Query 003751
Match_columns 798
No_of_seqs 397 out of 2417
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 02:54:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qtq_A GLNRS, protein (glutami 100.0 2E-141 7E-146 1207.9 46.3 526 262-797 12-552 (553)
2 2hz7_A Glutaminyl-tRNA synthet 100.0 4E-137 1E-141 1214.6 48.1 523 262-796 52-634 (851)
3 3aii_A Glutamyl-tRNA synthetas 100.0 8E-119 3E-123 1022.0 36.4 454 270-783 91-548 (553)
4 4gri_A Glutamate--tRNA ligase; 100.0 2E-75 6.9E-80 668.3 18.0 312 262-598 9-344 (512)
5 2ja2_A Glutamyl-tRNA synthetas 100.0 4.3E-73 1.5E-77 644.1 21.1 311 272-611 3-347 (498)
6 2cfo_A Glutamyl-tRNA synthetas 100.0 8.2E-73 2.8E-77 642.4 20.9 294 275-598 1-319 (492)
7 1j09_A Glutamyl-tRNA synthetas 100.0 6.4E-73 2.2E-77 639.8 18.2 297 275-598 1-314 (468)
8 4g6z_A Glutamate-tRNA ligase; 100.0 1.1E-71 3.7E-76 630.0 17.7 310 274-612 24-354 (490)
9 3afh_A Glutamyl-tRNA synthetas 100.0 8.2E-70 2.8E-74 616.8 11.5 302 271-610 21-343 (488)
10 3al0_C Glutamyl-tRNA(Gln) amid 100.0 1.4E-66 4.6E-71 602.3 8.0 299 274-610 128-447 (592)
11 2o5r_A Glutamyl-tRNA synthetas 100.0 2.8E-65 9.5E-70 579.9 17.7 309 275-611 13-352 (481)
12 1nzj_A Hypothetical protein YA 100.0 2.9E-63 9.9E-68 532.6 19.6 266 273-588 3-289 (298)
13 3tl4_X Glutaminyl-tRNA synthet 100.0 1.5E-55 5.3E-60 440.9 20.2 182 8-191 3-186 (187)
14 1irx_A Lysyl-tRNA synthetase; 100.0 1.1E-29 3.7E-34 291.7 4.8 277 275-598 21-351 (523)
15 1li5_A Cysrs, cysteinyl-tRNA s 99.9 1.6E-24 5.4E-29 245.3 18.4 252 281-575 29-314 (461)
16 3tqo_A Cysteinyl-tRNA syntheta 99.9 1.4E-24 4.7E-29 245.1 16.6 249 281-575 32-317 (462)
17 3c8z_A Cysteinyl-tRNA syntheta 99.9 3.6E-22 1.2E-26 223.2 16.4 260 279-576 44-341 (414)
18 3sp1_A Cysteinyl-tRNA syntheta 99.9 1.3E-21 4.5E-26 222.1 16.6 252 281-576 49-349 (501)
19 2csx_A Methionyl-tRNA syntheta 99.8 2.6E-19 8.8E-24 204.0 15.5 270 275-576 7-345 (497)
20 2d5b_A Methionyl-tRNA syntheta 99.7 2.6E-17 8.8E-22 187.5 16.9 276 276-575 6-346 (500)
21 2dlc_X Tyrosyl-tRNA synthetase 99.7 3.2E-16 1.1E-20 174.2 12.7 193 261-518 25-235 (394)
22 1iq0_A Arginyl-tRNA synthetase 99.6 7.4E-16 2.5E-20 179.5 15.4 297 251-597 74-465 (592)
23 2x1l_A Methionyl-tRNA syntheta 99.5 1.1E-14 3.7E-19 167.0 11.3 278 276-576 15-360 (524)
24 4dlp_A Aminoacyl-tRNA syntheta 99.5 7.6E-14 2.6E-18 160.6 18.2 95 276-370 28-142 (536)
25 3h99_A Methionyl-tRNA syntheta 99.5 2.7E-13 9.3E-18 156.8 22.6 279 276-572 21-392 (560)
26 1n3l_A Tyrosyl-tRNA synthetase 99.4 1.5E-12 5.2E-17 143.7 15.8 193 261-518 23-230 (372)
27 2cyb_A Tyrosyl-tRNA synthetase 99.4 4.2E-13 1.4E-17 145.5 10.7 191 262-517 20-221 (323)
28 3fnr_A Arginyl-tRNA synthetase 99.4 2.5E-12 8.7E-17 145.6 15.7 259 273-570 29-328 (464)
29 3kfl_A Methionyl-tRNA syntheta 99.3 1.9E-11 6.6E-16 141.6 17.0 96 275-370 28-143 (564)
30 1f7u_A Arginyl-tRNA synthetase 99.3 3.7E-12 1.3E-16 148.6 9.9 250 273-598 142-482 (607)
31 2zue_A Arginyl-tRNA synthetase 99.2 3.1E-11 1E-15 141.6 13.5 98 273-370 118-295 (629)
32 3u1f_A Methionyl-tRNA syntheta 99.2 4.2E-10 1.4E-14 129.3 17.5 94 276-369 12-125 (542)
33 1rqg_A Methionyl-tRNA syntheta 99.0 6E-09 2E-13 124.1 20.2 94 276-369 5-119 (722)
34 2cya_A Tyrosyl-tRNA synthetase 98.8 5.9E-08 2E-12 106.8 14.8 193 261-516 22-244 (364)
35 2g36_A Tryptophanyl-tRNA synth 98.5 5.1E-07 1.8E-11 98.5 14.0 181 274-517 13-212 (340)
36 2zp1_A Tyrosyl-tRNA synthetase 98.5 3E-07 1E-11 99.3 11.2 111 261-380 16-133 (314)
37 2yy5_A Tryptophanyl-tRNA synth 98.5 8.9E-08 3E-12 104.8 6.1 183 276-518 7-210 (348)
38 1i6k_A TRPRS, tryptophanyl-tRN 98.3 1E-06 3.5E-11 95.7 9.5 177 276-518 4-200 (328)
39 1yi8_B Tryptophanyl-tRNA synth 98.3 9.2E-07 3.1E-11 96.9 8.3 182 274-517 23-222 (351)
40 2el7_A Tryptophanyl-tRNA synth 98.3 3.2E-06 1.1E-10 92.2 11.9 172 283-517 9-202 (337)
41 2v0c_A Aminoacyl-tRNA syntheta 97.9 2.4E-05 8.3E-10 95.0 9.9 94 276-369 36-151 (878)
42 4arc_A Leucine--tRNA ligase; l 97.8 3.3E-05 1.1E-09 93.7 9.9 94 276-369 56-171 (880)
43 1wkb_A Leucyl-tRNA synthetase; 97.8 3.6E-05 1.2E-09 92.8 9.7 94 276-369 37-178 (810)
44 3jxe_A Tryptophanyl-tRNA synth 97.6 0.00057 2E-08 75.8 13.8 183 263-517 62-260 (392)
45 1ile_A Ilers, isoleucyl-tRNA s 97.5 3E-05 1E-09 93.6 3.5 93 277-369 42-173 (821)
46 3hzr_A Tryptophanyl-tRNA synth 97.5 0.00021 7.2E-09 79.1 9.8 76 283-360 90-176 (386)
47 3tzl_A Tryptophanyl-tRNA synth 97.5 8.3E-05 2.9E-09 80.5 6.4 87 283-378 11-105 (322)
48 1ffy_A Isoleucyl-tRNA syntheta 97.4 0.00012 4E-09 89.5 6.9 94 276-369 51-178 (917)
49 1gax_A Valrs, valyl-tRNA synth 97.4 0.00025 8.6E-09 86.0 9.5 94 276-369 37-168 (862)
50 3hv0_A Tryptophanyl-tRNA synth 97.3 0.00061 2.1E-08 75.6 10.6 94 262-358 62-168 (393)
51 2ip1_A Tryptophanyl-tRNA synth 97.3 0.0013 4.5E-08 73.8 13.2 188 262-517 90-302 (432)
52 1h3f_A Tyrosyl-tRNA synthetase 97.3 0.00018 6.2E-09 80.8 6.1 191 261-517 24-239 (432)
53 1wz2_A Leucyl-tRNA synthetase; 97.2 0.00023 7.9E-09 87.4 6.1 94 276-369 37-178 (967)
54 2cyc_A Tyrosyl-tRNA synthetase 97.1 0.0045 1.5E-07 68.3 14.7 111 261-378 20-147 (375)
55 3a04_A Tryptophanyl-tRNA synth 97.1 0.002 6.9E-08 71.0 11.9 117 248-380 51-177 (372)
56 3tze_A Tryptophanyl-tRNA synth 97.0 0.0017 5.7E-08 72.4 9.8 69 283-352 109-188 (406)
57 2jan_A Tyrosyl-tRNA synthetase 97.0 0.014 4.7E-07 65.6 16.9 221 262-556 21-272 (432)
58 3i05_A Tryptophanyl-tRNA synth 97.0 0.0012 4.2E-08 73.3 8.0 69 283-352 86-165 (395)
59 2j5b_A Tyrosyl-tRNA synthetase 96.9 0.0029 9.9E-08 69.2 10.7 89 261-351 27-127 (348)
60 3foc_A Tryptophanyl-tRNA synth 96.9 0.0025 8.7E-08 71.8 10.3 108 262-380 79-202 (451)
61 3vgj_A Tyrosyl-tRNA synthetase 96.7 0.018 6.1E-07 63.5 14.4 89 261-351 43-143 (373)
62 1r6t_A Tryptophanyl-tRNA synth 96.5 0.0039 1.3E-07 70.9 8.2 188 262-517 143-356 (477)
63 3p0j_A Tyrosyl-tRNA synthetase 96.5 0.013 4.4E-07 69.4 12.9 191 261-517 27-237 (690)
64 1jil_A Tyrrs, tyrosyl-tRNA syn 96.5 0.057 1.9E-06 60.4 17.1 219 261-556 20-271 (420)
65 3al0_B Aspartyl/glutamyl-tRNA( 96.3 0.034 1.1E-06 63.1 13.9 159 11-178 305-478 (482)
66 3ip4_B Aspartyl/glutamyl-tRNA( 96.2 0.063 2.1E-06 60.9 15.7 167 10-184 297-477 (483)
67 1r6u_A Tryptophanyl-tRNA synth 96.1 0.016 5.4E-07 65.2 9.7 88 262-352 96-195 (437)
68 2ts1_A Tyrosyl-tRNA synthetase 95.9 0.17 5.7E-06 56.7 17.2 81 467-556 185-270 (419)
69 2yxn_A Tyrosyl-tRNA synthetase 95.9 0.044 1.5E-06 59.2 12.0 89 260-351 20-130 (322)
70 2pid_A Tyrosyl-tRNA synthetase 95.5 0.059 2E-06 59.0 11.1 98 467-578 210-310 (356)
71 3h0l_B Aspartyl/glutamyl-tRNA( 94.8 0.069 2.3E-06 60.5 9.3 162 10-179 300-475 (478)
72 1ile_A Ilers, isoleucyl-tRNA s 94.8 0.028 9.7E-07 67.8 6.5 67 497-579 577-644 (821)
73 1zq1_C Glutamyl-tRNA(Gln) amid 94.3 0.03 1E-06 65.4 4.8 163 10-182 460-630 (633)
74 3prh_A Tryptophanyl-tRNA synth 94.2 0.054 1.9E-06 60.0 6.6 87 283-378 43-137 (388)
75 3sz3_A Tryptophanyl-tRNA synth 93.3 0.089 3E-06 57.3 6.1 93 275-378 8-108 (341)
76 3n9i_A Tryptophanyl-tRNA synth 92.6 0.11 3.7E-06 56.8 5.4 74 275-352 17-99 (346)
77 2d6f_C Glutamyl-tRNA(Gln) amid 92.0 0.032 1.1E-06 65.0 0.4 159 10-179 448-615 (619)
78 2hz7_A Glutaminyl-tRNA synthet 92.0 0.029 9.9E-07 67.5 0.0 154 15-178 687-849 (851)
79 1wz2_A Leucyl-tRNA synthetase; 91.7 0.17 5.9E-06 62.2 6.5 63 496-574 635-698 (967)
80 1wkb_A Leucyl-tRNA synthetase; 90.7 0.34 1.2E-05 58.3 7.6 63 495-573 634-697 (810)
81 1ng6_A Hypothetical protein YQ 90.6 0.62 2.1E-05 44.8 7.8 61 112-178 85-146 (148)
82 1ffy_A Isoleucyl-tRNA syntheta 89.8 0.38 1.3E-05 58.8 7.0 60 497-573 581-641 (917)
83 1gax_A Valrs, valyl-tRNA synth 89.3 0.4 1.4E-05 58.2 6.6 61 497-573 514-575 (862)
84 3p0j_A Tyrosyl-tRNA synthetase 89.1 0.79 2.7E-05 54.3 8.7 82 280-362 387-484 (690)
85 4arc_A Leucine--tRNA ligase; l 83.3 1.4 4.7E-05 53.7 6.7 48 510-573 639-686 (880)
86 1y42_X Tyrosyl-tRNA synthetase 74.9 8.9 0.00031 42.3 9.4 52 262-316 53-105 (392)
87 2v0c_A Aminoacyl-tRNA syntheta 74.8 3.3 0.00011 50.4 6.4 49 509-573 636-684 (878)
88 4dvc_A Thiol:disulfide interch 61.8 12 0.00042 35.0 6.2 43 5-47 102-144 (184)
89 2lhi_A Calmodulin, serine/thre 56.0 38 0.0013 32.1 8.6 47 89-135 82-129 (176)
90 1h8b_A ACT-EF34, alpha-actinin 48.4 29 0.00098 29.1 5.6 43 86-135 5-47 (75)
91 2ehb_A Calcineurin B-like prot 45.3 66 0.0023 30.5 8.5 51 88-138 108-163 (207)
92 2p12_A Hypothetical protein DU 43.6 30 0.001 34.2 5.6 53 108-167 120-175 (176)
93 2lmt_A Calmodulin-related prot 40.1 79 0.0027 28.4 7.7 49 87-135 79-128 (148)
94 2d8n_A Recoverin; structural g 39.9 1.3E+02 0.0043 28.4 9.5 111 7-118 16-134 (207)
95 3u0k_A Rcamp; fluorescent prot 39.0 70 0.0024 35.8 8.3 47 89-135 373-420 (440)
96 2zfd_A Calcineurin B-like prot 36.7 2.4E+02 0.0081 27.2 11.2 51 88-138 119-174 (226)
97 1s1e_A KV channel interacting 35.6 1E+02 0.0035 30.1 8.3 29 89-117 123-151 (224)
98 3khe_A Calmodulin-like domain 34.7 36 0.0012 31.6 4.6 48 87-135 119-166 (191)
99 1wdc_B Scallop myosin; calcium 34.5 98 0.0034 27.6 7.4 47 88-134 84-131 (156)
100 2lv7_A Calcium-binding protein 34.5 19 0.00067 31.4 2.4 45 91-135 36-81 (100)
101 1s6c_A KV4 potassium channel-i 34.3 1E+02 0.0035 28.3 7.7 29 89-117 90-118 (183)
102 3i5g_C Myosin catalytic light 34.0 47 0.0016 31.0 5.2 50 86-135 80-130 (159)
103 2kz2_A Calmodulin, CAM; TR2C, 33.4 79 0.0027 26.5 6.1 61 73-135 13-74 (94)
104 3ox6_A Calcium-binding protein 33.1 2.4E+02 0.0082 24.4 9.7 46 90-135 87-134 (153)
105 2l2e_A Calcium-binding protein 33.1 2.9E+02 0.0098 25.3 12.1 113 5-118 6-126 (190)
106 3cuq_A Vacuolar-sorting protei 32.3 1.3E+02 0.0046 30.8 8.5 59 9-68 12-81 (234)
107 3mse_B Calcium-dependent prote 31.4 1.8E+02 0.0062 26.8 9.0 46 90-136 107-152 (180)
108 2ot3_A RAB5 GDP/GTP exchange f 30.6 81 0.0028 32.8 6.8 74 50-124 187-268 (274)
109 1fpw_A Yeast frequenin, calciu 30.1 1.9E+02 0.0065 26.5 8.8 111 4-118 5-126 (190)
110 3u43_A Colicin-E2 immunity pro 28.9 1E+02 0.0035 27.4 6.0 62 77-139 17-78 (94)
111 3fs7_A Parvalbumin, thymic; ca 28.9 2.2E+02 0.0074 23.8 8.3 48 88-135 39-90 (109)
112 1g8i_A Frequenin, neuronal cal 27.8 2.1E+02 0.0071 26.2 8.6 27 4-30 5-31 (190)
113 2mys_B Myosin; muscle protein, 27.4 2.1E+02 0.007 25.7 8.4 48 88-135 92-140 (166)
114 2pvb_A Protein (parvalbumin); 26.6 80 0.0027 26.6 5.0 48 88-135 38-89 (108)
115 2efe_A Similarity to vacuolar 26.0 1.2E+02 0.0041 31.3 7.1 66 50-115 184-256 (267)
116 2jul_A Calsenilin; EF-hand, ca 25.7 3.2E+02 0.011 26.9 10.1 30 88-117 162-191 (256)
117 2bl0_C Myosin regulatory light 25.4 2.7E+02 0.0092 24.0 8.5 48 88-135 76-124 (142)
118 3kzq_A Putative uncharacterize 25.3 96 0.0033 30.0 5.9 45 3-47 119-163 (208)
119 1pva_A Parvalbumin; calcium bi 24.4 91 0.0031 26.2 5.0 48 88-135 39-90 (110)
120 3pm8_A PFCDPK2, calcium-depend 24.1 43 0.0015 32.0 3.1 49 87-135 125-176 (197)
121 1k2h_A S100A1, S-100 protein, 23.8 72 0.0025 26.1 4.1 45 91-135 9-61 (93)
122 2ct9_A Calcium-binding protein 23.6 63 0.0022 30.8 4.2 50 89-138 111-162 (208)
123 3j04_B Myosin regulatory light 22.7 1.2E+02 0.0043 26.3 5.7 48 88-135 73-121 (143)
124 3mn2_A Probable ARAC family tr 22.5 2E+02 0.0067 24.7 6.8 41 91-135 2-42 (108)
125 2k9s_A Arabinose operon regula 22.4 1.7E+02 0.0058 25.1 6.4 42 91-136 3-45 (107)
126 3i5g_B Myosin regulatory light 22.3 55 0.0019 30.3 3.3 47 88-134 82-129 (153)
127 1y42_X Tyrosyl-tRNA synthetase 21.9 1.3E+02 0.0044 33.1 6.6 51 467-517 232-300 (392)
128 2qac_A Myosin A tail domain in 21.2 2.1E+02 0.0071 25.0 6.9 48 88-135 81-129 (146)
129 1un2_A DSBA, thiol-disulfide i 21.1 99 0.0034 30.2 5.1 40 7-46 4-43 (197)
130 3ff5_A PEX14P, peroxisomal bio 20.7 1.3E+02 0.0044 24.1 4.5 41 90-134 10-53 (54)
131 1tiz_A Calmodulin-related prot 20.2 70 0.0024 24.1 3.0 44 92-135 2-46 (67)
132 2dk8_A DNA-directed RNA polyme 20.2 48 0.0016 28.6 2.2 53 90-146 12-65 (81)
133 2mys_C Myosin; muscle protein, 20.1 4.1E+02 0.014 22.7 8.7 47 88-134 82-129 (149)
No 1
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=100.00 E-value=1.9e-141 Score=1207.95 Aligned_cols=526 Identities=49% Similarity=0.866 Sum_probs=493.4
Q ss_pred HHHHHHhhhhc-CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCC
Q 003751 262 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 340 (798)
Q Consensus 262 ~~~~~~hl~~~-~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~ 340 (798)
..++++.|+.. .++||||||||||||||||||||||+||++||+|||+|+||||||||+|+.++|+++|+++|+|||+.
T Consensus 12 ~~~i~~dl~~~~~~~v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDTD~~R~~~e~~~~I~edL~wLGl~ 91 (553)
T 1qtq_A 12 RQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFH 91 (553)
T ss_dssp HHHHHHHHHHTSCSSCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhHhhcCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCchhcCHHHHHHHHHHHHHcCCC
Confidence 66788888764 35799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-cccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhc----cCCCCCCCCCChHHHHHHHHHhhcCcccCCceE
Q 003751 341 PF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 415 (798)
Q Consensus 341 pd-~i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~----~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~ 415 (798)
|| .++|||+||++||++|++||++|+||+|+||+++|++.|+ ++++++||+++++|++.+|++|++|.+.+|+++
T Consensus 92 wde~~~~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~g~~~ 171 (553)
T 1qtq_A 92 WSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKAC 171 (553)
T ss_dssp CSSSCEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSCE
T ss_pred CCCCCeehcccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhCCCccCCceE
Confidence 96 6899999999999999999999999999999999999885 578899999999999999999999998889999
Q ss_pred EEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCC-
Q 003751 416 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY- 494 (798)
Q Consensus 416 lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~- 494 (798)
||+|+++.+++.+|+|+|+||+...+||+|||+|+||||||||||||||+|||||||||.||++|++.|.||+++||++
T Consensus 172 lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~la~vvDDh~~GITHviRg~e~~~n~~~q~~l~~alg~~~ 251 (553)
T 1qtq_A 172 LRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPV 251 (553)
T ss_dssp EEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHTTCSEEEEEGGGTTTHHHHHHHHHTSCCSC
T ss_pred EEEecccccCCCCCCCcEEEEecCCCCCccCCCCccccccccccEEEeccCCcceEeeccchhhhHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceeeeeeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHH
Q 003751 495 QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 574 (798)
Q Consensus 495 ~P~~w~f~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~i 574 (798)
.|.||+|+|||++|+|||||+++++|++|+|+||||||++||++||++||+|+||++||+++||++++..+++..|++++
T Consensus 252 ~P~~~~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~~~~~~e~~~le~~~ 331 (553)
T 1qtq_A 252 HPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCI 331 (553)
T ss_dssp CCEEEEECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHHHHHHHH
T ss_pred CCCeEEEEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCCCCCccccchhhHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred HHhhhccCCcceeEecceeEEEEeCCCCceeeeccccCCCCCCCCCCceeEeccccceeeecccccccCCccccCcCCCC
Q 003751 575 REELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGK 654 (798)
Q Consensus 575 r~~~~~~~~R~~av~dp~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~ 654 (798)
+..++..++|+|+||||+||.|+|+| +..+.+++|+||. +|++|.|.++|++.||||++||++.++++|+||+||+
T Consensus 332 ~~~l~~~~~r~~av~d~~Kl~~~N~~-~~~~~~~~p~~p~---~~~~g~r~~~~~~~i~ie~~Df~e~~~~~~~rl~~g~ 407 (553)
T 1qtq_A 332 REDLNENAPRAMAVIDPVKLVIENYQ-GEGEMVTMPNHPN---KPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGK 407 (553)
T ss_dssp HHHHHHHSCEECEESSEEEEEBTTCC-SSCEEEEEESCSS---CGGGCEEEEEECSEEEEETTTEESSCCTTCCSEETTS
T ss_pred HhCcccccccccceeccceEEEEcCC-CceEEEEecCCCC---ChHHhhhhHhhCceEEEEHHHhhccCccccccCCCCC
Confidence 98888889999999999999999998 5556788999988 7999999999999999999999999999999999999
Q ss_pred EEEEeeeeeEEEEEeeecCCCCCEEEEEEEEcCCC-------CCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCC
Q 003751 655 SVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSK-------KTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPA 727 (798)
Q Consensus 655 ~v~l~~~~~i~~~~~~~~~~~g~v~e~~~~~~~~~-------~~K~k~~I~WV~~~~~~~~~v~~evr~y~~Lf~~~~p~ 727 (798)
+|+|+++|+|+|++++ +|++|+|++|+|+|+++. .+|+|++|||||+ .++++||||+|++||++++|+
T Consensus 408 ~vrL~~~~~i~~~~~~-kd~~g~v~~~~~~~~~~~~~g~~~~~~k~k~~ihWv~~----~~~~~~~~~~yd~L~~~~~p~ 482 (553)
T 1qtq_A 408 EVRLRNAYVIKAERVE-KDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSA----AHALPVEIRLYDRLFSVPNPG 482 (553)
T ss_dssp EEEETTSCEEEEEEEE-CCSSSCCCEEEECCCSSCC-----------CEECCEES----TTCEEEEEEEECCSBSSSCGG
T ss_pred EEEeccEEEEEEEEEE-EcCCCCEEEEEEEEecccccCCCccccccCCEEEEeec----CCCEeEEEEecccccCCCCCC
Confidence 9999999999999999 899999999999998852 3789999999998 578999999999999999998
Q ss_pred CccCccccCCCCCceeecceeeccccccCCCCCeEEEEEeeeEEEec-CCCCCCeeEeeecCCCCCCCCCC
Q 003751 728 ELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDK-DSTPEKLVFNRTVTLKDSFPKGG 797 (798)
Q Consensus 728 ~~~~~~~~iN~~S~~~~~~a~~e~~~~~~~~~~~~QfeR~Gyf~~D~-~s~~~~~v~n~~v~lk~~~~k~~ 797 (798)
+.++|+++|||+|++++ .|++||++.++++|++|||||+||||||+ ||+++++||||||+||++++|..
T Consensus 483 ~~~~~~~~~np~s~~~~-~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~~vfnr~v~l~~~~~~~~ 552 (553)
T 1qtq_A 483 AADDFLSVINPESLVIK-QGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVG 552 (553)
T ss_dssp GSTTGGGGBCTTSEEEE-EEEECGGGGGCCTTCEEEETTTEEEESCTTTCCSSSCEEEEEEECCCC-----
T ss_pred cCcchhhhcCCcchhhe-eeEecHhHhhCCCCCEEEEEEeeEEEECcCCCCCCCeeEEeEEEcccchhhhc
Confidence 66899999999999987 68999999999999999999999999996 89999999999999999999853
No 2
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=100.00 E-value=3.8e-137 Score=1214.62 Aligned_cols=523 Identities=41% Similarity=0.732 Sum_probs=490.6
Q ss_pred HHHHHHhhhhc-CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCC
Q 003751 262 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 340 (798)
Q Consensus 262 ~~~~~~hl~~~-~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~ 340 (798)
.++++++|+.. .+.||||||||||||||||||||||+||++||+|||+|+||||||||+|+.++|+++|+++|+|||+.
T Consensus 52 ~~ii~~dl~~g~~~~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~IledL~wLGl~ 131 (851)
T 2hz7_A 52 TEIIERDLEAGKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDLKWLGLD 131 (851)
T ss_dssp HHHHHHHHHTTSCSSCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCTTTCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhcCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCC
Confidence 77888888873 35799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-cccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhc----cCCCCCCCCCChHHHHHHHHHhhcCcccCCceE
Q 003751 341 PF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 415 (798)
Q Consensus 341 pd-~i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~----~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~ 415 (798)
|| .++|||+||+.|+++|++||++|+||+|+||+++|++.|+ ++++|+||+++++|++.+|++|++|.+.+|+++
T Consensus 132 wde~~~~qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~fe~m~~G~~~~g~~v 211 (851)
T 2hz7_A 132 WGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRRMKAGEFADGEHV 211 (851)
T ss_dssp CTTCEEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSCE
T ss_pred CCCCcccHhhhHHHHHHHHHHHHHCCCcEeecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHHHHHhcCCcccCCee
Confidence 96 6899999999999999999999999999999999999876 378889999999999999999999999999999
Q ss_pred EEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCC
Q 003751 416 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQ 495 (798)
Q Consensus 416 lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~ 495 (798)
||+|+++.+++.+++|||+||+...+||+||++|+||||||||||||||+|||||||||.||++|++.|.||+++||++.
T Consensus 212 lR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtYhfA~vVDD~~~GITHViRG~D~~~n~~~q~~l~~alG~~~ 291 (851)
T 2hz7_A 212 LRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDP 291 (851)
T ss_dssp EEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEEGGGTTTHHHHHHHHHHTTCSS
T ss_pred EEEeccccccCCCCCCcEEEEecCCCCCccCCCCccccccceeeEeeeccCCcceeecchhhhhChHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred -CceeeeeeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHH
Q 003751 496 -PYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 574 (798)
Q Consensus 496 -P~~w~f~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~i 574 (798)
|.||+|+|||++|+|||||+++++|++|+|+||||||++||++||++||+|+||++||+++||++++..+++..|++++
T Consensus 292 ~P~~~~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG~s~~~~~~e~~~le~~~ 371 (851)
T 2hz7_A 292 RPHQYEFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYENAV 371 (851)
T ss_dssp CCEEEEECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCSSCEEECHHHHHHHH
T ss_pred CCCceEEEEecCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhcCCCCCcccccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred HHhhhccCCcceeEecceeEEEEeCCCCceeeeccccCCCCCCC-------------------CCCceeEeccccceeee
Q 003751 575 REELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQAD-------------------DASAFYKVPFSNVVYIE 635 (798)
Q Consensus 575 r~~~~~~~~R~~av~dp~kl~i~N~~~~~~~~~~~p~~p~~~~~-------------------~~~g~~~v~~~~~iyIe 635 (798)
+..++..++|+|+||||+||.|.|+|++. .+++|+||+ + |++|+|.|+|+++||||
T Consensus 372 r~~l~~~~~r~~av~d~~Kl~~~N~~~~~--~~~~p~~p~---~~~~~~~~~~~~~~~~~~~~~~~g~r~v~~~~~iyie 446 (851)
T 2hz7_A 372 RDDLNHRAPRVMAVLDPVKVTLTNLDGEK--TLSLPYWPH---DVVRDSPDGLVGMPGGGRVAPEEAVRDVPLTRELYIE 446 (851)
T ss_dssp HHHHHTTCCEECEESSEEEEEETTCCSCE--EEEEESSCH---HHHHTCTTSCEECSSSCEECGGGCEEEEEECSEEEEE
T ss_pred HhcccccccccceEecceeEEEecCCCCe--EEEecCCcc---cccccccccccccccccccCccCceEEEEEcCeEEEE
Confidence 99999889999999999999999999875 788999998 5 89999999999999999
Q ss_pred cccccccCCccccCcCCCCEEEEeeeeeEEEEEeeecCCCCCEEEEEEEEcCCCCCCCCeeEEeccCCCCCCCCeeEEEE
Q 003751 636 HSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVR 715 (798)
Q Consensus 636 ~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~~~~~~~g~v~e~~~~~~~~~~~K~k~~I~WV~~~~~~~~~v~~evr 715 (798)
++||++.++++||||+||++|+|+++|+|+|++++ +|++|+|++|+|+|..+. +|+|++|||||+ .++++||||
T Consensus 447 ~~Df~e~~~~~~~rl~~g~~vrL~~~~~i~~~~~~-kd~~g~v~~~~~~~~~~~-~k~k~~ihWv~~----~~~~~~e~r 520 (851)
T 2hz7_A 447 RDDFSPAPPKGFKRLTPGGTVRLRGAGIIRADDFG-TDEAGQVTHIRATLLGED-AKAAGVIHWVSA----ERALPAEFR 520 (851)
T ss_dssp GGGBCSSCCTTCCSBCTTCEEEETTTEEEEEEEEE-ECTTSCEEEEEEEECCTT-CCCSCEECCEET----TTCEEEEEE
T ss_pred HHHhhhcccccceecCCCCEEEecCeEEEEEEEEE-ecCCCCEEEEEEEEcccC-CccCceEEEeec----CCCeeEEEE
Confidence 99999999999999999999999999999999999 888999999999996544 789999999998 568999999
Q ss_pred eccccCCCCCCCC----------------------------ccCccccCCCCCceeecceeeccccccCCCCCeEEEEEe
Q 003751 716 LFEKLFNSENPAE----------------------------LDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERL 767 (798)
Q Consensus 716 ~y~~Lf~~~~p~~----------------------------~~~~~~~iN~~S~~~~~~a~~e~~~~~~~~~~~~QfeR~ 767 (798)
+|++||++++|++ .++|+++|||+|++++ .|++||++.++++|++|||||+
T Consensus 521 ~yd~Lf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~s~~~~-~~~~e~~~~~~~~~~~~QfeR~ 599 (851)
T 2hz7_A 521 LYDRLFRVPHPEGENADVEDDSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVL-RGYVEPSVAGDPADTRYQFERQ 599 (851)
T ss_dssp EECCSBSSSCTTCCC----------------------------CGGGGBCTTSEEEE-EEEECGGGGGSCTTCEEEETTT
T ss_pred ecccccCCCCcccccccccccccccccccccccccccccccCccHHHhcCCccceee-eeEEchhhhhCCCCCEEEEEEe
Confidence 9999999999975 3589999999999988 5899999999999999999999
Q ss_pred eeEEEec------CCCCCCeeEeeecCCCCCCCCC
Q 003751 768 GYFAVDK------DSTPEKLVFNRTVTLKDSFPKG 796 (798)
Q Consensus 768 Gyf~~D~------~s~~~~~v~n~~v~lk~~~~k~ 796 (798)
||||||+ ||+++++|||||||||++|+|.
T Consensus 600 Gyf~~D~~~~~~~~~~~~~~vfnr~v~lk~~~~~~ 634 (851)
T 2hz7_A 600 GYFWRDPVELERVDSREDALVFGRIITLKDTWGKQ 634 (851)
T ss_dssp EEEEECHHHHHCC------CEEEEEECSSCCC---
T ss_pred eEEEEccCCCccCCCCCCceEEEeecccccchhhc
Confidence 9999996 9999999999999999999983
No 3
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=8.3e-119 Score=1021.97 Aligned_cols=454 Identities=27% Similarity=0.439 Sum_probs=411.3
Q ss_pred hhcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCcccCCch
Q 003751 270 EVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSD 349 (798)
Q Consensus 270 ~~~~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~i~yqSd 349 (798)
..++|+|+|||||||||||||||||||++||++||+|||+|+||||||||+|+.++|+++|+++|+|||+.||+++|||+
T Consensus 91 ~~~~g~v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDtD~~R~~~e~~~~I~edL~wLGl~wd~~~~qSd 170 (553)
T 3aii_A 91 AGVKGEVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDETVIQSD 170 (553)
T ss_dssp SSCCSCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCTTHHHHHHHHHHHHTCCCSEEEEGGG
T ss_pred CCCCCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCCCCCCccccc
Confidence 34478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCCc
Q 003751 350 YFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNM 429 (798)
Q Consensus 350 ~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~ 429 (798)
||+.|+++|++||++|+||+|+||+++|++.|+.+++|+||+++++|++.+|++|++| .+|+++||+|+++.+++.++
T Consensus 171 r~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G--~~g~~~lR~k~d~~~~n~~~ 248 (553)
T 3aii_A 171 RMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEM--KEGSAVVRVKTDLNHPNPAI 248 (553)
T ss_dssp GHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGS--CTTSCEEEECCCTTCSSGGG
T ss_pred CHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcC--CcCceEEEEEcccccCCCCC
Confidence 9999999999999999999999999999999888899999999999999999999999 46789999999999899999
Q ss_pred CccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCCceeeeeeecCCCe
Q 003751 430 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNT 509 (798)
Q Consensus 430 ~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~w~f~~Ln~~g~ 509 (798)
+|||+||+...+||+||++|+||||||||||||||+|||||||||.||++||++|.||+++||++.|.||||++|+.+|+
T Consensus 249 ~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG~~~P~y~H~~~L~~~g~ 328 (553)
T 3aii_A 249 RDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKMDDV 328 (553)
T ss_dssp TTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHTCCCCEEECCCCBC----
T ss_pred CCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcCCCCCeEEEeeEEecCCc
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhhhccCCcceeEe
Q 003751 510 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVL 589 (798)
Q Consensus 510 KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~ 589 (798)
|||||+++++|++|+|+||||||++||++||++||+|+||++||+++||++++..++++.|++++|+.+++.+||.|+|+
T Consensus 329 KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~~~s~~~L~~~~r~~l~~~a~R~~~V~ 408 (553)
T 3aii_A 329 ALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRSILEEEARRYFFAA 408 (553)
T ss_dssp ---CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCBCCCHHHHHHHHHHHHTTTCEEECEEE
T ss_pred eechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCccccccHHHHHHHHHHHhhccChhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEeCCCCceeeeccccCCCCCCCCCCceeEeccccceeeecccccccCCccccCcCCCCEEEEeeeeeEEEEEe
Q 003751 590 NPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEV 669 (798)
Q Consensus 590 dp~kl~i~N~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~ 669 (798)
||+||+|+|+|.. +.+++|+||+ +|++|+|+|+|+++||||++||+ + +.|+|+++|||+|+++
T Consensus 409 ~p~kv~i~n~~~~--~~~~~p~hp~---~~~~G~r~v~~~~~i~ie~~D~~-----------~-~~vrL~~~~~i~~~~~ 471 (553)
T 3aii_A 409 DPVKLEVVGLPGP--VRVERPLHPD---HPEIGNRVLELRGEVYLPGDDLG-----------E-GPLRLIDAVNVIYSGG 471 (553)
T ss_dssp SEEEEEEETCCSC--EEEEEESCTT---CGGGCEEEEEESSEEEEECTTCC-----------S-EEEEETTTEEEEEETT
T ss_pred CcEEEEEeCCCCc--eEEEecCCCC---CCcCccEEEEECCEEEEEcccCC-----------c-CceeecCEEEEEEEEE
Confidence 9999999999842 5788999998 79999999999999999999996 4 7889999999999874
Q ss_pred eecCCCCCEEEEEEEEcCCC---CCCCC-eeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCceeec
Q 003751 670 ILSDDKETILHIRAEYDPSK---KTKPK-GVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIP 745 (798)
Q Consensus 670 ~~~~~~g~v~e~~~~~~~~~---~~K~k-~~I~WV~~~~~~~~~v~~evr~y~~Lf~~~~p~~~~~~~~~iN~~S~~~~~ 745 (798)
. |+|+++. .+|+| ++|||||+ .++++|+||. |++ . +.
T Consensus 472 ~------------~~~~~~~~~~~~k~k~~~i~Wv~~----~~~~~~~~~~---------~~~------------~-~~- 512 (553)
T 3aii_A 472 E------------LRYHSEGIEEARELGASMIHWVPA----ESALEAEVIM---------PDA------------S-RV- 512 (553)
T ss_dssp E------------EEEEECSHHHHHHHTCEEECCEEG----GGCEEEEEEC---------TTS------------C-EE-
T ss_pred E------------EEEeCCchhhcccCCCCEEEEccC----CCceEEEEEC---------CCC------------c-EE-
Confidence 3 6776643 25677 89999997 4578999884 321 1 33
Q ss_pred ceeeccccccCCCCCeEEEEEeeeEEEecCCCCCCeeE
Q 003751 746 EAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVF 783 (798)
Q Consensus 746 ~a~~e~~~~~~~~~~~~QfeR~Gyf~~D~~s~~~~~v~ 783 (798)
.|++||++.++++|++|||||.||||||+++.+ +||
T Consensus 513 ~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~--~~~ 548 (553)
T 3aii_A 513 RGVIEADASELEVDDVVQLERFGFARLDSAGPG--MVF 548 (553)
T ss_dssp EEEECGGGGGCCTTCEEEETTTEEEEEEECSSS--EEE
T ss_pred EEEEchhHhcCCCCCEEEEEEeEEEEEeeCCCc--EEE
Confidence 689999999999999999999999999987544 554
No 4
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=100.00 E-value=2e-75 Score=668.30 Aligned_cols=312 Identities=21% Similarity=0.249 Sum_probs=272.4
Q ss_pred HHHHHHhhhhcC--CeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCC
Q 003751 262 KEVLDKHLEVTG--GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGW 339 (798)
Q Consensus 262 ~~~~~~hl~~~~--g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl 339 (798)
|-.|+.|.+..+ ..||||||||||||||||||||||+||++||++||+|+|||||||++|+.++|+++|+++|+||||
T Consensus 9 ~g~~~~~~~~p~~~~~vrtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl 88 (512)
T 4gri_A 9 MGTLEAQTQGPGSMLSTRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLKWLGI 88 (512)
T ss_dssp ---------------CCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCHHHHHHHHHHHHHHTC
T ss_pred ccchhhcccCCCCCCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCCHHHHHHHHHHHHHcCC
Confidence 444555555443 369999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCc---------ccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhc--------cCCCCCCCCCChHHHHHHHH
Q 003751 340 EPFK---------ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFE 402 (798)
Q Consensus 340 ~pd~---------i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~--------~~y~~~~R~~s~ee~l~~f~ 402 (798)
+||+ +||||+|++.|+++|++|+++|+||+|+||++|+++.|+ ++|++.||+++.++..
