Query 003751
Match_columns 798
No_of_seqs 397 out of 2417
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 11:24:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1148 Glutaminyl-tRNA synthe 100.0 4E-222 9E-227 1805.6 53.2 754 8-796 2-764 (764)
2 PLN02859 glutamine-tRNA ligase 100.0 2E-217 4E-222 1866.1 79.1 785 7-798 3-788 (788)
3 PTZ00437 glutaminyl-tRNA synth 100.0 1E-150 2E-155 1273.2 56.9 543 232-797 20-564 (574)
4 PRK05347 glutaminyl-tRNA synth 100.0 3E-147 7E-152 1247.1 56.7 526 262-796 15-554 (554)
5 PRK14703 glutaminyl-tRNA synth 100.0 3E-143 6E-148 1258.2 56.8 528 262-797 17-560 (771)
6 TIGR00440 glnS glutaminyl-tRNA 100.0 4E-143 9E-148 1211.7 51.7 508 276-793 1-522 (522)
7 PLN03233 putative glutamate-tR 100.0 4E-136 8E-141 1153.8 52.2 501 271-793 7-512 (523)
8 PTZ00402 glutamyl-tRNA synthet 100.0 6E-134 1E-138 1145.6 53.3 505 271-792 48-554 (601)
9 PLN02907 glutamate-tRNA ligase 100.0 4E-130 9E-135 1149.6 53.9 502 272-790 210-716 (722)
10 PRK04156 gltX glutamyl-tRNA sy 100.0 3E-118 7E-123 1018.5 51.5 453 272-776 98-556 (567)
11 TIGR00463 gltX_arch glutamyl-t 100.0 1E-117 3E-122 1012.1 49.0 465 272-783 90-557 (560)
12 KOG1147 Glutamyl-tRNA syntheta 100.0 2E-116 4E-121 962.2 38.5 503 271-791 196-704 (712)
13 COG0008 GlnS Glutamyl- and glu 100.0 3.5E-90 7.6E-95 776.1 4.0 448 276-773 10-472 (472)
14 PLN02627 glutamyl-tRNA synthet 100.0 5.3E-74 1.1E-78 649.3 24.8 321 265-612 35-384 (535)
15 PRK12410 glutamylglutaminyl-tR 100.0 8.3E-74 1.8E-78 637.9 22.5 289 277-598 1-304 (433)
16 PF00749 tRNA-synt_1c: tRNA sy 100.0 4.8E-74 1E-78 621.9 14.6 306 275-596 1-314 (314)
17 cd00807 GlnRS_core catalytic c 100.0 1.5E-72 3.2E-77 583.6 24.6 238 275-584 1-238 (238)
18 PRK12558 glutamyl-tRNA synthet 100.0 7.4E-72 1.6E-76 624.7 23.5 294 275-598 2-310 (445)
19 KOG1149 Glutamyl-tRNA syntheta 100.0 7.7E-72 1.7E-76 601.3 20.3 298 274-598 32-352 (524)
20 PRK05710 glutamyl-Q tRNA(Asp) 100.0 2.4E-69 5.1E-74 578.2 24.8 281 273-591 3-298 (299)
21 cd09287 GluRS_non_core catalyt 100.0 3.5E-69 7.6E-74 560.0 24.6 238 275-584 1-240 (240)
22 PRK01406 gltX glutamyl-tRNA sy 100.0 2E-69 4.4E-74 613.6 23.5 299 273-598 2-321 (476)
23 PRK14895 gltX glutamyl-tRNA sy 100.0 3.3E-69 7.2E-74 609.4 22.4 308 273-612 2-330 (513)
24 TIGR00464 gltX_bact glutamyl-t 100.0 2.2E-68 4.8E-73 604.7 23.4 297 275-598 1-312 (470)
25 TIGR03838 queuosine_YadB gluta 100.0 2.9E-67 6.3E-72 556.3 22.1 260 276-572 1-270 (272)
26 cd00418 GlxRS_core catalytic c 100.0 6.8E-62 1.5E-66 503.5 17.4 222 275-598 1-224 (230)
27 cd00808 GluRS_core catalytic c 100.0 5.6E-58 1.2E-62 477.4 15.7 223 275-598 1-233 (239)
28 PF04558 tRNA_synt_1c_R1: Glut 100.0 1.2E-48 2.6E-53 385.9 14.6 162 8-169 2-164 (164)
29 PF03950 tRNA-synt_1c_C: tRNA 100.0 3.3E-42 7.2E-47 344.4 13.5 171 582-773 1-174 (174)
30 COG0215 CysS Cysteinyl-tRNA sy 99.9 4.8E-26 1E-30 253.8 14.0 254 281-575 29-316 (464)
31 PF01406 tRNA-synt_1e: tRNA sy 99.9 2.2E-25 4.7E-30 238.0 9.5 251 281-573 15-298 (300)
32 TIGR00435 cysS cysteinyl-tRNA 99.9 1.7E-23 3.7E-28 238.5 18.3 255 280-576 27-314 (465)
33 PRK00260 cysS cysteinyl-tRNA s 99.9 6.5E-23 1.4E-27 233.8 19.5 262 273-576 21-315 (463)
34 PLN02946 cysteine-tRNA ligase 99.9 2E-23 4.4E-28 240.0 12.6 254 281-576 87-372 (557)
35 PRK14534 cysS cysteinyl-tRNA s 99.9 5E-23 1.1E-27 233.5 15.4 250 281-575 28-328 (481)
36 PRK14536 cysS cysteinyl-tRNA s 99.9 1.3E-22 2.9E-27 230.9 16.9 251 281-576 30-329 (490)
37 PRK12418 cysteinyl-tRNA synthe 99.9 6.4E-23 1.4E-27 227.5 13.4 258 281-576 16-311 (384)
38 TIGR03447 mycothiol_MshC cyste 99.9 1.8E-22 4E-27 225.0 12.5 257 281-575 43-337 (411)
39 PRK14535 cysS cysteinyl-tRNA s 99.9 1.3E-21 2.7E-26 226.9 18.3 249 281-575 255-556 (699)
40 PTZ00399 cysteinyl-tRNA-synthe 99.8 1.2E-20 2.6E-25 222.3 14.2 267 274-575 58-363 (651)
41 KOG2007 Cysteinyl-tRNA synthet 99.8 4.7E-20 1E-24 203.9 12.9 262 260-562 39-341 (586)
42 cd00671 ArgRS_core catalytic c 99.7 2E-17 4.3E-22 170.6 13.8 184 276-516 2-212 (212)
43 PF04557 tRNA_synt_1c_R2: Glut 99.6 2.8E-16 6.1E-21 139.5 2.3 82 170-268 1-84 (84)
44 PRK11893 methionyl-tRNA synthe 99.5 9.2E-14 2E-18 160.4 18.3 271 276-576 4-349 (511)
45 PRK01611 argS arginyl-tRNA syn 99.5 3.7E-14 8E-19 164.1 13.5 225 273-571 110-383 (507)
46 cd00802 class_I_aaRS_core cata 99.4 1.9E-13 4.1E-18 132.3 5.3 133 277-515 1-143 (143)
47 cd00668 Ile_Leu_Val_MetRS_core 99.4 1E-11 2.2E-16 135.2 17.8 242 279-557 6-304 (312)
48 cd00814 MetRS_core catalytic c 99.3 1.2E-10 2.6E-15 127.5 19.0 94 276-369 3-116 (319)
49 TIGR00398 metG methionyl-tRNA 99.2 1.5E-10 3.2E-15 134.8 17.3 94 276-369 2-115 (530)
50 cd00672 CysRS_core catalytic c 99.2 7.1E-11 1.5E-15 122.5 10.6 78 461-560 129-208 (213)
51 PRK00133 metG methionyl-tRNA s 99.1 3.8E-09 8.2E-14 126.5 21.4 94 276-369 5-118 (673)
52 cd00812 LeuRS_core catalytic c 99.1 6.3E-10 1.4E-14 121.6 12.8 93 277-369 4-118 (314)
53 PRK00750 lysK lysyl-tRNA synth 99.1 1.5E-09 3.2E-14 125.9 16.0 251 275-578 24-330 (510)
54 PRK12268 methionyl-tRNA synthe 99.1 1.4E-09 3.1E-14 127.4 14.8 94 276-369 6-120 (556)
55 cd00674 LysRS_core_class_I cat 99.1 8E-09 1.7E-13 114.6 19.9 236 274-557 19-306 (353)
56 cd00818 IleRS_core catalytic c 99.0 3.3E-09 7.1E-14 117.2 16.2 91 281-371 9-138 (338)
57 PRK12267 methionyl-tRNA synthe 99.0 1.1E-09 2.4E-14 130.6 13.2 94 276-369 7-120 (648)
58 PLN02224 methionine-tRNA ligas 99.0 9.5E-09 2.1E-13 121.4 18.5 94 276-369 72-185 (616)
59 cd00817 ValRS_core catalytic c 98.9 3.2E-08 6.9E-13 111.1 14.8 92 278-369 6-135 (382)
60 PF09334 tRNA-synt_1g: tRNA sy 98.8 9.1E-08 2E-12 107.9 14.9 102 462-580 278-381 (391)
61 PLN02610 probable methionyl-tR 98.8 5.5E-07 1.2E-11 109.6 21.9 94 276-369 20-134 (801)
62 COG0143 MetG Methionyl-tRNA sy 98.7 1.7E-07 3.7E-12 109.3 14.2 94 276-369 8-121 (558)
63 TIGR00467 lysS_arch lysyl-tRNA 98.7 5E-07 1.1E-11 104.9 17.9 95 466-578 224-324 (515)
64 cd00806 TrpRS_core catalytic c 98.7 1.1E-07 2.3E-12 102.8 11.5 171 283-516 7-197 (280)
65 PRK12451 arginyl-tRNA syntheta 98.7 2.3E-07 5E-12 109.1 14.8 55 473-542 331-388 (562)
66 TIGR00456 argS arginyl-tRNA sy 98.6 4.1E-07 8.9E-12 107.2 13.3 52 467-518 326-380 (566)
67 PLN02286 arginine-tRNA ligase 98.5 1.6E-06 3.6E-11 102.3 14.4 45 274-318 117-164 (576)
68 COG0018 ArgS Arginyl-tRNA synt 98.4 7.8E-06 1.7E-10 96.2 16.3 230 273-517 116-390 (577)
69 PF00750 tRNA-synt_1d: tRNA sy 98.2 9.1E-06 2E-10 90.7 12.0 47 273-319 19-68 (354)
70 KOG0436 Methionyl-tRNA synthet 98.1 9.6E-06 2.1E-10 89.9 9.7 278 283-580 49-398 (578)
71 PF01921 tRNA-synt_1f: tRNA sy 98.1 5.6E-05 1.2E-09 84.0 14.3 240 263-555 10-311 (360)
72 PRK12285 tryptophanyl-tRNA syn 97.8 0.00018 3.9E-09 80.8 13.0 191 258-517 50-258 (368)
73 TIGR00233 trpS tryptophanyl-tR 97.7 0.00024 5.2E-09 78.7 12.5 170 283-517 10-199 (328)
74 COG0180 TrpS Tryptophanyl-tRNA 97.7 0.0002 4.4E-09 78.4 10.9 175 283-519 13-207 (314)
75 PRK00390 leuS leucyl-tRNA synt 97.7 6.9E-05 1.5E-09 92.0 7.8 94 276-369 35-150 (805)
76 cd00805 TyrRS_core catalytic c 97.6 0.00093 2E-08 72.0 14.5 221 283-579 8-251 (269)
77 TIGR00396 leuS_bact leucyl-tRN 97.6 0.00015 3.2E-09 89.5 8.8 92 276-369 32-147 (842)
78 COG1384 LysS Lysyl-tRNA synthe 97.6 0.0012 2.5E-08 76.0 15.0 96 466-578 228-329 (521)
79 PRK08560 tyrosyl-tRNA syntheta 97.6 0.0005 1.1E-08 76.2 11.6 189 261-515 17-219 (329)
80 PRK12556 tryptophanyl-tRNA syn 97.5 0.00088 1.9E-08 74.3 12.6 88 283-378 11-107 (332)
81 COG2511 GatE Archaeal Glu-tRNA 97.5 0.0029 6.3E-08 72.6 15.9 164 11-184 458-630 (631)
82 PRK13208 valS valyl-tRNA synth 97.4 0.00033 7.2E-09 86.1 8.3 94 276-369 40-169 (800)
83 PLN02563 aminoacyl-tRNA ligase 97.3 0.00053 1.2E-08 85.4 9.3 94 276-369 113-229 (963)
84 COG0495 LeuS Leucyl-tRNA synth 97.3 0.00019 4.1E-09 87.2 4.3 92 276-369 37-152 (814)
85 TIGR00422 valS valyl-tRNA synt 97.3 0.00058 1.3E-08 84.6 8.6 92 278-369 38-167 (861)
86 PLN02943 aminoacyl-tRNA ligase 97.3 0.00066 1.4E-08 84.9 8.9 94 276-369 91-222 (958)
87 PTZ00419 valyl-tRNA synthetase 97.2 0.0006 1.3E-08 85.7 8.3 94 276-369 63-195 (995)
88 TIGR00392 ileS isoleucyl-tRNA 97.2 0.00068 1.5E-08 84.0 8.5 95 276-370 39-172 (861)
89 PLN02843 isoleucyl-tRNA synthe 97.2 0.00083 1.8E-08 84.2 8.3 94 276-369 35-164 (974)
90 PRK13354 tyrosyl-tRNA syntheta 97.2 0.013 2.8E-07 67.0 17.0 98 467-579 186-287 (410)
91 PRK14900 valS valyl-tRNA synth 97.1 0.00072 1.6E-08 85.3 7.5 94 276-369 51-183 (1052)
92 TIGR00134 gatE_arch glutamyl-t 97.1 0.011 2.4E-07 70.5 16.7 161 9-179 448-617 (620)
93 PRK12282 tryptophanyl-tRNA syn 97.1 0.0012 2.7E-08 73.2 8.3 91 276-377 5-104 (333)
94 PRK05743 ileS isoleucyl-tRNA s 97.1 0.001 2.2E-08 83.0 8.2 94 276-369 52-180 (912)
95 PLN02381 valyl-tRNA synthetase 97.1 0.0011 2.4E-08 83.7 8.4 95 276-370 131-264 (1066)
96 PRK05729 valS valyl-tRNA synth 97.1 0.0011 2.5E-08 82.2 8.1 89 281-369 44-170 (874)
97 PF00133 tRNA-synt_1: tRNA syn 97.1 0.0014 3.1E-08 78.1 8.5 92 278-369 28-158 (601)
98 PLN02486 aminoacyl-tRNA ligase 97.0 0.0084 1.8E-07 67.9 13.5 78 283-360 81-169 (383)
99 PTZ00427 isoleucine-tRNA ligas 97.0 0.0015 3.3E-08 83.1 8.3 90 280-369 109-237 (1205)
100 PRK06039 ileS isoleucyl-tRNA s 96.9 0.0019 4.2E-08 81.1 8.2 93 277-369 45-176 (975)
101 PLN02882 aminoacyl-tRNA ligase 96.9 0.0021 4.6E-08 81.8 8.6 89 281-369 46-173 (1159)
102 TIGR00395 leuS_arch leucyl-tRN 96.9 0.0015 3.3E-08 81.7 7.1 94 276-369 28-167 (938)
103 PRK04028 glutamyl-tRNA(Gln) am 96.9 0.021 4.6E-07 68.2 16.0 166 9-184 455-629 (630)
104 PRK05912 tyrosyl-tRNA syntheta 96.9 0.017 3.8E-07 65.9 14.8 88 262-353 22-130 (408)
105 cd00395 Tyr_Trp_RS_core cataly 96.8 0.0054 1.2E-07 66.4 9.9 172 283-518 7-206 (273)
106 COG0525 ValS Valyl-tRNA synthe 96.8 0.0034 7.4E-08 76.7 8.7 90 280-369 40-167 (877)
107 PRK00927 tryptophanyl-tRNA syn 96.8 0.0024 5.2E-08 71.0 6.8 73 283-357 9-89 (333)
108 PRK05477 gatB aspartyl/glutamy 96.7 0.042 9.1E-07 63.8 16.1 161 10-178 299-473 (474)
109 PTZ00126 tyrosyl-tRNA syntheta 96.7 0.032 6.8E-07 63.3 14.7 92 261-353 53-155 (383)
110 PRK14703 glutaminyl-tRNA synth 96.6 0.037 8E-07 67.6 15.8 159 13-179 600-770 (771)
111 PLN02751 glutamyl-tRNA(Gln) am 96.6 0.054 1.2E-06 63.8 16.3 161 10-179 367-541 (544)
112 PF00579 tRNA-synt_1b: tRNA sy 96.6 0.0034 7.4E-08 68.2 5.9 177 283-520 13-208 (292)
113 PRK13804 ileS isoleucyl-tRNA s 96.5 0.0053 1.2E-07 77.0 8.3 94 276-369 57-188 (961)
114 KOG0435 Leucyl-tRNA synthetase 96.3 0.0053 1.1E-07 72.2 5.6 92 274-369 58-175 (876)
115 TIGR00133 gatB glutamyl-tRNA(G 96.3 0.092 2E-06 61.1 15.6 159 12-178 304-476 (478)
116 cd02156 nt_trans nucleotidyl t 95.6 0.065 1.4E-06 49.3 8.6 39 278-321 2-40 (105)
117 PLN02959 aminoacyl-tRNA ligase 95.4 0.035 7.5E-07 70.7 8.0 31 275-305 46-77 (1084)
118 COG0064 GatB Asp-tRNAAsn/Glu-t 94.6 0.7 1.5E-05 53.7 15.0 156 16-178 311-479 (483)
119 KOG0432 Valyl-tRNA synthetase 94.5 0.087 1.9E-06 64.0 7.5 92 280-371 82-212 (995)
120 TIGR00395 leuS_arch leucyl-tRN 94.5 0.096 2.1E-06 65.9 8.3 65 495-575 604-669 (938)
121 COG0008 GlnS Glutamyl- and glu 94.3 0.02 4.4E-07 66.4 1.9 66 533-598 257-322 (472)
122 PLN02886 aminoacyl-tRNA ligase 94.3 0.087 1.9E-06 59.8 6.8 93 275-378 48-148 (389)
123 PRK12283 tryptophanyl-tRNA syn 94.0 0.097 2.1E-06 59.5 6.4 67 283-350 10-85 (398)
124 PRK12284 tryptophanyl-tRNA syn 93.8 0.19 4E-06 57.8 8.2 74 283-358 10-93 (431)
125 PF02637 GatB_Yqey: GatB domai 93.0 0.4 8.6E-06 47.1 8.2 102 73-178 43-147 (148)
126 smart00845 GatB_Yqey GatB doma 92.8 0.9 1.9E-05 44.7 10.2 101 73-178 42-146 (147)
127 PRK12300 leuS leucyl-tRNA synt 92.2 0.4 8.7E-06 60.2 8.6 61 499-575 566-626 (897)
128 PTZ00348 tyrosyl-tRNA syntheta 91.3 0.96 2.1E-05 55.0 10.1 90 261-351 19-119 (682)
129 PF09424 YqeY: Yqey-like prote 91.0 0.74 1.6E-05 45.5 7.3 85 74-178 57-142 (143)
130 PLN02943 aminoacyl-tRNA ligase 90.4 0.49 1.1E-05 59.8 6.8 65 497-579 569-634 (958)
131 TIGR00422 valS valyl-tRNA synt 90.3 0.7 1.5E-05 57.8 8.1 88 473-578 484-576 (861)
132 PRK12300 leuS leucyl-tRNA synt 89.9 0.44 9.5E-06 59.9 5.9 80 288-369 1-128 (897)
133 PRK06039 ileS isoleucyl-tRNA s 89.7 0.54 1.2E-05 59.6 6.5 66 498-579 579-645 (975)
134 PRK13208 valS valyl-tRNA synth 89.7 0.74 1.6E-05 57.2 7.6 64 497-578 519-583 (800)
135 COG0162 TyrS Tyrosyl-tRNA synt 88.9 5.4 0.00012 45.8 13.1 102 259-365 18-137 (401)
136 TIGR00392 ileS isoleucyl-tRNA 88.1 0.88 1.9E-05 56.9 6.7 64 499-579 599-663 (861)
137 TIGR00234 tyrS tyrosyl-tRNA sy 87.9 2.2 4.7E-05 48.6 9.1 86 262-352 20-124 (377)
138 PRK05729 valS valyl-tRNA synth 87.2 1.5 3.2E-05 55.1 7.9 67 497-580 506-573 (874)
139 PHA01735 hypothetical protein 86.8 1.2 2.7E-05 38.4 4.7 55 76-131 19-75 (76)
140 PLN02959 aminoacyl-tRNA ligase 86.6 1.9 4.2E-05 55.3 8.6 62 498-575 706-767 (1084)
141 PRK14900 valS valyl-tRNA synth 83.6 2.4 5.3E-05 54.3 7.5 65 498-579 525-590 (1052)
142 PLN02843 isoleucyl-tRNA synthe 83.1 2 4.3E-05 54.6 6.4 60 496-571 596-664 (974)
143 COG0060 IleS Isoleucyl-tRNA sy 82.6 2.4 5.3E-05 53.1 6.7 90 281-370 57-184 (933)
144 PRK05743 ileS isoleucyl-tRNA s 81.8 3.1 6.7E-05 52.6 7.4 56 500-572 581-637 (912)
145 PRK13804 ileS isoleucyl-tRNA s 79.1 4.7 0.0001 51.3 7.7 59 497-572 616-675 (961)
146 PTZ00427 isoleucine-tRNA ligas 78.9 4 8.7E-05 53.0 7.1 63 500-578 709-773 (1205)
147 COG0525 ValS Valyl-tRNA synthe 78.9 5.6 0.00012 49.6 7.9 66 490-571 502-570 (877)
148 KOG2713 Mitochondrial tryptoph 76.0 4.8 0.0001 44.0 5.6 69 282-350 20-99 (347)
149 PF00133 tRNA-synt_1: tRNA syn 75.4 6 0.00013 47.7 6.9 73 468-557 515-592 (601)
150 PLN02882 aminoacyl-tRNA ligase 73.5 7.3 0.00016 50.5 7.3 68 492-575 594-664 (1159)
151 PRK00390 leuS leucyl-tRNA synt 70.2 10 0.00022 47.4 7.3 48 510-573 570-617 (805)
152 TIGR00396 leuS_bact leucyl-tRN 69.2 4.4 9.6E-05 50.8 4.0 48 510-573 604-651 (842)
153 COG0495 LeuS Leucyl-tRNA synth 63.5 8.3 0.00018 48.0 4.7 44 502-561 570-614 (814)
154 KOG2438 Glutamyl-tRNA amidotra 63.5 2.2E+02 0.0047 33.4 15.2 161 15-178 327-502 (505)
155 PF00749 tRNA-synt_1c: tRNA sy 62.7 0.73 1.6E-05 51.1 -4.1 37 525-561 258-294 (314)
156 PLN02381 valyl-tRNA synthetase 62.3 20 0.00044 46.2 8.0 54 284-340 378-443 (1066)
157 PTZ00419 valyl-tRNA synthetase 61.9 13 0.00028 47.6 6.2 54 284-340 312-376 (995)
158 KOG0433 Isoleucyl-tRNA synthet 60.4 18 0.00039 44.3 6.5 109 260-371 44-189 (937)
159 PLN02563 aminoacyl-tRNA ligase 56.0 15 0.00032 47.0 5.1 53 510-579 723-775 (963)
160 KOG0437 Leucyl-tRNA synthetase 55.0 21 0.00046 43.7 5.8 69 272-342 42-116 (1080)
161 COG0177 Nth Predicted EndoIII- 41.0 87 0.0019 33.1 7.2 28 4-31 64-91 (211)
162 COG0060 IleS Isoleucyl-tRNA sy 36.0 18 0.00039 45.8 1.5 57 501-574 592-649 (933)
163 COG3118 Thioredoxin domain-con 35.4 3E+02 0.0065 30.7 10.4 86 93-189 206-291 (304)
164 KOG2145 Cytoplasmic tryptophan 32.8 44 0.00095 36.9 3.5 67 276-344 89-162 (397)
165 COG1610 Uncharacterized conser 32.4 4.6E+02 0.0099 26.4 10.1 85 74-178 61-146 (148)
166 PF09682 Holin_LLH: Phage holi 32.4 1.1E+02 0.0025 28.6 5.9 40 88-139 65-104 (108)
167 PLN02207 UDP-glycosyltransfera 31.3 72 0.0016 37.5 5.3 72 109-187 384-468 (468)
168 cd02168 NMNAT_Nudix Nicotinami 25.5 1.5E+02 0.0033 30.3 6.0 58 275-341 3-66 (181)
169 PRK13793 nicotinamide-nucleoti 23.8 50 0.0011 34.5 2.0 38 273-319 6-43 (196)
170 PF10440 WIYLD: Ubiquitin-bind 23.4 63 0.0014 28.0 2.2 29 4-32 6-34 (65)
171 KOG4426 Arginyl-tRNA synthetas 22.7 70 0.0015 37.2 3.0 44 274-317 188-234 (656)
172 COG1056 NadR Nicotinamide mono 22.7 52 0.0011 33.7 1.9 60 273-341 5-70 (172)
173 PF09312 SurA_N: SurA N-termin 21.3 60 0.0013 30.7 1.9 22 119-140 63-84 (118)
174 COG3372 Predicted nuclease of 20.5 3.4E+02 0.0074 31.3 7.8 107 10-129 30-147 (396)
175 COG4720 Predicted membrane pro 20.2 74 0.0016 32.7 2.4 30 278-307 26-56 (177)
No 1
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-222 Score=1805.63 Aligned_cols=754 Identities=57% Similarity=0.956 Sum_probs=716.1
Q ss_pred ChhHHHHHHHhcCCChhhHHHhhhCHHHHHHHHHHHHHcccCCCCchhhhHHHHHHHhhCCCCCCCchHHHHHHHhcCCC
Q 003751 8 DKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHRPTLLLYIVSSKI 87 (798)
Q Consensus 8 ~~~~~~~~f~~iGl~e~ka~e~~kn~~~~~~l~~~I~~a~~~~~~~~~~g~lly~la~~~~~~~~~~~~~~~~yI~~~~i 87 (798)
.|++++++|.+|||||+||+||+||++|+++|..+|.+|++.++||+++|+|||+||+++++|..+|+++|++||++|+|
T Consensus 2 ~~~dl~~~f~~lGlse~k~~etlKn~kvs~~l~~~i~~a~~~~~~~~~~g~Lly~lAt~~~~q~~~~~~llv~yI~~~~i 81 (764)
T KOG1148|consen 2 AMEDLIALFTSLGLSEKKVKETLKNKKVSANLEKIIKEADVSSGCDRTTGNLLYTLATKLKPQKLAHLPLLVSYIVNGKI 81 (764)
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHhHHHHHHHHHHHHHhcccccccccccchhHHHHHhhcCccccccchHHHHHHHhccc
Confidence 57899999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhhCCCCC
Q 003751 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWAD 167 (798)
Q Consensus 88 kt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~~RY~~n~g~l~~~~r~~lkwad 167 (798)
||++||+||++|++++ ++|..+|+++|||||+||||||+++|.++|++|++.|+++||+||.| |++.||+.|||||
T Consensus 82 kt~~ql~aa~~Y~~~~---~~~~~~fe~ecgvgvvvtpeqie~~V~~~i~~~k~~il~eRy~~~~g-l~~~~R~~LkwAD 157 (764)
T KOG1148|consen 82 KTELQLDAALEYVKSH---TLDKKDFEKECGVGVVVTPEQIEEAVRKYIAENKEKILEERYHFNKG-LFGDVRKELKWAD 157 (764)
T ss_pred CchHHHHHHHHHHhcc---ccchhhhhhhcCccEEECHHHHHHHHHHHHHHhHHHHHHHHHhcchh-hHHHHHhhcCCCC
Confidence 9999999999999984 58889999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCchhhhhhhhhhhhhhhccCCCcchhhcc-----ccCCCCCCCCccccCCCCCCCCCCCCcc
Q 003751 168 PKIVKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDKK-----FANDAPVQLPEEDLFPISNFPPPEENYK 242 (798)
Q Consensus 168 ~~~~k~~~d~~~l~lLgpK~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~p~~n~~ 242 (798)
++.||++||+++++||||||++|++++.|++++ +.++++.+.++. +++....+++|+|+. +||+||||+
T Consensus 158 ~~~vk~~iD~~~l~LlGpkte~dl~~~~k~~k~--~~~k~~~~~~~~~~~~e~~s~~~~~~~e~~~~---~~hk~gent- 231 (764)
T KOG1148|consen 158 PKSVKKEIDKEVLELLGPKTEADLEKKKKKKKA--EGEKKKTVSAKKAKNQEAASDKAPQIEELFLT---KFHKPGENT- 231 (764)
T ss_pred HHHHHHHHhhHHHHhcCccchhhcccccccccc--cccccccccCCCCCchhhhcccccchhhhhhh---hcccCCCCc-
Confidence 999999999999999999999999988666422 222222221111 122345689999999 999999999
Q ss_pred ccccccccCCCccccccCcHHHHHHhhhhcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccc
Q 003751 243 QVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAE 322 (798)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~hl~~~~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re 322 (798)
| +|+|+|++||++|||+|+|||||+|||+||||||+|+.+||+||+.+||.|+||||||||++|
T Consensus 232 ~----------------~t~ellk~HL~~TGGkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkE 295 (764)
T KOG1148|consen 232 Q----------------HTEELLKEHLERTGGKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKE 295 (764)
T ss_pred c----------------chHHHHHHHHHhhCCeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchh
Confidence 6 679999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCCCCcccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhc-cCCCCCCCCCChHHHHHHH
Q 003751 323 KKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE-KKMNSPWRDRPIAESLKLF 401 (798)
Q Consensus 323 ~~e~~~~I~edL~wLGl~pd~i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~-~~y~~~~R~~s~ee~l~~f 401 (798)
.++|+++|.++++|||++|++++|+||||+++|++|.+||++|+||+|||+.+||++.|+ ...+|+||+|++||||++|
T Consensus 296 ee~yf~sI~e~V~WLG~~P~kvTysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~~~~spwRdRPieEsL~lF 375 (764)
T KOG1148|consen 296 EEEYFESIKEMVAWLGFEPYKVTYSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERRGFNERLSPWRDRPIEESLRLF 375 (764)
T ss_pred hHHHHHHHHHHHHHhCCCceeeecchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhcCCCCCCCccccCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987 3347999999999999999
Q ss_pred HHhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccch
Q 003751 402 EDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRR 481 (798)
Q Consensus 402 ~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t 481 (798)
++|++|++++|+++||||+|++++|++|+|+|+||+.+.+|||+|++||||||||||||++||+++|||++|+.||..++
T Consensus 376 ~~Mr~Gk~~eGeAtLRmK~dl~~~~p~m~DlvayRik~~pHpRtg~kwcIYPTYDythCl~DSlEnITHSlCT~EF~~rR 455 (764)
T KOG1148|consen 376 EDMRDGKYEEGEATLRMKQDLESGNPQMWDLVAYRIKNVPHPRTGDKWCIYPTYDYTHCLVDSLENITHSLCTKEFQTRR 455 (764)
T ss_pred HHHhcCCcCcChhheeeeeeccCCCccccccceeeeecCCCCCCCCceEEecccchhhhehhhhhhhhhHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCCCCceeeeeeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCC
Q 003751 482 ASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 561 (798)
Q Consensus 482 ~~q~~L~~aLg~~~P~~w~f~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~ 561 (798)
.+|+|||++|++|+|.||+|||||++|++||||++.+||++|+|+||||||++||.+|||||++|+||++||+.+|+|.+
T Consensus 456 ~SY~WLcnaL~iY~P~qwEYgRLNv~~tv~SKRKi~~Lv~~~~V~~wDDPRLfTL~alRRRG~ppeAIn~F~~~lGvT~a 535 (764)
T KOG1148|consen 456 SSYYWLCNALEIYCPVQWEYGRLNVTYTVVSKRKILKLVTEGYVRGWDDPRLFTLTALRRRGFPPEAINNFCASLGVTTA 535 (764)
T ss_pred hhHHHHHhhhhcccchhhhhceeeeeeeeeehHHHHHHhhhcccccCCCccchhhhhHHhcCCCHHHHHHHHHHhCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccHhhHHHHHHHhhhccCCcceeEecceeEEEEeCCCCceeeeccccCCCCCCCCCCceeEeccccceeeecccccc
Q 003751 562 DSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRM 641 (798)
Q Consensus 562 ~~~~~~~~Le~~ir~~~~~~~~R~~av~dp~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~ 641 (798)
+.+++..+||+++|++++.++||.|+|++|+||+|+|+++++...+++|++|+ +|.+|+|+|||++.||||++||++
T Consensus 536 ~~~i~v~~lE~~VRd~Ln~tapR~M~VleplkVti~N~~~~~~~~i~iPd~P~---dp~~g~~~Vpft~vIYIErSDFke 612 (764)
T KOG1148|consen 536 QTTIDVARLEAAVRDYLNDTAPRLMFVLEPLKVTIENLSDDYPESIEIPDFPG---DPTSGFHKVPFTRVIYIERSDFKE 612 (764)
T ss_pred eceecHHHHHHHHHHHHhccCcceEEeecceEEEEecCCcchhhhccCCCCCC---CCccccccccccceEEEEcccccc
Confidence 99999999999999999999999999999999999999999989999999998 799999999999999999999999
Q ss_pred cCCccccCcCCCCEEEEeeee-eEEEEEeeecCCCCCEEEEEEEEcC-CCCCCCCeeEEeccCCCCCCCCeeEEEEeccc
Q 003751 642 KDSKDYYGLAPGKSVLLRYAF-PIKCTEVILSDDKETILHIRAEYDP-SKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEK 719 (798)
Q Consensus 642 ~~~~~~~~l~~g~~v~l~~~~-~i~~~~~~~~~~~g~v~e~~~~~~~-~~~~K~k~~I~WV~~~~~~~~~v~~evr~y~~ 719 (798)
+++|+|+||+|||+|+|+|.+ +|.+..|. +|++|.|+||+++||+ +.++|||++|||||+ +|+.||||+|++
T Consensus 613 e~dK~f~RLtpgQpVGLr~~~~vi~~~~vv-kD~~g~v~ei~v~yd~~s~~~KPK~fIhWVse-----~Pv~vEvRlye~ 686 (764)
T KOG1148|consen 613 EDDKDFFRLTPGQPVGLRYAGYVIRVVKVV-KDDEGTVIEIHVEYDPASKKKKPKAFIHWVSE-----SPVKVEVRLYEQ 686 (764)
T ss_pred cCCcchhccCCCCcceeEeecceEEEEEEe-eCCCCceEEEEEEecccccccCCceeEEeccC-----CCeEeehhHHHH
Confidence 999999999999999999885 55555565 9999999999999998 566899999999996 499999999999
Q ss_pred cCCCCCCCCc-cCccccCCCCCceeecceeeccccccCCCCCeEEEEEeeeEEEecCCCCCCeeEeeecCCCCCCCCC
Q 003751 720 LFNSENPAEL-DDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPKG 796 (798)
Q Consensus 720 Lf~~~~p~~~-~~~~~~iN~~S~~~~~~a~~e~~~~~~~~~~~~QfeR~Gyf~~D~~s~~~~~v~n~~v~lk~~~~k~ 796 (798)
||+++||++. +.||+||||+|+.|+.+|++|..+...+++|+|||||+||||||+||+.++|||||||+||+++||+
T Consensus 687 LFks~NP~d~~e~fLsDiNp~S~~V~~~a~~D~~~~~a~v~DrFQfeRiGYF~VDkDSt~~kLVfNRtV~LKd~~gk~ 764 (764)
T KOG1148|consen 687 LFKSENPADLNEVFLSDINPDSLVVVKGALADKSISDAKVYDRFQFERIGYFCVDKDSTPGKLVFNRTVTLKDDSGKK 764 (764)
T ss_pred HhccCCccchhHHHHHhcCccchhhhhhhhhhhhhcccchhhhHhhhhcceeEecCCCCCceEEEEeEEEeccCCCCC
Confidence 9999999986 6799999999999999999999999999999999999999999999999999999999999998874
No 2
>PLN02859 glutamine-tRNA ligase
Probab=100.00 E-value=1.7e-217 Score=1866.12 Aligned_cols=785 Identities=83% Similarity=1.312 Sum_probs=750.6
Q ss_pred CChhHHHHHHHhcCCChhhHHHhhhCHHHHHHHHHHHHHcccCCCCchhhhHHHHHHHhhCCCCCCCchHHHHHHHhcCC
Q 003751 7 GDKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHRPTLLLYIVSSK 86 (798)
Q Consensus 7 ~~~~~~~~~f~~iGl~e~ka~e~~kn~~~~~~l~~~I~~a~~~~~~~~~~g~lly~la~~~~~~~~~~~~~~~~yI~~~~ 86 (798)
..+++++++|++|||+|+||+||+||++|+++|..+|++|++..+||+++|+|||+|||+++++..+||++|++||++|+
T Consensus 3 ~~~~~~~~~f~~IGL~e~kAketlKN~klt~~L~~iI~ea~~~~~~dk~~g~LLy~LAtk~~~~~~~~r~~lv~~I~~gk 82 (788)
T PLN02859 3 ANSEKPLELFLKIGLDERTARNAIANNKVTSNLTAVIHEAGVTNGCDKTVGNLLYTVATKYPANALVHRPTLLSYIVSSK 82 (788)
T ss_pred CccHHHHHHHHHcCCChHHHHHHHhCHHHHHHHHHHHHhcCCccCCChHHHHHHHHHHHhcCCccchhHHHHHHHHHhCC
Confidence 45778999999999999999999999999999999999999987799999999999999999888999999999999999
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhhCCCC
Q 003751 87 IKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWA 166 (798)
Q Consensus 87 ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~~RY~~n~g~l~~~~r~~lkwa 166 (798)
|+|++||+||++|+++++.+++|.++||++|||||+||+|||+++|+++|++||++|+++||++|+|.||++||+.||||
T Consensus 83 IkT~~Ql~AA~kYl~~~~~~~~d~~~Fek~CGVGV~VT~EqI~~~V~~~i~~~k~~il~~RY~~n~g~ll~~~r~~Lkwa 162 (788)
T PLN02859 83 IKTPAQLEAAFSFFSSTGPESFDLNKFEEACGVGVVVSPEDIEAAVNEVFEENKEKILEQRYRTNVGDLLGQVRKRLPWA 162 (788)
T ss_pred CCCHHHHHHHHHHHHhCCCCccCHHHHHHhCCCCEEECHHHHHHHHHHHHHhhHHHHHHhcccccHHHHHHHHHhhCCCC
Confidence 99999999999999999877999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCchhhhhhhhhhhhhhhccCCCcchhhccccCCCCCCCCccccCCCCCCCCCCCCcccccc
Q 003751 167 DPKIVKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNFPPPEENYKQVHT 246 (798)
Q Consensus 167 d~~~~k~~~d~~~l~lLgpK~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~n~~~~~~ 246 (798)
|++.||++||+++++||||||++|.+|++|+++ +++++++++ ......++|+|||+++++.||+||||+ +++.
T Consensus 163 d~~~~k~~id~~~~~llg~k~~~d~~~~~k~~k-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~en~-~~~~ 235 (788)
T PLN02859 163 DPKIVKKLIDKKLYELLGEKTAADNEKPVKKKK-----EKPAKVEEK-KVAVAAAPPSEEELNPYSIFPQPEENF-KVHT 235 (788)
T ss_pred CHHHHHHHHHHHHHHhcCCcchhhhcccccccc-----ccccccccc-cccccccccchhhccccccCCCccccc-cccc
Confidence 999999999999999999999999886555421 111111111 112345899999999999999999999 9999
Q ss_pred ccccCCCccccccCcHHHHHHhhhhcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHH
Q 003751 247 EIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEY 326 (798)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~hl~~~~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~ 326 (798)
.+++++|+++...||+++|++||++|+|+|+|||||||||||||||||+|++||++||++||+|+||||||||+|+.++|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~hl~~t~g~V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDTdp~r~~~e~ 315 (788)
T PLN02859 236 EVFFSDGSVLRPSNTKEILEKHLKATGGKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEY 315 (788)
T ss_pred eeeccccccccccCcHHHHHHHHhhcCCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhc
Q 003751 327 IDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRN 406 (798)
Q Consensus 327 ~~~I~edL~wLGl~pd~i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~ 406 (798)
+++|+++|+|||++||+++|||+||+.+|++|.+||++|+||+|+||+++|++.|..+.+|+||+++++|+|.+|++|+.
T Consensus 316 ~~~I~edL~WLG~~~d~~~~qSd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~~~sp~Rd~s~eenl~lfe~m~~ 395 (788)
T PLN02859 316 IDHIEEIVEWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRR 395 (788)
T ss_pred HHHHHHHHHHcCCCCCCcccccHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhhccCCCCCCChHHhhhhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred CcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHH
Q 003751 407 GRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFW 486 (798)
Q Consensus 407 G~~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~ 486 (798)
|.+.+|++|||||+||.++|+.|+|+|+||+.+.+||++|++|++|||||||||||||+|||||||||.||++||++|+|
T Consensus 396 g~~~~G~~vlR~Kid~~~~n~~~rD~V~~RI~~~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~w 475 (788)
T PLN02859 396 GLIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYW 475 (788)
T ss_pred chhccCCeEEEEeccCCCCCceeeeceeEEEeccCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCceeeeeeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCc-cc
Q 003751 487 LLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS-LI 565 (798)
Q Consensus 487 L~~aLg~~~P~~w~f~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~-~~ 565 (798)
|+++|||+.|.+|||+|||++|++||||++.++|++|+|+||||||++||++||||||+|+||+|||+.+|||.+++ .+
T Consensus 476 l~~aLg~~~P~~~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~~~e~i 555 (788)
T PLN02859 476 LLDSLGLYQPYVWEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLI 555 (788)
T ss_pred HHHHcCCCCCcEEeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988 89
Q ss_pred cHhhHHHHHHHhhhccCCcceeEecceeEEEEeCCCCceeeeccccCCCCCCCCCCceeEeccccceeeecccccccCCc
Q 003751 566 RLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSK 645 (798)
Q Consensus 566 ~~~~Le~~ir~~~~~~~~R~~av~dp~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~ 645 (798)
+++.|++++++.++..+||+|+|+||+||+|+|+|++..+.+.+|.||.+|.++++|+|.|+|++.||||++||++.+++
T Consensus 556 ~~~~Le~~~r~~l~~~a~R~maV~dp~kv~i~n~~~~~~~~~~~~~~P~~p~~~~~g~r~v~f~~~iyIe~~D~~~~~~~ 635 (788)
T PLN02859 556 RMDRLEHHIREELNKTAPRTMVVLHPLKVVITNLESGEVIELDAKRWPDAQNDDPSAFYKVPFSRVVYIERSDFRLKDSK 635 (788)
T ss_pred cHHHHHhhCHHhhCCcCcchheecCCeEEEEecCCCCceeecccccCCCCCCCccCceEEEEECCeEEEEhHHhhccccc
Confidence 99999999999999999999999999999999999988888899999998889999999999999999999999999999
Q ss_pred cccCcCCCCEEEEeeeeeEEEEEeeecCCCCCEEEEEEEEcCCCCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCC
Q 003751 646 DYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSEN 725 (798)
Q Consensus 646 ~~~~l~~g~~v~l~~~~~i~~~~~~~~~~~g~v~e~~~~~~~~~~~K~k~~I~WV~~~~~~~~~v~~evr~y~~Lf~~~~ 725 (798)
+|+||+||++|+|+|+|+|+|++++.+|++|+|++|+|+|+++...|||++|||||+++++.++++||+|+|++||++++
T Consensus 636 ~~~rL~pg~~V~L~~~~~i~~~~~~~~d~~g~v~el~~~~d~~~~~K~k~~ihWvs~~~~~~~~~~~e~r~yd~Lf~~~~ 715 (788)
T PLN02859 636 DYYGLAPGKSVLLRYAFPIKCTDVVLADDNETVVEIRAEYDPEKKTKPKGVLHWVAEPSPGVEPLKVEVRLFDKLFLSEN 715 (788)
T ss_pred cceecCCCCEEEEcceeEEEEEEEEEeCCCCCEEEEEEEEccCCCCccCceEEeeecCCCCCCceeEEEEeehhhcCCCC
Confidence 99999999999999999999999886788999999999999987789999999999865566789999999999999999
Q ss_pred CCCccCccccCCCCCceeecceeeccccccCCCCCeEEEEEeeeEEEecCCCCCCeeEeeecCCCCCCCCCCC
Q 003751 726 PAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPKGGK 798 (798)
Q Consensus 726 p~~~~~~~~~iN~~S~~~~~~a~~e~~~~~~~~~~~~QfeR~Gyf~~D~~s~~~~~v~n~~v~lk~~~~k~~~ 798 (798)
|++.++|+++|||+|++++.+|++|+++.++++|++|||||+||||||+||+++++||||||+||++++|..|
T Consensus 716 p~~~~~~~~~iNp~S~~v~~~a~~e~~~~~~~~~~~~QfeR~GYF~~D~ds~~~~~vfNr~v~Lkd~~~k~~~ 788 (788)
T PLN02859 716 PAELEDWLEDLNPQSKEVISGAYAVPSLKDAKVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSYGKGGK 788 (788)
T ss_pred CcccccHHHhCCCCccEEEeceEEcHhHhhCCCCCeEEEEeeeEEeccCCCCCCCeEEEeeeeccccccccCC
Confidence 9988899999999999999899999999999999999999999999999999999999999999999999765
No 3
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-150 Score=1273.16 Aligned_cols=543 Identities=48% Similarity=0.864 Sum_probs=519.6
Q ss_pred CCCCCCCCCccccccccccCCCccccccCcHHHHHHhhhhcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEE
Q 003751 232 SNFPPPEENYKQVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCY 311 (798)
Q Consensus 232 ~~~~~p~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~hl~~~~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~i 311 (798)
+.||..+++. . .+|+ .|||+++++|++.++|+|+|||||||||||||||||+|++||++||++||+|+
T Consensus 20 ~~~~~~~~~~-~-------~~~~----~~~~~~~~~~~~~~~gkv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~i 87 (574)
T PTZ00437 20 RDLSLLQTGR-P-------VPGC----RNTPELLEKHEAVTGGKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCY 87 (574)
T ss_pred cchhhhcccC-C-------Cccc----CCCHHHHHHHhcccCCcEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEE
Confidence 3667766665 2 2233 68899999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCcccchHHHHHHHHHHHHHcCCCCCcccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCC
Q 003751 312 LRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRD 391 (798)
Q Consensus 312 LRidDTDp~Re~~e~~~~I~edL~wLGl~pd~i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~ 391 (798)
||||||||+|+.++|+++|+++|+|||++||+++|||+||+.||++|++||++|+||+|+||+++|++.|+.+.+|+||+
T Consensus 88 LRiEDTDp~r~~~e~~~~I~~dL~wLGi~~D~~~~qS~y~~~~ye~A~~Li~~G~AY~C~cs~eei~~~R~~~~~~~~R~ 167 (574)
T PTZ00437 88 LRYDDTNPETEEQVYIDAIMEMVKWMGWKPDWVTFSSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQQREQREDSPWRN 167 (574)
T ss_pred EEECCCCccccChHHHHHHHHHHHHcCCCCCCCCcCchhHHHHHHHHHHHHHcCCEEEcCCCHHHHHHHhhcccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred CChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceE
Q 003751 392 RPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHS 471 (798)
Q Consensus 392 ~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHv 471 (798)
++++|||++|++|++|.+.+|++|||+|+||.++|++|+|+|+||+.+.+||++||+|+||||||||||||||+||||||
T Consensus 168 ~~~eenL~lfe~M~~g~~~~g~~vlR~K~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~~iyPtYdFa~~vdD~l~gITHv 247 (574)
T PTZ00437 168 RSVEENLLLFEHMRQGRYAEGEATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKWCIYPSYDFTHCLIDSLEDIDYS 247 (574)
T ss_pred CCHHHHHHHHHHHhhcccccCCeEEEEeCcCCCCCCccccCeeeeeccCCcCCCCCceEEEccCcccceeechhcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccccchhhHHHHHHHhCCCCCceeeeeeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHH
Q 003751 472 LCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINA 551 (798)
Q Consensus 472 iRG~E~~~~t~~q~~L~~aLg~~~P~~w~f~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~ 551 (798)
|||.||.++++.|+||+++|+++.|.+|+|+|||++|++||||++.++|++|+|+||||||++||++||||||+|+||++
T Consensus 248 lct~Ef~~r~~~y~wl~~~l~l~~p~~~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~ 327 (574)
T PTZ00437 248 LCTLEFETRRESYFWLLEELNLWRPHVWEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINR 327 (574)
T ss_pred eeechhhcccHHHHHHHHHhCCcccceEeeeeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCccccHhhHHHHHHHhhhccCCcceeEecceeEEEEeCCCCceeeeccccCCCCCCCCCCceeEeccccc
Q 003751 552 FVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNV 631 (798)
Q Consensus 552 fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~dp~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~ 631 (798)
||..+|||+++++++|+.|++++|+.+++.++|.|+|+||++|+|+|++.. ..+++|+||+ +|++|+|+++|++.
T Consensus 328 f~~~~G~sk~~~~i~~~~Le~~nR~~ld~~a~R~~~V~dPv~v~I~n~~~~--~~~~~p~hP~---~~~~G~R~i~~~~~ 402 (574)
T PTZ00437 328 FCELVGITRSMNVIQISMLENTLREDLDERCERRLMVIDPIKVVVDNWKGE--REFECPNHPR---KPELGSRKVMFTDT 402 (574)
T ss_pred HHHHhCCCccceEeeHHHHHHHHHHHhcccCccceEEccceEEEEecCCCc--eEEeccCCCC---CCcCceEEEEEcCe
Confidence 999999999999999999999999999999999999999999999998754 4677899888 79999999999999
Q ss_pred eeeeccccc-ccCCccccCcCCCC-EEEEeeeeeEEEEEeeecCCCCCEEEEEEEEcCCCCCCCCeeEEeccCCCCCCCC
Q 003751 632 VYIEHSDFR-MKDSKDYYGLAPGK-SVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNP 709 (798)
Q Consensus 632 iyIe~~D~~-~~~~~~~~~l~~g~-~v~l~~~~~i~~~~~~~~~~~g~v~e~~~~~~~~~~~K~k~~I~WV~~~~~~~~~ 709 (798)
||||++||+ +.++++|+||+||+ .|+|+++|||+|+++. +|++|+|++++|.++++..+|+|++|||||+ .++
T Consensus 403 iyIe~~D~~~~~~~~~f~rL~~g~~~vrL~~~~~i~~~~~~-~d~~g~v~~~~~~~d~~~~~k~k~~IhWvs~----~~~ 477 (574)
T PTZ00437 403 FYVDRSDFRTEDNNSKFYGLAPGPRVVGLKYSGNVVCKGFE-VDAAGQPSVIHVDIDFERKDKPKTNISWVSA----TAC 477 (574)
T ss_pred EEEEHHHhhcccccccceecCCCCeEEEeccEEEEEEEEEE-ECCCCCEEEEEEEecccccccCCCeEEEeec----CCc
Confidence 999999998 66789999999997 8999999999999998 8889999999999998877889999999997 468
Q ss_pred eeEEEEeccccCCCCCCCCccCccccCCCCCceeecceeeccccccCCCCCeEEEEEeeeEEEecCCCCCCeeEeeecCC
Q 003751 710 LRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTL 789 (798)
Q Consensus 710 v~~evr~y~~Lf~~~~p~~~~~~~~~iN~~S~~~~~~a~~e~~~~~~~~~~~~QfeR~Gyf~~D~~s~~~~~v~n~~v~l 789 (798)
++|+||+|++||++++|+..++|+++|||+|+.+. .|++|+++.++++|++|||||+|||+||+||+++++||||||+|
T Consensus 478 v~~evr~Yd~Lf~~~~p~~~~~~~~~iNp~s~~~~-~g~~E~~~~~~~~~~~~QfeR~Gyf~vD~ds~~~~~vfNr~v~L 556 (574)
T PTZ00437 478 TPVEVRLYNALLKDDRAAIDPEFLKFIDEDSEVVS-HGYAEKGIENAKHFESVQAERFGYFVVDPDTRPDHLVMNRVLGL 556 (574)
T ss_pred eeEEEEeccccccCCCCCccccHhhhCCCCceEEE-EEEEchhhhhCCCCCeEEEEEeEEEEeCCCCCCCCEEEEeeeEc
Confidence 99999999999999999887899999999999987 59999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 003751 790 KDSFPKGG 797 (798)
Q Consensus 790 k~~~~k~~ 797 (798)
|++++|.+
T Consensus 557 kd~~~K~~ 564 (574)
T PTZ00437 557 REDKEKAT 564 (574)
T ss_pred cccccccc
Confidence 99987753
No 4
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.1e-147 Score=1247.14 Aligned_cols=526 Identities=54% Similarity=0.927 Sum_probs=503.4
Q ss_pred HHHHHHhhhhc-CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCC
Q 003751 262 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 340 (798)
Q Consensus 262 ~~~~~~hl~~~-~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~ 340 (798)
.+++.+.|+.- .|+|+|||||||||||||||||+|++||++||++||+|+||||||||+|+.++|+++|+++|+|||+.
