RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 003751
(798 letters)
>gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase.
Length = 788
Score = 1575 bits (4080), Expect = 0.0
Identities = 658/787 (83%), Positives = 708/787 (89%), Gaps = 8/787 (1%)
Query: 13 LELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNAL 72
LELFLKIGLD+RTA+N IANNKVT+NLTAVIHEA VT+GC++ +GNLLYTVATKYP NAL
Sbjct: 9 LELFLKIGLDERTARNAIANNKVTSNLTAVIHEAGVTNGCDKTVGNLLYTVATKYPANAL 68
Query: 73 VHRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTV 132
VHRPTLL YIVSSKIKTPAQLEAAFSFF+STG E+F++++FEEACGVGV VS EDIE V
Sbjct: 69 VHRPTLLSYIVSSKIKTPAQLEAAFSFFSSTGPESFDLNKFEEACGVGVVVSPEDIEAAV 128
Query: 133 NEVFEENKNTILELRYRTNVGDLFAHVRKRLPWADPKIVKQLIDARMYELLGERTAADIE 192
NEVFEENK ILE RYRTNVGDL VRKRLPWADPKIVK+LID ++YELLGE+TAAD E
Sbjct: 129 NEVFEENKEKILEQRYRTNVGDLLGQVRKRLPWADPKIVKKLIDKKLYELLGEKTAADNE 188
Query: 193 KLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNFPPPEENYKQVHTEIPFSD 252
K KKK KEKP K E+KK A A EE+L P S FP PEEN+K VHTE+ FSD
Sbjct: 189 KPVKKK-----KEKPAKVEEKKVA-VAAAPPSEEELNPYSIFPQPEENFK-VHTEVFFSD 241
Query: 253 GSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYL 312
GSVL NTKE+L+KHL+ TGG V TRFPPEPNGYLHIGHAKAMFVDFGLAKERGG CYL
Sbjct: 242 GSVLRPSNTKEILEKHLKATGGKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYL 301
Query: 313 RYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQ 372
R+DDTNPEAEKKEYIDHIEEIV+WMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQ
Sbjct: 302 RFDDTNPEAEKKEYIDHIEEIVEWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQ 361
Query: 373 TPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 432
TPEEIKEYREKKMNSPWRDRPI ESLKLFEDMR G IEEGKATLRMKQDMQNDNFNMYDL
Sbjct: 362 TPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRGLIEEGKATLRMKQDMQNDNFNMYDL 421
Query: 433 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG 492
IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDS+ENITHSLCTLEFETRRASY+WLL +LG
Sbjct: 422 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLG 481
Query: 493 LYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAF 552
LYQPYVWEYSRLNV+NTVMSKRKLN LVT KYVDGWDDP L+TLAGLRRRGVT T+INAF
Sbjct: 482 LYQPYVWEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAF 541
Query: 553 VQGIGISRSD-SLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKR 611
+GIGI+RSD SLIR+DRLE+HIREELNKTAPRTMVVL+PLKVVITN+ESG ++ LDAKR
Sbjct: 542 CRGIGITRSDNSLIRMDRLEHHIREELNKTAPRTMVVLHPLKVVITNLESGEVIELDAKR 601
Query: 612 WPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVIL 671
WPDAQ DD SAFYKVPFS VVYIE SDFR+KDSKDYYGLAPGKSVLLRYAFPIKCT+V+L
Sbjct: 602 WPDAQNDDPSAFYKVPFSRVVYIERSDFRLKDSKDYYGLAPGKSVLLRYAFPIKCTDVVL 661
Query: 672 SDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDD 731
+DD ET++ IRAEYDP KKTKPKGVLHWVAEPSPGV PL+VEVRLF+KLF SENPAEL+D
Sbjct: 662 ADDNETVVEIRAEYDPEKKTKPKGVLHWVAEPSPGVEPLKVEVRLFDKLFLSENPAELED 721
Query: 732 WLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKD 791
WL DLNP SK VI AYA PSL A VGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKD
Sbjct: 722 WLEDLNPQSKEVISGAYAVPSLKDAKVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKD 781
Query: 792 SFPKGGK 798
S+ KGGK
Sbjct: 782 SYGKGGK 788
>gnl|CDD|235424 PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.
Length = 554
Score = 756 bits (1956), Expect = 0.0
Identities = 282/535 (52%), Positives = 353/535 (65%), Gaps = 22/535 (4%)
Query: 274 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEI 333
V TRFPPEPNGYLHIGHAK++ ++FGLA++ GG C LR+DDTNPE E +EY+D I+E
Sbjct: 28 TRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKED 87
Query: 334 VQWMGWEPF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYR----EKKMNSP 388
V+W+G++ ++ Y SDYF +LYE AVELI++G AYVD + EEI+EYR E NSP
Sbjct: 88 VRWLGFDWSGELRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKNSP 147
Query: 389 WRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDK 448
+RDR + E+L LFE MR G EG A LR K DM + N NM D + YRI+ H GDK
Sbjct: 148 YRDRSVEENLDLFERMRAGEFPEGSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGDK 207
Query: 449 WCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-YQPYVWEYSRLNVS 507
WCIYP YD+AHCI D+IE ITHSLCTLEFE R Y W+L L + P +E+SRLN++
Sbjct: 208 WCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDWVLDNLPIPPHPRQYEFSRLNLT 267
Query: 508 NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRL 567
TVMSKRKL LV K+VDGWDDP + T++GLRRRG T SI F + IG+++ DS+I +
Sbjct: 268 YTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDM 327
Query: 568 DRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVP 627
LE IRE+LN+ APR M VL+PLK+VITN G + L+A P+ D +VP
Sbjct: 328 SMLESCIREDLNENAPRAMAVLDPLKLVITNYPEGQVEELEAPNHPE---DPEMGTREVP 384
Query: 628 FSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDP 687
FS +YIE DF + K Y+ L PGK V LR A+ IKC EV+ D I I YDP
Sbjct: 385 FSRELYIEREDFMEEPPKKYFRLVPGKEVRLRNAYVIKCEEVV-KDADGNITEIHCTYDP 443
Query: 688 ---SKKT----KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDS 740
S K KG +HWV+ + + EVRL+++LF NPA D+L LNPDS
Sbjct: 444 DTLSGNPADGRKVKGTIHWVSAA----HAVPAEVRLYDRLFTVPNPAAGKDFLDFLNPDS 499
Query: 741 KVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPK 795
V+ + + EPSL A DRFQFER GYF DKDSTP KLVFNRTV L+DS+ K
Sbjct: 500 LVIK-QGFVEPSLADAKPEDRFQFEREGYFCADKDSTPGKLVFNRTVGLRDSWAK 553
>gnl|CDD|237793 PRK14703, PRK14703, glutaminyl-tRNA synthetase/YqeY domain fusion
protein; Provisional.
Length = 771
Score = 592 bits (1528), Expect = 0.0
Identities = 248/551 (45%), Positives = 339/551 (61%), Gaps = 24/551 (4%)
Query: 263 EVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA 321
E++++ LE V+TRFPPEPNGYLHIGHAK++ ++FG+A++ GG C+LR DDTNPE
Sbjct: 18 EIIEEDLEAGRYPRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPET 77
Query: 322 EKKEYIDHIEEIVQWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEY 380
E EY++ I++ V+W+G++ + Y SDYF+ +Y A +LI+ G AYVD + EEI+E
Sbjct: 78 EDTEYVEAIKDDVRWLGFDWGEHLYYASDYFERMYAYAEQLIKMGLAYVDSVSEEEIREL 137
Query: 381 R----EKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYR 436
R E SP+RDR + E+L LF MR G +G LR K DM + N + D + YR
Sbjct: 138 RGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFPDGAHVLRAKIDMSSPNMKLRDPLLYR 197
Query: 437 IKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY-- 494
I+ H GD+WCIYP YD+AH + D+IE +THS+CTLEFE RA Y W+L LG +
Sbjct: 198 IRHAHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDWVLDHLGPWPP 257
Query: 495 QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQ 554
+P +E++RL + TVMSKRKL LV YV GWDDP + T+AG RRRGVT +I F
Sbjct: 258 RPRQYEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFAD 317
Query: 555 GIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPD 614
IG+++++S + + LE+ IR++LN+ APR M VL+PLKVVI N+ +G + LD WP
Sbjct: 318 QIGVAKTNSTVDIGVLEFAIRDDLNRRAPRVMAVLDPLKVVIENLPAGKVEELDLPYWPH 377
Query: 615 AQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDD 674
+ S KVPF+ +YIE DF K + L PG+ V LR A+ I+C EV+ D
Sbjct: 378 DVPKEGSR--KVPFTRELYIERDDFSEDPPKGFKRLTPGREVRLRGAYIIRCDEVV-RDA 434
Query: 675 KETILHIRAEYDPSKKT------KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAE 728
+ +R YDP K GV+HWV+ L EVRL+++LF P
Sbjct: 435 DGAVTELRCTYDPESAKGEDTGRKAAGVIHWVSAKH----ALPAEVRLYDRLFKVPQPEA 490
Query: 729 LD-DWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDK-DSTPEKLVFNRT 786
D D+L LNPDS V + EP++ R+QFER GYF D DS P+ LVFNR
Sbjct: 491 ADEDFLEFLNPDSLRVA-QGRVEPAVRDDPADTRYQFERQGYFWADPVDSRPDALVFNRI 549
Query: 787 VTLKDSFPKGG 797
+TLKD++
Sbjct: 550 ITLKDTWGARA 560
>gnl|CDD|232977 TIGR00440, glnS, glutaminyl-tRNA synthetase. This protein is a
relatively rare aminoacyl-tRNA synthetase, found in the
cytosolic compartment of eukaryotes, in E. coli and a
number of other Gram-negative Bacteria, and in
Deinococcus radiodurans. In contrast, the pathway to
Gln-tRNA in mitochondria, Archaea, Gram-positive
Bacteria, and a number of other lineages is by
misacylation with Glu followed by transamidation to
correct the aminoacylation to Gln. This enzyme is a
class I tRNA synthetase (hit by the pfam model
tRNA-synt_1c) and is quite closely related to
glutamyl-tRNA synthetases [Protein synthesis, tRNA
aminoacylation].