T Consensus 89 ~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~---- 164 (512)
T 4gri_A 89 SFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVE---- 164 (512)
T ss_dssp CCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHH----
T ss_pred CCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhh----
Confidence 9996 469999999999999999999999999999999988765 4688999999886532
Q ss_pred HhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCc----ccccccccccceeeccCCCcceEecCcccc
Q 003751 403 DMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDK----WCIYPSYDYAHCIVDSIENITHSLCTLEFE 478 (798)
Q Consensus 403 ~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~----~~g~PTY~fa~~VDD~l~gITHviRG~E~~ 478 (798)
.+....+++++|+|+++ .++..|+|.|.|++.+..+...||. ++|+||||||||||||+|||||||||.||+
T Consensus 165 ---~~~~~~~~~~~R~k~~~-~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l 240 (512)
T 4gri_A 165 ---NALIKKIKPVVRFKIPL-EGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWV 240 (512)
T ss_dssp ---HHHHTTCCCEEEECCCS-SCEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGG
T ss_pred ---hhhhhhccceeeecccc-cCCceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccc
Confidence 23334557999999986 4578899999999998877777764 478999999999999999999999999999
Q ss_pred cchhhHHHHHHHhCCCCCceeeeee-ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcC
Q 003751 479 TRRASYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIG 557 (798)
Q Consensus 479 ~~t~~q~~L~~aLg~~~P~~w~f~~-Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG 557 (798)
+|||+|.|||++|||+.|.|.|++. ++.+|+|||||+++ .+|..+|+.||.|+||.||++.||
T Consensus 241 ~sTp~q~~l~~alg~~~P~y~H~pli~~~~g~kLSKR~~~----------------~~v~~~~~~G~lPeAl~NyLalLG 304 (512)
T 4gri_A 241 SSGPLHVLLYKAFKWKPPIYCHLPMVMGNDGQKLSKRHGS----------------TALRQFIEDGYLPEAIINYVTLLG 304 (512)
T ss_dssp GGHHHHHHHHHHHTCCCCEEEEECCCBCTTSSBCCTTTSC----------------CBHHHHHHHTCCHHHHHHHHHHSS
T ss_pred cccHHHHHHHHHcCCCCCeEEecchhccccccccCccccc----------------ccHHHHHHcCCChHHHHHHHHHhC
Confidence 9999999999999999998777775 68899999999987 579999999999999999999999
Q ss_pred CCCCCccccHhhHHHHHHHhhhccCCcceeEecceeEEEEe
Q 003751 558 ISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN 598 (798)
Q Consensus 558 ~s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~dp~kl~i~N 598 (798)
||..+. -++..++++++.|....+++++++||+.||.|.|
T Consensus 305 ws~~~~-~Eifs~~eli~~Fdl~~v~ks~a~fD~~KL~~~N 344 (512)
T 4gri_A 305 WSYDDK-REFFSKNDLEQFFSIEKINKSPAIFDYHKLDFFN 344 (512)
T ss_dssp BCSSSS-CCCCCHHHHHHHCCGGGBCSSCCBCCHHHHHHHH
T ss_pred CCCccc-chhhhHHHHHHHHHhcCCCCCCccccHHHHHHHH
Confidence 998753 3567789999999999999999999999998877
No 5
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=100.00 E-value=4.3e-73 Score=644.07 Aligned_cols=311 Identities=20% Similarity=0.265 Sum_probs=277.0
Q ss_pred cCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCc--------
Q 003751 272 TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-------- 343 (798)
Q Consensus 272 ~~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~-------- 343 (798)
++++|||||||||||+|||||+||||+||++||++||+|+|||||||++|+.++++++|+++|+||||+||+
T Consensus 3 ~~~~vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~ 82 (498)
T 2ja2_A 3 ATETVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGGPY 82 (498)
T ss_dssp SCCCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTT
T ss_pred CCCCeeEEECcCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCcccChHHHHHHHHHHHHcCCCcCCCcCcCCCC
Confidence 456799999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -ccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhc-------cCCCCCCCCCChHHHHHHHHHhhcCcccCC-ce
Q 003751 344 -ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE-------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KA 414 (798)
Q Consensus 344 -i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~-------~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g-~~ 414 (798)
++|||+|++.|+++|++|+++|+||+|+||+++|.+.|. ++|+++||+++.+|+...+ .+| .+
T Consensus 83 ~~~~QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~--------~~g~~~ 154 (498)
T 2ja2_A 83 GPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYL--------AEGRQP 154 (498)
T ss_dssp CCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHH--------HTTCCC
T ss_pred CCeeeecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhh--------ccCCCc
Confidence 899999999999999999999999999999999988761 5799999999999876532 234 57
Q ss_pred EEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-----cccccccccceeeccCCCcceEecCcccccchhhHHHHHH
Q 003751 415 TLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLH 489 (798)
Q Consensus 415 ~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~-----~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~ 489 (798)
+||+|++ .++..|.|.|.|++.+..+.. ++| +|+||||||||||||+|||||||||.||+++|++|.+|++
T Consensus 155 ~iR~k~~--~~~~~~~D~v~G~i~~~~~~~--~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~ 230 (498)
T 2ja2_A 155 VVRLRMP--DDDLAWNDLVRGPVTFAAGSV--PDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQ 230 (498)
T ss_dssp EEEECCC--SSCEEEEETTTEEEEECTTCS--CCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHH
T ss_pred eEEEECC--CCceEEEecccceEeeccccc--CcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHH
Confidence 9999987 567889999999998877654 456 4899999999999999999999999999999999999999
Q ss_pred Hh-----CCCCCceeeeee-ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCc
Q 003751 490 AL-----GLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS 563 (798)
Q Consensus 490 aL-----g~~~P~~w~f~~-Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~ 563 (798)
+| |++.|.|.|++. +|.+|+|||||+++ .+|.+||++||+|+||++||+.+||+..+.
T Consensus 231 aL~~~g~g~~~P~~~h~plil~~~g~KLSKR~g~----------------~~l~~~r~~G~~peAl~~~l~~lG~s~~~~ 294 (498)
T 2ja2_A 231 ALIRIGVAERIPKFAHLPTVLGEGTKKLSKRDPQ----------------SNLFAHRDRGFIPEGLLNYLALLGWSIADD 294 (498)
T ss_dssp HHHHTTSCCCCCEEEEECCEECSSSSBCCTTSGG----------------GBHHHHHHHTCCHHHHHHHHHTSSCCSCSS
T ss_pred HHHhhcCCCCCCeEEEeeeeECCCCCcccccCCc----------------ccHHHHHhCCCCHHHHHHHHHHhCCCCCcc
Confidence 99 999996666655 68999999999987 479999999999999999999999997653
Q ss_pred cccHhhHHHHHHHhhhccCCcceeEecceeEEEEe------CCCCceeeecccc
Q 003751 564 LIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKR 611 (798)
Q Consensus 564 ~~~~~~Le~~ir~~~~~~~~R~~av~dp~kl~i~N------~~~~~~~~~~~p~ 611 (798)
.++..++++++.|....+++.+++||+.||.|.| ++.+.+.....|+
T Consensus 295 -~e~~s~~eli~~f~~~~~~~~~a~fd~~kL~~~N~~~i~~~~~~~l~~~l~~~ 347 (498)
T 2ja2_A 295 -HDLFGLDEMVAAFDVADVNSSPARFDQKKADALNAEHIRMLDVGDFTVRLRDH 347 (498)
T ss_dssp -CCCCCHHHHHHHCCGGGCCCSCEECCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred -cccCCHHHHHhhCChhhcCccccccCHHHHHHhhHHHHHhcCHHHHHHHHHHH
Confidence 2456678999999999999999999999999887 5555444444443
No 6
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=100.00 E-value=8.2e-73 Score=642.36 Aligned_cols=294 Identities=23% Similarity=0.305 Sum_probs=264.2
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCc-ccCCchhHHH
Q 003751 275 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQE 353 (798)
Q Consensus 275 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~-i~yqSd~~~~ 353 (798)
+|||||||||||+|||||+||||+||++||++||+|+|||||||++|+.++|+++|+++|+|||+.||+ ++|||+|++.
T Consensus 1 ~v~~RFAPSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dL~wLGl~wde~~~~QS~r~~~ 80 (492)
T 2cfo_A 1 TVRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDEGPYFQSDRLDL 80 (492)
T ss_dssp CCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSSSSCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHH
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCCccccchHHHHHHHHHHHHcCCCCCCCCccccCCHHH
Confidence 389999999999999999999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred HHHHHHHHHHcCCccccCCCHHHHHHHhc--------cCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCC--
Q 003751 354 LYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ-- 423 (798)
Q Consensus 354 ~ye~a~~LI~~G~AY~C~cs~eel~~~r~--------~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~-- 423 (798)
|++++++|+++|+||+|+||+++|.+.|+ ++|+++||+++.+|++ +.|..|. ++++|+|++..
T Consensus 81 y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~---~~~~~g~----~~~iR~k~~~~~~ 153 (492)
T 2cfo_A 81 YRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQA---AFEAAGR----TPVIRFKIEDDRQ 153 (492)
T ss_dssp HHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHH---HHHHTTC----CCEEEECCCTTCE
T ss_pred HHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHH---HHHhCCC----CceEEEEcCCCCc
Confidence 99999999999999999999999988763 3799999999998865 3455554 58999998732
Q ss_pred ------------CCCCCc-CccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHH
Q 003751 424 ------------NDNFNM-YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHA 490 (798)
Q Consensus 424 ------------~~~~~~-~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~a 490 (798)
.++..+ .|+|+||... + +|.|+||||||||||||+|||||||||.||++||++|.||+++
T Consensus 154 ~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~--~-----p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~a 226 (492)
T 2cfo_A 154 IEWQDLVRGRVSWQGADLGGDMVIARAAP--R-----GEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEA 226 (492)
T ss_dssp EEEEETTTEEEEEEGGGGCSSEEEECSCC--T-----TSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHH
T ss_pred eEEEecceeeeeecccccCCCeEEEEecC--C-----CCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHH
Confidence 245567 8999998732 1 2568999999999999999999999999999999999999999
Q ss_pred hCCCCCceeeeee-ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhh
Q 003751 491 LGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDR 569 (798)
Q Consensus 491 Lg~~~P~~w~f~~-Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~ 569 (798)
||++.|.|.|.++ +|.+|+|||||+++ .+|.+||++||+|+||+|||+.+||+.+....++..
T Consensus 227 lg~~~P~~~H~plil~~~g~KLSKr~g~----------------~~l~~~r~~G~~peal~~~l~~lG~s~~~~~~e~~~ 290 (492)
T 2cfo_A 227 LGATPPNFAHTPLILNSTGQKLSKRDGV----------------TSISDFRAMGYLAPALANYMTLLGWSPPEGVGELFT 290 (492)
T ss_dssp TTCCCCEEEEECCEECSSSSBCCTTSSC----------------CBHHHHHHTTCCHHHHHHHHHHTTBCCCTTTCSCCC
T ss_pred cCCCCceEEEeeeEECCCCCEecccCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCCCccccccC
Confidence 9999997777776 79999999999997 479999999999999999999999997222235567
Q ss_pred HHHHHHHhhhccCCcceeEecceeEEEEe
Q 003751 570 LEYHIREELNKTAPRTMVVLNPLKVVITN 598 (798)
Q Consensus 570 Le~~ir~~~~~~~~R~~av~dp~kl~i~N 598 (798)
++++++.|....+++.+++|||.||.|.|
T Consensus 291 ~~e~i~~f~~~~i~~~~~~~d~~kl~~~N 319 (492)
T 2cfo_A 291 LDLAAKHFSFERINKAGARFDWDKLNWLN 319 (492)
T ss_dssp HHHHHHHCCSTTBCSSCEECCHHHHHHHH
T ss_pred HHHHHhhcChhhcCccccccCHHHHHHHH
Confidence 89999999999999999999999999887
No 7
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=100.00 E-value=6.4e-73 Score=639.81 Aligned_cols=297 Identities=23% Similarity=0.306 Sum_probs=260.2
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCcc---------c
Q 003751 275 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKI---------T 345 (798)
Q Consensus 275 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~i---------~ 345 (798)
+|||||||||||+|||||+||||+||++||++||+|+|||||||++|+.++|+++|+++|+|||++||+. +
T Consensus 1 ~v~~RFaPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~ 80 (468)
T 1j09_A 1 MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPY 80 (468)
T ss_dssp CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCC
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCcccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCe
Confidence 3899999999999999999999999999999999999999999999999999999999999999999974 8
Q ss_pred CCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhc--cCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCC
Q 003751 346 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ 423 (798)
Q Consensus 346 yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~--~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~ 423 (798)
|||+|++.|+++|++|+++|+||+|+||++++.+.|+ .+|+++||+++.+|++. .|.+|. +++||+|++.
T Consensus 81 ~QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~---~~~~g~----~~~~R~k~~~- 152 (468)
T 1j09_A 81 RQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEE---RARRGE----PHVIRLKVPR- 152 (468)
T ss_dssp BGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHH---HHHTTC----CCEEEECCCS-
T ss_pred eccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHH---HHhcCC----CceEEEecCC-
Confidence 9999999999999999999999999999999998875 37999999999998764 354543 5899999873
Q ss_pred CCCCCcCccEEEEEecCCCCCCCCcc-----cccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCCce
Q 003751 424 NDNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYV 498 (798)
Q Consensus 424 ~~~~~~~D~V~~Ri~~~~h~~~gd~~-----~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~ 498 (798)
.+...+.|.|.+++.++... .+ +| +|+||||||||||||+|||||||||.||++++++|.||+++||++.|.|
T Consensus 153 ~~~~~~~D~~~G~~~~~~~~-~~-D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p~~ 230 (468)
T 1j09_A 153 PGTTEVKDELRGVVVYDNQE-IP-DVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRF 230 (468)
T ss_dssp SCEEEEEETTTEEEEEEGGG-SC-CCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEE
T ss_pred CCceEEEeccceeEeecccC-CC-CeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCCeE
Confidence 23445555555555433322 12 22 4799999999999999999999999999999999999999999999966
Q ss_pred eeeee-ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHh
Q 003751 499 WEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREE 577 (798)
Q Consensus 499 w~f~~-Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~ 577 (798)
.|++. +|.+|+|||||+++ .+|++||++||+|+||+|||+.+||+.++. .++..++++++.|
T Consensus 231 ~h~~li~~~~g~klSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~~~~~~-~~~~~~~el~~~f 293 (468)
T 1j09_A 231 YHMPLLRNPDKTKISKRKSH----------------TSLDWYKAEGFLPEALRNYLCLMGFSMPDG-REIFTLEEFIQAF 293 (468)
T ss_dssp EEECCCBCTTSCBCCTTTSC----------------CBHHHHHHTTCCHHHHHHHHHHHSCCCTTC-CSCCCHHHHHHHC
T ss_pred EEeeeeeCCCCCccccccch----------------hhHHHHHHCCCCHHHHHHHHHHhccCCccc-ccCCCHHHHHhhC
Confidence 65555 59999999999997 479999999999999999999999997653 2345678999999
Q ss_pred hhccCCcceeEecceeEEEEe
Q 003751 578 LNKTAPRTMVVLNPLKVVITN 598 (798)
Q Consensus 578 ~~~~~~R~~av~dp~kl~i~N 598 (798)
....+++.+++|||.||.|.|
T Consensus 294 ~~~~~~~~~~~~d~~kl~~~N 314 (468)
T 1j09_A 294 TWERVSLGGPVFDLEKLRWMN 314 (468)
T ss_dssp CGGGCCCSCCBCCHHHHHHHH
T ss_pred ChhhcCccccccChHHhhhhc
Confidence 999999999999999999888
No 8
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=100.00 E-value=1.1e-71 Score=629.99 Aligned_cols=310 Identities=22% Similarity=0.314 Sum_probs=253.0
Q ss_pred CeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCc-ccCCchhHH
Q 003751 274 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQ 352 (798)
Q Consensus 274 g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~-i~yqSd~~~ 352 (798)
++|||||||||||+|||||+|+||+||++||++||+|+|||||||++|+.++|++.|+++|+|||+.||+ +++||+|++
T Consensus 24 ~~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dl~wlGl~~d~~~~~qS~r~~ 103 (490)
T 4g6z_A 24 RPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMAWLGLDYDEGPYYQMQRMD 103 (490)
T ss_dssp CCCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCHH
T ss_pred CCceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCCCcccccHHHHHHHHHHHHHcCCCCCCCCcccccCHH
Confidence 5699999999999999999999999999999999999999999999999999999999999999999997 699999999
Q ss_pred HHHHHHHHHHHcCCccccCCCHHHHHHHhc--------cCCCCCCCCCChHHHHHHHHHhhcCcccCC-ceEEEEEecCC
Q 003751 353 ELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQDMQ 423 (798)
Q Consensus 353 ~~ye~a~~LI~~G~AY~C~cs~eel~~~r~--------~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g-~~~lR~K~d~~ 423 (798)
.|++++++|+++|+||+|+||+++|++.|+ ++|+++||+++.++. . ...+| ++++|||++.
T Consensus 104 ~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~--------~-~~~~g~~~~~R~k~~~- 173 (490)
T 4g6z_A 104 RYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVL--------P-EPPAGVAPVLRFRNPL- 173 (490)
T ss_dssp HHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCC--------C-CCCTTCCCEEEECCCC-
T ss_pred HHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhh--------h-hhhcCCCceEEEecCC-
Confidence 999999999999999999999999988764 469999999985421 1 12334 6899999752
Q ss_pred CCCCCcCccEEEEEecCCCCCCCCc----ccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCCcee
Q 003751 424 NDNFNMYDLIAYRIKFTPHPHAGDK----WCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVW 499 (798)
Q Consensus 424 ~~~~~~~D~V~~Ri~~~~h~~~gd~----~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~w 499 (798)
.+...+.|.|.+.+.+.... .+|. -+|+||||||||||||+|||||||||.||++|||+|.||+++|||+.|.|.
T Consensus 174 ~~~~~~~D~i~G~~~~~~~~-~~D~Vl~R~DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~aLG~~~P~f~ 252 (490)
T 4g6z_A 174 TGTVAWDDAVKGRVEISNEE-LDDLVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALGGEVPVYA 252 (490)
T ss_dssp SSEEEEEETTTEEEEEEGGG-CCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHTTCCCCEEE
T ss_pred CCcEEEEEeeeeeeeecccc-CCCeEEEeeCCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHHHcCCCCCeEE
Confidence 22334444444444332211 1111 146999999999999999999999999999999999999999999999666
Q ss_pred eeee-ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhh
Q 003751 500 EYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 578 (798)
Q Consensus 500 ~f~~-Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~ 578 (798)
|.+. +|.+|+|||||+++ .||.+||++||+|+||+|||+.+||+.++. ++..++++++.|.
T Consensus 253 HlpLi~~~~g~KLSKR~g~----------------~sl~~~r~~G~~peal~n~l~~lG~s~~~~--e~~s~~eli~~F~ 314 (490)
T 4g6z_A 253 HLPTVLNEQGEKMSKRHGA----------------MSVMGYRDAGYLPEAVLNYLARLGWSHGDA--EIFTREQFVEWFD 314 (490)
T ss_dssp EECCEECTTSSBCCTTTTC----------------CBHHHHHHTTCCHHHHHHHHHTSSBCCTTC--CCCCHHHHHHHCC
T ss_pred EecceeCCCCCcccCCCCC----------------cCHHHHHHCCCCHHHHHHHHHHhCCCCCCc--cccCHHHHHhhCC
Confidence 6554 58899999999986 589999999999999999999999997653 5567899999999
Q ss_pred hccCCcceeEecceeEEEEe------CCCCceeeeccccC
Q 003751 579 NKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKRW 612 (798)
Q Consensus 579 ~~~~~R~~av~dp~kl~i~N------~~~~~~~~~~~p~~ 612 (798)
..++++.+++||+.||.|.| ++.+.+.....|++
T Consensus 315 ~~~~~~~~~~fd~~KL~~~N~~~i~~~~~~~l~~~~~~~l 354 (490)
T 4g6z_A 315 LEHLGKSPAQYDHNKLNWLNNHYIKEADDARLAGLAKPFF 354 (490)
T ss_dssp GGGBCSSCEECCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HhhCCCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999887 55554444444443
No 9
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=100.00 E-value=8.2e-70 Score=616.82 Aligned_cols=302 Identities=21% Similarity=0.303 Sum_probs=260.2
Q ss_pred hcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCc-------
Q 003751 271 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK------- 343 (798)
Q Consensus 271 ~~~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~------- 343 (798)
.+.++|||||||||||+|||||+|+||+||++||++||+|+|||||||++|+.++++++|+++|+|||++||+
T Consensus 21 ~~~~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG~ 100 (488)
T 3afh_A 21 RCFELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGD 100 (488)
T ss_dssp ----CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHTTCCCSBBTTTBCT
T ss_pred hcCCCceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeCCcccccHHHHHHHHHHHHHcCCCCCcCCCCCCC
Confidence 3446799999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred --ccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEec
Q 003751 344 --ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQD 421 (798)
Q Consensus 344 --i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d 421 (798)
++|||+|++.|++++++|+++|+||+|+||+++|++...++|++. . +.+..|. ++++|+|++
T Consensus 101 ~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~------~------~~~~~G~----~~~iR~k~~ 164 (488)
T 3afh_A 101 FGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYP------H------EYKEKGH----PVTIKFKVL 164 (488)
T ss_dssp TCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCC------H------HHHHTTC----CEEEEECCC
T ss_pred CCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCch------h------hHHhcCC----CceEEEECC
Confidence 489999999999999999999999999999999987544566654 1 1233332 689999987
Q ss_pred CCCCCCCcCccEEEEEecCCCCCCCCcc-----cccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCC
Q 003751 422 MQNDNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQP 496 (798)
Q Consensus 422 ~~~~~~~~~D~V~~Ri~~~~h~~~gd~~-----~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P 496 (798)
.++..+.|.|.|++.+..+.. ++| +|+||||||||||||+|||||||||.||++||++|.||+++||++.|
T Consensus 165 --~~~~~~~D~v~G~~~~~~~~~--~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG~~~P 240 (488)
T 3afh_A 165 --PGKTSFEDLLKGYMEFDNSTL--EDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAP 240 (488)
T ss_dssp --SSEEEEEETTTEEEEEEGGGS--CCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCC
T ss_pred --CCceeEEeccceeEeecCCCC--CCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcCCCCC
Confidence 456778888888887655432 345 48999999999999999999999999999999999999999999999
Q ss_pred ceeeeee-ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHH
Q 003751 497 YVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 575 (798)
Q Consensus 497 ~~w~f~~-Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir 575 (798)
.|.|++. +|.+|+|||||+++ .+|.+||++||+|+||+|||+.+||+..+. ++..++++++
T Consensus 241 ~f~H~pli~~~~g~KLSKR~g~----------------~~l~~~r~~G~~peal~n~l~~lG~s~~~~--e~~s~~e~i~ 302 (488)
T 3afh_A 241 VFMHIPLILGSDRTPLSKRHGA----------------TSVEHFRREGILSRALMNYLALLGWRVEGD--EIFTIEEKLQ 302 (488)
T ss_dssp EEEEECCEECTTSSBCCTTTSC----------------CBHHHHHHHTCCHHHHHHHHHHTTCCCSSC--SCCCHHHHGG
T ss_pred eEEEEeeeeCCCCCcccCcCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCccc--ccCCHHHHHh
Confidence 6666665 49999999999997 479999999999999999999999997654 5567899999
Q ss_pred HhhhccCCcceeEecceeEEEEe------CCCCceeeeccc
Q 003751 576 EELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAK 610 (798)
Q Consensus 576 ~~~~~~~~R~~av~dp~kl~i~N------~~~~~~~~~~~p 610 (798)
.|....++|.+++|||.||.|.| +|.+.+.....|
T Consensus 303 ~f~~~~i~~~~~~fd~~kl~~~N~~~i~~~~~~~l~~~l~~ 343 (488)
T 3afh_A 303 SFDPKDISNKGVIFDYQKLEWVNGKHMRRIDLEDLKREFIE 343 (488)
T ss_dssp GCCGGGSCSSCEECCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hCChhhcCccccccChHHhhhccHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999998877 555444333333
No 10
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-66 Score=602.31 Aligned_cols=299 Identities=21% Similarity=0.315 Sum_probs=257.9
Q ss_pred CeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCc---------c
Q 003751 274 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---------I 344 (798)
Q Consensus 274 g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~---------i 344 (798)
++|+|||||||||+|||||+|+|++||++||+|||+|+|||||||++|+.++++++|+++|+|||++||+ +
T Consensus 128 ~~v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~I~~dL~wlGl~~D~~~~~gG~~gp 207 (592)
T 3al0_C 128 ELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGP 207 (592)
T ss_dssp CCCEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCSSSCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCcChhhccHHHHHHHHHHHHHcCCCCCCCCCcCCCCCC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999997 4
Q ss_pred cCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCC
Q 003751 345 TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQN 424 (798)
Q Consensus 345 ~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~ 424 (798)
+|||+|++.|++++++|+++|+||+|+||+++|++.+.++|++. . +.+..|. ++++|+|++ .
T Consensus 208 ~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~------~------~~~~~g~----~~~iR~k~~--~ 269 (592)
T 3al0_C 208 YRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYP------H------EYKEKGH----PVTIKFKVL--P 269 (592)
T ss_dssp CBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCC------H------HHHHTTC----CEEEEECCC--S
T ss_pred eeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcH------H------HHhhcCC----CceEEEECC--C
Confidence 89999999999999999999999999999999976533455543 1 2233443 689999987 4
Q ss_pred CCCCcCccEEEEEecCCCCCCCCcc-----cccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCCCcee
Q 003751 425 DNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVW 499 (798)
Q Consensus 425 ~~~~~~D~V~~Ri~~~~h~~~gd~~-----~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~w 499 (798)
++..|.|.|.|++.+..+.. ++| +|+||||||||||||+|||||||||.||++||++|.||+++||++.|.|.
T Consensus 270 ~~~~~~D~v~G~~~~~~~~~--~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~P~~~ 347 (592)
T 3al0_C 270 GKTSFEDLLKGYMEFDNSTL--EDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFM 347 (592)
T ss_dssp SCCEECCTTTCSEECCSSSS--CCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCCBCC
T ss_pred CCceeeecccceeeeccccC--CCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhCCCCCeEE
Confidence 56778888888876654332 344 57999999999999999999999999999999999999999999999666
Q ss_pred eeee-ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhh
Q 003751 500 EYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 578 (798)
Q Consensus 500 ~f~~-Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~ 578 (798)
|++. +|.+|+|||||+++ .+|++||++||+|+||+|||+.+||+.... ++..++++++.|.
T Consensus 348 hlpli~~~~g~KLSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~s~~~~--e~~s~~e~i~~f~ 409 (592)
T 3al0_C 348 HIPLILGSDRTPLSKRHGA----------------TSVEHFRREGILSRALMNYLALLGWRVEGD--EIFTIEEKLQSFD 409 (592)
T ss_dssp EECCCBCTTSSBCCTTTCS----------------SBHHHHHHTTCCHHHHHHHHTTTTBCCCSC--SCCCTTTTGGGCC
T ss_pred EeeeeeCCCCCcccccCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCccc--ccCCHHHHHhhCC
Confidence 6555 49999999999997 479999999999999999999999997654 4566788999999
Q ss_pred hccCCcceeEecceeEEEEe------CCCCceeeeccc
Q 003751 579 NKTAPRTMVVLNPLKVVITN------MESGTIMHLDAK 610 (798)
Q Consensus 579 ~~~~~R~~av~dp~kl~i~N------~~~~~~~~~~~p 610 (798)
...++|.+++|||.||.|.| ++.+.+.....|
T Consensus 410 ~~~i~~~~~~fd~~kl~~~N~~~i~~~~~~~l~~~~~~ 447 (592)
T 3al0_C 410 PKDISNKGVIFDYQKLEWVNGKHMRRIDLEDLKREFIE 447 (592)
T ss_dssp TTSBCSSCCBCCHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred hhhcCcccceeCHHHHhhhhHHHhhcCCHHHHHHHHHH
Confidence 99999999999999998887 455444444444
No 11
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-65 Score=579.90 Aligned_cols=309 Identities=23% Similarity=0.322 Sum_probs=263.6
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCc---------cc
Q 003751 275 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---------IT 345 (798)
Q Consensus 275 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~---------i~ 345 (798)
-||+||||||||+|||||+|+|++||++||.+||+|+|||||||++|+.++++++|+++|+|||++||+ ++
T Consensus 13 vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD~~r~~~~~~~~I~~~l~wlGl~~de~p~~gg~~g~y 92 (481)
T 2o5r_A 13 MVRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVGGDHGPY 92 (481)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSSCCSGGGHHHHHHHHHHHHHTCCCSBBTTTBCTTCCC
T ss_pred EEEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCccccHHHHHHHHHHHHHHcCCCCCCCcccCCCCCce
Confidence 489999999999999999999999999999999999999999999999999999999999999999996 58
Q ss_pred CCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhc--------cCCCCC--CCCCChHHHHHHHHHhhcCcccCCceE
Q 003751 346 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSP--WRDRPIAESLKLFEDMRNGRIEEGKAT 415 (798)
Q Consensus 346 yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~--------~~y~~~--~R~~s~ee~l~~f~~m~~G~~~~g~~~ 415 (798)
|||+|++.|+++|++|+++|+||+|+||++++...|+ +.|++. ||+++.+|+.. .|..|. +++
T Consensus 93 ~QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~---~~~~G~----~~~ 165 (481)
T 2o5r_A 93 RQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRRE---YEEKGL----RPA 165 (481)
T ss_dssp BGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHH---HHHTTC----CCE
T ss_pred eeeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHH---HHhcCC----cce
Confidence 9999999999999999999999999999999988763 368988 99999988653 355554 589
Q ss_pred EEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-----cccccccccceeeccCCCcceEecCcccccchhhHHHHHHH
Q 003751 416 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHA 490 (798)
Q Consensus 416 lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~-----~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~a 490 (798)
||+|++. +...+.|.+.+++.+.... .| +| +|+||||||||||||+|||||||||.||+.++++|.||+++
T Consensus 166 iR~k~~~--~~~~~~D~~~G~~~~~~~~-~~-D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~a 241 (481)
T 2o5r_A 166 VFFKMPR--KDYVLNDVVKGEVVFKTGA-IG-DFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEA 241 (481)
T ss_dssp EEECCCS--SCEEEEETTTEEEEECTTS-SC-BEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHH
T ss_pred EEEEcCC--CceEEEecccceeEecccc-CC-CeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHHH
Confidence 9999863 3344555555555443322 12 22 47999999999999999999999999999999999999999
Q ss_pred hCCCCCceeeeee-ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhh
Q 003751 491 LGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDR 569 (798)
Q Consensus 491 Lg~~~P~~w~f~~-Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~ 569 (798)
||++.|.+.|++. ++.+|+|||||+++ .+|.+|+++||+|+||++|+..+||+.+.. -++..
T Consensus 242 LG~~~p~~~H~plil~~~G~KLSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~s~~~~-~e~~~ 304 (481)
T 2o5r_A 242 FEKAPPVFAHVSTILGPDGKKLSKRHGA----------------TSVEAFRDMGYLPEALVNYLALLGWSHPEG-KELLT 304 (481)
T ss_dssp TTCCCCEEEEECCEECTTSSBCCGGGSC----------------CBHHHHHHHTCCHHHHHHHHHTSSBCCTTC-CCCCC
T ss_pred cCCCCCeEEEEeeEECCCCCcccCcCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCCcc-cccCC
Confidence 9999997767665 68999999999997 479999999999999999999999997432 13456
Q ss_pred HHHHHHHhhhccCCcceeEecceeEEEEe------CCCCceeeecccc
Q 003751 570 LEYHIREELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKR 611 (798)
Q Consensus 570 Le~~ir~~~~~~~~R~~av~dp~kl~i~N------~~~~~~~~~~~p~ 611 (798)
++++++.|....+++.+++||+.|+.+.| +|.+.+.....|+
T Consensus 305 ~~e~i~~f~l~~~~~~~~~fd~~kl~~~n~~~i~~~~~~~l~~~~~~~ 352 (481)
T 2o5r_A 305 LEELISSFSLDRLSPNPAIFDPQKLKWMNGYYLRNMPIEKLAELAKPF 352 (481)
T ss_dssp HHHHHHHCCGGGBCSSCEECCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHhCChhhCCccCcccChHHhhhhCHHHHHhcCHHHHHHHHHHH
Confidence 68899999999999999999999998776 5555443334443
No 12
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=100.00 E-value=2.9e-63 Score=532.62 Aligned_cols=266 Identities=19% Similarity=0.202 Sum_probs=217.1
Q ss_pred CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCc-ccCCchhH
Q 003751 273 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYF 351 (798)
Q Consensus 273 ~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTDp~Re~~e~~~~I~edL~wLGl~pd~-i~yqSd~~ 351 (798)
.+.|+|||||||||+|||||+|+||+||++||+++|+|+|||||||++|+.+++++.|+++|+|||++||+ +++||+|+
T Consensus 3 ~~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDtD~~R~~~~~~~~I~~dL~~LGl~~D~~~~~qSer~ 82 (298)
T 1nzj_A 3 DTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRH 82 (298)
T ss_dssp -CCCEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCCCSSCCEEGGGCH
T ss_pred CCCeEEEECcCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecCCchhhHHHHHHHHHHHHHHcCCCCCCCCeeeeCCH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999997 89999999
Q ss_pred HHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCC----
Q 003751 352 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNF---- 427 (798)
Q Consensus 352 ~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~---- 427 (798)
+.|++++++|+++|+||+|+||+++|++.. ..|++.||+++.+ | ...++|+|++. ...
T Consensus 83 ~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~-~~Y~g~cr~~~~~-----------g----~~~~~R~r~~~--~~~~f~D 144 (298)
T 1nzj_A 83 DAYREALAWLHEQGLSYYCTCTRARIQSIG-GIYDGHCRVLHHG-----------P----DNAAVRIRQQH--PVTQFTD 144 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCHHHHHHTT-SSCCCTTTTTCCC-----------S----TTCEEEECCSS--CCCEEEE
T ss_pred HHHHHHHHHHHHcCCcccCcCCHHHHHHcC-CCCCCccccCCcC-----------C----CCCcEEEecCC--cccceeh
Confidence 999999999999999999999999998764 3799999987653 1 24689998762 223
Q ss_pred ------------CcCccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhCCCC
Q 003751 428 ------------NMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQ 495 (798)
Q Consensus 428 ------------~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg~~~ 495 (798)
.+.|+|++|. +|+|||||||+|||++|||||||||.||++++++|.+|+++||++.
T Consensus 145 ~~~G~~~~~~~~~~~D~VL~R~------------dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~ 212 (298)
T 1nzj_A 145 QLRGIIHADEKLAREDFIIHRR------------DGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKV 212 (298)
T ss_dssp TTTEEEECCHHHHHSCCEEECT------------TSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCC
T ss_pred hhCcccccCcccCCCCEEEECC------------CCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCC
Confidence 3455555553 4699999999999999999999999999999999999999999999
Q ss_pred Cceeeeeee-cCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCc--cccHh-hHH
Q 003751 496 PYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS--LIRLD-RLE 571 (798)
Q Consensus 496 P~~w~f~~L-n~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~--~~~~~-~Le 571 (798)
|.|+|++++ |.+|+|||||+++..|++ .+|+ .++.+|+..+||+.... .++.+ .|+
T Consensus 213 p~~~H~pll~~~~g~KLSKR~g~~~v~~------~~~~--------------~~~~~~l~~lG~~~~~~~~~~~~~~~l~ 272 (298)
T 1nzj_A 213 PDYIHLPLALNPQGAKLSKQNHAPALPK------GDPR--------------PVLIAALQFLGQQAEAHWQDFSVEQILQ 272 (298)
T ss_dssp CEEEEECBCCC-------------CCCS------SCCH--------------HHHHHHHHHTTCCCCSCGGGSCHHHHHH
T ss_pred CeEEEeeeeECCCCCcccccCCccChhc------CCcc--------------HHHHHHHHHcCCCCCcccccCCHHHHHH
Confidence 999998886 999999999999987765 2444 33667777778876542 34443 478
Q ss_pred HHHHHhhhccCCcceeE
Q 003751 572 YHIREELNKTAPRTMVV 588 (798)
Q Consensus 572 ~~ir~~~~~~~~R~~av 588 (798)
++++.|....+++.+.+
T Consensus 273 ~~~~~f~~~~~~~~~~~ 289 (298)
T 1nzj_A 273 SAVKNWRLTAVPESAIV 289 (298)
T ss_dssp HHHHTCCGGGSCCCSBC
T ss_pred HHHHhCCHhhCCCCCCc
Confidence 99999999999998753
No 13
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-55 Score=440.87 Aligned_cols=182 Identities=29% Similarity=0.498 Sum_probs=176.7
Q ss_pred ChhHHHHHHHhcCCChhhHHHhhhCHHHHHHHHHHHHHcccCCCCchhhhHHHHHHHhhCCCCCCCchHHHHHHHhcCCC
Q 003751 8 DKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHRPTLLLYIVSSKI 87 (798)
Q Consensus 8 ~~~~~~~~f~~iGl~e~ka~e~~kn~~~~~~l~~~I~~a~~~~~~~~~~g~lly~la~~~~~~~~~~~~~~~~yI~~~~i 87 (798)
+.+++++||++|||+|+||+||+||++++++|..+|++|+...+||+++|+|||+|||+++++..+||++|++||++|+|
T Consensus 3 ~~~~l~~lf~~iGL~e~kaket~kN~kls~~L~~~i~ea~~~~~~dk~~g~LLy~latk~k~~~~~~r~~l~~~I~~gkl 82 (187)
T 3tl4_X 3 SVEELTQLFSQVGFEDKKVKEIVKNKKVSDSLYKLIKETPSDYQWNKSTRALVHNLASFVKGTDLPKSELIVNGIINGDL 82 (187)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHTTSHHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHTTSC
T ss_pred chHHHHHHHHHcCCChhHHHHHHhCHHHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhccCccchhHHHHHHHHHhccC
Confidence 34789999999999999999999999999999999999998778999999999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHh--hCCC
Q 003751 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRK--RLPW 165 (798)
Q Consensus 88 kt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~~RY~~n~g~l~~~~r~--~lkw 165 (798)
+|++||+||++|++++ .+++|.++||++|||||+||+|||+++|++||++|+++|+++||+ |+|.||++||+ .|||
T Consensus 83 kt~~Qv~AAl~yl~~~-~~~id~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~i~~~RY~-~~g~ll~~vr~~p~LkW 160 (187)
T 3tl4_X 83 KTSLQVDAAFKYVKAN-GEASTKMGMNENSGVGIEITEDQVRNYVMQYIQENKERILTERYK-LVPGIFADVKNLKELKW 160 (187)
T ss_dssp CSHHHHHHHHHHHHHH-GGGCCHHHHHHTTTTTCCCCHHHHHHHHHHHHHHTHHHHHHHGGG-GHHHHHHHHHTCGGGTT
T ss_pred CcHHHHHHHHHHHHhC-CCCCCHHHHHHHCCCCeEeCHHHHHHHHHHHHHHhHHHHHHhccc-cHHHHHHHHhcccCCCC
Confidence 9999999999999988 489999999999999999999999999999999999999999999 99999999999 7999
Q ss_pred CChhhHHHHHHHHHHHhcCCCchhhh
Q 003751 166 ADPKIVKQLIDARMYELLGERTAADI 191 (798)
Q Consensus 166 ad~~~~k~~~d~~~l~lLgpK~~~d~ 191 (798)
|||+.||++||+||+++|||||++|+
T Consensus 161 Ad~~~vK~~vD~~~l~lLGPKte~D~ 186 (187)
T 3tl4_X 161 ADPRSFKPIIDQEVLKLLGPKDERDL 186 (187)
T ss_dssp SCTTSHHHHHHHHHHHHHCSCCGGGC
T ss_pred CCHHHHHHHHHHHHHHHcCCcccccc
Confidence 99999999999999999999999985
No 14
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.95 E-value=1.1e-29 Score=291.75 Aligned_cols=277 Identities=14% Similarity=0.098 Sum_probs=176.8
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHH-----HHcCCEEEEEeecCCcccch--------------------------
Q 003751 275 NVLTRFPPEPNGYLHIGHAKAMFVDFGLA-----KERGGYCYLRYDDTNPEAEK-------------------------- 323 (798)
Q Consensus 275 ~v~tRFaPsPtG~LHIGharaal~n~l~A-----r~~~G~~iLRidDTDp~Re~-------------------------- 323 (798)
.++..-+|||||++||||+|++++++++| ++++|+|++||||||+.|..