T Consensus 15 ~~~~~~dl~~~~~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLGi~ 94 (554)
T PRK05347 15 RQIIDEDLASGKHTRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKEDVRWLGFD 94 (554)
T ss_pred HHHHHhHHhcCCcCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCcCChHHHHHHHHHHHHcCCC
Confidence 56677776654 46899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-cccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhcc----CCCCCCCCCChHHHHHHHHHhhcCcccCCceE
Q 003751 341 PF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREK----KMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 415 (798)
Q Consensus 341 pd-~i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~----~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~ 415 (798)
|| +++|||+||+.||++|++||++|+||+|+||+++|++.|+. +++|+||++|+||++++|++|++|.+.+|++|
T Consensus 95 ~d~~~~~qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~~R~~~~~~g~~~~~R~~s~eenl~~~~~m~~G~~~~g~~v 174 (554)
T PRK05347 95 WSGELRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKNSPYRDRSVEENLDLFERMRAGEFPEGSAV 174 (554)
T ss_pred CCCCceeeecCHHHHHHHHHHHHHcCCEeeCCCCHHHHHHHhhhhhhcCCCCCccCCCHHHHHHHHHHHHCCCCCCCcEE
Confidence 95 79999999999999999999999999999999999999874 88999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCC-C
Q 003751 416 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-Y 494 (798)
Q Consensus 416 lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~-~ 494 (798)
||+|+|+.++|++|+|+|+||+.+.+||++|++|++|||||||||||||+|||||||||.||++||++|.||+++||+ +
T Consensus 175 lR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~~iyPtYdfA~~vdD~l~gITHvlRg~E~~~~t~~~~~i~~alg~~~ 254 (554)
T PRK05347 175 LRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKWCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDWVLDNLPIPP 254 (554)
T ss_pred EEEEeeccCCCCCCCCCEEEEecCCCCCccCCceeeecCcCccceeeccccCCceEEeccccccChHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985 5
Q ss_pred CCceeeeeeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHH
Q 003751 495 QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 574 (798)
Q Consensus 495 ~P~~w~f~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~i 574 (798)
.|.+|+|+|||++|+|||||++.++|++|.|.||||||++||++||||||+|+||++||+.+|||.+++.++|+.|++++
T Consensus 255 ~P~~~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~n 334 (554)
T PRK05347 255 HPRQYEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLESCI 334 (554)
T ss_pred CCceEEEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCcceeEecceeEEEEeCCCCceeeeccccCCCCCCCCCCceeEeccccceeeecccccccCCccccCcCCCC
Q 003751 575 REELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGK 654 (798)
Q Consensus 575 r~~~~~~~~R~~av~dp~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~ 654 (798)
|+.+++.+||.|+|+||++|+|+|++++..+.+++|+||+ +|++|+|.++|+++||||++||++.++++|+||+||+
T Consensus 335 Rk~ld~~a~R~m~V~~pv~v~i~n~~~~~~~~~~~p~hP~---~~~~G~r~i~~~~~iyIe~~D~~~~~~~~~~rl~~g~ 411 (554)
T PRK05347 335 REDLNENAPRAMAVLDPLKLVITNYPEGQVEELEAPNHPE---DPEMGTREVPFSRELYIEREDFMEEPPKKYFRLVPGK 411 (554)
T ss_pred HHHhccCCCceEEEcCCeEEEEEeCCCCceEEEEecCCCC---CCcCceEEEEEcCeEEEEhHHhhccccccccccCCCC
Confidence 9999999999999999999999999887777789999988 7999999999999999999999999999999999999
Q ss_pred EEEEeeeeeEEEEEeeecCCCCCEEEEEEEEcCC-------CCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCC
Q 003751 655 SVLLRYAFPIKCTEVILSDDKETILHIRAEYDPS-------KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPA 727 (798)
Q Consensus 655 ~v~l~~~~~i~~~~~~~~~~~g~v~e~~~~~~~~-------~~~K~k~~I~WV~~~~~~~~~v~~evr~y~~Lf~~~~p~ 727 (798)
+|+|+++++|+|++++ +|++|.|++++|+|+++ ..+|+|++|||||+ .++++|+||+|++||++++|+
T Consensus 412 ~vrL~~~~~i~~~~~~-kd~~g~v~~~~~~~~~~~~~g~~~~~kk~k~~IhWv~~----~~~v~~~v~~yd~Lf~~~~p~ 486 (554)
T PRK05347 412 EVRLRNAYVIKCEEVV-KDADGNITEIHCTYDPDTLSGNPADGRKVKGTIHWVSA----AHAVPAEVRLYDRLFTVPNPA 486 (554)
T ss_pred EEEecCEEEEEEEEEE-EcCCCCEEEEEEEEccccccCCCccCcccCCEEEeeec----CCCEeEEEEEeccccCCCCCC
Confidence 9999999999999998 88999999999999875 33688899999997 468999999999999999999
Q ss_pred CccCccccCCCCCceeecceeeccccccCCCCCeEEEEEeeeEEEecCCCCCCeeEeeecCCCCCCCCC
Q 003751 728 ELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPKG 796 (798)
Q Consensus 728 ~~~~~~~~iN~~S~~~~~~a~~e~~~~~~~~~~~~QfeR~Gyf~~D~~s~~~~~v~n~~v~lk~~~~k~ 796 (798)
+.++|+++|||+|+.+. .|++|+++.++++|++|||||+|||+||++++++++||||||+||++++|.
T Consensus 487 ~~~~~~~~iN~~s~~~~-~~~~E~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~v~n~~v~l~d~~~k~ 554 (554)
T PRK05347 487 AGKDFLDFLNPDSLVIK-QGFVEPSLADAKPEDRFQFEREGYFCADKDSTPGKLVFNRTVGLRDSWAKI 554 (554)
T ss_pred ccccHhHhcCCCceEEE-eEEEcHHHhhCCCCCEEEEEEeeEEEecCCCCCCCeEEEeeeecccccCCC
Confidence 88899999999999765 799999999999999999999999999999999999999999999998874
No 5
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=100.00 E-value=2.9e-143 Score=1258.25 Aligned_cols=528 Identities=46% Similarity=0.852 Sum_probs=506.4
Q ss_pred HHHHHHhhhh-cCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCC
Q 003751 262 KEVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 340 (798)
Q Consensus 262 ~~~~~~hl~~-~~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~ 340 (798)
.+++++||+. +.|+|+|||||||||||||||||+|++||++||++||+|+||||||||+|+.++|+++|+++|+|||++
T Consensus 17 ~~~~~~~l~~g~~~~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDTd~~r~~~e~~~~I~~dl~wLG~~ 96 (771)
T PRK14703 17 TEIIEEDLEAGRYPRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDDVRWLGFD 96 (771)
T ss_pred HHHHHHHHhcCCCCceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCcCChHHHHHHHHHHHHcCCC
Confidence 7899999998 788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc-ccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhc----cCCCCCCCCCChHHHHHHHHHhhcCcccCCceE
Q 003751 341 PFK-ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 415 (798)
Q Consensus 341 pd~-i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~----~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~ 415 (798)
||+ ++|||+||+.||++|++||++|+||+|+||+++|++.|+ .+++|+||++|++|++.+|++|+.|.+.+|++|
T Consensus 97 wd~~~~~qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~r~~~~~~g~~~~~R~~s~ee~l~~~~~m~~G~~~~g~~v 176 (771)
T PRK14703 97 WGEHLYYASDYFERMYAYAEQLIKMGLAYVDSVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFPDGAHV 176 (771)
T ss_pred CCCCceEeecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHHHHHhCCCCcCCCeE
Confidence 995 799999999999999999999999999999999999987 689999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCC-C
Q 003751 416 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-Y 494 (798)
Q Consensus 416 lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~-~ 494 (798)
||+|+||.++|++|+|+|+||+...+||++||+||+|||||||||||||+|||||||||.||.+||+.|.||+++||+ .
T Consensus 177 lR~Kid~~~~n~~~rD~v~~R~~~~~H~~~Gd~~~i~PtYdfa~~vdD~l~gITHvlRg~E~~~~~~~~~~l~~~l~~~~ 256 (771)
T PRK14703 177 LRAKIDMSSPNMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDWVLDHLGPWP 256 (771)
T ss_pred EEEEeeccCCcccCCCCEEEEEcCCCCCCcCCCCCcCCCccccceeeccccCCcEEEecHhhhhccHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999964 3
Q ss_pred -CCceeeeeeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHH
Q 003751 495 -QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 573 (798)
Q Consensus 495 -~P~~w~f~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 573 (798)
.|.+|+|+|||+.|++||||++.++|++|.|+||||||++||++||||||+|+||++||..+|||+++++++|+.|+++
T Consensus 257 ~~P~~~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~~~~i~~~~L~~~ 336 (771)
T PRK14703 257 PRPRQYEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKTNSTVDIGVLEFA 336 (771)
T ss_pred CCcceeEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCccCceecHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCcceeEecceeEEEEeCCCCceeeeccccCCCCCCCCCCceeEeccccceeeecccccccCCccccCcCCC
Q 003751 574 IREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPG 653 (798)
Q Consensus 574 ir~~~~~~~~R~~av~dp~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~~l~~g 653 (798)
+|+.+++.+||+|+|+||++|+|+|++++....+.+|+||++ .|++|+|.|+|+++||||++||++.++++|+||+||
T Consensus 337 ~R~~ld~~a~R~~~V~~p~~v~i~n~~~~~~~~~~~p~hp~~--~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~g 414 (771)
T PRK14703 337 IRDDLNRRAPRVMAVLDPLKVVIENLPAGKVEELDLPYWPHD--VPKEGSRKVPFTRELYIERDDFSEDPPKGFKRLTPG 414 (771)
T ss_pred HHHHhccCCCceEEEcCCeEEEEEeCCCCceEEEeccCCCCC--CccCceEEEEEcCeEEEEhhHhhccccccccccCCC
Confidence 999999999999999999999999998877788899999982 289999999999999999999999999999999999
Q ss_pred CEEEEeeeeeEEEEEeeecCCCCCEEEEEEEEcCCC------CCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCC
Q 003751 654 KSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSK------KTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPA 727 (798)
Q Consensus 654 ~~v~l~~~~~i~~~~~~~~~~~g~v~e~~~~~~~~~------~~K~k~~I~WV~~~~~~~~~v~~evr~y~~Lf~~~~p~ 727 (798)
++|+|+++|+|+|+++. +|++|.|++++|+|+++. .+|++++|||||. .++++|+||+|++||++++|+
T Consensus 415 ~~vrL~~~~~i~~~~~~-kd~~G~v~~~~~~~~~~~~~~~~~~~k~k~~ihWv~~----~~~v~~~vr~Yd~Lf~~~~p~ 489 (771)
T PRK14703 415 REVRLRGAYIIRCDEVV-RDADGAVTELRCTYDPESAKGEDTGRKAAGVIHWVSA----KHALPAEVRLYDRLFKVPQPE 489 (771)
T ss_pred CEEEecceEEEEEEEEE-EcCCCCEEEEEEEEeCCCcCCCccCCcCCcEEEEeec----CCCeeEEEEecccccCCCCCC
Confidence 99999999999999999 899999999999998763 3678999999997 468999999999999999998
Q ss_pred -CccCccccCCCCCceeecceeeccccccCCCCCeEEEEEeeeEEEec-CCCCCCeeEeeecCCCCCCCCCC
Q 003751 728 -ELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDK-DSTPEKLVFNRTVTLKDSFPKGG 797 (798)
Q Consensus 728 -~~~~~~~~iN~~S~~~~~~a~~e~~~~~~~~~~~~QfeR~Gyf~~D~-~s~~~~~v~n~~v~lk~~~~k~~ 797 (798)
..++|+++|||+|+.+. .|++||++.++++|++|||||+|||+||+ ||+++++||||||+||++++|.+
T Consensus 490 ~~~~~~~~~lN~~Sl~~~-~g~~e~~~~~~~~~~~~QfeR~Gyf~~D~~d~~~~~~vfNr~v~lkd~~~~~~ 560 (771)
T PRK14703 490 AADEDFLEFLNPDSLRVA-QGRVEPAVRDDPADTRYQFERQGYFWADPVDSRPDALVFNRIITLKDTWGARA 560 (771)
T ss_pred ccccchHhhcCCCCceeE-ccEEcHhHhhCCCCCEEEEEEeEEEEEccCCCCCCCeEEEeecccCccccccc
Confidence 45799999999999998 58999999999999999999999999996 78899999999999999998654
No 6
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=100.00 E-value=4.3e-143 Score=1211.66 Aligned_cols=508 Identities=51% Similarity=0.874 Sum_probs=487.7
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCC-cccCCchhHHHH
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPF-KITYTSDYFQEL 354 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd-~i~yqSd~~~~~ 354 (798)
|+|||||||||||||||||||++||++||++||+|+||||||||+|+.++|+++|+++|+|||++|| .++|||+||+.|
T Consensus 1 V~tRFaPsPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLG~~~d~~~~~qS~~~~~~ 80 (522)
T TIGR00440 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVEWLGFKWEGKIRYSSDYFDEL 80 (522)
T ss_pred CeEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCcccCChHHHHHHHHHHHHcCCCCCCCceEccccHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999995 689999999999
Q ss_pred HHHHHHHHHcCCccccCCCHHHHHHHhc----cCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCCcC
Q 003751 355 YELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMY 430 (798)
Q Consensus 355 ye~a~~LI~~G~AY~C~cs~eel~~~r~----~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~ 430 (798)
|++|++||++|+||+|+||+++|++.|+ ++|+|+||++|+||++++|++|++|.+.+|++|||+|+|+.++++.|+
T Consensus 81 ~~~a~~Li~~G~AY~c~cs~eel~~~R~~~~~~g~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~vlR~Kid~~~~n~~~r 160 (522)
T TIGR00440 81 YRYAEELIKKGLAYVDELTPEEIREYRGTLTDPGKNSPYRDRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMR 160 (522)
T ss_pred HHHHHHHHHcCCEEeecCCHHHHHHhhhhcccCCCCCcccCCCHHHHHHHHHHHhcCcccCCCeEEEEeCcCCCCCceEe
Confidence 9999999999999999999999999985 689999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCC-CCceeeeeeecCCCe
Q 003751 431 DLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNVSNT 509 (798)
Q Consensus 431 D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~-~P~~w~f~~Ln~~g~ 509 (798)
|+|+||+.+.+|+++|++|++|||||||||||||+|||||||||.||++||+.|.||+++++++ .|.+|+|+|||++|+
T Consensus 161 D~V~~Ri~~~~h~~~gdk~~iyPtYdfa~~vdD~l~gITHviRg~E~~~nt~~Y~~~~~~l~~~~~P~~~~F~rln~~~~ 240 (522)
T TIGR00440 161 DPVAYRIKFAPHHQTGTKWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQYEFSRLNLEGT 240 (522)
T ss_pred eeeEEEEecCCCCCCCCCeeEEeCcCCceeehhccCCCceEeecHhhhhcHHHHHHHHHhcCccCCCceEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred eeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhhhccCCcceeEe
Q 003751 510 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVL 589 (798)
Q Consensus 510 KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~ 589 (798)
|||||++..+|++|+|+||||||++||++||||||+|+||+|||+.+|||+++..+++..|++++++|++++++|+|+|+
T Consensus 241 kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~~~r~f~~~~~~r~~av~ 320 (522)
T TIGR00440 241 VLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLESCIREDLNENAPRAMAVI 320 (522)
T ss_pred CcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHHHHHHhhhhcCccccccc
Confidence 99999999999999999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred cceeEEEEeCCCCceeeeccccCCCCCCCCCCceeEeccccceeeecccccccCCccccCcCCCCEEEEeeeeeEEEEEe
Q 003751 590 NPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEV 669 (798)
Q Consensus 590 dp~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~ 669 (798)
||.||+|+|++... +..++|+||+ ++++|+|.++|++.||||++||++.++++|+||+||++|+|+++|+|+|+++
T Consensus 321 d~~kl~i~~~~~~~-~~~~~p~~p~---~~~~g~r~v~~~~~i~Ie~~D~~~~~~~~f~~l~~g~~vrL~~~~~i~~~~~ 396 (522)
T TIGR00440 321 DPVEVVIENLSDEY-ELATIPNHPN---TPEFGERQVPFTNEFYIDRADFREEANKQYKRLVLGKEVRLRNAYVIKAERV 396 (522)
T ss_pred ccceEEEecCCCCc-eEEeccCCCC---ChhHeeEEEEecceeEEEHHHhhccccccccccCCCCEEEeCCEEEEEEEEE
Confidence 99999999997653 3567888887 7899999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCEEEEEEEEcCC-------CCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCce
Q 003751 670 ILSDDKETILHIRAEYDPS-------KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKV 742 (798)
Q Consensus 670 ~~~~~~g~v~e~~~~~~~~-------~~~K~k~~I~WV~~~~~~~~~v~~evr~y~~Lf~~~~p~~~~~~~~~iN~~S~~ 742 (798)
+ +|++|.|++++|+|+++ ..+|+|++|||||+ .++++||+|+|++||++++|++.++|++++||+|+.
T Consensus 397 ~-~d~~G~v~~~~~~~~~~~~~~~~~~~kk~k~~IhWv~~----~~~~~~evr~yd~Lf~~~~p~~~d~~~~~~np~s~~ 471 (522)
T TIGR00440 397 E-KDAAGKITTIFCTYDNKTLGKEPADGRKVKGVIHWVSA----SSKYPTETRLYDRLFKVPNPGAPDDFLSVINPESLV 471 (522)
T ss_pred E-ecCCCCEEEEEEEEccccccCCccccccCCcEEEeeec----CCCeeEEEEecccccCCCCCCccccHhhhCCCCceE
Confidence 8 88999999999999874 33788999999997 468999999999999999999889999999999998
Q ss_pred eecceeeccccccCCCCCeEEEEEeeeEEEe-cCCCCCCeeEeeecCCCCCC
Q 003751 743 VIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSF 793 (798)
Q Consensus 743 ~~~~a~~e~~~~~~~~~~~~QfeR~Gyf~~D-~~s~~~~~v~n~~v~lk~~~ 793 (798)
+. +|++|+++.++++|++|||||+|||+|| .+|+++++||||||+||+++
T Consensus 472 ~~-~~~~E~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~~v~Nr~v~l~d~~ 522 (522)
T TIGR00440 472 IK-QGFMEHSLGDAVANKRFQFEREGYFCLDSKESTTEKVVFNRTVSLKDAT 522 (522)
T ss_pred EE-EEEEchhHhhCCCCCEEEEEEeEEEEEccCCCCCCCeEEEeeeecCCCC
Confidence 76 6999999999999999999999999999 47889999999999999975
No 7
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=100.00 E-value=3.7e-136 Score=1153.84 Aligned_cols=501 Identities=33% Similarity=0.527 Sum_probs=470.9
Q ss_pred hcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCcccCCchh
Q 003751 271 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDY 350 (798)
Q Consensus 271 ~~~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~i~yqSd~ 350 (798)
+++|+|+|||||||||||||||||||++||++||++||+|+||||||||+|+.++|+++|+++|+|||++||+++|||+|
T Consensus 7 a~~g~v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDTDp~R~~~e~~~~I~~dL~WLGl~wD~~~~qSdr 86 (523)
T PLN03233 7 AIAGQIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDLGKIEIKPDSVSFTSDY 86 (523)
T ss_pred CCCCeEEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCccchHHHHHHHHHHHHhCCCCCCCcccccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCCcC
Q 003751 351 FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMY 430 (798)
Q Consensus 351 ~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~ 430 (798)
|+.||++|++||++|+||+|+||+++|++.|+.+++|+||+++++|++++|++|++|.+.+|++++|+|+++.+++.+|+
T Consensus 87 ~~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~n~~~~ 166 (523)
T PLN03233 87 FEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLR 166 (523)
T ss_pred HHHHHHHHHHHHHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCCCCCCc
Confidence 99999999999999999999999999999998889999999999999999999999998889999999999999999999
Q ss_pred ccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCCceeeeeeecCCCee
Q 003751 431 DLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTV 510 (798)
Q Consensus 431 D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~w~f~~Ln~~g~K 510 (798)
|+|+||+...+||++|++|+||||||||||||||+|||||||||.||++||++|.||+++|||+.|.||+|+|||+.|+|
T Consensus 167 D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg~~~P~~~~f~rln~~~~k 246 (523)
T PLN03233 167 DPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRIHAFARMNFMNTV 246 (523)
T ss_pred CCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhCCCCCeeeeeEEECCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhhhccCCcceeEe-
Q 003751 511 MSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVL- 589 (798)
Q Consensus 511 LSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~- 589 (798)
||||++.++|++|.|+||||||++||++||||||+|+||++||+.+|+|.+++.++|+.||+++|+.+++.+||+|+|.
T Consensus 247 LSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nR~~ld~~a~R~m~V~~ 326 (523)
T PLN03233 247 LSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAENKKEIDKRAKRFMAIDK 326 (523)
T ss_pred ccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHHHHHHHHHHhcccCCceEEEcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -cceeEEEEeCCCCce-eeeccccCCCCCCCCCCceeEeccccceeeecccccccCCccccCcCCCCEEEEeeeeeEEEE
Q 003751 590 -NPLKVVITNMESGTI-MHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCT 667 (798)
Q Consensus 590 -dp~kl~i~N~~~~~~-~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~ 667 (798)
||+||+|+|+|.+.. +.+.+|+||+ +|++|+|+|+|+++||||++||+ +|+||++|+|++.+||+|+
T Consensus 327 ~~pv~v~i~n~~~~~~~~~~~~p~hP~---~~~~G~r~v~~~~~iyIe~~D~~--------~l~~g~~vrL~~~~~i~~~ 395 (523)
T PLN03233 327 ADHTALTVTNADEEADFAFSETDCHPK---DPGFGKRAMRICDEVLLEKADTE--------DIQLGEDIVLLRWGVIEIS 395 (523)
T ss_pred CCcEEEEecCCCCccceeccccccCCC---CCCCceEEEEECCcEEEEHhHHh--------hcCCCCEEEeCceeeEEEE
Confidence 699999999987642 2347899888 79999999999999999999997 4999999988888999999
Q ss_pred EeeecCCCCCEEEEEEEEcCCCCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCceeecce
Q 003751 668 EVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEA 747 (798)
Q Consensus 668 ~~~~~~~~g~v~e~~~~~~~~~~~K~k~~I~WV~~~~~~~~~v~~evr~y~~Lf~~~~p~~~~~~~~~iN~~S~~~~~~a 747 (798)
+++ +|..|+++ . +. ..+|+|++|||||+. .+.++|++|+|++||++++|++.++|+++|||+|+.+. +|
T Consensus 396 ~~~-~d~~~~~~---~--~~-d~~~~k~~I~Wv~~~---~~~~~~~~~~yd~L~~~~~~~~~~~~~~~~n~~S~~~~-~~ 464 (523)
T PLN03233 396 KID-GDLEGHFI---P--DG-DFKAAKKKISWIADV---SDNIPVVLSEFDNLIIKEKLEEDDKFEDFINPDTLAET-DV 464 (523)
T ss_pred EEE-ecCceEEe---e--CC-CCcccccEEEEcCCC---CCccceEEEecccccCCCCCCcccChhhhcCCCceEEE-eE
Confidence 998 77777654 1 12 336788899999852 35789999999999999999988999999999999998 69
Q ss_pred eeccccccCCCCCeEEEEEeeeEEEec-CCCCCC-eeEeeecCCCCCC
Q 003751 748 YAEPSLHSAAVGDRFQFERLGYFAVDK-DSTPEK-LVFNRTVTLKDSF 793 (798)
Q Consensus 748 ~~e~~~~~~~~~~~~QfeR~Gyf~~D~-~s~~~~-~v~n~~v~lk~~~ 793 (798)
++|+++.++++|++|||||.|||+||+ ++++++ +||+.|+..|...
T Consensus 465 ~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~~~~~~~ipdg~~k~ 512 (523)
T PLN03233 465 IGDAGLKTLKEHDIIQLERRGFYRVDRPYMGEEKPLILFMIPDGKKKA 512 (523)
T ss_pred EEchhHhhCCCCCeEEEEEeeEEEEccCCCCCCceEEEEECCCCCccc
Confidence 999999999999999999999999997 455555 5999999977654
No 8
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6e-134 Score=1145.65 Aligned_cols=505 Identities=33% Similarity=0.506 Sum_probs=477.4
Q ss_pred hcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCc-ccCCch
Q 003751 271 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSD 349 (798)
Q Consensus 271 ~~~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~-i~yqSd 349 (798)
+++|+|+|||||||||||||||||||++||++||++||+|+||||||||+|+.++|+++|+++|+|||+.||+ ++|||+
T Consensus 48 a~~~~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDTDp~R~~~e~~d~IleDL~WLGl~wDe~~~~QSd 127 (601)
T PTZ00402 48 AEEGKVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDLATLGVSWDVGPTYSSD 127 (601)
T ss_pred CCCCeeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCcccCHHHHHHHHHHHHHCCCCCCCceeeccc
Confidence 4578899999999999999999999999999999999999999999999999999999999999999999997 899999
Q ss_pred hHHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCCc
Q 003751 350 YFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNM 429 (798)
Q Consensus 350 ~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~ 429 (798)
||+.||++|++||++|+||+|+||+++|++.|..+++++||+++++|++.+|+.|++|.+.+|.+++|+|+++.+++.+|
T Consensus 128 r~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~n~~~ 207 (601)
T PTZ00402 128 YMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAM 207 (601)
T ss_pred cHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEecccCCCCCCc
Confidence 99999999999999999999999999999988888999999999999999999999998888899999999999999999
Q ss_pred CccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCCceeeeeeecCCCe
Q 003751 430 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNT 509 (798)
Q Consensus 430 ~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~w~f~~Ln~~g~ 509 (798)
+|+|+||+...+||++|++||||||||||||||||+|||||||||.||++||++|.||+++|||+.|.||||++||.+|+
T Consensus 208 rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg~~~P~~~h~~rLn~~g~ 287 (601)
T PTZ00402 208 RDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRKPIVEDFSRLNMEYS 287 (601)
T ss_pred cCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhCCCCceEEEEeeEcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhhhccCCcceeEe
Q 003751 510 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVL 589 (798)
Q Consensus 510 KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~ 589 (798)
|||||++..+|++|+|.||||||++||++||||||+|+||++||..+|+|++++.+++..|++++|+++++.+||+|+|+
T Consensus 288 kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~~L~~~nr~~l~~~a~R~maV~ 367 (601)
T PTZ00402 288 VMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLWYFNTQILDPSVPRYTVVS 367 (601)
T ss_pred cccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhhcCCceEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEeCCCCceeeeccccCCCCCCCCCCceeEeccccceeeecccccccCCccccCcCCCCEEEEeeeeeEEEEEe
Q 003751 590 NPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEV 669 (798)
Q Consensus 590 dp~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~ 669 (798)
||+||+|+|.+++..+.+++|+||+ +|++|+|+++|+++||||++||+ +|+||++|+|+..+|+.|+++
T Consensus 368 ~p~kv~i~~~~~~~~~~~~~p~hP~---~~~~G~r~i~~~~~iyIe~~D~~--------~l~~g~~vrL~~~gn~~i~~~ 436 (601)
T PTZ00402 368 NTLKVRCTVEGQIHLEACEKLLHKK---VPDMGEKTYYKSDVIFLDAEDVA--------LLKEGDEVTLMDWGNAYIKNI 436 (601)
T ss_pred CCCEEEEEECCCCcceEeeccCCCC---CcccCceEEEECCeEEEEhhhHh--------hcCCCCEEEEeccCCEEEEEE
Confidence 9999999999877666778899888 79999999999999999999987 599999998886678888887
Q ss_pred eecCCCCCEEEEEEEEcCC-CCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCceeeccee
Q 003751 670 ILSDDKETILHIRAEYDPS-KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAY 748 (798)
Q Consensus 670 ~~~~~~g~v~e~~~~~~~~-~~~K~k~~I~WV~~~~~~~~~v~~evr~y~~Lf~~~~p~~~~~~~~~iN~~S~~~~~~a~ 748 (798)
..++++|+|++++|++++. ..+|+|++|||||+. .+.+++++|+|++||++++|++.++|++.+||+|+.+. .|+
T Consensus 437 ~~~~~~g~v~~~~~~~~~~~~~kk~k~~IhWv~~~---~~~~~~~~r~yd~Lf~~~~p~~~~~~~~~ln~~s~~~~-~~~ 512 (601)
T PTZ00402 437 RRSGEDALITDADIVLHLEGDVKKTKFKLTWVPES---PKAEVMELNEYDHLLTKKKPDPEESIDDIIAPVTKYTQ-EVY 512 (601)
T ss_pred EeeCCCCcEEEEEEEECCCCCCCcCCCeEEEecCC---CCcceEEEEecccccCCCCCCccccHHHhcCCCChheE-EEE
Confidence 6456789999999999875 447899999999973 35788999999999999999987899999999999985 799
Q ss_pred eccccccCCCCCeEEEEEeeeEEEecCCCCCCeeEeeecCCCCC
Q 003751 749 AEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDS 792 (798)
Q Consensus 749 ~e~~~~~~~~~~~~QfeR~Gyf~~D~~s~~~~~v~n~~v~lk~~ 792 (798)
+||++.++++|++|||||+|||+||+++++ .||..|++.|..
T Consensus 513 ~E~~~~~~~~~~~~QfeR~Gyf~~D~~~~~--~vl~~ipdg~~~ 554 (601)
T PTZ00402 513 GEEALSVLKKGDIIQLERRGYYIVDDVTPK--KVLIAIPDGREK 554 (601)
T ss_pred EchhHhhCCCCCEEeEEEeEEEEEecCCCC--eEEEECCCCccc
Confidence 999999999999999999999999986533 389999988765
No 9
>PLN02907 glutamate-tRNA ligase
Probab=100.00 E-value=4.2e-130 Score=1149.63 Aligned_cols=502 Identities=31% Similarity=0.532 Sum_probs=476.4
Q ss_pred cCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCcccCCchhH
Q 003751 272 TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYF 351 (798)
Q Consensus 272 ~~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~i~yqSd~~ 351 (798)
.+|+|+|||||||||||||||||+|++||++||++||+|+||||||||+|+.++|+++|+++|+|||++||+++|||+||
T Consensus 210 ~~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDTdp~r~~~e~~~~I~~dl~wLG~~~d~~~~qS~r~ 289 (722)
T PLN02907 210 EEGKVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKDIETLGIKYDAVTYTSDYF 289 (722)
T ss_pred CCCceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCcCChHHHHHHHHHHHHcCCCCCCcccccccH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCCcCc
Q 003751 352 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 431 (798)
Q Consensus 352 ~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D 431 (798)
+.||++|++||++|+||+|+|+++++++.|..+|+|+||+++++|++++|++|++|.+.+++++||+|+|+.++|.+|+|
T Consensus 290 ~~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n~~~~D 369 (722)
T PLN02907 290 PQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRD 369 (722)
T ss_pred HHHHHHHHHHHHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCCCCccc
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCCceeeeeeecCCCeee
Q 003751 432 LIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVM 511 (798)
Q Consensus 432 ~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~w~f~~Ln~~g~KL 511 (798)
+|+||+...+||++||+|++|||||||||||||+|||||||||.||++||++|.||+++||++.|.+|+|+|||++|+||
T Consensus 370 ~v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg~~~p~~~~f~~l~~~~~~l 449 (722)
T PLN02907 370 PVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGLRKVHIWEFSRLNFVYTLL 449 (722)
T ss_pred CEEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcCCCCCeeEEEEEEcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhhhccCCcceeEecc
Q 003751 512 SKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNP 591 (798)
Q Consensus 512 SKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~dp 591 (798)
|||++.++|++|+|.||||||++|+++||||||+|+||++||..+|+|++++.++|+.|++++|+++++.+||.|+|+||
T Consensus 450 SKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~l~~~nr~~id~~a~R~~~v~~p 529 (722)
T PLN02907 450 SKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVLKE 529 (722)
T ss_pred cccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHHHHHHHHHHhccCCCceeEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --eeEEEEeCCCCceeeeccccCCCCCCCCCCceeEeccccceeeecccccccCCccccCcCCCCEEEEeeeeeEEEEEe
Q 003751 592 --LKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEV 669 (798)
Q Consensus 592 --~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~ 669 (798)
++|+|+|+|+. ...+.+|+||+ +|++|+|+++|++.||||++||+. |+||++|+|++.+|+.|+++
T Consensus 530 ~~v~~~i~~~~~~-~~~~~~p~hp~---~~~~g~r~~~~~~~i~i~~~D~~~--------l~~g~~v~L~~~~~~~i~~~ 597 (722)
T PLN02907 530 GRVLLTLTDGPET-PFVRIIPRHKK---YEGAGKKATTFTNRIWLDYADAEA--------ISEGEEVTLMDWGNAIIKEI 597 (722)
T ss_pred CEEEEEEcCCCCC-ceeeeccCCCC---CCccceEEEEECCcEEEEcchHhh--------cCCCCEEEEcccCCEEEEEE
Confidence 77889998764 35678888887 799999999999999999999975 89999998887789999999
Q ss_pred eecCCCCCEEEEEEEEcCC-CCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCceeeccee
Q 003751 670 ILSDDKETILHIRAEYDPS-KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAY 748 (798)
Q Consensus 670 ~~~~~~g~v~e~~~~~~~~-~~~K~k~~I~WV~~~~~~~~~v~~evr~y~~Lf~~~~p~~~~~~~~~iN~~S~~~~~~a~ 748 (798)
+ +|++|+|++++|+|++. ..+|+|++|||||+. ...++|++|+|++||++++|++.++|+++|||+|+.+. .|+
T Consensus 598 ~-~~~~g~v~~~~~~~~~~~~~~k~k~~i~Wv~~~---~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~n~~s~~~~-~~~ 672 (722)
T PLN02907 598 T-KDEGGAVTALSGELHLEGSVKTTKLKLTWLPDT---NELVPLSLVEFDYLITKKKLEEDDNFLDVLNPCTKKET-AAL 672 (722)
T ss_pred E-ECCCCcEEEEEEEEccccCCCcCCCeEEEecCC---CCceEEEEEccccccccCCCccccchhHhcCCCceeEE-EEE
Confidence 8 88999999999999876 457899999999972 25899999999999999999988999999999999998 699
Q ss_pred eccccccCCCCCeEEEEEeeeEEEecC-CCCCC-eeEeeecCCC
Q 003751 749 AEPSLHSAAVGDRFQFERLGYFAVDKD-STPEK-LVFNRTVTLK 790 (798)
Q Consensus 749 ~e~~~~~~~~~~~~QfeR~Gyf~~D~~-s~~~~-~v~n~~v~lk 790 (798)
+||++.++++|++|||||+|||+||+. +++++ +||-.|++-|
T Consensus 673 ~e~~~~~~~~~~~~QfeR~Gy~~~D~~~~~~~~~~~~~~ip~~~ 716 (722)
T PLN02907 673 GDSNMRNLKRGEIIQLERKGYYRCDAPFVRSSKPIVLFAIPDGR 716 (722)
T ss_pred EcHhHhhCCCCCeEEEEEeEEEEECcCCCCCCceEEEEECCCCC
Confidence 999999999999999999999999974 44444 5887787754
No 10
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.4e-118 Score=1018.50 Aligned_cols=453 Identities=32% Similarity=0.527 Sum_probs=427.8
Q ss_pred cCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCc--ccchHHHHHHHHHHHHHcCCCCCcccCCch
Q 003751 272 TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP--EAEKKEYIDHIEEIVQWMGWEPFKITYTSD 349 (798)
Q Consensus 272 ~~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp--~Re~~e~~~~I~edL~wLGl~pd~i~yqSd 349 (798)
.+|+|+|||||||||||||||||+|++||++||+|||+|+|||||||| +|+.++|+++|+++|+|||+.||+++|||+
T Consensus 98 e~g~V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~~R~~~e~~~~I~edL~wLGl~wD~~~~qSd 177 (567)
T PRK04156 98 EKGKVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILEDLKWLGVKWDEVVIQSD 177 (567)
T ss_pred CCCeEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCcccchHHHHHHHHHHHHHcCCCCCCccCccc
Confidence 368899999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCCc
Q 003751 350 YFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNM 429 (798)
Q Consensus 350 ~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~ 429 (798)
||+.||++|++||++|+||+|+||++++++.|..+++|+||++++++++.+|++|.+|.+.+|+++||+|+++.+++++|
T Consensus 178 r~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~~~ 257 (567)
T PRK04156 178 RLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSV 257 (567)
T ss_pred CHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCCCc
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCCceeeeeeecCCCe
Q 003751 430 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNT 509 (798)
Q Consensus 430 ~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~w~f~~Ln~~g~ 509 (798)
+|+|+||+...+||++|++|++|||||||||||||+|||||||||.||++||++|.||+++|||+.|.|+||++|+.+|+
T Consensus 258 rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg~~~P~~~H~~~L~~~g~ 337 (567)
T PRK04156 258 RDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLKIEGF 337 (567)
T ss_pred cccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcCCCCceEEEcceecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhhhccCCcceeEe
Q 003751 510 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVL 589 (798)
Q Consensus 510 KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~ 589 (798)
|||||++.++|++|.|+||||||++||++||++||+|+||++||+.+||+.++..++++.|++++|+.+++.++|+|+|.
T Consensus 338 kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~~~L~~~nr~~ld~~a~R~~~V~ 417 (567)
T PRK04156 338 VLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYAINRKLIDPIANRYFFVR 417 (567)
T ss_pred eeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhccCCceEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEeCCCCceeeeccccCCCCCCCCCCceeEeccccceeeecccccccCCccccCcCCCCEEEEeeeeeEEEEEe
Q 003751 590 NPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEV 669 (798)
Q Consensus 590 dp~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~ 669 (798)
||+||+|+|.+. ..+++|+||+ +|++|+|.++|++.||||++||++. |+.|+|+++|||+|+++
T Consensus 418 ~pv~v~i~~~~~---~~~~~p~hP~---~~~~G~r~v~~~~~i~i~~~D~~~~----------g~~vrL~~~~nv~~~~~ 481 (567)
T PRK04156 418 DPVELEIEGAEP---LEAKIPLHPD---RPERGEREIPVGGKVYVSSDDLEAE----------GKMVRLMDLFNVEITGV 481 (567)
T ss_pred CceEEEEcCCCc---eEEEcCCCCC---CCCCceEEEEECCeEEEEHHHHhhc----------CCEEEeeeEEEEEEEEE
Confidence 999999999643 4678899988 7999999999999999999999862 99999999999999986
Q ss_pred eecCCCCCEEEEEEEEcCC---CCCCCC-eeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCceeec
Q 003751 670 ILSDDKETILHIRAEYDPS---KKTKPK-GVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIP 745 (798)
Q Consensus 670 ~~~~~~g~v~e~~~~~~~~---~~~K~k-~~I~WV~~~~~~~~~v~~evr~y~~Lf~~~~p~~~~~~~~~iN~~S~~~~~ 745 (798)
. +++|+|+++ ..+|+| ++|||||+ .++++|+||.+ +. .+ .
T Consensus 482 ~---------~~~~~~~~~~~~~~~k~~~~~i~Wv~~----~~~v~~~v~~~---------~~-------------~~-~ 525 (567)
T PRK04156 482 S---------VDKARYHSDDLEEARKNKAPIIQWVPE----DESVPVRVLKP---------DG-------------GD-I 525 (567)
T ss_pred E---------EEEEEEcCCccccccccCCCEEEEccC----CCCeeEEEECC---------Cc-------------eE-E
Confidence 4 478888765 346777 59999997 46899999862 11 23 3
Q ss_pred ceeeccccccCCCCCeEEEEEeeeEEEecCC
Q 003751 746 EAYAEPSLHSAAVGDRFQFERLGYFAVDKDS 776 (798)
Q Consensus 746 ~a~~e~~~~~~~~~~~~QfeR~Gyf~~D~~s 776 (798)
.|++|+++.++++|++|||||+|||+||+..
T Consensus 526 ~g~~E~~~~~~~~~~~~QfeR~Gf~~~D~~~ 556 (567)
T PRK04156 526 EGLAEPDVADLEVDDIVQFERFGFVRIDSVE 556 (567)
T ss_pred EEEEchhHhhCCCCCEEEEEEeEEEEEecCC
Confidence 6999999999999999999999999999864
No 11
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=100.00 E-value=1.5e-117 Score=1012.07 Aligned_cols=465 Identities=30% Similarity=0.511 Sum_probs=428.1
Q ss_pred cCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCcccCCchhH
Q 003751 272 TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYF 351 (798)
Q Consensus 272 ~~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~i~yqSd~~ 351 (798)
..|+|+|||||||||||||||||+|++||++|++|||+|+||||||||+|+.++|+++|+++|+|||+.||+++|||+||
T Consensus 90 ~~~~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDTDp~R~~~e~~~~I~edL~wLGi~~d~~~~qSd~~ 169 (560)
T TIGR00463 90 KMGEVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDTDPRRVKPEAYDMILEDLDWLGVKGDEVVYQSDRI 169 (560)
T ss_pred cCCeeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcCCcccccHHHHHHHHHHHHHcCCCCCccccccccH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCCcCc
Q 003751 352 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 431 (798)
Q Consensus 352 ~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D 431 (798)
+.||++|++||++|+||+|+||+++|++.|+.+|+|+||+++++|++++|++|++|.+.+|++|||+|+|+.++|++|+|
T Consensus 170 ~~y~~~a~~Li~~G~AY~C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~lR~K~d~~~~n~~~rD 249 (560)
T TIGR00463 170 EEYYDYCRKLIEMGKAYVCDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEGGKVVVRAKTDYKHKNPAIRD 249 (560)
T ss_pred HHHHHHHHHHHHcCCceeecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEECCCcCCCccccC
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCCceeeeeeecCCC-ee
Q 003751 432 LIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSN-TV 510 (798)
Q Consensus 432 ~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~w~f~~Ln~~g-~K 510 (798)
+|+||+...+||++||+|++|||||||||||||+|||||||||.||++||++|.+++.+|||..|.|+||+++..++ .+
T Consensus 250 ~V~~R~~~~~h~~~Gd~~~~~PtYdfA~~VDD~l~gITHviRg~E~~~nT~rq~yl~~~lg~~~P~~~h~~~l~~~~~~k 329 (560)
T TIGR00463 250 WVIFRINKTPHPRTGDKYKVYPTMDFSVPIDDHLLGVTHVLRGKDHIDNERKQQYIYMYFGWELPEFIHWGRLKINDVRT 329 (560)
T ss_pred cEEEEecCCCccccCCEEEEEeccccceEeecccCCCCeEEechhhhcCCHHHHHHHHHcCCCCCeEEEEcceecCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976554 58
Q ss_pred eeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhhhccCCcceeEec
Q 003751 511 MSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLN 590 (798)
Q Consensus 511 LSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~d 590 (798)
||||.....+.+|.|.||||||++||++||+||++|+||++||..+|||+++++++|+.|++++|+.+++.+||+|+|.|
T Consensus 330 Lskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nr~~id~~a~R~~~V~~ 409 (560)
T TIGR00463 330 LSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRNDVNLSWKNIYAFNKKIIDPIARRYFFIWN 409 (560)
T ss_pred ecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCceeeHHHHHHHHHHHhCcCCCceEEEcC
Confidence 88877666666799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEeCCCCceeeeccccCCCCCCCCCCceeEeccccceeeecccccccCCccccCcCCCCEEEEeeeeeEEEEEee
Q 003751 591 PLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVI 670 (798)
Q Consensus 591 p~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~~ 670 (798)
|++|+|+|+|+. ...++|+||+ +|++|+|.|+|++.||||++||++ +||++|+|++.|||+|+++.
T Consensus 410 p~~v~i~~~~~~--~~~~~p~hp~---~~~~G~r~v~~~~~i~i~~~D~~~---------~~g~~vrL~~~~ni~~~~~~ 475 (560)
T TIGR00463 410 PVKIEIEGAPEP--KIVERPLHPD---NPEVGERKLIYYGEIYVDKDDLEV---------IEGEEVRLMDWGNVIITKKN 475 (560)
T ss_pred CcEEEEecCCCC--eeEEccCCCC---CCCCceEEEEECCeEEEEHHHHhh---------CCCCEEEEeecccEEEEEEe
Confidence 999999998753 3457888887 799999999999999999999974 69999988888999999986
Q ss_pred ecCCCCCEEEEEEEEcCC-CCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCceeecceee
Q 003751 671 LSDDKETILHIRAEYDPS-KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYA 749 (798)
Q Consensus 671 ~~~~~g~v~e~~~~~~~~-~~~K~k~~I~WV~~~~~~~~~v~~evr~y~~Lf~~~~p~~~~~~~~~iN~~S~~~~~~a~~ 749 (798)
++ |.+ .+.++.+ ..+|++++|||||+ .+.++|+++.|++|++ .|++
T Consensus 476 -~~--~~~---~~~~~~~~~~~~~~~~i~Wv~~----~~~v~~~~~~~d~l~~-----------------------~~~~ 522 (560)
T TIGR00463 476 -DD--GSM---YHSLNLEGARKKGKHIIHWLPD----KDAVKVKVIMPDHLIT-----------------------EGRL 522 (560)
T ss_pred -CC--CcE---EeccccccccccCCCEEEECcC----CCceEEEEEcCccccc-----------------------cCcc
Confidence 43 432 2334433 34678899999997 4689999999988742 3788
Q ss_pred ccccccCCCCCeEEEEEeeeEEEecCCCC-CCeeE
Q 003751 750 EPSLHSAAVGDRFQFERLGYFAVDKDSTP-EKLVF 783 (798)
Q Consensus 750 e~~~~~~~~~~~~QfeR~Gyf~~D~~s~~-~~~v~ 783 (798)
|+++...++|++|||||+|||+||+...+ ...||
T Consensus 523 E~~~~~~~~~~~vQfeR~Gy~~~D~~~~~~~~~~f 557 (560)
T TIGR00463 523 EEDASFEEVGDIIQFERFGFYRLDSADKDGKVYVY 557 (560)
T ss_pred CcchhhcCCCCEEEEEEeEEEEEccCCCCCceEEE
Confidence 89888889999999999999999987644 34666
No 12
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-116 Score=962.22 Aligned_cols=503 Identities=35% Similarity=0.598 Sum_probs=471.7
Q ss_pred hcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCcccCCchh
Q 003751 271 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDY 350 (798)
Q Consensus 271 ~~~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~i~yqSd~ 350 (798)
+..|+|+|||||+|+||||||||+|||+|+.||.+++|+.|+|||||||++|.++|++.|++||..|||+||.++|+|||
T Consensus 196 ae~GkVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRFDDTNPaKE~~eFe~~IleDl~~LgIkpd~~TyTSDy 275 (712)
T KOG1147|consen 196 AEMGKVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDDTNPAKENEEFEDVILEDLSLLGIKPDRVTYTSDY 275 (712)
T ss_pred cccCceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEEecCCCcchhhHHHHHHHHHHHHHhCcCcceeeechhh
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCCcC
Q 003751 351 FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMY 430 (798)
Q Consensus 351 ~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~ 430 (798)
|+.+++++++||+.|+||++....|+|+..|+.+.+|.||++++||||++|++|..|....-.+|+|+|+||+++|.+|+
T Consensus 276 F~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~~~vEenl~iw~EM~kGs~~Gl~~CvRaKIdm~s~NkaMR 355 (712)
T KOG1147|consen 276 FDEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCRSNSVEENLRIWEEMKKGSEKGLKCCVRAKIDMSSPNKAMR 355 (712)
T ss_pred HHHHHHHHHHHHhcCcccccCCcHHHHHHHHhccccccccCCCHHHHHHHHHHHhccchhhhhhheeeeecccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999986555799999999999999999
Q ss_pred ccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCCceeeeeeecCCCee
Q 003751 431 DLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTV 510 (798)
Q Consensus 431 D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~w~f~~Ln~~g~K 510 (798)
|+|+||+...||||+|++|.+||||||||+|.|+++||||.+|+.|++++.++|+|++++||+.+|.+|+|+|||+.+|+
T Consensus 356 DPviYRcn~~pHhRTG~KYkvYPTYDFaCPIVDslEGVThaLRttEYhDRn~Qyyw~i~al~LRkp~iwefsRlN~~nTv 435 (712)
T KOG1147|consen 356 DPVIYRCNPEPHHRTGDKYKVYPTYDFACPIVDSLEGVTHALRTTEYHDRNAQYYWFIDALGLRKPHIWEFSRLNFVNTV 435 (712)
T ss_pred CCeeEecCCCCCCcCCCceeeecccccccccchhhhhhhhhhhhhhccccchHHHHHHHHhcCCccceeehhhhhhHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhhhccCCcceeEec
Q 003751 511 MSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLN 590 (798)
Q Consensus 511 LSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~d 590 (798)
||||++.++|++|+|+||||||++|+++.+|||++.|++++|++.+|.|++..+++|+.+|+++++.+++.+||+.||..
T Consensus 436 LSKRKLtwfVd~GlV~GWDDPRfpTVrGv~RrGmtvEgLkqfIl~QG~Sk~v~~meWdkiWAfNKKvIDPVapRytav~~ 515 (712)
T KOG1147|consen 436 LSKRKLTWFVDEGLVDGWDDPRFPTVRGVRRRGMTVEGLKQFILAQGPSKNVVTMEWDKIWAFNKKVIDPVAPRYTAVVK 515 (712)
T ss_pred hhhhheeeeeccCcccCCCCCCcchhHHHHHcCccHHHHHHHHHHhCCccceeeeehHhhhhhcccccCCCCccceeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ceeE--EEEeCCCCceeeeccccCCCCCCCCCCceeEeccccceeeecccccccCCccccCcCCCCEE-EEeeeeeEEEE
Q 003751 591 PLKV--VITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSV-LLRYAFPIKCT 667 (798)
Q Consensus 591 p~kl--~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~~v-~l~~~~~i~~~ 667 (798)
+..| .+.|.|.++..+ .. |.|+|||+.|.+.+.|++.||||+.|++. |..|+.| +|.| ||+.++
T Consensus 516 ~~~V~v~i~~~~~~~~~~-~~---PkHkKn~~lG~K~v~~~~~I~le~~Da~~--------l~~gEevTlmnW-GN~~i~ 582 (712)
T KOG1147|consen 516 EDRVEVTITNGPQEEYIE-VS---PKHKKNPELGEKKVIYSKKILLEQADAEA--------LKEGEEVTLMNW-GNAIIK 582 (712)
T ss_pred CceEEEecCCCCCcchhh-cc---ccCCCCcccCccceeeccceeEeccchhh--------hcCCcEEEEEec-cceeeE
Confidence 6554 455655443322 23 44555999999999999999999999987 8999999 9999 799999
Q ss_pred EeeecCCCCCEEEEEEEEcCC-CCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCceeecc
Q 003751 668 EVILSDDKETILHIRAEYDPS-KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPE 746 (798)
Q Consensus 668 ~~~~~~~~g~v~e~~~~~~~~-~~~K~k~~I~WV~~~~~~~~~v~~evr~y~~Lf~~~~p~~~~~~~~~iN~~S~~~~~~ 746 (798)
++. +|++|+||.+.++++++ ..||+|.+++|++.. .+++++.+..|++|++++..+++++|.+.+||||.... -
T Consensus 583 ki~-kd~sg~vtsl~a~LnldgDfKkTk~KlTWLadt---~~~vpv~lv~fd~lItK~~le~dEd~k~f~n~~t~~~~-~ 657 (712)
T KOG1147|consen 583 KIN-KDASGKVTSLSAKLNLDGDFKKTKLKLTWLADT---NDSVPVDLVDFDHLITKDKLEKDEDFKDFVNPNTVKET-L 657 (712)
T ss_pred Eee-ccCCceEEEEEEEeccCCccccccceeEEeccC---CCccceEEeechhhcchhhcccchhHHHhcCCCccccc-h
Confidence 998 99999999999999877 447889999999984 57899999999999999999999999999999999876 6
Q ss_pred eeeccccccCCCCCeEEEEEeeeEEEecC-C-CCCCeeEeeecCCCC
Q 003751 747 AYAEPSLHSAAVGDRFQFERLGYFAVDKD-S-TPEKLVFNRTVTLKD 791 (798)
Q Consensus 747 a~~e~~~~~~~~~~~~QfeR~Gyf~~D~~-s-~~~~~v~n~~v~lk~ 791 (798)
+++|++++++++||+|||||.|||+||.. + .+..+||+.|+.-|.
T Consensus 658 ~~gd~~ikn~KkGDIIQ~eRkGfy~~D~p~~~~~~p~Vlf~IPdg~t 704 (712)
T KOG1147|consen 658 MLGDPAIKNLKKGDIIQLERKGFYICDVPLPKDGKPLVLFSIPDGKT 704 (712)
T ss_pred hccChhhhccccCceEEEeccceEEeccccCCCCCcEEEEECCCCCc
Confidence 99999999999999999999999999963 3 345799999998876
No 13
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-90 Score=776.06 Aligned_cols=448 Identities=33% Similarity=0.483 Sum_probs=376.7
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCc-ccCCchhHHHH
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQEL 354 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~-i~yqSd~~~~~ 354 (798)
|+|||||||||+||||||||||+||+|||+|||+|+||||||||+|+.++|+++|+++|+|||++||+ ++|||+||+.|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDTD~~R~~~e~~~~I~~~L~WLGl~wde~~~~QS~r~~~Y 89 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLEWLGLDWDEGPYYQSERFDIY 89 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHHhcCCCCCCceeehhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHcCCccccCCCHHHHHHHhc----cC-CC-CCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCC
Q 003751 355 YELAVELIRRGHAYVDHQTPEEIKEYRE----KK-MN-SPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFN 428 (798)
Q Consensus 355 ye~a~~LI~~G~AY~C~cs~eel~~~r~----~~-y~-~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~ 428 (798)
|++|++||++|+||+|+||++||++.|. .+ -| +++|+ +++|..|+.|..... ++++|||+|+|+.++++.
T Consensus 90 ~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~---~~~L~~~~~~~~~~~-~~~~viR~k~~~~~~~~~ 165 (472)
T COG0008 90 YEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRD---ERNLTLFEKMADLGE-GGPAVVRLKIPMAHPGPV 165 (472)
T ss_pred HHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCch---hhccchHHHHhhccc-CCCeEEEEeCCCCCCCCc
Confidence 9999999999999999999988777764 11 12 44443 566777888876222 678999999998767779
Q ss_pred cCccEEEEEecCC-CCC-CCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCCceeeeeee-c
Q 003751 429 MYDLIAYRIKFTP-HPH-AGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-N 505 (798)
Q Consensus 429 ~~D~V~~Ri~~~~-h~~-~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~w~f~~L-n 505 (798)
|+|+|.||+.+.+ |+. .+.+|+||||||||||||||+|||||||||.||++||++|.|||++|||+.|.|+||+++ +
T Consensus 166 ~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~ 245 (472)
T COG0008 166 FRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLN 245 (472)
T ss_pred cccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeeec
Confidence 9999999999988 888 899999999999999999999999999999999999999999999999999999999986 5
Q ss_pred CCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhhhccCCcc
Q 003751 506 VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRT 585 (798)
Q Consensus 506 ~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~ 585 (798)
.+|+|||||++...+....+.||++||+.|+.+++++|++|+++..|+...|++..+....+..++.++++.++...+|+
T Consensus 246 ~~g~kLSKr~~~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~fd~~~~~~~~~~fd~~kL~~~n~ry 325 (472)
T COG0008 246 EDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPAAFDRKKLDWLNPRY 325 (472)
T ss_pred CCCCeecCccCccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhhhhhhhhcccccccHHHhHhhhHHH
Confidence 67779999999777777789999999999999999999999999999999999888888888889999999999999999
Q ss_pred eeEecceeEEEEeCCC-CceeeeccccCCCCCCCCCCceeEecccc--ceeeecccccccCCccccCcCCCCEEEEeeee
Q 003751 586 MVVLNPLKVVITNMES-GTIMHLDAKRWPDAQADDASAFYKVPFSN--VVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAF 662 (798)
Q Consensus 586 ~av~dp~kl~i~N~~~-~~~~~~~~p~~p~~~~~~~~g~~~v~~~~--~iyIe~~D~~~~~~~~~~~l~~g~~v~l~~~~ 662 (798)
|.+ +|.++.+.+++. ........|. ++++|.+.+++.+ .++|++.|+.. +.+++.++++...