Length = 522
Score = 576 bits (1486), Expect = 0.0
Identities = 262/532 (49%), Positives = 343/532 (64%), Gaps = 24/532 (4%)
Query: 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 335
V TRFPPEPNGYLHIGHAK++ ++FG AK G C LR+DDTNP E EY++ I+ V+
Sbjct: 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVE 60
Query: 336 WMGWEP-FKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYR----EKKMNSPWR 390
W+G++ KI Y+SDYF ELY A ELI++G AYVD TPEEI+EYR + NSP+R
Sbjct: 61 WLGFKWEGKIRYSSDYFDELYRYAEELIKKGLAYVDELTPEEIREYRGTLTDPGKNSPYR 120
Query: 391 DRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWC 450
DR I E+L LFE MR+G+ +EGKA LR K DM + M D +AYRIKF PH G KWC
Sbjct: 121 DRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMRDPVAYRIKFAPHHQTGTKWC 180
Query: 451 IYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNVSNT 509
IYP YD+ HCI D++ENITHSLCTLEF+ R Y W+L + ++ +P +E+SRLN+ T
Sbjct: 181 IYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQYEFSRLNLEGT 240
Query: 510 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDR 569
V+SKRKL LV +K+V GWDDP + T++GLRRRG T SI F IG+++ D+ I + R
Sbjct: 241 VLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVR 300
Query: 570 LEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFS 629
LE IRE+LN+ APR M V++P++VVI N+ + P+ +VPF+
Sbjct: 301 LESCIREDLNENAPRAMAVIDPVEVVIENLSDEYEL----ATIPNHPNTPEFGERQVPFT 356
Query: 630 NVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYD--- 686
N YI+ +DFR + +K Y L GK V LR A+ IK E + D I I YD
Sbjct: 357 NEFYIDRADFREEANKQYKRLVLGKEVRLRNAYVIK-AERVEKDAAGKITTIFCTYDNKT 415
Query: 687 ----PSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKV 742
P+ K KGV+HWV + E RL+++LF NP DD+LS +NP+S +
Sbjct: 416 LGKEPADGRKVKGVIHWV----SASSKYPTETRLYDRLFKVPNPGAPDDFLSVINPES-L 470
Query: 743 VIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSF 793
VI + + E SL A RFQFER GYF +D K+ST EK+VFNRTV+LKD+
Sbjct: 471 VIKQGFMEHSLGDAVANKRFQFEREGYFCLDSKESTTEKVVFNRTVSLKDAT 522
>gnl|CDD|240418 PTZ00437, PTZ00437, glutaminyl-tRNA synthetase; Provisional.
Length = 574
Score = 578 bits (1490), Expect = 0.0
Identities = 263/542 (48%), Positives = 370/542 (68%), Gaps = 15/542 (2%)
Query: 258 CCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT 317
C NT E+L+KH VTGG RFPPEPNG+LHIGHAK+M ++FG A+ GG CYLRYDDT
Sbjct: 34 CRNTPELLEKHEAVTGGKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDT 93
Query: 318 NPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEI 377
NPE E++ YID I E+V+WMGW+P +T++SDYF +L+E AV+LI+ G AYVDH TP+E+
Sbjct: 94 NPETEEQVYIDAIMEMVKWMGWKPDWVTFSSDYFDQLHEFAVQLIKDGKAYVDHSTPDEL 153
Query: 378 KEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRI 437
K+ RE++ +SPWR+R + E+L LFE MR GR EG+ATLR+K DM++DN NM D IAYR+
Sbjct: 154 KQQREQREDSPWRNRSVEENLLLFEHMRQGRYAEGEATLRVKADMKSDNPNMRDFIAYRV 213
Query: 438 KFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPY 497
K+ HPHA DKWCIYPSYD+ HC++DS+E+I +SLCTLEFETRR SYFWLL L L++P+
Sbjct: 214 KYVEHPHAKDKWCIYPSYDFTHCLIDSLEDIDYSLCTLEFETRRESYFWLLEELNLWRPH 273
Query: 498 VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIG 557
VWE+SRLNV+ +++SKRK+N LV V G+DDP L+TLAG+RRRG T +IN F + +G
Sbjct: 274 VWEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVG 333
Query: 558 ISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESG-TIMHLDAKRWPDAQ 616
I+RS ++I++ LE +RE+L++ R ++V++P+KVV+ N + + R P+
Sbjct: 334 ITRSMNVIQISMLENTLREDLDERCERRLMVIDPIKVVVDNWKGEREFECPNHPRKPELG 393
Query: 617 ADDASAFYKVPFSNVVYIEHSDFRMKDS-KDYYGLAPGKSVL-LRYAFPIKCTEVILSDD 674
+ KV F++ Y++ SDFR +D+ +YGLAPG V+ L+Y+ + C +
Sbjct: 394 SR------KVMFTDTFYVDRSDFRTEDNNSKFYGLAPGPRVVGLKYSGNVVCKGFEVDAA 447
Query: 675 KETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLS 734
+ + I + D +K KPK + WV+ P VEVRL+ L + A ++L
Sbjct: 448 GQPSV-IHVDIDFERKDKPKTNISWVSA--TACTP--VEVRLYNALLKDDRAAIDPEFLK 502
Query: 735 DLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFP 794
++ DS+VV YAE + +A + Q ER GYF VD D+ P+ LV NR + L++
Sbjct: 503 FIDEDSEVVS-HGYAEKGIENAKHFESVQAERFGYFVVDPDTRPDHLVMNRVLGLREDKE 561
Query: 795 KG 796
K
Sbjct: 562 KA 563
>gnl|CDD|216096 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E and Q),
catalytic domain. Other tRNA synthetase sub-families
are too dissimilar to be included. This family includes
only glutamyl and glutaminyl tRNA synthetases. In some
organisms, a single glutamyl-tRNA synthetase
aminoacylates both tRNA(Glu) and tRNA(Gln).
Length = 314
Score = 413 bits (1063), Expect = e-139
Identities = 136/313 (43%), Positives = 173/313 (55%), Gaps = 10/313 (3%)
Query: 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 335
V TRF P P GYLHIGHA+ ++ AK G LR+DDT+PE EK EY + I E ++
Sbjct: 2 VRTRFAPSPTGYLHIGHARTALFNYLFAKNYNGKFILRFDDTDPEREKPEYEESILEDLK 61
Query: 336 WMGWEPF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKM--NSPWRDR 392
W+G + K Y SD F Y+ A ELI +G AYV TPEE++E RE++ SP R R
Sbjct: 62 WLGIKWDEKPYYQSDRFDIYYKYAEELIEKGLAYVCFCTPEELEEEREEQEALGSPERPR 121
Query: 393 PIAESLKLFEDM-RNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTP---HPHAGDK 448
E L+LFE+ R G E GKATLR K M++ + M DL+ RIKF P H G K
Sbjct: 122 YDEECLRLFEEEMRKGEAEGGKATLRFKIPMESP-YVMRDLVRGRIKFEPSALHDRTGLK 180
Query: 449 WCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNVS 507
W YP+YD+A I D+I ITH L E W+ ALG P++ EY RLN+
Sbjct: 181 WDGYPTYDFAVVIDDAIMGITHVLRGEEHLDNTPKQIWIYQALGWEVPPFIHEYLRLNLD 240
Query: 508 NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRL 567
T +SKRKL+ V V GW DP L LRRRG T I F + +S L R+
Sbjct: 241 GTKLSKRKLSLSVFISQVKGWGDPPEALLNFLRRRGWTPEGIREFFTREELIKSFDLNRV 300
Query: 568 -DRLEYHIREELN 579
LE R++L+
Sbjct: 301 SKSLEAFDRKKLD 313
>gnl|CDD|223087 COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synthetases
[Translation, ribosomal structure and biogenesis].