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 46666699999999999999999997775 57899999999999965533
Q ss_pred ----HHHHHHHHHHHHHcCCCCCcccCCch-hHH-HHHHHHHHHHHcC-CccccCCCHHHHH--------HHhccCCCCC
Q 003751 324 ----KEYIDHIEEIVQWMGWEPFKITYTSD-YFQ-ELYELAVELIRRG-HAYVDHQTPEEIK--------EYREKKMNSP 388 (798)
Q Consensus 324 ----~e~~~~I~edL~wLGl~pd~i~yqSd-~~~-~~ye~a~~LI~~G-~AY~C~cs~eel~--------~~r~~~y~~~ 388 (798)
..+.+.|+++|+|||+.||.. +||+ |.+ .|.+++++|+++| .+|.|.+....+. -.+..+|...
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~~D~~-~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~~~~~~~~~~~~ 179 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIEVDLL-YASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPE 179 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCCEEE-EHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCTTCCSEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEE-echhhccchHHHHHHHHHHHchHHHHHHHHhhccccccccccCCceeccccchh
Confidence 449999999999999999876 9999 888 8999999999999 6665542111100 0000123334
Q ss_pred CCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccE--EEEEecCCCCCCCCcccccccccccceeeccCC
Q 003751 389 WRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI--AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIE 466 (798)
Q Consensus 389 ~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V--~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~ 466 (798)
|+..+.+ . .... ..++|++.. .+...+.|++ .++.. |.-+ +++|+|+|+++|| .|
T Consensus 180 ~~~~~~~--~---------~~~~-~~~~~f~~~--~g~~~~~d~~~G~g~~~------w~~d-~~~~~~~l~~~vd--~~ 236 (523)
T 1irx_A 180 HRREAEI--I---------EWDG-GWKVKYKCP--EGHEGWVDIRSGNVKLR------WRVD-WPMRWSHFGVDFE--PA 236 (523)
T ss_dssp TCCEECE--E---------EECS-SSCEEECCS--SSCCCEECTTSSCEEEC------HHHH-HHHHHHHSCCCBC--CE
T ss_pred hCCcccc--c---------ccCC-CCceeeeec--CCCccccCCcCCCCCCC------CCcc-hHhhHHHcCCCCc--CC
Confidence 4433211 0 0011 123555541 2223333333 22211 1112 2677888988877 88
Q ss_pred CcceEecCcccccchhhHHHHH-HHhCCCCCceeeeeeecCC--CeeeeccccccccccCccCCCCCcchhhHHHHHHCC
Q 003751 467 NITHSLCTLEFETRRASYFWLL-HALGLYQPYVWEYSRLNVS--NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRG 543 (798)
Q Consensus 467 gITHviRG~E~~~~t~~q~~L~-~aLg~~~P~~w~f~~Ln~~--g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG 543 (798)
|++|+.+|. +.+.+.+++ .+||+..|.+.|++++..+ |.|||||+++ ..++..++++
T Consensus 237 G~Dh~~~h~----s~~~~~~i~~~alG~~~p~~~h~~~i~~~g~g~KmSKs~Gn---------------~i~~~~~~~~- 296 (523)
T 1irx_A 237 GKDHLVAGS----SYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGN---------------VILLSDLYEV- 296 (523)
T ss_dssp EHHHHSTTS----HHHHHHHHHHHHHCCCCCBCCEECCEEESCC---------C---------------CCCHHHHHTT-
T ss_pred CcCccCCCc----chhhHHHHHHHHhCCCCCeEEEEEEEEeCCCCCCCCCcCCC---------------CCCHHHHHHH-
Confidence 999988761 112223343 7999988877777887555 9999999997 3579999998
Q ss_pred CChHHHHHHHHHcCCCCCCccccHh-hHHHHHHHhhhccCCcceeEecce--eEEEEe
Q 003751 544 VTSTSINAFVQGIGISRSDSLIRLD-RLEYHIREELNKTAPRTMVVLNPL--KVVITN 598 (798)
Q Consensus 544 ~~PeAI~~fl~~lG~s~~~~~~~~~-~Le~~ir~~~~~~~~R~~av~dp~--kl~i~N 598 (798)
|.|+|+++|+++.|+.. +..++++ .|.++.+.+. ++.+..+.+++. |+.|.|
T Consensus 297 ~~pdalR~~l~~~~~~~-~~~fs~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~n 351 (523)
T 1irx_A 297 LEPGLVRFIYARHRPNK-EIKIDLGLGILNLYDEFE--KVERIYFGVEGGKGDDEELR 351 (523)
T ss_dssp SCHHHHHHHHHSSCTTS-CEEECCSTTHHHHHHHHH--HHHHHHTTSCC-----CHHH
T ss_pred cCHHHHHHHHHhcCCCC-CceeCcchhHHHHHHHHH--HHHHHHhcccccchhhhhhc
Confidence 99999999999988864 4567777 7888877663 344444455554 355555
No 15
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.92 E-value=1.6e-24 Score=245.34 Aligned_cols=252 Identities=15% Similarity=0.140 Sum_probs=186.8
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCcc---c----------chHHHHHHHHHHHHHcCCCC-
Q 003751 281 PPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPE---A----------EKKEYIDHIEEIVQWMGWEP- 341 (798)
Q Consensus 281 aPsPtG~LHIGharaal~n~l~Ar~-----~~G~~iLRidDTDp~---R----------e~~e~~~~I~edL~wLGl~p- 341 (798)
+|+|+|++||||+|++++.+.+||. |+..|+.+++|+|.+ + ....+.+.+.++++|||+.+
T Consensus 29 gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~~LgI~~~ 108 (461)
T 1li5_A 29 GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRP 108 (461)
T ss_dssp CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 8888899999999999999999983 667999999999964 1 14588999999999999996
Q ss_pred CcccCCchhHHHHHHHHHHHHHcCCcccc------CCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceE
Q 003751 342 FKITYTSDYFQELYELAVELIRRGHAYVD------HQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 415 (798)
Q Consensus 342 d~i~yqSd~~~~~ye~a~~LI~~G~AY~C------~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~ 415 (798)
|..+++|+|.+.+.+.+++|+++|+||.+ +|..+. ..|...|.. +++ +|..|.
T Consensus 109 d~~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~------~~yg~lsg~-~~~-------~l~~g~------- 167 (461)
T 1li5_A 109 DMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD------PTYGVLSRQ-DLD-------QLQAGA------- 167 (461)
T ss_dssp SBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGC------TTTTTTTTC------------------------
T ss_pred cccccccchHHHHHHHHHHHHHCCCEEEecCCCEEEecccc------cccccccCC-CHH-------HhhcCC-------
Confidence 77789999999999999999999999986 665531 234444432 222 233332
Q ss_pred EEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-ccccccccccee-eccCCCcceEec--Ccc----cccchhhHHHH
Q 003751 416 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHCI-VDSIENITHSLC--TLE----FETRRASYFWL 487 (798)
Q Consensus 416 lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~-~g~PTY~fa~~V-DD~l~gITHviR--G~E----~~~~t~~q~~L 487 (798)
|+..+ ....+..|+++|+...+.++.|.++| .++|+||.+|++ .....|.++.|+ |.| |+.+.+.|...
T Consensus 168 -rv~~~--~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl~fpH~~~~~aq~~a 244 (461)
T 1li5_A 168 -RVDVV--DDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTC 244 (461)
T ss_dssp ----------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHHHHHHHH
T ss_pred -cccch--hcccCccceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCccCchHHHHHHHHHHH
Confidence 22222 22344589999998777778888899 789999999974 233346778888 888 44455544332
Q ss_pred HHHhCCCCCceeee-eeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCcccc
Q 003751 488 LHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 566 (798)
Q Consensus 488 ~~aLg~~~P~~w~f-~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~ 566 (798)
++|.+.|.+|.+ ++++.+|.|||||.|+ ..++..+.++ |.|+++|.|+++.. ..++..++
T Consensus 245 --~~g~~~~~~~~h~g~v~~~G~KMSKS~GN---------------~v~~~dll~~-~g~dalR~~ll~~~-~~~~~~fs 305 (461)
T 1li5_A 245 --AHDGQYVNYWMHSGMVMVDREKMSKSLGN---------------FFTVRDVLKY-YDAETVRYFLMSGH-YRSQLNYS 305 (461)
T ss_dssp --HSSSCCEEEECCBCCEEETTBCCCGGGTC---------------CCBHHHHHTT-SCHHHHHHHHHSSC-TTSCEEEC
T ss_pred --hcCCCCCcEEEEeeEEEECCeEccccCCC---------------ccChhHHhhh-CCHHHHHHHHHcCC-cCCCCCCC
Confidence 258877878876 8899999999999998 4688898886 99999999999744 34556788
Q ss_pred HhhHHHHHH
Q 003751 567 LDRLEYHIR 575 (798)
Q Consensus 567 ~~~Le~~ir 575 (798)
++.|.++.+
T Consensus 306 ~~~l~~~~~ 314 (461)
T 1li5_A 306 EENLKQARA 314 (461)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877644
No 16
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.91 E-value=1.4e-24 Score=245.06 Aligned_cols=249 Identities=13% Similarity=0.122 Sum_probs=184.2
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHHcCCCCC
Q 003751 281 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWEPF 342 (798)
Q Consensus 281 aPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDTDp~-------------Re~~e~~~~I~edL~wLGl~pd 342 (798)
+|+|+|++||||+|++++.+.++| .|+..|+.++||+|.+ .....|.+.+.+++++||+.++
T Consensus 32 GPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~LgI~~d 111 (462)
T 3tqo_A 32 GMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRVLSP 111 (462)
T ss_dssp CCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 899999999999999999888877 3667999999999964 2246889999999999999986
Q ss_pred c-ccCCchhHHHHHHHHHHHHHcCCccc------cCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceE
Q 003751 343 K-ITYTSDYFQELYELAVELIRRGHAYV------DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 415 (798)
Q Consensus 343 ~-i~yqSd~~~~~ye~a~~LI~~G~AY~------C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~ 415 (798)
. .+++|+|.+.+.+.+++|+++|+||. ++|.+.. +.|+..++ ++.+ +|..|.
T Consensus 112 ~~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~------~~yg~Ls~-~~~~-------~~~~g~------- 170 (462)
T 3tqo_A 112 DQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRF------KDYGKLSH-RHLD-------ELQAGA------- 170 (462)
T ss_dssp SBCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTC------TTTTTTTT-CSCC--------------------
T ss_pred ccccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccc------cccccccC-CChH-------HhhccC-------
Confidence 4 56999999999999999999999993 5665432 33443332 2222 233332
Q ss_pred EEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-ccccccccccee----------eccCCCcceEecCcccccchhhH
Q 003751 416 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHCI----------VDSIENITHSLCTLEFETRRASY 484 (798)
Q Consensus 416 lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~-~g~PTY~fa~~V----------DD~l~gITHviRG~E~~~~t~~q 484 (798)
|+..+ ..+.+..||++|+...+.+|.|.++| .|.|+||+.|++ |-|-.|+.+++ .|+.+...|
T Consensus 171 -r~~~~--~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~F---pHheneiaq 244 (462)
T 3tqo_A 171 -RVEVS--DSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKF---PHHENEIAQ 244 (462)
T ss_dssp ---------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGTT---THHHHHHHH
T ss_pred -ccccc--cccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEcccccccc---HHHHhHHHH
Confidence 43322 34566789999999999999999999 899999999963 44444444433 345555555
Q ss_pred HHHHHHhCCCCCceeee-eeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCc
Q 003751 485 FWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS 563 (798)
Q Consensus 485 ~~L~~aLg~~~P~~w~f-~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~ 563 (798)
.. -+.|.+.+.+|.| ++++.+|.|||||.|+ +.|++.+... |.|.++|-|+++.++. ++.
T Consensus 245 s~--a~~g~p~~~~w~H~g~v~~~G~KMSKSlGN---------------~i~~~dll~~-~g~dalR~~lls~~yr-~~l 305 (462)
T 3tqo_A 245 SE--AGEEKPFVKLWMHAGLLEINKEKMSKSLGN---------------IISIREALKE-SDVEVLRYFLLSGHYR-NPL 305 (462)
T ss_dssp HH--HHHSSCCEEEEEEECCEEETTEECCTTTTC---------------CCBHHHHHHH-SCHHHHHHHHHHSCTT-SCE
T ss_pred HH--HHcCCCcceEEEEccEEecCCcCccccCCC---------------cccHHHHHhh-cChHHhhhhhccCCCC-CCc
Confidence 32 2347677889987 6789999999999998 4688888875 9999999999987765 445
Q ss_pred cccHhhHHHHHH
Q 003751 564 LIRLDRLEYHIR 575 (798)
Q Consensus 564 ~~~~~~Le~~ir 575 (798)
.++.+.|+++.+
T Consensus 306 ~fs~~~l~~a~~ 317 (462)
T 3tqo_A 306 SYSKENLENGRL 317 (462)
T ss_dssp EECHHHHHHHHH
T ss_pred CcCHHHHHHHHH
Confidence 688888877643
No 17
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.87 E-value=3.6e-22 Score=223.25 Aligned_cols=260 Identities=15% Similarity=0.124 Sum_probs=176.0
Q ss_pred EeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCccc-------------chHHHHHHHHHHHHHcCCC
Q 003751 279 RFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEA-------------EKKEYIDHIEEIVQWMGWE 340 (798)
Q Consensus 279 RFaPsPtG~LHIGharaal~n~l~Ar~-----~~G~~iLRidDTDp~R-------------e~~e~~~~I~edL~wLGl~ 340 (798)
-..|+|+|++||||+|++++.+.+||. |+..|+..+||.+.+- ....+.+.|.+++++||+.
T Consensus 44 ~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~Lgi~ 123 (414)
T 3c8z_A 44 VCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALRVL 123 (414)
T ss_dssp ECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred eCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 448999999999999999999988884 7789999999998542 2467889999999999999
Q ss_pred -CCcccCCchhHHHHHHHHHHHHHcCCccccCCCHH-----HHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCce
Q 003751 341 -PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-----EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKA 414 (798)
Q Consensus 341 -pd~i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~e-----el~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~ 414 (798)
+|..++.|+|.+.+++..++|+++|++|.+.+..+ .+.+. ..|...+ .+..++.+..+. .+ .++.
T Consensus 124 ~~d~~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~~--~~~g~l~-~~~~~~~~~~~~---~~---~~~~ 194 (414)
T 3c8z_A 124 PPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADAT--AQFGYES-GYDRDTMLTLFA---ER---GGDP 194 (414)
T ss_dssp CCSEEEEGGGCHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTSS--TTTTTTT-CCCHHHHHHHHH---HT---TCCT
T ss_pred CCcceecccchHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchhh--hhhHhhc-CCCHHHHHHHHh---hc---cccc
Confidence 88878889999999999999999999998765400 01111 1111111 122332221110 00 0110
Q ss_pred EEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccc----------eeeccCCCcceEecCcccccchhh
Q 003751 415 TLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAH----------CIVDSIENITHSLCTLEFETRRAS 483 (798)
Q Consensus 415 ~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~-~g~PTY~fa~----------~VDD~l~gITHviRG~E~~~~t~~ 483 (798)
+ ........|+++|++..+.++.|.++| .|+|.||..| ++|.|..|++|+. -|+.+.+.
T Consensus 195 ------~-~~~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D~~~---~H~~~~~a 264 (414)
T 3c8z_A 195 ------D-RPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIF---PHHEYSAA 264 (414)
T ss_dssp ------T-CTTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEEEEEEGGGTT---THHHHHHH
T ss_pred ------c-ccccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCCCceEEEecccccc---HHHHHHHH
Confidence 0 112345589999999877788887788 6899999876 6788888888764 35555544
Q ss_pred HHHHHHHh-CC-CCCceeee-eeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCC
Q 003751 484 YFWLLHAL-GL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR 560 (798)
Q Consensus 484 q~~L~~aL-g~-~~P~~w~f-~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~ 560 (798)
| ..++ |. +.+.+|-+ ++++.+|.|||||+++ ..++..+.++||.|+++|.|++. +-..
T Consensus 265 ~---~~a~~g~~~~~~~~~h~g~v~~~G~KMSKS~GN---------------~v~~~~ll~~g~g~D~lR~~ll~-~~~~ 325 (414)
T 3c8z_A 265 H---AESVTGERRFARHYVHTGMIGWDGHKMSKSRGN---------------LVLVSQLRAQGVDPSAIRLGLFS-GHYR 325 (414)
T ss_dssp H---HHHHHCCSCSEEEEEEECCBC----------------------------CBHHHHHHTTCCHHHHHHHHHT-SCTT
T ss_pred H---HHHhcCCCCcCeEEEEcCEEecCCeEcccccCC---------------cCCHHHHhhccCCcchheeEEEe-cCcC
Confidence 4 2333 76 44556766 7999999999999998 46899999999999999999998 4445
Q ss_pred CCccccHhhHHHHHHH
Q 003751 561 SDSLIRLDRLEYHIRE 576 (798)
Q Consensus 561 ~~~~~~~~~Le~~ir~ 576 (798)
.+..++++.|.++.+.
T Consensus 326 ~d~~fs~~~l~~~~~~ 341 (414)
T 3c8z_A 326 EDRFWSNEVLDEANAR 341 (414)
T ss_dssp SCBCCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHH
Confidence 5667888888877654
No 18
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.86 E-value=1.3e-21 Score=222.10 Aligned_cols=252 Identities=14% Similarity=0.094 Sum_probs=165.3
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecC----------Ccc-------------cchHHHHHHHHH
Q 003751 281 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDT----------NPE-------------AEKKEYIDHIEE 332 (798)
Q Consensus 281 aPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDT----------Dp~-------------Re~~e~~~~I~e 332 (798)
+|+|+|++||||||++++.+.++| .|...|+..|+|+ |.+ .....|.+.+.+
T Consensus 49 gPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~~~~~f~~ 128 (501)
T 3sp1_A 49 GPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTEAFFN 128 (501)
T ss_dssp CCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHHHHHHHHH
T ss_pred CCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 788889999999999998877776 5777899999999 432 124678999999
Q ss_pred HHHHcCCCCCc-ccCCchhHHHHHHHHHHHHHcCCccc-----cCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhc
Q 003751 333 IVQWMGWEPFK-ITYTSDYFQELYELAVELIRRGHAYV-----DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRN 406 (798)
Q Consensus 333 dL~wLGl~pd~-i~yqSd~~~~~ye~a~~LI~~G~AY~-----C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~ 406 (798)
+++.||+.++. .+..++|.+.+.+..++|+++|+||. .||... . +.|.... .++.. ++|..
T Consensus 129 d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~----f--~~yG~ls-~~~~~------~~~~~ 195 (501)
T 3sp1_A 129 DCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC----F--KSYGEMA-GIDLI------DKDMT 195 (501)
T ss_dssp HHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG----C--TTTTTTT-C---------------
T ss_pred HHHHcCCCCCCcccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc----c--CCccccC-CCChh------hhhcc
Confidence 99999999763 56789999999999999999999995 344332 1 2343221 11220 23444
Q ss_pred CcccCCceEEEEEecCCCCCCCcCccEEEEE--ec-CCCCCCCCcc-ccccccccccee----------eccCCCcceEe
Q 003751 407 GRIEEGKATLRMKQDMQNDNFNMYDLIAYRI--KF-TPHPHAGDKW-CIYPSYDYAHCI----------VDSIENITHSL 472 (798)
Q Consensus 407 G~~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri--~~-~~h~~~gd~~-~g~PTY~fa~~V----------DD~l~gITHvi 472 (798)
|. |.. ....+.+..||++|+. .. ...+.|.++| .|+|+||..|+. |-|..|+.+++
T Consensus 196 g~--------r~~--~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEcsam~~~~lg~~~DIH~gG~DLif 265 (501)
T 3sp1_A 196 LP--------RVD--VDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLGGVDHIG 265 (501)
T ss_dssp ------------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHHHHHHHHHHHHTTTCCCEEEEEGGGTT
T ss_pred CC--------ccC--cccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCchHHHHHHHHHHcCCCceEEeecccccc
Confidence 43 322 2234566799999976 22 3446788999 799999999853 44444444443
Q ss_pred cCcccccchhhHHHHHHHhCCCCCceeee-eeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHH
Q 003751 473 CTLEFETRRASYFWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINA 551 (798)
Q Consensus 473 RG~E~~~~t~~q~~L~~aLg~~~P~~w~f-~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~ 551 (798)
-|+.+.+.|.. -+.|-+.+.+|.+ ++++.+|.|||||.|+ +.|++.+.++||.|+++|-
T Consensus 266 ---pHheneiAqs~--a~~g~~~~~~w~H~g~v~~~G~KMSKSlGN---------------~it~~dll~~gyg~d~lR~ 325 (501)
T 3sp1_A 266 ---VHHINEIAIAE--CFLNKKWCDVFVHGEFLIMDYNKMSKSRGN---------------FITVKDLEDQNFSPLDFRY 325 (501)
T ss_dssp ---THHHHHHHHHH--HHHTSCCCSEEEEECCEECC-------------------------CCCHHHHHHTTCCHHHHHH
T ss_pred ---chHHHHHHHHH--HccCCCCCeEEEEeeeEeeCCeEccccCCC---------------cCCHHHHHhcCCCHHHHHH
Confidence 34445544422 1235567889988 8999999999999998 4789999999999999999
Q ss_pred HHHHcCCCCCCccccHhhHHHHHHH
Q 003751 552 FVQGIGISRSDSLIRLDRLEYHIRE 576 (798)
Q Consensus 552 fl~~lG~s~~~~~~~~~~Le~~ir~ 576 (798)
|+++..+. ++..++.+.|+++.+.
T Consensus 326 ~lls~~yr-~~l~fs~~~l~~a~~~ 349 (501)
T 3sp1_A 326 LCLTSHYR-NQLKFSLDNLQASKIA 349 (501)
T ss_dssp HHHTSCTT-SCEECCHHHHHHHHHH
T ss_pred HHHhccCC-CCCccCHHHHHHHHHh
Confidence 99987665 4557888888877655
No 19
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.80 E-value=2.6e-19 Score=204.04 Aligned_cols=270 Identities=14% Similarity=0.080 Sum_probs=171.7
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC----------------cccchHHHHHHHHHHHHH
Q 003751 275 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQW 336 (798)
Q Consensus 275 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDTD----------------p~Re~~e~~~~I~edL~w 336 (798)
-+++.-+|.|||+|||||+|++++.+.+||. ..|..++++.++| |.....++.+.|.++++|
T Consensus 7 ~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 86 (497)
T 2csx_A 7 FYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWEF 86 (497)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3788889999999999999999999999994 5999999999998 566677899999999999
Q ss_pred cCCCCCcccCCch--hHHHHHHHHHHHHHcCCcccc-----CCCHHHHHHHhccCCC-CCCC--CCChHHHHHHHHHhhc
Q 003751 337 MGWEPFKITYTSD--YFQELYELAVELIRRGHAYVD-----HQTPEEIKEYREKKMN-SPWR--DRPIAESLKLFEDMRN 406 (798)
Q Consensus 337 LGl~pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~C-----~cs~eel~~~r~~~y~-~~~R--~~s~ee~l~~f~~m~~ 406 (798)
||+.||..+++|+ |.+.+.+...+|+++|++|.| .|...+..-....... +.|. ..+++. +.
T Consensus 87 lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~-------~~- 158 (497)
T 2csx_A 87 LKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEY-------IK- 158 (497)
T ss_dssp TTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC----------------------------------------C-
T ss_pred hCCcCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeE-------Ee-
Confidence 9999998778888 988999999999999999988 4655432111000000 1221 111110 00
Q ss_pred CcccCCceEEEEEecC-------------C--CC-----------CCCcCccEEEEEecCCCCCCCCcccccccccc---
Q 003751 407 GRIEEGKATLRMKQDM-------------Q--ND-----------NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDY--- 457 (798)
Q Consensus 407 G~~~~g~~~lR~K~d~-------------~--~~-----------~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~f--- 457 (798)
...+.++++. . .+ ....+|+.+-|.... .-||.+.-+.|+|++
T Consensus 159 ------~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~--~~WG~~iP~~~~~~i~vW 230 (497)
T 2csx_A 159 ------EPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSR--VKWGIPVPFDPEHTIYVW 230 (497)
T ss_dssp ------CEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTT--CCSSEEETTEEEEEECSH
T ss_pred ------cCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCC--CCCceecCCCCCceEEEe
Confidence 0112222110 0 00 012467777663110 013311111124442
Q ss_pred -------cceeec---cCCCcceEecCccccc-chhhHHHHHHHhCCCCCc-eeeeeeecCCCeeeeccccccccccCcc
Q 003751 458 -------AHCIVD---SIENITHSLCTLEFET-RRASYFWLLHALGLYQPY-VWEYSRLNVSNTVMSKRKLNFLVTNKYV 525 (798)
Q Consensus 458 -------a~~VDD---~l~gITHviRG~E~~~-~t~~q~~L~~aLg~~~P~-~w~f~~Ln~~g~KLSKR~~~~lv~~g~v 525 (798)
.+++.| ....+++.+.|.|+.. +.......+.++|+..|. +++++++..+|+|||||+|+
T Consensus 231 ~ds~~~~~s~~~~~~~~~~p~di~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~~G~KMSKS~GN-------- 302 (497)
T 2csx_A 231 FDALFNYISALEDKVEIYWPADLHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTVEGKKMSKTLGN-------- 302 (497)
T ss_dssp HHHHTHHHHTTTTTHHHHCSCSCEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEESSSSBCCTTTTC--------
T ss_pred cccchhhcccCCCcchhhCCceEEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEeCCceeCCcCCC--------
Confidence 333333 2236777788988865 111111234577987777 45678888899999999998
Q ss_pred CCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHH
Q 003751 526 DGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 576 (798)
Q Consensus 526 ~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~ 576 (798)
..++..+.+ +|.++|+|.|++..+-...+..++++.+.+..+.
T Consensus 303 -------~i~~~dli~-~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~ 345 (497)
T 2csx_A 303 -------VVDPYEVVQ-EYGLDEVRYFLLREVPFGQDGDFSKKAILNRING 345 (497)
T ss_dssp -------CCCHHHHHH-HHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHH
T ss_pred -------CCCHHHHHH-HCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHH
Confidence 346777776 4899999999998766666678888888776543
No 20
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.73 E-value=2.6e-17 Score=187.51 Aligned_cols=276 Identities=16% Similarity=0.069 Sum_probs=168.0
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCC----------------cccchHHHHHHHHHHHHHc
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQWM 337 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDTD----------------p~Re~~e~~~~I~edL~wL 337 (798)
+++--+|+|||+|||||+|++++.+.+|| ...|.-++++.++| |.....++.+.|.+++++|
T Consensus 6 ~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 85 (500)
T 2d5b_A 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLL 85 (500)
T ss_dssp EEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 56667799999999999999999999999 45999999999998 5555678899999999999
Q ss_pred CCCCCcccCCch--hHHHHHHHHHHHHHcCCccccC-----CCHHHHHHHhccCCCCCCC--CCChHHH--------HHH
Q 003751 338 GWEPFKITYTSD--YFQELYELAVELIRRGHAYVDH-----QTPEEIKEYREKKMNSPWR--DRPIAES--------LKL 400 (798)
Q Consensus 338 Gl~pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~C~-----cs~eel~~~r~~~y~~~~R--~~s~ee~--------l~~ 400 (798)
|+.+|..+++++ |.+.+.+..++|.++|++|.+. |...+-.-....-..+.|. ..+++.. +..
T Consensus 86 gi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~wf~~l~~ 165 (500)
T 2d5b_A 86 GIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEK 165 (500)
T ss_dssp TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGG
T ss_pred CCcCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCCeeeEEecCceEEEcHH
Confidence 999998777887 8888889999999999999862 2221100000000011121 1111100 000
Q ss_pred HHHhhcCcccCC-ceEEE--EEecC-CCCCCCcCccEEEEEecCCCCCCCCcccccc---------------------cc
Q 003751 401 FEDMRNGRIEEG-KATLR--MKQDM-QNDNFNMYDLIAYRIKFTPHPHAGDKWCIYP---------------------SY 455 (798)
Q Consensus 401 f~~m~~G~~~~g-~~~lR--~K~d~-~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~P---------------------TY 455 (798)
|.+......+.+ .++.- .+..+ ..-...++|+.+-|.... ..||.+ .| .|
T Consensus 166 ~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~--~~WG~p---iP~~~~~v~~vWfds~~~y~~~~g~ 240 (500)
T 2d5b_A 166 YRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSR--VPWGIP---LPWDENHVTFVWFDALLNYVSALDY 240 (500)
T ss_dssp GHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTT--CCSSCE---ETTEEEEEECHHHHHHTHHHHTTTT
T ss_pred HHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeeccccccc--ccCccc---cCCCCCCeeEEccccchhhHHHcCC
Confidence 000000000000 00000 00000 000022467777772110 013321 12 34
Q ss_pred cccceeeccCCCcceEecCcccccchhhH-H--HHHHHhCCCCCce-eeeeeecC-CCeeeeccccccccccCccCCCCC
Q 003751 456 DYAHCIVDSIENITHSLCTLEFETRRASY-F--WLLHALGLYQPYV-WEYSRLNV-SNTVMSKRKLNFLVTNKYVDGWDD 530 (798)
Q Consensus 456 ~fa~~VDD~l~gITHviRG~E~~~~t~~q-~--~L~~aLg~~~P~~-w~f~~Ln~-~g~KLSKR~~~~lv~~g~v~gWdD 530 (798)
+..|..++.. +.+..+.|.|+.. +.+ . .++.++|+..|.. +++|++.. +|+|||||+|+
T Consensus 241 ~~~~~~~~~~-p~di~~~G~D~~~--fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~G~KMSKS~GN------------- 304 (500)
T 2d5b_A 241 PEGEAYRTFW-PHAWHLIGKDILK--PHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGN------------- 304 (500)
T ss_dssp TTCHHHHHHG-GGEEEEEEGGGHH--HHHTHHHHHHHHHTCCCCSEEEEECCEECTTSSCCCTTTTC-------------
T ss_pred CCCchHHHcC-CCeEEEEeechhh--hHHHHHHHHHHHcCCCCCcEEEECceEEeCCCCcccccCCC-------------
Confidence 4433222222 4566667888765 211 1 2345779887774 45788887 99999999998
Q ss_pred cchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHH
Q 003751 531 PCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 575 (798)
Q Consensus 531 Pr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir 575 (798)
..++..+.+. |.++++|.|++..+-...+..++++.+.+...
T Consensus 305 --~i~p~d~i~~-~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~ 346 (500)
T 2d5b_A 305 --VVDPFALLEK-YGRDALRYYLLREIPYGQDTPVSEEALRTRYE 346 (500)
T ss_dssp --CCCHHHHHHH-HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHH
T ss_pred --CCCHHHHHHh-cCcHHHHHHHHhcCCcccCCCCCHHHHHHHHH
Confidence 3466777764 89999999999866555666888888877654
No 21
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.2e-16 Score=174.23 Aligned_cols=193 Identities=14% Similarity=0.075 Sum_probs=136.0
Q ss_pred cHHHHHHhhhhcCC--eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec----CCcccch--------HHH
Q 003751 261 TKEVLDKHLEVTGG--NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----TNPEAEK--------KEY 326 (798)
Q Consensus 261 ~~~~~~~hl~~~~g--~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidD----TDp~Re~--------~e~ 326 (798)
+++.|++.|+..+. .|.++|.| ||.|||||++.++.+|.+++ .|+.++++|.| |+..+.. ..+
T Consensus 25 ~~e~L~~~L~~~~~p~~vy~G~~P--TG~LHlG~~~~al~~~~~~q-~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~ 101 (394)
T 2dlc_X 25 NPQIIKDVLEVQKRHLKLYWGTAP--TGRPHCGYFVPMTKLADFLK-AGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYY 101 (394)
T ss_dssp CHHHHHHHHHTSCSCCEEEEEECC--CSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHH
T ss_pred CHHHHHHHHHccCCCeEEEEEeCC--CCCccHHHHHHHHHHHHHHH-cCCcEEEEEcCCccccCCCCCcHHHHHHHHHHH
Confidence 36788888886443 58899988 79999999999999999998 89999999999 7633221 124
Q ss_pred HHHHHHHHHHcCCCCCc--ccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHh
Q 003751 327 IDHIEEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDM 404 (798)
Q Consensus 327 ~~~I~edL~wLGl~pd~--i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m 404 (798)
...|...|.|+|++|++ +.+||+++. +-+++..++ .|.|+||..++..... . +
T Consensus 102 ~~~i~~~l~a~Gldp~k~~i~~qS~~~~-~~~~~~~~~----~l~~~~t~~~l~r~~~-----------~---------~ 156 (394)
T 2dlc_X 102 ELTIKAILRSINVPIEKLKFVVGSSYQL-TPDYTMDIF----RLSNIVSQNDAKRAGA-----------D---------V 156 (394)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEETHHHHT-SHHHHHHHH----HHHTTSCHHHHHHHTT-----------T---------T
T ss_pred HHHHHHHHHHcCCChhHcEEEeCchhcc-hHHHHHHHH----HHhCcCcHHHHhcccH-----------h---------h
Confidence 46777889999999986 789999853 223444444 6899999998875310 0 0
Q ss_pred hcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhH
Q 003751 405 RNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASY 484 (798)
Q Consensus 405 ~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q 484 (798)
.|.. .+ .-.+..+|..--+.|..+++++|+++|.|...+...+
T Consensus 157 -----------~r~~-----~~---------------------~~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~~~~~l~ 199 (394)
T 2dlc_X 157 -----------VKQV-----AN---------------------PLLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLA 199 (394)
T ss_dssp -----------SCCC-----SS---------------------CCTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHH
T ss_pred -----------hccc-----CC---------------------ccceeeechhHhhccHhhhCCCEEecCccHHHHHHHH
Confidence 0000 00 0012455666666677789999999999999999999
Q ss_pred HHHHHHhCCCCCceeeeeee-cCC-Ceeeecccccc
Q 003751 485 FWLLHALGLYQPYVWEYSRL-NVS-NTVMSKRKLNF 518 (798)
Q Consensus 485 ~~L~~aLg~~~P~~w~f~~L-n~~-g~KLSKR~~~~ 518 (798)
..|++.+|+..|...+.+++ +.+ |+|||||.++.
T Consensus 200 rdl~~r~~~~~p~~l~~pll~gl~~G~KMSKS~~ns 235 (394)
T 2dlc_X 200 EENLPSLGYKKRAHLMNPMVPGLAQGGKMSASDPNS 235 (394)
T ss_dssp HHHGGGGTCCCCEEEEECCCCCCC----------CC
T ss_pred HHHHHHcCCCCCEEEecccccCCCCCCcCCCCCCCC
Confidence 99999999988877776664 677 99999999864
No 22
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.65 E-value=7.4e-16 Score=179.48 Aligned_cols=297 Identities=15% Similarity=0.086 Sum_probs=190.5
Q ss_pred CCCccccccCcHHHHHHhhhhc---C---CeeEEEe-CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCC
Q 003751 251 SDGSVLICCNTKEVLDKHLEVT---G---GNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTN 318 (798)
Q Consensus 251 ~~~~~~~~~~~~~~~~~hl~~~---~---g~v~tRF-aPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDTD 318 (798)
.+|++...-+...+...-+... + |+|+.=| .|+|||+|||||+|++++.+.+|| .|...++-.|.|.+
T Consensus 74 ~ggfiN~~l~~~~~~~~~~~~~~~~~~~~g~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G 153 (592)
T 1iq0_A 74 VGGYLNFRLRTEALLREALRPKAPFPRRPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTG 153 (592)
T ss_dssp ETTEEEEEECHHHHHHHHHSCCCCCCCEEEEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTS
T ss_pred cCCEEEEEECHHHHHHHHHHHHHhcCcccCeEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcc
Confidence 3467666666665555554431 1 2566667 899999999999999999888887 34445555566763
Q ss_pred c----------------------------------------------------------ccchHHHHHHHHHHHHHcCCC
Q 003751 319 P----------------------------------------------------------EAEKKEYIDHIEEIVQWMGWE 340 (798)
Q Consensus 319 p----------------------------------------------------------~Re~~e~~~~I~edL~wLGl~ 340 (798)
. .+....+.+.|.++++|||+.
T Consensus 154 ~q~~~li~~~~~~g~d~~~~~~~d~~~g~~y~~~~~~~~~~~~~~~a~~~~~~~e~g~~~~~~~~~~~~~~~~~~~LgI~ 233 (592)
T 1iq0_A 154 RQAAETLFALRHYGLTWDGKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNAR 233 (592)
T ss_dssp HHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHhCCcccCCCCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHcCCE
Confidence 1 112334677889999999999
Q ss_pred CCcccCCchh--HHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCC-CCCCChHHHHHHHHHhhcCccc-CCceEE
Q 003751 341 PFKITYTSDY--FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSP-WRDRPIAESLKLFEDMRNGRIE-EGKATL 416 (798)
Q Consensus 341 pd~i~yqSd~--~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~-~R~~s~ee~l~~f~~m~~G~~~-~g~~~l 416 (798)
+|.....|++ .+.+.+.+++|.++|++|.|.-. .+++. |-..+. .|... -+..++
T Consensus 234 ~D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g----------~~~G~~~~~~~~-----------~g~~~~l~~~vi 292 (592)
T 1iq0_A 234 YDLLVWESDIVRAGLLQKALALLEQSPHVFRPREG----------KYAGALVMDASP-----------VIPGLEDPFFVL 292 (592)
T ss_dssp CSEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSS----------TTTTCEEEECTT-----------TSCSCSCCEEEE
T ss_pred eEEeccCCcccccchHHHHHHHHHHCCCcccCccc----------CcCCCEEEechh-----------cCCCCCCCceEE
Confidence 9987778877 55777889999999999987211 12221 111110 01110 112333
Q ss_pred EEEecCCCCCCCcCcc--EEE--------EEecCCCCCCCCcccccccccccceeeccCCCcceE--ecCcccccchhhH
Q 003751 417 RMKQDMQNDNFNMYDL--IAY--------RIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHS--LCTLEFETRRASY 484 (798)
Q Consensus 417 R~K~d~~~~~~~~~D~--V~~--------Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHv--iRG~E~~~~t~~q 484 (798)
+ |.| .......+|+ ++| |...- |.++| +.|.|+..| +.-...+.+|+ |.|.+|..+.+++
T Consensus 293 ~-ksd-G~~~Y~~~D~a~~~~Kl~l~~~~~~~~~----~~~p~-~r~~w~~~g-~~~~~~~~~~~iyV~g~~h~~~~~~~ 364 (592)
T 1iq0_A 293 L-RSN-GTATYYAKDIAFQFWKMGILEGLRFRPY----ENPYY-PGLRTSAPE-GEAYTPKAEETINVVDVRQSHPQALV 364 (592)
T ss_dssp E-CTT-SCBCHHHHHHHHHHHHTTSSCCCEEEEC----CCSSC-TTCEEEEEE-EEECCCCCSEEEEEEESSSCCCHHHH
T ss_pred E-ecC-CceEEecchHHHHHHHhhhhhhhhhhhh----hcCcc-hhhcccccC-cccCCCCCCEEEEEEeccHHHHHHHH
Confidence 3 322 1122334565 555 43311 12234 367887543 44444567777 7899999999999
Q ss_pred HHHHHHhCCCC-Ccee-eee--eecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCC
Q 003751 485 FWLLHALGLYQ-PYVW-EYS--RLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR 560 (798)
Q Consensus 485 ~~L~~aLg~~~-P~~w-~f~--~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~ 560 (798)
..++.+||+.. +..| |++ .++.+|.|||||.|+ ..++..|++.|+ +++.+++...+..-
T Consensus 365 ~~~~~alG~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn---------------~v~l~dll~~~~--~~~~~~~~~~~~~~ 427 (592)
T 1iq0_A 365 RAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGL---------------AVSVDEVLEEAT--RRARAIVEEKNPDH 427 (592)
T ss_dssp HHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC-------------------CCBHHHHHHHHH--HHHHHHHHHHCTTC
T ss_pred HHHHHHcCCCCCCCcEEEEEeeEEEcCCCcccCCCCC---------------ccCHHHHHHHHH--HHHHHHHHhhCCCC
Confidence 99999999865 3344 554 488899999999998 357899999887 67778887776543
Q ss_pred CCccccHhhHHH-----HHHHhhhccCCcceeEecceeEEEE
Q 003751 561 SDSLIRLDRLEY-----HIREELNKTAPRTMVVLNPLKVVIT 597 (798)
Q Consensus 561 ~~~~~~~~~Le~-----~ir~~~~~~~~R~~av~dp~kl~i~ 597 (798)
++ .+.+.+ ++|-|+....++....||..++...