T Consensus 326 ~~~-~p~e~~~~~l~~~~~~~~~~~~~------~~e~~~~~~~l~~~~~~~i~~~~~~~--------~~~~~~~~~~~l~ 390 (472)
T COG0008 326 MRV-DPVEVVIENLKPHLEEEGATLPL------NPEMGERVVPLTKETLIEIERLDFFF--------FEDKEEVRLKRLA 390 (472)
T ss_pred HHh-CCHHHHHHhhhhhhhhhcccCCC------CHHHHhhhhhhccchHHHHhHHHHHH--------hcchHHHHHHhhc
Confidence 999 999999998764 1112333333 4789999999999 99999999865 3344666665544
Q ss_pred eEEEEEeeecCCCCCEEEEEEEEcCCCCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCce
Q 003751 663 PIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKV 742 (798)
Q Consensus 663 ~i~~~~~~~~~~~g~v~e~~~~~~~~~~~K~k~~I~WV~~~~~~~~~v~~evr~y~~Lf~~~~p~~~~~~~~~iN~~S~~ 742 (798)
++...++......+.... ...+..++|||++. . .+|..+.| ++++.+..
T Consensus 391 ~~~~~~~l~~~~~~l~~~---------~~~~~~i~~wv~~~-----~---------~~~~vk~~--------~~~~plr~ 439 (472)
T COG0008 391 NVIVAEVLEKDAEGLITS---------DWTKENIIHWVKAV-----A---------RLFGVKGP--------KLFPPLRV 439 (472)
T ss_pred chHHHHHHHHHHHhhhhc---------cccHHHHHHHHHHH-----H---------HHhCCCCc--------ccchhhHH
Confidence 443333221222222211 12344599999862 1 46666666 47888998
Q ss_pred eecceeeccccccCCCC--CeEEEEEeeeEEEe
Q 003751 743 VIPEAYAEPSLHSAAVG--DRFQFERLGYFAVD 773 (798)
Q Consensus 743 ~~~~a~~e~~~~~~~~~--~~~QfeR~Gyf~~D 773 (798)
+.++++++|.+.+.... ..+||+|+|||++|
T Consensus 440 a~tG~~~~p~l~~~~~~~g~~~q~~Rl~~~~~~ 472 (472)
T COG0008 440 ALTGGYVEPELADTIELLGKEVQFERLGYALAD 472 (472)
T ss_pred HhcCCccCCCHHHHHHhhchHHHHHHHHHHhhC
Confidence 88889999998765544 45999999999875
No 14
>PLN02627 glutamyl-tRNA synthetase
Probab=100.00 E-value=5.3e-74 Score=649.27 Aligned_cols=321 Identities=22% Similarity=0.332 Sum_probs=279.0
Q ss_pred HHHhhhhcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCc-
Q 003751 265 LDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK- 343 (798)
Q Consensus 265 ~~~hl~~~~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~- 343 (798)
+..|.+.+.|+|||||||||||+|||||||+||+||+|||++||+|||||||||++|+.+++++.|+++|+||||+||+
T Consensus 35 ~~~~~~~~~~~vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~I~~~L~WLGl~wDeg 114 (535)
T PLN02627 35 AAAAGESKGGPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLDWDEG 114 (535)
T ss_pred ecccccCCCCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCcC
Confidence 3445566778899999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred --------ccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhc--------cCCCCCCCCCChHHHHHHHHHhhcC
Q 003751 344 --------ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNG 407 (798)
Q Consensus 344 --------i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~--------~~y~~~~R~~s~ee~l~~f~~m~~G 407 (798)
+|+||+|++.|+++|++|+++|+||+|+||++++++.|+ +.|+++||+++.+++.+.+. .|
T Consensus 115 p~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~---~g 191 (535)
T PLN02627 115 PDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAELA---KG 191 (535)
T ss_pred cccCCCCCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHHh---CC
Confidence 489999999999999999999999999999999988764 46999999999998754322 22
Q ss_pred cccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-----cccccccccceeeccCCCcceEecCcccccchh
Q 003751 408 RIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRA 482 (798)
Q Consensus 408 ~~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~-----~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~ 482 (798)
.++++|+|++. .+...+.|.|.+.+.+.... .+ +| +|+||||||||||||+|||||||||+||++||+
T Consensus 192 ----~~~~iR~k~p~-~~~~~~~D~i~G~i~~~~~~-~~-D~Vi~R~DG~PtY~fA~vVDD~~mgITHViRG~D~l~nTp 264 (535)
T PLN02627 192 ----TPYTYRFRVPK-EGSVKIDDLIRGEVSWNTDT-LG-DFVLLRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTL 264 (535)
T ss_pred ----CCceEEEEcCC-CCceEEEeeeeeeeeecccc-CC-CeEEEecCCCccccccceecccccCCcEEEechhhhcChH
Confidence 25799999863 34566788888888765442 23 33 689999999999999999999999999999999
Q ss_pred hHHHHHHHhCCCCCceeeeee-ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCC
Q 003751 483 SYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 561 (798)
Q Consensus 483 ~q~~L~~aLg~~~P~~w~f~~-Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~ 561 (798)
+|.+|+++|||..|.|+|+++ +|.+|+|||||+++ .++..||++||.|+||+||++.|||+..
T Consensus 265 kQi~ly~aLg~~~P~f~Hlpli~~~~g~KLSKR~~~----------------~~v~~~r~~G~~PeAi~nyla~LGws~~ 328 (535)
T PLN02627 265 RQALIYKALGFPMPRFAHVSLILAPDRSKLSKRHGA----------------TSVGQFREMGYLPDAMVNYLALLGWNDG 328 (535)
T ss_pred HHHHHHHHcCCCCCeEEEccceeCCCCCccccccCC----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCC
Confidence 999999999999999889887 58899999999986 5799999999999999999999999976
Q ss_pred CccccHhhHHHHHHHhhhccCCcceeEecceeEEEEe------CCCCceeeeccccC
Q 003751 562 DSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKRW 612 (798)
Q Consensus 562 ~~~~~~~~Le~~ir~~~~~~~~R~~av~dp~kl~i~N------~~~~~~~~~~~p~~ 612 (798)
+. -++..++++++.|....+++.+++||+.||.|.| ++.+++.....|++
T Consensus 329 ~~-~e~~~~~eli~~F~l~~v~~s~~~fD~~KL~wlN~~yir~l~~~el~~~~~p~l 384 (535)
T PLN02627 329 TE-NEIFTLEELVEKFSIDRINKSGAVFDSTKLKWMNGQHLRLLPEEELVKLVGERW 384 (535)
T ss_pred CC-CCcCCHHHHHHhCCHhhCCCcccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 42 2566789999999999999999999999998877 55555544445544
No 15
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.3e-74 Score=637.87 Aligned_cols=289 Identities=21% Similarity=0.283 Sum_probs=264.0
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCcccCCchhHHHHHH
Q 003751 277 LTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYE 356 (798)
Q Consensus 277 ~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~i~yqSd~~~~~ye 356 (798)
+|||||||||+|||||||+||+||++||++||+|+|||||||++|+.+++++.|+++|+|||++||++++||+|++.|++
T Consensus 1 ~~RFAPSPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~~R~~~e~~~~I~~~L~WlGl~wDe~y~QSeR~~~Y~~ 80 (433)
T PRK12410 1 MLRFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFGISWDKLVYQSENLKFHRQ 80 (433)
T ss_pred CCccCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCChHHHHHHHHHHHHcCCCCCCCeehhccHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccccCCCHHHHHHHhc--------cCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCC
Q 003751 357 LAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFN 428 (798)
Q Consensus 357 ~a~~LI~~G~AY~C~cs~eel~~~r~--------~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~ 428 (798)
+|++||++|+||+|+||++++++.|+ ++|++.||+++.+|.+ . ..+++++|||++ .+...
T Consensus 81 ~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~~------~----~g~~~~iR~k~p--~~~~~ 148 (433)
T PRK12410 81 MAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEVL------N----CNKPFVVRLKKP--NHTMS 148 (433)
T ss_pred HHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHHH------h----cCCCeEEEEEcC--CCcee
Confidence 99999999999999999999988764 4799999999988741 1 234799999987 36778
Q ss_pred cCccEEEEEecCCCCCCCCcc-----cccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCC-Cceeeee
Q 003751 429 MYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQ-PYVWEYS 502 (798)
Q Consensus 429 ~~D~V~~Ri~~~~h~~~gd~~-----~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~-P~~w~f~ 502 (798)
+.|.|.|++.+.++. .++| +|+||||||||||||+|||||||||+||++|||+|.+|+++|||.. |.|.|++
T Consensus 149 f~D~v~G~i~~~~~~--~~D~Vi~R~Dg~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~Ly~aLg~~~pp~f~Hlp 226 (433)
T PRK12410 149 FTDAIKGEVSFEPDE--IDSFVILRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNKEITYAHLP 226 (433)
T ss_pred eeeccceeEEecccc--CCCeEEEcCCCCccccccchhchhhcCCCEEEechhhhhCcHHHHHHHHHcCCCCCCeEEEee
Confidence 999999999877543 3466 5799999999999999999999999999999999999999999986 4777887
Q ss_pred -eecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhhhcc
Q 003751 503 -RLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKT 581 (798)
Q Consensus 503 -~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~ 581 (798)
.+|.+|+|||||+++ .+|.+||++||.|+||+||++.+||+... ++..++++++.|....
T Consensus 227 li~~~~g~KLSKR~~~----------------~~v~~~r~~G~~PeAi~n~l~~lG~~~~~---e~~~~~eli~~F~~~~ 287 (433)
T PRK12410 227 IILNEEGKKMSKRDNA----------------SSVKWLLEQGFLPSAIANYLILLGNKTPK---EIFTLEEAIEWFDIEK 287 (433)
T ss_pred eeeCCCCCeeecccCh----------------hhHHHHHHCCCCHHHHHHHHHHhCCCCcc---cccCHHHHHHhCCHhh
Confidence 479999999999986 68999999999999999999999998764 5567889999999999
Q ss_pred CCcceeEecceeEEEEe
Q 003751 582 APRTMVVLNPLKVVITN 598 (798)
Q Consensus 582 ~~R~~av~dp~kl~i~N 598 (798)
+++.+++||+.||.+.|
T Consensus 288 i~~~~~~~d~~kL~~~N 304 (433)
T PRK12410 288 ISKSPAKFDLKKLRFIN 304 (433)
T ss_pred CCCccccCCHHHHHHHH
Confidence 99999999999998877
No 16
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=100.00 E-value=4.8e-74 Score=621.92 Aligned_cols=306 Identities=30% Similarity=0.418 Sum_probs=264.0
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCC-cccCCchhHHH
Q 003751 275 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPF-KITYTSDYFQE 353 (798)
Q Consensus 275 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd-~i~yqSd~~~~ 353 (798)
+|||||||||||+|||||||+||+||++||++||+|+|||||||++|+.++|+++|+++|+|||++|| ++++||+|++.
T Consensus 1 kv~tRFAPsPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~D~~~~~QS~r~~~ 80 (314)
T PF00749_consen 1 KVRTRFAPSPTGYLHIGHARTALLNYLFARKYGGKFILRIEDTDPERCRPEFYDAILEDLRWLGLEWDYGPYYQSDRLEI 80 (314)
T ss_dssp --EEEE---SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETSSTTTCHHHHHHHHHHHHHHHT---STCEEEGGGGHHH
T ss_pred CeeEeeCCCCCCCcccchhHHHHHHHHHHhccCceEEEeccccccccchhhHHHHHHhheeEEEEecCCeEEeHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHHHHHHHHcCCccccCCCHHHHHHHhcc--CCCCCCCCCChHHHHHHH-HHhhcCcccCCceEEEEEecCCCCCCCcC
Q 003751 354 LYELAVELIRRGHAYVDHQTPEEIKEYREK--KMNSPWRDRPIAESLKLF-EDMRNGRIEEGKATLRMKQDMQNDNFNMY 430 (798)
Q Consensus 354 ~ye~a~~LI~~G~AY~C~cs~eel~~~r~~--~y~~~~R~~s~ee~l~~f-~~m~~G~~~~g~~~lR~K~d~~~~~~~~~ 430 (798)
|+++|++|+++|+||+|+||+++|++.|+. +.+++++....+.++.++ ++|+.+....++++||+|+++... ..|+
T Consensus 81 Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~-~~~~ 159 (314)
T PF00749_consen 81 YQEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESP-IAFR 159 (314)
T ss_dssp HHHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCC-EEEE
T ss_pred HHHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccccc-cccc
Confidence 999999999999999999999999999875 566778888888888888 788888888889999999997655 8899
Q ss_pred ccEEEEEecCC---CCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCCceeeee-eecC
Q 003751 431 DLIAYRIKFTP---HPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYS-RLNV 506 (798)
Q Consensus 431 D~V~~Ri~~~~---h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~w~f~-~Ln~ 506 (798)
|+|.|++...+ |+..+.+++|+||||||||||||+|||||||||.||+++|+.|.||+++||++.|.|.|.+ .+|.
T Consensus 160 D~v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~ 239 (314)
T PF00749_consen 160 DLVRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNE 239 (314)
T ss_dssp ETTTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEET
T ss_pred cCcceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecC
Confidence 99999998776 5555567899999999999999999999999999999999999999999999988777754 5899
Q ss_pred CCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhhhccCCcce
Q 003751 507 SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTM 586 (798)
Q Consensus 507 ~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~ 586 (798)
+|+|||||+++.+ ..+..++..|++|+++.+||+.+||+... .-++..++++++.|....+++..
T Consensus 240 ~g~kLSKR~~~~~--------------i~~~~~r~~g~~~~~~l~~L~~lG~~~~~-~~e~~~~~~~~~~f~~~~~~~~~ 304 (314)
T PF00749_consen 240 DGKKLSKRKGAKS--------------IELGDYREWGDPPEATLNYLARLGWSPEA-IREFFSLDELIKQFDLSKISKSP 304 (314)
T ss_dssp TSSBSSTTCSHHB--------------HHHHHHHHTT-THHHHHHHHHHTTB-HCT-HHCHHHHHHHHHHC-GGGBHSSH
T ss_pred CCcEechhhcccc--------------ccccccccCCCCHHHHHHHHHHhcCCcch-hhhhcCHHHHHHHhhHhhccCch
Confidence 9999999999743 24889999999999999999999999654 35677889999999888999999
Q ss_pred eEecceeEEE
Q 003751 587 VVLNPLKVVI 596 (798)
Q Consensus 587 av~dp~kl~i 596 (798)
++||..||.|
T Consensus 305 ~~fd~~kL~w 314 (314)
T PF00749_consen 305 AVFDRKKLDW 314 (314)
T ss_dssp EEHHHHHHHH
T ss_pred HHhCHHHhCC
Confidence 9999988743
No 17
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=1.5e-72 Score=583.56 Aligned_cols=238 Identities=65% Similarity=1.158 Sum_probs=229.8
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCcccCCchhHHHH
Q 003751 275 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQEL 354 (798)
Q Consensus 275 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~i~yqSd~~~~~ 354 (798)
+|+|||||||||+|||||+|+||+||++||++||+|+|||||||++|+.+++++.|+++|+|||++||+++|||+|++.|
T Consensus 1 ~v~~RFAPsPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD~~~~QS~r~~~Y 80 (238)
T cd00807 1 KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYKVTYASDYFDQL 80 (238)
T ss_pred CceEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCcccchHHHHHHHHHHHHcCCCCCCceecccCHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccEE
Q 003751 355 YELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIA 434 (798)
Q Consensus 355 ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~ 434 (798)
++++++|+++|+||+
T Consensus 81 ~~~~~~L~~~g~aY~----------------------------------------------------------------- 95 (238)
T cd00807 81 YEYAEQLIKKGKAYV----------------------------------------------------------------- 95 (238)
T ss_pred HHHHHHHHHcCCeec-----------------------------------------------------------------
Confidence 999999999999997
Q ss_pred EEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCCceeeeeeecCCCeeeecc
Q 003751 435 YRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKR 514 (798)
Q Consensus 435 ~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~w~f~~Ln~~g~KLSKR 514 (798)
|++.|++|+++|||||||||||++|||||||||.||+++|++|.||+++||++.|.+|+|+|+|.+|+|||||
T Consensus 96 -------~~~~~~~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~~~~~~hln~~g~kLSKR 168 (238)
T cd00807 96 -------HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFSRLNLTYTVMSKR 168 (238)
T ss_pred -------CCCCCCCEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHcCCCCCceeEEEEECCCCCCccCc
Confidence 1122346677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhhhccCCc
Q 003751 515 KLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPR 584 (798)
Q Consensus 515 ~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R 584 (798)
+++++|++|.|.||||||++|+.+|+++|++|+||++||+.+|||+++..++++.|++++++.+++.++|
T Consensus 169 ~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr~~id~~~~r 238 (238)
T cd00807 169 KLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVRKDLNPTAPR 238 (238)
T ss_pred CchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987
No 18
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.4e-72 Score=624.72 Aligned_cols=294 Identities=27% Similarity=0.332 Sum_probs=263.3
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCcccCCchhHHHH
Q 003751 275 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQEL 354 (798)
Q Consensus 275 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~i~yqSd~~~~~ 354 (798)
+|||||||||||+||||||||||+||++||++||+|+|||||||++|..+++.+.|+++|+|||+.||+.++||++++.|
T Consensus 2 ~vr~RFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~Rs~~~~~~~I~e~L~wLGI~~De~y~QSer~~~y 81 (445)
T PRK12558 2 TVITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDLKWLGINWDRTFRQSDRFDRY 81 (445)
T ss_pred ceeEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccCCcccchHHHHHHHHHHHHHcCCCCCccccHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCccccCCCHHHHHHHhc--------cCCCCCCCCCChHHHHHHHHHhhcCcccCC-ceEEEEEecCCCC
Q 003751 355 YELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQDMQND 425 (798)
Q Consensus 355 ye~a~~LI~~G~AY~C~cs~eel~~~r~--------~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g-~~~lR~K~d~~~~ 425 (798)
.+++++|+++|+||+|+||++++++.|. +.|++.||+++.++.... ...| ++++|+|++ .+
T Consensus 82 ~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~--------~~~g~~~~iR~k~~--~~ 151 (445)
T PRK12558 82 DEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAAL--------EAEGRKPHWRFKLD--DE 151 (445)
T ss_pred HHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhH--------HhcCCCceEEEecC--CC
Confidence 9999999999999999999999988764 469999999998875431 1223 589999973 34
Q ss_pred CCCcCccEEEEEecCCCCCCCCcc-----cccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCCceee
Q 003751 426 NFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWE 500 (798)
Q Consensus 426 ~~~~~D~V~~Ri~~~~h~~~gd~~-----~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~w~ 500 (798)
...+.|.|.+.+.+.... .+ +| +|+||||||||||||+|||||||||+||++|||+|.||+++|||..|.|+|
T Consensus 152 ~~~~~D~i~G~~~~~~~~-~~-D~Vi~R~dg~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg~~~P~f~H 229 (445)
T PRK12558 152 PISWDDLIRGEQSIDAAS-LS-DPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALGAKPPVFAH 229 (445)
T ss_pred ceEEEEEeeeEeeccccc-CC-CeEEEecCCCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhCCCCCeEEE
Confidence 556778877777655432 22 34 579999999999999999999999999999999999999999999998888
Q ss_pred eee-ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhhh
Q 003751 501 YSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELN 579 (798)
Q Consensus 501 f~~-Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~ 579 (798)
.++ ++.+|+|||||+++ .+|.+||++||+|+||+||++.+||+.++. ++..++++++.|..
T Consensus 230 ~pli~~~~g~KLSKR~g~----------------~sv~~~r~~G~~Peai~n~la~lG~s~~~~--e~~~~~eli~~F~l 291 (445)
T PRK12558 230 LSLLTGADGKGLSKRLGG----------------LSIRSLREDGIEPMAIASLLARLGTSDPVE--PYTSMEELAESFDL 291 (445)
T ss_pred cccccCCCcccccccCCC----------------cCHHHHHHCCCCHHHHHHHHHHHcCCCCCc--ccCCHHHHHHhCCH
Confidence 876 47899999999986 689999999999999999999999998754 45688999999999
Q ss_pred ccCCcceeEecceeEEEEe
Q 003751 580 KTAPRTMVVLNPLKVVITN 598 (798)
Q Consensus 580 ~~~~R~~av~dp~kl~i~N 598 (798)
.++++.+++||+.||.|.|
T Consensus 292 ~~~~~~~~~fd~~KL~w~N 310 (445)
T PRK12558 292 SSFSRAPAKFDPEDLERLN 310 (445)
T ss_pred hhCCCccccCCHHHHHHHH
Confidence 9999999999999999877
No 19
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.7e-72 Score=601.34 Aligned_cols=298 Identities=21% Similarity=0.319 Sum_probs=270.5
Q ss_pred CeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCc---------c
Q 003751 274 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---------I 344 (798)
Q Consensus 274 g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~---------i 344 (798)
..|||||||||||+||+|.+||||+||+|||++||+|||||||||.+|.++++.+.|.++|+|+||.||+ +
T Consensus 32 ~~VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDTDq~R~v~gs~e~i~~~L~w~nl~~DEgP~~gG~~GP 111 (524)
T KOG1149|consen 32 ACVRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDTDQKRLIRGSEEAIYEDLKWANLDWDEGPGVGGPFGP 111 (524)
T ss_pred ceeEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEeccccccccccchHHHHHHHHHhcCCCcccCCCcCCCCCc
Confidence 4599999999999999999999999999999999999999999999999999999999999999999995 5
Q ss_pred cCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhc--------cCCCCCCCCCChHHHHHHHHHhhcCcccCC-ceE
Q 003751 345 TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KAT 415 (798)
Q Consensus 345 ~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~--------~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g-~~~ 415 (798)
|.||+|.++|.++|+.|++.|+||+||||.+++...|. ++|+..||+++.+|... | .+.| ++|
T Consensus 112 Y~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~kca~ls~~ei~~----~----lakg~pf~ 183 (524)
T KOG1149|consen 112 YEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDRKCANLSDAEIKQ----K----LAKGTPFT 183 (524)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccchhcccCHHHHHH----H----HhcCCCee
Confidence 89999999999999999999999999999999988875 57999999999987543 2 2234 799
Q ss_pred EEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc----cccccccccceeeccCCCcceEecCcccccchhhHHHHHHHh
Q 003751 416 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 491 (798)
Q Consensus 416 lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~----~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aL 491 (798)
+|||++- .++.+.|+|.+.+......+.||.. +|+||||||||||||+|||||||||.||++||++|..||+||
T Consensus 184 iRFrl~~--~~~~f~DLvyG~v~~~~d~~~gD~VvmKSDgfPTYHfAnVVDDh~M~IsHViRGeEWlpST~KH~lLYkAf 261 (524)
T KOG1149|consen 184 IRFRLPK--ESPPFTDLVYGKVNHNVDSNEGDPVVMKSDGFPTYHFANVVDDHLMGISHVIRGEEWLPSTLKHILLYKAF 261 (524)
T ss_pred EEEecCC--CCCChhhhhhhhhhccccccCCCcEEEecCCCcceeeeeeecchhcchhheeecchhccccHHHHHHHHHh
Confidence 9999873 4788999999999777766666643 799999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeee-ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhH
Q 003751 492 GLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRL 570 (798)
Q Consensus 492 g~~~P~~w~f~~-Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~L 570 (798)
||.+|.+.|.+. +|.+|+|||||++. .++..|+++||.|+|+.|||+.+||+..... +...|
T Consensus 262 gW~pPkFaHlpLl~n~d~sKLSKRqgD----------------~~vs~~~e~G~LPeallN~ial~Gwg~~~~~-~f~sl 324 (524)
T KOG1149|consen 262 GWQPPKFAHLPLLLNPDGSKLSKRQGD----------------ASVSHYREQGYLPEALLNYIALLGWGFRTEN-EFFSL 324 (524)
T ss_pred CCCCCceeeeeeeecCCcchhhhhcCc----------------chHHHHHHcCCChHHHHHHHHHcCCCccccc-ccccH
Confidence 999995544443 59999999999997 5899999999999999999999999988654 67889
Q ss_pred HHHHHHhhhccCCcceeEecceeEEEEe
Q 003751 571 EYHIREELNKTAPRTMVVLNPLKVVITN 598 (798)
Q Consensus 571 e~~ir~~~~~~~~R~~av~dp~kl~i~N 598 (798)
++++.+|..+++.+..+++|+.||.+.|
T Consensus 325 ~eLieqF~i~~ltk~~a~ld~ekL~~~N 352 (524)
T KOG1149|consen 325 EELIEQFSIERLTKSNAILDSEKLRFLN 352 (524)
T ss_pred HHHHHHhchhhhcccccccCHHHHHHHH
Confidence 9999999999999999999999998777
No 20
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=100.00 E-value=2.4e-69 Score=578.16 Aligned_cols=281 Identities=19% Similarity=0.207 Sum_probs=241.6
Q ss_pred CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCc-ccCCchhH
Q 003751 273 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYF 351 (798)
Q Consensus 273 ~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~-i~yqSd~~ 351 (798)
..+|+|||||||||+|||||+|+||+||++||++||+|+|||||||++|+.++|++.|+++|+||||+||+ ++|||+|+
T Consensus 3 ~~~v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~QS~r~ 82 (299)
T PRK05710 3 MTPYIGRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWLGLHWDGPVLYQSQRH 82 (299)
T ss_pred CCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCCccchHHHHHHHHHHHHCCCCCCCCceEeeccH
Confidence 34699999999999999999999999999999999999999999999999999999999999999999995 99999999
Q ss_pred HHHHHHHHHHHHcCCccccCCCHHHHHHHh----c--cCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCC
Q 003751 352 QELYELAVELIRRGHAYVDHQTPEEIKEYR----E--KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQND 425 (798)
Q Consensus 352 ~~~ye~a~~LI~~G~AY~C~cs~eel~~~r----~--~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~ 425 (798)
+.|++++++|+++|+||+|+||+++|++.| + +.|+++||+++.+++ .+++||+|++ .+
T Consensus 83 ~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~--------------~~~~iRlk~~--~~ 146 (299)
T PRK05710 83 DAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPR--------------NPPAWRLRVP--DA 146 (299)
T ss_pred HHHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCcccc--------------CCceEEEEcC--CC
Confidence 999999999999999999999999998876 1 479999999987642 1689999987 23
Q ss_pred CCCcCccEEEEEecCCCCCCCCcc-----cccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCCceee
Q 003751 426 NFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWE 500 (798)
Q Consensus 426 ~~~~~D~V~~Ri~~~~h~~~gd~~-----~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~w~ 500 (798)
...+.|.+.+.+...+....| +| +|+||||||||||||+|||||||||.||+++|++|.||+++||+..|.|.|
T Consensus 147 ~~~~~D~~~G~~~~~~~~~~~-D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~y~H 225 (299)
T PRK05710 147 VIAFDDRLQGRQHQDLALAVG-DFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLGLPTPRYLH 225 (299)
T ss_pred ceEEEEecceeEeeCCCCCCC-CEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcCCCCCeEEE
Confidence 444556555555444332223 22 479999999999999999999999999999999999999999999999999
Q ss_pred eeee-cCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhH--HHHHHHh
Q 003751 501 YSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRL--EYHIREE 577 (798)
Q Consensus 501 f~~L-n~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~L--e~~ir~~ 577 (798)
++.+ |.+|+|||||+++. +|.. .|+.|+ +.+|++.+||+.... .+...+ ++++.+|
T Consensus 226 ~pll~~~~g~kLSKr~~~~----------------~i~~---~g~~p~-l~~~l~~lG~~~~~~-~~~~~~~~~~~i~~f 284 (299)
T PRK05710 226 LPLVLNADGQKLSKQNGAP----------------ALDA---AGPLPV-LAAALRFLGQPPPAA-DASVEELLAQAVAHW 284 (299)
T ss_pred eecccCCCCCcccccCCcc----------------chhh---cCcCHH-HHHHHHHcCCCCCcc-ccccccCHHHHHHhC
Confidence 9874 99999999999874 4444 799999 999999999987643 122223 7889999
Q ss_pred hhccCCcceeEecc
Q 003751 578 LNKTAPRTMVVLNP 591 (798)
Q Consensus 578 ~~~~~~R~~av~dp 591 (798)
....+++..+++.+
T Consensus 285 ~~~~~~~~~~~~~~ 298 (299)
T PRK05710 285 DLTRLPRQAEINPA 298 (299)
T ss_pred CHhhCCcCCccCCC
Confidence 88889988887754
No 21
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=3.5e-69 Score=560.03 Aligned_cols=238 Identities=33% Similarity=0.563 Sum_probs=229.4
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCccc--chHHHHHHHHHHHHHcCCCCCcccCCchhHH
Q 003751 275 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA--EKKEYIDHIEEIVQWMGWEPFKITYTSDYFQ 352 (798)
Q Consensus 275 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~R--e~~e~~~~I~edL~wLGl~pd~i~yqSd~~~ 352 (798)
+|+|||||||||+|||||+|+|++||++||+++|+|+|||||||++| +.+++++.|+++|+|||+.||++++||+|++
T Consensus 1 ~v~~RfaPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~~~i~~dL~wLGl~~d~~~~qS~r~~ 80 (240)
T cd09287 1 KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPEDLEWLGVKWDEVVIASDRIE 80 (240)
T ss_pred CceEeCCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcccchHHHHHHHHHHHHHcCCCCCCccchhccHH
Confidence 48999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCCcCcc
Q 003751 353 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 432 (798)
Q Consensus 353 ~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~ 432 (798)
.|++++++|+++|+||+
T Consensus 81 ~y~~~~~~Li~~G~aY~--------------------------------------------------------------- 97 (240)
T cd09287 81 LYYEYARKLIEMGGAYV--------------------------------------------------------------- 97 (240)
T ss_pred HHHHHHHHHHHcCCccc---------------------------------------------------------------
Confidence 99999999999999997
Q ss_pred EEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCCceeeeeeecCCCeeee
Q 003751 433 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMS 512 (798)
Q Consensus 433 V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~w~f~~Ln~~g~KLS 512 (798)
|++.|++|.++|||||||||||++|||||||||.||+++|+.|.||+++||+..|.|+|+++++.+|+|||
T Consensus 98 ---------~~~~~~~~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~~~Lg~~~P~~~H~pll~~~~~kLS 168 (240)
T cd09287 98 ---------HPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWGRLKIEGGKLS 168 (240)
T ss_pred ---------CcccCCcEEEEEccccceeeeccccCCCeEEechhhhhCCHHHHHHHHHcCCCCCcEEeeeeecCCCCeec
Confidence 12234567778999999999999999999999999999999999999999999999999999998999999
Q ss_pred ccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhhhccCCc
Q 003751 513 KRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPR 584 (798)
Q Consensus 513 KR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R 584 (798)
||+++++|++|.|.||||||++|+++||++|++|+||++|+..+|||.++..+++++|++++|+.+++.++|
T Consensus 169 KR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r~~l~~~~~r 240 (240)
T cd09287 169 TSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINRKLIDPRANR 240 (240)
T ss_pred cccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987
No 22
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2e-69 Score=613.61 Aligned_cols=299 Identities=25% Similarity=0.327 Sum_probs=267.5
Q ss_pred CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCcc--------
Q 003751 273 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKI-------- 344 (798)
Q Consensus 273 ~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~i-------- 344 (798)
.++|||||||||||+|||||+||||+||++||++||+|+|||||||++|+.++++++|+++|+||||+||+.
T Consensus 2 ~~~v~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~~R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gp 81 (476)
T PRK01406 2 MMKVRTRFAPSPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEGLKWLGLDWDEGPDGGPYGP 81 (476)
T ss_pred CCceeEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCCCChHHHHHHHHHHHHCCCCCCCCCccCCCCc
Confidence 356999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred cCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhc--------cCCCCCCCCCChHHHHHHHHHhhcCcccCCceEE
Q 003751 345 TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 416 (798)
Q Consensus 345 ~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~--------~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~l 416 (798)
|+||+|++.|+++|++|+++|+||+|+||++++.+.|. +.|+++||+++.+|... .+.+|. ++++
T Consensus 82 y~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~---~~~~g~----~~~i 154 (476)
T PRK01406 82 YRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAA---RLAAGE----PPVI 154 (476)
T ss_pred eehhcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHH---HHhCCC----CeeE
Confidence 99999999999999999999999999999999998864 46999999999987643 233332 6999
Q ss_pred EEEecCCCCCCCcCccEEEEEecCCCCCCCCcc----cccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhC
Q 003751 417 RMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG 492 (798)
Q Consensus 417 R~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~----~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg 492 (798)
|+|++. .+...+.|.|.+++.+.... .+|.- +|+||||||++||||+|+|||||||.||+.++++|.+++++||
T Consensus 155 R~k~p~-~~~~~~~D~i~G~~~~~~~~-~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG 232 (476)
T PRK01406 155 RFKVPD-EGEVVFDDLVRGEIEFPNSE-LDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALG 232 (476)
T ss_pred EEEcCC-CCceEEEEeccceEEecccc-CCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhC
Confidence 999874 35677888888888765543 23321 6899999999999999999999999999999999999999999
Q ss_pred CCCCceeeeee-ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHH
Q 003751 493 LYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLE 571 (798)
Q Consensus 493 ~~~P~~w~f~~-Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le 571 (798)
+..|.+.|+++ +|.+|.|||||++. .+|.+||++||.|+|+.||++.+||+.... +...++
T Consensus 233 ~~~p~~~H~pli~~~~g~klSKR~g~----------------~~l~~l~~~G~~p~Ai~n~l~~lG~s~~~~--e~~~~~ 294 (476)
T PRK01406 233 WEVPVFAHLPLILGPDGKKLSKRHGA----------------TSVEQYRDMGYLPEALLNYLALLGWSHGDQ--EIFSLE 294 (476)
T ss_pred CCCCeEEEeeeeeCCCCCcccCcCCc----------------cCHHHHHHCCCCHHHHHHHHHHhCCCCCcc--ccCCHH
Confidence 99998878776 59999999999985 589999999999999999999999996643 556788
Q ss_pred HHHHHhhhccCCcceeEecceeEEEEe
Q 003751 572 YHIREELNKTAPRTMVVLNPLKVVITN 598 (798)
Q Consensus 572 ~~ir~~~~~~~~R~~av~dp~kl~i~N 598 (798)
++++.|....+++.+++||+.||.|.|
T Consensus 295 ~~i~~f~l~~~~~s~~~fd~~kL~~~N 321 (476)
T PRK01406 295 ELIELFDLERVSKSPARFDIKKLDWLN 321 (476)
T ss_pred HHHHhcChhhCCCCCccccHHHHHHHH
Confidence 999999999999999999999999877
No 23
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.3e-69 Score=609.38 Aligned_cols=308 Identities=22% Similarity=0.315 Sum_probs=270.2
Q ss_pred CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCC-cccCCchhH
Q 003751 273 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPF-KITYTSDYF 351 (798)
Q Consensus 273 ~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd-~i~yqSd~~ 351 (798)
+.+|||||||||||+|||||||+||+||+|||++||+|+|||||||++|+.++++++|+++|+|||++|| .+|+||+|+
T Consensus 2 ~~~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~i~~~L~WLGl~wDe~py~QSeR~ 81 (513)
T PRK14895 2 NNNVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLKWLGLDWNGEVIFQSKRN 81 (513)
T ss_pred CCCeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCCCceeEeCcH
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999 589999999
Q ss_pred HHHHHHHHHHHHcCCccccCCCHHHHHHHhc--------cCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCC
Q 003751 352 QELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ 423 (798)
Q Consensus 352 ~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~--------~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~ 423 (798)
+.|+++|++|+++|+||+|+||++++++.|. ++|++.||+++.++. ...+++++|||++.
T Consensus 82 ~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~-----------~~~~~~~iR~k~p~- 149 (513)
T PRK14895 82 NLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIY-----------PTDIKPVIRLKTPR- 149 (513)
T ss_pred HHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhh-----------hcCCCeeEEEEcCC-
Confidence 9999999999999999999999999998874 469999999876531 12347899999974
Q ss_pred CCCCCcCccEEEEEecCCCCCCCCcc-----cccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCCce
Q 003751 424 NDNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYV 498 (798)
Q Consensus 424 ~~~~~~~D~V~~Ri~~~~h~~~gd~~-----~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~ 498 (798)
.+...+.|.|.+.+.+.... .+ ++ +|.||||||++||||+|||||||||.||+.++++|.+|+++||+..|.+
T Consensus 150 ~~~~~~~D~v~G~~~~~~~~-~~-D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG~~~p~~ 227 (513)
T PRK14895 150 EGSITIHDTLQGEVVIENSH-ID-DMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFGYAVPSM 227 (513)
T ss_pred CCceEEEeecccceeccccc-CC-CcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcCCCCCeE
Confidence 34556777777777655433 23 33 6799999999999999999999999999999999999999999999988
Q ss_pred eeeeee-cCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHh
Q 003751 499 WEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREE 577 (798)
Q Consensus 499 w~f~~L-n~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~ 577 (798)
.|++.+ |.+|.|||||+++ .+|.+||++||.|+||+||++.|||+..+. ++..++++++.|
T Consensus 228 ~H~plv~~~~g~KLSKR~g~----------------~~i~~~r~~G~~Peai~n~la~LG~s~~~~--e~~~~~el~~~F 289 (513)
T PRK14895 228 THIPLIHGADGAKLSKRHGA----------------LGIEAYKDMGYLPESLCNYLLRLGWSHGDD--EIISMTQAIDWF 289 (513)
T ss_pred EEEEeEEcCCCCccccccCc----------------hhHHHHHHCCCCHHHHHHHHHHhCCCCCCc--CCCCHHHHHhhC
Confidence 888875 6999999999987 579999999999999999999999997643 567889999999
Q ss_pred hhccCCcceeEecceeEEEEe------CCCCceeeeccccC
Q 003751 578 LNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKRW 612 (798)
Q Consensus 578 ~~~~~~R~~av~dp~kl~i~N------~~~~~~~~~~~p~~ 612 (798)
....+++++++||+.||.|.| ++.+++....+|++
T Consensus 290 ~~~~v~~s~~~FD~~KL~wlN~~yi~~l~~~el~~~~~~~l 330 (513)
T PRK14895 290 NLDSLGKSPSKLDFAKMNSLNAHYLRMLDNDSLTSKTVEIL 330 (513)
T ss_pred CHHhCcCCcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999877 55555444444554
No 24
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=100.00 E-value=2.2e-68 Score=604.67 Aligned_cols=297 Identities=23% Similarity=0.302 Sum_probs=267.6
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCC-cccCCchhHHH
Q 003751 275 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPF-KITYTSDYFQE 353 (798)
Q Consensus 275 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd-~i~yqSd~~~~ 353 (798)
+|||||||||||+|||||||+||+||++||++||+|+|||||||++|+.++++++|+++|+||||+|| ++++||+|++.
T Consensus 1 ~v~~RfAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~de~~~~QS~r~~~ 80 (470)
T TIGR00464 1 KVRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDTDLERNIEEAEEAILEGLKWLGISWDEGPYYQSQRLDI 80 (470)
T ss_pred CceEeeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCccCChHHHHHHHHHHHHCCCCCCCCeeehhCCHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999 69999999999
Q ss_pred HHHHHHHHHHcCCccccCCCHHHHHHHhc--------cCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCC
Q 003751 354 LYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQND 425 (798)
Q Consensus 354 ~ye~a~~LI~~G~AY~C~cs~eel~~~r~--------~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~ 425 (798)
|+++|++||++|+||+|+||++++++.|. ++|+++||+++.+++...+. ..++++||+|++. ..
T Consensus 81 y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~-------~g~~~~iR~k~~~-~~ 152 (470)
T TIGR00464 81 YKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLA-------KGIPPVVRFKIPQ-EA 152 (470)
T ss_pred HHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHh-------cCCCceEEEEcCC-CC
Confidence 99999999999999999999999988763 47999999999987654221 2347999999985 34
Q ss_pred CCCcCccEEEEEecCCCCCCCCcc-----cccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCCceee
Q 003751 426 NFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWE 500 (798)
Q Consensus 426 ~~~~~D~V~~Ri~~~~h~~~gd~~-----~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~w~ 500 (798)
...|.|.|.|++.+.++.. + ++ +|+||||||++|||++|||||||||.||+.++++|.+|+++||+..|.+.|
T Consensus 153 ~~~~~D~~~G~~~~~~~~~-~-D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H 230 (470)
T TIGR00464 153 VVSFNDQVRGEITFQNSEL-D-DFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALGWKIPVFAH 230 (470)
T ss_pred ceeEEecccceEEecCccC-C-CeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcCCCCCeEEE
Confidence 5788999999998776543 3 33 689999999999999999999999999999999999999999999998888
Q ss_pred eee-ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhhh
Q 003751 501 YSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELN 579 (798)
Q Consensus 501 f~~-Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~ 579 (798)
++. +|.+|+|||||++. .+|.+|+++||.|+|+.+|++.+||+.... -+...++++++.|..
T Consensus 231 ~p~l~~~~g~kLSKR~g~----------------~~l~~l~~~g~~p~a~~~~~~~lG~~~~~~-~e~~~~~~~i~~f~l 293 (470)
T TIGR00464 231 LPMILDEDGKKLSKRDGA----------------TSIMQFKEQGYLPEALINYLALLGWSPPDD-QEFFSLEELIEIFSL 293 (470)
T ss_pred EeeeecCCCccccccCCC----------------ccHHHHHHCCCCHHHHHHHHHHcCCCCCCc-cccCCHHHHHHhcCc
Confidence 877 58899999999984 689999999999999999999999987643 234567899999999
Q ss_pred ccCCcceeEecceeEEEEe
Q 003751 580 KTAPRTMVVLNPLKVVITN 598 (798)
Q Consensus 580 ~~~~R~~av~dp~kl~i~N 598 (798)
..+++..++||..|+.|.|
T Consensus 294 ~~~~~~~~~fd~~kL~~~N 312 (470)
T TIGR00464 294 NRVSKSPAKFDWKKLQWLN 312 (470)
T ss_pred ccCCCCCCeecHHHHHHHH
Confidence 9999999999999998777
No 25
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=100.00 E-value=2.9e-67 Score=556.33 Aligned_cols=260 Identities=19% Similarity=0.189 Sum_probs=223.9
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCc-ccCCchhHHHH
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQEL 354 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~-i~yqSd~~~~~ 354 (798)
++|||||||||+|||||||+||+||++||++||+|+|||||||++|+.++|+++|+++|+||||+||+ +++||+|++.|
T Consensus 1 ~~~RFAPSPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~~R~~~~~~~~I~~dL~wLGl~wDe~~~~QS~r~~~Y 80 (272)
T TIGR03838 1 YRGRFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYGLHWDGEVVYQSQRHALY 80 (272)
T ss_pred CeeeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeeeeCCHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999996 67999999999
Q ss_pred HHHHHHHHHcCCccccCCCHHHHHHHh-c--cCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCCcCc
Q 003751 355 YELAVELIRRGHAYVDHQTPEEIKEYR-E--KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 431 (798)
Q Consensus 355 ye~a~~LI~~G~AY~C~cs~eel~~~r-~--~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D 431 (798)
+++|++|+++|+||+|+||++||++.| + +.|++.||+ +.. ...+++++||+|++. .+..|.|
T Consensus 81 ~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~-~~~------------~~~~~~~~~Rlk~~~--~~~~~~D 145 (272)
T TIGR03838 81 QAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRN-GLL------------GRPARPAAWRLRVPD--GVIAFDD 145 (272)
T ss_pred HHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhc-ccc------------cccCCCceEEEecCC--CCceEEE
Confidence 999999999999999999999999884 2 468889998 320 123457899999873 5778999
Q ss_pred cEEEEEecCCCCCCCCcc-----cccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCCceeeeee-ec
Q 003751 432 LIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSR-LN 505 (798)
Q Consensus 432 ~V~~Ri~~~~h~~~gd~~-----~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~w~f~~-Ln 505 (798)
.+.+++.+.+ +...++| +|+||||||||||||+|||||||||+||+++|++|.||+++|||..|.|.|+++ +|
T Consensus 146 ~~~g~~~~~~-~~~~~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~ 224 (272)
T TIGR03838 146 RLQGPQQQDL-AAAVGDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLPLVVN 224 (272)
T ss_pred eeeeEEEecC-cccCCCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhCCCCCeEEechhhhC
Confidence 9999997543 3344567 459999999999999999999999999999999999999999999998888887 49
Q ss_pred CCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHH
Q 003751 506 VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 572 (798)
Q Consensus 506 ~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~ 572 (798)
.+|+|||||+++.+|+++ + +++++.+|+..+||+.... .+...+++
T Consensus 225 ~~g~kLSKR~~~~~i~~~------~--------------~~~~~~~~l~~lG~~~~~~-~~~~~~~~ 270 (272)
T TIGR03838 225 ADGEKLSKQNGAPALDLS------H--------------PLPALLAALRFLGLPPPPE-LAAASPAE 270 (272)
T ss_pred CCCCeeeccCCccchhcC------C--------------cHHHHHHHHHHcCCCCCcc-cccCCHHH
Confidence 999999999998766542 2 3567888888888876532 23344444
No 26
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=100.00 E-value=6.8e-62 Score=503.46 Aligned_cols=222 Identities=36% Similarity=0.551 Sum_probs=209.2
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCc-ccCCchhHHH
Q 003751 275 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQE 353 (798)
Q Consensus 275 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~-i~yqSd~~~~ 353 (798)
+|+|||||||||+|||||+|+|++||++||++||+|+|||||||++|+.++|++.|+++|+|||++||+ +++||+|++.
T Consensus 1 ~v~~RFAPsPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~~~~~QS~r~~~ 80 (230)
T cd00418 1 TVVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDEGPYRQSDRFDL 80 (230)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeehhcCHHH
Confidence 479999999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccE
Q 003751 354 LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI 433 (798)
Q Consensus 354 ~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V 433 (798)
|+++|++|+++|
T Consensus 81 y~~~~~~L~~~g-------------------------------------------------------------------- 92 (230)
T cd00418 81 YRAYAEELIKKG-------------------------------------------------------------------- 92 (230)
T ss_pred HHHHHHHHHHcC--------------------------------------------------------------------
Confidence 999999999999
Q ss_pred EEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCCceeeeeee-cCCCeeee
Q 003751 434 AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMS 512 (798)
Q Consensus 434 ~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~w~f~~L-n~~g~KLS 512 (798)
|+|||||||||||++|||||||||.||++||++|.||+++||++.|.|+|++++ +.+|+|||
T Consensus 93 -----------------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg~~~P~~~H~pll~~~~g~KLS 155 (230)
T cd00418 93 -----------------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDGTKLS 155 (230)
T ss_pred -----------------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcCCCCCeEEEeeeeeCCCCCCcc
Confidence 489999999999999999999999999999999999999999999999999987 66789999
Q ss_pred ccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhhhccCCcceeEecce
Q 003751 513 KRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPL 592 (798)
Q Consensus 513 KR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~dp~ 592 (798)
||+++ .||++||++|++|+||++|++.+||+.... -++..++++++.|....+++..++||+.
T Consensus 156 Kr~~~----------------~~i~~~r~~G~~p~ai~~~l~~lG~~~~~~-~~~~~~~~li~~f~~~~~~~~~~~~d~~ 218 (230)
T cd00418 156 KRKLN----------------TTLRALRRRGYLPEALRNYLALIGWSKPDG-HELFTLEEMIAAFSVERVNSADATFDWA 218 (230)
T ss_pred CcCCC----------------cCHHHHHHCCCcHHHHHHHHHHcCCCCCCC-ccccCHHHHHHhcCHhhCCCCCcccCHH
Confidence 99986 689999999999999999999999987542 2445677899999999999999999999
Q ss_pred eEEEEe
Q 003751 593 KVVITN 598 (798)
Q Consensus 593 kl~i~N 598 (798)
||.+.|
T Consensus 219 kL~~~N 224 (230)
T cd00418 219 KLEWLN 224 (230)
T ss_pred HHHHHH
Confidence 987766
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=5.6e-58 Score=477.41 Aligned_cols=223 Identities=26% Similarity=0.387 Sum_probs=210.1
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCc---------cc
Q 003751 275 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---------IT 345 (798)
Q Consensus 275 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~---------i~ 345 (798)
+|+|||||||||+|||||+|+|++||++||++||+|+|||||||++|+.+++++.|+++|+|||++||+ ++
T Consensus 1 ~v~~RfAPsPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~ 80 (239)
T cd00808 1 KVRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPY 80 (239)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCE
Confidence 489999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred CCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCC
Q 003751 346 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQND 425 (798)
Q Consensus 346 yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~ 425 (798)
+||+|++.|++++++|+++|
T Consensus 81 ~QS~r~~~y~~~~~~L~~~g------------------------------------------------------------ 100 (239)
T cd00808 81 RQSERLEIYRKYAEKLLEKG------------------------------------------------------------ 100 (239)
T ss_pred eeeCCHHHHHHHHHHHHHcC------------------------------------------------------------
Confidence 99999999999999999988
Q ss_pred CCCcCccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCCceeeeeee-
Q 003751 426 NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL- 504 (798)
Q Consensus 426 ~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~w~f~~L- 504 (798)
+|+|||+||+||||++|||||||||.||+.++++|.||+++||++.|.|+|++++
T Consensus 101 ------------------------dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~~aLg~~~p~~~h~pll~ 156 (239)
T cd00808 101 ------------------------DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGWEPPKFAHLPLIL 156 (239)
T ss_pred ------------------------CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHHHHcCCCCCceEeecccc
Confidence 3589999999999999999999999999999999999999999999999999985
Q ss_pred cCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhhhccCCc
Q 003751 505 NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPR 584 (798)
Q Consensus 505 n~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R 584 (798)
|.+|.|||||+++ .||++||++|++|+||++|++.+|++..+.. ....+++++++|....+++
T Consensus 157 ~~~g~KLSKR~~~----------------~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~~-~~~~~~~l~~~f~~~~~~~ 219 (239)
T cd00808 157 NPDGKKLSKRKGD----------------TSISDYREEGYLPEALLNYLALLGWSPPDGE-EFFTLEELIELFDLERVSK 219 (239)
T ss_pred CCCCCcccCCCCC----------------ccHHHHHHCCCCHHHHHHHHHHcCCCCCCCC-CcCCHHHHHhcCCHhhCCc
Confidence 9999999999987 6999999999999999999999999877532 4566788999999999999
Q ss_pred ceeEecceeEEEEe
Q 003751 585 TMVVLNPLKVVITN 598 (798)
Q Consensus 585 ~~av~dp~kl~i~N 598 (798)
.+++||+.||...|
T Consensus 220 ~~~~~d~~kL~~~n 233 (239)
T cd00808 220 SPAIFDPEKLDWLN 233 (239)
T ss_pred CcCcCCHHHHHHHH
Confidence 99999999986655
No 28
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=100.00 E-value=1.2e-48 Score=385.94 Aligned_cols=162 Identities=51% Similarity=0.822 Sum_probs=136.9
Q ss_pred ChhHHHHHHHhcCCChhhHHHhhhCHHHHHHHHHHHHHcccCCCCchhhhHHHHHHHhhCCCCCCCchHHHHHHHhcCCC
Q 003751 8 DKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHRPTLLLYIVSSKI 87 (798)
Q Consensus 8 ~~~~~~~~f~~iGl~e~ka~e~~kn~~~~~~l~~~I~~a~~~~~~~~~~g~lly~la~~~~~~~~~~~~~~~~yI~~~~i 87 (798)
+++++++||++|||+|+||+||+||++++++|.++|++|+...+||+++|+|||+|||+++++..+||++|++||++|+|
T Consensus 2 s~eel~~lF~~iGL~e~kAket~KN~kls~~L~~iI~ea~~~~~~dk~~g~LLy~lAtk~k~~~~~~r~~iv~~I~~gkl 81 (164)
T PF04558_consen 2 SEEELIELFKSIGLSEKKAKETLKNKKLSASLKAIINEAGVDSGCDKKQGNLLYQLATKLKPQALPHRPFIVKYIVDGKL 81 (164)
T ss_dssp -HHHHHHHHHHTT--HHHHHHHTTSHHHHHHHHHHHHTS-TT----HHHHHHHHHHHHHHTT---TTHHHHHHHHHTTS-
T ss_pred ChHHHHHHHHHcCCChhhHHHHHhCHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHhCCC
Confidence 46899999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccc-cchhhhHHHHHhhCCCC
Q 003751 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYR-TNVGDLFAHVRKRLPWA 166 (798)
Q Consensus 88 kt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~~RY~-~n~g~l~~~~r~~lkwa 166 (798)
+|++||+||++|+++|+.+++|.++||++|||||+||+|||+++|++||++|+++|+++||+ ||+|.++.++|..||||
T Consensus 82 kt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cGVGV~VT~E~I~~~V~~~i~~~k~~i~~~Ry~~~~~~~~~~k~~~~LkWA 161 (164)
T PF04558_consen 82 KTNLQLDAALKYLKSNPSEPIDVAEFEKACGVGVVVTPEQIEAAVEKYIEENKEEILEKRYRLFNIGLLLVKVRPSLKWA 161 (164)
T ss_dssp -SHHHHHHHHHHHHHHGG-G--HHHHHHTTTTT----HHHHHHHHHHHHHHTHHHHHHHGGGGHHHHHHHHHT-GGGTTS
T ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHcCCCeEECHHHHHHHHHHHHHHhHHHHHHHHhccCchhhHHHHHhccCCCC
Confidence 99999999999999998668999999999999999999999999999999999999999999 99999999999999999
Q ss_pred Chh
Q 003751 167 DPK 169 (798)
Q Consensus 167 d~~ 169 (798)
|||
T Consensus 162 d~k 164 (164)
T PF04558_consen 162 DGK 164 (164)
T ss_dssp -T-
T ss_pred CCC
Confidence 996
No 29
>PF03950 tRNA-synt_1c_C: tRNA synthetases class I (E and Q), anti-codon binding domain; InterPro: IPR020059 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2HZ7_A 3AII_A 1ZJW_A 1GTS_A 2RD2_A 1QRU_A 1O0B_A 1NYL_A 1EUQ_A 2RE8_A ....