Length = 472
Score = 328 bits (842), Expect = e-104
Identities = 152/510 (29%), Positives = 213/510 (41%), Gaps = 59/510 (11%)
Query: 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 335
V TRF P P GYLHIGHA+ +++ A++ GG LR +DT+PE E E D I E ++
Sbjct: 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLE 69
Query: 336 WMGWEPFK-ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKM------NSP 388
W+G + + Y S+ F YE A +LI +G AYV + TPEE++E RE + S
Sbjct: 70 WLGLDWDEGPYYQSERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSY 129
Query: 389 WRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTP-HPH-AG 446
RD +L LFE M + E G A +R+K M + DL+ RI F P HP
Sbjct: 130 DRD---ERNLTLFEKMAD-LGEGGPAVVRLKIPMAHPGPVFRDLVRGRIVFAPKHPDFVI 185
Query: 447 DKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-N 505
++ YP+Y++A + D + ITH L + WL ALG P L N
Sbjct: 186 LRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLN 245
Query: 506 VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLI 565
+SKRK + V+GW P L L L RG +I F GI D I
Sbjct: 246 EDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTI 305
Query: 566 RLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYK 625
R++L+ PR M V P++VVI N++ + K
Sbjct: 306 VSKSPAAFDRKKLDWLNPRYMRVD-PVEVVIENLKPHLEEEGATLPLNPEMGERVVPLTK 364
Query: 626 VPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEY 685
++ IE DF + + V L+ + EV+ D AE
Sbjct: 365 ---ETLIEIERLDF--------FFFEDKEEVRLKRLANVIVAEVLEKD---------AEG 404
Query: 686 DPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIP 745
+ + ++HWV +LF + P L P +V +
Sbjct: 405 LITSDWTKENIIHWVKA--------------VARLFGVKGP--------KLFPPLRVALT 442
Query: 746 EAYAEPSLHSAAV--GDRFQFERLGYFAVD 773
Y EP L G QFERLGY D
Sbjct: 443 GGYVEPELADTIELLGKEVQFERLGYALAD 472
>gnl|CDD|215492 PLN02907, PLN02907, glutamate-tRNA ligase.
Length = 722
Score = 310 bits (797), Expect = 1e-94
Identities = 169/512 (33%), Positives = 278/512 (54%), Gaps = 38/512 (7%)
Query: 274 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEI 333
G V TRFPPEP+GYLHIGHAKA ++ A+ G +R+DDTNP E E++++I +
Sbjct: 212 GKVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKD 271
Query: 334 VQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRP 393
++ +G + +TYTSDYF +L E+A +LI+ G AYVD E++++ R + S R+
Sbjct: 272 IETLGIKYDAVTYTSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNS 331
Query: 394 IAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYP 453
+ E+L+L+++M G + +R K DMQ+ N ++ D + YR TPH G K+ +YP
Sbjct: 332 VEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPTPHHRIGSKYKVYP 391
Query: 454 SYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSK 513
+YD+A VD++E +TH+L + E+ R A Y+ +L +GL + ++WE+SRLN T++SK
Sbjct: 392 TYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGLRKVHIWEFSRLNFVYTLLSK 451
Query: 514 RKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGI---GISRSDSLIRLDRL 570
RKL + V N V+GWDDP T+ G+ RRG+ I A Q I G S++ +L+ D+L
Sbjct: 452 RKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLK---IEALKQFILSQGASKNLNLMEWDKL 508
Query: 571 EYHIREELNKTAPRTMVVLNPLKVVITNMESG-----TIMHLDAKRWPDAQADDASAFYK 625
++ ++ PR VL +V++T + G + K++ A A+
Sbjct: 509 WTINKKIIDPVCPRHTAVLKEGRVLLT-LTDGPETPFVRIIPRHKKYEGA-GKKATT--- 563
Query: 626 VPFSNVVYIEHSDFRMKDSKDYYGLAPGKSV-LLRYAFPIKCTEVILSDDKETILHIRAE 684
F+N ++++++D ++ G+ V L+ + I + I D+ + + E
Sbjct: 564 --FTNRIWLDYADAEA--------ISEGEEVTLMDWGNAI--IKEITKDEGGAVTALSGE 611
Query: 685 YDPS---KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSK 741
K TK K L W+ + + V VE F+ L + E D++L LNP +K
Sbjct: 612 LHLEGSVKTTKLK--LTWLPDTNELVPLSLVE---FDYLITKKKLEEDDNFLDVLNPCTK 666
Query: 742 VVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD 773
A + ++ + G+ Q ER GY+ D
Sbjct: 667 KETA-ALGDSNMRNLKRGEIIQLERKGYYRCD 697
>gnl|CDD|240404 PTZ00402, PTZ00402, glutamyl-tRNA synthetase; Provisional.
Length = 601
Score = 291 bits (747), Expect = 1e-88
Identities = 186/523 (35%), Positives = 281/523 (53%), Gaps = 42/523 (8%)
Query: 274 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEI 333
G V+TRFPPE +G+LHIGHAKA ++ LA + G R+DDTNP EK+ + I +
Sbjct: 51 GKVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDD 110
Query: 334 VQWMGWEPFKI--TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRD 391
+ +G + + TY+SDY +YE A ELI++G AY D EE+++ R + + +RD
Sbjct: 111 LATLG-VSWDVGPTYSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRD 169
Query: 392 RPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCI 451
+ E+ +L+ +M+ G E + LR K + N+N M D + YR+ TPH G K+
Sbjct: 170 ISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAMRDPVIYRVNLTPHARQGTKYKA 229
Query: 452 YPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVM 511
YP+YD+ I+DS+E +TH+L T E+ R Y+W ALG+ +P V ++SRLN+ +VM
Sbjct: 230 YPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRKPIVEDFSRLNMEYSVM 289
Query: 512 SKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLE 571
SKRKL LV VDGWDDP T+ L RRG+ ++ FVQ G+S++ + + +L
Sbjct: 290 SKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLW 349
Query: 572 YHIREELNKTAPRTMVVLNPLKVVIT-----NMESG-TIMHLDAKRWPDAQADDASAFYK 625
Y + L+ + PR VV N LKV T ++E+ ++H K+ PD +YK
Sbjct: 350 YFNTQILDPSVPRYTVVSNTLKVRCTVEGQIHLEACEKLLH---KKVPDM---GEKTYYK 403
Query: 626 VPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLR-----YAFPIKCT-EVILSDDKETIL 679
S+V+++ D++D L G V L Y I+ + E L D + +L
Sbjct: 404 ---SDVIFL--------DAEDVALLKEGDEVTLMDWGNAYIKNIRRSGEDALITDADIVL 452
Query: 680 HIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPD 739
H+ + KKTK K L WV E SP +E+ ++ L + P + + P
Sbjct: 453 HLEGDV---KKTKFK--LTWVPE-SP--KAEVMELNEYDHLLTKKKPDPEESIDDIIAPV 504
Query: 740 SKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLV 782
+K E Y E +L GD Q ER GY+ VD TP+K++
Sbjct: 505 TKYT-QEVYGEEALSVLKKGDIIQLERRGYYIVDDV-TPKKVL 545
>gnl|CDD|232985 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and
eukaryotic family. The glutamyl-tRNA synthetases of the
eukaryotic cytosol and of the Archaea are more similar
to glutaminyl-tRNA synthetases than to bacterial
glutamyl-tRNA synthetases. This model models just the
eukaryotic cytosolic and archaeal forms of the enzyme.
In some eukaryotes, the glutamyl-tRNA synthetase is part
of a longer, multifunctional aminoacyl-tRNA ligase. In
many species, the charging of tRNA(gln) proceeds first
through misacylation with Glu and then transamidation.
For this reason, glutamyl-tRNA synthetases, including
all known archaeal enzymes (as of 2010) may act on both
tRNA(gln) and tRNA(glu) [Protein synthesis, tRNA
aminoacylation].