T Consensus 428 ~~----~e~~a~~vg~~aiRyf~L~~~~~~~~~Fd~d~~~~~ 465 (592)
T 1iq0_A 428 PD----KEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSF 465 (592)
T ss_dssp SC----HHHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHCS
T ss_pred Cc----HHHHHHhhcHHHHHHHHHhcCCCCCCeecHHHHHHH
Confidence 32 223333 6888888888889999988776543
No 23
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.54 E-value=1.1e-14 Score=166.98 Aligned_cols=278 Identities=17% Similarity=0.150 Sum_probs=158.4
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCC----------------cccchHHHHHHHHHHHHHc
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQWM 337 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDTD----------------p~Re~~e~~~~I~edL~wL 337 (798)
+++=-.|+|||+|||||+|++++.+.+|| ...|.-++++.++| |......+.+.|.+++++|
T Consensus 15 ~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 94 (524)
T 2x1l_A 15 YITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKL 94 (524)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 45666799999999999999999999999 46888888888888 2233457899999999999
Q ss_pred CCCCCcccCCch--hHHHHHHHHHHHHHcCCcccc-----CCCHHHH-HHHhc--c---CCCCCCC-CCChHHH------
Q 003751 338 GWEPFKITYTSD--YFQELYELAVELIRRGHAYVD-----HQTPEEI-KEYRE--K---KMNSPWR-DRPIAES------ 397 (798)
Q Consensus 338 Gl~pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~C-----~cs~eel-~~~r~--~---~y~~~~R-~~s~ee~------ 397 (798)
|+.+|..+++|+ |.+.+.+..++|.++|++|.. +|...+- ...+. . +..|+.| ..+++..
T Consensus 95 gi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~qwF 174 (524)
T 2x1l_A 95 NISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYF 174 (524)
T ss_dssp TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEE
T ss_pred CCcCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEecCCeE
Confidence 999998777888 888889999999999999843 3332210 00000 0 0001101 1111100
Q ss_pred --HHHHHHhhcCcccCCceEEE---EEecC-CCCCCCcCccEEEEEec-CCCCCCCC------cc----------ccccc
Q 003751 398 --LKLFEDMRNGRIEEGKATLR---MKQDM-QNDNFNMYDLIAYRIKF-TPHPHAGD------KW----------CIYPS 454 (798)
Q Consensus 398 --l~~f~~m~~G~~~~g~~~lR---~K~d~-~~~~~~~~D~V~~Ri~~-~~h~~~gd------~~----------~g~PT 454 (798)
+..|.+......+.++..+. .+..+ ..-....+|+.+-|... =+++..++ -| .+||.
T Consensus 175 ~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~~~~~g~p~ 254 (524)
T 2x1l_A 175 FRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPD 254 (524)
T ss_dssp ECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTC
T ss_pred eeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCEEEEecCCchHHHHHcCCCC
Confidence 00000000000000000000 00000 00012346777666421 01111111 02 11221
Q ss_pred c---cc--cceeeccCCCcceEecCccccc-chhhHHHHHHHhCCCCC-ceeeeeeecCCCeeeeccccccccccCccCC
Q 003751 455 Y---DY--AHCIVDSIENITHSLCTLEFET-RRASYFWLLHALGLYQP-YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDG 527 (798)
Q Consensus 455 Y---~f--a~~VDD~l~gITHviRG~E~~~-~t~~q~~L~~aLg~~~P-~~w~f~~Ln~~g~KLSKR~~~~lv~~g~v~g 527 (798)
- .| --++|-|.. |.|+.- +......++.++|+..| .+|.++++..+|.|||||+|+
T Consensus 255 ~~~~~~~~~~p~di~~~-------G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~~G~KMSKS~GN---------- 317 (524)
T 2x1l_A 255 TESESFRRYWPADLHMI-------GKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLNRGEKMSKSIGN---------- 317 (524)
T ss_dssp TTSHHHHHHCSCSEEEE-------EGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEECSCSEETTTEE----------
T ss_pred CchHHHHhhCCCeEEEE-------eechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEeCCcccCCcCCC----------
Confidence 0 00 002333333 444431 11101123345688766 578889988899999999998
Q ss_pred CCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHHH
Q 003751 528 WDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 576 (798)
Q Consensus 528 WdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~ 576 (798)
..++..+.++ |.+.++|-|++..+-...+..++++.+.+....
T Consensus 318 -----~v~p~d~i~~-~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~ 360 (524)
T 2x1l_A 318 -----VVDPVNLVDT-FGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNA 360 (524)
T ss_dssp -----SSCHHHHHHH-HCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHH
T ss_pred -----CCCHHHHHHH-cChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Confidence 3567777765 889999999998655556678888888776543
No 24
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.54 E-value=7.6e-14 Score=160.59 Aligned_cols=95 Identities=17% Similarity=0.205 Sum_probs=80.7
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCc-------------ccchHHHHHHHHHHHHHc
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNP-------------EAEKKEYIDHIEEIVQWM 337 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDTDp-------------~Re~~e~~~~I~edL~wL 337 (798)
++|.-.|.|||+|||||+|++++.+.+|| .++..++..+||.+. ......+.+.|.+++++|
T Consensus 28 ~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 107 (536)
T 4dlp_A 28 YITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVL 107 (536)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 78898999999999999999999998888 355578888888653 344668899999999999
Q ss_pred CCCCCcccCCch--hHHHHHHHHHHHHHcCCcccc
Q 003751 338 GWEPFKITYTSD--YFQELYELAVELIRRGHAYVD 370 (798)
Q Consensus 338 Gl~pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~C 370 (798)
|+.+|..++.++ |.+.+.+..++|+++|++|.+
T Consensus 108 gi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~ 142 (536)
T 4dlp_A 108 NSSNDDYIRTSEERHYKASQAIWQAMVANGDIYKG 142 (536)
T ss_dssp TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCcceeCCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence 999997655665 888888999999999999965
No 25
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.54 E-value=2.7e-13 Score=156.80 Aligned_cols=279 Identities=13% Similarity=0.058 Sum_probs=157.5
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCC---EEEEEeecCC-------------cccchHHHHHHHHHHHHHc
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGG---YCYLRYDDTN-------------PEAEKKEYIDHIEEIVQWM 337 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar--~~~G---~~iLRidDTD-------------p~Re~~e~~~~I~edL~wL 337 (798)
+++--+|.|||+|||||+|++++.+.+|| ...| .|+.-+||.+ |......+.+.|.+++++|
T Consensus 21 ~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 100 (560)
T 3h99_A 21 LVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGF 100 (560)
T ss_dssp EEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHc
Confidence 77888899999999999999999999998 3445 4555566443 4455678899999999999
Q ss_pred CCCCCcccCCc--hhHHHHHHHHHHHHHcCCcc-------ccCCCHHHHHHH--hc--c--------CCCC-CCCC-CCh
Q 003751 338 GWEPFKITYTS--DYFQELYELAVELIRRGHAY-------VDHQTPEEIKEY--RE--K--------KMNS-PWRD-RPI 394 (798)
Q Consensus 338 Gl~pd~i~yqS--d~~~~~ye~a~~LI~~G~AY-------~C~cs~eel~~~--r~--~--------~y~~-~~R~-~s~ 394 (798)
|+.||..++.+ +|.+...+...+|.++|++| +|.....-+.+. .+ + +..| .|.. ...
T Consensus 101 gi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce~cg~~~~~ 180 (560)
T 3h99_A 101 NISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSP 180 (560)
T ss_dssp TCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCTTTCCBCCG
T ss_pred CCCCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchhhhccccCCh
Confidence 99999765444 55555667788999999998 332111100000 00 0 0000 0110 000
Q ss_pred HHHHHHHHHhhcCccc--CCceEEEEEecCC----------------CC-------CCCcCccEEEEEecC-CCCCCCCc
Q 003751 395 AESLKLFEDMRNGRIE--EGKATLRMKQDMQ----------------ND-------NFNMYDLIAYRIKFT-PHPHAGDK 448 (798)
Q Consensus 395 ee~l~~f~~m~~G~~~--~g~~~lR~K~d~~----------------~~-------~~~~~D~V~~Ri~~~-~h~~~gd~ 448 (798)
.+-.. -...+.|..- ..+-.+.++++.- .. ...+.|+.+=|-... +++..+++
T Consensus 181 ~~l~~-~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~~ 259 (560)
T 3h99_A 181 TELIE-PKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAP 259 (560)
T ss_dssp GGCEE-EEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCT
T ss_pred hhhcC-CccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCCCC
Confidence 00000 0000000000 0001111221100 00 013467776665421 22222111
Q ss_pred ------c-cccccc-----ccc----------cee-eccCCCcceEecCccccc-chhhHHHHHHHhCCCCCc-eeeeee
Q 003751 449 ------W-CIYPSY-----DYA----------HCI-VDSIENITHSLCTLEFET-RRASYFWLLHALGLYQPY-VWEYSR 503 (798)
Q Consensus 449 ------~-~g~PTY-----~fa----------~~V-DD~l~gITHviRG~E~~~-~t~~q~~L~~aLg~~~P~-~w~f~~ 503 (798)
| +.-..| ++. .-- .|....+.|++ |.|+.. ++..+..++.++|+..|. ++.+++
T Consensus 260 ~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~-G~D~~~fh~~~~~a~l~~~g~~~p~~v~~hg~ 338 (560)
T 3h99_A 260 GKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFI-GKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGY 338 (560)
T ss_dssp TEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEE-EGGGHHHHHTHHHHHHHHTTBCCCSEEEEECC
T ss_pred CceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEe-ccccchhHHHHHHHHHHhCCCCCCcEEEEEeE
Confidence 2 000111 000 000 23344567876 888875 333444577889988774 334677
Q ss_pred ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCC-CCccccHhhHHH
Q 003751 504 LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR-SDSLIRLDRLEY 572 (798)
Q Consensus 504 Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~-~~~~~~~~~Le~ 572 (798)
+..+|.|||||+|+ ..++..+.++ |.+.|+|-|++..+... .+..++++.+.+
T Consensus 339 v~~~G~KMSKS~GN---------------vv~p~d~i~~-~GaDalR~~ll~~~~~~~~d~~f~~~~~~~ 392 (560)
T 3h99_A 339 VTVNGAKMSKSRGT---------------FIKASTWLNH-FDADSLRYYYTAKLSSRIDDIDLNLEDFVQ 392 (560)
T ss_dssp EEETTEECCTTTTC---------------CCBHHHHHHH-SCHHHHHHHHHHHCCSSCCCEEECHHHHHH
T ss_pred EEeCCeeccccCCC---------------cCCHHHHHHH-cCcHHHHHHHHHhCCCCCCCCCcCHHHHHH
Confidence 88899999999998 3567777776 99999999998876543 456788877654
No 26
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=99.41 E-value=1.5e-12 Score=143.67 Aligned_cols=193 Identities=13% Similarity=0.084 Sum_probs=131.7
Q ss_pred cHHHHHHhhhhcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec----CC-cc------cchHHHHHH
Q 003751 261 TKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----TN-PE------AEKKEYIDH 329 (798)
Q Consensus 261 ~~~~~~~hl~~~~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidD----TD-p~------Re~~e~~~~ 329 (798)
+.+-|++.|+...-.|.++|. |||.|||||+..++.+|.+.+ .|+.+++.|.| |+ |. +....+.+.
T Consensus 23 ~~~~L~~~L~~~~~~vy~G~~--PTG~lHlG~~~~~l~~~~~~q-~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~ 99 (372)
T 1n3l_A 23 GEEKLKEILKERELKIYWGTA--TTGKPHVAYFVPMSKIADFLK-AGCEVTILFADLHAYLDNMKAPWELLELRVSYYEN 99 (372)
T ss_dssp CHHHHHHHHTTSCCEEEEEEC--CSSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCEEEeCcC--CCCcccHHHHHHHHHHHHHHH-CCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHH
Confidence 466688888764457899999 579999999999999999987 79999999999 75 32 234455555
Q ss_pred -HHHHHHHcCCCCCc--ccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhc
Q 003751 330 -IEEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRN 406 (798)
Q Consensus 330 -I~edL~wLGl~pd~--i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~ 406 (798)
|...+.|+|++|++ +.+||++. ..-+++..++. |.|+||..+++... .. +
T Consensus 100 ~i~~~lla~Gldp~k~~i~~qS~~~-~~~~~~~~~~~----l~~~~t~~~~~~~~-----~~-----v------------ 152 (372)
T 1n3l_A 100 VIKAMLESIGVPLEKLKFIKGTDYQ-LSKEYTLDVYR----LSSVVTQHDSKKAG-----AE-----V------------ 152 (372)
T ss_dssp HHHHHHHHHTCCCTTEEEEEGGGTT-TSHHHHHHHHH----HHTTSCHHHHHHHT-----TT-----T------------
T ss_pred HHHHHHHHcCCChhhcEEEECCeec-ccHHHHHHHHH----HHhhCcHHHHHhch-----hh-----h------------
Confidence 55567999999985 78999973 12245555554 88999988876530 00 0
Q ss_pred CcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHH
Q 003751 407 GRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFW 486 (798)
Q Consensus 407 G~~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~ 486 (798)
.|.+ .+ .-.+..+|-.--+.|-.+.+.+|+++|.|...+.....-
T Consensus 153 ---------~~~~----------~~----------------~~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~~~~~l~rd 197 (372)
T 1n3l_A 153 ---------VKQV----------EH----------------PLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEK 197 (372)
T ss_dssp ---------SCCC----------SS----------------CCHHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHH
T ss_pred ---------hccc----------CC----------------CcceeeecchHhhccHHHhcCCEEEcChhHHHHHHHHHH
Confidence 0000 00 001223444444444445788999999999999999999
Q ss_pred HHHHhCCCCCceeeeeee-cCCCeeeecccccc
Q 003751 487 LLHALGLYQPYVWEYSRL-NVSNTVMSKRKLNF 518 (798)
Q Consensus 487 L~~aLg~~~P~~w~f~~L-n~~g~KLSKR~~~~ 518 (798)
|++.+|+..|...+.+++ +.+|+|||||.++.
T Consensus 198 l~~r~~~~~p~~l~~pll~gldG~KMSKS~~ns 230 (372)
T 1n3l_A 198 YLPALGYSKRVHLMNPMVPGLTGSKMSSSEEES 230 (372)
T ss_dssp HGGGGTCCCCEEEEECCCCCSSCC-------CC
T ss_pred HHHHcCCCCCEEEecCccCCCCcccccCCCCCC
Confidence 999999988877666654 78899999999863
No 27
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=99.41 E-value=4.2e-13 Score=145.45 Aligned_cols=191 Identities=16% Similarity=0.134 Sum_probs=144.3
Q ss_pred HHHHHHhhhhc-CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec-------CCcccchHHHHHHHHHH
Q 003751 262 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD-------TNPEAEKKEYIDHIEEI 333 (798)
Q Consensus 262 ~~~~~~hl~~~-~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidD-------TDp~Re~~e~~~~I~ed 333 (798)
++-|.+.|+.. .-.+.+.|. |||.|||||+ .++.+|...+..|+.+++.|-| ..+..+..++...|..+
T Consensus 20 ~~~l~~~l~~~~~~~vy~G~~--PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~ 96 (323)
T 2cyb_A 20 EEELRQLIETKEKPRAYVGYE--PSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKV 96 (323)
T ss_dssp HHHHHHHHHSCSCCEEEEEEC--CCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEECcC--CCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHH
Confidence 57778888642 235667775 6799999998 5688999999989999999976 32445678888999999
Q ss_pred HHHcCCCCCc--ccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccC
Q 003751 334 VQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEE 411 (798)
Q Consensus 334 L~wLGl~pd~--i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~ 411 (798)
+.++|++|++ +.+||+.... -++++.+ ..|.|+||..++.... .+- |+.
T Consensus 97 ~~a~Gldp~k~~i~~qS~~~~~-~~~~~~~----~~l~~~~t~~~l~~~~--~~~--------------------~~~-- 147 (323)
T 2cyb_A 97 FIALGLDESRAKFVLGSEYQLS-RDYVLDV----LKMARITTLNRARRSM--DEV--------------------SRR-- 147 (323)
T ss_dssp HHHTTCCTTTCEEEEGGGTTTS-HHHHHHH----HHHHHHSBHHHHHHHT--TTT--------------------CSC--
T ss_pred HHHhCCCccceEEEEcchhccc-hHHHHHH----HHHhCccCHHHHhccc--hhh--------------------ccc--
Confidence 9999999986 6899998532 1333323 3478999999887531 000 000
Q ss_pred CceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHh
Q 003751 412 GKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 491 (798)
Q Consensus 412 g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aL 491 (798)
. ++.-.+..+|.+..+.|+.+.+++|+++|.|...+...+..|.+.+
T Consensus 148 ----------~-----------------------~~~~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~l~rdla~~~ 194 (323)
T 2cyb_A 148 ----------K-----------------------EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRL 194 (323)
T ss_dssp ----------S-----------------------SSCBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGG
T ss_pred ----------c-----------------------CCCCchhhhhHHHHHHHHHhcCCCEEEechhhHHHHHHHHHHHHhc
Confidence 0 0001246788888889999999999999999999999999999999
Q ss_pred CCCCCceeeeeee-cCCCeeeeccccc
Q 003751 492 GLYQPYVWEYSRL-NVSNTVMSKRKLN 517 (798)
Q Consensus 492 g~~~P~~w~f~~L-n~~g~KLSKR~~~ 517 (798)
|...|...+.+++ +.+|+|||||.++
T Consensus 195 ~~~~p~~l~~pll~~l~G~KMSKS~~n 221 (323)
T 2cyb_A 195 GYSSPVCLHTPILVGLDGQKMSSSKGN 221 (323)
T ss_dssp TCCCCEEEEECCCBCTTSSBCCTTTTC
T ss_pred CCCCceEEecCcccCCCCCcccCCcCc
Confidence 9988877777765 7889999999654
No 28
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.39 E-value=2.5e-12 Score=145.59 Aligned_cols=259 Identities=14% Similarity=0.167 Sum_probs=158.3
Q ss_pred CCeeEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCc-ccchHHHHHHHH-HHHH-HcCCCC--Ccc
Q 003751 273 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP-EAEKKEYIDHIE-EIVQ-WMGWEP--FKI 344 (798)
Q Consensus 273 ~g~v~tRF-aPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDTDp-~Re~~e~~~~I~-edL~-wLGl~p--d~i 344 (798)
+.+|+.-| +|+|||+||+||+|++++.+.+|| ...|.=++|.--+|. .+...-...++. .-.+ ++|... .+-
T Consensus 29 ~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p~~ 108 (464)
T 3fnr_A 29 QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPEQ 108 (464)
T ss_dssp SCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCCSS
T ss_pred CCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCchh
Confidence 45799999 899999999999999999999998 566887888877764 344444444442 2245 556542 233
Q ss_pred cCCchhHHHHHHHHHHHHHc-CCccccCCCHHHHHH---------Hhc------cCCC------CCCCCCChHHHHHHHH
Q 003751 345 TYTSDYFQELYELAVELIRR-GHAYVDHQTPEEIKE---------YRE------KKMN------SPWRDRPIAESLKLFE 402 (798)
Q Consensus 345 ~yqSd~~~~~ye~a~~LI~~-G~AY~C~cs~eel~~---------~r~------~~y~------~~~R~~s~ee~l~~f~ 402 (798)
.|+.+| +.+.|+++.++ +..+...-..+.+.+ .+. -.++ +.+. .+++.++.++
T Consensus 109 ~y~g~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess~~~--~~~~vv~~L~ 183 (464)
T 3fnr_A 109 YYKGEY---IVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERSYYD--ALNATLESLK 183 (464)
T ss_dssp CCCSHH---HHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGGGGST--THHHHHHHHH
T ss_pred hcCccH---HHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHHHHHH--HHHHHHHHHH
Confidence 466665 44566666655 544432111111111 111 0111 2222 4554443333
Q ss_pred HhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccc---ccceeeccCCCcceE--ecCccc
Q 003751 403 DMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD---YAHCIVDSIENITHS--LCTLEF 477 (798)
Q Consensus 403 ~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~---fa~~VDD~l~gITHv--iRG~E~ 477 (798)
+ .|...+.+.++.++.+. .+. -.|.|+-|. + |.|||. +|..+++..++++++ |+|.|+
T Consensus 184 ~--~g~~~e~dGa~~~~~~~-~g~--~~~~vl~ks-------D-----G~~~Y~t~DiA~~~~r~~~~~d~~Iyv~G~dq 246 (464)
T 3fnr_A 184 E--HKGIYEQEGKIWLASSQ-KGD--EKDRVIIRE-------D-----GRGTYLAADIVYHKDKMSRGYGKCINIWGADH 246 (464)
T ss_dssp H--TTCEEEETTEEEECGGG-GTC--SSCEEEECT-------T-----SCBCHHHHHHHHHHHHHTSSCSEEEEEEEGGG
T ss_pred H--CCCEEEeCCeEEEEecc-cCC--CCceEEEeC-------C-----CceehhhHHHHHHHHHHHcCCCeEEEEecCcH
Confidence 2 45544444455665432 111 136676654 3 367776 789999999999998 599999
Q ss_pred ccchhhHHHHHHHhCCCCCceee--eeeec--CCCe--eeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHH
Q 003751 478 ETRRASYFWLLHALGLYQPYVWE--YSRLN--VSNT--VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINA 551 (798)
Q Consensus 478 ~~~t~~q~~L~~aLg~~~P~~w~--f~~Ln--~~g~--KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~ 551 (798)
..+.+++..+++++|+..|..-+ |+.++ .+|. |||||+|+ ..++..+.+. +.+.|++-
T Consensus 247 ~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn---------------~v~l~dll~~-~g~dalRy 310 (464)
T 3fnr_A 247 HGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGN---------------FILMSDVVDE-IGSDALRY 310 (464)
T ss_dssp GGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCS---------------SCBHHHHHHH-HCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCC---------------CCCHHHHHhh-ccHHHHHH
Confidence 99999999999999997664322 34443 4775 99999997 3467777765 67888887
Q ss_pred HHHHcCCCCCCccccHhhH
Q 003751 552 FVQGIGISRSDSLIRLDRL 570 (798)
Q Consensus 552 fl~~lG~s~~~~~~~~~~L 570 (798)
|+++... .++..++++.+
T Consensus 311 ~~l~~~~-~~d~~Fd~~~~ 328 (464)
T 3fnr_A 311 IFLSKKC-DTHLEFDISDL 328 (464)
T ss_dssp HTTSSCT-TSCEEEEGGGG
T ss_pred HHHhcCC-CCCCccCHHHH
Confidence 7765432 23334555443
No 29
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.31 E-value=1.9e-11 Score=141.58 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=79.6
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHH
Q 003751 275 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQW 336 (798)
Q Consensus 275 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDTDp~-------------Re~~e~~~~I~edL~w 336 (798)
-++|--.|.|||++||||+|++++.+.+|| .++..|+.-+||.+.+ .....+.+.|.+++++
T Consensus 28 ~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~ 107 (564)
T 3kfl_A 28 FFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQE 107 (564)
T ss_dssp EEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 378888999999999999999999988888 4667788888887632 2356788999999999
Q ss_pred cCCCCCcccCCc--hhHHHHHHHHHHHHHcCCcccc
Q 003751 337 MGWEPFKITYTS--DYFQELYELAVELIRRGHAYVD 370 (798)
Q Consensus 337 LGl~pd~i~yqS--d~~~~~ye~a~~LI~~G~AY~C 370 (798)
||+.+|..++.+ +|.+.+.+..++|.++|++|..
T Consensus 108 lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~ 143 (564)
T 3kfl_A 108 MNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLG 143 (564)
T ss_dssp TTCCCSEEEETTSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred cCCCCCccccCCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence 999999755555 5777888889999999999863
No 30
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.29 E-value=3.7e-12 Score=148.58 Aligned_cols=250 Identities=12% Similarity=0.111 Sum_probs=162.7
Q ss_pred CCeeEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCE---EEEEeec-------------------------CC---
Q 003751 273 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGY---CYLRYDD-------------------------TN--- 318 (798)
Q Consensus 273 ~g~v~tRF-aPsPtG~LHIGharaal~n~l~Ar--~~~G~---~iLRidD-------------------------TD--- 318 (798)
+++|+.=| +|+|+|+|||||+|++++.+.+|| .+.|. .+-.|.| +|
T Consensus 142 ~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l~ 221 (607)
T 1f7u_A 142 NKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLF 221 (607)
T ss_dssp CCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHH
T ss_pred CCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHHH
Confidence 45788888 999999999999999999888887 34444 4444454 11
Q ss_pred --------------------c-----cc-------------------chHHHHHHHHHHHHHcCCCCCcccCCchhH-HH
Q 003751 319 --------------------P-----EA-------------------EKKEYIDHIEEIVQWMGWEPFKITYTSDYF-QE 353 (798)
Q Consensus 319 --------------------p-----~R-------------------e~~e~~~~I~edL~wLGl~pd~i~yqSd~~-~~ 353 (798)
+ .| ....+.+.+.++++.||+..|.....|+|. +.
T Consensus 222 ~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~~~~~~ 301 (607)
T 1f7u_A 222 DVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKES 301 (607)
T ss_dssp HHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCHHH
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcchhhhhH
Confidence 0 11 134567788999999999998777788887 67
Q ss_pred HHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccE
Q 003751 354 LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI 433 (798)
Q Consensus 354 ~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V 433 (798)
+.+..+.|.++|++|... |..+ +.++- .+. ...+.|
T Consensus 302 ~~~vi~~L~~kG~~ye~d----------------------------------------Ga~~--~~~~~-~g~-~~d~~v 337 (607)
T 1f7u_A 302 MLKAIDLFKEKGLTHEDK----------------------------------------GAVL--IDLTK-FNK-KLGKAI 337 (607)
T ss_dssp HHHHHHHHHHTTCEEEET----------------------------------------TEEE--EEGGG-TCT-TTCEEE
T ss_pred HHHHHHHHHhCCCEEEEC----------------------------------------CcEE--EEecc-cCC-CCCcee
Confidence 778889999999999521 1111 11110 000 111234
Q ss_pred EEEEecCCCCCCCCcccccccccccceeecc-CCCcceEe--cCcccccchhhHHHHHHHhCCCCCceeeeeee-cCCCe
Q 003751 434 AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDS-IENITHSL--CTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNT 509 (798)
Q Consensus 434 ~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~-l~gITHvi--RG~E~~~~t~~q~~L~~aLg~~~P~~w~f~~L-n~~g~ 509 (798)
+-|. +|.. .|.|=|+|.+++.+ ..+.+++| .|.++..+-++...+.++||+..+.+|.|..+ .+.
T Consensus 338 ~~Ks-------DG~~--~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~~~~~~~Hv~fg~v~-- 406 (607)
T 1f7u_A 338 VQKS-------DGTT--LYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNFGMVQ-- 406 (607)
T ss_dssp EECT-------TSCC--CHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECCCCEE--
T ss_pred Eecc-------CCCc--CCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCCCcCcEEEEecccccc--
Confidence 4332 2210 13333456666655 35778877 89999999998888899999977767766332 222
Q ss_pred eeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCC---ccccHhhHHH-----HHHHhhhcc
Q 003751 510 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD---SLIRLDRLEY-----HIREELNKT 581 (798)
Q Consensus 510 KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~---~~~~~~~Le~-----~ir~~~~~~ 581 (798)
+||||.|+ ..+|+.|.+.... .| .+ +.. +.++ ..-+.+.+.+ ++|-++...
T Consensus 407 kMSkR~G~---------------~v~L~dLlde~~~-~a-~~-~~~---~~~~~~~~~~e~~~~a~~vgi~avry~~Ls~ 465 (607)
T 1f7u_A 407 GMSTRKGT---------------VVFLDNILEETKE-KM-HE-VMK---KNENKYAQIEHPEEVADLVGISAVMIQDMQG 465 (607)
T ss_dssp SCCGGGTC---------------CCBHHHHHHHHHH-HH-HH-HHH---TCHHHHTTCSCHHHHHHHHHHHHHHHHHHSS
T ss_pred cccCCCCC---------------cccHHHHHHHHHH-HH-HH-HHH---hCcccccchhhHHHHHHHHHHHHHHHHHhcc
Confidence 69999998 4688888887433 44 22 222 1110 0113334443 788999999
Q ss_pred CCcceeEecceeEEEEe
Q 003751 582 APRTMVVLNPLKVVITN 598 (798)
Q Consensus 582 ~~R~~av~dp~kl~i~N 598 (798)
.+|...+||..++...+
T Consensus 466 ~~~s~~~Fd~d~~~~~~ 482 (607)
T 1f7u_A 466 KRINNYEFKWERMLSFE 482 (607)
T ss_dssp CTTCCEECCHHHHHCCS
T ss_pred CCCCCcccCHHHHHHHh
Confidence 99999999998775443
No 31
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.23 E-value=3.1e-11 Score=141.57 Aligned_cols=98 Identities=18% Similarity=0.163 Sum_probs=75.3
Q ss_pred CCeeEEEe-CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecC-----------------------------
Q 003751 273 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDT----------------------------- 317 (798)
Q Consensus 273 ~g~v~tRF-aPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDT----------------------------- 317 (798)
+++|+.=| +|+|||+|||||+|++++.+.+|| .|...++--|+|.
T Consensus 118 ~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~~ 197 (629)
T 2zue_A 118 GKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERG 197 (629)
T ss_dssp TCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhcccc
Confidence 45788888 999999999999999999888887 3334455555664
Q ss_pred --C-cc----------------------------------------cchHHHHHHHHHHHHHcCCCCCcccCCchh--HH
Q 003751 318 --N-PE----------------------------------------AEKKEYIDHIEEIVQWMGWEPFKITYTSDY--FQ 352 (798)
Q Consensus 318 --D-p~----------------------------------------Re~~e~~~~I~edL~wLGl~pd~i~yqSd~--~~ 352 (798)
+ |. .....+.+.+.++++.||+..|.....|++ .+
T Consensus 198 ~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~es~~~~~~ 277 (629)
T 2zue_A 198 LKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVRRK 277 (629)
T ss_dssp SCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSEEEEHHHHHHTT
T ss_pred cccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccccccCcCccccch
Confidence 1 11 113456677889999999999987788887 55
Q ss_pred HHHHHHHHHHHcCCcccc
Q 003751 353 ELYELAVELIRRGHAYVD 370 (798)
Q Consensus 353 ~~ye~a~~LI~~G~AY~C 370 (798)
.+.+..++|.++|.+|.|
T Consensus 278 ~v~~vi~~L~~kG~~y~~ 295 (629)
T 2zue_A 278 LFEIALELLSKNENFYIP 295 (629)
T ss_dssp HHHHHHHHHHTSTTEECC
T ss_pred hHHHHHHHHHHCCCcccc
Confidence 677888999999999964
No 32
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.15 E-value=4.2e-10 Score=129.35 Aligned_cols=94 Identities=16% Similarity=0.119 Sum_probs=73.0
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCc----------------ccchHHHHHHHHHHHHHc
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP----------------EAEKKEYIDHIEEIVQWM 337 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDTDp----------------~Re~~e~~~~I~edL~wL 337 (798)
++|==.|.|||.||||||++.++.+.++| ...|.-++-+.+||. ..-..+|.+.|.+++++|
T Consensus 12 ~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~~l 91 (542)
T 3u1f_A 12 FVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFEQM 91 (542)
T ss_dssp EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 56666799999999999999999999998 345665666666763 122467889999999999
Q ss_pred CCCCCcccCCc--hhHHHHHHHHHHHHHcCCccc
Q 003751 338 GWEPFKITYTS--DYFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 338 Gl~pd~i~yqS--d~~~~~ye~a~~LI~~G~AY~ 369 (798)
|+.+|-.++++ +|.....+...+|.++|++|.
T Consensus 92 gi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 125 (542)
T 3u1f_A 92 DYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYL 125 (542)
T ss_dssp TCCCSEEEETTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCccCcCccCCCHHHHHHHHHHHHHHhhcCcEEe
Confidence 99988654444 465666677789999999885
No 33
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.02 E-value=6e-09 Score=124.07 Aligned_cols=94 Identities=16% Similarity=0.106 Sum_probs=73.0
Q ss_pred eEEEeCCCCCCcCchhHHHH-HHHHHHHHH--H---cCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHH
Q 003751 276 VLTRFPPEPNGYLHIGHAKA-MFVDFGLAK--E---RGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQW 336 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGhara-al~n~l~Ar--~---~~G~~iLRidDTDp~-------------Re~~e~~~~I~edL~w 336 (798)
++|==+|.|||.+||||+++ .++.+.+|| . ++..|+.-+|+...+ .-..++.+.+.+++++
T Consensus 5 ~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~~ 84 (722)
T 1rqg_A 5 MVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQR 84 (722)
T ss_dssp EEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 55666899999999999998 888888888 2 344566666666422 2356788999999999
Q ss_pred cCCCCCcccCCch--hHHHHHHHHHHHHHcCCccc
Q 003751 337 MGWEPFKITYTSD--YFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 337 LGl~pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~ 369 (798)
||+.+|..+++++ |.....+...+|.++|++|.
T Consensus 85 lgis~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~ 119 (722)
T 1rqg_A 85 AKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVK 119 (722)
T ss_dssp HTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 9999997666554 66666777889999999875
No 34
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=98.77 E-value=5.9e-08 Score=106.84 Aligned_cols=193 Identities=13% Similarity=0.064 Sum_probs=130.2
Q ss_pred cHHHHHHhhhhc-CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec----CCc-c-c---chHHHHHHH
Q 003751 261 TKEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----TNP-E-A---EKKEYIDHI 330 (798)
Q Consensus 261 ~~~~~~~hl~~~-~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidD----TDp-~-R---e~~e~~~~I 330 (798)
+++-|++.|+.. .-.+.+-|.| ||.||||| ..++.+|......|..+++.|-| |++ . + ...+....+
T Consensus 22 ~~~~L~~~l~~~~~~~iy~G~~P--Tg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~ 98 (364)
T 2cya_A 22 TEEELKGLLASGARIKGYIGYEP--SGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIV 98 (364)
T ss_dssp THHHHHHHHHHCSCCEEEEEECC--CSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCEEEeccCC--CCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHH
Confidence 467778888653 3357788876 59999999 77788999888889999999999 333 1 2 345666788
Q ss_pred HHHHHHcCCCCCc--ccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCc
Q 003751 331 EEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGR 408 (798)
Q Consensus 331 ~edL~wLGl~pd~--i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~ 408 (798)
..++.++|++|++ +.+||+.... ..+...++. +.|++|..++.... .+ . +
T Consensus 99 ~~~~la~G~dp~k~~i~~qS~~~~~-~~~~~~~~~----l~~~~t~~~l~r~~--~~----k----------------~- 150 (364)
T 2cya_A 99 RRVMEAAGVPVERVRFVDAEELASD-KDYWGLVIR----VAKRASLARVRRAL--TI----M----------------G- 150 (364)
T ss_dssp HHHHHHTTCCGGGCEEEEHHHHHTC-HHHHHHHHH----HHHTSCHHHHHTTC---------------------------
T ss_pred HHHHHHhCCCccceEEEecchhhcc-hHHHHHHHH----HHCcCcHHHHHcCc--hh----h----------------h-
Confidence 8899999999985 7889997643 234444442 57888888776321 00 0 0
Q ss_pred ccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHH
Q 003751 409 IEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLL 488 (798)
Q Consensus 409 ~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~ 488 (798)
|.. +++ + --.+..+|-.--+.|-.+.+.+|++.|.|-..+-....-+.
T Consensus 151 --------r~~----~~~-------------------~-i~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~~l~rdla 198 (364)
T 2cya_A 151 --------RRA----EEA-------------------E-VDASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVA 198 (364)
T ss_dssp ----------C----CGG-------------------G-SCTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHH
T ss_pred --------hhc----CCC-------------------C-ccchhhhhHHHHHhhHHhcCCCEEeccchHHHHHHHHHHHH
Confidence 000 000 0 00112333333334444578999999999999888888889
Q ss_pred HHhCCCCCceeeeeee-cCC-----------------Ceeeecccc
Q 003751 489 HALGLYQPYVWEYSRL-NVS-----------------NTVMSKRKL 516 (798)
Q Consensus 489 ~aLg~~~P~~w~f~~L-n~~-----------------g~KLSKR~~ 516 (798)
+.+|...|...+.+++ +.+ |+|||||..
T Consensus 199 ~r~~~~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~ 244 (364)
T 2cya_A 199 EKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP 244 (364)
T ss_dssp TTTTCCCCEEEEECCCBCSSCC----------------CBCCSSSG
T ss_pred HHcCCCCceeeccceeeCCCcccccccccccccccccccccCCCCC
Confidence 9999888877666654 555 799999953
No 35
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=98.55 E-value=5.1e-07 Score=98.51 Aligned_cols=181 Identities=17% Similarity=0.149 Sum_probs=116.6
Q ss_pred CeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec----C----CcccchHHHHHHHHHHHHHcCCCCC--c
Q 003751 274 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----T----NPEAEKKEYIDHIEEIVQWMGWEPF--K 343 (798)
Q Consensus 274 g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidD----T----Dp~Re~~e~~~~I~edL~wLGl~pd--~ 343 (798)
..|.+.|. |||.|||||...++.+|......|..+++.|.| | ||+ ...+....+..++.++|++|+ .
T Consensus 13 ~~v~~G~~--PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~-~~~~~~~~~~~~~lA~Gldp~k~~ 89 (340)
T 2g36_A 13 MRILSGMR--PTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVS-KLKEYTRDLVRGFLACGIDPEKSV 89 (340)
T ss_dssp CEEEEEEC--CCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCT-THHHHHHHHHHHHHHTTCCTTTSE
T ss_pred CeEEEeeC--CCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHH-HHHHHHHHHHHHHHHhCCChhHeE
Confidence 34555555 568999999998888998888888999999999 6 555 466677777888999999998 4
Q ss_pred ccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCC
Q 003751 344 ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ 423 (798)
Q Consensus 344 i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~ 423 (798)
+.+||+..+ +.+.+- .+.|.++-.++.... + |.+ . .-|++.
T Consensus 90 if~qS~~~~-~~el~~-------~l~~~~~v~~l~r~~-----------~-------~k~----~------~~r~~~--- 130 (340)
T 2g36_A 90 IFVQSGVKE-HAELAL-------LFSMIVSVSRLERVP-----------T-------YKE----I------KSELNY--- 130 (340)
T ss_dssp EEEGGGCTH-HHHHHH-------HHHTTSCHHHHHTCH-----------H-------HHT----C---------------
T ss_pred EEECCchHH-HHHHHH-------HHHccCCHHHHHHhH-----------H-------HHh----H------HHHhcc---
Confidence 789999753 333322 256888887765320 0 000 0 001110
Q ss_pred CCCCCcCccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhC------CCCCc
Q 003751 424 NDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPY 497 (798)
Q Consensus 424 ~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg------~~~P~ 497 (798)
.| +.. .+..+|-.--+.|-.+.+.++++.|.|-..+.....-|.+.++ +..|.