Probab=100.00 E-value=3.3e-42 Score=344.43 Aligned_cols=171 Identities=43% Similarity=0.735 Sum_probs=142.7
Q ss_pred CCcceeEecceeEEEEeCCCCceeeeccccCCCCCCCCCCceeEeccccceeeecccccccCCccccCcCCCCEEEEeee
Q 003751 582 APRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYA 661 (798)
Q Consensus 582 ~~R~~av~dp~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~~v~l~~~ 661 (798)
+||+|||.||++|.|+|+|++....+++|+||+ +|++|+|.++|+++||||++| |+||+||+.|+|+++
T Consensus 1 A~R~maV~dPv~v~I~n~~~~~~~~~~~p~hPk---~~~~G~r~v~~~~~i~Ie~~D--------~~~l~~g~~v~L~~~ 69 (174)
T PF03950_consen 1 APRYMAVLDPVKVKITNFPEDEPEEIEVPLHPK---NPELGTREVPFSKTIYIERSD--------FFRLAPGKEVRLMYW 69 (174)
T ss_dssp SEEE-EECSEEEEEECT--SSSEEEEEEESSTT----GGG-EEEEEECSEEEEEGGG----------SEETTCEEEETTT
T ss_pred CCcEEEECCCEEEEEEcCCCCCEEEEEecCCCC---CccCceEEEEECceEEEEhhH--------hhhccCCCEEEEecc
Confidence 689999999999999999988888999999998 799999999999999999999 567999999999999
Q ss_pred eeEEEEEeeecCCCCCEEEEEEEEcCCCC---CCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCC
Q 003751 662 FPIKCTEVILSDDKETILHIRAEYDPSKK---TKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNP 738 (798)
Q Consensus 662 ~~i~~~~~~~~~~~g~v~e~~~~~~~~~~---~K~k~~I~WV~~~~~~~~~v~~evr~y~~Lf~~~~p~~~~~~~~~iN~ 738 (798)
|||+|++++ +|.+|.|++++|+|+++.. +|+|++|||||+ .++++||+|+|++||++++ ++ +++ +||
T Consensus 70 ~ni~i~~~~-~~~~g~v~~l~~~~~~~~~~~~~k~k~~I~Wv~~----~~~v~~e~r~yd~Lf~~~~-~~--~~~--inp 139 (174)
T PF03950_consen 70 GNIKITSIE-KDEDGKVTELKARYDPEDKEGAKKPKAIIHWVSA----KDSVPVEVRLYDHLFTVDN-DE--DDL--INP 139 (174)
T ss_dssp EEEEEEEEE-E-TTSSEEEEEEEEECTTHHHHHHHT-EE-EEEG----CC-EEEEEEEE--SBSSS--GG--TGG--B-T
T ss_pred ceEEEEEee-ecCCCCEEEEEEEEecccccCCcccCcEEEEccC----CCCeeeEEEEehhhcCCCc-cc--cce--ECC
Confidence 999999998 8889999999999998643 578889999998 6799999999999999988 64 666 999
Q ss_pred CCceeecceeeccccccCCCCCeEEEEEeeeEEEe
Q 003751 739 DSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD 773 (798)
Q Consensus 739 ~S~~~~~~a~~e~~~~~~~~~~~~QfeR~Gyf~~D 773 (798)
+|+.++..|++|+++.++++|++|||||+|||+||
T Consensus 140 ~s~~~~~~~~~E~~~~~~k~g~~vQfER~Gyf~vD 174 (174)
T PF03950_consen 140 NSLKVVKNGLVEPALKNLKPGDIVQFERRGYFRVD 174 (174)
T ss_dssp TSEEEEEEEEE-GGGGGS-TT-EEEETTTEEEEEE
T ss_pred CCcEEccCEEEchhHHhCCCCCEEeEEEeeEEEeC
Confidence 99998778999999999999999999999999998
No 30
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=4.8e-26 Score=253.81 Aligned_cols=254 Identities=18% Similarity=0.204 Sum_probs=194.6
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH---HcC--CEEEEEeecCCcc-------------cchHHHHHHHHHHHHHcCCC-C
Q 003751 281 PPEPNGYLHIGHAKAMFVDFGLAK---ERG--GYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWE-P 341 (798)
Q Consensus 281 aPsPtG~LHIGharaal~n~l~Ar---~~~--G~~iLRidDTDp~-------------Re~~e~~~~I~edL~wLGl~-p 341 (798)
.|+++.+.||||+|++++-.++.| ..| .+|+.+|+|+|.+ ...+.|+..+.+|++.||+. |
T Consensus 29 GpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~aL~v~~p 108 (464)
T COG0215 29 GPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDALNVLPP 108 (464)
T ss_pred CCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 699999999999999998777766 233 5899999999954 12467899999999999995 6
Q ss_pred CcccCCchhHHHHHHHHHHHHHcCCccccC-CCHH-HHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEE
Q 003751 342 FKITYTSDYFQELYELAVELIRRGHAYVDH-QTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMK 419 (798)
Q Consensus 342 d~i~yqSd~~~~~ye~a~~LI~~G~AY~C~-cs~e-el~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K 419 (798)
+..++.|+|++.+.+++++||++|+||+.. .+.. +.... +.|...-+..+.+ +|+.|. |..
T Consensus 109 ~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f--~~YG~LS~~~~le-------~l~~ga--------r~~ 171 (464)
T COG0215 109 DIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKF--KDYGKLSGRDSLE-------ELQAGA--------RVE 171 (464)
T ss_pred cccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccc--hhhHhhcCCCChh-------HHhhcc--------ccc
Confidence 889999999999999999999999999862 2222 22222 2333222222332 233443 332
Q ss_pred ecCCCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccce----------eeccCCCcceEecCcccccchhhHHHHH
Q 003751 420 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWLL 488 (798)
Q Consensus 420 ~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~-~g~PTY~fa~~----------VDD~l~gITHviRG~E~~~~t~~q~~L~ 488 (798)
++ ..+.+..|||+|+...+..|.|.++| .|+|+||..|+ +|-|--|+.+++ .|+.|...|.-
T Consensus 172 ~~--~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiF---PHHENEiAQse-- 244 (464)
T COG0215 172 VD--EEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIF---PHHENEIAQSE-- 244 (464)
T ss_pred cc--cccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccC---CCcccHHHHHH--
Confidence 22 23566699999999999999999999 89999999997 466667777766 66777766632
Q ss_pred HHhC-CCCCceeee-eeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCcccc
Q 003751 489 HALG-LYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 566 (798)
Q Consensus 489 ~aLg-~~~P~~w~f-~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~ 566 (798)
-+.| -+...||.| ++++++|+||||+.|| +.|++.+..+ |.|+++|.|+++.+++.+ ..++
T Consensus 245 a~~g~~~~a~yWmH~G~l~i~geKMSKSLGN---------------fiti~d~l~~-~~p~~lR~~lls~HYR~p-l~fs 307 (464)
T COG0215 245 AATGVKPFAKYWMHNGFLNIDGEKMSKSLGN---------------FITVRDLLKK-YDPEVLRLFLLSSHYRSP-LDFS 307 (464)
T ss_pred hhhCCCcceeEeEEcceeeecCcCcccccCC---------------eeEHHHHHhh-cCHHHHHHHHHHHHhCCc-cccC
Confidence 2345 345889988 7899999999999998 6899999988 999999999999999865 4577
Q ss_pred HhhHHHHHH
Q 003751 567 LDRLEYHIR 575 (798)
Q Consensus 567 ~~~Le~~ir 575 (798)
.+.|+++..
T Consensus 308 ee~L~~A~~ 316 (464)
T COG0215 308 EELLEEAKK 316 (464)
T ss_pred HHHHHHHHH
Confidence 788887763
No 31
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.92 E-value=2.2e-25 Score=237.98 Aligned_cols=251 Identities=18% Similarity=0.225 Sum_probs=169.0
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCccc-------------chHHHHHHHHHHHHHcCCCC-
Q 003751 281 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPEA-------------EKKEYIDHIEEIVQWMGWEP- 341 (798)
Q Consensus 281 aPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDTDp~R-------------e~~e~~~~I~edL~wLGl~p- 341 (798)
.|+++.+.||||+|++++-+++.| .+..+++++|+|+|.+- -...|++.++++|++||+.+
T Consensus 15 GPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~~Lnv~~p 94 (300)
T PF01406_consen 15 GPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMKALNVLPP 94 (300)
T ss_dssp EEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----
T ss_pred CCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999998776666 56678999999999541 24678999999999999986
Q ss_pred CcccCCchhHHHHHHHHHHHHHcCCccccC-CCHH-HHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEE
Q 003751 342 FKITYTSDYFQELYELAVELIRRGHAYVDH-QTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMK 419 (798)
Q Consensus 342 d~i~yqSd~~~~~ye~a~~LI~~G~AY~C~-cs~e-el~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K 419 (798)
+..++.|++++.+.+++++|+++|+||.-. .+.. ++.+. +.|.... ++.. ++|..|.-.
T Consensus 95 ~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~--~~YG~Ls-~~~~-------~~l~~~~~~--------- 155 (300)
T PF01406_consen 95 DHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKF--PDYGKLS-NQDL-------EDLEAGARV--------- 155 (300)
T ss_dssp SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGS--TTTTTTT-T-SH-------HHHHHCHHH---------
T ss_pred ccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeeccc--ccccccc-ccch-------hhHHhhhhc---------
Confidence 578999999999999999999999999865 2211 11111 3343322 2222 334444321
Q ss_pred ecCCCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccce----------eeccCCCcceEecCcccccchhhHHHHH
Q 003751 420 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWLL 488 (798)
Q Consensus 420 ~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~-~g~PTY~fa~~----------VDD~l~gITHviRG~E~~~~t~~q~~L~ 488 (798)
+....+.+..||++|+......+.|.++| .|+|+||..|+ +|-|.-|+++++ .|+.+...|..-
T Consensus 156 -~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~F---PHHENEiAqs~a- 230 (300)
T PF01406_consen 156 -EVDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIF---PHHENEIAQSEA- 230 (300)
T ss_dssp -TT-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTT---THHHHHHHHHHH-
T ss_pred -ccccccCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCC---CCccchHHHHHH-
Confidence 11234666799999999887778899999 89999999996 567777777766 567777666432
Q ss_pred HHhCCCCCceeee-eeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccH
Q 003751 489 HALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRL 567 (798)
Q Consensus 489 ~aLg~~~P~~w~f-~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~ 567 (798)
+.|-+.+.+|.+ ++|+++|.||||+.++ +.||+.+..+ |+|.++|.||++..++.+ ..++.
T Consensus 231 -~~g~~~a~~W~H~g~l~~~g~KMSKSlgN---------------~~~i~dll~~-~~~~~lR~~~l~~hYr~~-l~~s~ 292 (300)
T PF01406_consen 231 -ATGKPFANYWMHNGHLNVDGEKMSKSLGN---------------FITIRDLLKK-YSPDALRLFLLSTHYRKP-LNFSE 292 (300)
T ss_dssp -HHSS-SEEEEEEE--EEETTCE--TTTT------------------BHHHHHTT-S-HHHHHHHHHTS-TTS--EEE-H
T ss_pred -hhCchHHHHHHHHHHHhhcCccccccCCC---------------EEEHHHHhhc-CCHHHHHHHHhcCCCCCc-cccCH
Confidence 236677889987 7999999999999998 5799999976 999999999999888765 45788
Q ss_pred hhHHHH
Q 003751 568 DRLEYH 573 (798)
Q Consensus 568 ~~Le~~ 573 (798)
+.|+++
T Consensus 293 ~~l~~A 298 (300)
T PF01406_consen 293 ENLEEA 298 (300)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888775
No 32
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.90 E-value=1.7e-23 Score=238.47 Aligned_cols=255 Identities=17% Similarity=0.211 Sum_probs=193.7
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCccc-------------chHHHHHHHHHHHHHcCCCC
Q 003751 280 FPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPEA-------------EKKEYIDHIEEIVQWMGWEP 341 (798)
Q Consensus 280 FaPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDTDp~R-------------e~~e~~~~I~edL~wLGl~p 341 (798)
-.|+|+|++||||+|+++..+.++| .+...|+.++||+|++- -...|.+.+.+++++||+.+
T Consensus 27 cgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~LgI~~ 106 (465)
T TIGR00435 27 CGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALNVLP 106 (465)
T ss_pred ecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3799999999999999999999998 68889999999999642 13678999999999999997
Q ss_pred Cc-ccCCchhHHHHHHHHHHHHHcCCccccC-CCHH-HHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEE
Q 003751 342 FK-ITYTSDYFQELYELAVELIRRGHAYVDH-QTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRM 418 (798)
Q Consensus 342 d~-i~yqSd~~~~~ye~a~~LI~~G~AY~C~-cs~e-el~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~ 418 (798)
+. .+..|+|.+.+++++++|+++|+||.+. .+.- .+... +.|.. ..++.. ++|..|. |.
T Consensus 107 d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~--~~yG~-ls~~~~-------~~~~~~~--------~~ 168 (465)
T TIGR00435 107 PDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKF--KDYGK-LSKQDL-------DQLEAGA--------RV 168 (465)
T ss_pred CcCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEecccc--chhcc-CCCCCH-------HHHhccc--------cc
Confidence 75 5789999999999999999999999764 2110 11111 22322 122222 2344443 22
Q ss_pred EecCCCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccce----------eeccCCCcceEecCcccccchhhHHHH
Q 003751 419 KQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWL 487 (798)
Q Consensus 419 K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~-~g~PTY~fa~~----------VDD~l~gITHviRG~E~~~~t~~q~~L 487 (798)
.. ...+.+..||++|+.....++.|.++| .|.|+||..|+ +|=|..|+.|++ .|+.+...|...
T Consensus 169 ~~--~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~f---pHhene~aqs~a 243 (465)
T TIGR00435 169 DV--DEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIF---PHHENEIAQSEA 243 (465)
T ss_pred Cc--ccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeecccccccc---chHHHHHHHHHH
Confidence 22 234566799999999887788899999 79999999997 677777777776 566666666432
Q ss_pred HHHhCCCCCceeee-eeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCcccc
Q 003751 488 LHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 566 (798)
Q Consensus 488 ~~aLg~~~P~~w~f-~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~ 566 (798)
..|.+.+.+|.+ ++++.+|.|||||+|+ ..++..+.+. |.|+++|-|+++.+++ ++..++
T Consensus 244 --~~g~~~~~~~~h~g~v~~~g~KMSKS~GN---------------~i~~~dll~~-~~~dalR~~ll~~~~~-~~l~fs 304 (465)
T TIGR00435 244 --AFGKQLAKYWMHNGFLMIDNEKMSKSLGN---------------FFTVRDVLKN-YDPEILRYFLLSVHYR-SPLDFS 304 (465)
T ss_pred --hcCCCCCcEEEEeeEEEecCccccccCCC---------------cCCHHHHHHH-CCHHHHHHHHHhCCCC-CCCccC
Confidence 346666778865 7899999999999998 4688998886 9999999999987765 445688
Q ss_pred HhhHHHHHHH
Q 003751 567 LDRLEYHIRE 576 (798)
Q Consensus 567 ~~~Le~~ir~ 576 (798)
.+.|+++.+.
T Consensus 305 ~~~l~~a~~~ 314 (465)
T TIGR00435 305 EELLEAAKNA 314 (465)
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 33
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.90 E-value=6.5e-23 Score=233.83 Aligned_cols=262 Identities=18% Similarity=0.211 Sum_probs=192.1
Q ss_pred CCeeEEE-eCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCccc-------------chHHHHHHHHHH
Q 003751 273 GGNVLTR-FPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEA-------------EKKEYIDHIEEI 333 (798)
Q Consensus 273 ~g~v~tR-FaPsPtG~LHIGharaal~n~l~Ar~-----~~G~~iLRidDTDp~R-------------e~~e~~~~I~ed 333 (798)
++.|... .+|+|+|++||||+|++++.+.+||. ++..|+..+||+|++- -...+.+.+.++
T Consensus 21 ~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~ 100 (463)
T PRK00260 21 PGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHED 100 (463)
T ss_pred CCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3455555 59999999999999999999999985 7789999999999642 156889999999
Q ss_pred HHHcCC-CCCcccCCchhHHHHHHHHHHHHHcCCccccCCCHH-HHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccC
Q 003751 334 VQWMGW-EPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEE 411 (798)
Q Consensus 334 L~wLGl-~pd~i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~e-el~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~ 411 (798)
+++||+ .||..++.|+|.+.+++++++|+++|+||.+.-+.. ++... +.|... .++.. ++|..|.
T Consensus 101 ~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~--~~yg~l-s~~~~-------~~~~~~~--- 167 (463)
T PRK00260 101 MDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRKF--PDYGKL-SGRNL-------DELQAGA--- 167 (463)
T ss_pred HHHcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCeEEEecccc--cccccC-CCCCH-------HHHhccC---
Confidence 999999 567777889999999999999999999996421110 11111 234322 12222 3344442
Q ss_pred CceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccc----------eeeccCCCcceEecCcccccc
Q 003751 412 GKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAH----------CIVDSIENITHSLCTLEFETR 480 (798)
Q Consensus 412 g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~-~g~PTY~fa~----------~VDD~l~gITHviRG~E~~~~ 480 (798)
|. +....+.+..||++|+.....++.|.++| .|.|+||..| .+|-|..|+.|++ .|+.+
T Consensus 168 -----~~--~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~Dlif---pHh~n 237 (463)
T PRK00260 168 -----RV--EVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIF---PHHEN 237 (463)
T ss_pred -----cC--CcccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCC---CchHh
Confidence 22 22344677799999998877788899999 7899999999 3555555665554 46666
Q ss_pred hhhHHHHHHHhCCCCCceeee-eeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCC
Q 003751 481 RASYFWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGIS 559 (798)
Q Consensus 481 t~~q~~L~~aLg~~~P~~w~f-~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s 559 (798)
.-.|.. ...|.+.+.+|.+ ++++.+|.|||||+|+ ..++..+.+. |.|.++|-|+++..+.
T Consensus 238 eiaqs~--a~~g~p~~~~w~H~g~v~~~G~KMSKS~GN---------------~i~~~dll~~-~~~d~lR~~ll~~~~~ 299 (463)
T PRK00260 238 EIAQSE--AATGKPFANYWMHNGFVTVNGEKMSKSLGN---------------FFTIRDLLKK-YDPEVLRFFLLSAHYR 299 (463)
T ss_pred HHHHHH--HhcCCCcceEEEEccEEccCCCcccCcCCC---------------CCCHHHHHHH-cCchHhHHHHHhCCCC
Confidence 655532 1346455668875 7899999999999998 4688888875 9999999999875554
Q ss_pred CCCccccHhhHHHHHHH
Q 003751 560 RSDSLIRLDRLEYHIRE 576 (798)
Q Consensus 560 ~~~~~~~~~~Le~~ir~ 576 (798)
.+..++.+.|+++.+.
T Consensus 300 -~~~~fs~~~l~~a~~~ 315 (463)
T PRK00260 300 -SPLNFSEEALEQAKKA 315 (463)
T ss_pred -CCCccCHHHHHHHHHH
Confidence 3446777777766544
No 34
>PLN02946 cysteine-tRNA ligase
Probab=99.89 E-value=2e-23 Score=239.97 Aligned_cols=254 Identities=15% Similarity=0.142 Sum_probs=195.8
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHHcCCCC-
Q 003751 281 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWEP- 341 (798)
Q Consensus 281 aPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDTDp~-------------Re~~e~~~~I~edL~wLGl~p- 341 (798)
.|+++|++||||+|++++.++++| .+...|+..|||+|.+ .-...|.+.+.++++.||+.+
T Consensus 87 GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~~~LnI~~p 166 (557)
T PLN02946 87 GVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAYLHCLPP 166 (557)
T ss_pred CCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 799999999999999999888887 4667899999999954 124678999999999999974
Q ss_pred CcccCCchhHHHHHHHHHHHHHcCCccccCCCHH-HHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEe
Q 003751 342 FKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQ 420 (798)
Q Consensus 342 d~i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~e-el~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~ 420 (798)
+..+..|+|.+.+.+++++|+++|+||.-..+.. .+... +.|.... ++.. ++|..|. |+.
T Consensus 167 ~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f--~~YG~Ls-~~~l-------~~l~~g~--------rv~- 227 (557)
T PLN02946 167 SVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKF--PEYGKLS-GRKL-------EDNRAGE--------RVA- 227 (557)
T ss_pred CeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcc--hhhhhcC-CCCh-------hHhhcCC--------CCC-
Confidence 4578999999999999999999999996321110 11111 2343221 2222 3344443 332
Q ss_pred cCCCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccce----------eeccCCCcceEecCcccccchhhHHHHHH
Q 003751 421 DMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWLLH 489 (798)
Q Consensus 421 d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~-~g~PTY~fa~~----------VDD~l~gITHviRG~E~~~~t~~q~~L~~ 489 (798)
....+.+..||++|+...+.+|.|.++| .|+|+||..|+ +|-|--|+.+++ .|+.+...|..-
T Consensus 228 -~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~F---PHHENEiAQsea-- 301 (557)
T PLN02946 228 -VDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVF---PHHENEIAQSCA-- 301 (557)
T ss_pred -cccccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccCC---CcccchHHHHHH--
Confidence 2335677799999998877778999999 89999999997 899999999988 788888877532
Q ss_pred HhCCCCCceeee-eeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHh
Q 003751 490 ALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLD 568 (798)
Q Consensus 490 aLg~~~P~~w~f-~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~ 568 (798)
+.|.....||.+ ++++++|.|||||.|+ +.|++.+.+. |.|.++|-|+++.+++. +..++++
T Consensus 302 ~~g~~~a~yW~H~G~v~~~G~KMSKSlGN---------------~itl~dll~~-y~~dalR~~lLs~hyr~-~l~fs~e 364 (557)
T PLN02946 302 ACCDSNISYWIHNGFVTVDSEKMSKSLGN---------------FFTIRQVIDL-YHPLALRLFLLGTHYRS-PINYSDV 364 (557)
T ss_pred HhCCCCCceeeEeeEEEeCCCCcCCcCCC---------------cCCHHHHHHh-cCccceeeeeeccCCCC-CcEecHH
Confidence 346555668865 8899999999999998 5789999986 99999999999877764 4468888
Q ss_pred hHHHHHHH
Q 003751 569 RLEYHIRE 576 (798)
Q Consensus 569 ~Le~~ir~ 576 (798)
.|+++.+.
T Consensus 365 ~L~~a~~~ 372 (557)
T PLN02946 365 QLESASER 372 (557)
T ss_pred HHHHHHHH
Confidence 88877543
No 35
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.89 E-value=5e-23 Score=233.51 Aligned_cols=250 Identities=14% Similarity=0.151 Sum_probs=194.3
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecC----------Ccc-------------cchHHHHHHHHH
Q 003751 281 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDT----------NPE-------------AEKKEYIDHIEE 332 (798)
Q Consensus 281 aPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDT----------Dp~-------------Re~~e~~~~I~e 332 (798)
.|+++.++||||+|++++.++++| .+...|+.+|+|+ |++ .-...|.+.+.+
T Consensus 28 GpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~~~~~f~~ 107 (481)
T PRK14534 28 GPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRFFTEAFFD 107 (481)
T ss_pred CCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 688999999999999998888777 4667899999999 642 124578899999
Q ss_pred HHHHcCCCCCc-ccCCchhHHHHHHHHHHHHHcCCcccc-----CCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhh-
Q 003751 333 IVQWMGWEPFK-ITYTSDYFQELYELAVELIRRGHAYVD-----HQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMR- 405 (798)
Q Consensus 333 dL~wLGl~pd~-i~yqSd~~~~~ye~a~~LI~~G~AY~C-----~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~- 405 (798)
+++.||+.++. .+.+|+|.+.+.+++++|+++|+||.- ||... . +.|.... .+..+ +|.
T Consensus 108 d~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~----~--~~YG~ls-~~~l~-------~l~~ 173 (481)
T PRK14534 108 DCKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC----F--KSYGQMA-GINLN-------DFKD 173 (481)
T ss_pred HHHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc----c--cchhhhc-CCCHH-------HHhh
Confidence 99999998763 557899999999999999999999952 22222 1 2333221 22222 232
Q ss_pred -cCcccCCceEEEEEecCCCCCCCcCccEEEEEe---cCCCCCCCCcc-cccccccccce----------eeccCCCcce
Q 003751 406 -NGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIK---FTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITH 470 (798)
Q Consensus 406 -~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~---~~~h~~~gd~~-~g~PTY~fa~~----------VDD~l~gITH 470 (798)
.|. |+. ....+.+..||++|+.. .+.++.|.++| .|+|+||..|+ +|-|..|+.|
T Consensus 174 ~~~~--------~v~--~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg~~~DIH~GG~Dl 243 (481)
T PRK14534 174 MSVS--------RVE--IDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLGGVDH 243 (481)
T ss_pred hccC--------cCC--cccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcCCcceEEeccccc
Confidence 222 222 22346677999999974 45567888999 89999999997 7899999999
Q ss_pred EecCcccccchhhHHHHHHHhCCCCCceeee-eeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHH
Q 003751 471 SLCTLEFETRRASYFWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSI 549 (798)
Q Consensus 471 viRG~E~~~~t~~q~~L~~aLg~~~P~~w~f-~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI 549 (798)
++ .|+.+.+.|.. -+.|...+.+|.+ ++++++|.|||||.|+ +.|++.|...|+.|.++
T Consensus 244 iF---PHHene~Aqs~--a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN---------------~i~l~dll~~~~~~~al 303 (481)
T PRK14534 244 IG---VHHINEIAIAE--CYLNKKWCDMFVHGEFLIMEYEKMSKSNNN---------------FITIKDLEDQGFSPLDF 303 (481)
T ss_pred CC---CcchhHHHHHh--hhcCCCcceEEEEecEEEecCceecccCCC---------------cccHHHHHhcCCChhHH
Confidence 87 78888888863 2247788889987 6899999999999998 57999999999999999
Q ss_pred HHHHHHcCCCCCCccccHhhHHHHHH
Q 003751 550 NAFVQGIGISRSDSLIRLDRLEYHIR 575 (798)
Q Consensus 550 ~~fl~~lG~s~~~~~~~~~~Le~~ir 575 (798)
|-|+++..++.+ ..++++.|+++..
T Consensus 304 R~~lls~~yr~~-l~Fs~e~l~~a~~ 328 (481)
T PRK14534 304 RYFCLTAHYRTQ-LKFTFNNLKACKI 328 (481)
T ss_pred HHHHHhCCCCCC-CCCCHHHHHHHHH
Confidence 999888877655 4688999988863
No 36
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.89 E-value=1.3e-22 Score=230.89 Aligned_cols=251 Identities=17% Similarity=0.211 Sum_probs=193.8
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecC----------Ccc-------------cchHHHHHHHHH
Q 003751 281 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDT----------NPE-------------AEKKEYIDHIEE 332 (798)
Q Consensus 281 aPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDT----------Dp~-------------Re~~e~~~~I~e 332 (798)
.|++++++||||+|+++..+.++| .+...|+.+|+|+ |++ .-...|.+.+.+
T Consensus 30 GpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~~~~~~f~~ 109 (490)
T PRK14536 30 GPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAHYTAAFFR 109 (490)
T ss_pred CCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 799999999999999998888877 4567899999999 643 124578889999
Q ss_pred HHHHcCCCC-CcccCCchhHHHHHHHHHHHHHcCCcccc-----CCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhc
Q 003751 333 IVQWMGWEP-FKITYTSDYFQELYELAVELIRRGHAYVD-----HQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRN 406 (798)
Q Consensus 333 dL~wLGl~p-d~i~yqSd~~~~~ye~a~~LI~~G~AY~C-----~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~ 406 (798)
+++.||+.+ +..++.++|.+.+.+++++|+++|+||.- ||... . +.|... ..+.. ++|..
T Consensus 110 d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~----~--~~YG~L-s~~~~-------~~l~~ 175 (490)
T PRK14536 110 DTARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT----F--PSYGSL-ASAAV-------EDLQA 175 (490)
T ss_pred HHHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc----c--cchhhh-cCCCH-------HHhhc
Confidence 999999986 45689999999999999999999999952 33211 1 233321 22233 23444
Q ss_pred CcccCCceEEEEEecCCCCCCCcCccEEEEEec--CC-CCCCCCcc-cccccccccce----------eeccCCCcceEe
Q 003751 407 GRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKF--TP-HPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSL 472 (798)
Q Consensus 407 G~~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~--~~-h~~~gd~~-~g~PTY~fa~~----------VDD~l~gITHvi 472 (798)
|. |+ +....+.+..||++|+... .. .+.|.++| .|+|+||..|+ +|-|..|+.+++
T Consensus 176 g~--------~v--~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~DliF 245 (490)
T PRK14536 176 GA--------RI--EHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGVDHIR 245 (490)
T ss_pred CC--------cC--CCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHcCCceeEEeccccCCC
Confidence 43 22 2223566779999998753 22 46788999 79999999997 588888888887
Q ss_pred cCcccccchhhHHHHHHHhCCCCCceeee-eeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHH
Q 003751 473 CTLEFETRRASYFWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINA 551 (798)
Q Consensus 473 RG~E~~~~t~~q~~L~~aLg~~~P~~w~f-~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~ 551 (798)
.|+.+...|.. -+.|.+.+.+|.+ ++|+++|.|||||.|+ +.|++.|...|+.|.++|-
T Consensus 246 ---PHHeneiAqs~--a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN---------------~itl~dll~~g~~~~alR~ 305 (490)
T PRK14536 246 ---VHHTNEIAQCE--AATGKPWVRYWLHHEFLLMNKGKMSKSAGQ---------------FLTLSSLQEKGFQPLDYRF 305 (490)
T ss_pred ---cchhhHHHHHH--HhcCCCcceEEEEcCEEeecCccccccCCC---------------cccHHHHHhcCCCHHHHHH
Confidence 78888888752 2247777889987 6899999999999998 5799999999999999999
Q ss_pred HHHHcCCCCCCccccHhhHHHHHHH
Q 003751 552 FVQGIGISRSDSLIRLDRLEYHIRE 576 (798)
Q Consensus 552 fl~~lG~s~~~~~~~~~~Le~~ir~ 576 (798)
|+++..++.+ ..++++.|+++.+.
T Consensus 306 ~lls~~yr~~-l~Fs~e~l~~a~~~ 329 (490)
T PRK14536 306 FLLGGHYRSQ-LAFSWEALKTAKAA 329 (490)
T ss_pred HHHhCCCCCC-CCCCHHHHHHHHHH
Confidence 9998777654 46888888887663
No 37
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.89 E-value=6.4e-23 Score=227.50 Aligned_cols=258 Identities=15% Similarity=0.062 Sum_probs=193.2
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHHcCC-CC
Q 003751 281 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGW-EP 341 (798)
Q Consensus 281 aPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDTDp~-------------Re~~e~~~~I~edL~wLGl-~p 341 (798)
.|+|+|++||||+|+++..++++| .+...|+..+||+|.+ .-...|.+.+.++++.||+ .|
T Consensus 16 GpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~~Lni~~~ 95 (384)
T PRK12418 16 GITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDMEALRVLPP 95 (384)
T ss_pred CCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 799999999999999999888887 3557899999999854 1245788899999999997 67
Q ss_pred CcccCCchhHHHHHHHHHHHHHcCCccccCC----CHH-HHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEE
Q 003751 342 FKITYTSDYFQELYELAVELIRRGHAYVDHQ----TPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 416 (798)
Q Consensus 342 d~i~yqSd~~~~~ye~a~~LI~~G~AY~C~c----s~e-el~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~l 416 (798)
+..+++|++.+.+.+++++|+++|+||.-.. +.. ++.+. +.|... .++..+ +|..|. +.
T Consensus 96 ~~~~raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~--~~YG~l-s~~~~~-------~~~~~~---~~--- 159 (384)
T PRK12418 96 RDYVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDAT--PQFGYE-SGYDRA-------TMLELF---AE--- 159 (384)
T ss_pred CccccCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCch--hhcccc-cCCCHH-------HHHhhh---cc---
Confidence 8889999999999999999999999996432 111 22222 234321 223333 233211 00
Q ss_pred EEEecC-CCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccce----------eeccCCCcceEecCcccccchhhH
Q 003751 417 RMKQDM-QNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASY 484 (798)
Q Consensus 417 R~K~d~-~~~~~~~~D~V~~Ri~~~~h~~~gd~~-~g~PTY~fa~~----------VDD~l~gITHviRG~E~~~~t~~q 484 (798)
|. ++. ...+.+..||++||...+.++.|.++| .|+|+||..|+ +|-|.-|+.+++ .|+.+...|
T Consensus 160 ~~-~~~~~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~F---PHHeneiaq 235 (384)
T PRK12418 160 RG-GDPDRPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIF---PHHEFSAAH 235 (384)
T ss_pred cc-cCcccccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCcccccCcccccc---chhHhHHHH
Confidence 10 011 124566799999999877788999999 89999999996 688888888876 677777666
Q ss_pred HHHHHHhCC-CCCceeee-eeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCC
Q 003751 485 FWLLHALGL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD 562 (798)
Q Consensus 485 ~~L~~aLg~-~~P~~w~f-~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~ 562 (798)
... +.|- +.+.+|.+ ++|+.+|+|||||.+| +.++..+.+.|+.|.++|-||++.+++.+
T Consensus 236 ~~a--~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN---------------~i~~~ell~~G~d~~~lR~~lls~~yr~~- 297 (384)
T PRK12418 236 AEA--ATGERRFARHYVHAGMIGLDGEKMSKSRGN---------------LVFVSRLRAAGVDPAAIRLALLAGHYRAD- 297 (384)
T ss_pred HHH--hcCCCCcceEEEECCEECCCCCcccCcCCC---------------cCCHHHHHhccCChhheeEEEeccCCCCC-
Confidence 532 2454 66789988 6799999999999998 56888888889999999999886666654
Q ss_pred ccccHhhHHHHHHH
Q 003751 563 SLIRLDRLEYHIRE 576 (798)
Q Consensus 563 ~~~~~~~Le~~ir~ 576 (798)
..++.+.|+++.+.
T Consensus 298 l~fs~e~l~~a~~~ 311 (384)
T PRK12418 298 REWTDAVLAEAEAR 311 (384)
T ss_pred cccCHHHHHHHHHH
Confidence 45788888876554
No 38
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.88 E-value=1.8e-22 Score=225.04 Aligned_cols=257 Identities=15% Similarity=0.062 Sum_probs=189.6
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHHcCCC-C
Q 003751 281 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWE-P 341 (798)
Q Consensus 281 aPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDTDp~-------------Re~~e~~~~I~edL~wLGl~-p 341 (798)
.|+|++++||||+|+++..++++| .+...|+..+||+|.+ .-...|.+.+.++++.||+. |
T Consensus 43 GpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~~ 122 (411)
T TIGR03447 43 GITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALRVLPP 122 (411)
T ss_pred CCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 799999999999999999888888 4667899999999854 12457888999999999986 7
Q ss_pred CcccCCchhHHHHHHHHHHHHHcCCccccCC----CHH-HHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEE
Q 003751 342 FKITYTSDYFQELYELAVELIRRGHAYVDHQ----TPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 416 (798)
Q Consensus 342 d~i~yqSd~~~~~ye~a~~LI~~G~AY~C~c----s~e-el~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~l 416 (798)
+..+++|++.+.+.+++++|+++|+||.-.. +.. ++.+. +.|... .++..+ +|..+. +.
T Consensus 123 d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~--~~YG~L-s~~~~~-------~~~~~~---~~--- 186 (411)
T TIGR03447 123 RDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEAT--EQFGYE-SGYDRA-------TMLELF---AE--- 186 (411)
T ss_pred CcccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccch--hccccc-cCCCHH-------HHHhhh---cc---
Confidence 8889999999999999999999999996432 111 22222 234322 223333 232210 00
Q ss_pred E-EEecCCCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccce----------eeccCCCcceEecCcccccchhhH
Q 003751 417 R-MKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASY 484 (798)
Q Consensus 417 R-~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~-~g~PTY~fa~~----------VDD~l~gITHviRG~E~~~~t~~q 484 (798)
| ...+ ...+.+..||++|+.....++.|.++| .|+|+||..|+ +|-|.-|+.+++ .|+.+.-.|
T Consensus 187 ~~~~~~-~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~Dih~GG~DLif---pHheneiaq 262 (411)
T TIGR03447 187 RGGDPD-RPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQGGGSDLIF---PHHEFSAAH 262 (411)
T ss_pred cccCcc-cccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCceecccCcccccc---cchHhHHHH
Confidence 1 1111 124566799999999877788999999 89999999996 566666666665 455555555
Q ss_pred HHHHHHhCC-CCCceeee-eeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCC
Q 003751 485 FWLLHALGL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD 562 (798)
Q Consensus 485 ~~L~~aLg~-~~P~~w~f-~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~ 562 (798)
..- +.|- +.+.+|.+ ++|+.+|+||||+.+| +.+++.+.+.|+.|.++|-|+++.+++.+
T Consensus 263 ~~A--~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN---------------~i~~~dl~~~g~dp~~lRl~lls~~Yr~p- 324 (411)
T TIGR03447 263 AEA--ATGVRRMARHYVHAGMIGLDGEKMSKSLGN---------------LVFVSKLRAAGVDPAAIRLGLLAGHYRQD- 324 (411)
T ss_pred HHH--hcCCCCcceEEEECCEECcCCCCccCcCCC---------------CCCHHHHHhcCCCcccEEEEEecCCCCCC-
Confidence 421 2455 67889988 6899999999999998 57899999899999999999987777654
Q ss_pred ccccHhhHHHHHH
Q 003751 563 SLIRLDRLEYHIR 575 (798)
Q Consensus 563 ~~~~~~~Le~~ir 575 (798)
..++.+.|+++.+
T Consensus 325 l~fs~e~l~~a~~ 337 (411)
T TIGR03447 325 RDWTDAVLAEAEA 337 (411)
T ss_pred CccCHHHHHHHHH
Confidence 4577777777643
No 39
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.87 E-value=1.3e-21 Score=226.88 Aligned_cols=249 Identities=15% Similarity=0.164 Sum_probs=192.0
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCccc-------------chHHHHHHHHHHHHHcCCCCC
Q 003751 281 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPEA-------------EKKEYIDHIEEIVQWMGWEPF 342 (798)
Q Consensus 281 aPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDTDp~R-------------e~~e~~~~I~edL~wLGl~pd 342 (798)
.|+|++++||||+|++++.++++| .+...|+..+||+|.+- -...|.+.+.++++.||+.++
T Consensus 255 GPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d~~~LnI~~p 334 (699)
T PRK14535 255 GMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADALGVLRP 334 (699)
T ss_pred CCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 789999999999999999888887 45678999999999541 246789999999999999876
Q ss_pred c-ccCCchhHHHHHHHHHHHHHcCCcccc------CCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceE
Q 003751 343 K-ITYTSDYFQELYELAVELIRRGHAYVD------HQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 415 (798)
Q Consensus 343 ~-i~yqSd~~~~~ye~a~~LI~~G~AY~C------~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~ 415 (798)
. .+..|+|.+.+.+++++|+++|+||.- ||.. .. +.|... .++.. ++|+.|.
T Consensus 335 ~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~----~f--~~YG~L-S~~~~-------~~l~~g~------- 393 (699)
T PRK14535 335 DIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVR----EF--AAYGQL-SGKSL-------DDLRAGE------- 393 (699)
T ss_pred cEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecc----cc--cccccc-cCCCh-------HHhcCCC-------
Confidence 4 678899999999999999999999952 3322 11 234322 12222 3454443
Q ss_pred EEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccce----------eeccCCCcceEecCcccccchhhH
Q 003751 416 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASY 484 (798)
Q Consensus 416 lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~-~g~PTY~fa~~----------VDD~l~gITHviRG~E~~~~t~~q 484 (798)
|+..+ ..+.+..||++|+.....+|.|.++| .|+|+||..|+ +|-|.-|+.|++ .|+.|...|
T Consensus 394 -rve~d--~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLiF---PHHENEiAQ 467 (699)
T PRK14535 394 -RVEVD--GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF---PHHENEIAQ 467 (699)
T ss_pred -ccccc--cccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccCC---CCCccHHHH
Confidence 33222 34667799999999887788899999 89999999996 788999999988 788888888
Q ss_pred HHHHHHhCC----------------CCCceeee-eeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChH
Q 003751 485 FWLLHALGL----------------YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTST 547 (798)
Q Consensus 485 ~~L~~aLg~----------------~~P~~w~f-~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~Pe 547 (798)
..- +.|. +...||.| +++.++|.|||||.|+ +.|++.+.+. |.|+
T Consensus 468 seA--~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN---------------~it~~dlLe~-ygpd 529 (699)
T PRK14535 468 SVG--ATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGN---------------FFTIREVLKQ-YDPE 529 (699)
T ss_pred HHH--hhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCC---------------cCCHHHHHHh-CCHH
Confidence 532 2243 23568877 7899999999999998 5789998885 9999
Q ss_pred HHHHHHHHcCCCCCCccccHhhHHHHHH
Q 003751 548 SINAFVQGIGISRSDSLIRLDRLEYHIR 575 (798)
Q Consensus 548 AI~~fl~~lG~s~~~~~~~~~~Le~~ir 575 (798)
++|-|+++.++..+ ..++.+.|+++.+
T Consensus 530 alRl~lLsshYRsp-L~fS~e~Le~Ak~ 556 (699)
T PRK14535 530 VVRFFILRAHYRSP-LNYSDAHLDDAKG 556 (699)
T ss_pred HHHHHHHcCCCCCC-CCcCHHHHHHHHH
Confidence 99999998666544 4577778877653
No 40
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.84 E-value=1.2e-20 Score=222.27 Aligned_cols=267 Identities=13% Similarity=0.167 Sum_probs=190.7
Q ss_pred CeeEEEe--CCCCCCcCchhHHHHHHHHHHHHH------HcCCEEEEEeecCCccc--------------chHHHHHHHH
Q 003751 274 GNVLTRF--PPEPNGYLHIGHAKAMFVDFGLAK------ERGGYCYLRYDDTNPEA--------------EKKEYIDHIE 331 (798)
Q Consensus 274 g~v~tRF--aPsPtG~LHIGharaal~n~l~Ar------~~~G~~iLRidDTDp~R--------------e~~e~~~~I~ 331 (798)
+..|+-| .|+++++.||||||++++.++++| .|...|+.+|+|+|.+- -...|.+.+.
T Consensus 58 ~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~ 137 (651)
T PTZ00399 58 GRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFF 137 (651)
T ss_pred CCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3334445 688889999999999998887776 34568999999999541 1347889999
Q ss_pred HHHHHcCCCC-CcccCCchhHHHHHHHHHHHHHcCCccccCCCHH-HHHHHhc--cCCCCCCCCCChHHHHHHHHHhhcC
Q 003751 332 EIVQWMGWEP-FKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYRE--KKMNSPWRDRPIAESLKLFEDMRNG 407 (798)
Q Consensus 332 edL~wLGl~p-d~i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~e-el~~~r~--~~y~~~~R~~s~ee~l~~f~~m~~G 407 (798)
++++.||+.+ +-+++.|+|++.+.+++++|+++|+||.-..+.. ++..++. ..|. .++++. ......|..|
T Consensus 138 ~d~~~Lni~~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~~~~Yg----~L~p~~-~~~~~~~~~g 212 (651)
T PTZ00399 138 EDMKALNVRPPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYP----KLEPES-VADEDRIAEG 212 (651)
T ss_pred HHHHHcCCCCCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhcccchhhHH----hhChhh-cCCHHHHhcc
Confidence 9999999986 5688999999999999999999999996432221 2222211 1222 122210 0011223333
Q ss_pred cccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccce----------eeccCCCcceEecCcc
Q 003751 408 RIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLE 476 (798)
Q Consensus 408 ~~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~-~g~PTY~fa~~----------VDD~l~gITHviRG~E 476 (798)
. | . +. +......+..||++|+...+.+|.|.++| .|.|+||..|+ +|=|-.||.+++ .
T Consensus 213 ~---~--~--l~-~~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~DL~F---P 281 (651)
T PTZ00399 213 E---G--A--LG-KVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGIDLKF---P 281 (651)
T ss_pred c---C--C--cc-ccCcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCCCCCC---C
Confidence 2 1 0 11 11123555699999999988889999999 79999999885 577777777766 6
Q ss_pred cccchhhHHHHHHHhCC-CCCceeee-eeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHH
Q 003751 477 FETRRASYFWLLHALGL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQ 554 (798)
Q Consensus 477 ~~~~t~~q~~L~~aLg~-~~P~~w~f-~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~ 554 (798)
|+.|.-.|.-- +.|- +.+.+|.| +||+++|.|||||.|+ +.|++.+... |.|.++|-|++
T Consensus 282 HHeNEiAQseA--~~~~~~~v~y~~H~G~L~i~G~KMSKSLGN---------------fItp~dlLek-ygaDaLR~~lL 343 (651)
T PTZ00399 282 HHDNELAQSEA--YFDKHQWVNYFLHSGHLHIKGLKMSKSLKN---------------FITIRQALSK-YTARQIRLLFL 343 (651)
T ss_pred cchhHHHHHHH--hhCCCCCCcEEEEEEEEEeccchhhhcCCC---------------cccHHHHHHH-cChHHHHHHHH
Confidence 77777766432 2343 55789988 9999999999999998 5788898887 99999999998
Q ss_pred HcCCCCCCccccHhhHHHHHH
Q 003751 555 GIGISRSDSLIRLDRLEYHIR 575 (798)
Q Consensus 555 ~lG~s~~~~~~~~~~Le~~ir 575 (798)
..++.. +..++++.|.++..
T Consensus 344 s~~~~~-dldFS~e~l~~a~~ 363 (651)
T PTZ00399 344 LHKWDK-PMNYSDESMDEAIE 363 (651)
T ss_pred hcCCCC-CCccCHHHHHHHHH
Confidence 766654 44688888776654
No 41
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=4.7e-20 Score=203.94 Aligned_cols=262 Identities=14% Similarity=0.134 Sum_probs=187.7
Q ss_pred CcHHHHHHhhhhcCCeeEEEe--CCCCCCcCchhHHHHHHHHHHHHH------HcCCEEEEEeecCCcc-----c-----
Q 003751 260 NTKEVLDKHLEVTGGNVLTRF--PPEPNGYLHIGHAKAMFVDFGLAK------ERGGYCYLRYDDTNPE-----A----- 321 (798)
Q Consensus 260 ~~~~~~~~hl~~~~g~v~tRF--aPsPtG~LHIGharaal~n~l~Ar------~~~G~~iLRidDTDp~-----R----- 321 (798)
||.-..++-+.-..|+-+|.| .|+.+..-||||||+++--.++-| .|+..|+++|+|+|.+ |
T Consensus 39 NslTr~Ke~fip~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~ 118 (586)
T KOG2007|consen 39 NSLTRQKEVFIPNNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMG 118 (586)
T ss_pred eccccccceeeeCCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhc
Confidence 555444444444455557888 556667799999999986555555 5788999999999954 2
Q ss_pred ch--------HHHHHHHHHHHHHcCCCC-CcccCCchhHHHHHHHHHHHHHcCCccccCCCHH-HHHHHhccCCCCCCCC
Q 003751 322 EK--------KEYIDHIEEIVQWMGWEP-FKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYREKKMNSPWRD 391 (798)
Q Consensus 322 e~--------~e~~~~I~edL~wLGl~p-d~i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~e-el~~~r~~~y~~~~R~ 391 (798)
+. .-|++.+.+|+..|.+.| +-.++-|+|++++..+++++|++|.||+-..+.. ++.+ ++..|..
T Consensus 119 e~~~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~k-----f~~~YgK 193 (586)
T KOG2007|consen 119 EKPLSLSERFCYYEEEFLQDMAALNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDK-----FPHSYGK 193 (586)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccc-----ccchhhh
Confidence 11 136688999999999875 5789999999999999999999999998754432 2221 1211222
Q ss_pred CChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccce----------
Q 003751 392 RPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC---------- 460 (798)
Q Consensus 392 ~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~-~g~PTY~fa~~---------- 460 (798)
+.-+ .+.+..| +|+.+ .+.+.+..||++|+.+.+..|.|.++| .|.|+||..|+
T Consensus 194 L~G~-----~~~~~~g---Eg~l~-------ds~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~ 258 (586)
T KOG2007|consen 194 LVGQ-----RKNLQEG---EGVLS-------DSRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQ 258 (586)
T ss_pred hcCc-----hhhcccC---cCccc-------cccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhccc
Confidence 2210 0223333 23332 145666799999999999999999999 89999999997
Q ss_pred eeccCCCcceEecCcccccchhhHHHHHHHhCCC-CCceeee-eeecCCCeeeeccccccccccCccCCCCCcchhhHHH
Q 003751 461 IVDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAG 538 (798)
Q Consensus 461 VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~-~P~~w~f-~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~ 538 (798)
+|-|-.||...+ .|+.|...|-- -++.-. -..||-| |||++.|.||||+..| +.||+.
T Consensus 259 lDIH~GG~DL~F---PHHeNEiAQ~e--A~~~~~~wVnYflHtGhL~i~g~KMSKSLkN---------------FiTIke 318 (586)
T KOG2007|consen 259 LDIHGGGIDLAF---PHHENEIAQSE--AAFDDSQWVNYFLHTGHLTINGEKMSKSLKN---------------FITIKE 318 (586)
T ss_pred cceecCcccccC---CCcccHHHHHH--HHhcCCccceeEEEcCeeeeccchhhhhhcc---------------ceeHHH
Confidence 466666666555 56666666632 122222 2467766 8999999999999998 689999
Q ss_pred HHHCCCChHHHHHHHHHcCCCCCC
Q 003751 539 LRRRGVTSTSINAFVQGIGISRSD 562 (798)
Q Consensus 539 lrrrG~~PeAI~~fl~~lG~s~~~ 562 (798)
+... |+|.++|-||+...|..+-
T Consensus 319 ~Lk~-~sp~qLRl~fl~~~wr~~l 341 (586)
T KOG2007|consen 319 ALKK-YSPRQLRLAFLLHQWRSPL 341 (586)
T ss_pred HHHh-cCHHHHHHHHHHHHhcCcC
Confidence 8876 9999999999998887553
No 42
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.73 E-value=2e-17 Score=170.61 Aligned_cols=184 Identities=18% Similarity=0.127 Sum_probs=139.7
Q ss_pred eEEEe-CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCcc------------cchHHHHHHHHHHHHHc
Q 003751 276 VLTRF-PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE------------AEKKEYIDHIEEIVQWM 337 (798)
Q Consensus 276 v~tRF-aPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDTDp~------------Re~~e~~~~I~edL~wL 337 (798)
|+.=| +|+|||+|||||+|++++...+|| .+...+.--++|.+.+ .....+.+.+.+++++|
T Consensus 2 v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L 81 (212)
T cd00671 2 ILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRL 81 (212)
T ss_pred eEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445 899999999999999998877777 3444555555566532 22456788889999999
Q ss_pred CCCCCcccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEE
Q 003751 338 GWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLR 417 (798)
Q Consensus 338 Gl~pd~i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR 417 (798)
|+.+|...+.|++...+.+.++.|+++|.+|.-. |..++.
T Consensus 82 ~i~~d~~~~es~~~~~~~~~i~~L~~~g~~~~~~----------------------------------------g~~~~~ 121 (212)
T cd00671 82 DVRFDVWFGESSYLGLMGKVVELLEELGLLYEED----------------------------------------GALWLD 121 (212)
T ss_pred CCcCceecchhhhhhHHHHHHHHHHHCCCEEEeC----------------------------------------CcEEEe
Confidence 9999988899998888889999999999998421 001111
Q ss_pred EEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccc---ccceeeccCCCcceE--ecCcccccchhhHHHHHHHhC
Q 003751 418 MKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD---YAHCIVDSIENITHS--LCTLEFETRRASYFWLLHALG 492 (798)
Q Consensus 418 ~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~---fa~~VDD~l~gITHv--iRG~E~~~~t~~q~~L~~aLg 492 (798)
+. .-....|+|+-|. +| .|||+ +|+.++++.+++||+ |+|.|+..+.++|.+++++||
T Consensus 122 ~~-----~~~~~~d~vl~rs-------dG-----~~~Y~~~DlA~~~~~~~~~~~~~i~v~g~~~~~~~~~~~~~~~~lg 184 (212)
T cd00671 122 LT-----EFGDDKDRVLVRS-------DG-----TYTYFTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLFAALELLG 184 (212)
T ss_pred ch-----hhCCCCCeEEEEC-------CC-----CccchHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHHHHHHcC
Confidence 10 0011257888776 44 78998 799999999999999 999999999999999999999
Q ss_pred CC-CCceeee--eeecCC-Ceeeecccc
Q 003751 493 LY-QPYVWEY--SRLNVS-NTVMSKRKL 516 (798)
Q Consensus 493 ~~-~P~~w~f--~~Ln~~-g~KLSKR~~ 516 (798)
+. .|.+.|. +.+... |.|||||+|
T Consensus 185 ~~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 185 YDEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred CCCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 86 5655554 566554 999999985
No 43
>PF04557 tRNA_synt_1c_R2: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 ; InterPro: IPR007638 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a region found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This region is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004819 glutamine-tRNA ligase activity, 0005524 ATP binding, 0006425 glutaminyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=99.59 E-value=2.8e-16 Score=139.51 Aligned_cols=82 Identities=38% Similarity=0.472 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHhcCCCchhhhhhhhhhhhhhhccCCCc--chhhccccCCCCCCCCccccCCCCCCCCCCCCccccccc
Q 003751 170 IVKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPE--KDEDKKFANDAPVQLPEEDLFPISNFPPPEENYKQVHTE 247 (798)
Q Consensus 170 ~~k~~~d~~~l~lLgpK~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~n~~~~~~~ 247 (798)
+||++||+||++||||||++|+++++|++.++.++.... ..........+.+||++|||+. ++||+||||+ +
T Consensus 1 avK~evD~qil~LLGPKteaD~~k~~K~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~-~~fHkPGEN~-k---- 74 (84)
T PF04557_consen 1 AVKNEVDAQILELLGPKTEADLVKKKKKKKKKKKKAKKKKKEAKANAEEESERAMFEEGFLGD-LHFHKPGENY-K---- 74 (84)
T ss_dssp -HHHHHHHHHHHHH-S--GGG-----------------------------------------------------------
T ss_pred CcHHHHHHHHHHHhCCCccccccCCCCCCCCCcccccccccccccccCCCCCccchhhhhhcc-cCCCCccccC-C----
Confidence 589999999999999999999998866643321110001 1111112345678999999997 7899999996 3
Q ss_pred cccCCCccccccCcHHHHHHh
Q 003751 248 IPFSDGSVLICCNTKEVLDKH 268 (798)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~h 268 (798)
+||+.+|.+|
T Consensus 75 -----------pqt~~~L~~h 84 (84)
T PF04557_consen 75 -----------PQTMPLLKKH 84 (84)
T ss_dssp ---------------------
T ss_pred -----------cchHHHHhcC
Confidence 4678888776
No 44
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.55 E-value=9.2e-14 Score=160.38 Aligned_cols=271 Identities=19% Similarity=0.109 Sum_probs=159.4
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHHc
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWM 337 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~-----~~G~~iLRidDTDp~-------------Re~~e~~~~I~edL~wL 337 (798)
++|==+|+|||.+||||+|+.+..+.++|. +...|+.-+||.+.. .....+.+.|.++|+.|
T Consensus 4 ~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 83 (511)
T PRK11893 4 YITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEAL 83 (511)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 345558999999999999999999888883 455788888988742 23457889999999999
Q ss_pred CCCCCcccCCch--hHHHHHHHHHHHHHcCCccc----------c--CCCHHHHHHHhccC-CCCCCCCCChH----HH-
Q 003751 338 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV----------D--HQTPEEIKEYREKK-MNSPWRDRPIA----ES- 397 (798)
Q Consensus 338 Gl~pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~----------C--~cs~eel~~~r~~~-y~~~~R~~s~e----e~- 397 (798)
|+.+|..++.++ |.+...+...+|.++|++|. | +++..++.. ++ +...|.. +++ ++
T Consensus 84 ~I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~---~~p~~~~~~~-~~~~~~~~~~ 159 (511)
T PRK11893 84 NISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIE---DGYRCPPTGA-PVEWVEEESY 159 (511)
T ss_pred CCCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcC---CCCCCCCCCC-cceEEecCeE
Confidence 999987655555 88888889999999999886 2 334444432 11 0001111 000 00
Q ss_pred ---HHHHHHhhcCcccCCceEEEEEecC------CCCCCCcCccEEEE-EecCCCCCCCC------cc----------cc
Q 003751 398 ---LKLFEDMRNGRIEEGKATLRMKQDM------QNDNFNMYDLIAYR-IKFTPHPHAGD------KW----------CI 451 (798)
Q Consensus 398 ---l~~f~~m~~G~~~~g~~~lR~K~d~------~~~~~~~~D~V~~R-i~~~~h~~~gd------~~----------~g 451 (798)
+..|.+.....+..+.. +...+. .--.....|+.+.| -..=+.|..++ -| .+
T Consensus 160 f~~l~~~~~~l~~~~~~~~~--~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~ 237 (511)
T PRK11893 160 FFRLSKYQDKLLELYEANPD--FIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALG 237 (511)
T ss_pred EEEcHHHHHHHHHHHHhCCC--ccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhc
Confidence 01111100000000000 000000 00011246777777 22212222222 24 12
Q ss_pred ccc----------ccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCCceee-eeeecCCCeeeecccccccc
Q 003751 452 YPS----------YDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWE-YSRLNVSNTVMSKRKLNFLV 520 (798)
Q Consensus 452 ~PT----------Y~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~w~-f~~Ln~~g~KLSKR~~~~lv 520 (798)
+|. +.+ +.|-|.+|+.++. .+......+..+++...|..|. ++++..+|.|||||+|+
T Consensus 238 ~p~~~~~~~~~~~~~~--~~D~~~~G~D~~~------~h~~~~~a~~~a~~~~~p~~~~~~g~v~~~G~KMSKS~GN--- 306 (511)
T PRK11893 238 YPDDEELLAELFNKYW--PADVHLIGKDILR------FHAVYWPAFLMAAGLPLPKRVFAHGFLTLDGEKMSKSLGN--- 306 (511)
T ss_pred cccccccchhHHHhcC--CCcceEecccccc------cchhHHHHHHHhCCCCCCCEEEeeccEEECCeeecccCCc---
Confidence 221 111 1233444444432 1222233444566777786664 58888899999999998
Q ss_pred ccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHH
Q 003751 521 TNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 576 (798)
Q Consensus 521 ~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~ 576 (798)
..++..+.+. +.+.++|-|++..+....+..++++.+.+..+.