Length = 556
Score = 280 bits (717), Expect = 7e-85
Identities = 132/512 (25%), Positives = 220/512 (42%), Gaps = 53/512 (10%)
Query: 271 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHI 330
G V+ RF P P+G LHIGHA+A ++ AK+ G +R+DDT+P E D I
Sbjct: 89 AKMGEVVMRFAPNPSGPLHIGHARAAILNHEYAKKYDGKLIIRFDDTDPRRVDPEAYDMI 148
Query: 331 EEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWR 390
E ++W+G + ++ Y SD + Y+ +LI G AYV PEE +E R + R
Sbjct: 149 LEDLEWLGVKWDEVVYQSDRIETYYDYTRKLIEMGKAYVCDCRPEEFRELRNRGEACHCR 208
Query: 391 DRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWC 450
DR + E+L+ +E+M G+ E G +R+K D+++ N + D + +RI TPHP GDK+
Sbjct: 209 DRSVEENLERWEEMLEGKEEGGSVVVRVKTDLKHKNPAIRDWVIFRIVKTPHPRTGDKYR 268
Query: 451 IYPSYDYAHCIVDSIENITHSLCTLEF--ETRRASYFWLLHALGLYQPYVWEYSRLNVSN 508
+YP+ D++ I D + +TH L + R+ Y + + W +++
Sbjct: 269 VYPTMDFSVAIDDHLLGVTHVLRGKDHIDNRRKQEYIYRYFGWEPPEFIHWGRLKIDDVR 328
Query: 509 TVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLD 568
+ + ++ +Y GWDDP L TL +RRRG+ +I F+ IG+ +D +
Sbjct: 329 ALSTSSARKGILRGEYS-GWDDPRLPTLRAIRRRGIRPEAIRKFMLSIGVKINDVTMSWK 387
Query: 569 RLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPF 628
+ R+ +++ A R + NP+K+ I + + P +
Sbjct: 388 NIYALNRKIIDEEARRYFFIWNPVKIEIVGLPEPKRVER-----PLHPDHPEIGERVLIL 442
Query: 629 SNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPS 688
+Y+ D + V L A + ++ L E + R
Sbjct: 443 RGEIYVPKDDLEEGV----------EPVRLMDAVNVIYSKKELRYHSEGLEGAR------ 486
Query: 689 KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAY 748
K K +HW+ ++V+V + PD+ +V E
Sbjct: 487 KLGKSI--IHWLPAKD----AVKVKV---------------------IMPDASIV--EGV 517
Query: 749 AEPSLHSAAVGDRFQFERLGYFAVDKDSTPEK 780
E VGD QFER G+ +D
Sbjct: 518 IEADASELEVGDVVQFERFGFARLDSADKDGM 549
>gnl|CDD|178772 PLN03233, PLN03233, putative glutamate-tRNA ligase; Provisional.
Length = 523
Score = 276 bits (708), Expect = 6e-84
Identities = 164/505 (32%), Positives = 265/505 (52%), Gaps = 27/505 (5%)
Query: 274 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEI 333
G ++TRFPPEP+GYLHIGHAKA ++ A+ G LR+DDTNP EK E+ + I E
Sbjct: 10 GQIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIED 69
Query: 334 VQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRP 393
+ + +P +++TSDYF+ + A+ LI G AY+D EE+K+ R + S R++
Sbjct: 70 LGKIEIKPDSVSFTSDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQS 129
Query: 394 IAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYP 453
E+L++F++M +G+ E G LR K DMQ+DN + D + +R TPH +G + YP
Sbjct: 130 PEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAYKAYP 189
Query: 454 SYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSK 513
+YD A IVDSIE +TH+L T E++ R A +FW+ ALGL +P + ++R+N NTV+SK
Sbjct: 190 TYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRIHAFARMNFMNTVLSK 249
Query: 514 RKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY- 572
RKL + V N +V GWDD T+ G+ RRG+ ++ F+ G SR ++ LD ++
Sbjct: 250 RKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASR--RVVNLDWAKFW 307
Query: 573 -HIREELNKTAPRTMVV--LNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFS 629
++E++K A R M + + + +TN + D + K P
Sbjct: 308 AENKKEIDKRAKRFMAIDKADHTALTVTNADEEA----------DFAFSETDCHPKDPGF 357
Query: 630 NVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSK 689
+ D + + D + G+ ++L I+ +++ D E ++ +K
Sbjct: 358 GKRAMRICDEVLLEKADTEDIQLGEDIVLLRWGVIEISKI--DGDLEGHFIPDGDFKAAK 415
Query: 690 KTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYA 749
K + W+A+ S + + E F+ L E E D + +NPD+ +
Sbjct: 416 KK-----ISWIADVSDNIPVVLSE---FDNLIIKEKLEEDDKFEDFINPDTLAET-DVIG 466
Query: 750 EPSLHSAAVGDRFQFERLGYFAVDK 774
+ L + D Q ER G++ VD+
Sbjct: 467 DAGLKTLKEHDIIQLERRGFYRVDR 491
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 271 bits (695), Expect = 2e-81
Identities = 152/520 (29%), Positives = 241/520 (46%), Gaps = 61/520 (11%)
Query: 271 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEK--KEYID 328
G V+ RF P P+G LH+GHA+A ++ AK GG LR++DT+P ++ E D
Sbjct: 97 AEKGKVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYD 156
Query: 329 HIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSP 388
I E ++W+G + ++ SD + YE A +LI G AYV PEE KE R+ P
Sbjct: 157 MILEDLKWLGVKWDEVVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCP 216
Query: 389 WRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDK 448
RD+ E+L+L+E M +G +EG+A +R+K D+++ N ++ D +A+RI TPHP GDK
Sbjct: 217 HRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKTPHPRVGDK 276
Query: 449 WCIYPSYDYAHCIVDSIENITHSLCTLEFE--TRRASYFWLLHALGLYQPYVWEYSRLNV 506
+ ++P+Y++A + D + +TH L + T + Y + G P Y RL +
Sbjct: 277 YRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRY--IYDYFGWEYPETIHYGRLKI 334
Query: 507 SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 566
V+S K+ + GWDDP L TL LRRRG+ +I + +G+ +D+ I
Sbjct: 335 EGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATIS 394
Query: 567 LDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTI---MHLDAKRWPDAQADDASAF 623
+ L R+ ++ A R V +P+++ I E +H PD
Sbjct: 395 WENLYAINRKLIDPIANRYFFVRDPVELEIEGAEPLEAKIPLH------PD---RPERGE 445
Query: 624 YKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRA 683
++P VY+ D A GK V L F ++ I + +
Sbjct: 446 REIPVGGKVYVSSDDLE----------AEGKMVRLMDLFNVE----ITGVSVDKARYHSD 491
Query: 684 EYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVV 743
+ + ++K K ++ WV E V VR+ L PD +
Sbjct: 492 DLEEARKNKAP-IIQWVPEDES------VPVRV-------------------LKPDGGDI 525
Query: 744 IPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVF 783
E AEP + V D QFER G+ +D +++V
Sbjct: 526 --EGLAEPDVADLEVDDIVQFERFGFVRIDS-VEDDEVVA 562
>gnl|CDD|185676 cd00807, GlnRS_core, catalytic core domain of glutaminyl-tRNA
synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic
core domain. These enzymes attach Gln to the appropriate
tRNA. Like other class I tRNA synthetases, they
aminoacylate the 2'-OH of the nucleotide at the 3' end
of the tRNA. The core domain is based on the Rossman
fold and is responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate. GlnRS contains
the characteristic class I HIGH and KMSKS motifs, which
are involved in ATP binding. These enzymes function as
monomers. Archaea and most bacteria lack GlnRS. In these
organisms, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme.
Length = 238
Score = 251 bits (644), Expect = 3e-78
Identities = 93/143 (65%), Positives = 110/143 (76%)
Query: 442 HPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEY 501
H GDKWCIYP+YD+AH IVDSIE ITHSLCTLEFE RR SY+WL AL LY+P+ WE+
Sbjct: 96 HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEF 155
Query: 502 SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 561
SRLN++ TVMSKRKL LV YVDGWDDP L TL GLRRRGVT +I F+ G+S++
Sbjct: 156 SRLNLTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKA 215
Query: 562 DSLIRLDRLEYHIREELNKTAPR 584
DS I D+LE +R++LN TAPR
Sbjct: 216 DSTIDWDKLEACVRKDLNPTAPR 238
Score = 192 bits (491), Expect = 2e-56
Identities = 64/106 (60%), Positives = 86/106 (81%)
Query: 275 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 334
V+TRFPPEPNGYLHIGHAKA+ ++FG AK+ GG C LR+DDTNPE E++EY+D I+E V
Sbjct: 1 KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDV 60
Query: 335 QWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEY 380
+W+G +P+K+TY SDYF +LYE A +LI++G AYV H+T ++ Y
Sbjct: 61 KWLGIKPYKVTYASDYFDQLYEYAEQLIKKGKAYVHHRTGDKWCIY 106
>gnl|CDD|218149 pfam04558, tRNA_synt_1c_R1, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 1. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 164
Score = 224 bits (574), Expect = 3e-69
Identities = 84/163 (51%), Positives = 110/163 (67%), Gaps = 1/163 (0%)
Query: 8 DKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKY 67
E+L+LF KIGLD++ AK T+ N KV+A+L A+I EA T GC+++ G LLY +ATK
Sbjct: 2 SVEELLKLFSKIGLDEKKAKETLKNKKVSASLLAIIAEAGATSGCDKKTGALLYNLATKL 61
Query: 68 PTNALVHRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSED 127
N + HRP ++ YIV+ K+KT Q++AA + + GSE F+V EFEEACGVGV V+ ED
Sbjct: 62 KGNEVPHRPLIVSYIVNGKLKTTLQVDAALKYLKANGSEAFDVAEFEEACGVGVVVTPED 121
Query: 128 IELTVNEVFEENKNTILELRYR-TNVGDLFAHVRKRLPWADPK 169
+E V + EENK ILE RY+ NVG L R L WADPK
Sbjct: 122 VERAVADYIEENKEEILEKRYKLFNVGLLLVKARPELKWADPK 164
>gnl|CDD|217810 pfam03950, tRNA-synt_1c_C, tRNA synthetases class I (E and Q),
anti-codon binding domain. Other tRNA synthetase
sub-families are too dissimilar to be included. This
family includes only glutamyl and glutaminyl tRNA
synthetases. In some organisms, a single glutamyl-tRNA
synthetase aminoacylates both tRNA(Glu) and tRNA(Gln).