T Consensus 131 ------~~--------------~~~-~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~ 189 (340)
T 2g36_A 131 ------KD--------------LST-AGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEPE 189 (340)
T ss_dssp -------C--------------CCS-HHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCE
T ss_pred ------CC--------------CCC-hHHhhhHHHHHhhHHHhCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCch
Confidence 00 000 1223333333334345789999999999988887777777653 23453
Q ss_pred ee--eeee-ecCCCeeeeccccc
Q 003751 498 VW--EYSR-LNVSNTVMSKRKLN 517 (798)
Q Consensus 498 ~w--~f~~-Ln~~g~KLSKR~~~ 517 (798)
.. +.++ .+.+|+|||||.++
T Consensus 190 ~~~~~~~~l~gldG~KMSKS~~n 212 (340)
T 2g36_A 190 AILSRVPKLPGTDGRKMSKSYGN 212 (340)
T ss_dssp EEECCSCCCCCTTSSCCCGGGTC
T ss_pred hhhccccccCCCCccccCCCCCC
Confidence 21 2344 36789999999876
No 36
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=98.52 E-value=3e-07 Score=99.26 Aligned_cols=111 Identities=18% Similarity=0.234 Sum_probs=83.8
Q ss_pred cHHHHHHhhhhcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec-C---C---cccchHHHHHHHHHH
Q 003751 261 TKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD-T---N---PEAEKKEYIDHIEEI 333 (798)
Q Consensus 261 ~~~~~~~hl~~~~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidD-T---D---p~Re~~e~~~~I~ed 333 (798)
+.+-|++.|+...-.+.+.|.| ||.||||| ..++.+|...+..|..+++.|-| | + ...+..++...|..+
T Consensus 16 ~~~~l~~~L~~~~~~vy~G~~P--Tg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~ 92 (314)
T 2zp1_A 16 SEEELREVLKKDEKSAYIGFEP--SGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKV 92 (314)
T ss_dssp THHHHHHHHTSSSEEEEEEECC--CSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCCEEEEccCC--CCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHH
Confidence 3566788887222357899998 58999999 88889999999889999999954 3 1 234567778899999
Q ss_pred HHHcCCCCCcccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHH
Q 003751 334 VQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEY 380 (798)
Q Consensus 334 L~wLGl~pd~i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~ 380 (798)
+.++|++ ..+.+||+.... ..+...|+ .+.|++|..++...
T Consensus 93 ~~a~G~d-~~~~~qs~~~~~-~~~~~~~~----~l~~~~t~~~l~~~ 133 (314)
T 2zp1_A 93 FEAMGLK-AKYVYGSEFQLD-KDYTLNVY----RLALKTTLKRARRS 133 (314)
T ss_dssp HHHTTCC-CEEEEGGGTTTS-HHHHHHHH----HHHHHSCHHHHHHH
T ss_pred HHhcCCC-eEEEECChhhcc-hHHHHHHH----HHHCcCcHHHHhcc
Confidence 9999998 667789998654 34444444 36788888888764
No 37
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=98.49 E-value=8.9e-08 Score=104.82 Aligned_cols=183 Identities=13% Similarity=0.062 Sum_probs=115.4
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec-------CCcccchHHHHHHHHHHHHHcCCCCC--cccC
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD-------TNPEAEKKEYIDHIEEIVQWMGWEPF--KITY 346 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidD-------TDp~Re~~e~~~~I~edL~wLGl~pd--~i~y 346 (798)
+.+=|- |||.|||||...++.+|..... +..+++.|.| .||+ +..+....+..++.++|++|+ .+.+
T Consensus 7 i~sG~~--PTG~lHLGn~vg~l~~~~~lQ~-~~~~~~~IaD~ha~~~~~d~~-~i~~~~~~~~~~~lA~Gldp~k~~if~ 82 (348)
T 2yy5_A 7 ALTGIQ--ASGKQHLGNYLGVMQSLIELQE-QCQLFVFVADLHSITVDFQPQ-ALKQNNFDLVRTLLAVGLDPQKACLFL 82 (348)
T ss_dssp EEEEEC--CCTTCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHTTCCTTTEEEEE
T ss_pred EEEeeC--CCCcccHHHHHHHHHHHHHHHh-CCcEEEEEcChhhccCCCCHH-HHHHHHHHHHHHHHHhCCChhHeEEEE
Confidence 445555 5699999999988899977766 7899999999 6665 555666777888999999998 5789
Q ss_pred CchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCC
Q 003751 347 TSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDN 426 (798)
Q Consensus 347 qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~ 426 (798)
||+..+ +.++.-.| .|.++..++..... +..... |...+
T Consensus 83 qS~~~~-~~el~w~l-------~~~~~~~~l~R~~~--~k~~~~--------------------------~~~~~----- 121 (348)
T 2yy5_A 83 QSDLLE-HSMMGYLM-------MVQSNLGELQRMTQ--FKAKKA--------------------------EQTRN----- 121 (348)
T ss_dssp GGGCHH-HHHHHHHH-------HHHSBHHHHHHCHH--HHTTC-------------------------------------
T ss_pred CCcccc-hhHHHHHH-------HhhccHHHHhchHH--HHHHHH--------------------------hhccc-----
Confidence 999864 44432222 47777777654311 100000 00000
Q ss_pred CCcCccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhC------CCCCceee
Q 003751 427 FNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWE 500 (798)
Q Consensus 427 ~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg------~~~P~~w~ 500 (798)
+.| . .+ .-.+..+|-.--+.|-.+.+.+|++.|.|-..+.....-|.+.++ +..|...+
T Consensus 122 --~~~--------~----~~-~~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~~l~ 186 (348)
T 2yy5_A 122 --PNG--------T----LN-IPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQFVQ 186 (348)
T ss_dssp -------------------C-CBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEEEC
T ss_pred --ccc--------C----CC-CChhhhhhHHHHHHHHHHhCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCCeeec
Confidence 000 0 00 001223333333334345799999999999988888777777764 44564433
Q ss_pred e---ee-ecCCC--eeeecccccc
Q 003751 501 Y---SR-LNVSN--TVMSKRKLNF 518 (798)
Q Consensus 501 f---~~-Ln~~g--~KLSKR~~~~ 518 (798)
- ++ .+++| +|||||.++.
T Consensus 187 ~~~~~~l~gL~g~~~KMSKS~~n~ 210 (348)
T 2yy5_A 187 NKDTNRIMDLFDPTKKMSKSSKNQ 210 (348)
T ss_dssp CTTTTTCBCSSCTTSBCCSSCSCG
T ss_pred ccccccccCCCCcchhcCCCCCCC
Confidence 1 23 36677 8999999873
No 38
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=98.33 E-value=1e-06 Score=95.74 Aligned_cols=177 Identities=15% Similarity=0.090 Sum_probs=113.1
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec----CCcc--cchHHHHHHHHHHHHHcCCCCC--cccCC
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----TNPE--AEKKEYIDHIEEIVQWMGWEPF--KITYT 347 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidD----TDp~--Re~~e~~~~I~edL~wLGl~pd--~i~yq 347 (798)
+.+=|- |||.|||||...++.+|..... |..+++.|-| |+|. .+..+....+..++-++|++|+ .+.+|
T Consensus 4 vysG~~--PTG~lHlGn~vg~l~~~~~lQ~-g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~q 80 (328)
T 1i6k_A 4 IFSGIQ--PSGVITIGNYIGALRQFVELQH-EYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQ 80 (328)
T ss_dssp EEEEEC--CCSCCBHHHHHHTHHHHHHHTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred EEEeeC--CCCcccHHHHHHHHHHHHHHHc-CCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEec
Confidence 344444 5699999999988899987755 8899999999 7532 2455667778888999999998 47889
Q ss_pred chhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCC
Q 003751 348 SDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNF 427 (798)
Q Consensus 348 Sd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~ 427 (798)
|++.+ +.+.+-.| .|.++-.++.... -|.+... . +
T Consensus 81 S~~~~-~~~l~w~l-------~~~~~~~~l~r~~------------------~~k~~~~-~---~--------------- 115 (328)
T 1i6k_A 81 SEVPA-HAQAAWML-------QCIVYIGELERMT------------------QFKEKSA-G---K--------------- 115 (328)
T ss_dssp GGCTH-HHHHHHHH-------HHHSCHHHHHTCH------------------HHHHHHT-T---C---------------
T ss_pred Cchhh-hhHHHHHH-------hccccHHHHHHHH------------------HHHHHHh-c---c---------------
Confidence 99743 44443322 3666666554221 1111100 0 0
Q ss_pred CcCccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHhC------CCCCceee-
Q 003751 428 NMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWE- 500 (798)
Q Consensus 428 ~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aLg------~~~P~~w~- 500 (798)
| +. -.+..+|-.--+.|-.+.+.++++.|.|-..+.....-|.+.+| +..|....
T Consensus 116 ---~--------------~~-~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~li~ 177 (328)
T 1i6k_A 116 ---E--------------AV-SAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIP 177 (328)
T ss_dssp ---S--------------SC-CHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECC
T ss_pred ---C--------------CC-CchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHHHhCcccccccCCCeeeec
Confidence 0 00 01123333333334345789999999999988888877777765 33453332
Q ss_pred --eee-ecCCC--eeeecccccc
Q 003751 501 --YSR-LNVSN--TVMSKRKLNF 518 (798)
Q Consensus 501 --f~~-Ln~~g--~KLSKR~~~~ 518 (798)
.++ .+.+| +|||||.++.
T Consensus 178 ~~~~~l~gl~G~~~KMSKS~~n~ 200 (328)
T 1i6k_A 178 KVGARIMSLVDPTKKMSKSDPNP 200 (328)
T ss_dssp SSSSSCBCSSCTTSBCCTTCSCG
T ss_pred cccccccCCCCCccCCCCCCCCc
Confidence 123 37788 8999999873
No 39
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=98.30 E-value=9.2e-07 Score=96.91 Aligned_cols=182 Identities=16% Similarity=0.102 Sum_probs=112.9
Q ss_pred CeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC------cccchHHHHHHHHHHHHHcCCCCC--ccc
Q 003751 274 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN------PEAEKKEYIDHIEEIVQWMGWEPF--KIT 345 (798)
Q Consensus 274 g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTD------p~Re~~e~~~~I~edL~wLGl~pd--~i~ 345 (798)
-.+.+.|.| ||.|||||...++.+|...+.....+++.-|++. ...+..+....|..++.++|++|+ .+.
T Consensus 23 ~~vysG~~P--TG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~ 100 (351)
T 1yi8_B 23 PRVLTGDRP--TGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCV 100 (351)
T ss_dssp SEEEEEECC--SSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEEEE
T ss_pred cEEEEeeCC--CCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEE
Confidence 357889987 5999999999888899766554445556555442 122455666778888999999998 478
Q ss_pred CCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCC
Q 003751 346 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQND 425 (798)
Q Consensus 346 yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~ 425 (798)
+||+... +.+++ ..|.|+++-.++... .+..+.+. +.|. .
T Consensus 101 ~qS~~~~-~~el~-------~~l~~~~~v~~l~r~-----------~~~k~~~~-----~~~f-~--------------- 140 (351)
T 1yi8_B 101 VQSAVPE-LAELT-------VYFLNLVTVSHLRQN-----------PTVKAEIA-----QKGY-G--------------- 140 (351)
T ss_dssp EGGGCTH-HHHHH-------HHHHTTSBHHHHHTC-----------HHHHHHHH-----HHTC-T---------------
T ss_pred EcCchhh-HHHHH-------HHHhccCCHHHHHhh-----------hHHHHHHh-----hcCC-C---------------
Confidence 8999754 33321 236789988877531 11111000 0000 0
Q ss_pred CCCcCccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHh----C--CCCCcee
Q 003751 426 NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL----G--LYQPYVW 499 (798)
Q Consensus 426 ~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aL----g--~~~P~~w 499 (798)
.+.. .+..+|-.--+.|-.+.+.++++.|.|-..|.....-|.+.+ | +..|...
T Consensus 141 -------------------~~~~-~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~ 200 (351)
T 1yi8_B 141 -------------------ERVP-AGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQ 200 (351)
T ss_dssp -------------------TCCB-HHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEE
T ss_pred -------------------CCCc-hHhhhhHHHHHhhHHhcCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCCeee
Confidence 0000 122333333333333468999999999999888877777655 3 3455322
Q ss_pred --eeee-ecCCCe-eeeccccc
Q 003751 500 --EYSR-LNVSNT-VMSKRKLN 517 (798)
Q Consensus 500 --~f~~-Ln~~g~-KLSKR~~~ 517 (798)
+.++ .+.+|+ |||||.++
T Consensus 201 ~~~~~~l~~ldG~~KMSKS~~n 222 (351)
T 1yi8_B 201 LSRVPRLPGLDGQAKMSKSLGN 222 (351)
T ss_dssp ECSSCSCCCTTSSSCCCTTTTC
T ss_pred eecCccccCCCCccccCCCCCC
Confidence 2344 367897 99999987
No 40
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=98.28 E-value=3.2e-06 Score=92.18 Aligned_cols=172 Identities=14% Similarity=0.069 Sum_probs=109.7
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcC-CEEEEEeecC----C---cc-cchHHHHHHHHHHHHHcCCCCC--cccCCchhH
Q 003751 283 EPNGYLHIGHAKAMFVDFGLAKERG-GYCYLRYDDT----N---PE-AEKKEYIDHIEEIVQWMGWEPF--KITYTSDYF 351 (798)
Q Consensus 283 sPtG~LHIGharaal~n~l~Ar~~~-G~~iLRidDT----D---p~-Re~~e~~~~I~edL~wLGl~pd--~i~yqSd~~ 351 (798)
.|||.|||||...++.+|......| ..+++.|-|. + +. ....+....+..++.++|++|+ .+.+||+..
T Consensus 9 ~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i~~qS~~~ 88 (337)
T 2el7_A 9 QPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTLFVQSHVP 88 (337)
T ss_dssp CSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEEEEGGGST
T ss_pred CCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEEEEcCcch
Confidence 4669999999998888998777777 6788888883 2 22 2355667778888899999998 478999975
Q ss_pred HHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCcccCCceEEEEEecCCCCCCCcCc
Q 003751 352 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 431 (798)
Q Consensus 352 ~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D 431 (798)
+ +.+++. .+.|+++-.++.... + |.+...+ .|
T Consensus 89 ~-~~el~~-------~l~~~~~~~~l~r~~-----------~-------~k~r~~~----------------------~~ 120 (337)
T 2el7_A 89 E-HTELSW-------VFTTLTPLGDLTRMT-----------Q-------FKDKASK----------------------QE 120 (337)
T ss_dssp H-HHHHHH-------HHHHTSBHHHHHTSH-----------H-------HHHHTTS----------------------SS
T ss_pred h-hHHHHH-------HHHccCCHHHHHHhH-----------H-------HHHHhcc----------------------CC
Confidence 4 444332 256888877765320 0 1110000 00
Q ss_pred cEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhHHHHHHHh----C--CCCCceeee---e
Q 003751 432 LIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL----G--LYQPYVWEY---S 502 (798)
Q Consensus 432 ~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q~~L~~aL----g--~~~P~~w~f---~ 502 (798)
+.. .+..+|-.--+.|-.+.+.++++.|.|-..+.....-|.+.+ | +..|...+- +
T Consensus 121 --------------~~~-~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p 185 (337)
T 2el7_A 121 --------------TVW-SGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEPQALLNPEAP 185 (337)
T ss_dssp --------------CCB-HHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSC
T ss_pred --------------CCC-hHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCCCeeecccccc
Confidence 000 112222222233333478999999999998887777777654 5 455643332 3
Q ss_pred e-ecCCC-eeeeccccc
Q 003751 503 R-LNVSN-TVMSKRKLN 517 (798)
Q Consensus 503 ~-Ln~~g-~KLSKR~~~ 517 (798)
+ .+.+| +|||||.++
T Consensus 186 ~l~gldG~~KMSKS~~n 202 (337)
T 2el7_A 186 RVPGIDGKAKMSKSLGN 202 (337)
T ss_dssp CCBCTTSSSBCCTTTTC
T ss_pred cccCCCCccccCCCCCC
Confidence 4 36789 999999987
No 41
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=97.88 E-value=2.4e-05 Score=95.03 Aligned_cols=94 Identities=23% Similarity=0.271 Sum_probs=70.6
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCE---EEEEeecCCcc-------------cchHHHHHHHHHHHHHc
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGY---CYLRYDDTNPE-------------AEKKEYIDHIEEIVQWM 337 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~---~iLRidDTDp~-------------Re~~e~~~~I~edL~wL 337 (798)
+++=-+|.|||.|||||+|+.++.+.+||. ..|. |+.-+|+...+ ....++.+.|.++++.|
T Consensus 36 ~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~L 115 (878)
T 2v0c_A 36 YVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLM 115 (878)
T ss_dssp EEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 555557999999999999999999988883 3444 44455555422 22467889999999999
Q ss_pred CCCCC--cc--cCCchhHHHHHHHHHHHHHcCCccc
Q 003751 338 GWEPF--KI--TYTSDYFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 338 Gl~pd--~i--~yqSd~~~~~ye~a~~LI~~G~AY~ 369 (798)
|+..| .. +..++|.........+|.++|++|.
T Consensus 116 Gi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~ 151 (878)
T 2v0c_A 116 GILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYR 151 (878)
T ss_dssp TCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 98765 43 4555676677777889999999986
No 42
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=97.83 E-value=3.3e-05 Score=93.67 Aligned_cols=94 Identities=20% Similarity=0.310 Sum_probs=68.7
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEE---eecCCcc-------------cchHHHHHHHHHHHHHc
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLR---YDDTNPE-------------AEKKEYIDHIEEIVQWM 337 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLR---idDTDp~-------------Re~~e~~~~I~edL~wL 337 (798)
+++=-+|.|||.|||||++++++.+.+|| ...|.-+++ +|+...+ .-..++.+.|.++|+.|
T Consensus 56 ~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~L 135 (880)
T 4arc_A 56 YCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKML 135 (880)
T ss_dssp EEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 45555799999999999999999999998 345655554 4444321 12346788899999999
Q ss_pred CCCCC--ccc--CCchhHHHHHHHHHHHHHcCCccc
Q 003751 338 GWEPF--KIT--YTSDYFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 338 Gl~pd--~i~--yqSd~~~~~ye~a~~LI~~G~AY~ 369 (798)
|+..| ..+ ...+|.........+|.++|++|.
T Consensus 136 Gis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~ 171 (880)
T 4arc_A 136 GFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYK 171 (880)
T ss_dssp TCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 98766 443 344555556666779999999886
No 43
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=97.81 E-value=3.6e-05 Score=92.81 Aligned_cols=94 Identities=20% Similarity=0.177 Sum_probs=68.6
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCC---cc------------------------------
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN---PE------------------------------ 320 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDTD---p~------------------------------ 320 (798)
+++--+|.|||.|||||+++.++.+.+|| ...|.-++++--+| .+
T Consensus 37 ~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~ 116 (810)
T 1wkb_A 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL 116 (810)
T ss_dssp EEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHH
T ss_pred EEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHH
Confidence 67888999999999999999999999999 56787777753222 10
Q ss_pred -------cchHHHHHHHHHHHHHcCCCCC--cccCCch----hHHHHHHHHHHHHHcCCccc
Q 003751 321 -------AEKKEYIDHIEEIVQWMGWEPF--KITYTSD----YFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 321 -------Re~~e~~~~I~edL~wLGl~pd--~i~yqSd----~~~~~ye~a~~LI~~G~AY~ 369 (798)
.....+.+.|.+++++||+..| ..++.++ |.........+|.++|++|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~ 178 (810)
T 1wkb_A 117 WTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (810)
T ss_dssp HGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEEE
Confidence 1123455789999999998765 5554444 33334455678999999875
No 44
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=97.56 E-value=0.00057 Score=75.85 Aligned_cols=183 Identities=19% Similarity=0.248 Sum_probs=108.1
Q ss_pred HHHHHhhhhcC-CeeEEEeCCCCCCcCchhHHHHHH-HHHHHHHHcCCEEEEEeecC-----Cc---ccchHHHHHHHHH
Q 003751 263 EVLDKHLEVTG-GNVLTRFPPEPNGYLHIGHAKAMF-VDFGLAKERGGYCYLRYDDT-----NP---EAEKKEYIDHIEE 332 (798)
Q Consensus 263 ~~~~~hl~~~~-g~v~tRFaPsPtG~LHIGharaal-~n~l~Ar~~~G~~iLRidDT-----Dp---~Re~~e~~~~I~e 332 (798)
+.+.+.++..+ -.+.+=|.| ||.|||||...++ .+| +-..+|..+++=|-|. ++ ..+..+....+..
T Consensus 62 ~~l~~~~~~~~p~~i~sG~~P--TG~lHLGh~v~~~~~~~-lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~ 138 (392)
T 3jxe_A 62 DLILKDYEEGRGFFLYTGRGP--SGPMHIGHIIPFFATKW-LQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNIL 138 (392)
T ss_dssp HHHHHHHHTTCCCEEEEEECC--SSCCBHHHHHHHHHHHH-HHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEeccCC--CCchhHHHHHHHHHHHH-HHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHH
Confidence 33434444322 245566665 4999999999885 788 4444677655555553 22 2334555666777
Q ss_pred HHHHcCCCCCc--ccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcCccc
Q 003751 333 IVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIE 410 (798)
Q Consensus 333 dL~wLGl~pd~--i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G~~~ 410 (798)
++.++|++|++ +.+||+... |++.+-.|- |..|-.++...- ++. -..+. -+
T Consensus 139 ~~lA~GlDp~kt~i~~qS~~~~-~~~~~~~l~-------~~~t~~~~~~~~--~~~---~~~~~----g~---------- 191 (392)
T 3jxe_A 139 DIIAVGFDPDKTFIFQNSEFTK-IYEMAIPIA-------KKINFSMAKAVF--GFT---EQSKI----GM---------- 191 (392)
T ss_dssp HHHTTCCCTTSEEEEETTTSTH-HHHHHHHHH-------HHSBHHHHHHHH--CCC---TTSBH----HH----------
T ss_pred HHHHhCcCccceEEEECchhHH-HHHHHHHHH-------hhCCHHHHhhhh--ccC---CCCch----HH----------
Confidence 88889999985 789999876 666666663 455555554321 000 00000 00
Q ss_pred CCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccceeeccCC-CcceEecCcccccchhhHHHHHH
Q 003751 411 EGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIE-NITHSLCTLEFETRRASYFWLLH 489 (798)
Q Consensus 411 ~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~-gITHviRG~E~~~~t~~q~~L~~ 489 (798)
-.||.-+-|..+ +. .-+++..|.|-..+-..-.-|.+
T Consensus 192 ---------------------------------------f~YP~LQaaDil---~~~~a~~vpvG~DQ~~hl~l~Rdla~ 229 (392)
T 3jxe_A 192 ---------------------------------------IFFPAIQIAPTF---FERKRCLIPAAIDQDPYWRLQRDFAE 229 (392)
T ss_dssp ---------------------------------------HHHHHHHHGGGG---SSSSCEEEEEEGGGHHHHHHHHHHTG
T ss_pred ---------------------------------------HHHHHHHHhhHH---hhcCCceeecccchHHHHHHHHHHHH
Confidence 113433333222 22 24678888877655554455667
Q ss_pred HhCCCCCceeeeeee-cCCC--eeeeccccc
Q 003751 490 ALGLYQPYVWEYSRL-NVSN--TVMSKRKLN 517 (798)
Q Consensus 490 aLg~~~P~~w~f~~L-n~~g--~KLSKR~~~ 517 (798)
.+|...|.....+++ ..+| +||||+..+
T Consensus 230 r~n~~~p~~l~~~~l~gLdG~~~KMSKS~~n 260 (392)
T 3jxe_A 230 SLGYYKTAALHSKFVPSLTSLSGKMSASKPE 260 (392)
T ss_dssp GGTSCCCEEEEECCCCCSSCSSSCCCTTSGG
T ss_pred HcCCCCCeeeecccccCCCCCccccccCCCC
Confidence 788878866555553 6677 599999976
No 45
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=97.54 E-value=3e-05 Score=93.59 Aligned_cols=93 Identities=22% Similarity=0.264 Sum_probs=66.5
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCcc---------c------------------------
Q 003751 277 LTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE---------A------------------------ 321 (798)
Q Consensus 277 ~tRFaPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDTDp~---------R------------------------ 321 (798)
++==+|.|||.|||||+++.++.+.+|| ...|.-++++-.+|.- +
T Consensus 42 i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~ 121 (821)
T 1ile_A 42 VYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRE 121 (821)
T ss_dssp BCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHH
T ss_pred EecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHH
Confidence 3444799999999999999999999998 4567666666666520 0
Q ss_pred chHHHHHHHHHHHHHcC--CCCCcccCCch--hHHHHHHHHHHHHHcCCccc
Q 003751 322 EKKEYIDHIEEIVQWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 322 e~~e~~~~I~edL~wLG--l~pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~ 369 (798)
...++.+.+.+++++|| ++|+..+++++ |.........+|.++|++|.
T Consensus 122 ~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 173 (821)
T 1ile_A 122 SVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYR 173 (821)
T ss_dssp HTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeee
Confidence 11246677888999999 78887766655 33333334558999999876
No 46
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=97.53 E-value=0.00021 Score=79.15 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=52.7
Q ss_pred CCCCcCchhHHHHH-HHHHHHHHHcCCEEEEEeecC--------CcccchHHHHHHHHHHHHHcCCCCCc--ccCCchhH
Q 003751 283 EPNGYLHIGHAKAM-FVDFGLAKERGGYCYLRYDDT--------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYF 351 (798)
Q Consensus 283 sPtG~LHIGharaa-l~n~l~Ar~~~G~~iLRidDT--------Dp~Re~~e~~~~I~edL~wLGl~pd~--i~yqSd~~ 351 (798)
.|||.|||||...+ +.+| +-+.+|..+++=|.|. +++ +..+.......++-.+|++|++ +..||++.
T Consensus 90 ~PTG~lHLGh~v~~~~~~~-lQ~~~g~~v~i~I~D~~a~~~r~~~~e-~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~ 167 (386)
T 3hzr_A 90 YPQKEVALEEYITLEFARY-LQDAFNIQVIIQILDDIKVLNREATIN-EASKMSNDLMKYILAFGFNEDKTFIYTDYQYF 167 (386)
T ss_dssp CCCSSCBGGGHHHHHHHHH-HHHHHCCEEEEEECHHHHHHTTSCCHH-HHHHHHHHHHHHHHHTCCCGGGEEEEEHHHHH
T ss_pred CCCCCccHHHHHHHHHHHH-HHHhcCCeEEEEeCchHHhhcCCCCHH-HHHHHHHHHHHHHHHcCCCCcceEEEeccHHH
Confidence 67899999999999 7888 4455677666668773 222 3344455666777888999985 67889887
Q ss_pred HHHHHHHHH
Q 003751 352 QELYELAVE 360 (798)
Q Consensus 352 ~~~ye~a~~ 360 (798)
..++..+.+
T Consensus 168 ~~~~~~~~~ 176 (386)
T 3hzr_A 168 GKMYRTISL 176 (386)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 644444433
No 47
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=97.52 E-value=8.3e-05 Score=80.52 Aligned_cols=87 Identities=18% Similarity=0.182 Sum_probs=59.5
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc-cchHHHHHHHHHHHHHcCCCCCc--ccCCchhHHHH
Q 003751 283 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-AEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQEL 354 (798)
Q Consensus 283 sPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDT-----Dp~-Re~~e~~~~I~edL~wLGl~pd~--i~yqSd~~~~~ 354 (798)
.|||.|||||...++.+|..-.. |..+++-|-|. |+. .+..+....+..++.++|++|++ +.+||+..+ +
T Consensus 11 ~PTg~lHlG~~lg~l~~~~~lQ~-g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~-~ 88 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQMVDAQE-KSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKE-V 88 (322)
T ss_dssp CCSSCCBHHHHHHTHHHHHHTTT-TSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTH-H
T ss_pred CCCccccHHHHHHHHHHHHHHhc-CCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcchh-H
Confidence 57799999999987888765544 66666666653 222 23455666777888889999984 788999753 4
Q ss_pred HHHHHHHHHcCCccccCCCHHHHH
Q 003751 355 YELAVELIRRGHAYVDHQTPEEIK 378 (798)
Q Consensus 355 ye~a~~LI~~G~AY~C~cs~eel~ 378 (798)
.+.+-. +.|+++-.++.
T Consensus 89 ~el~~~-------l~~~~~~~~l~ 105 (322)
T 3tzl_A 89 MELYWI-------LSQFTPMGLLE 105 (322)
T ss_dssp HHHHHH-------HGGGCBHHHHH
T ss_pred HHHHHH-------HhccCcHHHHH
Confidence 443322 35888877665
No 48
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=97.44 E-value=0.00012 Score=89.49 Aligned_cols=94 Identities=20% Similarity=0.187 Sum_probs=67.2
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC----------------c-----c-------cchHH
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------P-----E-------AEKKE 325 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDTD----------------p-----~-------Re~~e 325 (798)
+++==+|.|||.|||||+++.++.+.+||. ..|.-++..--+| | + .-..+
T Consensus 51 ~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~~~ 130 (917)
T 1ffy_A 51 ILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALE 130 (917)
T ss_dssp CEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHH
T ss_pred eeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHHHH
Confidence 455558999999999999999999999983 4565555444443 1 0 11346
Q ss_pred HHHHHHHHHHHcCCC--CCcccCCch--hHHHHHHHHHHHHHcCCccc
Q 003751 326 YIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 326 ~~~~I~edL~wLGl~--pd~i~yqSd--~~~~~ye~a~~LI~~G~AY~ 369 (798)
+.+.+.++++.||+. |+..+++.+ |.........+|.++|++|.
T Consensus 131 ~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr 178 (917)
T 1ffy_A 131 QIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYK 178 (917)
T ss_dssp HHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEe
Confidence 688899999999994 777665554 33333344568999999886
No 49
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=97.43 E-value=0.00025 Score=86.03 Aligned_cols=94 Identities=20% Similarity=0.232 Sum_probs=70.4
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCcc------------------cc-------------
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE------------------AE------------- 322 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDTDp~------------------Re------------- 322 (798)
+++=-+|.|||.|||||+++.++.+.+|| ...|.-++..-.+|.- +.
T Consensus 37 ~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~ 116 (862)
T 1gax_A 37 VIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQ 116 (862)
T ss_dssp EEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHH
T ss_pred EEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHH
Confidence 45556899999999999999999999998 4578777777776621 01
Q ss_pred -hHHHHHHHHHHHHHcCCCCC--cccC--CchhHHHHHHHHHHHHHcCCccc
Q 003751 323 -KKEYIDHIEEIVQWMGWEPF--KITY--TSDYFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 323 -~~e~~~~I~edL~wLGl~pd--~i~y--qSd~~~~~ye~a~~LI~~G~AY~ 369 (798)
..++.+.|.++++.||+..| ..++ ..+|.........+|.++|++|.
T Consensus 117 ~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYr 168 (862)
T 1gax_A 117 WKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYR 168 (862)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 35678899999999998654 4433 33454445556678999999886
No 50
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=97.34 E-value=0.00061 Score=75.64 Aligned_cols=94 Identities=20% Similarity=0.208 Sum_probs=59.9
Q ss_pred HHHHHHhhhhcC-CeeEEEeCCCCC-CcCchhHHHHHH-HHHHHHHHcCCEEEEEeecCC--------cccchHHHHHHH
Q 003751 262 KEVLDKHLEVTG-GNVLTRFPPEPN-GYLHIGHAKAMF-VDFGLAKERGGYCYLRYDDTN--------PEAEKKEYIDHI 330 (798)
Q Consensus 262 ~~~~~~hl~~~~-g~v~tRFaPsPt-G~LHIGharaal-~n~l~Ar~~~G~~iLRidDTD--------p~Re~~e~~~~I 330 (798)
.+.+.++++... -.+.+=| .|| |.|||||...++ .+| +-+.++..+++-|-|-- +..+..++...+
T Consensus 62 ~~~l~~~l~~g~~~~vy~G~--~PTa~~lHlGh~v~~~~~~~-lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~ 138 (393)
T 3hv0_A 62 FEKILDVYEKGELFYLYTGR--GPSSESLHVGHLVPFLFTKY-LQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYEN 138 (393)
T ss_dssp HHHHHHHHHTTCCCEEEEEE--CCSSSSCBSTTHHHHHHHHH-HHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEeCC--CCCCCCccHHHHHHHHHHHH-HHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHH
Confidence 444444554321 2344444 567 689999999988 788 44555666777887731 112344556677
Q ss_pred HHHHHHcCCCCCc--ccCCchhHHHHHHHH
Q 003751 331 EEIVQWMGWEPFK--ITYTSDYFQELYELA 358 (798)
Q Consensus 331 ~edL~wLGl~pd~--i~yqSd~~~~~ye~a 358 (798)
..++..+|++|++ +..||+....|+..+
T Consensus 139 ~~~~lA~GlDp~kt~i~~ns~~~~~~~~~~ 168 (393)
T 3hv0_A 139 MKDIIACGFDPELTFIFTNLEYIAELYPDI 168 (393)
T ss_dssp HHHHHTTCCCTTTEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcceEEEECCHHHHHHHHHH
Confidence 7888889999985 667888876554433
No 51
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=97.33 E-value=0.0013 Score=73.83 Aligned_cols=188 Identities=13% Similarity=0.092 Sum_probs=100.2
Q ss_pred HHHHHHhhhhc-CCeeEEEeCCCCC-CcCchhHHHHHH-HHHHHHHHcCCEEEEEeec----CC-c---ccchHHHHHHH
Q 003751 262 KEVLDKHLEVT-GGNVLTRFPPEPN-GYLHIGHAKAMF-VDFGLAKERGGYCYLRYDD----TN-P---EAEKKEYIDHI 330 (798)
Q Consensus 262 ~~~~~~hl~~~-~g~v~tRFaPsPt-G~LHIGharaal-~n~l~Ar~~~G~~iLRidD----TD-p---~Re~~e~~~~I 330 (798)
.+.+.+.++.. .-.+.+=| -|| |.|||||...++ .+|+ -+.+|...++=|-| +. | .....+....+
T Consensus 90 ~~~l~~~l~~g~~~~vy~G~--dPTag~LHLGh~v~~~~l~~l-Q~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~ 166 (432)
T 2ip1_A 90 FTKILDLYEQGKPFFLYTGR--GPSSDSMHLGHMIPFVFTKWL-QEVFDVPLVIELTDDEKFLFKHKLTINDVKNFAREN 166 (432)
T ss_dssp HHHHHHHHHHTCCCEEEEEE--CCCSSCCBGGGHHHHHHHHHH-HHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEee--cCCCCCccHHHHHHHHHHHHH-HHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHH
Confidence 44444556542 22344444 467 789999999876 6774 33467766666666 32 2 22345556666
Q ss_pred HHHHHHcCCCCCc--ccCCchhH-HHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhcC
Q 003751 331 EEIVQWMGWEPFK--ITYTSDYF-QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNG 407 (798)
Q Consensus 331 ~edL~wLGl~pd~--i~yqSd~~-~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~G 407 (798)
..++-.+|++|++ +..||+.. ..+++.+..+ .+ ..+.++++.. +... ...+.- +
T Consensus 167 ~~~~lA~GlDp~k~~i~~nSd~~~~~~~~~~~~v-~r------m~~~~~~k~r----~~~~-~~~s~g----~------- 223 (432)
T 2ip1_A 167 AKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRV-SR------QITGSTAKAV----FGFN-DSDCIG----K------- 223 (432)
T ss_dssp HHHHHTTTCCGGGEEEEEHHHHCSHHHHHHHHHH-HT------SCCHHHHHHT----TCCC-TTSCHH----H-------
T ss_pred HHHHHHhCCCCCceEEEeCchhhhhhHHHHHHHH-Hh------hhcHHHHHHH----hCCC-CCCchh----h-------
Confidence 7777788999874 77899875 2344444322 10 1122232211 1000 001110 0
Q ss_pred cccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccc---cccccceeeccC-----CCcceEecCccccc
Q 003751 408 RIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYP---SYDYAHCIVDSI-----ENITHSLCTLEFET 479 (798)
Q Consensus 408 ~~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~P---TY~fa~~VDD~l-----~gITHviRG~E~~~ 479 (798)
-.|| +||+-+.-.|.. .+-+++..|.|-..
T Consensus 224 ------------------------------------------f~YPlLQAaDil~l~~d~~~~~~~~~~~lvp~G~DQ~~ 261 (432)
T 2ip1_A 224 ------------------------------------------FHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDP 261 (432)
T ss_dssp ------------------------------------------HHTHHHHHHTTSGGGCTTTTCCCTTCCEEEEEEGGGHH
T ss_pred ------------------------------------------hhHHHHHHHHHHHhccchhhcccCCCceEEEeccCcHH
Confidence 0123 233333212221 34678889988877
Q ss_pred chhhHHHHHHHhCCCCCceeeeeee-cCCC--eeeeccccc
Q 003751 480 RRASYFWLLHALGLYQPYVWEYSRL-NVSN--TVMSKRKLN 517 (798)
Q Consensus 480 ~t~~q~~L~~aLg~~~P~~w~f~~L-n~~g--~KLSKR~~~ 517 (798)
+-..=.-|.+.+|+..|...+.++| ..+| +||||+.++
T Consensus 262 ~i~l~Rdla~r~~~~~p~~l~~~ll~gLdG~~~KMSKS~~n 302 (432)
T 2ip1_A 262 YFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDT 302 (432)
T ss_dssp HHHHHHHHHHHHTSCCCEEEEECCCCCTTC--------CGG
T ss_pred HHHHHHHHHHHhCCCCceeeccccccCCCCCccccCCCCCC
Confidence 7665566678889888866555554 7788 899999877
No 52
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=97.33 E-value=0.00018 Score=80.83 Aligned_cols=191 Identities=19% Similarity=0.168 Sum_probs=106.1
Q ss_pred cHHHHHHhhhhcC-CeeEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc-----------cc
Q 003751 261 TKEVLDKHLEVTG-GNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----------AE 322 (798)
Q Consensus 261 ~~~~~~~hl~~~~-g~v~tRFaPsPtG~-LHIGharaal~n~l~Ar~~~G~~iLRidDT-----Dp~-----------Re 322 (798)
+.+-|.+.|+..+ -.+.+=| -|||. |||||.. ++.++..-...|..+++=|-|. ||. .+
T Consensus 24 ~~~~L~~~L~~~~~~~vy~G~--dPTg~sLHlGh~v-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~ 100 (432)
T 1h3f_A 24 PEEELLAKLKEGRPLTVKLGA--DPTRPDLHLGHAV-VLRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEE 100 (432)
T ss_dssp THHHHHHHHHTCSCCEEEEEE--CTTCCSCBHHHHH-HHHHHHHHHHTTCEEEEEECCCC--------------------
T ss_pred CHHHHHHHHhcCCCcEEEEcc--cCCCCCCchhhHH-HHHHHHHHHHCCCCEEEEEccceEEecCCCCcccccccCCHHH
Confidence 3677888885222 2344444 56775 9999999 6778877777777777777773 442 12
Q ss_pred hHHHHHHHHHHHHHcCCC--CC--cccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHH
Q 003751 323 KKEYIDHIEEIVQWMGWE--PF--KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESL 398 (798)
Q Consensus 323 ~~e~~~~I~edL~wLGl~--pd--~i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l 398 (798)
..+....+...+. .|++ |+ .+.+||+.+..++ ...+++ +.|+.|..++.+. . +
T Consensus 101 i~~n~~~~~~ql~-~~ld~~p~k~~i~~nSd~~~~~~--~~~~l~----l~~~~tv~~ml~~----------~-~----- 157 (432)
T 1h3f_A 101 TRENAKTYVAQAG-KILRQEPHLFELRYNSEWLEGLT--FKEVVR----LTSLMTVAQMLER----------E-D----- 157 (432)
T ss_dssp -HHHHHHHHHHHT-TTSCCCTTTEEEEETHHHHTTCB--HHHHHH----HHTTSBHHHHTTS----------H-H-----
T ss_pred HHHHHHHHHHHHH-HHhcCCCCceEEEECCcccccCc--HHHHHH----HhCcCcHHHHHhh----------h-h-----
Confidence 2333444444443 5777 76 4788998754321 112222 2244454433210 0 0
Q ss_pred HHHH-HhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCccc
Q 003751 399 KLFE-DMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEF 477 (798)
Q Consensus 399 ~~f~-~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~ 477 (798)
|. ++..+ ...+ .+-.+|-.--+.|-...+.++++.|.|-
T Consensus 158 --~k~r~~~~-----------------~~is---------------------~~ef~YPlLQaaDil~l~~~l~~gG~DQ 197 (432)
T 1h3f_A 158 --FKKRYEAG-----------------IPIS---------------------LHELLYPFAQAYDSVAIRADVEMGGTDQ 197 (432)
T ss_dssp --HHHHHHTT-----------------CCCB---------------------GGGGTHHHHHHHHHHHHTCSEEEEEGGG
T ss_pred --HHHHhhcC-----------------CCCC---------------------ccccchhhHHhhhhhhcCccEEEechHH
Confidence 11 01000 0000 0112222222233333468899999999
Q ss_pred ccchhhHHHHHHHhCCCCCceeeeeee-cCCCe-eeeccccc
Q 003751 478 ETRRASYFWLLHALGLYQPYVWEYSRL-NVSNT-VMSKRKLN 517 (798)
Q Consensus 478 ~~~t~~q~~L~~aLg~~~P~~w~f~~L-n~~g~-KLSKR~~~ 517 (798)
..|-..-.-|.+.+|...|.....++| +.+|+ ||||+.++
T Consensus 198 ~~ni~l~rdlarr~~~~~~~~lt~pll~gldG~~KMSKS~~n 239 (432)
T 1h3f_A 198 RFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDN 239 (432)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGTC
T ss_pred HHHHHHHHHHHHHhCCCCceEeecccccCCCCccccCcCCCC
Confidence 888877777888888766655555554 67896 99999976
No 53
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=97.23 E-value=0.00023 Score=87.40 Aligned_cols=94 Identities=22% Similarity=0.181 Sum_probs=64.9
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEee---cCC--------------------------------
Q 003751 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYD---DTN-------------------------------- 318 (798)
Q Consensus 276 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRid---DTD-------------------------------- 318 (798)
+++==+|.|||.|||||+++.++.+.+||. ..|.-+|+.- .+-
T Consensus 37 ~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~ 116 (967)
T 1wz2_A 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL 116 (967)
T ss_dssp BEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHH
T ss_pred EEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHH
Confidence 455568999999999999999999999983 4565555532 221
Q ss_pred -----cccchHHHHHHHHHHHHHcCCC--CCcccCCch----hHHHHHHHHHHHHHcCCccc
Q 003751 319 -----PEAEKKEYIDHIEEIVQWMGWE--PFKITYTSD----YFQELYELAVELIRRGHAYV 369 (798)
Q Consensus 319 -----p~Re~~e~~~~I~edL~wLGl~--pd~i~yqSd----~~~~~ye~a~~LI~~G~AY~ 369 (798)
+..-...|.+.+.++++.||+. |+..+.+.+ |.........+|.++|++|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr 178 (967)
T 1wz2_A 117 WTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (967)
T ss_dssp HGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEE
Confidence 1111234567889999999985 556655555 33333344568889999876
No 54
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=97.14 E-value=0.0045 Score=68.30 Aligned_cols=111 Identities=17% Similarity=0.182 Sum_probs=68.3
Q ss_pred cHHHHHHhhhhc-CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc-cc---hHHHH-HH
Q 003751 261 TKEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-AE---KKEYI-DH 329 (798)
Q Consensus 261 ~~~~~~~hl~~~-~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDT-----Dp~-Re---~~e~~-~~ 329 (798)
+.+.|.++|+.. .-.+.+=|-| ||.|||||-..++.++..-...|..+++=|-|. ||. +. ..+.. ..