T Consensus 307 ------------~i~~~dll~~-~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~ 349 (511)
T PRK11893 307 ------------VIDPFDLVDE-YGVDAVRYFLLREIPFGQDGDFSREAFINRINA 349 (511)
T ss_pred ------------EEcHHHHHHH-cCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHH
Confidence 3577777776 899999999998865455667888888665544
No 45
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.54 E-value=3.7e-14 Score=164.06 Aligned_cols=225 Identities=20% Similarity=0.196 Sum_probs=149.4
Q ss_pred CCeeEEEe-CCCCCCcCchhHHHHHHHHHHHHHH--cCC---EEEEEeecCCc-------------ccchHHHHHHHHHH
Q 003751 273 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAKE--RGG---YCYLRYDDTNP-------------EAEKKEYIDHIEEI 333 (798)
Q Consensus 273 ~g~v~tRF-aPsPtG~LHIGharaal~n~l~Ar~--~~G---~~iLRidDTDp-------------~Re~~e~~~~I~ed 333 (798)
+++|+.-| +|+|||+|||||+|++++.+.+||. +.| .++.-++|.+. .+..+.+.+.|.++
T Consensus 110 ~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (507)
T PRK01611 110 GKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKED 189 (507)
T ss_pred CCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888 9999999999999999999988883 445 45555688873 23466888999999
Q ss_pred HHHcCCCCCcccCCchhH--HHHHHHHHHHHHcCCcc-ccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCccc
Q 003751 334 VQWMGWEPFKITYTSDYF--QELYELAVELIRRGHAY-VDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIE 410 (798)
Q Consensus 334 L~wLGl~pd~i~yqSd~~--~~~ye~a~~LI~~G~AY-~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~ 410 (798)
+++||+.+|...+.|+.+ ..+.+..+.|.++|.+| .- +
T Consensus 190 l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~---------------~------------------------ 230 (507)
T PRK01611 190 LDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVES---------------D------------------------ 230 (507)
T ss_pred HHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEee---------------C------------------------
Confidence 999999998766656543 35677788999999998 21 0
Q ss_pred CCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccc---ccceeeccCCCcceE--ecCcccccchhhHH
Q 003751 411 EGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD---YAHCIVDSIENITHS--LCTLEFETRRASYF 485 (798)
Q Consensus 411 ~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~---fa~~VDD~l~gITHv--iRG~E~~~~t~~q~ 485 (798)
|..++++. ..+. -.|+|+.|. +| .|||. +|..++-+.. .+++ |.|.++..+-++..
T Consensus 231 -Ga~~~~~~---~~~~--~~~~vl~ks-------dG-----~~~Y~t~Dia~~~~k~~~-~d~~i~V~g~~q~~hf~~~~ 291 (507)
T PRK01611 231 -GALWVRLT---EFGD--DKDRVLIKS-------DG-----TYTYFTRDIAYHLYKFER-FDRVIYVVGADHHGHFKRLK 291 (507)
T ss_pred -CcEEEEch---hhCC--CCCeEEEEC-------CC-----CccchHHHHHHHHHHHhh-cCEEEEEECCChHHHHHHHH
Confidence 11111110 0000 036788876 34 45554 3333222211 3444 78999999999999
Q ss_pred HHHHHhCCCCC--ceeee---ee-ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCCh-------------
Q 003751 486 WLLHALGLYQP--YVWEY---SR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTS------------- 546 (798)
Q Consensus 486 ~L~~aLg~~~P--~~w~f---~~-Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~P------------- 546 (798)
.+.++||+..+ ..+.| ++ ++.+|.|||||+|+ ..++..|.++++..
T Consensus 292 ~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn---------------~i~l~dll~~a~g~~~~~~~~~~~a~~ 356 (507)
T PRK01611 292 AALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGN---------------VVTLDDLLDEAVGRARELIEEKEIAEA 356 (507)
T ss_pred HHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCc---------------eeEHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999998644 22333 44 46688999999998 35788888775555
Q ss_pred ---HHHHHHHHHcCCCCCCccccHhhHH
Q 003751 547 ---TSINAFVQGIGISRSDSLIRLDRLE 571 (798)
Q Consensus 547 ---eAI~~fl~~lG~s~~~~~~~~~~Le 571 (798)
.|++-|++... ...+..++|+.+.
T Consensus 357 vgidAiR~~~L~~~-~~~~~~Fd~~~~~ 383 (507)
T PRK01611 357 VGIDAVRYFDLSRS-RDKDLDFDLDLAL 383 (507)
T ss_pred hccceeEehhhhcC-CCCCCccCHHHHH
Confidence 56665555442 2223356665543
No 46
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.40 E-value=1.9e-13 Score=132.30 Aligned_cols=133 Identities=21% Similarity=0.158 Sum_probs=101.5
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHHc-----CCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCcccCCchhH
Q 003751 277 LTRFPPEPNGYLHIGHAKAMFVDFGLAKER-----GGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYF 351 (798)
Q Consensus 277 ~tRFaPsPtG~LHIGharaal~n~l~Ar~~-----~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~i~yqSd~~ 351 (798)
++.++|+|||++||||+|.+++.+.+||.+ +..++..+||.+.....+....
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~----------------------- 57 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK----------------------- 57 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc-----------------------
Confidence 367899999999999999999999998865 8899999999997665444322
Q ss_pred HHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCCcCc
Q 003751 352 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 431 (798)
Q Consensus 352 ~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D 431 (798)
.++.+++.. .+...|.+...
T Consensus 58 -------------------~~~~~~~~~----------------~~~~~~~~~~~------------------------- 77 (143)
T cd00802 58 -------------------GENAKAFVE----------------RWIERIKEDVE------------------------- 77 (143)
T ss_pred -------------------CCCHHHHHH----------------HHHHHHHHHHH-------------------------
Confidence 112222211 11111211100
Q ss_pred cEEEEEecCCCCCCCCcccccccccccceeeccCCCc---ceEecCcccccchhhHHHHHHHhCCC-CCceeeeeeecC-
Q 003751 432 LIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENI---THSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNV- 506 (798)
Q Consensus 432 ~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gI---THviRG~E~~~~t~~q~~L~~aLg~~-~P~~w~f~~Ln~- 506 (798)
|++.|++|+...++ ||.++|.|+..|...+.++++++|.. .|...+|+++..
T Consensus 78 -----------------------y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~ 134 (143)
T cd00802 78 -----------------------YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGA 134 (143)
T ss_pred -----------------------HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECC
Confidence 99999999999999 99999999999999999999999875 577778898866
Q ss_pred CCeeeeccc
Q 003751 507 SNTVMSKRK 515 (798)
Q Consensus 507 ~g~KLSKR~ 515 (798)
+|.|||||+
T Consensus 135 ~g~KmSks~ 143 (143)
T cd00802 135 DGTKMSKSK 143 (143)
T ss_pred CCCcCCCCC
Confidence 559999985
No 47
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.38 E-value=1e-11 Score=135.19 Aligned_cols=242 Identities=19% Similarity=0.170 Sum_probs=136.8
Q ss_pred EeCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCcc------c--------------------chHHHH
Q 003751 279 RFPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE------A--------------------EKKEYI 327 (798)
Q Consensus 279 RFaPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDTDp~------R--------------------e~~e~~ 327 (798)
==+|+|||.+||||+++.++.+.++| .+...|+.-+|+.+.+ + -..++.
T Consensus 6 ~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
T cd00668 6 TPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMS 85 (312)
T ss_pred cCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHH
Confidence 34899999999999999888777777 3445677777665521 1 124678
Q ss_pred HHHHHHHHHcCCCCC--c--ccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHH
Q 003751 328 DHIEEIVQWMGWEPF--K--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFED 403 (798)
Q Consensus 328 ~~I~edL~wLGl~pd--~--i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~ 403 (798)
+.|.++|+.||+..| . .+...+|.+...+...+|.++|++|.-.-.. +.. ..-+-..+ +-.-++.+.
T Consensus 86 ~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v------~~~--~~~f~~~~-~l~~~~~~~ 156 (312)
T cd00668 86 GEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV------RIT--EQWFFDMP-KFKEKLLKA 156 (312)
T ss_pred HHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee------Eee--eeEEEEcH-HHHHHHHHH
Confidence 889999999999765 4 3445567777788889999999999733111 000 00000000 000011122
Q ss_pred hhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccceeeccC---------C--------
Q 003751 404 MRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSI---------E-------- 466 (798)
Q Consensus 404 m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l---------~-------- 466 (798)
+..+...+. ++|.....--....|+.+.|-.. || .+.|++++-|=.|-++ .
T Consensus 157 ~~~~~~~p~----~~~~~~~~~l~~~~d~~isR~~~-----WG---~~~P~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~ 224 (312)
T cd00668 157 LRRGKIVPE----HVKNRMEAWLESLLDWAISRQRY-----WG---TPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKDS 224 (312)
T ss_pred HhcCCcCCh----HHHHHHHHHHhCCCCeEEeccCC-----CC---CcCCcccccchhhccHHHHHHcCCCccchhhhhc
Confidence 222210000 00000000000113777766421 22 3455566555111110 0
Q ss_pred -CcceEecCcccc-cchhhHHHHHHHhCCC--CCceeeeeeecCCC-eeeeccccccccccCccCCCCCcchhhHHHHHH
Q 003751 467 -NITHSLCTLEFE-TRRASYFWLLHALGLY--QPYVWEYSRLNVSN-TVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRR 541 (798)
Q Consensus 467 -gITHviRG~E~~-~~t~~q~~L~~aLg~~--~P~~w~f~~Ln~~g-~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrr 541 (798)
..+--+=|.|.. .+.........+++.+ ...+|.+++++.+| .|||||+++ ..++..+.+
T Consensus 225 ~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn---------------~v~~~d~~~ 289 (312)
T cd00668 225 YPADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGN---------------VIDPSDVVE 289 (312)
T ss_pred CCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCC---------------cCCHHHHHH
Confidence 122122255554 4444444445566643 33567778888777 999999998 457888887
Q ss_pred CCCChHHHHHHHHHcC
Q 003751 542 RGVTSTSINAFVQGIG 557 (798)
Q Consensus 542 rG~~PeAI~~fl~~lG 557 (798)
. +.|+|+|-|++..+
T Consensus 290 ~-~~~da~R~~l~~~~ 304 (312)
T cd00668 290 K-YGADALRYYLTSLA 304 (312)
T ss_pred H-cCcHHHHHHHHhcC
Confidence 7 99999999998765
No 48
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.29 E-value=1.2e-10 Score=127.47 Aligned_cols=94 Identities=17% Similarity=0.201 Sum_probs=74.1
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHHc
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWM 337 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~-----~~G~~iLRidDTDp~-------------Re~~e~~~~I~edL~wL 337 (798)
++|==+|.|||.+||||+++.++.+.++|. +...++..+||.+.+ .-...+.+.|.+++++|
T Consensus 3 ~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 82 (319)
T cd00814 3 LITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWL 82 (319)
T ss_pred EEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 345557999999999999999998988883 345677778887632 23567889999999999
Q ss_pred CCCCCcccCCch--hHHHHHHHHHHHHHcCCccc
Q 003751 338 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 338 Gl~pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~ 369 (798)
|+.+|..++.++ +.....+..++|.++|.+|.
T Consensus 83 gI~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~ 116 (319)
T cd00814 83 NISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYE 116 (319)
T ss_pred CCcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 999987555544 66667788899999999985
No 49
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.24 E-value=1.5e-10 Score=134.80 Aligned_cols=94 Identities=18% Similarity=0.211 Sum_probs=75.2
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--c---CCEEEEEeecCCcc-------------cchHHHHHHHHHHHHHc
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--R---GGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWM 337 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~---~G~~iLRidDTDp~-------------Re~~e~~~~I~edL~wL 337 (798)
++|--+|+|||.+||||+++.+..+.+||. . ...|+.-+||.+.+ .....+.+.|.+++++|
T Consensus 2 ~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 81 (530)
T TIGR00398 2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWL 81 (530)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 567789999999999999999999998873 3 34577777776532 23567889999999999
Q ss_pred CCCCCcccCCch--hHHHHHHHHHHHHHcCCccc
Q 003751 338 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 338 Gl~pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~ 369 (798)
|+.+|..++.++ |.....+..++|.++|++|.
T Consensus 82 gI~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~ 115 (530)
T TIGR00398 82 NISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYE 115 (530)
T ss_pred CCCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999986554444 77778888999999999883
No 50
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.19 E-value=7.1e-11 Score=122.48 Aligned_cols=78 Identities=12% Similarity=0.056 Sum_probs=53.7
Q ss_pred eeccCCCcceEecCcccccchhhHHHHHHH-hCCCCCceeee-eeecCCCeeeeccccccccccCccCCCCCcchhhHHH
Q 003751 461 IVDSIENITHSLCTLEFETRRASYFWLLHA-LGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAG 538 (798)
Q Consensus 461 VDD~l~gITHviRG~E~~~~t~~q~~L~~a-Lg~~~P~~w~f-~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~ 538 (798)
+|=|..|++|+. .|+.+...|. .+ .|-+.+.+|.+ +.++.+|.|||||+|+ ..++..
T Consensus 129 ~dih~~G~Dl~f---pH~~~~~a~~---~a~~g~~~~~~~~h~~~v~~~g~KMSKs~Gn---------------~v~~~d 187 (213)
T cd00672 129 FDIHGGGVDLIF---PHHENEIAQS---EAATGKPFARYWLHTGHLTIDGEKMSKSLGN---------------FITVRD 187 (213)
T ss_pred ccEEeecCCCCc---ChHHHHHHHH---HHHhCCCCCcEEEEEEEEeccCcchhhcCCC---------------ccCHHH
Confidence 344445566654 3444444332 23 24455778876 5789999999999997 468888
Q ss_pred HHHCCCChHHHHHHHHHcCCCC
Q 003751 539 LRRRGVTSTSINAFVQGIGISR 560 (798)
Q Consensus 539 lrrrG~~PeAI~~fl~~lG~s~ 560 (798)
+.+. +.|.++|-|++...+..
T Consensus 188 ll~~-~~~da~R~~~l~~~~~~ 208 (213)
T cd00672 188 ALKK-YDPEVLRLALLSSHYRS 208 (213)
T ss_pred HHHH-cCHHHHHHHHHhCCcCC
Confidence 8875 99999999988766544
No 51
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.11 E-value=3.8e-09 Score=126.54 Aligned_cols=94 Identities=19% Similarity=0.140 Sum_probs=71.9
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCC---EEEEEeecC-------------CcccchHHHHHHHHHHHHHc
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGG---YCYLRYDDT-------------NPEAEKKEYIDHIEEIVQWM 337 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G---~~iLRidDT-------------Dp~Re~~e~~~~I~edL~wL 337 (798)
++|==+|.|||.+||||+++.+..+.+||. ..| .|+.-.|+. +|......|.+.+.+++++|
T Consensus 5 ~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 84 (673)
T PRK00133 5 LVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGF 84 (673)
T ss_pred EEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 445557899999999999999999999983 334 344443432 22334567899999999999
Q ss_pred CCCCCcccCCc--hhHHHHHHHHHHHHHcCCccc
Q 003751 338 GWEPFKITYTS--DYFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 338 Gl~pd~i~yqS--d~~~~~ye~a~~LI~~G~AY~ 369 (798)
|+.+|..++.+ +|.+...+...+|+++|.+|.
T Consensus 85 ~i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~ 118 (673)
T PRK00133 85 GISFDNYGSTHSEENRELAQEIYLKLKENGYIYE 118 (673)
T ss_pred CCCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEE
Confidence 99998755554 588888889999999999875
No 52
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.09 E-value=6.3e-10 Score=121.65 Aligned_cols=93 Identities=23% Similarity=0.272 Sum_probs=67.2
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCccc-------------chHHHHHHHHHHHHHcC
Q 003751 277 LTRFPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPEA-------------EKKEYIDHIEEIVQWMG 338 (798)
Q Consensus 277 ~tRFaPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDTDp~R-------------e~~e~~~~I~edL~wLG 338 (798)
+|==+|.|||.+||||+++.+..+.+|| .+...|+.-+||.+.+- -...+.+.+.++++.||
T Consensus 4 it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lg 83 (314)
T cd00812 4 ILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMG 83 (314)
T ss_pred EecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 3444799999999999999999888887 34456888889887432 24678999999999999
Q ss_pred CCCCc--ccCC-ch-hHHHHHHHHHHHHHcCCccc
Q 003751 339 WEPFK--ITYT-SD-YFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 339 l~pd~--i~yq-Sd-~~~~~ye~a~~LI~~G~AY~ 369 (798)
+.+|- .... +. +.........+|.++|.+|.
T Consensus 84 i~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~ 118 (314)
T cd00812 84 FSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYK 118 (314)
T ss_pred cceecccccccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 98762 2222 22 22222234459999999874
No 53
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.08 E-value=1.5e-09 Score=125.94 Aligned_cols=251 Identities=16% Similarity=0.185 Sum_probs=145.3
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCcccc---------------------------
Q 003751 275 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEAE--------------------------- 322 (798)
Q Consensus 275 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~-----~~G~~iLRidDTDp~Re--------------------------- 322 (798)
.++.-=+.+|||.+||||++.++..+.++|. +...|+.=-||.|+-|.
T Consensus 24 ~~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G 103 (510)
T PRK00750 24 PVVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFG 103 (510)
T ss_pred cEEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCC
Confidence 3777778899999999999999988888873 45578888899985322
Q ss_pred -----hHHHHHHHHHHHHHcCCCCCcc----cCCchhHHHHHHHHHHHH-HcCCccccCCCHHHHHHHhccCCCCCCC-C
Q 003751 323 -----KKEYIDHIEEIVQWMGWEPFKI----TYTSDYFQELYELAVELI-RRGHAYVDHQTPEEIKEYREKKMNSPWR-D 391 (798)
Q Consensus 323 -----~~e~~~~I~edL~wLGl~pd~i----~yqSd~~~~~ye~a~~LI-~~G~AY~C~cs~eel~~~r~~~y~~~~R-~ 391 (798)
...|...+.+.++.+|+.++-+ .|+|..|. +.+...+ +++.. .+-|...++...+..|- -
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~---~~i~~~l~~~~~i------~~il~~~~~~~~~~~~~P~ 174 (510)
T PRK00750 104 CHESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYD---EAILTALENRDEI------MEILLPYLGEERQATYSPF 174 (510)
T ss_pred CchHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchH---HHHHHHHHhHHHH------HHHHHHhcCCccCCCeeee
Confidence 2356667778899999988732 23333322 2222222 22221 12333333211110000 0
Q ss_pred CChHHHHHHHHHhhcCcccCCceEEEE-EecCCCCCCCcCccEEEEEecCCCC-----CCCC---cccc-ccccccccee
Q 003751 392 RPIAESLKLFEDMRNGRIEEGKATLRM-KQDMQNDNFNMYDLIAYRIKFTPHP-----HAGD---KWCI-YPSYDYAHCI 461 (798)
Q Consensus 392 ~s~ee~l~~f~~m~~G~~~~g~~~lR~-K~d~~~~~~~~~D~V~~Ri~~~~h~-----~~gd---~~~g-~PTY~fa~~V 461 (798)
+++.++ -|+. .+..+ ..|.+ .--|-|++. .+|. +.|. .|++ ||+==
T Consensus 175 ~pic~~--------cg~~----~~~~~~~~d~~------~~~v~y~~~-cG~~~~~~~~~g~~KL~Wr~dW~~rW----- 230 (510)
T PRK00750 175 LPICPK--------CGKV----LTTPVISYDAE------AGTVTYDCE-CGHEGEVPVTGGHGKLQWKVDWPMRW----- 230 (510)
T ss_pred eeeCCC--------CCcc----ceEEEEEEeCC------CCEEEEEcC-CCCEEEEecCCCCcccCCCCCcHHHH-----
Confidence 011100 0111 01111 11111 012444332 1221 1111 2322 22210
Q ss_pred eccCCCcceEecCccccc-chhhHHHHHH-HhCCCCCceeeeeeecCC-CeeeeccccccccccCccCCCCCcchhhHHH
Q 003751 462 VDSIENITHSLCTLEFET-RRASYFWLLH-ALGLYQPYVWEYSRLNVS-NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAG 538 (798)
Q Consensus 462 DD~l~gITHviRG~E~~~-~t~~q~~L~~-aLg~~~P~~w~f~~Ln~~-g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~ 538 (798)
...||+..+.|.||.. +...+..+++ .||...|...+|+++..+ |.|||||+|+ ..++..
T Consensus 231 --~~l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G~KMSKSkGN---------------~i~~~d 293 (510)
T PRK00750 231 --AALGVDFEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKGEKISKSKGN---------------VITIED 293 (510)
T ss_pred --HHcCCCEEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCCCcccccCCC---------------ccCHHH
Confidence 2368999999999999 9999999999 999999988889987776 9999999998 356777
Q ss_pred HHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhh
Q 003751 539 LRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 578 (798)
Q Consensus 539 lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~ 578 (798)
+.+. ++|++++.|+..-.-...+..+++ |..+...|.
T Consensus 294 ~l~~-~~pd~lR~~l~~~~~~~~~~~f~~--l~~~~dey~ 330 (510)
T PRK00750 294 WLEY-APPESLRLFMFARPKPAKRLDFDV--IPKLVDEYD 330 (510)
T ss_pred HHHH-CCHHHHHHHHHhCCCCCCCCcccH--HHHHHHHHH
Confidence 7766 899999988774332222333443 555555544
No 54
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.06 E-value=1.4e-09 Score=127.37 Aligned_cols=94 Identities=20% Similarity=0.199 Sum_probs=74.8
Q ss_pred eEEEeCCCCCCcCchhHHHHH-HHHHHHHHH-----cCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHH
Q 003751 276 VLTRFPPEPNGYLHIGHAKAM-FVDFGLAKE-----RGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQW 336 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaa-l~n~l~Ar~-----~~G~~iLRidDTDp~-------------Re~~e~~~~I~edL~w 336 (798)
++|==+|.|||.|||||+++. +..+.+||. ++..|+.-+||.+.+ .-...+.+.|.++++.
T Consensus 6 ~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 85 (556)
T PRK12268 6 LITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKK 85 (556)
T ss_pred EEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 455568999999999999998 888888872 344566667766532 1246789999999999
Q ss_pred cCCCCCcccCCc--hhHHHHHHHHHHHHHcCCccc
Q 003751 337 MGWEPFKITYTS--DYFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 337 LGl~pd~i~yqS--d~~~~~ye~a~~LI~~G~AY~ 369 (798)
||+.+|..++++ +|.+...+...+|.++|++|.
T Consensus 86 l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~ 120 (556)
T PRK12268 86 LGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYK 120 (556)
T ss_pred cCCcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEE
Confidence 999999776677 788888899999999999884
No 55
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.06 E-value=8e-09 Score=114.55 Aligned_cols=236 Identities=17% Similarity=0.203 Sum_probs=137.7
Q ss_pred CeeEEEeCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCcccc--------------------------
Q 003751 274 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPEAE-------------------------- 322 (798)
Q Consensus 274 g~v~tRFaPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDTDp~Re-------------------------- 322 (798)
.+++.-=+++|||.+||||++..+..+.+|| .+...|+.-.||-|+-|.
T Consensus 19 ~~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~ 98 (353)
T cd00674 19 EKYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGC 98 (353)
T ss_pred CeEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCC
Confidence 3566666889999999999999988888887 355678888888876332
Q ss_pred ----hHHHHHHHHHHHHHcCCCCCcccCCchhHHH-HHHHHH-HHHHcCCccccCCCHHHHHHHhccCCCCCCC-CCChH
Q 003751 323 ----KKEYIDHIEEIVQWMGWEPFKITYTSDYFQE-LYELAV-ELIRRGHAYVDHQTPEEIKEYREKKMNSPWR-DRPIA 395 (798)
Q Consensus 323 ----~~e~~~~I~edL~wLGl~pd~i~yqSd~~~~-~ye~a~-~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R-~~s~e 395 (798)
...+...+.+.|+.||+..+-+..+..|-.. |-+.+. .|-+++.. ++-|.+.++...+..|- -.++.
T Consensus 99 ~~~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~~~L~~~~~I------~~i~~~~~~~~~~~~~~P~~p~c 172 (353)
T cd00674 99 CESYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENILIALEKRDEI------MAILNEYRGRELQETWYPFMPYC 172 (353)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHHHHHHHCChH------HHHHHHhcCCccCCCceeeeeec
Confidence 3456777788899999998743222223222 222222 34444443 23444444321110000 01111
Q ss_pred HHHHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCC-----CCCC---cccc-cccccccceeeccCC
Q 003751 396 ESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHP-----HAGD---KWCI-YPSYDYAHCIVDSIE 466 (798)
Q Consensus 396 e~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~-----~~gd---~~~g-~PTY~fa~~VDD~l~ 466 (798)
++ -|... ..++ ..+.+ ..-|-|++. .+|. ..|. .|++ ||+== +..
T Consensus 173 ~~--------cg~~~--~~v~--~~d~~------~~~v~y~c~-cG~~g~~~~~~g~~KL~Wr~dW~~rW-------~~l 226 (353)
T cd00674 173 EK--------CGKDT--TTVE--AYDAK------AGTVTYKCE-CGHEETVDIRTGRGKLTWRVDWPMRW-------AIL 226 (353)
T ss_pred CC--------cCcce--eEEE--EEeCC------CCeEEEEcC-CCCEEEEeecCCCcccCCCCCchhhh-------hhc
Confidence 10 01100 0011 11110 112445442 2221 1111 2422 22211 235
Q ss_pred CcceEecCcccccc---hhhHHHHHH-HhCCCCCceeeeeeecCCCe-eeeccccccccccCccCCCCCcchhhHHHHHH
Q 003751 467 NITHSLCTLEFETR---RASYFWLLH-ALGLYQPYVWEYSRLNVSNT-VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRR 541 (798)
Q Consensus 467 gITHviRG~E~~~~---t~~q~~L~~-aLg~~~P~~w~f~~Ln~~g~-KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrr 541 (798)
||+-=+-|.||..+ -..-..+++ .||...|....|+++...|. |||||+|+ ..++..+.+
T Consensus 227 ~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V~l~gg~KMSKSkGn---------------vI~~~dll~ 291 (353)
T cd00674 227 GVDFEPFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFIGLKGGGKMSSSKGN---------------VITPSDWLE 291 (353)
T ss_pred CCCEEeeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeEEeCCCCccCCCCCC---------------cCCHHHHHH
Confidence 77777779999888 555566777 99998897767787777665 99999998 368888888
Q ss_pred CCCChHHHHHHHHHcC
Q 003751 542 RGVTSTSINAFVQGIG 557 (798)
Q Consensus 542 rG~~PeAI~~fl~~lG 557 (798)
. +.|++++-|++...
T Consensus 292 ~-~~~dalR~~~l~~~ 306 (353)
T cd00674 292 V-APPEVLRYLYARRK 306 (353)
T ss_pred H-hChHHHHHHHHhCC
Confidence 7 89999999888765
No 56
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.05 E-value=3.3e-09 Score=117.21 Aligned_cols=91 Identities=22% Similarity=0.234 Sum_probs=71.3
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeec----CCcc--------------------------cchHH
Q 003751 281 PPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDD----TNPE--------------------------AEKKE 325 (798)
Q Consensus 281 aPsPtG~LHIGharaal~n~l~Ar~-----~~G~~iLRidD----TDp~--------------------------Re~~e 325 (798)
||+|||.+|||||++.++.+.++|. +...|+.-+|| ++.. .-..+
T Consensus 9 pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (338)
T cd00818 9 PPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKCREFALR 88 (338)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHHHHHHHH
Confidence 8999999999999999998888873 44557777777 4321 11336
Q ss_pred HHHHHHHHHHHcCC--CCCc--ccCCchhHHHHHHHHHHHHHcCCccccC
Q 003751 326 YIDHIEEIVQWMGW--EPFK--ITYTSDYFQELYELAVELIRRGHAYVDH 371 (798)
Q Consensus 326 ~~~~I~edL~wLGl--~pd~--i~yqSd~~~~~ye~a~~LI~~G~AY~C~ 371 (798)
+.+.|.++++.||+ .|+. .|...+|.+...+...+|.++|++|.-.
T Consensus 89 ~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~ 138 (338)
T cd00818 89 YVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGY 138 (338)
T ss_pred HHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccC
Confidence 77889999999999 6664 4556688888889999999999999643
No 57
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.05 E-value=1.1e-09 Score=130.62 Aligned_cols=94 Identities=22% Similarity=0.214 Sum_probs=73.3
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCC---EEEEEeecCCcc-------------cchHHHHHHHHHHHHHc
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGG---YCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWM 337 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G---~~iLRidDTDp~-------------Re~~e~~~~I~edL~wL 337 (798)
++|==.|.|||++||||+++++..+.+||. ..| .|+.-.||.+.+ .....+.+.|.+++++|
T Consensus 7 ~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~l 86 (648)
T PRK12267 7 YITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKL 86 (648)
T ss_pred EEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 556668999999999999999999999883 334 555555655432 23567889999999999
Q ss_pred CCCCCcccCCch--hHHHHHHHHHHHHHcCCccc
Q 003751 338 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 338 Gl~pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~ 369 (798)
|+.+|..++.++ |.....+...+|.++|++|.
T Consensus 87 gI~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~ 120 (648)
T PRK12267 87 DISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYK 120 (648)
T ss_pred CCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999998777666 65566677889999999885
No 58
>PLN02224 methionine-tRNA ligase
Probab=99.00 E-value=9.5e-09 Score=121.44 Aligned_cols=94 Identities=16% Similarity=0.016 Sum_probs=72.4
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cC---CEEEEEeecCCc-------------ccchHHHHHHHHHHHHHc
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RG---GYCYLRYDDTNP-------------EAEKKEYIDHIEEIVQWM 337 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~---G~~iLRidDTDp-------------~Re~~e~~~~I~edL~wL 337 (798)
++|==+|.|||.+|||||++.++.+.+||. .. ..|+.-+||.+. ..-..++.+.+.+.+++|
T Consensus 72 ~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 151 (616)
T PLN02224 72 VLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKDL 151 (616)
T ss_pred EEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Confidence 667778899999999999999999999984 33 456666666652 122456777888999999
Q ss_pred CCCCCcccCCch--hHHHHHHHHHHHHHcCCccc
Q 003751 338 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 338 Gl~pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~ 369 (798)
|+.||..+++++ |....++...+|.++|+.|.
T Consensus 152 ~I~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~ 185 (616)
T PLN02224 152 DIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYR 185 (616)
T ss_pred CCCCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999998766665 55566677789999999764
No 59
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=98.85 E-value=3.2e-08 Score=111.14 Aligned_cols=92 Identities=25% Similarity=0.260 Sum_probs=64.6
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc---------c-----------------------ch
Q 003751 278 TRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE---------A-----------------------EK 323 (798)
Q Consensus 278 tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDTDp~---------R-----------------------e~ 323 (798)
|==+|+|||.|||||+++.++.+.+||. ..|.-++.+..+|.- + -.
T Consensus 6 ~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (382)
T cd00817 6 DTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWK 85 (382)
T ss_pred ecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHHH
Confidence 3348999999999999999999999983 345544444444420 0 12
Q ss_pred HHHHHHHHHHHHHcCCCC--Cccc--CCchhHHHHHHHHHHHHHcCCccc
Q 003751 324 KEYIDHIEEIVQWMGWEP--FKIT--YTSDYFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 324 ~e~~~~I~edL~wLGl~p--d~i~--yqSd~~~~~ye~a~~LI~~G~AY~ 369 (798)
.++.+.+.++++.||+.. +..+ ...+|.+.......+|.++|++|.
T Consensus 86 ~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 135 (382)
T cd00817 86 EESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYR 135 (382)
T ss_pred HHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 457888899999999864 4543 333454555566679999999876
No 60
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=98.77 E-value=9.1e-08 Score=107.88 Aligned_cols=102 Identities=20% Similarity=0.156 Sum_probs=66.6
Q ss_pred eccCCCcceEecCccccc-chhhHHHHHHHhCCCCCceee-eeeecCCCeeeeccccccccccCccCCCCCcchhhHHHH
Q 003751 462 VDSIENITHSLCTLEFET-RRASYFWLLHALGLYQPYVWE-YSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGL 539 (798)
Q Consensus 462 DD~l~gITHviRG~E~~~-~t~~q~~L~~aLg~~~P~~w~-f~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~l 539 (798)
+|..-.+.|+| |.|..- ++...-.++-++|++.|.... ++++..+|.||||+.++. .....+
T Consensus 278 ~~~~~~~v~~i-GkDi~~fH~i~~pa~l~a~~~~lP~~i~~~~~~~~~g~K~SkS~gn~---------------i~~~~~ 341 (391)
T PF09334_consen 278 NDSDVEIVHFI-GKDIIRFHAIYWPAMLLAAGLPLPRRIVVHGFLTLDGEKMSKSRGNV---------------IWPDDL 341 (391)
T ss_dssp ST--SEEEEEE-EGGGHHHHHTHHHHHHHHCTB---SEEEEE--EEETTCCEETTTTES---------------SBHHHH
T ss_pred ccCCceEEEEE-ccchhHHHHHHhHHHHhcccCCCCCEEEeeeeEEECCeeccccCCcc---------------cCHHHH
Confidence 34445567876 776642 333344455678888886432 467899999999999873 356667
Q ss_pred HHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhhhc
Q 003751 540 RRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNK 580 (798)
Q Consensus 540 rrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~ 580 (798)
.++ |.++++|-||+..+.-..+..++++.+.+.+...+..
T Consensus 342 ~~~-~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~ 381 (391)
T PF09334_consen 342 LEE-YGADALRYYLAREGPEGQDSDFSWEDFIERVNNELAN 381 (391)
T ss_dssp HHH-H-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCC
T ss_pred HHh-CChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 766 8999999999999887778889998888777666544
No 61
>PLN02610 probable methionyl-tRNA synthetase
Probab=98.75 E-value=5.5e-07 Score=109.65 Aligned_cols=94 Identities=17% Similarity=0.142 Sum_probs=67.4
Q ss_pred eEEEeCCCCCCcCchhHHHH-HHHHHHHHHH--cCCEEEEEeecCCc----------------ccchHHHHHHHHHHHHH
Q 003751 276 VLTRFPPEPNGYLHIGHAKA-MFVDFGLAKE--RGGYCYLRYDDTNP----------------EAEKKEYIDHIEEIVQW 336 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGhara-al~n~l~Ar~--~~G~~iLRidDTDp----------------~Re~~e~~~~I~edL~w 336 (798)
++|==.|.|||.+||||+++ .+..+.+||. ..|.=++-+.-||. ..-...+.+.+.+.++|
T Consensus 20 ~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~ 99 (801)
T PLN02610 20 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDW 99 (801)
T ss_pred EEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 56777899999999999995 5778999984 35655555666651 22244566777888999
Q ss_pred cCCCCCcccCCch--hHHHHHHHHHHHHHcCCccc
Q 003751 337 MGWEPFKITYTSD--YFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 337 LGl~pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~ 369 (798)
||+.+|..++.++ |....++...+|.++|+.|.
T Consensus 100 l~i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~ 134 (801)
T PLN02610 100 FDISFDKFGRTSTPQQTEICQAIFKKLMENNWLSE 134 (801)
T ss_pred cCCccccCccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 9999997655552 44444456678999998653
No 62
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=1.7e-07 Score=109.28 Aligned_cols=94 Identities=19% Similarity=0.274 Sum_probs=72.0
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCC----------------cccchHHHHHHHHHHHHHc
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQWM 337 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDTD----------------p~Re~~e~~~~I~edL~wL 337 (798)
++|==-|.|||.+||||+.+.+..+.+|| +..|.=++=+.-|| |..-..++.+.+.++.+||
T Consensus 8 ~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l 87 (558)
T COG0143 8 LVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKAL 87 (558)
T ss_pred EEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 56667899999999999999999999999 45576555566666 2233567788899999999
Q ss_pred CCCCCccc--CCchhHHHHHHHHHHHHHcCCccc
Q 003751 338 GWEPFKIT--YTSDYFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 338 Gl~pd~i~--yqSd~~~~~ye~a~~LI~~G~AY~ 369 (798)
+|..|... ..+.|...-.+.-.+|.++|..|.
T Consensus 88 ~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~ 121 (558)
T COG0143 88 NISFDNFIRTTSPEHKELVQEFFLKLYENGDIYL 121 (558)
T ss_pred CCcccccccCCCHHHHHHHHHHHHHHHHCCCEec
Confidence 99999643 344455555667789999999764
No 63
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.68 E-value=5e-07 Score=104.92 Aligned_cols=95 Identities=14% Similarity=0.107 Sum_probs=67.1
Q ss_pred CCcceEecCcccccchhhH---HHHH-HHhCCCCCc--eeeeeeecCCCeeeeccccccccccCccCCCCCcchhhHHHH
Q 003751 466 ENITHSLCTLEFETRRASY---FWLL-HALGLYQPY--VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGL 539 (798)
Q Consensus 466 ~gITHviRG~E~~~~t~~q---~~L~-~aLg~~~P~--~w~f~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~l 539 (798)
.|||-=--|.||..+..+| ..++ ++||.+.|. .+++-||..+|.|||||+|+ ..|+..+
T Consensus 224 lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~v~L~~~g~KMSKS~Gn---------------~itl~dl 288 (515)
T TIGR00467 224 EKVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEWISLKGKGGKMSSSKGD---------------VISVKDV 288 (515)
T ss_pred hCcccccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEEEEEcCCCccccCCCCC---------------CccHHHH
Confidence 4566556788888866443 3355 489887774 44455678788999999998 4799999
Q ss_pred HHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhh
Q 003751 540 RRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 578 (798)
Q Consensus 540 rrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~ 578 (798)
.+. +.|++++-|++.-.... ...++++.| ++...|.
T Consensus 289 l~~-~~pdalR~~~l~~~~~~-~ldFd~~~l-~~~dey~ 324 (515)
T TIGR00467 289 LEV-YTPEITRFLFARTKPEF-HISFDLDVI-KLYEDYD 324 (515)
T ss_pred HHH-cCHHHHHHHHhccCCCC-CCcCCHHHH-HHHHHHH
Confidence 987 89999998876654433 335676677 6655554
No 64
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=98.68 E-value=1.1e-07 Score=102.80 Aligned_cols=171 Identities=19% Similarity=0.152 Sum_probs=117.3
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-------CcccchHHHHHHHHHHHHHcCCCCCc--ccCCchhHHH
Q 003751 283 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQE 353 (798)
Q Consensus 283 sPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDT-------Dp~Re~~e~~~~I~edL~wLGl~pd~--i~yqSd~~~~ 353 (798)
.|||.|||||...|+.++...+..|..+++.|.|. +..++..++...+..++.++|++|++ +.+||++. .
T Consensus 7 ~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~-~ 85 (280)
T cd00806 7 QPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQSDVP-E 85 (280)
T ss_pred CCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEcCCcH-H
Confidence 58999999999999999999998899999999998 45677788889999999999999964 67899986 3
Q ss_pred HHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccE
Q 003751 354 LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI 433 (798)
Q Consensus 354 ~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V 433 (798)
+++.+- .+.|.|+..++... ..+ ++ +..+ . .+.+
T Consensus 86 ~~~l~~-------~l~~~~~~~~l~r~--~~f----k~------------~~~~-------------~-~~~~------- 119 (280)
T cd00806 86 HYELAW-------LLSCVVTFGELERM--TGF----KD------------KSAQ-------------G-ESVN------- 119 (280)
T ss_pred HHHHHH-------HHhCcCCHHHHHhc--cch----hh------------hhcc-------------C-CCCc-------
Confidence 554432 26789998888542 111 10 0000 0 0000
Q ss_pred EEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhC------CCCCceeee--eee-
Q 003751 434 AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWEY--SRL- 504 (798)
Q Consensus 434 ~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg------~~~P~~w~f--~~L- 504 (798)
++.. .||.-+- .|=.+.+.++|..|.|-..+-..-.-+.+.++ +..|...+. +++
T Consensus 120 ~g~~-------------~YP~lqa---aDil~~~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~ 183 (280)
T cd00806 120 IGLL-------------TYPVLQA---ADILLYKACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLP 183 (280)
T ss_pred chhh-------------cchHHHH---hhhhhccCCEEeeccccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccc
Confidence 0000 1332222 22234456888999999888888788888888 667754443 343
Q ss_pred cCCC--eeeecccc
Q 003751 505 NVSN--TVMSKRKL 516 (798)
Q Consensus 505 n~~g--~KLSKR~~ 516 (798)
+.+| .|||||.+
T Consensus 184 ~l~g~~~KMSKS~~ 197 (280)
T cd00806 184 GLQGPSKKMSKSDP 197 (280)
T ss_pred cCCCCCCcccCCCC
Confidence 5555 59999987
No 65
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=98.67 E-value=2.3e-07 Score=109.14 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=42.3
Q ss_pred cCcccccchhhHHHHHHHhCCCCCc-e--eeeeeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHC
Q 003751 473 CTLEFETRRASYFWLLHALGLYQPY-V--WEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR 542 (798)
Q Consensus 473 RG~E~~~~t~~q~~L~~aLg~~~P~-~--w~f~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrr 542 (798)
-|.|+..+-.+-..++++||+..+. . ..|+.++.+|.|||+|+|. ..+|..|.+.
T Consensus 331 ~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~~~g~kmStR~G~---------------~v~l~dLlde 388 (562)
T PRK12451 331 VGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLILKDGKKMSTRKGR---------------VVLLEEVLEE 388 (562)
T ss_pred eCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeEecCCCCCcCCCCC---------------eeEHHHHHHH
Confidence 4888888888888888999986442 2 2357788899999999997 3578887764
No 66
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=98.57 E-value=4.1e-07 Score=107.20 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=38.5
Q ss_pred CcceE--ecCcccccchhhHHHHHHHhCCCCCc-eeeeeeecCCCeeeecccccc
Q 003751 467 NITHS--LCTLEFETRRASYFWLLHALGLYQPY-VWEYSRLNVSNTVMSKRKLNF 518 (798)
Q Consensus 467 gITHv--iRG~E~~~~t~~q~~L~~aLg~~~P~-~w~f~~Ln~~g~KLSKR~~~~ 518 (798)
+.+++ |-|.|+..+-.+-..++.+||++.|. .-|+++--+.+.+||||+|+.
T Consensus 326 ~~d~iI~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~V~~~kmSkr~Gn~ 380 (566)
T TIGR00456 326 GFDKMIYVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGMVPLGSMKTRRGNV 380 (566)
T ss_pred CCCEEEEEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEEEECCCCCccCCce
Confidence 44443 35889998888888899999997774 444555445678999999973
No 67
>PLN02286 arginine-tRNA ligase
Probab=98.46 E-value=1.6e-06 Score=102.27 Aligned_cols=45 Identities=24% Similarity=0.418 Sum_probs=35.6
Q ss_pred CeeEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCC
Q 003751 274 GNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN 318 (798)
Q Consensus 274 g~v~tRF-aPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDTD 318 (798)
.+|+.=| +|+|+|+||+||+|++++...+|| ..-|.-+.|.--+|
T Consensus 117 ~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyin 164 (576)
T PLN02286 117 KRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVG 164 (576)
T ss_pred ceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeec
Confidence 4688888 999999999999999999998888 34455555544443
No 68
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=7.8e-06 Score=96.21 Aligned_cols=230 Identities=18% Similarity=0.167 Sum_probs=112.7
Q ss_pred CCeeEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCc-ccchHHHHHHHHHHHHHcCCCCC-cccCC
Q 003751 273 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP-EAEKKEYIDHIEEIVQWMGWEPF-KITYT 347 (798)
Q Consensus 273 ~g~v~tRF-aPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDTDp-~Re~~e~~~~I~edL~wLGl~pd-~i~yq 347 (798)
+.+|+.=| +|+|||+|||||+|++++...+|| ..-|.=+.|.--+|. .+...-..-++ ...|.... ...-.
T Consensus 116 ~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~----~~~~~e~~~~~~~~ 191 (577)
T COG0018 116 GKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSY----EKRGREALGLTPEP 191 (577)
T ss_pred CCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHH----HHhccccccCCCCc
Confidence 34788999 999999999999999999999998 333444444443432 22222222222 22222211 01111
Q ss_pred chhHHHHH-HHHHHHHHcCC-----------------cc------ccCCCHHHHHHHhc------cCC---CCCCCCCCh
Q 003751 348 SDYFQELY-ELAVELIRRGH-----------------AY------VDHQTPEEIKEYRE------KKM---NSPWRDRPI 394 (798)
Q Consensus 348 Sd~~~~~y-e~a~~LI~~G~-----------------AY------~C~cs~eel~~~r~------~~y---~~~~R~~s~ 394 (798)
-.++..+| +.+++|.+... .+ .|.-+-+++++.=. ..+ .....+-.+
T Consensus 192 ~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~ 271 (577)
T COG0018 192 DGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKV 271 (577)
T ss_pred chHHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccH
Confidence 12333333 34444444332 22 11111111111000 111 122333345
Q ss_pred HHHHHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccceeeccCCCcce--Ee
Q 003751 395 AESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITH--SL 472 (798)
Q Consensus 395 ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITH--vi 472 (798)
++.+..+++.-......|..++.+--.. ......|.|+-|. +|+- .|.|=|+|+..+=.-.|-+. -+
T Consensus 272 ~~vv~~L~~~~~~~e~~GA~~vdl~~~~--~~gd~~~~vl~KS-------DGt~--lY~t~DIAy~~~K~~~~~d~~IyV 340 (577)
T COG0018 272 EKVVEDLEEKGLLYEDDGALVVDLLKFK--KFGDDKDRVLQKS-------DGTY--LYFTRDIAYHLYKFERGFDKLIYV 340 (577)
T ss_pred HHHHHHHHhcCCEeeeCCeEEEehhhhh--hcCCCCCeEEEEc-------CCCe--eeehhHHHHHHHHHhcCCCEEEEE
Confidence 5555444433222222454444432100 1222357787776 3421 24444444443322233332 23
Q ss_pred cCcccccchhhHHHHHHHhCCCCCc-e-ee--eeee-cCCCeeeeccccc
Q 003751 473 CTLEFETRRASYFWLLHALGLYQPY-V-WE--YSRL-NVSNTVMSKRKLN 517 (798)
Q Consensus 473 RG~E~~~~t~~q~~L~~aLg~~~P~-~-w~--f~~L-n~~g~KLSKR~~~ 517 (798)
-|.||..+-.+-..++..+|+..+. + .| |+.+ +-+|.|||||.|.
T Consensus 341 ~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~ 390 (577)
T COG0018 341 LGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGN 390 (577)
T ss_pred eCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCc
Confidence 5889988888878888899987663 2 22 3344 4589999999997
No 69
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=98.20 E-value=9.1e-06 Score=90.66 Aligned_cols=47 Identities=32% Similarity=0.568 Sum_probs=38.3
Q ss_pred CCeeEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCc
Q 003751 273 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP 319 (798)
Q Consensus 273 ~g~v~tRF-aPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDTDp 319 (798)
+.+|+.=| +|+|+|+|||||+|++++...+|| .+.|.-+.|.--+|.
T Consensus 19 ~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD 68 (354)
T PF00750_consen 19 GKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGD 68 (354)
T ss_dssp SEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBT
T ss_pred CCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECC
Confidence 45799999 999999999999999999999999 678888888877763
No 70
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=9.6e-06 Score=89.92 Aligned_cols=278 Identities=18% Similarity=0.178 Sum_probs=145.4
Q ss_pred CCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc------------cchHHHHHHHHHH----HHHcCCCCCcc
Q 003751 283 EPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE------------AEKKEYIDHIEEI----VQWMGWEPFKI 344 (798)
Q Consensus 283 sPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDTDp~------------Re~~e~~~~I~ed----L~wLGl~pd~i 344 (798)
-||-..||||+.+.++.+.+||. ..|.-+.=.+.||.- +.-+++.+.|-.. -.-+|+..+..
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt~F 128 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYTKF 128 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchhhe
Confidence 47888999999999999999994 568877777888731 2334444444333 44568888776
Q ss_pred cCCch--hHHHHHHHHHHHHHcCCccc-------c-----CCCHHHHHHHhcc---------CCCCCCCCCChHHH----
Q 003751 345 TYTSD--YFQELYELAVELIRRGHAYV-------D-----HQTPEEIKEYREK---------KMNSPWRDRPIAES---- 397 (798)
Q Consensus 345 ~yqSd--~~~~~ye~a~~LI~~G~AY~-------C-----~cs~eel~~~r~~---------~y~~~~R~~s~ee~---- 397 (798)
.+.++ |.....++-..+.++|..|. | |-.+.++.+...+ +.+..||. |+|
T Consensus 129 IRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~k---E~NY~Fr 205 (578)
T KOG0436|consen 129 IRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRK---EDNYFFR 205 (578)
T ss_pred eecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEec---ccceeee
Confidence 56554 55556666677888898774 2 2233333332110 01111111 111
Q ss_pred HHHHHHhhcCcccCCc----eEEEEEecCCCCCCCcCccEEEEEecCCC---CCCCCc------c----------ccccc
Q 003751 398 LKLFEDMRNGRIEEGK----ATLRMKQDMQNDNFNMYDLIAYRIKFTPH---PHAGDK------W----------CIYPS 454 (798)
Q Consensus 398 l~~f~~m~~G~~~~g~----~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h---~~~gd~------~----------~g~PT 454 (798)
|..|.+-....+...+ ...+..+-++.-...+.|+-+-|-+..-| |..||+ | .|||-
T Consensus 206 LSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~nYiSvig~~~ 285 (578)
T KOG0436|consen 206 LSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNYISVIGYPN 285 (578)
T ss_pred HHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCCCcceEEEeHHHHhhHHHhhcCCc
Confidence 1111111000000000 00000000000012245555544321111 222332 2 13331
Q ss_pred --ccccceeeccCCCcceEecCcccccchhhH-HHHHHHhCCCCCcee-eeeeecCCCeeeeccccccccccCccCCCCC
Q 003751 455 --YDYAHCIVDSIENITHSLCTLEFETRRASY-FWLLHALGLYQPYVW-EYSRLNVSNTVMSKRKLNFLVTNKYVDGWDD 530 (798)
Q Consensus 455 --Y~fa~~VDD~l~gITHviRG~E~~~~t~~q-~~L~~aLg~~~P~~w-~f~~Ln~~g~KLSKR~~~~lv~~g~v~gWdD 530 (798)
-+.-..+----=.-.||| |.|.+---..| -.++=+-|++.|... -|+|...+|.||||+.|+.. |
T Consensus 286 ~~~N~k~~ls~~wPat~HvI-GKDIlrFHavYWPafLmaAGlplP~~I~vHghwt~ngmKMsKSLGNvv----------d 354 (578)
T KOG0436|consen 286 KQQNLKTALSFGWPATLHVI-GKDILRFHAVYWPAFLMAAGLPLPKMIFVHGHWTKNGMKMSKSLGNVV----------D 354 (578)
T ss_pred hhccccceeecCCCceeeeh-hhhhhhhhhhhhHHHHHhcCCCCccEEEEeeeeeecceecchhhcccc----------C
Confidence 111111111111234766 66654322222 112234588888644 47899999999999999842 4
Q ss_pred cchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhhhc
Q 003751 531 PCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNK 580 (798)
Q Consensus 531 Pr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~ 580 (798)
|+ .|.++ |.+.++|.|++.-|.-..+..++.+.|.......+..
T Consensus 355 P~-----~l~~k-ygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~ 398 (578)
T KOG0436|consen 355 PF-----ELVQK-YGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLAN 398 (578)
T ss_pred HH-----HHHHH-hCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHH
Confidence 42 34443 8889999999988887778888888887766555543
No 71
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.06 E-value=5.6e-05 Score=84.01 Aligned_cols=240 Identities=20% Similarity=0.241 Sum_probs=107.8
Q ss_pred HHHHHhhhh--cCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCcccc-------------
Q 003751 263 EVLDKHLEV--TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEAE------------- 322 (798)
Q Consensus 263 ~~~~~hl~~--~~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~-----~~G~~iLRidDTDp~Re------------- 322 (798)
++++++.+. .++.++.-=.=+|||..||||+|-++..++.++. ...++|+--||.|+-|.