Length = 174
Score = 177 bits (450), Expect = 2e-51
Identities = 77/195 (39%), Positives = 102/195 (52%), Gaps = 24/195 (12%)
Query: 582 APRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRM 641
APR M VL+P+KVVI N G + P + KVPFS +YIE DF+
Sbjct: 1 APRYMAVLDPVKVVIENYPEGEEEEAEVPNHPK---NPELGTRKVPFSREIYIEREDFK- 56
Query: 642 KDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDP---SKKTKPKGVLH 698
L PG+ V L A+ IK TEV+ D+ + + YD K KG++H
Sbjct: 57 -------RLKPGEEVRLMGAYNIKVTEVV-KDEDGNVTELHCTYDGDSLGGARKVKGIIH 108
Query: 699 WVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAV 758
WV+ + + EVRL+++LF E+ D+L LNPDS VI E AEP+L + V
Sbjct: 109 WVSAD----DAVPAEVRLYDRLFKDEDD---FDFL--LNPDSLKVITEGLAEPALANLKV 159
Query: 759 GDRFQFERLGYFAVD 773
GD QFER+GYF VD
Sbjct: 160 GDIVQFERIGYFRVD 174
>gnl|CDD|185672 cd00418, GlxRS_core, catalytic core domain of glutamyl-tRNA and
glutaminyl-tRNA synthetase. Glutamyl-tRNA
synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS)
cataytic core domain. These enzymes attach Glu or Gln,
respectively, to the appropriate tRNA. Like other class
I tRNA synthetases, they aminoacylate the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. These enzymes function as monomers. Archaea,
cellular organelles, and some bacteria lack GlnRS. In
these cases, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme. The discriminating form of GluRS
differs from GlnRS and the non-discriminating form of
GluRS in their C-terminal anti-codon binding domains.
Length = 230
Score = 99.9 bits (249), Expect = 1e-23
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 335
V+TRF P P GYLHIGHA+ +F A++ GG LR +DT+PE + EY++ I E ++
Sbjct: 2 VVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLK 61
Query: 336 WMG--WEPFKITYTSDYFQELYELAVELIRRG 365
W+G W+ SD F A ELI++G
Sbjct: 62 WLGLDWDE-GPYRQSDRFDLYRAYAEELIKKG 92
Score = 83.3 bits (206), Expect = 7e-18
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 19/138 (13%)
Query: 451 IYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVS-NT 509
YP Y++ H + D++ ITH L + WL ALG P + + RL + T
Sbjct: 93 GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDGT 152
Query: 510 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD--SLIRL 567
+SKRKLN TL LRRRG ++ ++ IG S+ D L L
Sbjct: 153 KLSKRKLN----------------TTLRALRRRGYLPEALRNYLALIGWSKPDGHELFTL 196
Query: 568 DRLEYHIREELNKTAPRT 585
+ + E +A T
Sbjct: 197 EEMIAAFSVERVNSADAT 214
>gnl|CDD|183594 PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional.
Length = 445
Score = 93.4 bits (233), Expect = 5e-20
Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 10/144 (6%)
Query: 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 335
V+TRF P P GYLH+G+A+ +++ A++ GG LR DDT+ E K+EY D I E ++
Sbjct: 3 VITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDLK 62
Query: 336 WMGWEPFKITYTSDYFQELYELAVE-LIRRGHAYVDHQTPEEIKEYREKKMNS----PWR 390
W+G + SD F + Y+ A E L G Y ++TPEE+ E + K S P
Sbjct: 63 WLGINWDRTFRQSDRF-DRYDEAAEKLKAAGRLYPCYETPEEL-ELKRKIQLSRGLPPIY 120
Query: 391 DRPIAESLKLFEDMRNGRIEEGKA 414
DR +LKL E+ + EG+
Sbjct: 121 DR---AALKLTEEEKAALEAEGRK 141
>gnl|CDD|185682 cd09287, GluRS_non_core, catalytic core domain of
non-discriminating glutamyl-tRNA synthetase.
Non-discriminating Glutamyl-tRNA synthetase (GluRS)
cataytic core domain. These enzymes attach Glu to the
appropriate tRNA. Like other class I tRNA synthetases,
they aminoacylate the 2'-OH of the nucleotide at the 3'
end of the tRNA. The core domain is based on the Rossman
fold and is responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate. It contains the
characteristic class I HIGH and KMSKS motifs, which are
involved in ATP binding. These enzymes function as
monomers. Archaea and most bacteria lack GlnRS. In these
organisms, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme.
Length = 240
Score = 87.4 bits (217), Expect = 3e-19
Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 4/145 (2%)
Query: 442 HPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFE--TRRASYFWLLHALGLYQPYVW 499
HP G K+ ++P+ ++A + D + +TH L + T + Y + G P
Sbjct: 98 HPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRY--IYEYFGWEYPETI 155
Query: 500 EYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGIS 559
+ RL + +S K+ + + +GWDDP L TL LRRRG+ +I F+ +G+
Sbjct: 156 HWGRLKIEGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVK 215
Query: 560 RSDSLIRLDRLEYHIREELNKTAPR 584
++D+ I + L R+ ++ A R
Sbjct: 216 QTDATISWENLYAINRKLIDPRANR 240
Score = 87.0 bits (216), Expect = 4e-19
Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 275 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEK--KEYIDHIEE 332
V+ RF P PNG LH+GHA+A ++ AK GG LR+DDT+P ++ E D I E
Sbjct: 1 KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPE 60
Query: 333 IVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQT 373
++W+G + ++ SD + YE A +LI G AYV +T
Sbjct: 61 DLEWLGVKWDEVVIASDRIELYYEYARKLIEMGGAYVHPRT 101
>gnl|CDD|232986 TIGR00464, gltX_bact, glutamyl-tRNA synthetase, bacterial family.
The glutamyl-tRNA synthetases of the eukaryotic cytosol
and of the Archaea are more similar to glutaminyl-tRNA
synthetases than to bacterial glutamyl-tRNA synthetases.
This model models just the bacterial and mitochondrial
forms of the enzyme. In many species, the charging of
tRNA(gln) proceeds first through misacylation with Glu
and then transamidation. For this reason, glutamyl-tRNA
synthetases may act on both tRNA(gln) and tRNA(glu).
This model is highly specific. Proteins with positive
scores below the trusted cutoff may be fragments rather
than full-length sequences [Protein synthesis, tRNA
aminoacylation].
Length = 470
Score = 82.8 bits (205), Expect = 1e-16
Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 16/207 (7%)
Query: 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 335
V TRF P P GYLHIG A+ ++ AK GG LR +DT+ E +E + I E ++
Sbjct: 2 VRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFLLRIEDTDLERNIEEAEEAILEGLK 61
Query: 336 WMG--WE--PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRD 391
W+G W+ P+ + D +++ + EL+ G AY + + E ++ RE++ +
Sbjct: 62 WLGISWDEGPYYQSQRLDIYKKYAK---ELLEEGLAYRCYCSKERLERLREEQKANKETP 118
Query: 392 RPIAESLKLFEDMRNGRIEEG-KATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWC 450
R L + + +G +R K Q + D + I F D +
Sbjct: 119 RYDRHCRNLHNEEIENALAKGIPPVVRFKIP-QEGVVSFNDQVRGEITFQ--NSELDDFV 175
Query: 451 IY-----PSYDYAHCIVDSIENITHSL 472
I P+Y++A + D + ITH +
Sbjct: 176 ILKSDGSPTYNFAVVVDDYLMKITHVI 202
>gnl|CDD|184889 PRK14895, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 513
Score = 74.0 bits (181), Expect = 1e-13
Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 275 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 334
NV+TRF P P G+LHIG A+ ++ A+ G LR +DT+ E KE ++ I +
Sbjct: 4 NVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGL 63
Query: 335 QWMG--WEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKM------- 385
+W+G W ++ + S E A++L++ G AY EEI+ R++ +
Sbjct: 64 KWLGLDWNG-EVIFQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFI 122
Query: 386 -NSPWRDR 392
NS WRD+
Sbjct: 123 FNSEWRDK 130
>gnl|CDD|234953 PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.
