols=51 Identities=20% Similarity=0.553 Sum_probs=31.9
Q ss_pred CcccccccccCCCCc-----EEecCCCCCccccc--------ccccCCC-CccCCCCCccCcccccc
Q 003750 421 WTEQNLCVKCNKDGQ-----LLSCSSSTCPLAVH--------ENCLGFP-VKFDEKGNFHCPFCAYT 473 (798)
Q Consensus 421 ~~~~d~C~~C~~~Gq-----LLcCD~~gCP~ayH--------~~Clg~~-~~~~peGdW~CP~C~y~ 473 (798)
......|.+|+.... .+.|. ||..-|- ..|.... =..+..+.+.|++|+|+
T Consensus 134 ~~~~~~C~VCg~~a~g~hygv~sC~--~Ck~FFrR~~~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~ 198 (467)
T 3dzy_A 134 SFTKHICAICGDRSSGKHYGVYSCE--GCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 198 (467)
T ss_dssp ---CEECTTTSSEECSEETTEECCH--HHHHHHHHHHHTTCCCCCSSSSCCCCCSSSSSSCHHHHHH
T ss_pred CCCCCcceeCCCCCCCCcCCCcchh--hhhHhccccccCCCceeCCCCCCCCCCcccccccccchhh
Confidence 455678999987443 88999 9964332 2454322 12345688999999864
Done!