T Consensus 10 ~i~~~r~~~~~~~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~y 89 (360)
T PF01921_consen 10 EIIKERGKRKGGKEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKY 89 (360)
T ss_dssp HHHHHC-------SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCC
T ss_pred HHHHHhhccccCCccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHh
Confidence 444444433 3456777777899999999999999999988873 33579999999996542
Q ss_pred ------------------hHHHHHHHHHHHHHcCCCCCc----ccCCchhHHHHHHHHHHHHHcCCccccCCCHHHH---
Q 003751 323 ------------------KKEYIDHIEEIVQWMGWEPFK----ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEI--- 377 (798)
Q Consensus 323 ------------------~~e~~~~I~edL~wLGl~pd~----i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel--- 377 (798)
.+.|...+.+.|+.||+++.- ..|+|..|+.....| ++ .+++|
T Consensus 90 lg~Plt~VPdP~G~~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~i~~a---L~---------~~~~I~~I 157 (360)
T PF01921_consen 90 LGKPLTRVPDPFGCHESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQIRTA---LE---------NRDEIREI 157 (360)
T ss_dssp TTSBTTTSB-TTSSSSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHHHCHH---HH---------THHHHHHH
T ss_pred cCCccccCCCCCCCCccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHHHHHH---HH---------hHHHHHHH
Confidence 246677778889999997642 345555544333222 11 12222
Q ss_pred -HHHhccCCCCCCC-CCChHHHHHHHHHhhcCcccCCceEEEE-EecCCCCCCCcCccEEEEEecCCCC-----CCCC--
Q 003751 378 -KEYREKKMNSPWR-DRPIAESLKLFEDMRNGRIEEGKATLRM-KQDMQNDNFNMYDLIAYRIKFTPHP-----HAGD-- 447 (798)
Q Consensus 378 -~~~r~~~y~~~~R-~~s~ee~l~~f~~m~~G~~~~g~~~lR~-K~d~~~~~~~~~D~V~~Ri~~~~h~-----~~gd-- 447 (798)
.+.++...+..|- -.++.++ -|+. .+..+ ..+.+ ..-|-|++...+|. +.|.
T Consensus 158 l~~~~~~~~~~~y~Pf~piC~~--------cGri----~tt~v~~~d~~------~~~v~Y~c~~cG~~g~~~i~~g~gK 219 (360)
T PF01921_consen 158 LNEYRGRERPETYSPFLPICEK--------CGRI----DTTEVTEYDPE------GGTVTYRCEECGHEGEVDITGGNGK 219 (360)
T ss_dssp HHHHHHHT--TT--SEEEEETT--------TEE------EEEEEEE--S------SSEEEEE--TTS---EEETTTT-EE
T ss_pred HHHhcCcCCCCCeeeeeeeccc--------cCCc----ccceeeEeecC------CCEEEEEecCCCCEEEEecCCCccc
Confidence 2222211110000 0011000 0110 01111 11111 34577777444442 1121
Q ss_pred -cccc-cccccccceeeccCCCcceEecCccccc---chhhHHHHH-HHhCCCCCceeeeeeecCCCe-eeecccccccc
Q 003751 448 -KWCI-YPSYDYAHCIVDSIENITHSLCTLEFET---RRASYFWLL-HALGLYQPYVWEYSRLNVSNT-VMSKRKLNFLV 520 (798)
Q Consensus 448 -~~~g-~PTY~fa~~VDD~l~gITHviRG~E~~~---~t~~q~~L~-~aLg~~~P~~w~f~~Ln~~g~-KLSKR~~~~lv 520 (798)
.|++ ||+== +..||+-=-=|.||.+ |......|+ +.||...|....|......|. ||||++|+
T Consensus 220 L~WkvDW~mRW-------~~lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~~~~~g~~kmSsSkG~--- 289 (360)
T PF01921_consen 220 LQWKVDWPMRW-------AALGVDFEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEFFLDKGGGKMSSSKGN--- 289 (360)
T ss_dssp E-HHHHHHHHH-------HHTT-SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE--EEES--------------
T ss_pred ccCCCcChhhh-------hhcCceeccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeEEEeCCCcccccCCCC---
Confidence 2432 22211 1256666667889988 777778899 789999998888877655554 99999998
Q ss_pred ccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHH
Q 003751 521 TNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQG 555 (798)
Q Consensus 521 ~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~ 555 (798)
..|+....+- ++||.|+-|+..
T Consensus 290 ------------~~t~~e~L~~-~~PE~lr~l~~~ 311 (360)
T PF01921_consen 290 ------------GITPEEWLEY-APPESLRYLMAR 311 (360)
T ss_dssp ---------------HHHHHTT-S-HHHHHHHHHC
T ss_pred ------------ccCHHHHHHh-cCHHHHHHHHcc
Confidence 3689888875 677877766654
No 72
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.82 E-value=0.00018 Score=80.78 Aligned_cols=191 Identities=20% Similarity=0.245 Sum_probs=110.9
Q ss_pred ccCcHHHHHHhhhhc-CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCc-------ccchHHHHHH
Q 003751 258 CCNTKEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP-------EAEKKEYIDH 329 (798)
Q Consensus 258 ~~~~~~~~~~hl~~~-~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp-------~Re~~e~~~~ 329 (798)
.....+.+.++++.. .-.+.|=|. |||.|||||..+ +.++..-...|..+++-|-|... ..+...+...
T Consensus 50 ~hrd~d~il~~~~~~~~~~iytG~~--PSG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~ 126 (368)
T PRK12285 50 GHRDYDKILEAYRNGKPFAVYTGFM--PSGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYE 126 (368)
T ss_pred ecCCHHHHHHHHhcCCCeEEEEccC--CCCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHH
Confidence 333455555555542 224555555 458999999864 55555555567777777777631 1234455555
Q ss_pred HHHHHHHcCCCCCc--ccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcC
Q 003751 330 IEEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNG 407 (798)
Q Consensus 330 I~edL~wLGl~pd~--i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G 407 (798)
+..++-++|++|++ ++.||++.+ +++.+-.| .|.+|-.+++.. .++.. ..++
T Consensus 127 ~~~~~lA~G~Dp~k~~i~~qS~~~~-~~~l~~~l-------~~~~t~~~l~r~--~~f~~---~~~~------------- 180 (368)
T PRK12285 127 YILDLIALGFDPDKTEIYFQSENIK-VYDLAFEL-------AKKVNFSELKAI--YGFTG---ETNI------------- 180 (368)
T ss_pred HHHHHHHhCCCccceEEEECCchHH-HHHHHHHH-------HhhCcHHHHHHh--hCCCC---CCch-------------
Confidence 77888899999984 789999864 77776655 455666666432 11100 0000
Q ss_pred cccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccceee---ccCCCcceEecCcccccchhhH
Q 003751 408 RIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIV---DSIENITHSLCTLEFETRRASY 484 (798)
Q Consensus 408 ~~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VD---D~l~gITHviRG~E~~~~t~~q 484 (798)
+. -.||.-+=|.++- |.-..-++|.+|.|=..+-..-
T Consensus 181 ---------------------------g~-------------~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~h~~lt 220 (368)
T PRK12285 181 ---------------------------GH-------------IFYPATQAADILHPQLEEGPKPTLVPVGIDQDPHIRLT 220 (368)
T ss_pred ---------------------------hh-------------hhhhHHHHHHHHhhcccccCCceEEEeccchHHHHHHH
Confidence 00 0133333222220 0012456788888776555444
Q ss_pred HHHHHHh----CCCCCceeeeeee-cCCCeeeeccccc
Q 003751 485 FWLLHAL----GLYQPYVWEYSRL-NVSNTVMSKRKLN 517 (798)
Q Consensus 485 ~~L~~aL----g~~~P~~w~f~~L-n~~g~KLSKR~~~ 517 (798)
.-+.+.+ |+..|...+...+ +++|+||||+...
T Consensus 221 RdiA~r~n~~~gf~~P~~l~~~~lpgL~G~KMSkS~~~ 258 (368)
T PRK12285 221 RDIAERLHGGYGFIKPSSTYHKFMPGLTGGKMSSSKPE 258 (368)
T ss_pred HHHHHHHhhhcCCCCchhHhhhcccCCCCCcCCCCCCC
Confidence 4555666 8888864443444 7888999999853
No 73
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=97.75 E-value=0.00024 Score=78.69 Aligned_cols=170 Identities=22% Similarity=0.284 Sum_probs=105.1
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC----cc----cchHHHHHHHHHHHHHcCCCCCc--ccCCchhHH
Q 003751 283 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN----PE----AEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 352 (798)
Q Consensus 283 sPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTD----p~----Re~~e~~~~I~edL~wLGl~pd~--i~yqSd~~~ 352 (798)
.|||.+||||...++.+|..- +.|..+++=|-|.- +. .........+..++-.+|++|++ +.+||+..
T Consensus 10 ~PTG~~HlG~~l~~~~~~~~~-q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~qS~~~- 87 (328)
T TIGR00233 10 QPSGKMHLGHYLGAIQTKWLQ-QFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFIFLQSDYP- 87 (328)
T ss_pred CCCcHhHHHHHHHHHHHHHHH-hCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEEEEcCCcH-
Confidence 688999999999999988776 55666666666652 11 23344556667778889999984 78999985
Q ss_pred HHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCCcCcc
Q 003751 353 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 432 (798)
Q Consensus 353 ~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~ 432 (798)
.|++.+-.| .|++|-.++... ..+ .+++. ..+ .
T Consensus 88 e~~el~~~l-------~~~~t~~~l~r~--~~~----k~k~~-----------------------------~~~-----~ 120 (328)
T TIGR00233 88 EHYELAWLL-------SCQVTFGELKRM--TQF----KDKSQ-----------------------------AEN-----V 120 (328)
T ss_pred HHHHHHHHH-------HccCCHHHHHhc--cCc----chhcc-----------------------------CCC-----C
Confidence 455554433 467776666432 111 11000 000 0
Q ss_pred EEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhC------CCCCceee--e-ee
Q 003751 433 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWE--Y-SR 503 (798)
Q Consensus 433 V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg------~~~P~~w~--f-~~ 503 (798)
- .| .-.||..+-|.++ +.+.++|..|.|-..+-..-.-+.+.+| +..|...+ + ++
T Consensus 121 ~-----------~g--~l~YP~lqaaDil---~~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~ 184 (328)
T TIGR00233 121 P-----------IG--LFSYPVLQAADIL---LYQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPR 184 (328)
T ss_pred C-----------ch--hhcchHHHHhhhh---hcCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccccCC
Confidence 0 01 1125555555544 6678899999988766666666667777 55564333 2 22
Q ss_pred -ecCCCeeeeccccc
Q 003751 504 -LNVSNTVMSKRKLN 517 (798)
Q Consensus 504 -Ln~~g~KLSKR~~~ 517 (798)
.+.+|+||||+..+
T Consensus 185 l~gl~~~KMSKS~~~ 199 (328)
T TIGR00233 185 LMGLSGKKMSKSDPN 199 (328)
T ss_pred CCCCCCCcCCCCCCC
Confidence 35567899999875
No 74
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.0002 Score=78.39 Aligned_cols=175 Identities=19% Similarity=0.197 Sum_probs=110.1
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC-------c-ccchHHHHHHHHHHHHHcCCCCCc--ccCCchhHH
Q 003751 283 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN-------P-EAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 352 (798)
Q Consensus 283 sPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTD-------p-~Re~~e~~~~I~edL~wLGl~pd~--i~yqSd~~~ 352 (798)
-|||.|||||.-.++.+|.......+.|+.=|-|.- + +.....+...+..++=++||+|++ ++.||+.-+
T Consensus 13 ~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~if~QS~v~e 92 (314)
T COG0180 13 QPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKSTIFLQSEVPE 92 (314)
T ss_pred CCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccEEEEccCchH
Confidence 589999999999999999988877677778787763 2 134556667777777889999986 789999754
Q ss_pred HHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCCcCcc
Q 003751 353 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 432 (798)
Q Consensus 353 ~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~ 432 (798)
+++++-.| -|..+--+++.. .++.. ..+.. +. .++
T Consensus 93 -~~eLa~~l-------~~~~~~gel~r~--~~fKd----------------k~~~~---~~-----~~~----------- 127 (314)
T COG0180 93 -HAELAWLL-------SCVTNFGELERM--TQFKD----------------KSAKK---GE-----SIP----------- 127 (314)
T ss_pred -HHHHHHHH-------HccCcHHHHHhh--cCcch----------------hhhcc---cc-----ccc-----------
Confidence 66665443 465555666543 11110 00000 00 000
Q ss_pred EEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhC------CCCCceeee--ee-
Q 003751 433 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWEY--SR- 503 (798)
Q Consensus 433 V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg------~~~P~~w~f--~~- 503 (798)
.| .-.||.-.-|..+ +-+-++|=.|.|=..|-....-|.+.++ +..|..... ++
T Consensus 128 ------------~G--l~~YPvlqAADIL---l~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i 190 (314)
T COG0180 128 ------------IG--LLTYPVLQAADIL---LYQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARL 190 (314)
T ss_pred ------------cc--chhccHHHHHHhh---hccCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcc
Confidence 00 0124544444333 3345788889888877777777777776 445532222 24
Q ss_pred ecCCC-eeeeccccccc
Q 003751 504 LNVSN-TVMSKRKLNFL 519 (798)
Q Consensus 504 Ln~~g-~KLSKR~~~~l 519 (798)
..++| .||||+..+..
T Consensus 191 ~gL~g~~KMSkS~~ns~ 207 (314)
T COG0180 191 PGLDGPGKMSKSDPNSA 207 (314)
T ss_pred cCCCCCCcccccCCCCe
Confidence 36777 89999998833
No 75
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=97.69 E-value=6.9e-05 Score=92.00 Aligned_cols=94 Identities=20% Similarity=0.286 Sum_probs=68.8
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCc----------------ccchHHHHHHHHHHHHHc
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP----------------EAEKKEYIDHIEEIVQWM 337 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDTDp----------------~Re~~e~~~~I~edL~wL 337 (798)
+++==+|.|||.|||||+++.++.+.+||. ..|.-++.+-.+|. .....++.+.|.++++.|
T Consensus 35 ~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~l 114 (805)
T PRK00390 35 YVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSL 114 (805)
T ss_pred EEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 555557999999999999999999999983 45665555554442 122467899999999999
Q ss_pred CCC--CCcccC--CchhHHHHHHHHHHHHHcCCccc
Q 003751 338 GWE--PFKITY--TSDYFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 338 Gl~--pd~i~y--qSd~~~~~ye~a~~LI~~G~AY~ 369 (798)
|+. |+..++ ..+|.........+|.++|++|.
T Consensus 115 Gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~ 150 (805)
T PRK00390 115 GFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYR 150 (805)
T ss_pred CCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 995 444433 34455555566679999999876
No 76
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.63 E-value=0.00093 Score=72.05 Aligned_cols=221 Identities=16% Similarity=0.200 Sum_probs=128.7
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc-----------cchHHHHHHHHHHHHHcCCC--CC-
Q 003751 283 EPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----------AEKKEYIDHIEEIVQWMGWE--PF- 342 (798)
Q Consensus 283 sPtG-~LHIGharaal~n~l~Ar~~~G~~iLRidDT-----Dp~-----------Re~~e~~~~I~edL~wLGl~--pd- 342 (798)
.||| .|||||...++ ++..-...|..+++=|-|. ||. .+.......+..++..+|+. |+
T Consensus 8 ~PTg~~lHLG~~~~~~-~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~~~~p~k 86 (269)
T cd00805 8 DPTAPSLHLGHLVPLM-KLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILDFIPPEK 86 (269)
T ss_pred CCCCCcccHHHHHHHH-HHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHccCCCcc
Confidence 5889 89999999764 4444444465666666552 341 23455667788899999996 76
Q ss_pred -cccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEec
Q 003751 343 -KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQD 421 (798)
Q Consensus 343 -~i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d 421 (798)
.+..||+....+ +...+++ +.|+++..++..... ..+ |+. .
T Consensus 87 ~~i~~~s~~~~~l--~~~~~l~----l~~~~~~~~l~~~~~-----------~k~--------------------r~~-~ 128 (269)
T cd00805 87 AKFVNNSDWLLSL--YTLDFLR----LGKHFTVNRMLRRDA-----------VKV--------------------RLE-E 128 (269)
T ss_pred eEEEEchHhhccC--CHHHHHH----HHhhCcHHHHHHHHH-----------HHH--------------------HHh-c
Confidence 478899876651 2222332 567788777764311 000 000 0
Q ss_pred CCCCCCCcCccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCCceeee
Q 003751 422 MQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEY 501 (798)
Q Consensus 422 ~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~w~f 501 (798)
..+.. +.. -.||.-+-+..+ ..+.++++.|.|-..+-..-.-+.+.++...|....+
T Consensus 129 --~~~~~-----~~~-------------~~YP~lQaaDi~---~l~~~l~~~G~DQ~~~i~~~rd~a~r~~~~~~~~l~~ 185 (269)
T cd00805 129 --EEGIS-----FSE-------------FIYPLLQAYDFV---YLDVDLQLGGSDQRGNITLGRDLIRKLGYKKVVGLTT 185 (269)
T ss_pred --CCCCc-----HHH-------------HHHHHHHHhhHH---HHhCCeeEecHHHHHHHHHHHHHHHHhCCCCcEEEee
Confidence 00000 000 124433222221 2345888899888877777777778888877765555
Q ss_pred eee-cCCCeeeeccccccc-cccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhhh
Q 003751 502 SRL-NVSNTVMSKRKLNFL-VTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELN 579 (798)
Q Consensus 502 ~~L-n~~g~KLSKR~~~~l-v~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~ 579 (798)
+.| +.+|.||||+.++.. |.- =|+| .++....++-+++. +.+|+..+-. .+...++++.+.+..
T Consensus 186 ~ll~~l~G~KMSKS~~~~~~i~l-----~dsp--~~i~~Ki~~a~~~~-v~~~l~~~~~------~~~~~~eel~~~~~~ 251 (269)
T cd00805 186 PLLTGLDGGKMSKSEGNAIWDPV-----LDSP--YDVYQKIRNAFDPD-VLEFLKLFTF------LDYEEIEELEEEHAE 251 (269)
T ss_pred ccccCCCCCcccCCCCCcccccC-----CCCH--HHHHHHHHcCCcHH-HHHHHHHHHc------CCHHHHHHHHHHHhc
Confidence 655 789999999998653 221 1333 46666666667774 4555554311 123456666666643
No 77
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=97.60 E-value=0.00015 Score=89.53 Aligned_cols=92 Identities=27% Similarity=0.368 Sum_probs=67.5
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCc----------------ccchHHHHHHHHHHHHHc
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP----------------EAEKKEYIDHIEEIVQWM 337 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDTDp----------------~Re~~e~~~~I~edL~wL 337 (798)
+++=-+|.|||.|||||+++.++.+.+||. ..|.-++..--+|. ..-..++.+.|.++++.|
T Consensus 32 ~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~l 111 (842)
T TIGR00396 32 YILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQAL 111 (842)
T ss_pred EEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 556669999999999999999999999984 45666666555552 122457889999999999
Q ss_pred CCC--CCcccCCchhHHHHHHH----HHHHHHcCCccc
Q 003751 338 GWE--PFKITYTSDYFQELYEL----AVELIRRGHAYV 369 (798)
Q Consensus 338 Gl~--pd~i~yqSd~~~~~ye~----a~~LI~~G~AY~ 369 (798)
|+. |+..+.+++ +.|++. ..+|.++|++|.
T Consensus 112 G~~~Dw~~~~~T~d--~~y~~~~~~~F~~L~~kGliy~ 147 (842)
T TIGR00396 112 GFSYDWDREIATCD--PEYYKWTQWIFLELFEKGLAYV 147 (842)
T ss_pred CCcccCCCCcccCC--HHHHHHHHHHHHHHHHCCCeEe
Confidence 975 555544443 344544 458999999875
No 78
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.0012 Score=76.04 Aligned_cols=96 Identities=14% Similarity=0.091 Sum_probs=60.9
Q ss_pred CCcceEecCcccccchhhHHHHHHH----hCCCCCceeeeeeecCC-CeeeeccccccccccCccCCCCCcchhhHHHHH
Q 003751 466 ENITHSLCTLEFETRRASYFWLLHA----LGLYQPYVWEYSRLNVS-NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLR 540 (798)
Q Consensus 466 ~gITHviRG~E~~~~t~~q~~L~~a----Lg~~~P~~w~f~~Ln~~-g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lr 540 (798)
.|||-=-=|+||..+..+|.-.+.. +|+..|....|-...+. +.+||+++|+ ..|++...
T Consensus 228 lgVd~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~~YE~i~lkg~~~mSsSkG~---------------~i~~~dwl 292 (521)
T COG1384 228 LGVDFEPFGKDHAAAGGSYDTGKRIAREIFGYEPPVPFVYEWILLKGGGKMSSSKGN---------------VISLSDWL 292 (521)
T ss_pred cCcccccCCcccccccCchHHHHHHHHHhcCCCCCCCCceEEEEecCCcccccCCCc---------------EEcHHHHH
Confidence 4555555699999999999887764 46777765556554444 5999999998 36888888
Q ss_pred HCCCChHHHHHHHHHcCCCCCCccccHhh-HHHHHHHhh
Q 003751 541 RRGVTSTSINAFVQGIGISRSDSLIRLDR-LEYHIREEL 578 (798)
Q Consensus 541 rrG~~PeAI~~fl~~lG~s~~~~~~~~~~-Le~~ir~~~ 578 (798)
+- ++|+.++-|+.+--.++. ..+++.. |-.+..+|.
T Consensus 293 ev-~~pE~lry~~~r~kP~r~-~~~d~~~~il~lvDEyd 329 (521)
T COG1384 293 EV-APPEVLRYLIARTKPNRH-IDFDFDLGILKLVDEYD 329 (521)
T ss_pred Hh-cCHhHeeeeeeecCCCcc-eecCCCCChhHHHHHHH
Confidence 74 566666644443212221 2344444 444554443
No 79
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=97.56 E-value=0.0005 Score=76.19 Aligned_cols=189 Identities=19% Similarity=0.238 Sum_probs=110.0
Q ss_pred cHHHHHHhhhhcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC-------cccchHHHHHHHHHH
Q 003751 261 TKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN-------PEAEKKEYIDHIEEI 333 (798)
Q Consensus 261 ~~~~~~~hl~~~~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTD-------p~Re~~e~~~~I~ed 333 (798)
|.+-|.++++.. .+.+.=..=.|||.+||||+- ++.++......|..+++=|-|.- ...........+..+
T Consensus 17 ~~~el~~~l~~~-~~~~v~~G~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~ 94 (329)
T PRK08560 17 TEEELRELLESK-EEPKAYIGFEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKV 94 (329)
T ss_pred CHHHHHHHHhCC-CCCEEEEccCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHH
Confidence 467777777533 332222344677999999977 45666666655777777676652 123445666677888
Q ss_pred HHHcCCCCCc--ccCCchhHHH--HHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcc
Q 003751 334 VQWMGWEPFK--ITYTSDYFQE--LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRI 409 (798)
Q Consensus 334 L~wLGl~pd~--i~yqSd~~~~--~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~ 409 (798)
+..+|++|++ +.+||+.... |+..+-. ..|.++-.++...... + |+
T Consensus 95 ~~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~-------l~~~~~~~~l~r~~~~-~---------------------~~- 144 (329)
T PRK08560 95 FEALGLDPDKTEFVLGSEFQLDKEYWLLVLK-------LAKNTTLARARRSMTI-M---------------------GR- 144 (329)
T ss_pred HHHcCCChhheEEEecchhhccchHHHHHHH-------HHhhccHHHHHHhhhh-h---------------------cc-
Confidence 9999999974 6789886432 2222222 2456665555432100 0 00
Q ss_pred cCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHH
Q 003751 410 EEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLH 489 (798)
Q Consensus 410 ~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~ 489 (798)
. .++.+ .| --.||.-+-|.. .+.+.++++.|.|-..+-..-.-+.+
T Consensus 145 ---------~--~~~~~------------------~g--~l~YP~lqaaDi---l~~~ad~vpvG~DQ~~h~~l~Rdia~ 190 (329)
T PRK08560 145 ---------R--MEEPD------------------VS--KLVYPLMQVADI---FYLDVDIAVGGMDQRKIHMLAREVLP 190 (329)
T ss_pred ---------c--CCCCC------------------HH--HHHHHHHHHHHH---HHhCCCEEEechhHHHHHHHHHHhhH
Confidence 0 00000 00 012444333333 34578899999877666555555667
Q ss_pred HhCCCCCceeeeeee-cCCCe--eeeccc
Q 003751 490 ALGLYQPYVWEYSRL-NVSNT--VMSKRK 515 (798)
Q Consensus 490 aLg~~~P~~w~f~~L-n~~g~--KLSKR~ 515 (798)
.++...|.....+++ +.+|. ||||+.
T Consensus 191 ~~n~~~p~~l~~~~l~~L~g~~~KMSKS~ 219 (329)
T PRK08560 191 KLGYKKPVCIHTPLLTGLDGGGIKMSKSK 219 (329)
T ss_pred hcCCCCceEEEcCccCCCCCCCCCCcCCC
Confidence 788877765444443 67776 999998
No 80
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=97.50 E-value=0.00088 Score=74.35 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=57.2
Q ss_pred CCCCcCchhHHHHHHHHHHHHH-HcCCEEEEEeecCC------cccchHHHHHHHHHHHHHcCCCCCc--ccCCchhHHH
Q 003751 283 EPNGYLHIGHAKAMFVDFGLAK-ERGGYCYLRYDDTN------PEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQE 353 (798)
Q Consensus 283 sPtG~LHIGharaal~n~l~Ar-~~~G~~iLRidDTD------p~Re~~e~~~~I~edL~wLGl~pd~--i~yqSd~~~~ 353 (798)
.|||.+||||...++-+|..-. .++..+++=|-|.- ...+..++...+..++-.+|++|++ +.+||+.-+
T Consensus 11 qPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if~qS~v~~- 89 (332)
T PRK12556 11 KPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGLDPEDVIFYRQSDVPE- 89 (332)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheeecccceEEEECCCchH-
Confidence 5789999999999999986553 55655555555542 1122344455566777889999985 789999743
Q ss_pred HHHHHHHHHHcCCccccCCCHHHHH
Q 003751 354 LYELAVELIRRGHAYVDHQTPEEIK 378 (798)
Q Consensus 354 ~ye~a~~LI~~G~AY~C~cs~eel~ 378 (798)
..+.+- ...|.++-.++.
T Consensus 90 ~~eL~~-------il~~~t~~g~L~ 107 (332)
T PRK12556 90 IFELAW-------ILSCLTPKGLMN 107 (332)
T ss_pred HHHHHH-------HHHccchHHHHH
Confidence 333332 135666655554
No 81
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.0029 Score=72.55 Aligned_cols=164 Identities=23% Similarity=0.339 Sum_probs=123.0
Q ss_pred HHHHHH-HhcCCChhhHHHhhhCHHHHHHHHHHHHHcccCCCCchhhhHHHHHHHhhCCC-------CCCCchHHHHHHH
Q 003751 11 EILELF-LKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPT-------NALVHRPTLLLYI 82 (798)
Q Consensus 11 ~~~~~f-~~iGl~e~ka~e~~kn~~~~~~l~~~I~~a~~~~~~~~~~g~lly~la~~~~~-------~~~~~~~~~~~yI 82 (798)
+..+.| ...|||++-|.++++.+.+ .-+.++.+. ++. +.-....|++....+.. -...|...+.+.+
T Consensus 458 ek~~r~~~eygLs~~LA~~~~~~~~~-~~FEel~e~-~v~---p~~~A~~L~~~~~~L~reg~~i~~l~~~~i~~~~~~~ 532 (631)
T COG2511 458 EKVERYVKEYGLSKELAEQLASDPRV-DLFEELVEK-GVD---PTLIASTLVNTLPELRREGVEIDNLDDEHIEELLRLV 532 (631)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhhhhH-HHHHHHHHc-CCC---HHHHHHHHHHHHHHHHhcCCccccCCHHHHHHHHHHH
Confidence 444444 5589999999999998654 345454443 442 22234444444333321 2356788899999
Q ss_pred hcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhh
Q 003751 83 VSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKR 162 (798)
Q Consensus 83 ~~~~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~~RY~~n~g~l~~~~r~~ 162 (798)
.+|+|.- .++..+++++.+++ .-|.++.-+..|.. ..++|||+..|++++++|.+.+.+.+-.. +|.||+.+=+.
T Consensus 533 ~~g~iak-e~iee~l~~l~~~p--~~~~~e~~~~~gL~-~ls~eEve~iI~eii~~~~d~i~~rg~~a-~g~lmg~~M~~ 607 (631)
T COG2511 533 SEGKIAK-EAIEEILKALAENP--GKDAAEIAEKLGLK-ELSEEEVEKIIDEIIESNLDVIKERGMGA-MGLLMGRVMAK 607 (631)
T ss_pred hcccchH-HHHHHHHHHHHhCC--CCCHHHHHHHhccc-cCCHHHHHHHHHHHHHhhHHHHHHhchhh-HHHHHHHHHHH
Confidence 9999985 99999999998875 56888888888864 59999999999999999999888877776 89999985433
Q ss_pred -CCCCChhhHHHHHHHHHHHhcC
Q 003751 163 -LPWADPKIVKQLIDARMYELLG 184 (798)
Q Consensus 163 -lkwad~~~~k~~~d~~~l~lLg 184 (798)
=-=|||+.+...+.+.+.+.+|
T Consensus 608 ~rg~aDgk~v~e~lr~~i~e~~~ 630 (631)
T COG2511 608 LRGRADGKLVSEILREKLQEILG 630 (631)
T ss_pred hhccCCcHHHHHHHHHHHHHhhc
Confidence 3469999999999999888776
No 82
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=97.40 E-value=0.00033 Score=86.12 Aligned_cols=94 Identities=20% Similarity=0.179 Sum_probs=66.1
Q ss_pred eEEEe-CCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC-----------------cc------------cch
Q 003751 276 VLTRF-PPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN-----------------PE------------AEK 323 (798)
Q Consensus 276 v~tRF-aPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDTD-----------------p~------------Re~ 323 (798)
++.=. +|.|||.|||||+++.++.+.+||. ..|.-++.+-.+| +. .-.
T Consensus 40 f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~ 119 (800)
T PRK13208 40 YSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELT 119 (800)
T ss_pred EEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHH
Confidence 33344 8999999999999999999999984 4676666644444 22 123
Q ss_pred HHHHHHHHHHHHHcCCC--CCcccCCch--hHHHHHHHHHHHHHcCCccc
Q 003751 324 KEYIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 324 ~e~~~~I~edL~wLGl~--pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~ 369 (798)
.++.+.|.++++.||+. |+..+++++ |.........+|.++|++|.
T Consensus 120 ~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 169 (800)
T PRK13208 120 DEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYR 169 (800)
T ss_pred HHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeee
Confidence 46788999999999985 545444443 33333344568999999775
No 83
>PLN02563 aminoacyl-tRNA ligase
Probab=97.35 E-value=0.00053 Score=85.45 Aligned_cols=94 Identities=22% Similarity=0.334 Sum_probs=69.7
Q ss_pred eEEEeCCCCCCc-CchhHHHHHHHHHHHHH--HcCCEEEEEeecCCc----------------ccchHHHHHHHHHHHHH
Q 003751 276 VLTRFPPEPNGY-LHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP----------------EAEKKEYIDHIEEIVQW 336 (798)
Q Consensus 276 v~tRFaPsPtG~-LHIGharaal~n~l~Ar--~~~G~~iLRidDTDp----------------~Re~~e~~~~I~edL~w 336 (798)
+++=-+|.|||. |||||+++.++.+.+|| ...|.-+|.+--+|. .....++++.+.+.++.
T Consensus 113 ~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~ 192 (963)
T PLN02563 113 YVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKS 192 (963)
T ss_pred EEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHH
Confidence 566667999996 99999999999999999 456777777666661 12345788999999999
Q ss_pred cCC--CCCcccCCch--hHHHHHHHHHHHHHcCCccc
Q 003751 337 MGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 337 LGl--~pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~ 369 (798)
||+ +|+..+.+++ |....+....+|.++|++|.
T Consensus 193 lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~ 229 (963)
T PLN02563 193 LGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQ 229 (963)
T ss_pred hCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 995 5666555444 43333344568999999885
No 84
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.00019 Score=87.19 Aligned_cols=92 Identities=24% Similarity=0.361 Sum_probs=67.0
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCE---EEEEeecC-------------CcccchHHHHHHHHHHHHHc
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGY---CYLRYDDT-------------NPEAEKKEYIDHIEEIVQWM 337 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~---~iLRidDT-------------Dp~Re~~e~~~~I~edL~wL 337 (798)
+++=-=|-|||.||+||+|+..+.+.+||. ..|. |=+=+|-+ ||..-...+++.+.++|+.|
T Consensus 37 yvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~l 116 (814)
T COG0495 37 YVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSL 116 (814)
T ss_pred EEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHHh
Confidence 555556999999999999999999999983 3343 33344443 56666788999999999999
Q ss_pred CCC--CCcccCCchhHHHHHHHH----HHHHHcCCccc
Q 003751 338 GWE--PFKITYTSDYFQELYELA----VELIRRGHAYV 369 (798)
Q Consensus 338 Gl~--pd~i~yqSd~~~~~ye~a----~~LI~~G~AY~ 369 (798)
|+. |+....++| +.||.+. .+|-++|++|.
T Consensus 117 G~siDW~Ref~T~D--p~Yyk~~QW~F~kL~ekGL~y~ 152 (814)
T COG0495 117 GFSIDWRREFATCD--PEYYKWIQWQFLKLYEKGLAYR 152 (814)
T ss_pred CCccccccceecCC--ccHHHHHHHHHHHHHHCCCEEe
Confidence 986 555433444 1355554 48999999986
No 85
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=97.28 E-value=0.00058 Score=84.62 Aligned_cols=92 Identities=27% Similarity=0.308 Sum_probs=67.3
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCcc------------------c--------------ch
Q 003751 278 TRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE------------------A--------------EK 323 (798)
Q Consensus 278 tRFaPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDTDp~------------------R--------------e~ 323 (798)
+==||.+||.|||||+++.++.+.+|| ...|.-++.+-.+|.. + -.
T Consensus 38 ~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~ 117 (861)
T TIGR00422 38 DIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWK 117 (861)
T ss_pred EeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHH
Confidence 334899999999999999999999998 4578878877777721 0 03
Q ss_pred HHHHHHHHHHHHHcCCC--CCcccCCch--hHHHHHHHHHHHHHcCCccc
Q 003751 324 KEYIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 324 ~e~~~~I~edL~wLGl~--pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~ 369 (798)
.+|...|.++++.||+. |+..+++.+ |.........+|-++|+.|.
T Consensus 118 ~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~ 167 (861)
T TIGR00422 118 EESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYR 167 (861)
T ss_pred HHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeee
Confidence 56788899999999965 555555444 33333344568999999775
No 86
>PLN02943 aminoacyl-tRNA ligase
Probab=97.27 E-value=0.00066 Score=84.92 Aligned_cols=94 Identities=24% Similarity=0.329 Sum_probs=69.6
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCcc-----------------------cc--------
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE-----------------------AE-------- 322 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDTDp~-----------------------Re-------- 322 (798)
+++=-||.|||.||||||++..+-+.+|| ...|.-++.+-.+|.. |+
T Consensus 91 ~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~ 170 (958)
T PLN02943 91 VIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWE 170 (958)
T ss_pred EEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHH
Confidence 45555899999999999999999999998 4578878777777721 11
Q ss_pred -hHHHHHHHHHHHHHcCC--CCCcccCCch--hHHHHHHHHHHHHHcCCccc
Q 003751 323 -KKEYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 323 -~~e~~~~I~edL~wLGl--~pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~ 369 (798)
..++...|.+.++.||+ +|+..+++.+ |.........+|-++|+.|.
T Consensus 171 ~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr 222 (958)
T PLN02943 171 WKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQ 222 (958)
T ss_pred HHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 14667899999999998 5666655554 33333344568999999876
No 87
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=97.25 E-value=0.0006 Score=85.71 Aligned_cols=94 Identities=26% Similarity=0.275 Sum_probs=70.0
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCcc---------c-----------------------
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE---------A----------------------- 321 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDTDp~---------R----------------------- 321 (798)
+++==||.|||.||||||++..+.+.+|| ...|.-++.+-.+|.. +
T Consensus 63 ~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~ 142 (995)
T PTZ00419 63 VIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVW 142 (995)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHH
Confidence 44445899999999999999999999998 4567777777777721 1
Q ss_pred -chHHHHHHHHHHHHHcCCC--CCcccCC--chhHHHHHHHHHHHHHcCCccc
Q 003751 322 -EKKEYIDHIEEIVQWMGWE--PFKITYT--SDYFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 322 -e~~e~~~~I~edL~wLGl~--pd~i~yq--Sd~~~~~ye~a~~LI~~G~AY~ 369 (798)
-..++...|.++++.||+. |+..+++ .+|....+....+|.++|+.|.
T Consensus 143 ~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr 195 (995)
T PTZ00419 143 EWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYR 195 (995)
T ss_pred HHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 0256788899999999965 6565444 3454555566678999999876
No 88
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=97.23 E-value=0.00068 Score=84.04 Aligned_cols=95 Identities=22% Similarity=0.236 Sum_probs=67.9
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCcc---------------------------------
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE--------------------------------- 320 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDTDp~--------------------------------- 320 (798)
+++=-||.|||.|||||+++..+-+.+|| ...|..++..-..|..
T Consensus 39 ~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~ 118 (861)
T TIGR00392 39 IFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCR 118 (861)
T ss_pred EEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHH
Confidence 55556899999999999999999999998 3567666655444410
Q ss_pred cchHHHHHHHHHHHHHcCC--CCCcccCCch--hHHHHHHHHHHHHHcCCcccc
Q 003751 321 AEKKEYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYVD 370 (798)
Q Consensus 321 Re~~e~~~~I~edL~wLGl--~pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~C 370 (798)
.-..++.+.+.++++.||+ +|+..+.+.+ |.........+|.++|++|..
T Consensus 119 ~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliyr~ 172 (861)
T TIGR00392 119 EFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRG 172 (861)
T ss_pred HHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEeec
Confidence 1123568888999999999 6777665554 222222334589999999864
No 89
>PLN02843 isoleucyl-tRNA synthetase
Probab=97.17 E-value=0.00083 Score=84.16 Aligned_cols=94 Identities=24% Similarity=0.198 Sum_probs=65.2
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC-----------------------cccc-------h
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN-----------------------PEAE-------K 323 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDTD-----------------------p~Re-------~ 323 (798)
+++==||.+||.||||||.+..+-+.++|. ..|.-++.+--+| |... .
T Consensus 35 ~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~ 114 (974)
T PLN02843 35 TLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFA 114 (974)
T ss_pred EEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHH
Confidence 333448999999999999999999999984 4565555444444 2111 3
Q ss_pred HHHHHHHHHHHHHcCC--CCCcccCCch--hHHHHHHHHHHHHHcCCccc
Q 003751 324 KEYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 324 ~e~~~~I~edL~wLGl--~pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~ 369 (798)
.++.+.+.++++.||+ +|+..+++.+ |-........+|.++|+.|.
T Consensus 115 ~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr 164 (974)
T PLN02843 115 KKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYR 164 (974)
T ss_pred HHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 4567778999999999 7887665544 33333344568999999765
No 90
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=97.15 E-value=0.013 Score=67.03 Aligned_cols=98 Identities=10% Similarity=0.029 Sum_probs=58.2
Q ss_pred CcceEecCcccccchhhHHHHHHHhCCCCCceeeeeee-cCCCeeeeccccccccccCccCCCCCcc---hhhHHHHHHC
Q 003751 467 NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPC---LMTLAGLRRR 542 (798)
Q Consensus 467 gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~w~f~~L-n~~g~KLSKR~~~~lv~~g~v~gWdDPr---~~tl~~lrrr 542 (798)
+++.++-|.|=..+-..=.-|.+.++...|+....+.| +.+|+||||+.++. | |=|+- ...+......
T Consensus 186 ~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG~KMsKS~~na-I-------~L~d~~tsp~~i~qki~~ 257 (410)
T PRK13354 186 DVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADGTKMGKSAGGA-I-------WLDPEKTSPYEFYQFWMN 257 (410)
T ss_pred CCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCCCccCCCCCCc-e-------eccCCCCCHHHHHHHHHc
Confidence 67777778776666555555667778776744444554 78999999998753 1 22333 3445554443
Q ss_pred CCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhhh
Q 003751 543 GVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELN 579 (798)
Q Consensus 543 G~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~ 579 (798)
.+...+.+|+..+- ..+.+.++++.+.+..
T Consensus 258 -~~D~~v~~~l~~~t------~l~~~ei~~l~~~~~~ 287 (410)
T PRK13354 258 -IDDRDVVKYLKLFT------DLSPDEIDELEAQLET 287 (410)
T ss_pred -CChHHHHHHHHHHh------CCCHHHHHHHHHHHhc
Confidence 56666666766541 1233445555555543
No 91
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=97.14 E-value=0.00072 Score=85.28 Aligned_cols=94 Identities=23% Similarity=0.269 Sum_probs=68.1
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc---------c-----------------------
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE---------A----------------------- 321 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDTDp~---------R----------------------- 321 (798)
+++==||.|||.|||||+++.++-+.+||. ..|.-++.+-.+|.- +
T Consensus 51 ~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~ 130 (1052)
T PRK14900 51 SIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVW 130 (1052)
T ss_pred EEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHH
Confidence 344458999999999999999999999984 567777777666621 1
Q ss_pred -chHHHHHHHHHHHHHcCCC--CCcccC--CchhHHHHHHHHHHHHHcCCccc
Q 003751 322 -EKKEYIDHIEEIVQWMGWE--PFKITY--TSDYFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 322 -e~~e~~~~I~edL~wLGl~--pd~i~y--qSd~~~~~ye~a~~LI~~G~AY~ 369 (798)
-..++.+.|.++++.||+. |+..++ ..+|.........+|.++|+.|.
T Consensus 131 ~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr 183 (1052)
T PRK14900 131 AWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYR 183 (1052)
T ss_pred HHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 0245678889999999965 555444 33444444455678999999876
No 92
>TIGR00134 gatE_arch glutamyl-tRNA(Gln) amidotransferase, subunit E. The Archaea have an Asp-tRNA(Asn) amidotransferase instead of an Asp--tRNA ligase, but the genes have not been identified. It is likely that this protein replaces gatB in Asp-tRNA(Asn) amidotransferase but that both enzymes share gatA.
Probab=97.14 E-value=0.011 Score=70.50 Aligned_cols=161 Identities=20% Similarity=0.284 Sum_probs=116.9
Q ss_pred hhHHHHHHH-hcCCChhhHHHhhhCHHHHHHHHHHHHHcccCCCCchhhhHHHHHHHhhCCCC-------CCCchHHHHH
Q 003751 9 KSEILELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTN-------ALVHRPTLLL 80 (798)
Q Consensus 9 ~~~~~~~f~-~iGl~e~ka~e~~kn~~~~~~l~~~I~~a~~~~~~~~~~g~lly~la~~~~~~-------~~~~~~~~~~ 80 (798)
+++..+.|. ..||++.-|.-++.+. ...-+.+++...+. -++...+.|.+....++.. ...|...|+.
T Consensus 448 p~~~~~r~~~~ygls~~~A~~l~~~~-~~~~fe~~~~~~~~---~~~~~an~l~~~~~~l~~~~~~~~~~~~~~l~~l~~ 523 (620)
T TIGR00134 448 PEEKKERIMREYGLSEDLASQLVKSN-YVDEFEALTEKFRV---DPTVIASLLAYTLRELRREGHDIDGLELRHLRDAIK 523 (620)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHhch-HHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHHHH
Confidence 344455565 6899999999888885 56666666654432 2355555555544333221 1357888999
Q ss_pred HHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHH
Q 003751 81 YIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVR 160 (798)
Q Consensus 81 yI~~~~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~~RY~~n~g~l~~~~r 160 (798)
.|.+|+|.. .+....++.+..++ -+.++.-++.|... +|.++|++.|+++|++|.+.+.+.+-+ .+|.+||++.
T Consensus 524 ~~~~g~is~-~~~k~vl~~~~~~~---~~~~~iiee~gL~q-lsdeel~~iV~evI~en~~~V~~~~~k-~~G~lmGqVM 597 (620)
T TIGR00134 524 LLEVGKIAK-EGLREILKCMCDEP---LAAEDAARKLKLKL-LAEEEIESIIQEIIEENLDMISERGEG-AMGPLMGQAM 597 (620)
T ss_pred HHHcCCCcH-HHHHHHHHHHHhCC---CCHHHHHHHcCCcC-CCHHHHHHHHHHHHHhChHhhhccCHh-HHHHHHHHHH
Confidence 999999975 77788888776544 25677999999654 899999999999999998877775534 4899999987
Q ss_pred hhCCC-CChhhHHHHHHHHH
Q 003751 161 KRLPW-ADPKIVKQLIDARM 179 (798)
Q Consensus 161 ~~lkw-ad~~~~k~~~d~~~ 179 (798)
+.++= |||+.|.+.|.+.+
T Consensus 598 k~tkGkAdp~~V~~lLke~L 617 (620)
T TIGR00134 598 GRLRGKADGKVVNRILRKKL 617 (620)
T ss_pred HHhcCCCCHHHHHHHHHHHH
Confidence 76544 99999999887665
No 93
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=97.13 E-value=0.0012 Score=73.23 Aligned_cols=91 Identities=23% Similarity=0.248 Sum_probs=58.0
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC-------cccchHHHHHHHHHHHHHcCCCCCc--ccC
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN-------PEAEKKEYIDHIEEIVQWMGWEPFK--ITY 346 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTD-------p~Re~~e~~~~I~edL~wLGl~pd~--i~y 346 (798)
|.+=| .|||.+||||...++.++..-...+..+++ |-|.- ...+..++...+..++-.+|++|++ +++
T Consensus 5 v~sG~--~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~-IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~ 81 (333)
T PRK12282 5 ILTGD--RPTGKLHLGHYVGSLKNRVALQNEHEQFVL-IADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFI 81 (333)
T ss_pred EEEee--CCCCcchHHHHHHHHHHHHHHHhCCCEEEE-EccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEE
Confidence 44444 457999999999999999666655555444 43321 1223445556667778889999984 678
Q ss_pred CchhHHHHHHHHHHHHHcCCccccCCCHHHH
Q 003751 347 TSDYFQELYELAVELIRRGHAYVDHQTPEEI 377 (798)
Q Consensus 347 qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel 377 (798)
||+..+ +.+++. .+.|.++-.++
T Consensus 82 qS~~~e-~~~l~~-------~l~~~~~~~~l 104 (333)
T PRK12282 82 QSQIPE-LAELTM-------YYMNLVTVARL 104 (333)
T ss_pred CCcchH-HHHHHH-------HHHhhchHHHH
Confidence 999743 333321 25666665554
No 94
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.11 E-value=0.001 Score=83.00 Aligned_cols=94 Identities=22% Similarity=0.238 Sum_probs=67.1
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC----------------------ccc-------chH
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------------PEA-------EKK 324 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDTD----------------------p~R-------e~~ 324 (798)
+++==||.+||.||||||++.++.+.++|. ..|..++.+--.| ++. -..
T Consensus 52 ~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~ 131 (912)
T PRK05743 52 ILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYAL 131 (912)
T ss_pred EEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHH
Confidence 344448999999999999999999999984 4566655444443 221 234
Q ss_pred HHHHHHHHHHHHcCC--CCCcccCCch--hHHHHHHHHHHHHHcCCccc
Q 003751 325 EYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 325 e~~~~I~edL~wLGl--~pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~ 369 (798)
++.+.+.++++.||+ +|+..+++.+ |-........+|.++|+.|.
T Consensus 132 ~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~ 180 (912)
T PRK05743 132 EQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYK 180 (912)
T ss_pred HHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 567888999999999 7887655544 33334445568999999776
No 95
>PLN02381 valyl-tRNA synthetase
Probab=97.09 E-value=0.0011 Score=83.65 Aligned_cols=95 Identities=27% Similarity=0.337 Sum_probs=68.3
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc---------c-----------------------
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE---------A----------------------- 321 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDTDp~---------R----------------------- 321 (798)
+++==||.+||.||||||++..+.+.+||. ..|.-++.+--+|.. +
T Consensus 131 ~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~ 210 (1066)
T PLN02381 131 VIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVW 210 (1066)
T ss_pred EEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHH
Confidence 445559999999999999999999999984 567777766666621 0
Q ss_pred -chHHHHHHHHHHHHHcCC--CCCcccCCch--hHHHHHHHHHHHHHcCCcccc
Q 003751 322 -EKKEYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYVD 370 (798)
Q Consensus 322 -e~~e~~~~I~edL~wLGl--~pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~C 370 (798)
-..++...|.+.++.||+ +|+..+++.+ |.........+|.++|+.|..
T Consensus 211 ~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 264 (1066)
T PLN02381 211 KWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRD 264 (1066)
T ss_pred HHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 024567888899999996 4666665554 333333445689999998763
No 96
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=97.06 E-value=0.0011 Score=82.21 Aligned_cols=89 Identities=27% Similarity=0.338 Sum_probs=66.5
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCcc------------------cc--------------hHHH
Q 003751 281 PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE------------------AE--------------KKEY 326 (798)
Q Consensus 281 aPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDTDp~------------------Re--------------~~e~ 326 (798)
||.+||.||||||++..+-+.+|| ...|.-+|.+-.+|.. +. ..++
T Consensus 44 pP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~ 123 (874)
T PRK05729 44 PPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEES 123 (874)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999998 4567777777777721 00 3567
Q ss_pred HHHHHHHHHHcCCC--CCcccCCch--hHHHHHHHHHHHHHcCCccc
Q 003751 327 IDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 327 ~~~I~edL~wLGl~--pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~ 369 (798)
...|.++++.||+. |+..+++.+ |.........+|.++|+.|.
T Consensus 124 ~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr 170 (874)
T PRK05729 124 GGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYR 170 (874)
T ss_pred HHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEee
Confidence 88999999999975 555555444 33333445568999999775
No 97
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=97.06 E-value=0.0014 Score=78.11 Aligned_cols=92 Identities=25% Similarity=0.291 Sum_probs=60.9
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCc---c------------------------------cc
Q 003751 278 TRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP---E------------------------------AE 322 (798)
Q Consensus 278 tRFaPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDTDp---~------------------------------Re 322 (798)
+==||.+||.||+||+++..+-..+|| ...|..++..=-.|. + .-
T Consensus 28 ~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~~~ 107 (601)
T PF00133_consen 28 HDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREECREW 107 (601)
T ss_dssp EE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHHHH
T ss_pred EeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhhhcch
Confidence 334899999999999999999999998 346665555444431 0 01
Q ss_pred hHHHHHHHHHHHHHcCC--CCCcccCC--chhHHHHHHHHHHHHHcCCccc
Q 003751 323 KKEYIDHIEEIVQWMGW--EPFKITYT--SDYFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 323 ~~e~~~~I~edL~wLGl--~pd~i~yq--Sd~~~~~ye~a~~LI~~G~AY~ 369 (798)
..++.+.+.++++.||+ +|+..+++ .+|-........+|.++|+.|.
T Consensus 108 ~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr 158 (601)
T PF00133_consen 108 AEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYR 158 (601)
T ss_dssp HHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEE
T ss_pred hhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEe
Confidence 34677888999999997 46665443 3444444455678999999986
No 98
>PLN02486 aminoacyl-tRNA ligase
Probab=97.00 E-value=0.0084 Score=67.87 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=50.6
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHcCCEEEEEeecC----C---cccchHHHHHHHHHHHHHcCCCCCc--ccCCchhHH
Q 003751 283 EPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----N---PEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 352 (798)
Q Consensus 283 sPtG-~LHIGharaal~n~l~Ar~~~G~~iLRidDT----D---p~Re~~e~~~~I~edL~wLGl~pd~--i~yqSd~~~ 352 (798)
.||| .|||||+..+.+.-.+-+..|..+++=|.|- . ...+..++......++..+|++|++ +..+++++.
T Consensus 81 ~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~~~ 160 (383)
T PLN02486 81 GPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYVG 160 (383)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHHHh
Confidence 7888 5999999988865555556567777767761 1 1122334555667778889999974 556666663
Q ss_pred -HHHHHHHH
Q 003751 353 -ELYELAVE 360 (798)
Q Consensus 353 -~~ye~a~~ 360 (798)
.+|..+.+
T Consensus 161 ~~~~~~~~~ 169 (383)
T PLN02486 161 GAFYKNMVK 169 (383)
T ss_pred HhHHHHHHH
Confidence 34444444
No 99
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=96.99 E-value=0.0015 Score=83.10 Aligned_cols=90 Identities=19% Similarity=0.205 Sum_probs=68.3
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc---------c------------------------chH
Q 003751 280 FPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE---------A------------------------EKK 324 (798)
Q Consensus 280 FaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDTDp~---------R------------------------e~~ 324 (798)
=||.+||.||||||.+..+-+.++|. ..|.-+++.-.+|.. + ...
T Consensus 109 gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~ 188 (1205)
T PTZ00427 109 GPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVL 188 (1205)
T ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHH
Confidence 38999999999999999999999984 578888887777720 0 123
Q ss_pred HHHHHHHHHHHHcC--CCCCcccCCch--hHHHHHHHHHHHHHcCCccc
Q 003751 325 EYIDHIEEIVQWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 325 e~~~~I~edL~wLG--l~pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~ 369 (798)
+|.+.+.+.++.|| ++|+..+++.+ |.........+|.++|+.|.
T Consensus 189 ~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr 237 (1205)
T PTZ00427 189 KYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYK 237 (1205)
T ss_pred HHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 56778899999999 78887666554 44444445568999999775
No 100
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=96.91 E-value=0.0019 Score=81.07 Aligned_cols=93 Identities=23% Similarity=0.271 Sum_probs=67.2
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCc-----------------c----------------c
Q 003751 277 LTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP-----------------E----------------A 321 (798)
Q Consensus 277 ~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDTDp-----------------~----------------R 321 (798)
++==||.|||.||+||+++..+-+.+||. ..|.-+++.=..|. . .
T Consensus 45 i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~ 124 (975)
T PRK06039 45 FYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRE 124 (975)
T ss_pred EeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHH
Confidence 33348999999999999999999999984 56777776655551 0 1
Q ss_pred chHHHHHHHHHHHHHcC--CCCCcccCCch--hHHHHHHHHHHHHHcCCccc
Q 003751 322 EKKEYIDHIEEIVQWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 322 e~~e~~~~I~edL~wLG--l~pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~ 369 (798)
...++.+.+.+.++.|| ++|+..+++.+ |.........+|.++|+.|.
T Consensus 125 ~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr 176 (975)
T PRK06039 125 SVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYK 176 (975)
T ss_pred HHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 23467888899999999 56777665555 33333333458999999876
No 101
>PLN02882 aminoacyl-tRNA ligase
Probab=96.91 E-value=0.0021 Score=81.76 Aligned_cols=89 Identities=20% Similarity=0.192 Sum_probs=67.0
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc----------------c-----------------chHH
Q 003751 281 PPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE----------------A-----------------EKKE 325 (798)
Q Consensus 281 aPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDTDp~----------------R-----------------e~~e 325 (798)
||.+||.|||||+++..+-+.+||. ..|.-+++.-.+|.- + ...+
T Consensus 46 PPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~ 125 (1159)
T PLN02882 46 PPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTR 125 (1159)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHH
Confidence 8999999999999999999999984 567777777666610 0 1346
Q ss_pred HHHHHHHHHHHcC--CCCCcccCCch--hHHHHHHHHHHHHHcCCccc
Q 003751 326 YIDHIEEIVQWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 326 ~~~~I~edL~wLG--l~pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~ 369 (798)
|.+.+.+.++.|| ++|+..+++.+ |.........+|.++|+.|.