Length = 476
Score = 69.4 bits (171), Expect = 3e-12
Identities = 53/164 (32%), Positives = 77/164 (46%), Gaps = 29/164 (17%)
Query: 275 NVLTRFPPEPNGYLHIGHAK-AMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEI 333
V TRF P P GYLHIG A+ A+F ++ A+ GG LR +DT+ E +E + I E
Sbjct: 4 KVRTRFAPSPTGYLHIGGARTALF-NWLFARHHGGKFILRIEDTDQERSTEEAEEAILEG 62
Query: 334 VQWMG--W--EPFKITYTSDYFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKK 384
++W+G W P Y Y Q ++Y E A +L+ G AY + TPEE++ RE++
Sbjct: 63 LKWLGLDWDEGPDGGPY-GPYRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQ 121
Query: 385 M--------NSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMK 419
+ RD E R+ G +R K
Sbjct: 122 RAAGEPPRYDGRCRDLTKEEVAA--------RLAAGEPPVIRFK 157
>gnl|CDD|173905 cd00808, GluRS_core, catalytic core domain of discriminating
glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA
synthetase (GluRS) catalytic core domain . The
discriminating form of GluRS is only found in bacteria
and cellular organelles. GluRS is a monomer that
attaches Glu to the appropriate tRNA. Like other class
I tRNA synthetases, GluRS aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 239
Score = 61.8 bits (151), Expect = 1e-10
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 275 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 334
V TRF P P G+LHIG A+ ++ A++ GG LR +DT+ E E + I E +
Sbjct: 1 KVRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEAL 60
Query: 335 QWMGWEP 341
+W+G +
Sbjct: 61 KWLGLDW 67
>gnl|CDD|235573 PRK05710, PRK05710, glutamyl-Q tRNA(Asp) synthetase; Reviewed.
Length = 299
Score = 61.8 bits (151), Expect = 3e-10
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 278 TRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWM 337
RF P P+G LH G A + A+ GG LR +D +P E D I ++W+
Sbjct: 8 GRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWL 67
Query: 338 G--WEPFKITYTSDYFQELYELAVE-LIRRGHAY 368
G W+ + Y S + Y A++ L +G Y
Sbjct: 68 GLHWDG-PVLYQSQRH-DAYRAALDRLRAQGLVY 99
>gnl|CDD|237094 PRK12410, PRK12410, glutamylglutaminyl-tRNA synthetase;
Provisional.
Length = 433
Score = 59.3 bits (144), Expect = 4e-09
Identities = 51/202 (25%), Positives = 93/202 (46%), Gaps = 23/202 (11%)
Query: 279 RFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NPEAEKKEYIDHIEEIV 334
RF P P G +HIG+ +A ++ +AK++ +R +DT N E + KE I EI+
Sbjct: 3 RFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKE----ILEIL 58
Query: 335 QWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--KKMNSPWRDR 392
G K+ Y S+ + ++A +L+ A+ + EE++ +E K P+R
Sbjct: 59 NLFGISWDKLVYQSENLKFHRQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYD 118
Query: 393 PIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIY 452
E+L+ E + + +R+K+ +F D I + F P D + I
Sbjct: 119 GTCENLEDDEVLNCNK----PFVVRLKKPNHTMSFT--DAIKGEVSF--EPDEIDSFVIL 170
Query: 453 -----PSYDYAHCIVDSIENIT 469
P+Y++A + D + +I+
Sbjct: 171 RADKTPTYNFACAVDDMLYDIS 192
>gnl|CDD|178234 PLN02627, PLN02627, glutamyl-tRNA synthetase.
Length = 535
Score = 56.3 bits (136), Expect = 4e-08
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 9/122 (7%)
Query: 270 EVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDH 329
E GG V RF P P G LH+G A+ ++ A+ +GG LR +DT+ KE +
Sbjct: 40 ESKGGPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEA 99
Query: 330 IEEIVQWMG--WE--PFKITYTSDYFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEY 380
+ ++W+G W+ P Y Q +Y + A +L+ GH Y T EE++
Sbjct: 100 VLRDLKWLGLDWDEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAM 159
Query: 381 RE 382
+E
Sbjct: 160 KE 161
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 48.1 bits (115), Expect = 4e-07
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 170 IVKQLIDARMYELLGERTAADIEKLSKK-KEKKEKKEKPEKDEDKKFANDAPVQLPEEDL 228
K +D ++ ELLG +T AD+ K KK K+KK + K A D +
Sbjct: 1 DFKPEVDMQILELLGPKTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSEGAMFMEG 60
Query: 229 FPISNFPPPEENYKQ 243
F F P ENY Q
Sbjct: 61 FLGEKFHKPGENYPQ 75
>gnl|CDD|173912 cd02156, nt_trans, nucleotidyl transferase superfamily. nt_trans
(nucleotidyl transferase) This superfamily includes the
class I amino-acyl tRNA synthetases, pantothenate
synthetase (PanC), ATP sulfurylase, and the
cytidylyltransferases, all of which have a conserved
dinucleotide-binding domain.
Length = 105
Score = 46.4 bits (110), Expect = 2e-06
Identities = 27/67 (40%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Query: 278 TRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPE------AEKKEYIDHIE 331
RFP EP GYLHIGHAK + AK C +R DD P E +E + IE
Sbjct: 2 ARFPGEP-GYLHIGHAKLI----CRAKGIADQCVVRIDDNPPVKVWQDPHELEERKESIE 56
Query: 332 EIVQWMG 338
E + G
Sbjct: 57 EDISVCG 63
Score = 34.1 bits (78), Expect = 0.062
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 462 VDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNVSNTVMSKRK 515
+SIE S+C +F+ R Y W+ + L P E RLN+ TVMSKRK
Sbjct: 52 KESIEED-ISVCGEDFQQNRELYRWVKDNITLPVDPEQVELPRLNLETTVMSKRK 105
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 45.9 bits (109), Expect = 7e-06
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 18/78 (23%)
Query: 278 TRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTN-------------P 319
T PNGYLHIGH + + LA+ C DD
Sbjct: 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENA 61
Query: 320 EAEKKEYIDHIEEIVQWM 337
+A + +I+ I+E V++M
Sbjct: 62 KAFVERWIERIKEDVEYM 79
>gnl|CDD|234370 TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase.
This protein resembles a shortened glutamyl-tRNA
ligase, but its purpose is to modify tRNA(Asp) at a
queuosine position in the anticodon rather than to
charge a tRNA with its cognate amino acid [Protein
synthesis, tRNA and rRNA base modification].
Length = 271
Score = 43.7 bits (104), Expect = 2e-04
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 279 RFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMG 338
RF P P+G LH G A + A+ GG +R +D +P E D I ++ G
Sbjct: 4 RFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYG 63
Query: 339 --W-EPFKITYTSDYFQELYELAVE-LIRRGHAY 368
W + Y S LY+ A++ L+ G AY
Sbjct: 64 LHWDGE--VVYQSQR-HALYQAALDRLLAAGLAY 94
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 32.5 bits (74), Expect = 0.83
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 184 GERTAADIEKLSKKKEKKEKKEKPEKDEDKK----FANDAPVQLPEEDLFPISNFPPPEE 239
GER+ ++ E K+KEK+++ +K +DED+ ++PV EE+ P P++
Sbjct: 278 GERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPV--EEEESEEPEPPPLPKK 335
>gnl|CDD|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy
production and conversion].
Length = 387
Score = 32.6 bits (75), Expect = 0.86
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Query: 315 DDTNPEAEKKEYID--------HIEEIVQWMGWEPFKITYTSDYFQELYELAVE 360
+ PE K +D E+ +G E + +D ++LY+L VE
Sbjct: 135 AEKTPEKIVKVSVDPLTGLRPYQARELAFKLGLEGELVKQVADIIKKLYKLFVE 188
>gnl|CDD|235053 PRK02610, PRK02610, histidinol-phosphate aminotransferase;
Provisional.
Length = 374
Score = 32.4 bits (74), Expect = 0.91
Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 16/59 (27%)
Query: 700 VAEP-SPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAA 757
V P SP NPL AEL+ WL L D VVI EAY E S +
Sbjct: 174 VVHPNSPTGNPL--------------TAAELE-WLRSLPEDILVVIDEAYFEFSQTTLV 217
>gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a
subclass of decarboxylating condensing enzymes,
including beta-ketoacyl [ACP] synthase, type I and II
and polyketide synthases.They are characterized by the
utlization of acyl carrier protein (ACP) thioesters as
primer substrates, as well as the nature of their active
site residues.