T Consensus 20 ~~~~l~~~l~~~~~~~vy~G~~P--Tg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~ 97 (375)
T 2cyc_A 20 TVENLRHLFEIGAPLQHYIGFEI--SGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKY 97 (375)
T ss_dssp THHHHHHHHHHTCCCBEEEEECC--CSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCCcEEEeCCCC--CCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHH
Confidence 367777888653 3346666655 589999994446677777777777777777662 331 11 22333 44
Q ss_pred HH----HHHHHcCCCCCc--ccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHH
Q 003751 330 IE----EIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIK 378 (798)
Q Consensus 330 I~----edL~wLGl~pd~--i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~ 378 (798)
+. .++..+|++|++ +.+||+..... .+...++. +.|+++-.++.
T Consensus 98 ~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~-~~~~~~~~----~~~~~~~~~m~ 147 (375)
T 2cyc_A 98 FKVGMEKSIEVMGGDPKKVEFVLASEILEKG-DYWQTVID----ISKNVTLSRVM 147 (375)
T ss_dssp HHHHHHHHHHHTTCCGGGSEEEETHHHHTBH-HHHHHHHH----HHTTSBHHHHH
T ss_pred HHHHHHHHHHHhCCCccceEEEEcchhhhhh-HHHHHHHH----HhceeEHHHHh
Confidence 44 778899999974 78899875543 22233332 34455555554
No 55
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=97.14 E-value=0.002 Score=71.01 Aligned_cols=117 Identities=16% Similarity=0.246 Sum_probs=72.2
Q ss_pred cccCCCccccccCcHHHHHHhhhhcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC----cc---
Q 003751 248 IPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN----PE--- 320 (798)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~hl~~~~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDTD----p~--- 320 (798)
++|+-++. ..+++..-+-..=.|.+=+. |||.|||||...+.. +......+..+++=|-|.- +.
T Consensus 51 i~f~hRd~------d~il~~~e~gk~~~v~sG~~--PTG~lHLGhyv~~~~-~~~lq~~~~~~~~~IaD~ha~t~~~~~~ 121 (372)
T 3a04_A 51 IIFGHRDF------DKILEAKARGERVAVLTGFM--PSGKFHFGHKLTVDQ-LIYLQKNGFKVFVAIADAEAFAVRRIGR 121 (372)
T ss_dssp SEEEEESH------HHHHHHHHTTCCCEEEEEEC--CCSCCBHHHHHHHHH-HHHHHHTTCEEEEEECHHHHHHTTCCCH
T ss_pred eeeeccCH------HHHHHHHHcCCCCEEEeCcC--CCcHhHHHHHHHHHH-HHHHHhCCCeEEEEEecchhhccCCCCC
Confidence 45555555 55555433222234555554 579999999997654 4444456777777777742 21
Q ss_pred -cchHHHHHHHHHHHHHcCCCCCc--ccCCchhHHHHHHHHHHHHHcCCccccCCCHHHHHHH
Q 003751 321 -AEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEY 380 (798)
Q Consensus 321 -Re~~e~~~~I~edL~wLGl~pd~--i~yqSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~ 380 (798)
.........+..++-++|++|++ +++||++...+++.+..| .|..+..+++..
T Consensus 122 ~e~~r~~~~~~~~~~lA~GlDP~kt~if~qS~~~~~~~~l~~~~-------~~~~~~~~~~~~ 177 (372)
T 3a04_A 122 EEAVRIAVEEYIANMIALGLDPKDTEFYFQTNRGTPYFRLIQLF-------SGKVTAAEMEAI 177 (372)
T ss_dssp HHHHHHHHHTTHHHHHHHTCCTTTCEEEEGGGSCHHHHHHHHHH-------TTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHcchhhhccchHHHHHHHHHH-------HhhhhHHHHhhh
Confidence 11234445556677788999985 789999877777665443 355666666543
No 56
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=97.02 E-value=0.0017 Score=72.43 Aligned_cols=69 Identities=14% Similarity=0.221 Sum_probs=47.8
Q ss_pred CCCC-cCchhHHHHH-HHHHHHHHHcCCEEEEEeecC-----C--cccchHHHHHHHHHHHHHcCCCCCc--ccCCchhH
Q 003751 283 EPNG-YLHIGHAKAM-FVDFGLAKERGGYCYLRYDDT-----N--PEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYF 351 (798)
Q Consensus 283 sPtG-~LHIGharaa-l~n~l~Ar~~~G~~iLRidDT-----D--p~Re~~e~~~~I~edL~wLGl~pd~--i~yqSd~~ 351 (798)
.||| .|||||...+ +.+| +-+.+|..+++-|-|. + +..+..+....+..++-.+|++|++ +..||+..
T Consensus 109 ~PTg~~lHLGh~v~~~~~~~-lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qs~~~ 187 (406)
T 3tze_A 109 GPSSKTMHIGHTIPFLLCKY-MQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVEAS 187 (406)
T ss_dssp CCCSSCCBGGGHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHG
T ss_pred CCCCCcccHHHHHHHHHHHH-HHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEeccHhH
Confidence 6788 7999999988 6788 5555677777777763 1 1223445566777777888999975 55666654
Q ss_pred H
Q 003751 352 Q 352 (798)
Q Consensus 352 ~ 352 (798)
.
T Consensus 188 ~ 188 (406)
T 3tze_A 188 H 188 (406)
T ss_dssp G
T ss_pred H
Confidence 3
No 57
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=96.99 E-value=0.014 Score=65.63 Aligned_cols=221 Identities=12% Similarity=0.086 Sum_probs=117.6
Q ss_pred HHHHHHhhhhcCCeeEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEEeec----C-Cccc----------chHH
Q 003751 262 KEVLDKHLEVTGGNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDD----T-NPEA----------EKKE 325 (798)
Q Consensus 262 ~~~~~~hl~~~~g~v~tRFaPsPtG~-LHIGharaal~n~l~Ar~~~G~~iLRidD----T-Dp~R----------e~~e 325 (798)
.+.|.+.|+...-.+.+=| -|||. |||||+. ++.++..-...|-.++.=|-| | ||.| +..+
T Consensus 21 ~e~L~~~L~~~~~~iy~G~--dPTg~sLHLGhlv-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~ 97 (432)
T 2jan_A 21 LDTLAAEAQRGPMTVYAGF--DPTAPSLHAGHLV-PLLTLRRFQRAGHRPIVLAGGATGMIGDPRDVGERSLNEADTVAE 97 (432)
T ss_dssp HHHHHHHHHHSCCEEEEEE--CCSSSSCBGGGHH-HHHHHHHHHHTTCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEee--CCCCCCcCHHHHH-HHHHHHHHHHCCCcEEEEEcCcEEEccCCcccccccCCCHHHHHH
Confidence 5667777763333444444 56795 9999966 566776666667777666655 2 4532 2233
Q ss_pred HHHHHHHHH-HHc--CCCCCc--ccCCchhHHHH--HHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHH
Q 003751 326 YIDHIEEIV-QWM--GWEPFK--ITYTSDYFQEL--YELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESL 398 (798)
Q Consensus 326 ~~~~I~edL-~wL--Gl~pd~--i~yqSd~~~~~--ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l 398 (798)
....|.+.+ .+| |++|++ +.+||+.+..+ .+++. . +-|+.|-.+|.....
T Consensus 98 n~~~~~~~~~~~La~G~dp~k~~i~~nsdw~~~~~~l~~lr---~----l~~~~tv~~m~~~~~---------------- 154 (432)
T 2jan_A 98 WTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEFLR---D----IGKHFSVNVMLARDT---------------- 154 (432)
T ss_dssp HHHHHHHHHHHHSCCSSSTTCCEEEETHHHHSSCBHHHHHH---H----TGGGCBHHHHHHSHH----------------
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEECchhcccCcHHHHHH---H----HhccCcHHHHhcchH----------------
Confidence 444444432 233 777764 67899875432 22211 1 345666666553210
Q ss_pred HHHHHhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccceeeccCC----CcceEecC
Q 003751 399 KLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIE----NITHSLCT 474 (798)
Q Consensus 399 ~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~----gITHviRG 474 (798)
|.+ |+ . . + |-. .+..+|-.--+.|=... +.++++-|
T Consensus 155 --~k~-------------r~--~--~------~--------------~is-~~ef~YPlLQaaDil~l~~~~~~~i~~gG 194 (432)
T 2jan_A 155 --IRR-------------RL--A--G------E--------------GIS-YTEFSYLLLQANDYVELHRRHGCTLQIGG 194 (432)
T ss_dssp --HHH-------------HT--S--T------T--------------CCB-HHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred --Hhh-------------hh--c--C------C--------------Ccc-hHHHHHHHHHHHHHHHHhccCCCcEEecc
Confidence 110 00 0 0 0 000 01111111111111223 67888889
Q ss_pred cccccchhhHHHHHHHhCCCCCceeeeeee-cCCCeeeeccccccccccCccCCCCCc---chhhHHHHHHCCCChHHHH
Q 003751 475 LEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDP---CLMTLAGLRRRGVTSTSIN 550 (798)
Q Consensus 475 ~E~~~~t~~q~~L~~aLg~~~P~~w~f~~L-n~~g~KLSKR~~~~lv~~g~v~gWdDP---r~~tl~~lrrrG~~PeAI~ 550 (798)
.|-..+-..=.-|.+.++...|.....+.| +.+|+||||+.++..| |=++ -...+....++ .+-..+.
T Consensus 195 ~DQ~~ni~lgrdlarr~~~~~~~~l~~plL~~ldG~KMSKS~~nsaI-------~L~d~~tsp~~i~qki~~-~~D~~v~ 266 (432)
T 2jan_A 195 ADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGGGSL-------WLDPQMTSPYAWYQYFVN-TADADVI 266 (432)
T ss_dssp STTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTBCSSSCBC-------BSSTTTSCHHHHHHHHHT-CCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCccccccccccCCCcCcCCCCCCCCeE-------EccCCCCCHHHHHHHHhc-CCchhHH
Confidence 888777666666677777666654445554 7799999999987323 2233 23455555544 4444466
Q ss_pred HHHHHc
Q 003751 551 AFVQGI 556 (798)
Q Consensus 551 ~fl~~l 556 (798)
+|+..+
T Consensus 267 ~~l~l~ 272 (432)
T 2jan_A 267 RYLRWF 272 (432)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 58
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=96.96 E-value=0.0012 Score=73.31 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=47.0
Q ss_pred CCCC-cCchhHHHHH-HHHHHHHHHcCCEEEEEeecC-------CcccchHHHHHHHHHHHHHcCCCCCc--ccCCchhH
Q 003751 283 EPNG-YLHIGHAKAM-FVDFGLAKERGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYF 351 (798)
Q Consensus 283 sPtG-~LHIGharaa-l~n~l~Ar~~~G~~iLRidDT-------Dp~Re~~e~~~~I~edL~wLGl~pd~--i~yqSd~~ 351 (798)
.||| .|||||...+ +.+| +-+.++..+++-|-|- .+..+..++...+..++-.+|++|++ +..||+..
T Consensus 86 ~PTg~~lHLGh~v~~~~~~~-lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~ 164 (395)
T 3i05_A 86 GPSSESMHMGHLIPFMFTKW-LQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYM 164 (395)
T ss_dssp CCCSSCCBGGGSHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTSEEEEEHHHHT
T ss_pred cCCCccchHHHHHHHHHHHH-HHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCHHH
Confidence 6788 6999999988 6788 4445566666656654 12233455666777888889999985 55666654
Q ss_pred H
Q 003751 352 Q 352 (798)
Q Consensus 352 ~ 352 (798)
.
T Consensus 165 ~ 165 (395)
T 3i05_A 165 G 165 (395)
T ss_dssp T
T ss_pred H
Confidence 3
No 59
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=96.94 E-value=0.0029 Score=69.15 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=60.3
Q ss_pred cHHHHHHhhhhcC-CeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Cc----ccchHHHHHHH
Q 003751 261 TKEVLDKHLEVTG-GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NP----EAEKKEYIDHI 330 (798)
Q Consensus 261 ~~~~~~~hl~~~~-g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDT-----Dp----~Re~~e~~~~I 330 (798)
+.+-|.+.|+..+ -.+.+=|-|| |.|||||...++.++..-...|..++.=|-|. || ..+..+....+
T Consensus 27 ~~~~L~~~L~~~~~~~vy~G~~PT--g~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~ 104 (348)
T 2j5b_A 27 TLDRLKQLVDSGRIFTAYNGFEPS--GRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYF 104 (348)
T ss_dssp CHHHHHHHHHHTCCEEEEEEECCC--SSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCEEEeccCCC--CCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHH
Confidence 3666778887622 2355666554 89999995555667766666677777777662 33 22344566777
Q ss_pred HHHHHHcCCCCCc--ccCCchhH
Q 003751 331 EEIVQWMGWEPFK--ITYTSDYF 351 (798)
Q Consensus 331 ~edL~wLGl~pd~--i~yqSd~~ 351 (798)
..++-.+|++|++ +.+||+.+
T Consensus 105 ~~~~la~Gldp~k~~i~~qs~~~ 127 (348)
T 2j5b_A 105 IEVFKACGINLDGTRFIWASEFI 127 (348)
T ss_dssp HHHHHHTTCCGGGEEEEEHHHHH
T ss_pred HHHHHHhcCCccceEEEECCHhh
Confidence 7788889999974 67888854
No 60
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=96.93 E-value=0.0025 Score=71.77 Aligned_cols=108 Identities=22% Similarity=0.307 Sum_probs=66.7
Q ss_pred HHHHHHhhhhcCCe--eEEEeCCCCC-CcCchhHHHHHH-HHHHHHHHcCCEEEEEeecC-----C---cccchHHHHHH
Q 003751 262 KEVLDKHLEVTGGN--VLTRFPPEPN-GYLHIGHAKAMF-VDFGLAKERGGYCYLRYDDT-----N---PEAEKKEYIDH 329 (798)
Q Consensus 262 ~~~~~~hl~~~~g~--v~tRFaPsPt-G~LHIGharaal-~n~l~Ar~~~G~~iLRidDT-----D---p~Re~~e~~~~ 329 (798)
.+.+.+.++. ++. +.+=| .|| |.|||||...++ .+| +-+.++..+++-|.|- + ...+..+....
T Consensus 79 l~~ll~~l~~-g~p~~vytG~--dPTagsLHLGH~v~~~~l~~-lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~ 154 (451)
T 3foc_A 79 FEEFLSYYEK-GHPIYIYTGR--GPSSGALHLGHLLPFIFTKY-LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRE 154 (451)
T ss_dssp HHHHHHHHHT-TCCEEEEEEE--CCCSSCCBHHHHHHHHHHHH-HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCeEEEecC--CCCCCCccHHHHHHHHHHHH-HHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHH
Confidence 4444454543 332 33444 567 889999999887 788 4455677788888773 1 12234455556
Q ss_pred HHHHHHHcCCCCCc--ccCCchhHH--HHHHHHHHHHHcCCccccCCCHHHHHHH
Q 003751 330 IEEIVQWMGWEPFK--ITYTSDYFQ--ELYELAVELIRRGHAYVDHQTPEEIKEY 380 (798)
Q Consensus 330 I~edL~wLGl~pd~--i~yqSd~~~--~~ye~a~~LI~~G~AY~C~cs~eel~~~ 380 (798)
+..++-.+|++|+. +..||+.+. .|++.+..|- |..|-.++.+.
T Consensus 155 ~~~~~lA~GlDpekt~i~~nSd~~~~~~~~~~l~~L~-------r~~Tv~~m~~~ 202 (451)
T 3foc_A 155 NIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVD-------RMLPISQLRAS 202 (451)
T ss_dssp HHHHHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHHHH-------HTCCHHHHHHH
T ss_pred HHHHHHHcCCCCCceEEEeCchhhcchhHHHHHHHHH-------hhCCHHHHHhh
Confidence 67777778999875 678888753 3455544433 34566666554
No 61
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=96.67 E-value=0.018 Score=63.52 Aligned_cols=89 Identities=16% Similarity=0.111 Sum_probs=53.9
Q ss_pred cHHHHHHhhhhc-CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc-c---chHHHHHHH
Q 003751 261 TKEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-A---EKKEYIDHI 330 (798)
Q Consensus 261 ~~~~~~~hl~~~-~g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDT-----Dp~-R---e~~e~~~~I 330 (798)
+.+.|++.|+.. .-.+.+=|. |||.|||||..-..+++..-...|..+++=|-|. ||. + ........+
T Consensus 43 ~~~~L~~~L~~~~~~~iy~G~~--PTg~lHlG~gvl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~ 120 (373)
T 3vgj_A 43 QPDELRVKLLLKRKLICYDGFE--PSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYF 120 (373)
T ss_dssp CHHHHHHHHHHCSSCEEEEEEC--CCSSCBHHHHHHHHHHHHHHHTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCceEEeCCC--CCCCceehhhHHHHHHHHHHHHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHHH
Confidence 366777777652 224555565 4589999993211122323344566666666552 331 2 233445566
Q ss_pred HHHHHHcCCCCCc--ccCCchhH
Q 003751 331 EEIVQWMGWEPFK--ITYTSDYF 351 (798)
Q Consensus 331 ~edL~wLGl~pd~--i~yqSd~~ 351 (798)
..++..+|++|++ +.+||+..
T Consensus 121 ~~~~~a~G~dp~k~~i~~~S~~~ 143 (373)
T 3vgj_A 121 IEVWKSCGMNMENVQFLWASEEI 143 (373)
T ss_dssp HHHHHHTTCCSTTEEEEEHHHHH
T ss_pred HHHHHHcCCChhheEEEeChhHH
Confidence 7788899999985 67899875
No 62
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=96.53 E-value=0.0039 Score=70.85 Aligned_cols=188 Identities=14% Similarity=0.099 Sum_probs=102.9
Q ss_pred HHHHHHhhhhcCC-eeEEEeCCCCC-CcCchhHHHHHH-HHHHHHHHcCCEEEEEeec-C------CcccchHHHHHHHH
Q 003751 262 KEVLDKHLEVTGG-NVLTRFPPEPN-GYLHIGHAKAMF-VDFGLAKERGGYCYLRYDD-T------NPEAEKKEYIDHIE 331 (798)
Q Consensus 262 ~~~~~~hl~~~~g-~v~tRFaPsPt-G~LHIGharaal-~n~l~Ar~~~G~~iLRidD-T------Dp~Re~~e~~~~I~ 331 (798)
.+.+.+.++.... .+.+=| .|| |.|||||...++ .+|+ -+.+|...++=|-| + -...+..+....+.
T Consensus 143 ~~~l~~~l~~~~~~~vy~G~--dPTag~LHLGh~v~~~~~~~l-Q~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~ 219 (477)
T 1r6t_A 143 MNQVLDAYENKKPFYLYTGR--GPSSEAMHVGHLIPFIFTKWL-QDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENA 219 (477)
T ss_dssp HHHHHHHHHTTCCEEEEEEE--CCCTTCCBGGGHHHHHHHHHH-HHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEEcc--cCCCCCccHHHHHHHHHHHHH-HHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHH
Confidence 4444444543222 344444 567 789999999987 5773 33466654554444 2 12234555666677
Q ss_pred HHHHHcCCCCCc--ccCCchhHH---HHHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHhhc
Q 003751 332 EIVQWMGWEPFK--ITYTSDYFQ---ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRN 406 (798)
Q Consensus 332 edL~wLGl~pd~--i~yqSd~~~---~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m~~ 406 (798)
.++-.+|++|+. +..||++.. .+++.+-.|-. ..+..+++..- ++. ...+. -+|
T Consensus 220 ~~~lA~GlDp~k~~i~~nsd~~~~l~~~~~~~~~l~r-------~~t~~~~k~r~--~~~---~~~s~----gef----- 278 (477)
T 1r6t_A 220 KDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQK-------HVTFNQVKGIF--GFT---DSDCI----GKI----- 278 (477)
T ss_dssp HHHHTTCCCTTSEEEEEHHHHGGGCTTHHHHHHHHHH-------TCBHHHHHHHH--CCC---TTSBH----HHH-----
T ss_pred HHHHHhCCCCCceEEEechhhhcccHHHHHHHHHHHh-------hccHHHHHHHh--CCC---CCCCh----hhh-----
Confidence 777788999985 678888754 24443322211 11222222110 000 00000 000
Q ss_pred CcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccc---cccccceeecc-C----CCcceEecCcccc
Q 003751 407 GRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYP---SYDYAHCIVDS-I----ENITHSLCTLEFE 478 (798)
Q Consensus 407 G~~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~P---TY~fa~~VDD~-l----~gITHviRG~E~~ 478 (798)
.|| +||+-..-.|. + .+-++|.+|.|-.
T Consensus 279 --------------------------------------------~YPlLQAaDil~l~~d~~~g~~~~~~~~VpvG~DQ~ 314 (477)
T 1r6t_A 279 --------------------------------------------SFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQD 314 (477)
T ss_dssp --------------------------------------------HHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGH
T ss_pred --------------------------------------------hhHHHHHHHHHHhccchhhccccCCceeEeccccHH
Confidence 122 23332221121 1 3457788898887
Q ss_pred cchhhHHHHHHHhCCCCCceeeeeee-cCCC--eeeeccccc
Q 003751 479 TRRASYFWLLHALGLYQPYVWEYSRL-NVSN--TVMSKRKLN 517 (798)
Q Consensus 479 ~~t~~q~~L~~aLg~~~P~~w~f~~L-n~~g--~KLSKR~~~ 517 (798)
.+-..-.-|.+.+|...|...+.++| ..+| +||||+.++
T Consensus 315 ~~i~l~Rdla~r~~~~~p~~l~~pll~gLdG~~~KMSKS~~n 356 (477)
T 1r6t_A 315 PYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPN 356 (477)
T ss_dssp HHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTT
T ss_pred HHHHHHHHHHHHhCCCCceeeecccccCCCCCccccCCCCCC
Confidence 77766666778889888866555553 7889 899999877
No 63
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=96.53 E-value=0.013 Score=69.43 Aligned_cols=191 Identities=16% Similarity=0.144 Sum_probs=102.4
Q ss_pred cHHHHHHhhhhcC-CeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc-c---chHHHHHHH
Q 003751 261 TKEVLDKHLEVTG-GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-A---EKKEYIDHI 330 (798)
Q Consensus 261 ~~~~~~~hl~~~~-g~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDT-----Dp~-R---e~~e~~~~I 330 (798)
+.+.|++.|+... -.|.+=| .|||.|||||.....+++..-...|..+++=|-|. ||. + ........+
T Consensus 27 ~~~eL~~~L~~~~~~~vy~G~--~PTg~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~ 104 (690)
T 3p0j_A 27 QESELRNLIEKKPLIRCYDGF--EPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYL 104 (690)
T ss_dssp CHHHHHHHHHHCTTEEEEEEE--CCCSCCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCceEEeee--cCCCcchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHH
Confidence 4677778786532 2355555 46789999993221223333334565666656553 221 1 223444567
Q ss_pred HHHHHHcCCCCCc--ccCCchhHHH----HHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHHHHHHHHHh
Q 003751 331 EEIVQWMGWEPFK--ITYTSDYFQE----LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDM 404 (798)
Q Consensus 331 ~edL~wLGl~pd~--i~yqSd~~~~----~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee~l~~f~~m 404 (798)
..++..+|++|++ +.+||+++.. ++.....+ .+++|-.++... .+.
T Consensus 105 ~~~~lA~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i-------~~~~tv~~m~~~-----------~~~---------- 156 (690)
T 3p0j_A 105 IEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDI-------GRQNTIARIKKC-----------CTI---------- 156 (690)
T ss_dssp HHHHHHTTCCGGGEEEEEHHHHHTTSHHHHHHHHHHH-------HHTSCHHHHHTT-----------C------------
T ss_pred HHHHHHcCCChHHeEEEechHHHHhhHHHHHHHHHHH-------HhhCCHHHHHhh-----------hhh----------
Confidence 7788899999985 7789986543 22322222 123343333311 000
Q ss_pred hcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccceeeccCCCcceEecCcccccchhhH
Q 003751 405 RNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASY 484 (798)
Q Consensus 405 ~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~gITHviRG~E~~~~t~~q 484 (798)
.| |.. .+ + .. +..+|-.--+.|-.+.+.+++..|.|=..+-..=
T Consensus 157 -~~---------r~~----------~~-----i------~~-----g~f~YPlLQAaDil~~~ad~vpvG~DQ~~~l~l~ 200 (690)
T 3p0j_A 157 -MG---------KTE----------GT-----L------TA-----AQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLA 200 (690)
T ss_dssp -------------------------CC-----C------CC-----SCSSHHHHHHHHHHHTTCSEECCBGGGHHHHHHH
T ss_pred -hh---------hcc----------CC-----C------ch-----hhHhhHHHHHHHHHhhCCCEEeccccHHHHHHHH
Confidence 00 100 00 0 00 1233333333333345788999998876665555
Q ss_pred HHHHHHhCCC-CCceeeeeee-cC-CCe-eeeccccc
Q 003751 485 FWLLHALGLY-QPYVWEYSRL-NV-SNT-VMSKRKLN 517 (798)
Q Consensus 485 ~~L~~aLg~~-~P~~w~f~~L-n~-~g~-KLSKR~~~ 517 (798)
.-|.+.+|.. .|...+.+++ .. +|+ ||||+.++
T Consensus 201 Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~ 237 (690)
T 3p0j_A 201 REYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPD 237 (690)
T ss_dssp HHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGG
T ss_pred HHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCC
Confidence 5566778764 5765555554 56 785 99999863
No 64
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=96.49 E-value=0.057 Score=60.43 Aligned_cols=219 Identities=15% Similarity=0.186 Sum_probs=117.8
Q ss_pred cHHHHHHhhhhcCCeeEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc-----c------ch
Q 003751 261 TKEVLDKHLEVTGGNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----A------EK 323 (798)
Q Consensus 261 ~~~~~~~hl~~~~g~v~tRFaPsPtG~-LHIGharaal~n~l~Ar~~~G~~iLRidDT-----Dp~-----R------e~ 323 (798)
.++-|.+.|+...-.+.+=| -|||. |||||.. ++.++..-...|-.++.=|-|- ||. | +.
T Consensus 20 ~~~~L~~~L~~~~~~iy~G~--dPTg~sLHlGh~v-~l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i 96 (420)
T 1jil_A 20 DEQGIEDLLNKEQVTLYCGA--DPTADSLHIGHLL-PFLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQV 96 (420)
T ss_dssp CHHHHHHHHHHSCCEEEEEE--CCSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHH
T ss_pred CHHHHHHHHcCCCCEEEEee--CCCCCCccHHHHH-HHHHHHHHHHCCCcEEEEEcCceeEecCCCccccccccCCHHHH
Confidence 35667788864333444444 56788 9999988 5677776666667766666552 442 1 23
Q ss_pred HHHHHHHHHHHHHcCCCC---Cc--ccCCchhHHH--HHHHHHHHHHcCCccccCCCHHHHHHHhccCCCCCCCCCChHH
Q 003751 324 KEYIDHIEEIVQWMGWEP---FK--ITYTSDYFQE--LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAE 396 (798)
Q Consensus 324 ~e~~~~I~edL~wLGl~p---d~--i~yqSd~~~~--~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~y~~~~R~~s~ee 396 (798)
.+....|...+..+ ++| ++ +..||+.+.. ++++ |.. +-|+.|-.+|... + +...
T Consensus 97 ~~n~~~~~~~~~~~-ld~~~~~k~~i~~ns~w~~~~~~l~~---l~~----~~~~~tv~~m~~~-----~------~~k~ 157 (420)
T 1jil_A 97 DKNIEGISKQMHNI-FEFGTDHGAVLVNNRDWLGQISLISF---LRD----YGKHVGVNYMLGK-----D------SIQS 157 (420)
T ss_dssp HHHHHHHHHHHHHH-SCCSSSSSCEEEETHHHHTTCCHHHH---HHH----TGGGCCHHHHHTC-----G------GGHH
T ss_pred HHHHHHHHHHHHHH-hCCCCCCceEEEEchhhhhhccHHHH---HHH----HhccccHHHHhcc-----h------hhhh
Confidence 45566666665555 666 43 6677776432 2222 222 2344555555421 0 0000
Q ss_pred HHHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccceeeccCC----CcceEe
Q 003751 397 SLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIE----NITHSL 472 (798)
Q Consensus 397 ~l~~f~~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~Ri~~~~h~~~gd~~~g~PTY~fa~~VDD~l~----gITHvi 472 (798)
|+ . ... . .+-.+|-.--+.|=... +.++++
T Consensus 158 --------------------r~--~---~~i--------------------s-~~ef~YplLQaaD~l~l~~~~~~~i~~ 191 (420)
T 1jil_A 158 --------------------RL--E---HGI--------------------S-YTEFTYTILQAIDFGHLNRELNCKIQV 191 (420)
T ss_dssp --------------------HH--T---TTC--------------------C-HHHHHHHHHHHHHHHHHHHHHCEEEEE
T ss_pred --------------------hc--c---CCc--------------------c-hHHHHHHHHHHHHHHHHhccCCCcEEe
Confidence 00 0 000 0 00111111111111123 677788
Q ss_pred cCcccccchhhHHHHHHHh-CCCCCceeeeeee-cCCCeeeeccccccccccCccCCCCCc---chhhHHHHHHCCCChH
Q 003751 473 CTLEFETRRASYFWLLHAL-GLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDP---CLMTLAGLRRRGVTST 547 (798)
Q Consensus 473 RG~E~~~~t~~q~~L~~aL-g~~~P~~w~f~~L-n~~g~KLSKR~~~~lv~~g~v~gWdDP---r~~tl~~lrrrG~~Pe 547 (798)
-|.|=..|-..=.-|.+.+ +...|.....+.| +.+|+||||+.++. | |=++ -...+....++ .+-.
T Consensus 192 gG~DQ~~ni~~grdla~r~~~~~~~~~l~~pll~~ldG~KMSKS~~na-I-------~L~d~~tsp~~i~~ki~~-~~D~ 262 (420)
T 1jil_A 192 GGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGA-V-------WLDAEKTSPYEFYQFWIN-QSDE 262 (420)
T ss_dssp EEGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTSCBTTBCSSSB-C-------BSSTTTSCHHHHHHHHHT-CCHH
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCeeEeecccccCCccccccCCCCCe-E-------ecCCCCCCHHHHHHHHhc-CCch
Confidence 8888776666556667777 7666655455554 77899999999763 2 3233 23455555544 4444
Q ss_pred HHHHHHHHc
Q 003751 548 SINAFVQGI 556 (798)
Q Consensus 548 AI~~fl~~l 556 (798)
.+.+|+..+
T Consensus 263 ~v~~~l~~~ 271 (420)
T 1jil_A 263 DVIKFLKYF 271 (420)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 566777654
No 65
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=96.31 E-value=0.034 Score=63.09 Aligned_cols=159 Identities=18% Similarity=0.243 Sum_probs=116.5
Q ss_pred HHHHHHH-hcCCChhhHHHhhhCHHHHHHHHHHHHHcccCCCCchhhhHHHHH-HHhhCCCCC---------CCchHHHH
Q 003751 11 EILELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT-VATKYPTNA---------LVHRPTLL 79 (798)
Q Consensus 11 ~~~~~f~-~iGl~e~ka~e~~kn~~~~~~l~~~I~~a~~~~~~~~~~g~lly~-la~~~~~~~---------~~~~~~~~ 79 (798)
+..+.|. ..||++.-|.-++.++.++.-+.+++.. +. -++...+.|.+ |...++... ..+...|+
T Consensus 305 ~~~~R~~~eygls~~dA~~L~~~~~~a~~fe~~~~~-~~---~~k~~anw~~~el~~~ln~~~~~i~~~~i~p~~la~li 380 (482)
T 3al0_B 305 EKAERFMREYGLPEYDAKVLTSSKELAEFFEECVKV-VN---RPKDLSNWIMTEVLRELNERNIEITESKLTPQHFADLF 380 (482)
T ss_dssp HHHHHHHHHHSCCHHHHHHHTSSHHHHHHHHHHHHH-SC---CHHHHHHHHHTHHHHHTTTTTCCTTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHh-cC---CHHHHHHHHHHHHHHHHHHcCCCHhhcCCCHHHHHHHH
Confidence 3455565 6899999999999999998888888664 21 25666666655 665555321 34678899
Q ss_pred HHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHH-HHHHHHHHHHHhhHhHHHhhc--cccchhhhH
Q 003751 80 LYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSE-DIELTVNEVFEENKNTILELR--YRTNVGDLF 156 (798)
Q Consensus 80 ~yI~~~~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e-~i~~~v~~~~~~~k~~~~~~R--Y~~n~g~l~ 156 (798)
+.|.+|+|.+. .....+.-+-.. .-+.++.-++.|.. .+|.+ +|++.|+++|++|-+.+.+-| =.-.+|.+|
T Consensus 381 ~li~~g~Is~~-~ak~vl~~~~~~---~~~p~~IIe~~gl~-qiSDe~el~~iV~evIa~np~~v~~~k~Gk~k~~G~lm 455 (482)
T 3al0_B 381 KLMDEGKISIK-IAKEIFPEVFET---GKMPSQIVEEKGLT-QINDEKLIEELVKKAMEQNPKAVQDYKSGKKKAAGFFV 455 (482)
T ss_dssp HHHTTTSSCTT-HHHHSHHHHHHH---CCCHHHHHHHHTCC-CCCCSSCHHHHHHHHHHTCHHHHHHHTTCCTTSTHHHH
T ss_pred HHHHcCCccHH-HHHHHHHHHHhc---CCCHHHHHHHhCCc-cCCcHHHHHHHHHHHHHhChHHHHHHhcCCHHHHHHHH
Confidence 99999999884 445555554443 35789999999976 47877 999999999999998766533 223589999
Q ss_pred HHHHhhCC-CCChhhHHHHHHHH
Q 003751 157 AHVRKRLP-WADPKIVKQLIDAR 178 (798)
Q Consensus 157 ~~~r~~lk-wad~~~~k~~~d~~ 178 (798)
|+|.+..+ =|||+.|.+.|.+.
T Consensus 456 GqVMk~tkGkADp~~V~~llke~ 478 (482)
T 3al0_B 456 GYVMRETKGKANPELTNRIIQKL 478 (482)
T ss_dssp HHHHHTTSSCSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHH
Confidence 99977643 59999888877654
No 66
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Probab=96.25 E-value=0.063 Score=60.91 Aligned_cols=167 Identities=16% Similarity=0.188 Sum_probs=116.4
Q ss_pred hHHHHHH-HhcCCChhhHHHhhhCHHHHHHHHHHHHHcccCCCCchhhhHHHHH-HHhhCCC---------CCCCchHHH
Q 003751 10 SEILELF-LKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT-VATKYPT---------NALVHRPTL 78 (798)
Q Consensus 10 ~~~~~~f-~~iGl~e~ka~e~~kn~~~~~~l~~~I~~a~~~~~~~~~~g~lly~-la~~~~~---------~~~~~~~~~ 78 (798)
++..+.| ...||++.-|.-++.++.++.-+.+++.... -++...+.|.+ |...++. -...+...|
T Consensus 297 ~~k~~R~~~eygLs~~dA~~L~~~~~~a~~Fe~~v~~~~----~~k~~anw~~~el~~~ln~~~~~i~~~~i~p~~la~l 372 (483)
T 3ip4_B 297 DERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGA----DVKLTSNWLMGGVNEYLNKNQVELLDTKLTPENLAGM 372 (483)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHTSSHHHHHHHHHHHTTTC----CHHHHHHHHHTHHHHHHHHTTCCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHcCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHhhCCCCHHhcCCCHHHHHHH
Confidence 3445556 4689999999999999888888887765321 24555555432 3322221 123568899
Q ss_pred HHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhc--cccchhhhH
Q 003751 79 LLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELR--YRTNVGDLF 156 (798)
Q Consensus 79 ~~yI~~~~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~~R--Y~~n~g~l~ 156 (798)
+..|.+|+|.+ .....-+..+-.. .-+.++.-++-|...+=.+++|++.|+++|++|.+.+.+-| =.-.+|-|+
T Consensus 373 i~li~~g~Is~-~~ak~vl~~~~~~---~~~p~~iVee~GL~qisD~~eLe~iV~eVIa~np~~v~~~k~GK~ka~gfLV 448 (483)
T 3ip4_B 373 IKLIEDGTMSS-KIAKKVFPELAAK---GGNAKQIMEDNGLVQISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLV 448 (483)
T ss_dssp HHHHHHTSSCH-HHHHHHHHHHHHH---CCCHHHHHHTTTCCCBCCHHHHHHHHHHHHHHCHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHcCCccH-HHHHHHHHHHHhc---CCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHCHHHHHHHHccCHHHHHHHH
Confidence 99999999976 4555566655443 25788999999988755566999999999999998775322 223477788
Q ss_pred HHHHhh-CCCCChhhHHHHHHHHHHHhcC
Q 003751 157 AHVRKR-LPWADPKIVKQLIDARMYELLG 184 (798)
Q Consensus 157 ~~~r~~-lkwad~~~~k~~~d~~~l~lLg 184 (798)
|+|=+. =-=|||+.|.+.|.+.+..-|.