T Consensus 126 ~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr 173 (1159)
T PLN02882 126 YSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYK 173 (1159)
T ss_pred HHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 7788889999999 77887665554 43344445568999999765
No 102
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=96.90 E-value=0.0015 Score=81.69 Aligned_cols=94 Identities=23% Similarity=0.174 Sum_probs=60.8
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEE---eecCC--------------------------------
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLR---YDDTN-------------------------------- 318 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLR---idDTD-------------------------------- 318 (798)
+++==+|.|||.|||||+++..+...+||. ..|.-+|. +|.+-
T Consensus 28 ~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~i~~~~i 107 (938)
T TIGR00395 28 FLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREEL 107 (938)
T ss_pred EEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhhccccchhhccCCHHHH
Confidence 444448999999999999999999999883 34544433 22221
Q ss_pred -----cccchHHHHHHHHHHHHHcCCC--CCcccCCch--hHHHHHHHHHHHHHcCCccc
Q 003751 319 -----PEAEKKEYIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 319 -----p~Re~~e~~~~I~edL~wLGl~--pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~ 369 (798)
|..-...|...|.++++.||+. |+..+.+.+ |-........+|-++|+.|.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~ 167 (938)
T TIGR00395 108 LKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVK 167 (938)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHHHCCCEec
Confidence 1111245567889999999986 555544444 22222233458999999875
No 103
>PRK04028 glutamyl-tRNA(Gln) amidotransferase subunit E; Validated
Probab=96.88 E-value=0.021 Score=68.17 Aligned_cols=166 Identities=20% Similarity=0.281 Sum_probs=119.1
Q ss_pred hhHHHHHHH-hcCCChhhHHHhhhCHHHHHHHHHHHHHcccCCCCchhhhHHHHHHHhhCCCC-------CCCchHHHHH
Q 003751 9 KSEILELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTN-------ALVHRPTLLL 80 (798)
Q Consensus 9 ~~~~~~~f~-~iGl~e~ka~e~~kn~~~~~~l~~~I~~a~~~~~~~~~~g~lly~la~~~~~~-------~~~~~~~~~~ 80 (798)
+++..+.|. ..||++.-|.-++.++. ..-+.+++.. . .-++...+.|.+....+... ...+...|+.
T Consensus 455 p~~~~~r~~~~ygls~~~a~~L~~~~~-~~~f~~~~~~-~---~~~~~~anwl~~~~~~l~~~~~~~~~i~~~~l~~l~~ 529 (630)
T PRK04028 455 PEEKVERLIKEYGLSEELAEQLAYSER-LDLFEELVKK-G---VDPTLIASTLENTLKELRREGVDVENITDEHIEEVFK 529 (630)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCch-HHHHHHHHHh-C---CCHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHHHH
Confidence 344566665 48999999987777765 6666665543 2 12466667666655433321 2356788899
Q ss_pred HHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHH
Q 003751 81 YIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVR 160 (798)
Q Consensus 81 yI~~~~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~~RY~~n~g~l~~~~r 160 (798)
.|.+|+|.. .+....+.-+-+. ..-+.++.-++.|.. .+|.++|++.|+++|++|.+.+.+.+ .-.+|.+||+|.
T Consensus 530 ~~~~~~is~-~~ak~v~~~~~~~--~~~~~~~IIee~gl~-qiSD~eL~~iV~evIaenpk~V~~gk-~K~~G~lmGqVM 604 (630)
T PRK04028 530 LVSEGKIAK-EAIEEILKELAEN--PGKSAEEAAEELGLK-GLSEEEVEKIIDEIVEENIDFVKEKG-MGAFGPLMGEVM 604 (630)
T ss_pred HHHcCCccH-HHHHHHHHHHHhc--CCCCHHHHHHHhCcc-cCCHHHHHHHHHHHHHhChHhHhccC-HhHHHHHHHHHH
Confidence 999999986 6667777755443 246789999999976 57999999999999999977665533 345899999987
Q ss_pred hhCC-CCChhhHHHHHHHHHHHhcC
Q 003751 161 KRLP-WADPKIVKQLIDARMYELLG 184 (798)
Q Consensus 161 ~~lk-wad~~~~k~~~d~~~l~lLg 184 (798)
+..+ =|||+.|.+.|...+-+.+|
T Consensus 605 k~tkGkAdp~~V~~llke~L~~~~~ 629 (630)
T PRK04028 605 AELRGKADGKLVSEILREKLKEILN 629 (630)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHhc
Confidence 7644 49999999999888766654
No 104
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=96.87 E-value=0.017 Score=65.94 Aligned_cols=88 Identities=20% Similarity=0.298 Sum_probs=55.7
Q ss_pred HHHHHHhhhhcCCeeEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEEeec----C-Ccc-c----------chH
Q 003751 262 KEVLDKHLEVTGGNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDD----T-NPE-A----------EKK 324 (798)
Q Consensus 262 ~~~~~~hl~~~~g~v~tRFaPsPtG~-LHIGharaal~n~l~Ar~~~G~~iLRidD----T-Dp~-R----------e~~ 324 (798)
.+-+.++++...-.+.+=| .|||. |||||+.+ +.++..-...|...++=|-| | ||. + +..
T Consensus 22 ~~~l~~~l~~~~~~vy~G~--dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~ 98 (408)
T PRK05912 22 EEELEEKLAKEPLRIYLGF--DPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVA 98 (408)
T ss_pred HHHHHHHhhCCCCEEEEee--cCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHH
Confidence 6667777763222333444 57785 99999994 56666666666666666655 2 443 1 234
Q ss_pred HHHHHHHHHHHHcCCCCCc----ccCCchhHHH
Q 003751 325 EYIDHIEEIVQWMGWEPFK----ITYTSDYFQE 353 (798)
Q Consensus 325 e~~~~I~edL~wLGl~pd~----i~yqSd~~~~ 353 (798)
.+.+.|.+.+ +.|++|++ +.+||+.+..
T Consensus 99 ~n~~~i~~ql-~~~ld~~k~~~~i~~nsd~~~~ 130 (408)
T PRK05912 99 ENAETIKEQL-FKFLDFEKDGAEIVNNSDWLGK 130 (408)
T ss_pred HHHHHHHHHH-HHhcCcCcCcEEEEECCCcCCc
Confidence 4555665555 78898875 7889987653
No 105
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.84 E-value=0.0054 Score=66.41 Aligned_cols=172 Identities=15% Similarity=0.158 Sum_probs=97.7
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Cc-----------ccchHHHHHHHHHHHHHcCCC--CCc
Q 003751 283 EPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NP-----------EAEKKEYIDHIEEIVQWMGWE--PFK 343 (798)
Q Consensus 283 sPtG-~LHIGharaal~n~l~Ar~~~G~~iLRidDT-----Dp-----------~Re~~e~~~~I~edL~wLGl~--pd~ 343 (798)
.||| .|||||+.. +.++..-...|..+++=|-|- || ..+..+....|..++..+|++ |++
T Consensus 7 ~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~d~~p~k 85 (273)
T cd00395 7 DPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGIFEDPTQ 85 (273)
T ss_pred cCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcCcCCCcc
Confidence 5889 799999988 666665555555544433321 33 223445667788889999998 763
Q ss_pred --ccCCchhHH--HHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEE
Q 003751 344 --ITYTSDYFQ--ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMK 419 (798)
Q Consensus 344 --i~yqSd~~~--~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K 419 (798)
+..||+.+. .+++.+..| -|+.+-.++...- + |.+ |+.
T Consensus 86 ~~i~~ns~~~~~~~~~~l~~~l-------~~~~~~~~l~~~~-----------~-------~k~-------------r~~ 127 (273)
T cd00395 86 ATLFNNSDWPGPLAHIQFLRDL-------GKHVYVNYMERKT-----------S-------FQS-------------RSE 127 (273)
T ss_pred eEEEEccccCCcccHHHHHHHH-------HccCcHHHHHhCh-----------H-------HHH-------------Hhc
Confidence 788998764 344544433 3455555554220 0 100 000
Q ss_pred ecCCCCCCCcCccEEEEEecCCCCCCCCccccccc---ccccceeeccCCCcceEecCcccccchhhHHHHHHHhC-CCC
Q 003751 420 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPS---YDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG-LYQ 495 (798)
Q Consensus 420 ~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PT---Y~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg-~~~ 495 (798)
+ ...+ -.+ .||. ||+-+. ..-.+.++++.|.|=..+-..=.-|.+.++ ...
T Consensus 128 -~----~~~~-~~~-----------------~Yp~lQaaD~l~l--~~~~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~ 182 (273)
T cd00395 128 -E----GISA-TEF-----------------TYPPLQAADFLLL--NTTEGCDIQPGGSDQWGNITLGRELARRFNGFTI 182 (273)
T ss_pred -C----CCCc-hhh-----------------hhHHHHHHHHHHH--hcccCCcEEEecHHHHHHHHHHHHHHHHhCCCCC
Confidence 0 0000 000 1221 111110 011456888888877766655555667775 566
Q ss_pred Cceeeeeee-cCCCeeeecccccc
Q 003751 496 PYVWEYSRL-NVSNTVMSKRKLNF 518 (798)
Q Consensus 496 P~~w~f~~L-n~~g~KLSKR~~~~ 518 (798)
|.....++| +.+|.||||+.++.
T Consensus 183 p~~l~~p~l~~l~G~KMSKS~~~~ 206 (273)
T cd00395 183 AEGLTIPLVTKLDGPKFGKSESGP 206 (273)
T ss_pred CeEEeeccccCCCCCcCCCCCCCC
Confidence 765555664 78999999999764
No 106
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.0034 Score=76.65 Aligned_cols=90 Identities=28% Similarity=0.317 Sum_probs=67.8
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc-----------------------cc---------hHH
Q 003751 280 FPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE-----------------------AE---------KKE 325 (798)
Q Consensus 280 FaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDTDp~-----------------------Re---------~~e 325 (798)
=||++||-||||||....+-+.++|. ..|.-+|=+-.||.. |+ .++
T Consensus 40 PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e 119 (877)
T COG0525 40 PPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEE 119 (877)
T ss_pred CCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Confidence 38999999999999999998999984 467666666666521 22 467
Q ss_pred HHHHHHHHHHHcCCC--CCcccC--CchhHHHHHHHHHHHHHcCCccc
Q 003751 326 YIDHIEEIVQWMGWE--PFKITY--TSDYFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 326 ~~~~I~edL~wLGl~--pd~i~y--qSd~~~~~ye~a~~LI~~G~AY~ 369 (798)
+...|.+.++.||+. |+..++ .-.+.....+...+|-++|..|.
T Consensus 120 ~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr 167 (877)
T COG0525 120 SGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYR 167 (877)
T ss_pred HHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceee
Confidence 889999999999987 444433 33455556667789999999997
No 107
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=96.78 E-value=0.0024 Score=70.97 Aligned_cols=73 Identities=23% Similarity=0.301 Sum_probs=46.7
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC----Cc--ccchHHHHHHHHHHHHHcCCCCCc--ccCCchhHHHH
Q 003751 283 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NP--EAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQEL 354 (798)
Q Consensus 283 sPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDT----Dp--~Re~~e~~~~I~edL~wLGl~pd~--i~yqSd~~~~~ 354 (798)
.|||.|||||...++-+|..-... ..+++=|-|. ++ ..+..+....+..++-.+|++|++ +.+||+..+ +
T Consensus 9 ~PTG~lHLG~~~g~~~~~~~lQ~~-~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS~~~~-~ 86 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKNWVELQDE-YECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQSHVPE-H 86 (333)
T ss_pred CCCccchHHhHHHHHHHHHHHHhc-CCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEeCCCch-h
Confidence 588999999999777777544332 3444444443 21 223445555667777889999984 788998533 4
Q ss_pred HHH
Q 003751 355 YEL 357 (798)
Q Consensus 355 ye~ 357 (798)
.++
T Consensus 87 ~el 89 (333)
T PRK00927 87 AEL 89 (333)
T ss_pred HHH
Confidence 443
No 108
>PRK05477 gatB aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated
Probab=96.68 E-value=0.042 Score=63.84 Aligned_cols=161 Identities=19% Similarity=0.237 Sum_probs=114.3
Q ss_pred hHHHHHHH-hcCCChhhHHHhhhCHHHHHHHHHHHHHcccCCCCchhhhHHHHH-HHhhCCC---------CCCCchHHH
Q 003751 10 SEILELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT-VATKYPT---------NALVHRPTL 78 (798)
Q Consensus 10 ~~~~~~f~-~iGl~e~ka~e~~kn~~~~~~l~~~I~~a~~~~~~~~~~g~lly~-la~~~~~---------~~~~~~~~~ 78 (798)
++..+.|. ..||++.-|.-++.++.++.-+.+++.. +. .++...+.|.+ +...++. -...+...|
T Consensus 299 ~~~~~rl~~~ygls~~~a~~L~~~~~~~~~fe~~~~~-~~---~~k~~anwl~~el~~~l~~~~~~~~~~~i~~~~l~~L 374 (474)
T PRK05477 299 DAKRARFVEEYGLSEYDARVLTSDKELADYFEAVVAA-GA---DAKLAANWLMGELLGLLNEEGIEIEESPITPEQLAEL 374 (474)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHc-CC---CHHHHHHHHHHHHHHHHHHCCCChhhcCCCHHHHHHH
Confidence 44456665 5899999999999998999888887654 22 23555554443 4332221 123578889
Q ss_pred HHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhc--cccchhhhH
Q 003751 79 LLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELR--YRTNVGDLF 156 (798)
Q Consensus 79 ~~yI~~~~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~~R--Y~~n~g~l~ 156 (798)
+..|.+|+|.+ .+....+.-+... .-+.++.-++.|.+.+-.+++|++.|+++|++|.+.+.+-| -.-.+|-||
T Consensus 375 i~lv~~g~Is~-~~ak~vl~~~~~~---~~~~~~ii~~~gl~~isd~~~l~~iv~evi~~np~~v~~~~~Gk~~~~~~lv 450 (474)
T PRK05477 375 IKLIDDGTISG-KIAKEVFEEMLET---GGDPDEIVEEKGLKQISDEGALEAIVDEVLAANPKAVEDYKAGKEKALGFLV 450 (474)
T ss_pred HHHHHcCCccH-HHHHHHHHHHHhc---CCCHHHHHHHcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHHHHHHHH
Confidence 99999999986 5667777755543 36799999999987644444999999999999999877642 122377788
Q ss_pred HHHHhh-CCCCChhhHHHHHHHH
Q 003751 157 AHVRKR-LPWADPKIVKQLIDAR 178 (798)
Q Consensus 157 ~~~r~~-lkwad~~~~k~~~d~~ 178 (798)
|++-+. =--|||+.|.+.|.+.
T Consensus 451 G~vMk~t~GkAdp~~v~~ll~e~ 473 (474)
T PRK05477 451 GQVMKATKGKANPKLVNELLKEK 473 (474)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHh
Confidence 887443 4569999999888653
No 109
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=96.67 E-value=0.032 Score=63.33 Aligned_cols=92 Identities=15% Similarity=0.146 Sum_probs=52.6
Q ss_pred cHHHHHHhhhhcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Cc----ccchHHHHHHHH
Q 003751 261 TKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NP----EAEKKEYIDHIE 331 (798)
Q Consensus 261 ~~~~~~~hl~~~~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDT-----Dp----~Re~~e~~~~I~ 331 (798)
|.+-|.+.|+. +...+.=..=.|||.+||||...-.++|..-...|..+++=|-|. |+ ..........+.
T Consensus 53 ~~eel~~~l~~-~~~~~v~~G~~PTG~lHLG~g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~ 131 (383)
T PTZ00126 53 QPEELRELLKL-KERPICYDGFEPSGRMHIAQGILKAINVNKLTKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFI 131 (383)
T ss_pred CHHHHHHHHhc-CCCCEEEEEECCCCcccccchHhHhHHHHHHHhCCCeEEEEEccceeecCCCCCCCHHHHHHHHHHHH
Confidence 46666666643 232233333467899999993211122322234466666656554 22 122344555566
Q ss_pred HHHHHcCCCCC--cccCCchhHHH
Q 003751 332 EIVQWMGWEPF--KITYTSDYFQE 353 (798)
Q Consensus 332 edL~wLGl~pd--~i~yqSd~~~~ 353 (798)
.++..+|++|+ .+.+||+++..
T Consensus 132 ~~~~A~GlDp~k~~i~~qS~~v~~ 155 (383)
T PTZ00126 132 EVWKAAGMDMDNVRFLWASEEINK 155 (383)
T ss_pred HHHHHhCCCccceEEEECChhhhh
Confidence 77889999998 47899986543
No 110
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=96.62 E-value=0.037 Score=67.65 Aligned_cols=159 Identities=16% Similarity=0.269 Sum_probs=113.4
Q ss_pred HHHHH-hcCCChhhHHHhhhCHHHHHHHHHHHHHcccCCCCchhhhHH-HHHHHhhCCCC-------CCCchHHHHHHHh
Q 003751 13 LELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNL-LYTVATKYPTN-------ALVHRPTLLLYIV 83 (798)
Q Consensus 13 ~~~f~-~iGl~e~ka~e~~kn~~~~~~l~~~I~~a~~~~~~~~~~g~l-ly~la~~~~~~-------~~~~~~~~~~yI~ 83 (798)
.+.|. ..||++.-|.-++.++.++.-+.+++... . -++...+. +..|...++.. ...+...|+..|.
T Consensus 600 ~~Rlv~eyGLs~~dA~~L~~d~~la~yFE~~v~~~-~---~pk~aANWl~~El~~~Lne~~i~~~~l~pe~LaeLv~lV~ 675 (771)
T PRK14703 600 FDRYLSELGLNEEDARTLARDPALAAFFEAALAAG-K---SPVQLANWVVNDLAGLLRDRELAALPFTPAALARLVALVD 675 (771)
T ss_pred HHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHcC-C---CHHHHHHHHHHHHHHHHhcCCCccCCCCHHHHHHHHHHHH
Confidence 44454 58999999999999999998888887542 1 12334333 33344333322 2367899999999
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhc--cccchhhhHHHHHh
Q 003751 84 SSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELR--YRTNVGDLFAHVRK 161 (798)
Q Consensus 84 ~~~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~~R--Y~~n~g~l~~~~r~ 161 (798)
+|+|.. .+....|+-+-.. .-+.++.-++.|.+.+-..++|++.|+++|++|.+.+.+-| -.--+|-|||+|-+
T Consensus 676 ~g~IS~-~~AK~VL~~m~~~---~~~p~~IIee~GL~qisDe~~Le~iV~eVI~~NP~~Ve~yk~GK~kalgfLVGqVMK 751 (771)
T PRK14703 676 AGRIST-RIAKDVLAELAAS---GGDPEAIVEAKGLEQVSDAGALEPIVEEVLAAHPDKVAAYRAGKTKLLGFFVGQVMR 751 (771)
T ss_pred cCCccH-HHHHHHHHHHHhc---CCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999975 6667777766543 24788999999998765668999999999999999887655 11236677777644
Q ss_pred hC-CCCChhhHHHHHHHHH
Q 003751 162 RL-PWADPKIVKQLIDARM 179 (798)
Q Consensus 162 ~l-kwad~~~~k~~~d~~~ 179 (798)
.. -=|||+.|.+.|.+.+
T Consensus 752 ~tkGKAdP~~V~elLke~L 770 (771)
T PRK14703 752 ETGGKANPQQVRELLQKKL 770 (771)
T ss_pred HhCCCCCHHHHHHHHHHHh
Confidence 43 3489999998887653
No 111
>PLN02751 glutamyl-tRNA(Gln) amidotransferase
Probab=96.59 E-value=0.054 Score=63.77 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=113.5
Q ss_pred hHHHHHHHhcCCChhhHHHhhhCHHHHHHHHHHHHHcccCCCCchhhhHH-HHHHHhhCCC---------CCCCchHHHH
Q 003751 10 SEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNL-LYTVATKYPT---------NALVHRPTLL 79 (798)
Q Consensus 10 ~~~~~~f~~iGl~e~ka~e~~kn~~~~~~l~~~I~~a~~~~~~~~~~g~l-ly~la~~~~~---------~~~~~~~~~~ 79 (798)
++..+.|...||++.-|.-++.++.++.-+.+++.. +. -++...+. +..|...++. -...+...|+
T Consensus 367 ~~~~~Rl~~~gLs~~dA~~L~~~~~~a~ffe~~~~~-~~---~~k~~anwi~~el~~~l~~~~~~i~~~~l~p~~laeLi 442 (544)
T PLN02751 367 EAKRRRYENMGLSMQDVLFLANDKNVAEFFDATLAK-GA---DAKLAANWIMGDIAAYLKNEKVSISEIKLTPKELAELI 442 (544)
T ss_pred HHHHHHHHHcCCCHHHHHHHHcCcHHHHHHHHHHHc-CC---CHHHHHHHHHHHHHHHHHhCCCChhhcCCCHHHHHHHH
Confidence 344666788999999999999999988888887764 21 23444443 3333222221 1235789999
Q ss_pred HHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhc---cccchhhhH
Q 003751 80 LYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELR---YRTNVGDLF 156 (798)
Q Consensus 80 ~yI~~~~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~~R---Y~~n~g~l~ 156 (798)
..|.+|+|... +-...+.=+-. ..-+.+++-++-|....-.+++|++.|+++|++|.+.+.+-| -+. +|-||
T Consensus 443 ~li~~g~Is~~-~AK~vl~~~~~---~~~~p~~iiee~gL~qisD~~~l~~iv~evi~~np~~V~~~k~Gk~k~-~g~lv 517 (544)
T PLN02751 443 ASIKDGTISGK-IGKEILPELLA---KGGTVKGLVEEKGLVQISDPAEIEAMVDKVLEENPKQLEQYRGGKTKL-QGFFA 517 (544)
T ss_pred HHHHcCCccHH-HHHHHHHHHHh---CCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHHH-HHHHH
Confidence 99999999874 44555554433 235789999999988644488999999999999999887654 233 67777
Q ss_pred HHHHhhCC-CCChhhHHHHHHHHH
Q 003751 157 AHVRKRLP-WADPKIVKQLIDARM 179 (798)
Q Consensus 157 ~~~r~~lk-wad~~~~k~~~d~~~ 179 (798)
|++-+..+ =|||+.|.+.|.+.+
T Consensus 518 GqVMK~tkGkAnp~~v~~iL~e~L 541 (544)
T PLN02751 518 GQVMKASKGKANPGLLNKILMEKL 541 (544)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHh
Confidence 77755433 589999998887654
No 112
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=96.55 E-value=0.0034 Score=68.18 Aligned_cols=177 Identities=17% Similarity=0.175 Sum_probs=101.8
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc----cchHHHHHHHHHH--HHHcCCCCC--cccCCch
Q 003751 283 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE----AEKKEYIDHIEEI--VQWMGWEPF--KITYTSD 349 (798)
Q Consensus 283 sPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDT-----Dp~----Re~~e~~~~I~ed--L~wLGl~pd--~i~yqSd 349 (798)
.|||.|||||+.++ .++......|...++=|-|. |+. |........+.++ +-.+|++|+ .+..||+
T Consensus 13 ~PTg~lHlG~l~~~-~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~k~~i~~~s~ 91 (292)
T PF00579_consen 13 DPTGDLHLGHLVPI-MKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPEKTEIFRQSD 91 (292)
T ss_dssp ESSSS-BHHHHHHH-HHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTTTEEEEEGHH
T ss_pred CCCCcccchHHHHH-HHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCccceEEEeCCC
Confidence 57899999999876 45555555888888877665 333 4445555555666 778999997 4788998
Q ss_pred hHHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCCc
Q 003751 350 YFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNM 429 (798)
Q Consensus 350 ~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~ 429 (798)
..... ++...|...+ +.-++.... .+..+.. |++. .....+
T Consensus 92 ~~~~~-~~~~~l~~~~-------~~~~l~~~~------------------~~~~~~~----------~~~~---~~~~~~ 132 (292)
T PF00579_consen 92 WPEHM-ELWWFLSDVA-------RLFSLNRML------------------RFKDVKK----------RLKN---GEGISL 132 (292)
T ss_dssp HHCHH-HHHHHHHHHH-------BHHHHHHHH------------------HHHHHHH----------HHSS---TTTSBH
T ss_pred ccccc-chhhhhcccc-------cccchhhhh------------------hhccccc----------cccc---ccCcce
Confidence 75544 5544444322 222222210 1111100 0000 000000
Q ss_pred CccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCC----CCceeeeeee-
Q 003751 430 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY----QPYVWEYSRL- 504 (798)
Q Consensus 430 ~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~----~P~~w~f~~L- 504 (798)
....||..+ +.|=...+.++++.|.|-..+-..-.-+.+.++.. .|.....+.|
T Consensus 133 ------------------~~~~Yp~lQ---aaD~~~l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~ 191 (292)
T PF00579_consen 133 ------------------GEFSYPLLQ---AADILLLKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLP 191 (292)
T ss_dssp ------------------HHHHHHHHH---HHHHHHTTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBB
T ss_pred ------------------eeEEccccc---ccceeeeccccccccchHHHHHHHHHHHHhhhcccccccCchheeecccc
Confidence 012355433 23333556679999998877766666677778876 7765555554
Q ss_pred cCCCe-eeecccccccc
Q 003751 505 NVSNT-VMSKRKLNFLV 520 (798)
Q Consensus 505 n~~g~-KLSKR~~~~lv 520 (798)
..+|+ ||||+..+..|
T Consensus 192 ~l~G~~KMSKS~~ns~I 208 (292)
T PF00579_consen 192 GLDGQKKMSKSDPNSAI 208 (292)
T ss_dssp STTSSSBTTTTTTGGS-
T ss_pred ccCCccccCccCCccEE
Confidence 67888 99999998433
No 113
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=96.54 E-value=0.0053 Score=77.04 Aligned_cols=94 Identities=21% Similarity=0.154 Sum_probs=64.7
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC-------------------------ccc-------
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN-------------------------PEA------- 321 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDTD-------------------------p~R------- 321 (798)
++.==||.+||.||||||++..+-+.++|. ..|.-++.+=..| +..
T Consensus 57 ~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~ 136 (961)
T PRK13804 57 VLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECRE 136 (961)
T ss_pred EEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHH
Confidence 444458999999999999999999999984 4565555444333 110
Q ss_pred chHHHHHHHHHHHHHcCCC--CCcccCCch--hHHHHHHHHHHHHHcCCccc
Q 003751 322 EKKEYIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 322 e~~e~~~~I~edL~wLGl~--pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~ 369 (798)
-..++++.+.++++.||+. |+..+.+.+ |.........+|.++|+.|.
T Consensus 137 ~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr 188 (961)
T PRK13804 137 YALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYR 188 (961)
T ss_pred HHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 1235677888999999996 777655544 33333344568999999775
No 114
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.27 E-value=0.0053 Score=72.18 Aligned_cols=92 Identities=24% Similarity=0.361 Sum_probs=65.9
Q ss_pred CeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHc--CCEEEEEee----------------cCCcccchHHHHHHHHHHHH
Q 003751 274 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKER--GGYCYLRYD----------------DTNPEAEKKEYIDHIEEIVQ 335 (798)
Q Consensus 274 g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~--~G~~iLRid----------------DTDp~Re~~e~~~~I~edL~ 335 (798)
.+++.-.=|-|+|-|||||.|-..++..+||.| .|.=++.-- .++|.--...-++.+.+.|.
T Consensus 58 ~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql~ 137 (876)
T KOG0435|consen 58 KKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQLK 137 (876)
T ss_pred CceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHHH
Confidence 357777778999999999999999999999953 454443221 23344446677888899999
Q ss_pred HcCCC--CCc-c-cCCchhHHHHHHH----HHHHHHcCCccc
Q 003751 336 WMGWE--PFK-I-TYTSDYFQELYEL----AVELIRRGHAYV 369 (798)
Q Consensus 336 wLGl~--pd~-i-~yqSd~~~~~ye~----a~~LI~~G~AY~ 369 (798)
.||+. ||. + +-. +.||.+ ..+|-+.|+||.
T Consensus 138 ~lg~~FDWdrEiSTC~----PdYYKWTQwiFlkLfe~GLAYq 175 (876)
T KOG0435|consen 138 SLGISFDWDREISTCE----PDYYKWTQWIFLKLFEKGLAYQ 175 (876)
T ss_pred HcCcccccccccccCC----cchhHHHHHHHHHHHHhhhhhc
Confidence 99986 664 3 222 345544 358999999996
No 115
>TIGR00133 gatB glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit. The heterotrimer GatABC is responsible for transferring the NH2 group that converts Glu to Gln, or Asp to Asn after the Glu or Asp has been ligated to the tRNA for Gln or Asn, respectively. In Lactobacillus, GatABC is responsible only for tRNA(Gln). In the Archaea, GatABC is responsible only for tRNA(Asn), while GatDE is responsible for tRNA(Gln). In lineages that include Thermus, Chlamydia, or Acidithiobacillus, the GatABC complex catalyzes both.
Probab=96.26 E-value=0.092 Score=61.14 Aligned_cols=159 Identities=14% Similarity=0.152 Sum_probs=110.6
Q ss_pred HHHHH-HhcCCChhhHHHhhhCHHHHHHHHHHHHHcccCCCCchhhhHHHH-HHHhhCCC---------CCCCchHHHHH
Q 003751 12 ILELF-LKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLY-TVATKYPT---------NALVHRPTLLL 80 (798)
Q Consensus 12 ~~~~f-~~iGl~e~ka~e~~kn~~~~~~l~~~I~~a~~~~~~~~~~g~lly-~la~~~~~---------~~~~~~~~~~~ 80 (798)
..+.| ...||++.-|.-++.++.++.-+.+++.... -++...+.|. .+...++. -...+...|+.
T Consensus 304 ~~~R~~~~ygls~~~a~~L~~~~~~~~~fe~~~~~~~----~~k~~anwl~~el~~~l~~~~~~i~~~~l~p~~l~~Li~ 379 (478)
T TIGR00133 304 KRIRLKKEYGLSEQDAKVLTSDLTLADYFEEVVKLIG----DPKLAANWICIELLGVLNKLQISLAECGLKPSDLAELIK 379 (478)
T ss_pred HHHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHCCCCHhhcCCCHHHHHHHHH
Confidence 34444 5789999999999999999998888765421 2344544433 22222211 12357889999
Q ss_pred HHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhh--ccccchhhhHHH
Q 003751 81 YIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILEL--RYRTNVGDLFAH 158 (798)
Q Consensus 81 yI~~~~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~~--RY~~n~g~l~~~ 158 (798)
.|.+|+|.. .+....|.-+-.. .-+.+++-++-|.+.+-.+++|++.|+++|++|.+++.+- +-.--+|-|+|+
T Consensus 380 lv~~g~Is~-~~ak~vl~~~~~~---~~~~~~ii~~~gl~~isd~~~l~~iv~evl~~np~~v~~~k~Gk~k~~~~lvGq 455 (478)
T TIGR00133 380 LIKEGKISG-KSAKQLIEEMLEN---GGDPSKLIEELGLEQISDEKELIKIIEEVIKENPKEVEKYLSGKERALKFLVGQ 455 (478)
T ss_pred HHHcCCCcH-HHHHHHHHHHHhc---CCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHHHHHHHHHH
Confidence 999999986 5556666655443 3578999999998864444589999999999998877761 222236777777
Q ss_pred HHhh-CCCCChhhHHHHHHHH
Q 003751 159 VRKR-LPWADPKIVKQLIDAR 178 (798)
Q Consensus 159 ~r~~-lkwad~~~~k~~~d~~ 178 (798)
+=+. =-=|||+.|.+.|...
T Consensus 456 vMk~t~GkA~p~~v~~~l~~~ 476 (478)
T TIGR00133 456 VMKRTRGRANPQLVNEILKEM 476 (478)
T ss_pred HHHHhCCCCCHHHHHHHHHHH
Confidence 7443 4469999999888654
No 116
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=95.59 E-value=0.065 Score=49.34 Aligned_cols=39 Identities=54% Similarity=0.909 Sum_probs=28.6
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCccc
Q 003751 278 TRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA 321 (798)
Q Consensus 278 tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~R 321 (798)
+.|++++ |++|+||...+-. |......+++.|.|.++..
T Consensus 2 ~~~~G~F-dp~H~GH~~l~~~----a~~~~d~~i~~i~~~~~~~ 40 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKLICR----AKGIADQCVVRIDDNPPVK 40 (105)
T ss_pred EEeCCCC-CCCCHHHHHHHHH----HHHhCCcEEEEEcCCCccc
Confidence 5789999 9999999997433 3333367889998877544
No 117
>PLN02959 aminoacyl-tRNA ligase
Probab=95.37 E-value=0.035 Score=70.69 Aligned_cols=31 Identities=35% Similarity=0.415 Sum_probs=26.4
Q ss_pred eeEEEeC-CCCCCcCchhHHHHHHHHHHHHHH
Q 003751 275 NVLTRFP-PEPNGYLHIGHAKAMFVDFGLAKE 305 (798)
Q Consensus 275 ~v~tRFa-PsPtG~LHIGharaal~n~l~Ar~ 305 (798)
++..=|| |.+||.|||||+++..+-..+||.
T Consensus 46 kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Ry 77 (1084)
T PLN02959 46 KFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAY 77 (1084)
T ss_pred cEEEeCCCCCCCCCcchhhHHHHHHHHHHHHH
Confidence 3556665 999999999999999999988883
No 118
>COG0064 GatB Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Translation, ribosomal structure and biogenesis]
Probab=94.65 E-value=0.7 Score=53.69 Aligned_cols=156 Identities=18% Similarity=0.241 Sum_probs=102.7
Q ss_pred HHhcCCChhhHHHhhhCHHHHHHHHHHHHHcccCCCCchhhhHHH-HHHHhhCC---------CCCCCchHHHHHHHhcC
Q 003751 16 FLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLL-YTVATKYP---------TNALVHRPTLLLYIVSS 85 (798)
Q Consensus 16 f~~iGl~e~ka~e~~kn~~~~~~l~~~I~~a~~~~~~~~~~g~ll-y~la~~~~---------~~~~~~~~~~~~yI~~~ 85 (798)
-...||++.-|.-++.++.++.-+..+.....- .+...+.+ -.|+..+. +-..++...|++.|.+|
T Consensus 311 ~~~~gls~~dA~~L~~d~~la~~fe~~~~~~~~----~k~~anW~~~el~~~Ln~~~~~i~~~~~~p~~la~Li~li~~g 386 (483)
T COG0064 311 IKEYGLSEYDARVLTSDKELADYFEEAVKAGAD----AKLAANWLTNELLGLLNKAGITLEESPLTPEQLAELIKLIDEG 386 (483)
T ss_pred HHHcCCCHHHHHHHHcCHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHhcCCChhhcCCCHHHHHHHHHHHHcC
Confidence 348999999999999999998888777543331 23332221 11221111 12235789999999999
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhcc--ccchhhhHHHH-Hhh
Q 003751 86 KIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRY--RTNVGDLFAHV-RKR 162 (798)
Q Consensus 86 ~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~~RY--~~n~g~l~~~~-r~~ 162 (798)
+|.+..--+....-+.+. .-+..+.-++-|...+-.+++|+++|+++|++|...+++-|= .--+|=++|+| |+.
T Consensus 387 ~IS~k~AK~~v~~~~~~~---~~~p~~iie~~gL~qisD~~~l~~~V~evia~Np~~ve~yk~GK~~~~~f~vGQVMk~T 463 (483)
T COG0064 387 TISGKIAKELVFEILANG---GKDPEEIIEEKGLVQISDEGELEKIVDEVLAENPKAVEDYKSGKEKALGFLVGQVMKAT 463 (483)
T ss_pred CccHHHHHHHHHHHHHcc---CCCHHHHHHhcCccccCCHHHHHHHHHHHHHHCHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 998755444455545443 258899999999999777779999999999999987765443 11133444443 222
Q ss_pred CCCCChhhHHHHHHHH
Q 003751 163 LPWADPKIVKQLIDAR 178 (798)
Q Consensus 163 lkwad~~~~k~~~d~~ 178 (798)
=-=|||..+...|-..
T Consensus 464 ~GkAnP~~v~~ll~~~ 479 (483)
T COG0064 464 KGKANPQQVNELLKEK 479 (483)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 3357888777666544
No 119
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.47 E-value=0.087 Score=64.03 Aligned_cols=92 Identities=30% Similarity=0.370 Sum_probs=68.1
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCcc------------------------cc---------hH
Q 003751 280 FPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE------------------------AE---------KK 324 (798)
Q Consensus 280 FaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDTDp~------------------------Re---------~~ 324 (798)
=||+.||.||||||-++.+-..+||. ..|.-+|=+-.||.. |+ ..
T Consensus 82 PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~ 161 (995)
T KOG0432|consen 82 PPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKE 161 (995)
T ss_pred CCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHH
Confidence 37899999999999999999999984 467777766677632 11 35
Q ss_pred HHHHHHHHHHHHcCCC--CCcccCCch--hHHHHHHHHHHHHHcCCccccC
Q 003751 325 EYIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYVDH 371 (798)
Q Consensus 325 e~~~~I~edL~wLGl~--pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~C~ 371 (798)
++-..|.+.|+.||-. |+...|.-| .-...-+...+|-++|..|+..
T Consensus 162 e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~ 212 (995)
T KOG0432|consen 162 EYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRAN 212 (995)
T ss_pred HhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecC
Confidence 7778899999999975 766555443 2223345667999999999744
No 120
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=94.45 E-value=0.096 Score=65.91 Aligned_cols=65 Identities=17% Similarity=0.113 Sum_probs=50.0
Q ss_pred CCcee-eeeeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHH
Q 003751 495 QPYVW-EYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 573 (798)
Q Consensus 495 ~P~~w-~f~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 573 (798)
.|..| ++|++..+|+|||||+|| ..++..+.++ |.+.++|-||+..|-...+..++.+.+.+.
T Consensus 604 ~Pk~i~~~G~vl~~G~KMSKSlGN---------------vI~p~d~i~~-yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~ 667 (938)
T TIGR00395 604 WPRGIVVNGYVMLEGKKMSKSKGN---------------VLTLEQAVEK-FGADVARLYIADAAETVQDADWKESEVEGT 667 (938)
T ss_pred cCcEEEEeceEEeCCccccCcCCC---------------CCCHHHHHHH-cChHHHHHHHHhcCCCCCCCCcCHHHHHHH
Confidence 35444 468888899999999998 3466677665 999999999998876556667887777766
Q ss_pred HH
Q 003751 574 IR 575 (798)
Q Consensus 574 ir 575 (798)
.+
T Consensus 668 ~~ 669 (938)
T TIGR00395 668 IL 669 (938)
T ss_pred HH
Confidence 54
No 121
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=94.34 E-value=0.02 Score=66.41 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=61.1
Q ss_pred hhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhhhccCCcceeEecceeEEEEe
Q 003751 533 LMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN 598 (798)
Q Consensus 533 ~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~dp~kl~i~N 598 (798)
..++..++..|+.|+|+.+|++.+||+.+...+....+++.+.+|....+.+..+.||..||.+.|
T Consensus 257 ~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~fd~~~~~~~~~~fd~~kL~~~n 322 (472)
T COG0008 257 AVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPAAFDRKKLDWLN 322 (472)
T ss_pred ccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhhhhhhhhcccccccHHHhHhhh
Confidence 467888999999999999999999999876778889999999999999999999999999999887
No 122
>PLN02886 aminoacyl-tRNA ligase
Probab=94.29 E-value=0.087 Score=59.80 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=59.8
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC------cccchHHHHHHHHHHHHHcCCCCCc--ccC
Q 003751 275 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN------PEAEKKEYIDHIEEIVQWMGWEPFK--ITY 346 (798)
Q Consensus 275 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTD------p~Re~~e~~~~I~edL~wLGl~pd~--i~y 346 (798)
.|.+=| .|||.+||||...++-+|..-.. +..+++=|-|.- ...+..+....+..++-.+|++|++ ++.
T Consensus 48 ~v~sGi--qPSG~lHLGnylGai~~~v~lQ~-~~~~~~~IADlHAlt~~~~~~~lr~~~~~~~a~~lA~GlDP~ks~if~ 124 (389)
T PLN02886 48 RVVSGV--QPTGSIHLGNYLGAIKNWVALQE-TYDTFFCVVDLHAITLPHDPRELGKATRSTAAIYLACGIDPSKASVFV 124 (389)
T ss_pred eEEEEE--CCCCccHHHHHHHHHHHHHHHhc-cCCEEEEEecHHHhhCCCCHHHHHHHHHHHHHHHHHcCcCccceEEEE
Confidence 344544 56799999999988888866554 555555566642 1223444555667788889999984 789
Q ss_pred CchhHHHHHHHHHHHHHcCCccccCCCHHHHH
Q 003751 347 TSDYFQELYELAVELIRRGHAYVDHQTPEEIK 378 (798)
Q Consensus 347 qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~ 378 (798)
||+. ..+.+++-. +.|.++--+|.
T Consensus 125 QS~v-~e~~eL~wi-------l~~~t~~g~L~ 148 (389)
T PLN02886 125 QSHV-PAHAELMWL-------LSCSTPIGWLN 148 (389)
T ss_pred eCCC-chhHHHHHH-------HHhhCcHHHHH
Confidence 9984 334443322 45666655554
No 123
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=94.01 E-value=0.097 Score=59.52 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=49.5
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC----Cc---ccchHHHHHHHHHHHHHcCCCCCc--ccCCchh
Q 003751 283 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NP---EAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDY 350 (798)
Q Consensus 283 sPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDT----Dp---~Re~~e~~~~I~edL~wLGl~pd~--i~yqSd~ 350 (798)
.|||.+||||.-.++-+|.- .+.++.+++=|-|. ++ ..+.......+..++-.+|++|++ ++.||+.
T Consensus 10 qPSG~~HLGnylG~ik~wv~-lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~QS~v 85 (398)
T PRK12283 10 RPTGRLHLGHYHGVLKNWVK-LQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQSKV 85 (398)
T ss_pred CCCCcchHHHHHHHHHHHHH-HhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCCc
Confidence 57899999999999888874 34566766667664 22 234445556678888899999984 7899986
No 124
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.81 E-value=0.19 Score=57.78 Aligned_cols=74 Identities=20% Similarity=0.174 Sum_probs=51.2
Q ss_pred CCCCcCchhHHHHHHHHHHHHHH-cCCEEEEEeecC-------CcccchHHHHHHHHHHHHHcCCCCCc--ccCCchhHH
Q 003751 283 EPNGYLHIGHAKAMFVDFGLAKE-RGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 352 (798)
Q Consensus 283 sPtG~LHIGharaal~n~l~Ar~-~~G~~iLRidDT-------Dp~Re~~e~~~~I~edL~wLGl~pd~--i~yqSd~~~ 352 (798)
.|||.+||||...++-||+-... .+..+++=|-|. ||.+ .......+..++-.+|++|++ +++||+--
T Consensus 10 qPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~-lr~~~~e~aa~~LA~GlDPek~~if~QSdvp- 87 (431)
T PRK12284 10 TTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPAR-IQRSTLEIAATWLAAGLDPERVTFYRQSDIP- 87 (431)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHH-HHHHHHHHHHHHHHhCCCccceEEEECCcch-
Confidence 68999999999999989988754 354565556554 3332 333444466778888999985 78999853
Q ss_pred HHHHHH
Q 003751 353 ELYELA 358 (798)
Q Consensus 353 ~~ye~a 358 (798)
.+.+++
T Consensus 88 eh~EL~ 93 (431)
T PRK12284 88 EIPELT 93 (431)
T ss_pred hHHHHH
Confidence 344443
No 125
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=93.05 E-value=0.4 Score=47.11 Aligned_cols=102 Identities=25% Similarity=0.298 Sum_probs=71.9
Q ss_pred CchHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHh--hcccc
Q 003751 73 VHRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILE--LRYRT 150 (798)
Q Consensus 73 ~~~~~~~~yI~~~~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~--~RY~~ 150 (798)
.+...|+.++.+|+|.. .+....+..+-++ .-+.++.-+..|.+..-++++|++.|+++|++|.+++.+ .+=.-
T Consensus 43 ~~l~~li~l~~~~~Is~-~~ak~ll~~~~~~---~~~~~~ii~~~~l~~i~d~~el~~~v~~vi~~n~~~v~~~~~Gk~k 118 (148)
T PF02637_consen 43 EHLAELINLLEDGKISK-KSAKELLRELLEN---GKSPEEIIEENGLWQISDEEELEALVEEVIAENPKEVEDYRNGKKK 118 (148)
T ss_dssp HHHHHHHHHHHTTSSGH-HHHHHHHHHHHHH---TS-HHHHHHHTT---B--CCHHHHHHHHHHHC-HHHHHHHCTT-TT
T ss_pred HHHHHHHHHHHcCCCCH-HHHHHHHHHHHHc---CCCHHHHHHHcCCCcCCCHHHHHHHHHHHHHHCHHHHHHHHcChHH
Confidence 57888999999999975 6778888877654 357789999999988777799999999999999876642 22222
Q ss_pred chhhhHHHHHhhCC-CCChhhHHHHHHHH
Q 003751 151 NVGDLFAHVRKRLP-WADPKIVKQLIDAR 178 (798)
Q Consensus 151 n~g~l~~~~r~~lk-wad~~~~k~~~d~~ 178 (798)
-+|-|||++-+..+ =|||+.|++.+.+.
T Consensus 119 ~~~~LvGqvMk~t~G~adp~~v~~~l~~~ 147 (148)
T PF02637_consen 119 AIGFLVGQVMKETKGRADPKEVKELLKEK 147 (148)
T ss_dssp CCHHHHHHHHHCTTS-C-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 36788888865544 79999999988764
No 126
>smart00845 GatB_Yqey GatB domain. This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Probab=92.77 E-value=0.9 Score=44.73 Aligned_cols=101 Identities=27% Similarity=0.358 Sum_probs=75.9
Q ss_pred CchHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCH-HHHHHHHHHHHHhhHhHHHhhccc--
Q 003751 73 VHRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSS-EDIELTVNEVFEENKNTILELRYR-- 149 (798)
Q Consensus 73 ~~~~~~~~yI~~~~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~-e~i~~~v~~~~~~~k~~~~~~RY~-- 149 (798)
.+...|+..|.+|+|+. .+....++.+-+.. -+..++-++.|.+- +|. +++++.|+++|++|.+.+.+-|=.
T Consensus 42 ~~l~~li~lv~~g~It~-~~ak~vl~~~~~~~---~~~~~ii~~~~l~~-isd~~el~~~v~~vi~~~~~~v~~~~~g~~ 116 (147)
T smart00845 42 EHLAELLKLIEDGTISG-KIAKEVLEELLESG---KSPEEIVEEKGLKQ-ISDEGELEAIVDEVIAENPKAVEDYRAGKK 116 (147)
T ss_pred HHHHHHHHHHHcCCCcH-HHHHHHHHHHHHcC---CCHHHHHHHcCCcc-CCCHHHHHHHHHHHHHHCHHHHHHHHCCHH
Confidence 57888999999999986 56666777765542 46889999999875 776 599999999999998876653311
Q ss_pred cchhhhHHHHHhh-CCCCChhhHHHHHHHH
Q 003751 150 TNVGDLFAHVRKR-LPWADPKIVKQLIDAR 178 (798)
Q Consensus 150 ~n~g~l~~~~r~~-lkwad~~~~k~~~d~~ 178 (798)
-.+|.+||++-+. =-=|||+.+.+.|...
T Consensus 117 k~~~~l~G~vMk~~~G~ad~~~v~~~l~~~ 146 (147)
T smart00845 117 KALGFLVGQVMKATRGKADPKLVNELLKEK 146 (147)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 2377888887554 3348999998887643
No 127
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=92.16 E-value=0.4 Score=60.20 Aligned_cols=61 Identities=16% Similarity=0.063 Sum_probs=45.1
Q ss_pred eeeeeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHH
Q 003751 499 WEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 575 (798)
Q Consensus 499 w~f~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir 575 (798)
..+|++..+|.|||||+||. .+...+.++ |.+.++|-||+..|-...+..++.+.+....+
T Consensus 566 ~~hG~vl~~G~KMSKS~GNv---------------Vdp~eii~~-yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~~ 626 (897)
T PRK12300 566 VVNGFVLLEGKKMSKSKGNV---------------IPLRKAIEE-YGADVVRLYLTSSAELLQDADWREKEVESVRR 626 (897)
T ss_pred EEcceEEECCccccCcCCCC---------------CCHHHHHHH-cChHHHHHHHHhCCCCCCCCccCHHHHHHHHH
Confidence 34678777999999999983 345555554 88999999999876666666777776665543
No 128
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=91.26 E-value=0.96 Score=55.00 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=52.3
Q ss_pred cHHHHHHhhhhcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc----cchHHHHHHHH
Q 003751 261 TKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE----AEKKEYIDHIE 331 (798)
Q Consensus 261 ~~~~~~~hl~~~~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDT-----Dp~----Re~~e~~~~I~ 331 (798)
|.+-|++-++. +..++.=..=.|||.|||||..-..++.....+.|..+++=|-|. |+. +........+.
T Consensus 19 ~~eeL~~ll~~-~~~~rv~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~ 97 (682)
T PTZ00348 19 QESELRNLIEK-KPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLI 97 (682)
T ss_pred CHHHHHHHHhc-CCCCEEEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHH
Confidence 35555554543 223332234467899999994221344444446677776666664 221 11222234677
Q ss_pred HHHHHcCCCCCc--ccCCchhH
Q 003751 332 EIVQWMGWEPFK--ITYTSDYF 351 (798)
Q Consensus 332 edL~wLGl~pd~--i~yqSd~~ 351 (798)
.++..+|++|++ +.+||+.+
T Consensus 98 ~~~lA~GlDpeK~~~~~qSd~i 119 (682)
T PTZ00348 98 EVWKAAGMDMDKVLFLWSSEEI 119 (682)
T ss_pred HHHHHcCCCccceEEEECcHhh
Confidence 788999999984 78899843
No 129
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=91.04 E-value=0.74 Score=45.45 Aligned_cols=85 Identities=20% Similarity=0.248 Sum_probs=56.0
Q ss_pred chHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchh
Q 003751 74 HRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVG 153 (798)
Q Consensus 74 ~~~~~~~yI~~~~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~~RY~~n~g 153 (798)
++.-+..|-..|+.+--.+..+=+..|.+.- .-.+|+|||++.|.++|++..+. . .-++|
T Consensus 57 r~ea~e~y~~agR~dlae~e~~Ei~iL~~yL---------------P~~lseeEi~~~v~~~i~e~ga~----~-~k~mG 116 (143)
T PF09424_consen 57 RKEAAEQYEKAGRPDLAEKEQAEIEILEEYL---------------PKQLSEEEIEAIVEEAIAELGAS----S-MKDMG 116 (143)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHGGGS--------------------HHHHHHHHHHHHHHTT------B-GGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC---------------cCCCCHHHHHHHHHHHHHHhCCC----C-hHHHH
Confidence 3555666666676555555666666676652 24799999999999999996543 1 22699
Q ss_pred hhHHHHHhhCC-CCChhhHHHHHHHH
Q 003751 154 DLFAHVRKRLP-WADPKIVKQLIDAR 178 (798)
Q Consensus 154 ~l~~~~r~~lk-wad~~~~k~~~d~~ 178 (798)
.+|+.++..++ =+||+.|...|-..
T Consensus 117 ~vMk~l~~~~~G~~Dgk~vs~~Vk~~ 142 (143)
T PF09424_consen 117 KVMKALMAKLKGRADGKKVSQLVKEA 142 (143)
T ss_dssp HHHHHHHHHHTTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccHHHHHHHHHhh
Confidence 99999998754 58999998887654
No 130
>PLN02943 aminoacyl-tRNA ligase
Probab=90.38 E-value=0.49 Score=59.85 Aligned_cols=65 Identities=15% Similarity=0.082 Sum_probs=47.8
Q ss_pred ceeeeeee-cCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHH
Q 003751 497 YVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 575 (798)
Q Consensus 497 ~~w~f~~L-n~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir 575 (798)
.+|-++.+ +.+|+||||++|+. .+...+.++ |.|.++|-||+..+. ..+..++++.|++ .+
T Consensus 569 ~v~~hg~v~~~~G~KMSKS~GN~---------------i~p~~~i~~-ygaDalR~~l~~~~~-~~d~~fs~~~l~~-~~ 630 (958)
T PLN02943 569 YVYLHGLIRDSQGRKMSKTLGNV---------------IDPLDTIKE-FGTDALRFTLALGTA-GQDLNLSTERLTS-NK 630 (958)
T ss_pred eEEEeccEECCCCCcccCcCCCC---------------CCHHHHHHh-cCChHHHHHHHhCCC-CCCccccHHHHHH-HH
Confidence 46777765 68999999999983 455666655 999999999987665 4566788887765 34
Q ss_pred Hhhh
Q 003751 576 EELN 579 (798)
Q Consensus 576 ~~~~ 579 (798)
.+++
T Consensus 631 ~~~~ 634 (958)
T PLN02943 631 AFTN 634 (958)
T ss_pred HHHH
Confidence 4443
No 131
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=90.35 E-value=0.7 Score=57.84 Aligned_cols=88 Identities=14% Similarity=0.040 Sum_probs=57.3
Q ss_pred cCcccccchhhHHHHHHH--hCCCCC--ceeeeeeec-CCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChH
Q 003751 473 CTLEFETRRASYFWLLHA--LGLYQP--YVWEYSRLN-VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTST 547 (798)
Q Consensus 473 RG~E~~~~t~~q~~L~~a--Lg~~~P--~~w~f~~Ln-~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~Pe 547 (798)
-|.|.+ +.-.+.+++.. +.-..| .++-+|++. .+|.|||||+|+. .+...+.++ |.+.
T Consensus 484 ~G~Dii-~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~---------------i~p~~~i~~-ygaD 546 (861)
T TIGR00422 484 TGYDII-FFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNV---------------IDPLDVIEK-YGAD 546 (861)
T ss_pred cchhhh-hHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCCCCCcCCCCC---------------CCHHHHHHH-hChH
Confidence 344432 23334444443 322445 455667765 5999999999983 455566655 8899
Q ss_pred HHHHHHHHcCCCCCCccccHhhHHHHHHHhh
Q 003751 548 SINAFVQGIGISRSDSLIRLDRLEYHIREEL 578 (798)
Q Consensus 548 AI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~ 578 (798)
|+|-|++..+....+..++++.+... ++++
T Consensus 547 alR~~l~~~~~~~~d~~f~~~~~~~~-~~~~ 576 (861)
T TIGR00422 547 ALRFTLASLVTPGDDINFDWKRVESA-RNFL 576 (861)
T ss_pred HHHHHHHhCCCCCCCceecHHHHHHH-HHHH
Confidence 99999998887666777888877764 3344
No 132
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=89.92 E-value=0.44 Score=59.87 Aligned_cols=80 Identities=21% Similarity=0.239 Sum_probs=53.9
Q ss_pred CchhHHHHHHHHHHHHHH--cCCEEEEEe---ecCC-cc------------------------------------cchHH
Q 003751 288 LHIGHAKAMFVDFGLAKE--RGGYCYLRY---DDTN-PE------------------------------------AEKKE 325 (798)
Q Consensus 288 LHIGharaal~n~l~Ar~--~~G~~iLRi---dDTD-p~------------------------------------Re~~e 325 (798)
|||||+++..+-..+||. ..|.-+|+. |.+- |- .-...