Length = 407
Score = 32.0 bits (73), Expect = 1.1
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 356 ELAVELIRRGHAYV------DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRI 409
+LAVE IR G A + + E + + S + P S E R+G +
Sbjct: 170 DLAVEAIRSGKADIVVVGGVEDPLEEGLSGFANMGALSTAEEEPEEMSRPFDET-RDGFV 228
Query: 410 E-EGKATLRMKQD 421
E EG L +++
Sbjct: 229 EAEGAGVLVLERA 241
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 31.8 bits (73), Expect = 1.3
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 171 VKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDKK 214
+++ + AR+ + L +T A EK + K KK ++ EK E +K
Sbjct: 364 IEEPLKARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEK 407
>gnl|CDD|233183 TIGR00916, 2A0604s01, protein-export membrane protein, SecD/SecF
family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY
proteins form the protein translocation appartus in
prokaryotes. This family is specific for the SecD and
SecF proteins [Protein fate, Protein and peptide
secretion and trafficking].
Length = 192
Score = 31.1 bits (71), Expect = 1.6
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 544 VTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRT 585
+T I + IG S D+++ DR IREEL K RT
Sbjct: 98 LTLPGIAGLLTIIGYSVDDTVVIFDR----IREELRKYKGRT 135
>gnl|CDD|233213 TIGR00966, 3a0501s07, protein-export membrane protein SecF. This
bacterial protein is always found with the homologous
protein-export membrane protein SecD. In numerous
lineages, this protein occurs as a SecDF fusion protein
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 246
Score = 31.1 bits (71), Expect = 1.8
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 544 VTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGT 603
V T++ A + IG S +D+++ DR IRE L K + + I S T
Sbjct: 149 VNLTTVAALLTIIGYSINDTVVVFDR----IRENLRKY--TRKTFTEVINLSINQTLSRT 202
Query: 604 IM 605
I
Sbjct: 203 IN 204
>gnl|CDD|218255 pfam04769, MAT_Alpha1, Mating-type protein MAT alpha 1. This
family includes Saccharomyces cerevisiae mating type
protein alpha 1. Mat alpha 1 is a transcription
activator which activates mating-type alpha-specific
genes. MAT alpha 1 and MCM 1 bind cooperatively to PQ
elements upstream of alpha-specific genes. Alpha 1
interacts in vivo with STE12, linking expression of
alpha-specific genes to the alpha-pheromone (pfam04648)
response pathway.
Length = 200
Score = 30.9 bits (70), Expect = 1.9
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 687 PSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPE 746
P K+ + W A+P+ + L +V + + A L+ +L+ P + P
Sbjct: 65 PQKEASNFITILWQADPNKNLWSLMAKVYSSIRDQLGKKKAPLNQFLAFACPHMGMPDPS 124
Query: 747 AYAE 750
AY E
Sbjct: 125 AYLE 128
>gnl|CDD|191653 pfam06962, rRNA_methylase, Putative rRNA methylase. This family
contains a number of putative rRNA methylases. Note that
many family members are hypothetical proteins.
Length = 138
Score = 29.9 bits (68), Expect = 2.3
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 347 TSDYFQELYELAVELIRRGHAYVDHQTPEEIK 378
T + ++ VELI H +D PE +K
Sbjct: 15 TKEKLEQAGLSEVELILDSHENIDEYIPEPVK 46
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 31.2 bits (70), Expect = 2.4
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 190 DIEKLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNFPP 236
D+ + KK +K +KKEK EK++++ V+ + L + + P
Sbjct: 191 DVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPA 237
Score = 29.3 bits (65), Expect = 9.7
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 188 AADIEKLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNFP------PPEENY 241
A + +K K K+KK++KEK EK + KK + P+ N PP +Y
Sbjct: 271 AEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQPVQNGAVEEEPLPPMSSY 330
Query: 242 K 242
K
Sbjct: 331 K 331
>gnl|CDD|224356 COG1439, COG1439, Predicted nucleic acid-binding protein, consists
of a PIN domain and a Zn-ribbon module [General function
prediction only].
Length = 177
Score = 30.5 bits (69), Expect = 2.5
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Query: 130 LTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWADPKIVKQLID-ARMYELLGERTA 188
T V EE I + R+ + L + ++ + VK++ + A+ LG +
Sbjct: 30 YTTPSVVEE----IKDRESRSLLELLLESGKVKVAEPSTEYVKEVREAAKKTGDLGNLSP 85
Query: 189 ADIEKLSKKKEKKEKKEKPEKDEDKKFANDA 219
DIE L+ E E+ + +D N A
Sbjct: 86 TDIEVLALALELGEEVQVALATDDYSVQNVA 116
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 31.1 bits (71), Expect = 2.7
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 27/97 (27%)
Query: 281 PPEPNGYLHIGHAKA-----MFVDFGLAKERGGY--CYLRYDDTN-----PEAEK----- 323
P PNG H+GH ++ + GY +L D + +AEK
Sbjct: 13 LPYPNGPPHLGHLYTYLAADVYARY---LRLRGYEVFFLTGTDEHGTKIELKAEKEGITP 69
Query: 324 KEYIDHIEEIVQWMGWEPFKITY------TSDYFQEL 354
+E +D E + + ++ I++ TS +EL
Sbjct: 70 QELVDKNHEEFKEL-FKALNISFDNFIRTTSPEHKEL 105
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 30.2 bits (68), Expect = 3.1
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 190 DIEKLSKK--KEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNFPPPEENYKQVHTE 247
D+E SKK K+KK K + + K ++PE +S+ EEN K+V E
Sbjct: 42 DVEIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYE 101
Query: 248 IPFSDGSVLICCNTKEVLD 266
+P + N ++V+D
Sbjct: 102 LPKVQNTAA-EVNHEDVID 119
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 30.7 bits (70), Expect = 3.4
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 182 LLGERTAADIEKLSKKKEKKEKKEKPEKDEDKKFA 216
L G + A K +K +K+++E+ ++ + K FA
Sbjct: 402 LTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFA 436
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 30.0 bits (68), Expect = 3.6
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 8/38 (21%)
Query: 185 ERTAADIEKLSK--------KKEKKEKKEKPEKDEDKK 214
+ A +IEK+ K K +KK+ K+K +KD+DKK
Sbjct: 65 KELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKK 102
Score = 28.9 bits (65), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 195 SKKKEKKEKKEKPEKDEDKKFANDAP 220
SKKK+ K+K +K +K +DK D
Sbjct: 91 SKKKKDKDKDKKDDKKDDKSEKKDEK 116
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 29.4 bits (67), Expect = 3.6
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 181 ELLGERTAADIEKLSKKKEKKEKKEKPE--KDEDKK 214
LL ++ EK KK EK + K + + K E+ K
Sbjct: 61 ALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPK 96
>gnl|CDD|219755 pfam08231, SYF2, SYF2 splicing factor. Proteins in this family are
involved in cell cycle progression and pre-mRNA
splicing.
Length = 157
Score = 29.2 bits (66), Expect = 4.3
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 171 VKQLIDA-RMYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLF 229
+Q ID R L + +A + EK KKK+KK+ K D + DA + + L
Sbjct: 1 EEQGIDFERKRAL--DWSAEESEKWDKKKKKKKNK-DDFGFND--YEQDALYRAYKRRLK 55
Query: 230 PISNFPPPEENY-KQVHTEIPFSDGSVLICCNT 261
N P E Y KQ + ++
Sbjct: 56 ---NLKPDLEEYEKQKEAVGEKFYATFYRTADS 85
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 30.4 bits (69), Expect = 5.0
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 280 FP-PEPNGYLHIGHAKAMF-VDFGLAKER 306
FP P NG LH+GHA ++ ++F A R
Sbjct: 51 FPYPYMNGLLHLGHAFSLSKLEFAAAYHR 79
>gnl|CDD|226987 COG4640, COG4640, Predicted membrane protein [Function unknown].
Length = 465
Score = 29.9 bits (67), Expect = 5.4
Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 2/114 (1%)
Query: 100 FASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHV 159
+ ++N +V E E V + S D + E F K+ +++ G +
Sbjct: 236 VRQSNTKNVDVTEDLEEDNKTVTLKS-DTKDNDAEKFITIKDIGKKIKDSKTYGPYPQN- 293
Query: 160 RKRLPWADPKIVKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDK 213
+A K + I ++ EL+ ++ + + + PEK+E +
Sbjct: 294 TSITIYASGKAKGKTIKSKETELIKAYDLKYNPQIYLDFDSETIEYYPEKNEGE 347
>gnl|CDD|227674 COG5384, Mpp10, U3 small nucleolar ribonucleoprotein component
[Translation, ribosomal structure and biogenesis].
Length = 569
Score = 30.0 bits (67), Expect = 5.4
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 176 DARMYE-LLGERTAADIEKLSKKKEKKEKKEKPEKDEDKKFAND-APVQLPEEDLF 229
+A YE + T ++K S K+ KE +E E++ D + EED
Sbjct: 206 EAIYYEDFFDKPTKEPVKKHSDVKDPKEDEELDEEEHDSAMDKVKLDLFADEEDEP 261
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 28.0 bits (63), Expect = 5.5
Identities = 8/17 (47%), Positives = 15/17 (88%)
Query: 196 KKKEKKEKKEKPEKDED 212
++EKKE++E+ E+D+D
Sbjct: 66 AEEEKKEEEEEEEEDDD 82
>gnl|CDD|238922 cd01947, Guanosine_kinase_like, Guanosine kinase-like sugar
kinases. Found in bacteria and archaea, the guanosine
kinase-like group is part of the ribokinase/pfkB sugar
kinase superfamily. Its oligomerization state is unknown
at this time.