T Consensus 449 GQVMK~tkGKAdP~~VnelL~e~L~~~~~ 477 (483)
T 3ip4_B 449 GQIMKASKGQANPQLVNQLLKQELDKRLE 477 (483)
T ss_dssp HHHHHHTTSCBCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhHHh
Confidence 777444 3359999999999888766553
No 67
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=96.08 E-value=0.016 Score=65.19 Aligned_cols=88 Identities=14% Similarity=0.062 Sum_probs=54.3
Q ss_pred HHHHHHhhhhcCC-eeEEEeCCCCC-CcCchhHHHHHH-HHHHHHHHcCCEEEEEeec-C------CcccchHHHHHHHH
Q 003751 262 KEVLDKHLEVTGG-NVLTRFPPEPN-GYLHIGHAKAMF-VDFGLAKERGGYCYLRYDD-T------NPEAEKKEYIDHIE 331 (798)
Q Consensus 262 ~~~~~~hl~~~~g-~v~tRFaPsPt-G~LHIGharaal-~n~l~Ar~~~G~~iLRidD-T------Dp~Re~~e~~~~I~ 331 (798)
.+.+.+.++.... .+.+=| -|| |.|||||...++ .+|+ -+.+|...++=|-| | -...+..+....+.
T Consensus 96 ~~~l~~~l~~~~~~~vy~G~--dPTag~LHLGh~v~~~~~~~l-Q~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~ 172 (437)
T 1r6u_A 96 MNQVLDAYENKKPFYLYTGR--GPSSEAMHVGHLIPFIFTKWL-QDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENA 172 (437)
T ss_dssp HHHHHHHHTTTCCEEEEEEE--CCCSSCCBHHHHHHHHHHHHH-HHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEEcc--cCCCCCccHHHHHHHHHHHHH-HHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHH
Confidence 4444444543222 344444 567 789999999887 5664 33367665555554 2 12233555666667
Q ss_pred HHHHHcCCCCCc--ccCCchhHH
Q 003751 332 EIVQWMGWEPFK--ITYTSDYFQ 352 (798)
Q Consensus 332 edL~wLGl~pd~--i~yqSd~~~ 352 (798)
.++-.+|++|++ +..||+...
T Consensus 173 ~~~lA~GlDp~kt~i~~nSd~~~ 195 (437)
T 1r6u_A 173 KDIIACGFDINKTFIFSDLDYMG 195 (437)
T ss_dssp HHHHTTTCCGGGEEEEEHHHHGG
T ss_pred HHHHHhCCCccceEEEechhhhh
Confidence 777788999874 678888754
No 68
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=95.95 E-value=0.17 Score=56.66 Aligned_cols=81 Identities=7% Similarity=0.065 Sum_probs=50.0
Q ss_pred CcceEecCcccccchhhHHHHHHHh-CCCCCceeeeeee-cCCCeeeeccccccccccCccCCCCCc---chhhHHHHHH
Q 003751 467 NITHSLCTLEFETRRASYFWLLHAL-GLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDP---CLMTLAGLRR 541 (798)
Q Consensus 467 gITHviRG~E~~~~t~~q~~L~~aL-g~~~P~~w~f~~L-n~~g~KLSKR~~~~lv~~g~v~gWdDP---r~~tl~~lrr 541 (798)
+.++++-|.|=..|-..=.-|.+.+ +...|.....+.| +.+|+||||+.++. | |=++ -...+.....
T Consensus 185 ~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~~lt~pll~~ldG~KMSKS~~na-I-------~L~d~~tsp~~i~qki~ 256 (419)
T 2ts1_A 185 GCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGT-I-------WLDKEKTSPYEFYQFWI 256 (419)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTSCCTTCCSSCC-C-------BSSTTTSCHHHHHHHHH
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeecccccccCCCcccccCCCCCe-E-------ecCCCCCCHHHHHHHHh
Confidence 6777888887776666556666777 7655654455554 77999999998763 2 3333 2345555554
Q ss_pred CCCChHHHHHHHHHc
Q 003751 542 RGVTSTSINAFVQGI 556 (798)
Q Consensus 542 rG~~PeAI~~fl~~l 556 (798)
+ .+-..+.+|+..+
T Consensus 257 ~-~~D~~v~~~l~l~ 270 (419)
T 2ts1_A 257 N-TDDRDVIRYLKYF 270 (419)
T ss_dssp T-CCHHHHHHHHHHH
T ss_pred c-CCchhHHHHHHHH
Confidence 4 4444566777654
No 69
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=95.91 E-value=0.044 Score=59.21 Aligned_cols=89 Identities=19% Similarity=0.281 Sum_probs=54.1
Q ss_pred CcHHHHHHhhhhcCCeeEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc-----c------c
Q 003751 260 NTKEVLDKHLEVTGGNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----A------E 322 (798)
Q Consensus 260 ~~~~~~~~hl~~~~g~v~tRFaPsPtG~-LHIGharaal~n~l~Ar~~~G~~iLRidDT-----Dp~-----R------e 322 (798)
...+.+.+.++...-.|.+=| .|||. |||||.. ++.++..-...|..++.=|-|. ||. | +
T Consensus 20 ~~~~~l~~~l~~~~~~vy~G~--~PTg~slHlGh~l-~l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~ 96 (322)
T 2yxn_A 20 TDEEALAERLAQGPIALVCGF--DPTADSLHLGHLV-PLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEET 96 (322)
T ss_dssp SSHHHHHHHHHHSCCEEEEEE--CCSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHH
T ss_pred CCHHHHHHHHcCCCCEEEEee--cCCCCcccHHHHH-HHHHHHHHHHcCCcEEEEEccceeeecCCCCcccccccCCHHH
Confidence 336677777773333455555 46799 9999988 5777777777777777766652 331 2 2
Q ss_pred hHHHHHHHHHHHHH---cCCCCCc--ccCCchhH
Q 003751 323 KKEYIDHIEEIVQW---MGWEPFK--ITYTSDYF 351 (798)
Q Consensus 323 ~~e~~~~I~edL~w---LGl~pd~--i~yqSd~~ 351 (798)
..+..+.|.+.+.. +|++|++ +..||+..
T Consensus 97 i~~n~~~~~~~~~~~la~g~dp~k~~i~~qs~w~ 130 (322)
T 2yxn_A 97 VQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWF 130 (322)
T ss_dssp HHHHHHHHHHHHGGGSCSSSGGGCCEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCccceEEEecchhh
Confidence 33344344444332 3777764 66777753
No 70
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=95.49 E-value=0.059 Score=59.00 Aligned_cols=98 Identities=10% Similarity=0.054 Sum_probs=48.9
Q ss_pred CcceEecCcccccchhhHHHHHHHhCCCCCceeeeeee-cCCCeeeeccccccccccCccCCCCCc--chhhHHHHHHCC
Q 003751 467 NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDP--CLMTLAGLRRRG 543 (798)
Q Consensus 467 gITHviRG~E~~~~t~~q~~L~~aLg~~~P~~w~f~~L-n~~g~KLSKR~~~~lv~~g~v~gWdDP--r~~tl~~lrrrG 543 (798)
+.++++.|.|=..+-..=.-|.+.++...|.....++| +.+|+||||+.++. |. -+|. -...+.....+
T Consensus 210 ~~~i~p~G~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~~ldG~KMSKS~~na-I~------L~d~~tsp~~i~~ki~~- 281 (356)
T 2pid_A 210 GCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNA-VW------LNRDKTSPFELYQFFVR- 281 (356)
T ss_dssp CCCEEEEEGGGHHHHHHHHHHHHHHSSCCCEEEEECCCC-------------C-CB------SSTTTSCHHHHHHHHHT-
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcccccCCCCCe-ee------ccCCCCCHHHHHHHHHc-
Confidence 78899999988777766666778888766655555554 67899999998663 21 1220 12455555544
Q ss_pred CChHHHHHHHHHcCCCCCCccccHhhHHHHHHHhh
Q 003751 544 VTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 578 (798)
Q Consensus 544 ~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~ 578 (798)
.+-..+.+|+..+-. ++.+.++++.+.+.
T Consensus 282 ~~D~~v~~~l~~~t~------~~~~~i~~l~~~~~ 310 (356)
T 2pid_A 282 QPDDSVERYLKLFTF------LPLPEIDHIMQLHV 310 (356)
T ss_dssp CCHHHHHHHHHHHCC------CCHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHc------CCchHHHHHHHHHh
Confidence 444456777765421 23345555555554
No 71
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Probab=94.83 E-value=0.069 Score=60.52 Aligned_cols=162 Identities=17% Similarity=0.210 Sum_probs=69.0
Q ss_pred hHHHHHHH-hcCCChhhHHHhhhCHHHHHHHHHHHHHcccCCCCchhhhHHHH-HHHhhCC---------CCCCCchHHH
Q 003751 10 SEILELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLY-TVATKYP---------TNALVHRPTL 78 (798)
Q Consensus 10 ~~~~~~f~-~iGl~e~ka~e~~kn~~~~~~l~~~I~~a~~~~~~~~~~g~lly-~la~~~~---------~~~~~~~~~~ 78 (798)
++..+.|. ..||++.-|.-++.++.++.-+.+++.... -++...+.|. .|...++ +-...+...|
T Consensus 300 ~~~~~R~~~~ygLs~~dA~~L~~~~~~a~~fe~~~~~~~----~~k~~anw~~~el~~~ln~~~~~i~~~~i~p~~la~l 375 (478)
T 3h0l_B 300 DQRFERLIKEYGLSEYEAGILVNHKEVGDFFEEAVRHFK----EPKGIVNWLINDLLGLLRDKGISIEESPVKPEHLAEL 375 (478)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHSHHHHHHHHHHHHHSC----CHHHHHHHHHHTHHHHHHHHTCCGGGCSSCHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHcCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHhCCCCHhhcCCCHHHHHHH
Confidence 34455564 689999999999999999999988886521 2344444433 2221111 1124578899
Q ss_pred HHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhc--cccchhhhH
Q 003751 79 LLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELR--YRTNVGDLF 156 (798)
Q Consensus 79 ~~yI~~~~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~~R--Y~~n~g~l~ 156 (798)
+..|.+|+|.+ .....-+..+-..+ -+.++.-++.|....=.+++|++.|+++|++|.+.+.+-| =.-.+|.||
T Consensus 376 i~li~~g~Is~-~~ak~vl~~~~~~~---~~p~eIVee~gL~qisD~~el~~iV~evI~~np~~v~~~~~Gk~k~~g~lv 451 (478)
T 3h0l_B 376 VKLIKEKVIST-KIGKEVIKEMVETG---KTPSQIVEEKGLKQITDENQIKELVKKIFEKHPKEVERLKQGEEKLIGFFV 451 (478)
T ss_dssp HHHHHTTSSCH-HHHHHHHHHHHHHC---CCHHHHHHHHCC---------------------------------------
T ss_pred HHHHHcCCccH-HHHHHHHHHHHhcC---CCHHHHHHHcCCccCCCHHHHHHHHHHHHHhChHHHHHHHccCHHHHHHHH
Confidence 99999999976 45555666555433 4788999999987644468999999999999887665322 122366677
Q ss_pred HHHHhhC-CCCChhhHHHHHHHHH
Q 003751 157 AHVRKRL-PWADPKIVKQLIDARM 179 (798)
Q Consensus 157 ~~~r~~l-kwad~~~~k~~~d~~~ 179 (798)
|+|-+.. -=|||+.|.+.|.+.+
T Consensus 452 GqVMK~tkGkAdp~~VnelL~e~L 475 (478)
T 3h0l_B 452 GQVMRETRGKANPQVVNKVIRELV 475 (478)
T ss_dssp ------------------------
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHH
Confidence 7664332 2489999888877654
No 72
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=94.79 E-value=0.028 Score=67.83 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=52.2
Q ss_pred ceeeeee-ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHHH
Q 003751 497 YVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 575 (798)
Q Consensus 497 ~~w~f~~-Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir 575 (798)
.+|-+++ ++.+|+|||||+|+ ..++..+.++ |.+.++|-|++..+-...+..++.+.+...++
T Consensus 577 ~v~~hg~vl~~~G~KMSKS~GN---------------vV~p~dli~~-yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~ 640 (821)
T 1ile_A 577 NVICHGLILDEKGQKMSKSKGN---------------VVDPWDIIRK-FGADALRWYIYVSAPPEADRRFGPNLVRETVR 640 (821)
T ss_dssp EEEEECCEECTTSSCCCTTTTC---------------CCCHHHHHTT-TCHHHHHHHHHHHSCSSSCEECCHHHHHHHHH
T ss_pred eEEEEeeEECCCCCCCCccCCC---------------CCCHHHHHHH-hCHHHHHHHHHhCCCCCCCcEecHHHHHHHHH
Confidence 4667776 56799999999998 3467777765 99999999999887555677888888888655
Q ss_pred Hhhh
Q 003751 576 EELN 579 (798)
Q Consensus 576 ~~~~ 579 (798)
.+++
T Consensus 641 ~~~~ 644 (821)
T 1ile_A 641 DYFL 644 (821)
T ss_dssp HTHH
T ss_pred HHHH
Confidence 5554
No 73
>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=94.28 E-value=0.03 Score=65.35 Aligned_cols=163 Identities=18% Similarity=0.245 Sum_probs=32.0
Q ss_pred hHHHHHHH-hcCCChhhHHHhhhCHHHHHHHHHHHHHcccCCCCchhhhHHHHHHHhhCCC------CCCCchHHHHHHH
Q 003751 10 SEILELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPT------NALVHRPTLLLYI 82 (798)
Q Consensus 10 ~~~~~~f~-~iGl~e~ka~e~~kn~~~~~~l~~~I~~a~~~~~~~~~~g~lly~la~~~~~------~~~~~~~~~~~yI 82 (798)
++..+.|. ..||++.-|.-++.++.+ .-+.+++.. +. -+|...+.|...-..++. -...+...|++.|
T Consensus 460 ~~k~~r~~~~ygls~~~A~~l~~~~~~-d~FE~~v~~-~~---~pK~aanWL~~el~~L~~~i~~~~lt~e~la~LI~li 534 (633)
T 1zq1_C 460 QAKVERYVKEYKLDRSLAQTLVDDERD-ELFEELVSM-GV---KPSLAASILVVVLKGLRKEVPIENVTDEHIREAFQLY 534 (633)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHTSTH-HHHHHHHHT-TC---STTHHHHHHHHTTCC----------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHhchHH-HHHHHHHHh-cC---CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 34455565 699999999999999875 555555543 22 245555554433222321 1235667788888
Q ss_pred hcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhh
Q 003751 83 VSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKR 162 (798)
Q Consensus 83 ~~~~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~~RY~~n~g~l~~~~r~~ 162 (798)
.+|+|.. .....-++.+... ...+.++.-++.|.. .+|.++|++.|+++|++|.+.+.+.. .-.+|.+||++.+.
T Consensus 535 ~~gkIs~-~sAkevl~~~~~~--~~~~~~eIIee~gl~-QlSDeELe~iV~eVIaeNp~~V~~gk-~K~mG~lmGqVMK~ 609 (633)
T 1zq1_C 535 LEGKIAK-EAFEEIFKELARN--PSKSAREVAEEKGLT-LLSEEEVTRIIEEVIQQNIEVVKAKG-MGAMGLIMGRVMAK 609 (633)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HcCcccH-HHHHHHHHHHhcc--CCCCHHHHHHHhCcc-cCCHHHHHHHHHHHHHhChHHHhhcC-HhHHHHHHHHHHHH
Confidence 8888876 2333333322221 234556777777864 57899999999999999887655522 23488888888765
Q ss_pred CC-CCChhhHHHHHHHHHHHh
Q 003751 163 LP-WADPKIVKQLIDARMYEL 182 (798)
Q Consensus 163 lk-wad~~~~k~~~d~~~l~l 182 (798)
.+ =|||+.|.+.|.+.+...
T Consensus 610 tkGKADpk~VnelLke~L~~~ 630 (633)
T 1zq1_C 610 VRGKADGKLVSQIVRRKLQEI 630 (633)
T ss_dssp ---------------------
T ss_pred hCCCCCHHHHHHHHHHHHhhh
Confidence 43 599999988887766443
No 74
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=94.23 E-value=0.054 Score=59.97 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=57.3
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC----Cc--ccchHHHHHHHHHHHHHcCCCCCc--ccCCchhHHHH
Q 003751 283 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NP--EAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQEL 354 (798)
Q Consensus 283 sPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDT----Dp--~Re~~e~~~~I~edL~wLGl~pd~--i~yqSd~~~~~ 354 (798)
.|||.|||||...++.+|..-.. +..+++=|-|. ++ .....+....+..++..+|++|++ +++||+..+ +
T Consensus 43 ~PTG~lHLGhyvGal~~~~~LQ~-~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~qS~v~~-~ 120 (388)
T 3prh_A 43 QPSGSVTLGNYIGAMKQFVELQH-DYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQSEVPA-H 120 (388)
T ss_dssp CCCSCCBHHHHHHTHHHHHHTTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGGGSTH-H
T ss_pred CCCCcchHHHHHHHHHHHHHHHc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEecccccc-h
Confidence 56799999999988888865443 56666666663 21 123445556677778889999985 788999743 3
Q ss_pred HHHHHHHHHcCCccccCCCHHHHH
Q 003751 355 YELAVELIRRGHAYVDHQTPEEIK 378 (798)
Q Consensus 355 ye~a~~LI~~G~AY~C~cs~eel~ 378 (798)
.+++-. +.|..+-.++.
T Consensus 121 ~el~w~-------l~~~~~~~~L~ 137 (388)
T 3prh_A 121 AQAGWM-------MQCVAYIGELE 137 (388)
T ss_dssp HHHHHH-------HHTTSCHHHHH
T ss_pred HHHHHH-------HHhhccHHHHH
Confidence 443322 34666665554
No 75
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=93.29 E-value=0.089 Score=57.31 Aligned_cols=93 Identities=18% Similarity=0.114 Sum_probs=58.0
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC----Cc--ccchHHHHHHHHHHHHHcCCCCCc--ccC
Q 003751 275 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NP--EAEKKEYIDHIEEIVQWMGWEPFK--ITY 346 (798)
Q Consensus 275 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDT----Dp--~Re~~e~~~~I~edL~wLGl~pd~--i~y 346 (798)
.|.+=| .|||.|||||...++-+|..-.. +..+++=|-|. ++ ..+..+....+..++..+|++|++ +.+
T Consensus 8 ~v~sG~--~PTG~lHLGhy~g~l~~~~~lQ~-~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~ 84 (341)
T 3sz3_A 8 IVLSGV--QPSGELSIGNYLGALRQWQQMQD-DYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFV 84 (341)
T ss_dssp EEEEEE--CSSSCCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEE
T ss_pred EEEeCc--CCCCcccHHHHHHHHHHHHHHHh-cCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEe
Confidence 455555 46699999999988877753333 34555555553 22 133455666777788889999985 788
Q ss_pred CchhHHHHHHHHHHHHHcCCccccCCCHHHHH
Q 003751 347 TSDYFQELYELAVELIRRGHAYVDHQTPEEIK 378 (798)
Q Consensus 347 qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~ 378 (798)
||+..+ ..+..-. +.|.++.-++.
T Consensus 85 qS~v~~-~~el~~~-------l~~~~~~~~l~ 108 (341)
T 3sz3_A 85 QSHVPE-HAQLGWV-------LNCYTQMGELS 108 (341)
T ss_dssp GGGCTH-HHHHHHH-------HHTTSCHHHHH
T ss_pred ccchhh-hHHHHHH-------HHhhccHHHHH
Confidence 999743 3332222 24666666654
No 76
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=92.56 E-value=0.11 Score=56.79 Aligned_cols=74 Identities=20% Similarity=0.187 Sum_probs=49.6
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-------CcccchHHHHHHHHHHHHHcCCCCCc--cc
Q 003751 275 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--IT 345 (798)
Q Consensus 275 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDT-------Dp~Re~~e~~~~I~edL~wLGl~pd~--i~ 345 (798)
.+.+=| .|||.|||||...++-+|..- +.+..+++=|-|. || ....+....+..++..+|++|++ ++
T Consensus 17 ~i~sG~--~PTG~lHLGh~vg~l~~~~~l-Q~~~~~~~~iaD~hA~t~~~~~-~~~~~~~~~~~~~~lA~GlDp~k~~if 92 (346)
T 3n9i_A 17 IVFSGA--QPSGELTIGNYMGALRQWVQM-QDDYDCIYCIVDLHAITARQDP-ALLRKRTLDTLALYLACGIDPKKSTIF 92 (346)
T ss_dssp EEEEEE--CSCSCCBHHHHHHTHHHHHTT-TTTSEEEEEECHHHHTTSCCCH-HHHHHHHHHHHHHHHHHTCCTTTSEEE
T ss_pred EEEECc--CCCCcccHHHHHHHHHHHHHH-HhhCcEEEEEecceeecCCCCH-HHHHHHHHHHHHHHHHcCCCccceEEE
Confidence 344444 467999999999888788432 2345566655553 23 23445566677778889999985 78
Q ss_pred CCchhHH
Q 003751 346 YTSDYFQ 352 (798)
Q Consensus 346 yqSd~~~ 352 (798)
+||+..+
T Consensus 93 ~qS~v~~ 99 (346)
T 3n9i_A 93 VQSHVPE 99 (346)
T ss_dssp EGGGCTH
T ss_pred ecccccc
Confidence 8998753
No 77
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=92.01 E-value=0.032 Score=64.98 Aligned_cols=159 Identities=21% Similarity=0.263 Sum_probs=26.2
Q ss_pred hHHHHHHH-hcCCChhhHHHhhhCHHHHHHHHHHHHHcccCCCCchhhhHHHHHHHhhCC-------CCCCCchHHHHHH
Q 003751 10 SEILELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYP-------TNALVHRPTLLLY 81 (798)
Q Consensus 10 ~~~~~~f~-~iGl~e~ka~e~~kn~~~~~~l~~~I~~a~~~~~~~~~~g~lly~la~~~~-------~~~~~~~~~~~~y 81 (798)
++..+.|. ..||++.-|.-++.++.+ .-+.+++.. +. -+|...+.|......++ .-...+...|++.
T Consensus 448 ~~k~~r~~~~ygls~~~A~~l~~~~~~-~~fe~~~~~-~~---~~K~aaNWL~~el~~Ln~~~i~i~~lt~e~la~LI~l 522 (619)
T 2d6f_C 448 SEKKERIMRDYGLSEDLASQLVKRNLV-DEFEALTEF-RV---DTTVIASLLAYTLRELRREGHDVDGLGLDELRDAIKL 522 (619)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHTTCT-TTC------------CCHHHHHTTTTHHHHHTC-------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHcCcHH-HHHHHHHHh-cC---CHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHHHHH
Confidence 34456665 689999999999888764 445555433 11 13333333322222222 1223567788899
Q ss_pred HhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHh
Q 003751 82 IVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRK 161 (798)
Q Consensus 82 I~~~~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~~RY~~n~g~l~~~~r~ 161 (798)
|.+|+|... ....-++-+-+ ..-+..+.-++.|.. .+|.++|++.|+++|++|.+.+.+.. .-.+|.+||++.+
T Consensus 523 i~~gkIs~e-sAkevl~~L~e---~e~~~~eIIee~gl~-QlSDeELe~iV~eVIaeNp~~V~~gk-~K~mG~lmGqVMK 596 (619)
T 2d6f_C 523 LEVGKISKD-ALRDIVACMAD---EGLAAEDAARKLNLL-LLAEDEIESIIQEIVEGNLDMISERG-MGAMGPLMGQAMG 596 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHcCchhHH-HHHHHHHHHHh---cCCCHHHHHHHhCcc-cCCHHHHHHHHHHHHHhChHHHhhcC-HhHHHHHHHHHHH
Confidence 998888762 33322222222 234667777777864 47899999999999999887655522 2348888888876
Q ss_pred hCC-CCChhhHHHHHHHHH
Q 003751 162 RLP-WADPKIVKQLIDARM 179 (798)
Q Consensus 162 ~lk-wad~~~~k~~~d~~~ 179 (798)
..+ =|||+.|.+.|.+.+
T Consensus 597 ~tkGKADpk~VnelLke~L 615 (619)
T 2d6f_C 597 RLRGRADGKVVNRILREKI 615 (619)
T ss_dssp -------------------
T ss_pred HhcCCCCHHHHHHHHHHHH
Confidence 544 589998888877654
No 78
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=91.96 E-value=0.029 Score=67.53 Aligned_cols=154 Identities=13% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHhcCCChhhHHHhhhCHHHHHHHHHHHHHcccCCCCchhhhHHH-HHHHhhCC----CCCCCchHHHHHHHhcCCCCC
Q 003751 15 LFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLL-YTVATKYP----TNALVHRPTLLLYIVSSKIKT 89 (798)
Q Consensus 15 ~f~~iGl~e~ka~e~~kn~~~~~~l~~~I~~a~~~~~~~~~~g~ll-y~la~~~~----~~~~~~~~~~~~yI~~~~ikt 89 (798)
.|...||++.-|.-++.++.++.-+.++.. +. -.|...+.| ..|+..++ +-...+...|+..|.+|+|.+
T Consensus 687 R~~eyGLs~~dA~vL~~~~~ladyFE~v~~--~~---~pk~aANWl~~eL~~~Ln~~~~~itp~~LaeLi~LI~~g~IS~ 761 (851)
T 2hz7_A 687 RLLGLGASEGDARTIARDPALLAFVGGAAP--GD---TFAQVASWTVNELVAGLRAGEVKVRAADLAPLAEGVASGQLSA 761 (851)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHcCCCHHHHHHHHCCHHHHHHHHHHHh--cC---CHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCccH
Confidence 367899999999999999888888877742 11 134444433 33343333 223467889999999999987
Q ss_pred HHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeC-HHHHHHHHHHHHHhhHhHHHhhc--cccchhhhHHHHHhh-CCC
Q 003751 90 PAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVS-SEDIELTVNEVFEENKNTILELR--YRTNVGDLFAHVRKR-LPW 165 (798)
Q Consensus 90 ~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt-~e~i~~~v~~~~~~~k~~~~~~R--Y~~n~g~l~~~~r~~-lkw 165 (798)
. .....|.-+-+. .-+.++.-++.|... || +++|+++|+++|++|.+.+.+-| =.-.+|-|+|+|=+. =-=
T Consensus 762 k-~AK~Vl~~m~~~---~~~p~eIVee~GL~q-ISD~~eLe~iV~eVIa~Np~~Ve~yr~GK~ka~gfLVGQVMK~tkGK 836 (851)
T 2hz7_A 762 R-IAREALARAAAS---GDAPLTIIEREGLNA-GLSAEALQQVVAQVIAANPDKAEAYRGGKTALLGFFTGQVMRATAGK 836 (851)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred H-HHHHHHHHHHhc---CCCHHHHHHHcCCCc-CCCHHHHHHHHHHHHHHCHHHHHHHHcccHhHHHHHHHHHHHHhCCC
Confidence 4 555566555432 356788888899875 55 45899999999999988776522 111245555555322 124
Q ss_pred CChhhHHHHHHHH
Q 003751 166 ADPKIVKQLIDAR 178 (798)
Q Consensus 166 ad~~~~k~~~d~~ 178 (798)
|||+.|.+.|.+.
T Consensus 837 AnP~~VnelL~ek 849 (851)
T 2hz7_A 837 ADPQALAAALKDA 849 (851)
T ss_dssp -------------
T ss_pred CCHHHHHHHHHHH
Confidence 8888887776544
No 79
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=91.74 E-value=0.17 Score=62.16 Aligned_cols=63 Identities=14% Similarity=0.054 Sum_probs=47.4
Q ss_pred Ccee-eeeeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHHH
Q 003751 496 PYVW-EYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 574 (798)
Q Consensus 496 P~~w-~f~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~i 574 (798)
|..| ++|++..+|.|||||+|| ..+...+.++ |.+.++|-|++..+....+..++.+.++.+.
T Consensus 635 pk~v~~~G~v~~~G~KMSKS~GN---------------vv~p~d~i~~-yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~ 698 (967)
T 1wz2_A 635 PKGIAVNGFGTLEGQKMSKSKGN---------------VLNFIDAIEE-NGADVVRLYIMSLAEHDSDFDWRRKEVGKLR 698 (967)
T ss_dssp CCCEEEECCEEESSSCCCTTTCC---------------CCBHHHHHHT-TCHHHHHHHHHHHCCTTCCEEECHHHHHHHH
T ss_pred cceEEEeeEEeeCCEEccccccC---------------CCCHHHHHHH-hChHHHHHHHHhCCCCCCCcccCHHHHHHHH
Confidence 4444 468887799999999998 3466777765 9999999999876655566677777666553
No 80
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=90.69 E-value=0.34 Score=58.27 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=47.4
Q ss_pred CCcee-eeeeecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHH
Q 003751 495 QPYVW-EYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 573 (798)
Q Consensus 495 ~P~~w-~f~~Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 573 (798)
.|..| +++++..+|.|||||+|+. .++..+.++ |.+.++|-|++..+-...+..++.+.++.+
T Consensus 634 ~pk~v~~~G~v~~~G~KMSKS~GNv---------------v~p~dli~~-yGaDalR~~ll~~~~~~~d~~fs~~~~~~~ 697 (810)
T 1wkb_A 634 WPKGIAVNGFGTLEGQKMSKSKGNV---------------LNFIDAIEE-NGADVVRLYIMSLAEHDSDFDWRRKEVGKL 697 (810)
T ss_dssp SCCEEEEECCEEETTBCCCTTTTCC---------------CBHHHHHHH-HCHHHHHHHHHHHCCTTCCEEECHHHHHHH
T ss_pred cccEEEEEeEEEeCCeehhhcCCCc---------------CCHHHHHHH-cChHHHHHHHHhcCCCCCCcccCHHHHHHH
Confidence 35555 4688888999999999983 466677765 889999999986665556667777777655
No 81
>1ng6_A Hypothetical protein YQEY; structural genomics, domain GATB/YQEY, PFAM02637, DUF186, PSI, protein structure initiative; 1.40A {Bacillus subtilis} SCOP: a.182.1.1
Probab=90.61 E-value=0.62 Score=44.75 Aligned_cols=61 Identities=18% Similarity=0.338 Sum_probs=45.1
Q ss_pred HHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhhCC-CCChhhHHHHHHHH
Q 003751 112 EFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLP-WADPKIVKQLIDAR 178 (798)
Q Consensus 112 ~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~~RY~~n~g~l~~~~r~~lk-wad~~~~k~~~d~~ 178 (798)
+.-++.|- ..+|.++|++.|+++|++|.+ .+ .-.+|.+||.+.+.++ =|||+.|...|...
T Consensus 85 ~iie~~~~-~qlsd~el~~iV~evi~~~~~----~g-~k~~G~vmG~vmk~~~GkAD~~~v~~lvk~~ 146 (148)
T 1ng6_A 85 DILEVYLP-EQLSEEELRTIVNETIAEVGA----SS-KADMGKVMGAIMPKVKGKADGSLINKLVSSQ 146 (148)
T ss_dssp HHHGGGSC-CCCCHHHHHHHHHHHHHHTTC----CS-GGGHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHhCc-ccCCHHHHHHHHHHHHHHCcc----cC-HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44445554 468999999999999999875 23 3358899998876533 39999998877654
No 82
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=89.85 E-value=0.38 Score=58.81 Aligned_cols=60 Identities=13% Similarity=0.035 Sum_probs=43.7
Q ss_pred ceeeeeeec-CCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHH
Q 003751 497 YVWEYSRLN-VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 573 (798)
Q Consensus 497 ~~w~f~~Ln-~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 573 (798)
.+|.+|++. .+|.|||||+||. .+...+.+. |.+.++|-|++. +-...+..++.+.|++.
T Consensus 581 ~v~~hG~V~d~~G~KMSKSlGNv---------------V~P~dvi~~-yGaDalR~~lls-~~~~~D~~fs~~~l~~~ 641 (917)
T 1ffy_A 581 FLLSHGFVMDGEGKKMSKSLGNV---------------IVPDQVVKQ-KGADIARLWVSS-TDYLADVRISDEILKQT 641 (917)
T ss_dssp EEEEECCEECTTSCCCCSSSSCC---------------CCHHHHHHH-TCHHHHHHHHHT-SCTTSCEECCHHHHHHH
T ss_pred ceeEeeeEEcCCCcCcccccCCc---------------CChHHHHHh-CCHHHHHHHHhc-cCCCCCcccCHHHHHHH
Confidence 356678766 5999999999983 456666664 889999999987 44344556777766553
No 83
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=89.30 E-value=0.4 Score=58.23 Aligned_cols=61 Identities=20% Similarity=0.122 Sum_probs=45.9
Q ss_pred ceeeeee-ecCCCeeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHH
Q 003751 497 YVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 573 (798)
Q Consensus 497 ~~w~f~~-Ln~~g~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 573 (798)
.+|-+++ ++.+|.|||||+|+. .+...+.++ |.+.++|-|++..+....+..++.+.++..
T Consensus 514 ~v~~hG~vld~~G~KMSKSlGNv---------------IdP~dli~~-yGaDalR~~ll~~~~~~~D~~fs~~~l~~~ 575 (862)
T 1gax_A 514 TVLLHGLVLDEKGQKMSKSKGNV---------------IDPLEMVER-YGADALRFALIYLATGGQDIRLDLRWLEMA 575 (862)
T ss_dssp EEEEECCEECTTSCBCCTTTTCC---------------CCHHHHHHH-HCHHHHHHHHHHHCCTTCCEECCHHHHHHH
T ss_pred EEEEeeeEEcCCCCCccccCCCC---------------CCHHHHHHH-cChHHHHHHHHhcCCCCCCCccCHHHHHHH
Confidence 3566666 468999999999983 455666654 889999999998766666667887777664
No 84
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=89.10 E-value=0.79 Score=54.33 Aligned_cols=82 Identities=13% Similarity=0.107 Sum_probs=54.9
Q ss_pred eCCCCCCcCchhHHHHHHH--HHHHHHHcCCEEEEEeecC-----Cc----ccchHHHHHHHHHHHHHcCCCCC-cccCC
Q 003751 280 FPPEPNGYLHIGHAKAMFV--DFGLAKERGGYCYLRYDDT-----NP----EAEKKEYIDHIEEIVQWMGWEPF-KITYT 347 (798)
Q Consensus 280 FaPsPtG~LHIGharaal~--n~l~Ar~~~G~~iLRidDT-----Dp----~Re~~e~~~~I~edL~wLGl~pd-~i~yq 347 (798)
|-| |||.||+||+..++. +-..--..|+..++=|-|. |+ ..+...+......++..+|+++. ++.++
T Consensus 387 ~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d~k~~fv~~ 465 (690)
T 3p0j_A 387 WMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPSSVKIVTE 465 (690)
T ss_dssp ECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCCTTSEEEEH
T ss_pred ecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCeEEEEC
Confidence 778 999999999998765 3222223488888888776 23 12234555666778899999863 57889
Q ss_pred chhHHH----HHHHHHHHH
Q 003751 348 SDYFQE----LYELAVELI 362 (798)
Q Consensus 348 Sd~~~~----~ye~a~~LI 362 (798)
|+.... |+..+.+|-
T Consensus 466 S~~~~~~~~~~~~~vi~la 484 (690)
T 3p0j_A 466 NEVILGNCDDFWVSVIGIA 484 (690)
T ss_dssp HHHHHHTHHHHHHHHHHHH
T ss_pred CchhccchhhHHHHHHHHH
Confidence 985543 444444443
No 85
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=83.28 E-value=1.4 Score=53.74 Aligned_cols=48 Identities=17% Similarity=0.027 Sum_probs=36.6
Q ss_pred eeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHH
Q 003751 510 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 573 (798)
Q Consensus 510 KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 573 (798)
|||||++| ..+...+.++ |.+.++|-|++..+....+..++.+.++.+
T Consensus 639 KMSKSkGN---------------vVdP~diIek-YGADalRl~ll~~~~~~~dl~~s~~~ie~a 686 (880)
T 4arc_A 639 KMSKSKNN---------------GIDPQVMVER-YGADTVRLFMMFASPADMTLEWQESGVEGA 686 (880)
T ss_dssp ECCTTTTC---------------CCCHHHHHHH-HCHHHHHHHHHHSSCTTSCEECCHHHHHHH
T ss_pred cccCcCCC---------------CCCHHHHHHH-cCchHHHHHHHhcCCCCCCcccCHHHHHHH
Confidence 99999998 3466777766 999999999998865555556666666554
No 86
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=74.91 E-value=8.9 Score=42.34 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=35.1
Q ss_pred HHHHHHhhhhcCCeeEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEEeec
Q 003751 262 KEVLDKHLEVTGGNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDD 316 (798)
Q Consensus 262 ~~~~~~hl~~~~g~v~tRFaPsPtG~-LHIGharaal~n~l~Ar~~~G~~iLRidD 316 (798)
.+.|++.++...-.+.+=| .|||. |||||.. ++.++..-...|..++.=|-|
T Consensus 53 ~e~l~~ll~~~~~~vy~G~--dPTg~sLHlGhlv-~l~~l~~lQ~~G~~~~~lIgD 105 (392)
T 1y42_X 53 KEHIAELMRTRRIGAYVGI--DPTAPSLHVGHLL-PLMPLFWMYLEGYKAFTLIGG 105 (392)
T ss_dssp HHHHHHHHHHCCCEEEEEE--CCCSSSCBGGGHH-HHHHHHHHHHHTCEEEEEECT
T ss_pred HHHHHHHHcCCCCEEEEee--cCCCCCccHHHHH-HHHHHHHHHHcCCcEEEEEcC
Confidence 5677777754443455555 46799 9999999 567776666666666665554
No 87
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=74.82 E-value=3.3 Score=50.42 Aligned_cols=49 Identities=12% Similarity=0.021 Sum_probs=37.4
Q ss_pred eeeeccccccccccCccCCCCCcchhhHHHHHHCCCChHHHHHHHHHcCCCCCCccccHhhHHHH
Q 003751 509 TVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 573 (798)
Q Consensus 509 ~KLSKR~~~~lv~~g~v~gWdDPr~~tl~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 573 (798)
.|||||+||. .+...+.++ |.+.++|-|++..+-...+..++.+.++..
T Consensus 636 ~KMSKSkGNv---------------VdP~diI~~-yGADalRl~ll~~~~~~~D~~fs~~~v~~~ 684 (878)
T 2v0c_A 636 AVMSKSKGNG---------------VMVGPFVKE-QGADIARITILFAAPPENEMVWTEEGVQGA 684 (878)
T ss_dssp EECSGGGTCC---------------CBHHHHHHH-SCHHHHHHHHHHHSCTTSCEEECHHHHHHH
T ss_pred HHhhccCCCc---------------ccHHHHHHH-cCccHHHHHHhccCCCCCCceeCHHHHHHH
Confidence 8999999983 456666665 889999999998766556667777766554
No 88
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=61.83 E-value=12 Score=34.96 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=35.6
Q ss_pred CCCChhHHHHHHHhcCCChhhHHHhhhCHHHHHHHHHHHHHcc
Q 003751 5 SKGDKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAA 47 (798)
Q Consensus 5 ~~~~~~~~~~~f~~iGl~e~ka~e~~kn~~~~~~l~~~I~~a~ 47 (798)
...+.+.+.+.+..+||+..+....+.++.+.+.+..-...+.
T Consensus 102 ~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~ 144 (184)
T 4dvc_A 102 PPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQ 144 (184)
T ss_dssp CCSSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3456678889999999999999999999999888877666554
No 89
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=56.01 E-value=38 Score=32.07 Aligned_cols=47 Identities=19% Similarity=0.405 Sum_probs=39.2
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHc-CCCeeeCHHHHHHHHHHH
Q 003751 89 TPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNEV 135 (798)
Q Consensus 89 t~~Ql~aAlkyl~~~~~~~id~~~Fe~~c-GVGv~vt~e~i~~~v~~~ 135 (798)
+..+|..|++.+-....+.|+.++|...+ -+|..+|+++|.+.+..+
T Consensus 82 ~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~~~~~ei~~l~~~~ 129 (176)
T 2lhi_A 82 SEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREV 129 (176)
T ss_dssp HHHHHHHHHHHHCSSCSSSBCHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCcccchHHHHHHHHhh
Confidence 35679999999977777889999999876 468889999999888765
No 90
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=48.43 E-value=29 Score=29.13 Aligned_cols=43 Identities=14% Similarity=0.332 Sum_probs=36.1
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHH
Q 003751 86 KIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEV 135 (798)
Q Consensus 86 ~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~ 135 (798)
...|..||-.|++-+ +.+.+-|+.+++.. .+|+|||+..|+..