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 799999999999999984 467666653 3221 10 01123
Q ss_pred HHHHHHHHHHHcCCC--CCcccCCchhHHHHHHH----HHHHHHcCCccc
Q 003751 326 YIDHIEEIVQWMGWE--PFKITYTSDYFQELYEL----AVELIRRGHAYV 369 (798)
Q Consensus 326 ~~~~I~edL~wLGl~--pd~i~yqSd~~~~~ye~----a~~LI~~G~AY~ 369 (798)
|.+.+.++++.||+. |+..+.+.+ +.|++. ..+|.++|+.|.
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~y~T~d--p~y~~~v~w~F~~L~ekGliyr 128 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRREFTTTD--PEYSKFIEWQFRKLKEKGLIVK 128 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCCeECCC--hhHHHHHHHHHHHHHHCCCEec
Confidence 447789999999985 666555554 334433 458999999985
No 133
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=89.75 E-value=0.54 Score=59.62 Aligned_cols=66 Identities=15% Similarity=0.103 Sum_probs=47.5
Q ss_pred eeeeee-ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHH
Q 003751 498 VWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 576 (798)
Q Consensus 498 ~w~f~~-Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~ 576 (798)
.+.+|+ ++.+|+|||||+|+. .+...+.++ |.+.|+|-|++..+....+..++++.+-+.++.
T Consensus 579 v~~hG~Vld~~G~KMSKSlGNv---------------IdP~dli~~-yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~ 642 (975)
T PRK06039 579 VLVHGHVLDEDGQKMSKSLGNY---------------VDPFEVFDK-YGADALRWYLLSSSAPWEDLRFSEDGVREVVRK 642 (975)
T ss_pred EEEeeeEECCCCCCcCCCCCCc---------------CCHHHHHHH-hChHHHHHHHHhCCCCCCCceechhHHHHHHHH
Confidence 444566 456999999999983 355566655 889999999999887556667888874455555
Q ss_pred hhh
Q 003751 577 ELN 579 (798)
Q Consensus 577 ~~~ 579 (798)
+++
T Consensus 643 ~l~ 645 (975)
T PRK06039 643 FLL 645 (975)
T ss_pred HHH
Confidence 543
No 134
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=89.73 E-value=0.74 Score=57.15 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=46.1
Q ss_pred ceeeeeee-cCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHH
Q 003751 497 YVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 575 (798)
Q Consensus 497 ~~w~f~~L-n~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir 575 (798)
.++.+|++ +.+|+|||||+|+ ..++..+.+. |.+.++|-|++ .+-...+..++.+.+.. ++
T Consensus 519 ~v~~hg~v~~~~G~KMSKS~GN---------------~i~p~~~i~~-yg~D~lR~~l~-~~~~~~d~~fs~~~~~~-~~ 580 (800)
T PRK13208 519 NIMISGMVLDPDGKKMSKSKGN---------------VVTPEELLEK-YGADAVRYWAA-SARLGSDTPFDEKQVKI-GR 580 (800)
T ss_pred eEEEeeEEECCCCCCCCCCCCC---------------CCCHHHHHHH-cCccHHHHHHh-cCCCCCCceecHHHHHH-HH
Confidence 45667775 5799999999998 3466777766 88999999998 55444566677777754 33
Q ss_pred Hhh
Q 003751 576 EEL 578 (798)
Q Consensus 576 ~~~ 578 (798)
.++
T Consensus 581 ~~l 583 (800)
T PRK13208 581 RLL 583 (800)
T ss_pred HHH
Confidence 443
No 135
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.94 E-value=5.4 Score=45.82 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=53.3
Q ss_pred cCcHHHHHHhhhhcCCeeEEEeCCCCCC-cCchhHHHHHHH-HHHHHHHcCCEEE-----EEeecCCcc-----c---ch
Q 003751 259 CNTKEVLDKHLEVTGGNVLTRFPPEPNG-YLHIGHAKAMFV-DFGLAKERGGYCY-----LRYDDTNPE-----A---EK 323 (798)
Q Consensus 259 ~~~~~~~~~hl~~~~g~v~tRFaPsPtG-~LHIGharaal~-n~l~Ar~~~G~~i-----LRidDTDp~-----R---e~ 323 (798)
..+.+.+.+.++.. +++.=..=.||| .|||||+..+.. -++..-.|....+ =.|. ||. | ..
T Consensus 18 i~~ee~l~~ll~~~--~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh~~ivLigd~ta~Ig--DpsGk~e~r~~l~~ 93 (401)
T COG0162 18 ITDEEELRKLLEEG--PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHKPIVLIGDATAMIG--DPSGKSEERKLLTR 93 (401)
T ss_pred cCcHHHHHHHHhcC--CceEEEeeCCCCCccchhhHHHHHHHHHHHHCCCeEEEEecccceecC--CCCCCHHHHhhccH
Confidence 34588888877764 333333447889 899999998753 2222222332222 2333 342 1 12
Q ss_pred HHHHHHHHHHHHHcCCCCC---cccCCchhHHHHHHHHHHHHHcC
Q 003751 324 KEYIDHIEEIVQWMGWEPF---KITYTSDYFQELYELAVELIRRG 365 (798)
Q Consensus 324 ~e~~~~I~edL~wLGl~pd---~i~yqSd~~~~~ye~a~~LI~~G 365 (798)
+.+.+.+....+.+|...+ ++.+.|+.+..+ .+..-|.+-|
T Consensus 94 e~v~~n~~~i~~ql~~~ld~k~~~v~ns~w~~~~-~y~~~l~~~g 137 (401)
T COG0162 94 ETVLENAETIKKQLGKFLDNKAEFVNNSDWLKKL-NYLDFLRDVG 137 (401)
T ss_pred HHHHHHHHHHHHHhcccCCcceEEEechHHhCcC-CHHHHHHHHH
Confidence 2333444455566675555 466777764432 2334444433
No 136
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=88.05 E-value=0.88 Score=56.93 Aligned_cols=64 Identities=11% Similarity=-0.009 Sum_probs=45.7
Q ss_pred eeeeee-cCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHh
Q 003751 499 WEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREE 577 (798)
Q Consensus 499 w~f~~L-n~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~ 577 (798)
+-+|++ +.+|.|||||+|+. .+...+.++ |.+.++|-|++.. -...+..++++.+....+.+
T Consensus 599 ~~hG~vl~~~G~KMSKSkGNv---------------I~p~d~i~~-yGaDalR~~ll~~-~~~~D~~fs~~~l~~~~~~~ 661 (861)
T TIGR00392 599 ITHGFTLDEKGRKMSKSLGNV---------------VDPLKVINK-YGADILRLYVASS-DPWEDLRFSDEILKQVVEKY 661 (861)
T ss_pred EecceEECCCCCCcCCCCCCC---------------CCHHHHHHH-cCHHHHHHHHHhC-CCCCCceECHHHHHHHHHHH
Confidence 345664 56999999999983 355556654 8899999999877 34455678888887765544
Q ss_pred hh
Q 003751 578 LN 579 (798)
Q Consensus 578 ~~ 579 (798)
.+
T Consensus 662 ~n 663 (861)
T TIGR00392 662 RK 663 (861)
T ss_pred HH
Confidence 43
No 137
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=87.86 E-value=2.2 Score=48.56 Aligned_cols=86 Identities=22% Similarity=0.281 Sum_probs=50.1
Q ss_pred HHHHHHhhhhcCCeeEEEeCCCCCC-cCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc-----c------chH
Q 003751 262 KEVLDKHLEVTGGNVLTRFPPEPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----A------EKK 324 (798)
Q Consensus 262 ~~~~~~hl~~~~g~v~tRFaPsPtG-~LHIGharaal~n~l~Ar~~~G~~iLRidDT-----Dp~-----R------e~~ 324 (798)
.+.+.++++. .-.+.+=| .||| .|||||+.++. ....-...|...++=|-|- ||. | +..
T Consensus 20 ~~~l~~ll~~-~~~vy~G~--dPTg~~lHlGh~v~l~-~l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~ 95 (377)
T TIGR00234 20 EEELLKLLER-KIKLYVGF--DPTAPSLHLGHLVPLL-KLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQ 95 (377)
T ss_pred HHHHHHHhcC-CCEEEEee--CCCCCCccHHHHHHHH-HHHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHH
Confidence 6778888766 33333333 6789 89999999754 3333344454444445554 331 1 223
Q ss_pred HHHHHHHHHHHHcCCCCC--cccCCchhHH
Q 003751 325 EYIDHIEEIVQWMGWEPF--KITYTSDYFQ 352 (798)
Q Consensus 325 e~~~~I~edL~wLGl~pd--~i~yqSd~~~ 352 (798)
++.+.|.. .-..|++|+ .+.++|+.+.
T Consensus 96 ~n~~~i~~-~la~gld~~k~~iv~ns~w~~ 124 (377)
T TIGR00234 96 ENAENIKK-QIARFLDFEKAKFVNNSEWLL 124 (377)
T ss_pred HHHHHHHH-HHHHhCChhheEEEECchhcC
Confidence 34444443 345688886 4778888654
No 138
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=87.17 E-value=1.5 Score=55.12 Aligned_cols=67 Identities=19% Similarity=0.142 Sum_probs=48.1
Q ss_pred ceeeeeee-cCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHH
Q 003751 497 YVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 575 (798)
Q Consensus 497 ~~w~f~~L-n~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir 575 (798)
.++-||++ +.+|+|||||+|+. .+...+.++ |.+.|+|-|++..+....+..++++.+... +
T Consensus 506 ~v~~hG~v~d~~G~KMSKSlGNv---------------IdP~dvi~~-yGaDalR~~ll~~~~~~~Di~fs~~~l~~~-~ 568 (874)
T PRK05729 506 DVYIHGLVRDEQGRKMSKSKGNV---------------IDPLDLIDK-YGADALRFTLAALASPGRDIRFDEERVEGY-R 568 (874)
T ss_pred heEEeeeEECCCCCCcccCCCCC---------------CCHHHHHHH-hChHHHHHHHHhCCCCCCCceeCHHHHHHH-H
Confidence 56667775 47999999999983 344555554 889999999998766556677888887654 3
Q ss_pred Hhhhc
Q 003751 576 EELNK 580 (798)
Q Consensus 576 ~~~~~ 580 (798)
.+.+.
T Consensus 569 ~~~nk 573 (874)
T PRK05729 569 NFANK 573 (874)
T ss_pred HHHHH
Confidence 34443
No 139
>PHA01735 hypothetical protein
Probab=86.79 E-value=1.2 Score=38.43 Aligned_cols=55 Identities=22% Similarity=0.257 Sum_probs=45.5
Q ss_pred HHHHHHHhcCCCCCHHhHHHHHHHHHhcCC--CCCCHHHHHHHcCCCeeeCHHHHHHH
Q 003751 76 PTLLLYIVSSKIKTPAQLEAAFSFFASTGS--ENFEVDEFEEACGVGVEVSSEDIELT 131 (798)
Q Consensus 76 ~~~~~yI~~~~ikt~~Ql~aAlkyl~~~~~--~~id~~~Fe~~cGVGv~vt~e~i~~~ 131 (798)
..+.+.|.+|.-+ ++.|.||++||++|.- -+.|-.-+.+-.|+=-.+|+|++++.
T Consensus 19 ~El~~RiksgeAT-taDL~AA~d~Lk~NdItgv~~~gspl~~La~~~P~l~~e~vq~~ 75 (76)
T PHA01735 19 NELLSRIKSGEAT-TADLRAACDWLKSNDITGVAVDGSPLAKLAGLMPQLTFEDVQER 75 (76)
T ss_pred HHHHHHHhcCccc-HHHHHHHHHHHHHCCCceeeCCCCHHHHHHhcCccCCHHHHHhc
Confidence 4578899999965 5999999999999853 25777889999998889999998764
No 140
>PLN02959 aminoacyl-tRNA ligase
Probab=86.59 E-value=1.9 Score=55.29 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=43.3
Q ss_pred eeeeeeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHH
Q 003751 498 VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 575 (798)
Q Consensus 498 ~w~f~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir 575 (798)
+..+|++..+|+|||||+||. .++..+.++ |.+.++|-|++..+-...+..+....+.++++
T Consensus 706 v~v~G~V~~~G~KMSKSkGNv---------------I~p~diI~k-yGADalRl~la~~~~~~~D~nF~~k~~n~~~~ 767 (1084)
T PLN02959 706 FRCNGHLMLNSEKMSKSTGNF---------------LTLRQAIEE-FSADATRFALADAGDGVDDANFVFETANAAIL 767 (1084)
T ss_pred EEEccEEecCCcCccccCCCc---------------CCHHHHHHH-hCchHHHHHHhhcCCccCCCCccHHHHHHHHH
Confidence 334577789999999999983 455555554 88999999998775554555666654444433
No 141
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=83.61 E-value=2.4 Score=54.28 Aligned_cols=65 Identities=17% Similarity=0.131 Sum_probs=44.6
Q ss_pred eeeeeeec-CCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHH
Q 003751 498 VWEYSRLN-VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 576 (798)
Q Consensus 498 ~w~f~~Ln-~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~ 576 (798)
.+-+|++. .+|.|||||+|+. .....+.++ |.++++|-|++..+....+..++++.|+.. +.
T Consensus 525 V~~hG~v~d~~G~KMSKSkGNv---------------IdP~dvIe~-yGaDalR~~L~~~~~~g~D~~fs~~~l~~~-~~ 587 (1052)
T PRK14900 525 VYLHPMVRDEKGQKMSKTKGNV---------------IDPLVITEQ-YGADALRFTLAALTAQGRDIKLAKERIEGY-RA 587 (1052)
T ss_pred eEecccEECCCCCCccCCCCCC---------------CCHHHHHHH-hCcHHHHHHHHhcCCCCCCCcccHHHHHHH-HH
Confidence 44556664 5999999999983 233444443 889999999998765556667887777543 34
Q ss_pred hhh
Q 003751 577 ELN 579 (798)
Q Consensus 577 ~~~ 579 (798)
|.+
T Consensus 588 f~n 590 (1052)
T PRK14900 588 FAN 590 (1052)
T ss_pred HHH
Confidence 443
No 142
>PLN02843 isoleucyl-tRNA synthetase
Probab=83.09 E-value=2 Score=54.65 Aligned_cols=60 Identities=18% Similarity=0.106 Sum_probs=42.6
Q ss_pred Cceeeeee-ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHC--------CCChHHHHHHHHHcCCCCCCcccc
Q 003751 496 PYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR--------GVTSTSINAFVQGIGISRSDSLIR 566 (798)
Q Consensus 496 P~~w~f~~-Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrr--------G~~PeAI~~fl~~lG~s~~~~~~~ 566 (798)
-.+|.||+ ++.+|+||||+.||. .+...+... -|.+.++|-|+++..++. +..++
T Consensus 596 k~v~~HG~vld~~G~KMSKSlGNv---------------I~p~~vi~~~~~~~~~~~yGaD~lR~~l~~~~~~~-d~~~s 659 (974)
T PLN02843 596 KSVLTHGFVLDEKGFKMSKSLGNV---------------VDPRLVIEGGKNQKQEPAYGADVLRLWVASVDYTG-DVLIG 659 (974)
T ss_pred ceEEEeccEECCCCCCcCCCCCCc---------------CCHHHHHhhccccccccccChHHHHHHHHhcccCC-CceeC
Confidence 35667776 567999999999983 345555552 288999999998766653 55666
Q ss_pred HhhHH
Q 003751 567 LDRLE 571 (798)
Q Consensus 567 ~~~Le 571 (798)
.+.|.
T Consensus 660 ~~~l~ 664 (974)
T PLN02843 660 PQILK 664 (974)
T ss_pred HHHHH
Confidence 66665
No 143
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=82.64 E-value=2.4 Score=53.14 Aligned_cols=90 Identities=24% Similarity=0.262 Sum_probs=62.5
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHHc--CCEEEEEeecCC-------------------------cc----c---chHHH
Q 003751 281 PPEPNGYLHIGHAKAMFVDFGLAKER--GGYCYLRYDDTN-------------------------PE----A---EKKEY 326 (798)
Q Consensus 281 aPsPtG~LHIGharaal~n~l~Ar~~--~G~~iLRidDTD-------------------------p~----R---e~~e~ 326 (798)
||..||.+|||||.+=++-+.+.|.+ .|..+-|.=.=| .+ . ...++
T Consensus 57 PPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~ 136 (933)
T COG0060 57 PPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQ 136 (933)
T ss_pred CCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHH
Confidence 99999999999999999988887742 343333222212 11 1 13467
Q ss_pred HHHHHHHHHHcCCC--CCcc--cCCchhHHHHHHHHHHHHHcCCcccc
Q 003751 327 IDHIEEIVQWMGWE--PFKI--TYTSDYFQELYELAVELIRRGHAYVD 370 (798)
Q Consensus 327 ~~~I~edL~wLGl~--pd~i--~yqSd~~~~~ye~a~~LI~~G~AY~C 370 (798)
++...+++..||+- |+.+ |..-+|.+.......+|.++|+.|.-
T Consensus 137 v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg 184 (933)
T COG0060 137 VDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRG 184 (933)
T ss_pred HHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecC
Confidence 77788899999984 5554 44556666666777899999999964
No 144
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=81.82 E-value=3.1 Score=52.57 Aligned_cols=56 Identities=14% Similarity=0.066 Sum_probs=38.9
Q ss_pred eeee-ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHH
Q 003751 500 EYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 572 (798)
Q Consensus 500 ~f~~-Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~ 572 (798)
.+|+ ++.+|.||||++||. .+...+.++ |.+.++|-|++. +-...+..++.+.|.+
T Consensus 581 ~HG~vld~~G~KMSKSlGNv---------------IdP~~ii~~-yGaDalR~~ll~-~~~~~D~~~s~~~l~~ 637 (912)
T PRK05743 581 THGFTVDGKGRKMSKSLGNV---------------IDPQDVIKK-YGADILRLWVAS-TDYSGDVRISDEILKQ 637 (912)
T ss_pred EeeeEECCCCCCCCCCCCCc---------------CCHHHHHHh-cChHHHHHHHHh-cCCCCCeeecHHHHHH
Confidence 3566 456999999999983 234445543 889999999987 3334455677666654
No 145
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=79.14 E-value=4.7 Score=51.29 Aligned_cols=59 Identities=15% Similarity=0.093 Sum_probs=41.0
Q ss_pred ceeeeeee-cCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHH
Q 003751 497 YVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 572 (798)
Q Consensus 497 ~~w~f~~L-n~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~ 572 (798)
..+-||++ +.+|.|||||+||. .....+.. .|.+.++|-|++...+ ..+..++.+.|.+
T Consensus 616 ~V~~HG~vld~~G~KMSKSlGNv---------------IdP~~ii~-~yGaD~lRl~lls~~~-~~D~~fs~~~l~~ 675 (961)
T PRK13804 616 AVLTHGFTLDEKGEKMSKSLGNT---------------VSPQDVIK-QSGADILRLWVASVDY-SDDQRIGKEILKQ 675 (961)
T ss_pred hEEEeccEECCCCCCccCCCCCc---------------CCHHHHHH-hcCHHHHHHHHHhCCC-CCCcccCHHHHHH
Confidence 46667775 56999999999983 23344444 3889999999987544 3455677666554
No 146
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=78.95 E-value=4 Score=52.97 Aligned_cols=63 Identities=14% Similarity=0.109 Sum_probs=41.8
Q ss_pred eeee-ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCC-CCCccccHhhHHHHHHHh
Q 003751 500 EYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGIS-RSDSLIRLDRLEYHIREE 577 (798)
Q Consensus 500 ~f~~-Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s-~~~~~~~~~~Le~~ir~~ 577 (798)
-+|+ |+.+|+|||||+||.. || ..+.. .|-+.|+|-|++..+.. ..+..++.+.+.+..+.+
T Consensus 709 vHG~Vld~dG~KMSKSlGNvI----------DP-----~evI~-kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~ 772 (1205)
T PTZ00427 709 CNGLVLASDGKKMSKRLKNYP----------DP-----LYILD-KYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKSF 772 (1205)
T ss_pred EccEEEcCCCCCcccCCCCCC----------CH-----HHHHH-hcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHHH
Confidence 3555 5679999999999841 23 22333 37789999999876442 344467777776666666
Q ss_pred h
Q 003751 578 L 578 (798)
Q Consensus 578 ~ 578 (798)
+
T Consensus 773 l 773 (1205)
T PTZ00427 773 I 773 (1205)
T ss_pred H
Confidence 4
No 147
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=78.88 E-value=5.6 Score=49.64 Aligned_cols=66 Identities=20% Similarity=0.196 Sum_probs=45.9
Q ss_pred HhCCCCCceeeeee---ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCcccc
Q 003751 490 ALGLYQPYVWEYSR---LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 566 (798)
Q Consensus 490 aLg~~~P~~w~f~~---Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~ 566 (798)
+|.-..|+..-|-| ++.+|+||||++||-. || ..+.++ |-..|+|-+++.++....+..++
T Consensus 502 ~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvI----------DP-----~d~I~~-yGaDAlRf~la~~~~~G~Di~~~ 565 (877)
T COG0525 502 HLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVI----------DP-----LDVIDK-YGADALRFTLASLASPGRDINFD 565 (877)
T ss_pred HhcCCCCccEEEEeeeEEcCCCCCCcccCCCcC----------CH-----HHHHHH-hChHHHHHHHHhccCCCcccCcC
Confidence 44446786655544 5889999999999832 33 233333 66789998888876665666788
Q ss_pred HhhHH
Q 003751 567 LDRLE 571 (798)
Q Consensus 567 ~~~Le 571 (798)
+..++
T Consensus 566 ~~~~~ 570 (877)
T COG0525 566 EKRVE 570 (877)
T ss_pred HHHHH
Confidence 87777
No 148
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=75.99 E-value=4.8 Score=43.98 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=47.4
Q ss_pred CCCCCcCchhHHHHHHHHHHHHH---HcCCEEEEEeecCC------cccchHHHHHHHHHHHHHcCCCCCc--ccCCchh
Q 003751 282 PEPNGYLHIGHAKAMFVDFGLAK---ERGGYCYLRYDDTN------PEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDY 350 (798)
Q Consensus 282 PsPtG~LHIGharaal~n~l~Ar---~~~G~~iLRidDTD------p~Re~~e~~~~I~edL~wLGl~pd~--i~yqSd~ 350 (798)
--|||.+||||-..|+-+|.--. ..+-.+++-+-|.. +++....+.-.+...|-..|++|.+ ..+||+-
T Consensus 20 IQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~lF~QS~V 99 (347)
T KOG2713|consen 20 IQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSSLFVQSDV 99 (347)
T ss_pred cCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccceeeeeccc
Confidence 36999999999999999996544 23345777777764 1223334444444456677999985 6788873
No 149
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=75.38 E-value=6 Score=47.71 Aligned_cols=73 Identities=15% Similarity=0.038 Sum_probs=41.1
Q ss_pred cceEecCcccccchhhHHHHHH--HhCCCCC--ceeeeee-ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHC
Q 003751 468 ITHSLCTLEFETRRASYFWLLH--ALGLYQP--YVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR 542 (798)
Q Consensus 468 ITHviRG~E~~~~t~~q~~L~~--aLg~~~P--~~w~f~~-Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrr 542 (798)
++-.+-|.|++..- .+..|+. +|--..| ....+|+ ++.+|+|||||+||. .+...+.++
T Consensus 515 ~D~~~~G~D~~~~W-~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNv---------------i~p~~ii~~ 578 (601)
T PF00133_consen 515 VDLYIEGKDQIRGW-FQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNV---------------IDPEDIIEK 578 (601)
T ss_dssp BSEEEEEGGGTTTH-HHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB-----------------BHHHHHHH
T ss_pred cccccCCccchhhH-HHHhHhhccccccCCchheeeecccccccceeecccCCCcc---------------cCHHHHHHH
Confidence 44455566655332 2222322 3332333 3344565 578999999999983 466677765
Q ss_pred CCChHHHHHHHHHcC
Q 003751 543 GVTSTSINAFVQGIG 557 (798)
Q Consensus 543 G~~PeAI~~fl~~lG 557 (798)
|-+.++|-|++..+
T Consensus 579 -yGaD~lRl~~~~~~ 592 (601)
T PF00133_consen 579 -YGADALRLWLASSA 592 (601)
T ss_dssp -T-HHHHHHHHHHHS
T ss_pred -hCcHHHHHHHHhcC
Confidence 88999999988554
No 150
>PLN02882 aminoacyl-tRNA ligase
Probab=73.50 E-value=7.3 Score=50.54 Aligned_cols=68 Identities=7% Similarity=-0.018 Sum_probs=41.0
Q ss_pred CCCCCcee-eeeee-cCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCC-CccccHh
Q 003751 492 GLYQPYVW-EYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS-DSLIRLD 568 (798)
Q Consensus 492 g~~~P~~w-~f~~L-n~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~-~~~~~~~ 568 (798)
|...|..+ .+|++ +.+|+|||||+||. .....+..+ |.+.|+|-|++....... +..++.+
T Consensus 594 ~~~pfk~VivhG~vlde~G~KMSKSlGNv---------------IdP~evi~~-YGADaLR~~Ll~s~~~~~~d~~fs~~ 657 (1159)
T PLN02882 594 DKPAFKNLICNGLVLAEDGKKMSKSLKNY---------------PDPNEVIDK-YGADALRLYLINSPVVRAEPLRFKEE 657 (1159)
T ss_pred CCCCcceeEEccEEECCCCCCcccCCCCC---------------CCHHHHHHH-hCcHHHHHHHHhCCcccCcCcccCHH
Confidence 44444322 35664 55899999999984 222334443 789999999987654322 2345555
Q ss_pred hHHHHHH
Q 003751 569 RLEYHIR 575 (798)
Q Consensus 569 ~Le~~ir 575 (798)
.+.+.++
T Consensus 658 ~v~~~~~ 664 (1159)
T PLN02882 658 GVFGVVK 664 (1159)
T ss_pred HHHHHHH
Confidence 5554433
No 151
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=70.17 E-value=10 Score=47.45 Aligned_cols=48 Identities=19% Similarity=0.075 Sum_probs=36.0
Q ss_pred eeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHH
Q 003751 510 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 573 (798)
Q Consensus 510 KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 573 (798)
|||||+|| ..+...+.++ |.+.++|-|++..|-...+..++.+.|+++
T Consensus 570 KMSKS~GN---------------~i~p~~~i~~-ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~ 617 (805)
T PRK00390 570 KMSKSKGN---------------VVDPDDIIEK-YGADTARLFEMFAGPPEKDLEWSDSGVEGA 617 (805)
T ss_pred EeCCCCCC---------------CCCHHHHHHH-cChHHHHHHHHhcCCccCCcccCHHHHHHH
Confidence 99999998 3466676665 999999999988764445556676666655
No 152
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=69.25 E-value=4.4 Score=50.79 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=35.6
Q ss_pred eeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHH
Q 003751 510 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 573 (798)
Q Consensus 510 KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 573 (798)
|||||+|| ..++..+.++ |.+.++|-|++..+-...+..++.+.++.+
T Consensus 604 KMSKS~GN---------------~v~p~~ii~~-ygaDalRl~~l~~~~~~~d~~~~~~~l~~~ 651 (842)
T TIGR00396 604 KMSKSKGN---------------GIDPQEIVKK-HGADALRLYIMFMGPIAASLEWNDSGLEGA 651 (842)
T ss_pred hhhhcCCC---------------cCCHHHHHHH-cCchHHHHHHHhcCCcCCCCccCHHHHHHH
Confidence 99999998 3567777765 889999999987654445555666666543
No 153
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=63.53 E-value=8.3 Score=48.01 Aligned_cols=44 Identities=11% Similarity=0.050 Sum_probs=31.7
Q ss_pred eeecC-CCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCC
Q 003751 502 SRLNV-SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 561 (798)
Q Consensus 502 ~~Ln~-~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~ 561 (798)
|++-. +|.|||||++|- .++..+.+. |-+.++|-|++..|-...
T Consensus 570 GmVl~~~g~KMSKSKgN~---------------v~p~~~i~~-yGADt~Rl~~m~~ap~~~ 614 (814)
T COG0495 570 GMVLGEEGEKMSKSKGNV---------------VDPEEAVEK-YGADTVRLYIMFAAPPEQ 614 (814)
T ss_pred ceEEecCCCccccccCCC---------------CCHHHHHHH-hCchHHHHHHHhhCChhh
Confidence 34333 799999999983 466666655 778889999988875433
No 154
>KOG2438 consensus Glutamyl-tRNA amidotransferase subunit B [Translation, ribosomal structure and biogenesis]
Probab=63.48 E-value=2.2e+02 Score=33.37 Aligned_cols=161 Identities=15% Similarity=0.137 Sum_probs=93.9
Q ss_pred HHHhcCCChhhHHHhhhCHHHHHHHHHHH--HHcccCCCCchhhhHHHHH-HHhhCC-----CC--C--CCchHHHHHHH
Q 003751 15 LFLKIGLDDRTAKNTIANNKVTANLTAVI--HEAAVTDGCERRIGNLLYT-VATKYP-----TN--A--LVHRPTLLLYI 82 (798)
Q Consensus 15 ~f~~iGl~e~ka~e~~kn~~~~~~l~~~I--~~a~~~~~~~~~~g~lly~-la~~~~-----~~--~--~~~~~~~~~yI 82 (798)
|-...||+-+.|.-++-++.+..-.++.+ .+...+. ..|..-+-+.. .+..++ ++ . .+..+.|+..+
T Consensus 327 L~e~~gl~~k~a~~L~~~~~~~~~~~d~v~i~k~~ae~-~~k~~~~Wi~~~~~g~lrq~~ls~~~~~~~p~~la~ll~ll 405 (505)
T KOG2438|consen 327 LVEQYGLSAKDAVTLANEVELLEFYKDSVRIIKYKAET-TPKLITYWIKEEFLGYLRQIALSPNQSIVTPRQLADLLKLL 405 (505)
T ss_pred HHHhhccchhhhhhhhcchhHHHHHhhhhhhhhhcccc-cccchHHHHHHHHHHHHhhccCCccccccChHHHHHHHHHh
Confidence 46779999999999999988877664332 2222211 12222221111 111111 11 1 12356777888
Q ss_pred hcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhc--cccchhhhHHHHH
Q 003751 83 VSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELR--YRTNVGDLFAHVR 160 (798)
Q Consensus 83 ~~~~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~~R--Y~~n~g~l~~~~r 160 (798)
-++.|.... ...-+..+.+++ +..+...+-++--.+-.=.|++|++.|..++++|-..+.+-| -.-.++.+.|.+.
T Consensus 406 ~~~~Is~~~-ak~ll~~l~~~~-~~~~~s~LIeek~l~~I~dp~eIe~lv~~vm~~h~k~ve~~rsGk~k~~~~l~G~vm 483 (505)
T KOG2438|consen 406 SEETISALS-AKQLLRHLLKNP-GVMTVSILIEEKRLWQIRDPAEIEELVRSVMEKHPKQVEQLRSGKTKSIKRLIGLVM 483 (505)
T ss_pred hhhhhhHHH-HHHHHHHHHhCC-CcCCHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 888876532 222233333444 222444444444334444999999999999999888765433 3334667777775
Q ss_pred hh-CCCCChhhHHHHHHHH
Q 003751 161 KR-LPWADPKIVKQLIDAR 178 (798)
Q Consensus 161 ~~-lkwad~~~~k~~~d~~ 178 (798)
+. -.-|+++++..++.+.
T Consensus 484 k~s~g~a~p~~le~~l~~~ 502 (505)
T KOG2438|consen 484 KSSQGRANPKDLEKILEEL 502 (505)
T ss_pred HHhhcCCCHHHHHHHHHHH
Confidence 54 7889999988877654
No 155
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=62.73 E-value=0.73 Score=51.05 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=30.5
Q ss_pred cCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCC
Q 003751 525 VDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 561 (798)
Q Consensus 525 v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~ 561 (798)
+++|++|+..++..|+++|++|+++++|+...|++..
T Consensus 258 ~r~~g~~~~~~l~~L~~lG~~~~~~~e~~~~~~~~~~ 294 (314)
T PF00749_consen 258 YREWGDPPEATLNYLARLGWSPEAIREFFSLDELIKQ 294 (314)
T ss_dssp HHHTT-THHHHHHHHHHTTB-HCTHHCHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHhcCCcchhhhhcCHHHHHHH
Confidence 4579999999999999999999999999988776544
No 156
>PLN02381 valyl-tRNA synthetase
Probab=62.30 E-value=20 Score=46.21 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=32.2
Q ss_pred CCCcCch--hHHHHHHHHHHHHHHcCCEEEEEeecCC------c----ccchHHHHHHHHHHHHHcCCC
Q 003751 284 PNGYLHI--GHAKAMFVDFGLAKERGGYCYLRYDDTN------P----EAEKKEYIDHIEEIVQWMGWE 340 (798)
Q Consensus 284 PtG~LHI--Gharaal~n~l~Ar~~~G~~iLRidDTD------p----~Re~~e~~~~I~edL~wLGl~ 340 (798)
=||..|+ ||.- -.|.+++.||=.++-=||+-- . .....++-+.|+++|+-.|+-
T Consensus 378 GTG~V~i~PaHd~---~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l 443 (1066)
T PLN02381 378 GTGAVKITPAHDP---NDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLY 443 (1066)
T ss_pred CCCcEEecCCCCh---HHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCE
Confidence 5677777 3332 357777877754444333311 0 123456778889999988874
No 157
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=61.89 E-value=13 Score=47.58 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=33.3
Q ss_pred CCCcCch--hHHHHHHHHHHHHHHcCCEEEEEeecCC-----c----ccchHHHHHHHHHHHHHcCCC
Q 003751 284 PNGYLHI--GHAKAMFVDFGLAKERGGYCYLRYDDTN-----P----EAEKKEYIDHIEEIVQWMGWE 340 (798)
Q Consensus 284 PtG~LHI--Gharaal~n~l~Ar~~~G~~iLRidDTD-----p----~Re~~e~~~~I~edL~wLGl~ 340 (798)
-||..|+ ||.- -.|..++.||=.++-=|++-- . .....++-+.|.++|+..|+-
T Consensus 312 GTG~V~~~Pahd~---~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l 376 (995)
T PTZ00419 312 GTGAVKITPAHDP---NDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLL 376 (995)
T ss_pred CCCCeEeCCCCCh---HHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCE
Confidence 3777777 3432 367778887744443333211 1 133567788899999998874
No 158
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=60.43 E-value=18 Score=44.28 Aligned_cols=109 Identities=22% Similarity=0.283 Sum_probs=66.1
Q ss_pred CcHHHHHHhhhhcCC-eeEEEeCCCCCCcCchhHHHHHHHHH-----HHHHHcCCEEEEEeecCC------------ccc
Q 003751 260 NTKEVLDKHLEVTGG-NVLTRFPPEPNGYLHIGHAKAMFVDF-----GLAKERGGYCYLRYDDTN------------PEA 321 (798)
Q Consensus 260 ~~~~~~~~hl~~~~g-~v~tRFaPsPtG~LHIGharaal~n~-----l~Ar~~~G~~iLRidDTD------------p~R 321 (798)
..++.+...|...++ .++.- +.+|.||||||+.-++-+ ..|...+..|++=.|--- ++.
T Consensus 44 ~~~~~~~~qls~~q~~~f~L~---danG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~ 120 (937)
T KOG0433|consen 44 QPPEILSSQLSDQQRVEFELK---DANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTES 120 (937)
T ss_pred CChHHHHHHHhhccCceEEEe---ccCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhc
Confidence 347777777766544 33333 389999999999887644 444444444444333221 011
Q ss_pred c---------------hHHHHHHHHHHHHHcCCC--CCc--ccCCchhHHHHHHHHHHHHHcCCccccC
Q 003751 322 E---------------KKEYIDHIEEIVQWMGWE--PFK--ITYTSDYFQELYELAVELIRRGHAYVDH 371 (798)
Q Consensus 322 e---------------~~e~~~~I~edL~wLGl~--pd~--i~yqSd~~~~~ye~a~~LI~~G~AY~C~ 371 (798)
+ ..+++..-++.+...|+- |.. ++.+.+|-..-.+...+|.++|+.|+.+
T Consensus 121 ~~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~ 189 (937)
T KOG0433|consen 121 EGSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSF 189 (937)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccC
Confidence 1 235566667778888986 444 4456666444445566889999988754
No 159
>PLN02563 aminoacyl-tRNA ligase
Probab=55.96 E-value=15 Score=46.96 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=34.6
Q ss_pred eeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhhh
Q 003751 510 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELN 579 (798)
Q Consensus 510 KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~ 579 (798)
|||||+||. .....+.++ |-+.++|-|++..+....+...+.+.++.+ +.|+.
T Consensus 723 KMSKSKGNv---------------VdP~eiI~k-YGADaLRl~ll~~ap~~dd~~w~~~~V~g~-~rfL~ 775 (963)
T PLN02563 723 KMSKSRGNV---------------VNPDDVVSE-YGADSLRLYEMFMGPLRDSKTWSTSGVEGV-HRFLG 775 (963)
T ss_pred ccccccCCc---------------CCHHHHHHH-cCcHHHHHHHHhCCCcccccccCHHHHHHH-HHHHH
Confidence 999999983 233444543 889999999998876555444554555443 34443
No 160
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=54.96 E-value=21 Score=43.70 Aligned_cols=69 Identities=25% Similarity=0.417 Sum_probs=42.7
Q ss_pred cCCeeEEEeC-CCCCCcCchhHHHHHH---HHHHHHHHcCCEEEE--EeecCCcccchHHHHHHHHHHHHHcCCCCC
Q 003751 272 TGGNVLTRFP-PEPNGYLHIGHAKAMF---VDFGLAKERGGYCYL--RYDDTNPEAEKKEYIDHIEEIVQWMGWEPF 342 (798)
Q Consensus 272 ~~g~v~tRFa-PsPtG~LHIGharaal---~n~l~Ar~~~G~~iL--RidDTDp~Re~~e~~~~I~edL~wLGl~pd 342 (798)
++.++.+-|| |--||.||+||+.++- |.-.|-|-+|-..++ -|-.|- --.....+...+.++.+|-.||
T Consensus 42 ~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTG--MPI~A~AdKLkrEie~fG~ppd 116 (1080)
T KOG0437|consen 42 SKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTG--MPIKASADKLKREIELFGCPPD 116 (1080)
T ss_pred ccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCC--CccHHhHHHHHHHHHHhCCCCC
Confidence 4456666674 7889999999999863 222344433333333 344444 2233456677778888898876
No 161
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=41.05 E-value=87 Score=33.12 Aligned_cols=28 Identities=36% Similarity=0.429 Sum_probs=24.2
Q ss_pred CCCCChhHHHHHHHhcCCChhhHHHhhh
Q 003751 4 VSKGDKSEILELFLKIGLDDRTAKNTIA 31 (798)
Q Consensus 4 ~~~~~~~~~~~~f~~iGl~e~ka~e~~k 31 (798)
++.++.+++.++..++||-..||+.+.+
T Consensus 64 l~~a~~~~l~~~I~~iGlyr~KAk~I~~ 91 (211)
T COG0177 64 LLNADEEELEELIKSIGLYRNKAKNIKE 91 (211)
T ss_pred HHcCCHHHHHHHHHhcCCcHHHHHHHHH
Confidence 4578889999999999999999998753
No 162
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=35.99 E-value=18 Score=45.77 Aligned_cols=57 Identities=14% Similarity=0.022 Sum_probs=34.4
Q ss_pred eee-ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHH
Q 003751 501 YSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 574 (798)
Q Consensus 501 f~~-Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~i 574 (798)
||. |+.+|.|||||.||.. .-..+..+ |-+.++|-|+++.-++ .+..++.+.+++..
T Consensus 592 HGfvlDe~GrKMSKSlGN~v---------------~P~~V~~~-yGADiLRLwv~ssd~~-~dl~~s~~il~~~~ 649 (933)
T COG0060 592 HGFVLDEKGRKMSKSLGNVV---------------DPQDVIDK-YGADILRLWVASSDYW-EDLRFSDEILKQVR 649 (933)
T ss_pred cccEECCCCCCccccCCCcC---------------CHHHHHHh-hCchheeeeeeecCch-hccccCHHHHHHHH
Confidence 443 7899999999999842 22333332 5566777777765532 33345555555443
No 163
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.39 E-value=3e+02 Score=30.74 Aligned_cols=86 Identities=17% Similarity=0.307 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhhCCCCChhhHH
Q 003751 93 LEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWADPKIVK 172 (798)
Q Consensus 93 l~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~~RY~~n~g~l~~~~r~~lkwad~~~~k 172 (798)
|.|.|+++.... ..-+..++++.|- =.|++++.++.-...- +...|+.-.+--|++-||+.+-|.|+..=|
T Consensus 206 l~a~i~ll~qaa-~~~~~~~l~~~~a----adPdd~~aa~~lA~~~----~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk 276 (304)
T COG3118 206 LQAQIELLEQAA-ATPEIQDLQRRLA----ADPDDVEAALALADQL----HLVGRNEAALEHLLALLRRDRGFEDGEARK 276 (304)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHH----hCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhcccccCcHHHH
Confidence 567788876543 4567788888876 5778888877766554 445788777889999999999999999999
Q ss_pred HHHHHHHHHhcCCCchh
Q 003751 173 QLIDARMYELLGERTAA 189 (798)
Q Consensus 173 ~~~d~~~l~lLgpK~~~ 189 (798)
..|+ +++++||.+..
T Consensus 277 ~lle--~f~~~g~~Dp~ 291 (304)
T COG3118 277 TLLE--LFEAFGPADPL 291 (304)
T ss_pred HHHH--HHHhcCCCCHH
Confidence 9987 89999998764
No 164
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.81 E-value=44 Score=36.95 Aligned_cols=67 Identities=18% Similarity=0.227 Sum_probs=43.6
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcc-------cchHHHHHHHHHHHHHcCCCCCcc
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPE-------AEKKEYIDHIEEIVQWMGWEPFKI 344 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~-------Re~~e~~~~I~edL~wLGl~pd~i 344 (798)
+.+| .|| ++.||+||+..+++.-++-...+..+++.++|-..- .....|...=..|+=.+|++|...
T Consensus 89 YTGR-GpS-S~smHlGHliPFiftKwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~kT 162 (397)
T KOG2145|consen 89 YTGR-GPS-SESMHLGHLIPFIFTKWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKKT 162 (397)
T ss_pred EeCC-CCC-ccccccccchhHHHHHHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcce
Confidence 4556 332 578999999999998888888899888877653210 012233333344556789988753
No 165
>COG1610 Uncharacterized conserved protein [Function unknown]
Probab=32.44 E-value=4.6e+02 Score=26.38 Aligned_cols=85 Identities=14% Similarity=0.230 Sum_probs=59.6
Q ss_pred chHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchh
Q 003751 74 HRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVG 153 (798)
Q Consensus 74 ~~~~~~~yI~~~~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~~RY~~n~g 153 (798)
++.-+..|=..|+-.=-++..+=+.-+...-+. -+|+++|..+|.+.|++--+.-. + .+|
T Consensus 61 RrdS~~~y~~agR~dLa~kE~~Ei~Ii~~ylP~---------------qLsd~e~~~~v~~aIae~Gas~~----~-dMG 120 (148)
T COG1610 61 RRDSAEEYEKAGRQDLAAKERAEIAIIEEYLPQ---------------QLSEDELRALVDAAIAEVGASSM----K-DMG 120 (148)
T ss_pred HHHHHHHHHHcCcHHHHHHHHhHHHHHHHhCcc---------------cCCHHHHHHHHHHHHHHHHHhhH----H-HHH
Confidence 566677777777766555666666666655322 28999999999999987554332 2 499
Q ss_pred hhHHHHHhh-CCCCChhhHHHHHHHH
Q 003751 154 DLFAHVRKR-LPWADPKIVKQLIDAR 178 (798)
Q Consensus 154 ~l~~~~r~~-lkwad~~~~k~~~d~~ 178 (798)
++|+.++.. -.=||+..+-..|-..
T Consensus 121 kvM~al~~k~~GkaD~~~vs~~VK~~ 146 (148)
T COG1610 121 KVMKALKPKVAGKADGGRVSKLVKEL 146 (148)
T ss_pred HHHHHHhHHhcccCcHHHHHHHHHHH
Confidence 999999976 5678888877766543
No 166
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=32.42 E-value=1.1e+02 Score=28.60 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=30.5
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhh
Q 003751 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEEN 139 (798)
Q Consensus 88 kt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~ 139 (798)
+..+.++.|++|+..-- .. -|+.+|++||+.+|++.+.+-
T Consensus 65 ~G~~K~~~A~~~v~~~L----------~~--~gi~~t~~~i~~~IEaAV~~m 104 (108)
T PF09682_consen 65 KGEEKKAEAVQYVKERL----------KK--KGIKVTDEQIEGAIEAAVKEM 104 (108)
T ss_pred CcHHHHHHHHHHHHHHH----------HH--cCCCCCHHHHHHHHHHHHHHH
Confidence 67788888888876421 11 267999999999999988763
No 167
>PLN02207 UDP-glycosyltransferase
Probab=31.32 E-value=72 Score=37.55 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=48.9
Q ss_pred CHHHH-HHHcCCCe------------eeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhhCCCCChhhHHHHH
Q 003751 109 EVDEF-EEACGVGV------------EVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWADPKIVKQLI 175 (798)
Q Consensus 109 d~~~F-e~~cGVGv------------~vt~e~i~~~v~~~~~~~k~~~~~~RY~~n~g~l~~~~r~~lkwad~~~~k~~~ 175 (798)
..+.+ .+.-|||| .|+.|+|+++|++++.+ + .++|+-|.-.+-..+|+. .++|-.=...+
T Consensus 384 ~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~----~~~~r~~a~~l~~~a~~A--~~~GGSS~~~l 456 (468)
T PLN02207 384 LNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-D----NNVVRKRVMDISQMIQRA--TKNGGSSFAAI 456 (468)
T ss_pred hhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-c----hHHHHHHHHHHHHHHHHH--hcCCCcHHHHH
Confidence 33444 55578887 36999999999999962 1 345666777777777754 34554445567
Q ss_pred HHHHHHhcCCCc
Q 003751 176 DARMYELLGERT 187 (798)
Q Consensus 176 d~~~l~lLgpK~ 187 (798)
+.-+.++.|-||
T Consensus 457 ~~~v~~~~~~~~ 468 (468)
T PLN02207 457 EKFIHDVIGIKT 468 (468)
T ss_pred HHHHHHHHhccC
Confidence 778878777765
No 168
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=25.50 E-value=1.5e+02 Score=30.27 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=32.2
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCccc------chHHHHHHHHHHHHHcCCCC
Q 003751 275 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA------EKKEYIDHIEEIVQWMGWEP 341 (798)
Q Consensus 275 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~R------e~~e~~~~I~edL~wLGl~p 341 (798)
-+.+||-| +|+||+..+ .+.+.+. .+.++=+-.-++.+ ...+-.+.|...+.-.|++.
T Consensus 3 l~~GrF~P-----~H~GHl~~i--~~a~~~~--~~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~~~~~~~~~ 66 (181)
T cd02168 3 VYIGRFQP-----FHNGHLAVV--LIALEKA--KKVIILIGSARTARNIKNPWTSEEREVMIEAALSDAGADL 66 (181)
T ss_pred EEeeccCC-----CCHHHHHHH--HHHHHHC--CeEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHHhccCCCc
Confidence 46799988 799999765 3444432 26666554433221 22344444445555556543
No 169
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=23.75 E-value=50 Score=34.53 Aligned_cols=38 Identities=24% Similarity=0.491 Sum_probs=24.9
Q ss_pred CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCc
Q 003751 273 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP 319 (798)
Q Consensus 273 ~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp 319 (798)
-|-+++||-| +|+||+..+ .+.+.+.- ..|+=|---+.
T Consensus 6 ~~v~iGRFQP-----fH~GHl~~I--~~al~~~d--evII~IGSA~~ 43 (196)
T PRK13793 6 YLVFIGRFQP-----FHLAHMQTI--EIALQQSR--YVILALGSAQM 43 (196)
T ss_pred EEEEEecCCC-----CcHHHHHHH--HHHHHhCC--EEEEEEccCCC
Confidence 3568999999 899999754 45555432 55555544443
No 170
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=23.42 E-value=63 Score=28.04 Aligned_cols=29 Identities=10% Similarity=0.296 Sum_probs=23.7
Q ss_pred CCCCChhHHHHHHHhcCCChhhHHHhhhC
Q 003751 4 VSKGDKSEILELFLKIGLDDRTAKNTIAN 32 (798)
Q Consensus 4 ~~~~~~~~~~~~f~~iGl~e~ka~e~~kn 32 (798)
.++.++...+..+..+|+++++++.+++|
T Consensus 6 ~~~~R~daA~dam~~lG~~~~~v~~vl~~ 34 (65)
T PF10440_consen 6 KGNERIDAALDAMRQLGFSKKQVRPVLKN 34 (65)
T ss_pred cCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45567777888999999999998887765
No 171
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.74 E-value=70 Score=37.21 Aligned_cols=44 Identities=27% Similarity=0.462 Sum_probs=35.2
Q ss_pred CeeEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecC
Q 003751 274 GNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDT 317 (798)
Q Consensus 274 g~v~tRF-aPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDT 317 (798)
.+|++-| +|+----||+||+|+-++..-++| .+-|.=+||+.-+
T Consensus 188 KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHv 234 (656)
T KOG4426|consen 188 KRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHV 234 (656)
T ss_pred eeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccc
Confidence 4688889 555557899999999999999998 4667778887655
No 172
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=22.65 E-value=52 Score=33.71 Aligned_cols=60 Identities=23% Similarity=0.309 Sum_probs=34.5
Q ss_pred CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCccc------chHHHHHHHHHHHHHcCCCC
Q 003751 273 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA------EKKEYIDHIEEIVQWMGWEP 341 (798)
Q Consensus 273 ~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~R------e~~e~~~~I~edL~wLGl~p 341 (798)
-|-+++||-| +|.||+..+ .+.+.+ . ...++=|--.+..+ ...+-...|.+.|+-.|++.
T Consensus 5 rgv~~GRFqP-----~H~GHl~vi--~~al~~-v-DeliI~iGSa~~~~t~~nPfTagER~~mi~~~L~~~~~~~ 70 (172)
T COG1056 5 RGVYFGRFQP-----LHTGHLYVI--KRALSK-V-DELIIVIGSAQESHTLKNPFTAGERIPMIRDRLREAGLDL 70 (172)
T ss_pred EEEEEeccCC-----ccHhHHHHH--HHHHHh-C-CEEEEEEccCcccccccCCCCccchhHHHHHHHHhcCCCc
Confidence 3568999999 999999875 455444 2 22222221111110 12344566677788777764
No 173
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=21.28 E-value=60 Score=30.67 Aligned_cols=22 Identities=23% Similarity=0.617 Sum_probs=14.7
Q ss_pred CCeeeCHHHHHHHHHHHHHhhH
Q 003751 119 VGVEVSSEDIELTVNEVFEENK 140 (798)
Q Consensus 119 VGv~vt~e~i~~~v~~~~~~~k 140 (798)
.||.||++||.++|..+...|.
T Consensus 63 ~gI~vsd~evd~~i~~ia~~n~ 84 (118)
T PF09312_consen 63 LGIKVSDEEVDEAIANIAKQNN 84 (118)
T ss_dssp CT----HHHHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHcC
Confidence 5799999999999988877754
No 174
>COG3372 Predicted nuclease of restriction endonuclease-like fold [General function prediction only]
Probab=20.50 E-value=3.4e+02 Score=31.32 Aligned_cols=107 Identities=16% Similarity=0.302 Sum_probs=76.1
Q ss_pred hHHHHHHHh-cCCChhhHHHhh------hCHHHHHHHHHHHHHccc-C--CCC-chhhhHHHHHHHhhCCCCCCCchHHH
Q 003751 10 SEILELFLK-IGLDDRTAKNTI------ANNKVTANLTAVIHEAAV-T--DGC-ERRIGNLLYTVATKYPTNALVHRPTL 78 (798)
Q Consensus 10 ~~~~~~f~~-iGl~e~ka~e~~------kn~~~~~~l~~~I~~a~~-~--~~~-~~~~g~lly~la~~~~~~~~~~~~~~ 78 (798)
+++++.|++ +|.+-..-.|.+ +|-++..-|..++..--. . +.. +..+-..|+++| +.....+|..+
T Consensus 30 ~evI~~Fks~~Gkt~geL~e~l~~le~~~~~K~VRGlA~iler~c~fe~~s~~dp~~~R~~lFe~g---~~~s~eer~~v 106 (396)
T COG3372 30 EEVIETFKSSLGKTYGELEEDLRDLEYAAKDKLVRGLAKILERECEFEVVSALDPREVRRFLFERG---PALSEEERQRV 106 (396)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHhheeeeecccCChHHHHHHHHhcC---CCCChHHHHHH
Confidence 356888986 887755444433 222677778788764332 2 444 456678899988 33445689999
Q ss_pred HHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHH
Q 003751 79 LLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIE 129 (798)
Q Consensus 79 ~~yI~~~~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~ 129 (798)
.+.+++.-=.|.+|+..|+ | ++.+++.+-..|+ .+|||++-
T Consensus 107 l~~aA~~fsvs~eeie~al-y------aDleeek~L~~~p---~itPe~Ll 147 (396)
T COG3372 107 LQEAADHFSVSPEEIEDAL-Y------ADLEEEKILVEFP---DITPEWLL 147 (396)
T ss_pred HHHHHHHhCCCHHHHHHHH-H------hccchhheeccCC---CCCHHHHH
Confidence 9999999888999999998 2 2467777777887 79999875
No 175
>COG4720 Predicted membrane protein [Function unknown]
Probab=20.23 E-value=74 Score=32.71 Aligned_cols=30 Identities=33% Similarity=0.675 Sum_probs=23.3
Q ss_pred EEe-CCCCCCcCchhHHHHHHHHHHHHHHcC
Q 003751 278 TRF-PPEPNGYLHIGHAKAMFVDFGLAKERG 307 (798)
Q Consensus 278 tRF-aPsPtG~LHIGharaal~n~l~Ar~~~ 307 (798)
.|+ -|.|+|++|+|.+--++++++|-...|
T Consensus 26 i~IPtp~~~~~i~L~da~i~las~lfGs~~G 56 (177)
T COG4720 26 IRIPTPIPNGFLTLGDAGIALASFLFGSRAG 56 (177)
T ss_pred eEecCCCCCCeeeHHHHHHHHHHHHHcchHH
Confidence 455 366669999999999999998865433
Done!