Length = 265
Score = 29.7 bits (67), Expect = 5.8
Identities = 23/105 (21%), Positives = 31/105 (29%), Gaps = 18/105 (17%)
Query: 184 GERTAADIEKLSKKKEKKEKKEKPEKDE-DKKFANDAPV-----QLPEEDLFPISNFPPP 237
GERT + ++ + P DE D F A V + E I P
Sbjct: 99 GERTITVP-----GERLEDDLKWPILDEGDGVFITAAAVDKEAIRKCRETKLVILQVTPR 153
Query: 238 EENYKQVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPP 282
+ IP +LI LD V + FP
Sbjct: 154 VRVDELNQALIPL---DILIGSR----LDPGELVVAEKIAGPFPR 191
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 28.9 bits (65), Expect = 5.8
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 15/61 (24%)
Query: 158 HVRKRLPWA----DPKIVKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDK 213
VR R+ A + KIVKQ++ + + K KKK+KK+KK+K K K
Sbjct: 84 CVRDRIVRAFLVEEQKIVKQVLKEK------AKQ-----KKQKKKKKKKKKKKTSKKAAK 132
Query: 214 K 214
K
Sbjct: 133 K 133
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 28.7 bits (64), Expect = 5.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 192 EKLSKKKEKKEKKEKPEKDEDKK 214
EK KKK+K +K +KP+K K
Sbjct: 98 EKPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|218457 pfam05135, Phage_connect_1, Phage gp6-like head-tail connector
protein. This family of proteins contain head-tail
connector proteins related to gp6 from bacteriophage
HK97. A structure of this protein shows similarity to
gp15 a well characterized connector component of
bacteriophage SPP1.
Length = 95
Score = 28.1 bits (63), Expect = 6.0
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 311 YLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELI 362
LR DD + + + I EE ++ + Y + L +LAV L+
Sbjct: 6 LLRIDDDSDDDLLELLIKAAEEYIKN--YIGRDFDYDPEEIPPLLKLAVLLL 55
>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2. This family consists
of several Barren protein homologues from several
eukaryotic organisms. In Drosophila Barren (barr) is
required for sister-chromatid segregation in mitosis.
barr encodes a novel protein that is present in
proliferating cells and has homologues in yeast and
human. Mitotic defects in barr embryos become apparent
during cycle 16, resulting in a loss of PNS and CNS
neurons. Centromeres move apart at the
metaphase-anaphase transition and Cyclin B is degraded,
but sister chromatids remain connected, resulting in
chromatin bridging. Barren protein localises to
chromatin throughout mitosis. Colocalisation and
biochemical experiments indicate that Barren associates
with Topoisomerase II throughout mitosis and alters the
activity of Topoisomerase II. It has been suggested that
this association is required for proper chromosomal
segregation by facilitating the decatenation of
chromatids at anaphase. This family forms one of the
three non-structural maintenance of chromosomes (SMC)
subunits of the mitotic condensation complex along with
Cnd1 and Cnd3.
Length = 719
Score = 30.1 bits (68), Expect = 6.2
Identities = 37/172 (21%), Positives = 62/172 (36%), Gaps = 36/172 (20%)
Query: 104 GSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRL 163
G + E + +E ++V D ++T + ++ + N F R +
Sbjct: 362 GGDAEEFEAEKEPM---LKVCRVDRQVTEII--DGDEPVDYCISLSYNELSYFDP-RLQK 415
Query: 164 PWADP---KIVKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDKKFANDAP 220
WA P K R + R AAD K + +K+KK KE E D F
Sbjct: 416 NWAGPEHWKF-------RRTKRPEPRAAAD-TKSAAEKQKKRAKEPFEID----FGAPL- 462
Query: 221 VQLPEEDLFPISNFPPPEENYKQVHTEIPFSDGSVLICCNTKEVL--DKHLE 270
E++ F PP+ N +++ +T+ +L D H E
Sbjct: 463 -----EEIDFEVIFQPPKANSTLSKSKLQKK-------WDTRTLLPTDFHFE 502
>gnl|CDD|239900 cd04453, S1_RNase_E, S1_RNase_E: RNase E and RNase G, S1-like
RNA-binding domain. RNase E is an essential
endoribonuclease in the processing and degradation of
RNA. In addition to its role in mRNA degradation, RNase
E has also been implicated in the processing of rRNA,
and the maturation of tRNA, 10Sa RNA and the M1
precursor of RNase P. RNase E associates with PNPase (3'
to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and
enolase (glycolytic enzyme) to form the RNA
degradosome. RNase E tends to cut mRNA within
single-stranded regions that are rich in A/U
nucleotides. The N-terminal region of RNase E contains
the catalytic site. Within the conserved N-terminal
domain of RNAse E and RNase G, there is an S1-like
subdomain, which is an ancient single-stranded
RNA-binding domain. S1 domain is an RNA-binding module
originally identified in the ribosomal protein S1. The
S1 domain is required for RNA cleavage by RNase E. RNase
G is paralogous to RNase E with an N-terminal catalytic
domain that is highly homologous to that of RNase E.
RNase G not only shares sequence similarity with RNase
E, but also functionally overlaps with RNase E. In
Escherichia coli, RNase G is involved in the maturation
of the 5' end of the 16S rRNA. RNase G plays a secondary
role in mRNA decay.
Length = 88
Score = 27.6 bits (62), Expect = 6.6
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 294 KAMFVDFGLAKERGGYCYLRYDDTNPEAEKK 324
+A FVD GL K +L D P KK
Sbjct: 23 QAAFVDIGLGKN----GFLHLSDILPAYFKK 49
>gnl|CDD|223040 PHA03311, PHA03311, helicase-primase subunit BBLF4; Provisional.
Length = 782
Score = 29.9 bits (68), Expect = 6.7
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 240 NYKQ--------VHTEIPFSDGSVLICCNTKEVLDKHLEVTG 273
NY Q V TE + G L+ + VL+ + VT
Sbjct: 425 NYSQFRDQDMSAVRTEEHSAQGLTLVTYDITYVLNSQVSVTT 466
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 29.5 bits (66), Expect = 7.4
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 192 EKLSKKKEKKEKKEKP---EKDEDKKFANDAPVQLPEEDLFPISNFPPPEENYKQVHTEI 248
++ K+KEKK ++ + EK ++ A P + P++ PP EE +Q E
Sbjct: 144 KEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREA 203
Query: 249 P 249
Sbjct: 204 V 204
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 29.0 bits (65), Expect = 7.9
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 13/57 (22%)
Query: 155 LFAHVRKRLP-WADPKIVKQLIDARMYELLGERTAADIEKLSKKKEKKEK-KEKPEK 209
L A R+ W DP+ D R E+L EK KKK K+ K +EK EK
Sbjct: 161 LVAEAREHFGYWVDPR------DPRFQEML-----QQKEKEEKKKVKEAKRREKEEK 206
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 30.0 bits (67), Expect = 7.9
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 618 DDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEV----ILSD 673
DD + +P + V + H +FR+ +++ G G+ L R AF + E+ I D
Sbjct: 980 DDNRELF-IPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSR-AFRNRFLEMHFDDIPED 1037
Query: 674 DKETILHIRAEYDPS 688
+ E ILH R E PS
Sbjct: 1038 ELEEILHGRCEIAPS 1052
>gnl|CDD|116082 pfam07461, NADase_NGA, Nicotine adenine dinucleotide glycohydrolase
(NADase). This family consists of several bacterial
nicotine adenine dinucleotide glycohydrolase (NGA)
proteins which appear to be specific to Streptococcus
pyogenes. NAD glycohydrolase (NADase) is a potential
virulence factor. Streptococcal NADase may contribute to
virulence by its ability to cleave beta-NAD at the
ribose-nicotinamide bond, depleting intracellular NAD
pools and producing the potent vasoactive compound
nicotinamide.
Length = 446
Score = 29.3 bits (65), Expect = 8.6
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 712 VEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERL 767
+E +FEK F D W++D D + + YA+ ++ +AV R ++ R+
Sbjct: 195 IERDIFEKKFKEIK----DKWVTDKQADEFIETADKYADKAIQMSAVASRAEYYRM 246
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.405
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 41,751,279
Number of extensions: 4217389
Number of successful extensions: 5823
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5647
Number of HSP's successfully gapped: 121
Length of query: 798
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 693
Effective length of database: 6,280,432
Effective search space: 4352339376
Effective search space used: 4352339376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.0 bits)