T Consensus 5 ~~~~~eel~eAFr~f-~dg~G~It~~eLr~------~lt~eevd~~i~~~ 47 (75)
T 1h8b_A 5 DTDTAEQVIASFRIL-ASDKPYILAEELRR------ELPPDQAQYCIKRM 47 (75)
T ss_dssp CCSTHHHHHHHHHHH-TTSCSSBCHHHHHH------HSCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHH-hcCCCCcCHHHHHh------cCCHHHHHHHHHhc
Confidence 345889999999988 66667799999999 59999999888763
No 91
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Probab=45.32 E-value=66 Score=30.45 Aligned_cols=51 Identities=20% Similarity=0.327 Sum_probs=40.3
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHc-----CCCeeeCHHHHHHHHHHHHHh
Q 003751 88 KTPAQLEAAFSFFASTGSENFEVDEFEEAC-----GVGVEVSSEDIELTVNEVFEE 138 (798)
Q Consensus 88 kt~~Ql~aAlkyl~~~~~~~id~~~Fe~~c-----GVGv~vt~e~i~~~v~~~~~~ 138 (798)
.+...+..+++.+-....+.|+.++|...+ ..|..+|++++++.+..++..
T Consensus 108 ~~~~~l~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~ 163 (207)
T 2ehb_A 108 PVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQ 163 (207)
T ss_dssp CHHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHcccccCHHHHHHHHHHHHHH
Confidence 345678899988876666789999999886 457889999999888876655
No 92
>2p12_A Hypothetical protein DUF402; APC7392, beta-barrel, rhodococcus SP. RHA1, structural genom 2, protein structure initiative; 1.63A {Rhodococcus SP} SCOP: b.175.1.1
Probab=43.61 E-value=30 Score=34.15 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=39.8
Q ss_pred CCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhh---CCCCC
Q 003751 108 FEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKR---LPWAD 167 (798)
Q Consensus 108 id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~~RY~~n~g~l~~~~r~~---lkwad 167 (798)
+|++||++++.-|+ ||+|+.+.|++..-.- .+.|.+.+|. +++=|... |-|++
T Consensus 120 lDeDEL~~A~~~Gl-Is~e~ae~Alr~a~~~-v~~i~~~g~d-----l~~Wl~~~g~~l~w~~ 175 (176)
T 2p12_A 120 LDVDELMEAHTTGL-LDTATAEQAILTATTA-IDGIAAHGHD-----LGRWLASIGMPIDWRG 175 (176)
T ss_dssp ECHHHHHHHHHTTS-SCHHHHHHHHHHHHHH-HHHHHHTTTC-----HHHHHHHTTCCCCCCC
T ss_pred ecHHHHHHHHHcCC-CCHHHHHHHHHHHHHH-HHHHHHccCC-----HHHHHHhCCCcceeCC
Confidence 89999999999998 9999999998876655 3345554443 45555544 89985
No 93
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=40.15 E-value=79 Score=28.44 Aligned_cols=49 Identities=22% Similarity=0.360 Sum_probs=38.7
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHH
Q 003751 87 IKTPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (798)
Q Consensus 87 ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cG-VGv~vt~e~i~~~v~~~ 135 (798)
..+...|..|++.+-....+.|+.++|...+. +|..+|+++|.+.+..+
T Consensus 79 ~~~~~~l~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~ 128 (148)
T 2lmt_A 79 TDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREA 128 (148)
T ss_dssp TTTHHHHHHHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHHh
Confidence 34567899999999877778899999988754 46788999988877653
No 94
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=39.87 E-value=1.3e+02 Score=28.38 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=52.3
Q ss_pred CChhHHHHHHHhcCCChhhHHHhhhCHH-------H-HHHHHHHHHHcccCCCCchhhhHHHHHHHhhCCCCCCCchHHH
Q 003751 7 GDKSEILELFLKIGLDDRTAKNTIANNK-------V-TANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHRPTL 78 (798)
Q Consensus 7 ~~~~~~~~~f~~iGl~e~ka~e~~kn~~-------~-~~~l~~~I~~a~~~~~~~~~~g~lly~la~~~~~~~~~~~~~~ 78 (798)
-+.+++..++..+|+++...+++.+.=. + ...|..++...+.. ......-..++...-.-.........++
T Consensus 16 l~~~el~~~~~~~~~~~~~i~~~f~~~d~~~~~G~i~~~ef~~~l~~~~~~-~~~~~~~~~~f~~~D~d~~G~i~~~Ef~ 94 (207)
T 2d8n_A 16 LSKEILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPD-TDPKAYAQHVFRSFDSNLDGTLDFKEYV 94 (207)
T ss_dssp CCHHHHHHHHHHSSCCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHTCTT-SCCHHHHHHHHHHHCTTCCSEEEHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhccC-CCcHHHHHHHHHHhcCCCCCeEeHHHHH
Confidence 4667888899999999888887654211 1 12233444333321 1111111222222221111112222332
Q ss_pred HHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC
Q 003751 79 LLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACG 118 (798)
Q Consensus 79 ~~yI~~~~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cG 118 (798)
.-.-.-+.-.+...+..+++.+-.+..+.|+.++|...+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~f~~~D~d~~G~I~~~E~~~~l~ 134 (207)
T 2d8n_A 95 IALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVM 134 (207)
T ss_dssp HHHHHHSCSSSSTTHHHHHHHHCTTCSSEECHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHhcCCCCCeEcHHHHHHHHH
Confidence 2222222223455677777766544445567776666553
No 95
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=38.98 E-value=70 Score=35.83 Aligned_cols=47 Identities=17% Similarity=0.427 Sum_probs=35.9
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHH
Q 003751 89 TPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (798)
Q Consensus 89 t~~Ql~aAlkyl~~~~~~~id~~~Fe~~cG-VGv~vt~e~i~~~v~~~ 135 (798)
+..+|..|++.+-....+.|+.++|.+.+- +|..+|+++|++.++.+
T Consensus 373 ~eeeLreAFk~fDkDgdG~IS~eELr~vL~~lGe~LSdeEIdeLfke~ 420 (440)
T 3u0k_A 373 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 420 (440)
T ss_dssp -CHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 457888999988766667899999987653 46788999988777654
No 96
>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A
Probab=36.70 E-value=2.4e+02 Score=27.19 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=41.2
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHc-----CCCeeeCHHHHHHHHHHHHHh
Q 003751 88 KTPAQLEAAFSFFASTGSENFEVDEFEEAC-----GVGVEVSSEDIELTVNEVFEE 138 (798)
Q Consensus 88 kt~~Ql~aAlkyl~~~~~~~id~~~Fe~~c-----GVGv~vt~e~i~~~v~~~~~~ 138 (798)
.+...+..|++.+-.+..+.|+.++|...+ ..|..+|++++++.+..++..
T Consensus 119 ~~~~~l~~~F~~~D~d~~G~Is~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~ 174 (226)
T 2zfd_A 119 PIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEE 174 (226)
T ss_dssp CHHHHHHHHHHHHCTTSSSSEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 345678899988876666789999999987 578889999999888876654
No 97
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=35.63 E-value=1e+02 Score=30.09 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=19.0
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHc
Q 003751 89 TPAQLEAAFSFFASTGSENFEVDEFEEAC 117 (798)
Q Consensus 89 t~~Ql~aAlkyl~~~~~~~id~~~Fe~~c 117 (798)
+..++..+++.+-.+..+.|+.++|...+
T Consensus 123 ~~~~l~~~F~~~D~d~dG~Is~~E~~~~l 151 (224)
T 1s1e_A 123 VHEKLRWTFNLYDINKDGYINKEEMMDIV 151 (224)
T ss_dssp HHHHHHHHHHHHCTTCCSEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCeECHHHHHHHH
Confidence 45667777776655555567777777665
No 98
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=34.69 E-value=36 Score=31.58 Aligned_cols=48 Identities=29% Similarity=0.374 Sum_probs=40.5
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHH
Q 003751 87 IKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEV 135 (798)
Q Consensus 87 ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~ 135 (798)
..+...+..+++.+-.+..+.|+.++|...+. |..+|++++.+.+..+
T Consensus 119 ~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~-~~~~~~~~~~~~~~~~ 166 (191)
T 3khe_A 119 LLSRERLLAAFQQFDSDGSGKITNEELGRLFG-VTEVDDETWHQVLQEC 166 (191)
T ss_dssp HCCHHHHHHHHHHHCTTCSSEECHHHHHHHTT-SSCCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCcCcCCHHHHHHHHc-cCCCCHHHHHHHHHHh
Confidence 35667889999988766667899999999999 9999999998877655
No 99
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=34.53 E-value=98 Score=27.57 Aligned_cols=47 Identities=13% Similarity=0.419 Sum_probs=36.1
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHH
Q 003751 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNE 134 (798)
Q Consensus 88 kt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cG-VGv~vt~e~i~~~v~~ 134 (798)
.+...+..|++.+-....+.|+.++|...+. +|..+|++++...+..
T Consensus 84 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~ 131 (156)
T 1wdc_B 84 DSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKE 131 (156)
T ss_dssp CCHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHCcCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 4667899999887666667899999987753 5677899998776654
No 100
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=34.51 E-value=19 Score=31.36 Aligned_cols=45 Identities=18% Similarity=0.366 Sum_probs=35.5
Q ss_pred HhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHH
Q 003751 91 AQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (798)
Q Consensus 91 ~Ql~aAlkyl~~~~~~~id~~~Fe~~cG-VGv~vt~e~i~~~v~~~ 135 (798)
.++..|++.+-.+..+.|+.++|...+. +|..+|.+||++.+..+
T Consensus 36 ~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~ 81 (100)
T 2lv7_A 36 EEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRL 81 (100)
T ss_dssp HHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 4577888888777778899999988764 57889999998877654
No 101
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=34.27 E-value=1e+02 Score=28.25 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=21.6
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHc
Q 003751 89 TPAQLEAAFSFFASTGSENFEVDEFEEAC 117 (798)
Q Consensus 89 t~~Ql~aAlkyl~~~~~~~id~~~Fe~~c 117 (798)
+...+..+++.+-....+.|+.++|...+
T Consensus 90 ~~~~~~~~f~~~D~d~~G~i~~~e~~~~~ 118 (183)
T 1s6c_A 90 VHEKLRWTFNLYDINKDGYINKEEMMDIV 118 (183)
T ss_dssp HHHHHHHHHHHHCTTCSSCEEHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence 55678888887765555678888888776
No 102
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=33.99 E-value=47 Score=30.96 Aligned_cols=50 Identities=12% Similarity=0.154 Sum_probs=39.5
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHc-CCCeeeCHHHHHHHHHHH
Q 003751 86 KIKTPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNEV 135 (798)
Q Consensus 86 ~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~c-GVGv~vt~e~i~~~v~~~ 135 (798)
...+..+|..|++.+-....+.|+.++|...+ -+|..+|++||.+.+..+
T Consensus 80 ~~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l~~~~ 130 (159)
T 3i5g_C 80 TGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFC 130 (159)
T ss_dssp TTCCHHHHHHHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 34566789999999977766789999998875 367889999998777643
No 103
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=33.41 E-value=79 Score=26.53 Aligned_cols=61 Identities=11% Similarity=0.239 Sum_probs=43.7
Q ss_pred CchHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHc-CCCeeeCHHHHHHHHHHH
Q 003751 73 VHRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNEV 135 (798)
Q Consensus 73 ~~~~~~~~yI~~~~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~c-GVGv~vt~e~i~~~v~~~ 135 (798)
.+...+...+.. -.+..++..+++.+-.+..+.|+.++|...+ .+|..+|++++++.+..+
T Consensus 13 ~~~~~~~~~~~~--~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~ 74 (94)
T 2kz2_A 13 GENLYFQSLMKD--TDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 74 (94)
T ss_dssp CCTHHHHHHHCC--CSCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHhcC--CCHHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 345555555433 3477889999998876666789999998765 346778999988776644
No 104
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=33.14 E-value=2.4e+02 Score=24.40 Aligned_cols=46 Identities=30% Similarity=0.487 Sum_probs=36.5
Q ss_pred HHhHHHHHHHHHhcCCCCCCHHHHHHHcC--CCeeeCHHHHHHHHHHH
Q 003751 90 PAQLEAAFSFFASTGSENFEVDEFEEACG--VGVEVSSEDIELTVNEV 135 (798)
Q Consensus 90 ~~Ql~aAlkyl~~~~~~~id~~~Fe~~cG--VGv~vt~e~i~~~v~~~ 135 (798)
...+..+++.+-.+..+.|+.++|...+. .|..+|++++...+..+
T Consensus 87 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 134 (153)
T 3ox6_A 87 VKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDV 134 (153)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 46688888888666667899999998865 57889999988877655
No 105
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=33.14 E-value=2.9e+02 Score=25.30 Aligned_cols=113 Identities=12% Similarity=0.139 Sum_probs=55.7
Q ss_pred CCCChhHHHHHHHhcCCChhhHHHhhhC-------HHH-HHHHHHHHHHcccCCCCchhhhHHHHHHHhhCCCCCCCchH
Q 003751 5 SKGDKSEILELFLKIGLDDRTAKNTIAN-------NKV-TANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHRP 76 (798)
Q Consensus 5 ~~~~~~~~~~~f~~iGl~e~ka~e~~kn-------~~~-~~~l~~~I~~a~~~~~~~~~~g~lly~la~~~~~~~~~~~~ 76 (798)
++-..+++..+....|++++..+++.+. ..+ ...|..++...+.. ..+...-.-++...-.-.........
T Consensus 6 ~~l~~~el~~~~~~~~~~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~~~~~-~~~~~~~~~~f~~~D~d~~G~i~~~e 84 (190)
T 2l2e_A 6 SKLSQDQLQDLVRSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPF-GDPSAFAEYVFNVFDADKNGYIDFKE 84 (190)
T ss_dssp CCSCHHHHHHHHHHHCSCSHHHHHHHHHHHHHSCCCEECHHHHHHHHHHHCCC-SCHHHHHHHHHHHHCSSSTTCEEHHH
T ss_pred ccCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCC-CCccHHHHHHHHHhcCCCCCeEeHHH
Confidence 3446677777888889988877766542 111 12233333333221 01111111122222211111122233
Q ss_pred HHHHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC
Q 003751 77 TLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACG 118 (798)
Q Consensus 77 ~~~~yI~~~~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cG 118 (798)
++.-.-.-+.-.+...+..+++.+-.+..+.|+.++|...+.
T Consensus 85 f~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~~~ 126 (190)
T 2l2e_A 85 FICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVD 126 (190)
T ss_dssp HHHHHTTSSCSCSHHHHHHHHHHHCTTSCSCBCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhHccCCCCCcCcHHHHHHHHH
Confidence 333222233445667788888877655556788888877653
No 106
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=32.27 E-value=1.3e+02 Score=30.77 Aligned_cols=59 Identities=12% Similarity=0.251 Sum_probs=42.1
Q ss_pred hhHHHHHHHh--cCCChhhHHHhhhCHHHHHHHHHHHHHcccCCCCc--h-------hhhHHHHHHHhhCC
Q 003751 9 KSEILELFLK--IGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCE--R-------RIGNLLYTVATKYP 68 (798)
Q Consensus 9 ~~~~~~~f~~--iGl~e~ka~e~~kn~~~~~~l~~~I~~a~~~~~~~--~-------~~g~lly~la~~~~ 68 (798)
|...++.|++ .-+..+...|+-+||.+..++.+.....|++ ++. | ..|..-|.||.++-
T Consensus 12 ~~~Ql~~F~~~L~~FA~kH~~eI~~dp~fR~~F~~mc~siGVD-Plas~kg~ws~~lG~gdfy~eLavqIv 81 (234)
T 3cuq_A 12 MSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVD-PLASGKGFWSEMLGVGDFYYELGVQII 81 (234)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCC-TTSCTTSHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHHcCCC-cccCCcchhhhhcCcchHHHHHHHHHH
Confidence 4444444443 2344567789999999999999999999995 333 2 25788899987653
No 107
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=31.39 E-value=1.8e+02 Score=26.81 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=38.3
Q ss_pred HHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHH
Q 003751 90 PAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVF 136 (798)
Q Consensus 90 ~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~ 136 (798)
...+..|++.+-.+..+.|+.++|...+. |..+|++++.+.+..+=
T Consensus 107 ~~~~~~~F~~~D~d~~G~I~~~El~~~l~-~~~~~~~~~~~~~~~~d 152 (180)
T 3mse_B 107 STFLKAAFNKIDKDEDGYISKSDIVSLVH-DKVLDNNDIDNFFLSVH 152 (180)
T ss_dssp -CHHHHHHHHHCTTCSSCBCHHHHHHHTT-TSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHc-CCCCCHHHHHHHHHHhh
Confidence 36788999988766667899999999999 89999999988777654
No 108
>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular traffic, protein transport; 2.10A {Homo sapiens} SCOP: a.222.1.1 PDB: 1txu_A
Probab=30.62 E-value=81 Score=32.81 Aligned_cols=74 Identities=15% Similarity=0.269 Sum_probs=54.7
Q ss_pred CCCchhhhHHHHHHHhhCCCCCCCchHHHHHHHhcCCCC-CHH-----hHHHHHHHHHhcCCC--CCCHHHHHHHcCCCe
Q 003751 50 DGCERRIGNLLYTVATKYPTNALVHRPTLLLYIVSSKIK-TPA-----QLEAAFSFFASTGSE--NFEVDEFEEACGVGV 121 (798)
Q Consensus 50 ~~~~~~~g~lly~la~~~~~~~~~~~~~~~~yI~~~~ik-t~~-----Ql~aAlkyl~~~~~~--~id~~~Fe~~cGVGv 121 (798)
.+.|.=.-.|+|-+...-+++...+..+|-.++..+++. .+. ++.||+.|+++.... .++.++|++... |-
T Consensus 187 ~~ADd~LP~Liyvvika~~~~l~s~l~yI~~F~~~~~l~~GE~gY~lttl~aAv~fI~~l~~~~L~i~~~ef~~~~~-~~ 265 (274)
T 2ot3_A 187 ASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMS-GQ 265 (274)
T ss_dssp BCHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCTTTTTSSHHHHHHHHHHHHHHHHHHCCTGGGTCCHHHHHHHHT-TS
T ss_pred CCHHHHHHHHHHHHHHcCcchHHHHHHHHHHHcCcccccCCHHHHHHHHHHHHHHHHHhCCHHhcCCCHHHHHHHHh-hc
Confidence 456788888999998776666666778888888777764 333 589999999976533 588899998876 44
Q ss_pred eeC
Q 003751 122 EVS 124 (798)
Q Consensus 122 ~vt 124 (798)
...
T Consensus 266 ~~~ 268 (274)
T 2ot3_A 266 TSP 268 (274)
T ss_dssp CCC
T ss_pred cCC
Confidence 333
No 109
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=30.08 E-value=1.9e+02 Score=26.50 Aligned_cols=111 Identities=13% Similarity=0.131 Sum_probs=53.8
Q ss_pred CCCCChhHHHHHHHhcCCChhhHHHhhhC-------HHH-HHHHHHHHHHcccCCCCchhhhHHHHHHHhhCCCC---CC
Q 003751 4 VSKGDKSEILELFLKIGLDDRTAKNTIAN-------NKV-TANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTN---AL 72 (798)
Q Consensus 4 ~~~~~~~~~~~~f~~iGl~e~ka~e~~kn-------~~~-~~~l~~~I~~a~~~~~~~~~~g~lly~la~~~~~~---~~ 72 (798)
.|+-..+++-.+....++++...++..+- ..+ ...|..++...+.. +.+.. .+..+-..+-.+ ..
T Consensus 5 ~~~l~~~~l~~l~~~~~~~~~~i~~~~~~fd~~~~~G~i~~~e~~~~l~~~~~~-~~~~~---~~~~~f~~~D~d~~G~i 80 (190)
T 1fpw_A 5 TSKLSKDDLTCLKQSTYFDRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPF-GSPED---FANHLFTVFDKDNNGFI 80 (190)
T ss_dssp SCCSTTHHHHHHTTTCCSTHHHHHHHHHHHHHHCTTCCEEHHHHHHHHHHHCTT-SCCSH---HHHHHHHTCCSSCSSEE
T ss_pred cCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCcCcHHHHHHHHHHHcCC-CCcHH---HHHHHHHHHCCCCCCcE
Confidence 34556777777777788888877665331 111 12233333322210 01111 112222222111 12
Q ss_pred CchHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC
Q 003751 73 VHRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACG 118 (798)
Q Consensus 73 ~~~~~~~~yI~~~~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cG 118 (798)
....++.-.-.-+.-.+...+..+++.+-.+..+.|+.++|...+.
T Consensus 81 ~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~ef~~~~~ 126 (190)
T 1fpw_A 81 HFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVA 126 (190)
T ss_dssp CHHHHHHHHHHHSCCCSTHHHHHHHHHHCSSCSSEEEHHHHHHHHH
T ss_pred eHHHHHHHHHHHccCCcHHHHHHHHHHhcCCCCCcCcHHHHHHHHH
Confidence 2233332222223334567788888877655556788888887653
No 110
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=28.88 E-value=1e+02 Score=27.36 Aligned_cols=62 Identities=16% Similarity=0.007 Sum_probs=42.5
Q ss_pred HHHHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhh
Q 003751 77 TLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEEN 139 (798)
Q Consensus 77 ~~~~yI~~~~ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~ 139 (798)
.+++-|.+..-.|...++.+|..+..+. .-.+-.++-=.---|...|||.|-+.|.++-++|
T Consensus 17 ~lv~~I~~~~~~~E~e~d~ll~~fe~it-eHP~gSDLIfyP~~~~e~SPEgIv~~IKeWRa~n 78 (94)
T 3u43_A 17 EFVKKICRAEGATEEDDNKLVREFERLT-EHPDGSDLIYYPRDDREDSPEGIVKEIKEWRAAN 78 (94)
T ss_dssp HHHHHHHHTCCSSHHHHHHHHHHHHHHH-CCTTTTHHHHSCCTTSCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhC-CCCCccCeeeeCCCCCCCCHHHHHHHHHHHHHHc
Confidence 3477888887789999999999876542 1111122222222278999999999999988775
No 111
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=28.85 E-value=2.2e+02 Score=23.78 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=38.6
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCC----CeeeCHHHHHHHHHHH
Q 003751 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACGV----GVEVSSEDIELTVNEV 135 (798)
Q Consensus 88 kt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGV----Gv~vt~e~i~~~v~~~ 135 (798)
.+..++..|++.+-.+..+.|+.++|...+.- |..+|+++++..+..+
T Consensus 39 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (109)
T 3fs7_A 39 KTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAG 90 (109)
T ss_dssp CCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHHHHHHHHh
Confidence 46788999999887776678999999987642 7889999988777654
No 112
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=27.82 E-value=2.1e+02 Score=26.23 Aligned_cols=27 Identities=19% Similarity=0.058 Sum_probs=19.5
Q ss_pred CCCCChhHHHHHHHhcCCChhhHHHhh
Q 003751 4 VSKGDKSEILELFLKIGLDDRTAKNTI 30 (798)
Q Consensus 4 ~~~~~~~~~~~~f~~iGl~e~ka~e~~ 30 (798)
.|+-.++++..+....+++....+++.
T Consensus 5 ~~~l~~~~l~~l~~~~~~~~~~i~~~f 31 (190)
T 1g8i_A 5 NSKLKPEVVEELTRKTYFTEKEVQQWY 31 (190)
T ss_dssp CCSCCHHHHHHHHHTSSSCHHHHHHHH
T ss_pred cccCCHHHHHHHHHccCCCHHHHHHHH
Confidence 456677777777777888887766644
No 113
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=27.36 E-value=2.1e+02 Score=25.66 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=37.5
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHH
Q 003751 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (798)
Q Consensus 88 kt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cG-VGv~vt~e~i~~~v~~~ 135 (798)
.+...+..|++.+-....+.|+.++|...+. +|..+|++++...+..+
T Consensus 92 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 140 (166)
T 2mys_B 92 DPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAF 140 (166)
T ss_pred CcHHHHHHHHHHhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Confidence 4567889999988766667899999988863 56778999988777653
No 114
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=26.58 E-value=80 Score=26.57 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=38.2
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCC----CeeeCHHHHHHHHHHH
Q 003751 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACGV----GVEVSSEDIELTVNEV 135 (798)
Q Consensus 88 kt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGV----Gv~vt~e~i~~~v~~~ 135 (798)
.+..++..|++.+-.+..+.|+.++|...+.. |..+|++++.+.+..+
T Consensus 38 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (108)
T 2pvb_A 38 KSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADG 89 (108)
T ss_dssp SCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHh
Confidence 35678899999887666678999999988743 7789999988777654
No 115
>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A*
Probab=26.01 E-value=1.2e+02 Score=31.25 Aligned_cols=66 Identities=21% Similarity=0.302 Sum_probs=48.8
Q ss_pred CCCchhhhHHHHHHHhhCCCCCCCchHHHHHHHhcCCCCCHH-----hHHHHHHHHHhcCCC--CCCHHHHHH
Q 003751 50 DGCERRIGNLLYTVATKYPTNALVHRPTLLLYIVSSKIKTPA-----QLEAAFSFFASTGSE--NFEVDEFEE 115 (798)
Q Consensus 50 ~~~~~~~g~lly~la~~~~~~~~~~~~~~~~yI~~~~ikt~~-----Ql~aAlkyl~~~~~~--~id~~~Fe~ 115 (798)
.+.|.=.-.|+|-+...-+++...+..+|-.++....+..+. ++.||+.|+.+.... .++.++|++
T Consensus 184 ~~ADd~LP~Liyvvika~~~~L~s~l~yI~~f~~~~~l~gE~gY~lt~l~aA~~fI~~l~~~~L~i~~~ef~~ 256 (267)
T 2efe_A 184 PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAKSISLDEAEFEK 256 (267)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHTCCTTTTTCCHHHHHH
T ss_pred CChhHHHHHHHHHHHhcCcccHHHHHHHHHHHcCccccCCHHHHHHHHHHHHHHHHHhCCHhhCCCCHHHHHH
Confidence 456888889999999776666666777888888777776553 489999999975432 366666665
No 116
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=25.73 E-value=3.2e+02 Score=26.94 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=20.8
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHc
Q 003751 88 KTPAQLEAAFSFFASTGSENFEVDEFEEAC 117 (798)
Q Consensus 88 kt~~Ql~aAlkyl~~~~~~~id~~~Fe~~c 117 (798)
.+..++..+++.+-.+..+.|+.++|...+
T Consensus 162 ~~~~~l~~~F~~~D~d~dG~I~~~Ef~~~l 191 (256)
T 2jul_A 162 TVHEKLKWAFNLYDINKDGCITKEEMLAIM 191 (256)
T ss_dssp CHHHHHHHHHHHTCCSSSSCBCHHHHHHHH
T ss_pred ChHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 356677788776655555678888887766
No 117
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=25.36 E-value=2.7e+02 Score=23.95 Aligned_cols=48 Identities=15% Similarity=0.218 Sum_probs=37.4
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHH
Q 003751 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (798)
Q Consensus 88 kt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cG-VGv~vt~e~i~~~v~~~ 135 (798)
.....+..+++.+-.+..+.|+.++|...+. +|..+|++++.+.+..+
T Consensus 76 ~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 124 (142)
T 2bl0_C 76 TSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGIT 124 (142)
T ss_dssp CCHHHHHHHHHHTCCSSCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 3667889999888666667899999988763 56778999988877665
No 118
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=25.27 E-value=96 Score=29.96 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=37.5
Q ss_pred CCCCCChhHHHHHHHhcCCChhhHHHhhhCHHHHHHHHHHHHHcc
Q 003751 3 GVSKGDKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAA 47 (798)
Q Consensus 3 ~~~~~~~~~~~~~f~~iGl~e~ka~e~~kn~~~~~~l~~~I~~a~ 47 (798)
|..-++.+.+.++...+||+..+..+.+.+..+.+.+.+-..+|.
T Consensus 119 ~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~ 163 (208)
T 3kzq_A 119 AMPPHEEATHLQLAKEIGLNVQQFKNDMDGTLLEGVFQDQLSLAK 163 (208)
T ss_dssp CCCTTCHHHHHHHHHHTTCCHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 344567888999999999999999999999998888877766654
No 119
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=24.44 E-value=91 Score=26.21 Aligned_cols=48 Identities=10% Similarity=0.194 Sum_probs=38.4
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCC----CeeeCHHHHHHHHHHH
Q 003751 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACGV----GVEVSSEDIELTVNEV 135 (798)
Q Consensus 88 kt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGV----Gv~vt~e~i~~~v~~~ 135 (798)
....++..+++.+-.+..+.|+.++|...+.- |..+|++++...+..+
T Consensus 39 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 90 (110)
T 1pva_A 39 MSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAA 90 (110)
T ss_dssp SCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHHh
Confidence 35678899999887666678999999988652 7889999988777654
No 120
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=24.07 E-value=43 Score=32.02 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=37.1
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCC---CeeeCHHHHHHHHHHH
Q 003751 87 IKTPAQLEAAFSFFASTGSENFEVDEFEEACGV---GVEVSSEDIELTVNEV 135 (798)
Q Consensus 87 ikt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cGV---Gv~vt~e~i~~~v~~~ 135 (798)
..+...+..|++.+-....+.|+.++|.+.++- |..+|++++++.+..+
T Consensus 125 ~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~~~~~~~~~l~~~~ 176 (197)
T 3pm8_A 125 YLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEV 176 (197)
T ss_dssp HCSHHHHHHHHHHHCTTCSSEECHHHHHHHHC----CCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCCCCHHHHHHHHHHH
Confidence 345678888999887666678999999998864 6678888887776654
No 121
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=23.83 E-value=72 Score=26.10 Aligned_cols=45 Identities=13% Similarity=0.318 Sum_probs=34.6
Q ss_pred HhHHHHHHHHH-hcCCC-CCCHHHHHHHcC------CCeeeCHHHHHHHHHHH
Q 003751 91 AQLEAAFSFFA-STGSE-NFEVDEFEEACG------VGVEVSSEDIELTVNEV 135 (798)
Q Consensus 91 ~Ql~aAlkyl~-~~~~~-~id~~~Fe~~cG------VGv~vt~e~i~~~v~~~ 135 (798)
.++..+++.+- ..+.+ .|+..+|...+. +|..+|++++.+.+..+
T Consensus 9 ~~l~~~F~~~D~~d~~G~~I~~~el~~~l~~~~~~~~g~~~~~~~~~~~~~~~ 61 (93)
T 1k2h_A 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKEL 61 (93)
T ss_dssp HHHHHHHHHHHTTSSCCSSCCHHHHHHHHHHHTHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCcCccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 45778888776 46667 899999988765 67888999988777654
No 122
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=23.65 E-value=63 Score=30.80 Aligned_cols=50 Identities=22% Similarity=0.396 Sum_probs=40.9
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHcC--CCeeeCHHHHHHHHHHHHHh
Q 003751 89 TPAQLEAAFSFFASTGSENFEVDEFEEACG--VGVEVSSEDIELTVNEVFEE 138 (798)
Q Consensus 89 t~~Ql~aAlkyl~~~~~~~id~~~Fe~~cG--VGv~vt~e~i~~~v~~~~~~ 138 (798)
....+..|++.+-....+.|+.++|...+. +|..+|++++++.|+.++..
T Consensus 111 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~s~~~~~~l~~~~~~~ 162 (208)
T 2ct9_A 111 RSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQE 162 (208)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCEEcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 456788888888766667899999999886 47889999999988777765
No 123
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=22.67 E-value=1.2e+02 Score=26.27 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=37.0
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHc-CCCeeeCHHHHHHHHHHH
Q 003751 88 KTPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNEV 135 (798)
Q Consensus 88 kt~~Ql~aAlkyl~~~~~~~id~~~Fe~~c-GVGv~vt~e~i~~~v~~~ 135 (798)
.+...+..|++.+-.+..+.|+.++|...+ .+|..+|++++...+..+
T Consensus 73 ~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~ 121 (143)
T 3j04_B 73 DPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREA 121 (143)
T ss_dssp CCHHHHHHHHTTSCSSSCCCCCTTTHHHHHHTSSSCCCHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 355778888887766666789999999877 467889999988776654
No 124
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=22.48 E-value=2e+02 Score=24.66 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=33.4
Q ss_pred HhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHH
Q 003751 91 AQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEV 135 (798)
Q Consensus 91 ~Ql~aAlkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~ 135 (798)
..|..++.|+..+...+++.+++-+.+| +|+..+.....+.
T Consensus 2 ~~i~~~~~~i~~~~~~~~~~~~lA~~~~----~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 2 NAVRQVEEYIEANWMRPITIEKLTALTG----ISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHHHTTSCCCHHHHHHHHT----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCCCHHHHHHHHC----CCHHHHHHHHHHH
Confidence 4678999999999877899999999999 5677777666655
No 125
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=22.43 E-value=1.7e+02 Score=25.09 Aligned_cols=42 Identities=10% Similarity=0.253 Sum_probs=35.0
Q ss_pred HhHHHHHHHHHhcCC-CCCCHHHHHHHcCCCeeeCHHHHHHHHHHHH
Q 003751 91 AQLEAAFSFFASTGS-ENFEVDEFEEACGVGVEVSSEDIELTVNEVF 136 (798)
Q Consensus 91 ~Ql~aAlkyl~~~~~-~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~ 136 (798)
..|..+++|+..|.. .+++.+++-+.+| +|+..+.....+.+
T Consensus 3 ~~i~~~~~~i~~~~~~~~~~~~~lA~~~~----~S~~~l~r~fk~~~ 45 (107)
T 2k9s_A 3 NRVREACQYISDHLADSNFDIASVAQHVC----LSPSRLSHLFRQQL 45 (107)
T ss_dssp HHHHHHHHHHHHTSSCSSCCHHHHHHHTT----SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHHC----CCHHHHHHHHHHHH
Confidence 568899999999986 7899999999999 57777777776654
No 126
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=22.31 E-value=55 Score=30.26 Aligned_cols=47 Identities=23% Similarity=0.348 Sum_probs=38.3
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHc-CCCeeeCHHHHHHHHHH
Q 003751 88 KTPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNE 134 (798)
Q Consensus 88 kt~~Ql~aAlkyl~~~~~~~id~~~Fe~~c-GVGv~vt~e~i~~~v~~ 134 (798)
.+...|..|++.+-..+.+.|+.++|...+ .+|..+|+++|.+.+..
T Consensus 82 ~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~ei~~~~~~ 129 (153)
T 3i5g_B 82 DPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKD 129 (153)
T ss_dssp CCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHSSSSCCCHHHHHHHHTT
T ss_pred ccHHHHHHHHhccccCCCCeEeHHHHHHHHHHcCCcCCHHHHHHHHHH
Confidence 456789999999877777889999998876 47889999998876653
No 127
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=21.89 E-value=1.3e+02 Score=33.08 Aligned_cols=51 Identities=14% Similarity=0.015 Sum_probs=29.8
Q ss_pred CcceEecCcccccchhhHHHHHHHh-----------------CCCCCceeeeeee-cCCCeeeeccccc
Q 003751 467 NITHSLCTLEFETRRASYFWLLHAL-----------------GLYQPYVWEYSRL-NVSNTVMSKRKLN 517 (798)
Q Consensus 467 gITHviRG~E~~~~t~~q~~L~~aL-----------------g~~~P~~w~f~~L-n~~g~KLSKR~~~ 517 (798)
+.++++-|.|=..|-..=.-|.+.+ ++..|.....++| ..+|+||||+.++
T Consensus 232 ~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~n 300 (392)
T 1y42_X 232 GVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGN 300 (392)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSS
T ss_pred CccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCC
Confidence 5677777777654443333333222 2234444444554 7799999999876
No 128
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=21.18 E-value=2.1e+02 Score=25.00 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=38.3
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHc-CCCeeeCHHHHHHHHHHH
Q 003751 88 KTPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNEV 135 (798)
Q Consensus 88 kt~~Ql~aAlkyl~~~~~~~id~~~Fe~~c-GVGv~vt~e~i~~~v~~~ 135 (798)
.+...+..|++.+-.++.+.|+.++|...+ .+|..+|++++...+..+
T Consensus 81 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 129 (146)
T 2qac_A 81 DNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAF 129 (146)
T ss_dssp CCHHHHHHHHHTTCTTCSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 356788899987766665779999998776 357789999999998877
No 129
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13
Probab=21.14 E-value=99 Score=30.17 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=33.6
Q ss_pred CChhHHHHHHHhcCCChhhHHHhhhCHHHHHHHHHHHHHc
Q 003751 7 GDKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEA 46 (798)
Q Consensus 7 ~~~~~~~~~f~~iGl~e~ka~e~~kn~~~~~~l~~~I~~a 46 (798)
++.+.+.+++..+||+..+..+.+.+..+.+.+......+
T Consensus 4 ~d~~~L~~~a~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a 43 (197)
T 1un2_A 4 RSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAA 43 (197)
T ss_dssp SSHHHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 5788899999999999999999999998887776554443
No 130
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=20.69 E-value=1.3e+02 Score=24.11 Aligned_cols=41 Identities=17% Similarity=0.378 Sum_probs=29.5
Q ss_pred HHhHHHHHHHHHhcC--CCCCC-HHHHHHHcCCCeeeCHHHHHHHHHH
Q 003751 90 PAQLEAAFSFFASTG--SENFE-VDEFEEACGVGVEVSSEDIELTVNE 134 (798)
Q Consensus 90 ~~Ql~aAlkyl~~~~--~~~id-~~~Fe~~cGVGv~vt~e~i~~~v~~ 134 (798)
...|+.|++||.+-. ..+++ ..+|-+.=| +|.|||+.+++.
T Consensus 10 e~li~~Av~FL~dp~V~~sp~~~K~~FL~sKG----Lt~~EI~~Al~r 53 (54)
T 3ff5_A 10 EPLIATAVKFLQNSRVRQSPLATRRAFLKKKG----LTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHHHCTTGGGSCHHHHHHHHHHTT----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChhhhcCCHHHHHHHHHHcC----CCHHHHHHHHHc
Confidence 457889999997421 12333 467999888 899999998763
No 131
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=20.20 E-value=70 Score=24.09 Aligned_cols=44 Identities=23% Similarity=0.315 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHH
Q 003751 92 QLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (798)
Q Consensus 92 Ql~aAlkyl~~~~~~~id~~~Fe~~cG-VGv~vt~e~i~~~v~~~ 135 (798)
++..+++.+-.+..+.++.++|...+. +|..+|++++...+..+
T Consensus 2 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 46 (67)
T 1tiz_A 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEI 46 (67)
T ss_dssp THHHHHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 355566656555556677777766542 45667777776655543
No 132
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=20.16 E-value=48 Score=28.64 Aligned_cols=53 Identities=8% Similarity=0.205 Sum_probs=41.9
Q ss_pred HHhHHH-HHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhHhHHHhh
Q 003751 90 PAQLEA-AFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILEL 146 (798)
Q Consensus 90 ~~Ql~a-Alkyl~~~~~~~id~~~Fe~~cGVGv~vt~e~i~~~v~~~~~~~k~~~~~~ 146 (798)
...+.+ -|..++++| ..++.+++..+++ .|+.+|...+|.+++.+.+=++..+
T Consensus 12 ~~~ie~~IL~l~~~~P-~GItd~~L~~~~p---~~~~~~r~~aIN~LL~~gkiel~K~ 65 (81)
T 2dk8_A 12 PVEIENRIIELCHQFP-HGITDQVIQNEMP---HIEAQQRAVAINRLLSMGQLDLLRS 65 (81)
T ss_dssp HHHHHHHHHHHHHHCS-SCEEHHHHHHHCT---TSCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHHHHHHhCC-CCCCHHHHHHHCC---CCCHHHHHHHHHHHHHcCCeEEEec
Confidence 344443 356778887 7799999999997 4799999999999999988766543
No 133
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=20.10 E-value=4.1e+02 Score=22.72 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=36.1
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHH
Q 003751 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNE 134 (798)
Q Consensus 88 kt~~Ql~aAlkyl~~~~~~~id~~~Fe~~cG-VGv~vt~e~i~~~v~~ 134 (798)
.+...+..|++.+-.+..+.|+.++|...+. +|..+|++++...+..
T Consensus 82 ~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 129 (149)
T 2mys_C 82 GTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKG 129 (149)
T ss_pred chHHHHHHHHHHhCCCCCceEcHHHHHHHHHHhCCCCCHHHHHHHHhh
Confidence 3467788888877666667899999988763 4677899998887765
Done!