RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 003751
(798 letters)
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E.
coli, complex, ligase/RNA complex; HET: QSI; 2.25A
{Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P*
1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A*
1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Length = 553
Score = 871 bits (2252), Expect = 0.0
Identities = 259/552 (46%), Positives = 354/552 (64%), Gaps = 25/552 (4%)
Query: 262 KEVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPE 320
++++D+ L V TRFPPEPNGYLHIGHAK++ ++FG+A++ G C LR+DDTNP
Sbjct: 12 RQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPV 71
Query: 321 AEKKEYIDHIEEIVQWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKE 379
E EY++ I+ V+W+G+ + Y+SDYF +L+ A+ELI +G AYVD TPE+I+E
Sbjct: 72 KEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIRE 131
Query: 380 YR----EKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAY 435
YR + NSP+RDR + E+L LFE MR G EEGKA LR K DM + M D + Y
Sbjct: 132 YRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLY 191
Query: 436 RIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-Y 494
RIKF H G+KWCIYP YD+ HCI D++E ITHSLCTLEF+ R Y W+L + +
Sbjct: 192 RIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPV 251
Query: 495 QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQ 554
P +E+SRLN+ TVMSKRKLN LVT+K+V+GWDDP + T++GLRRRG T+ SI F +
Sbjct: 252 HPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCK 311
Query: 555 GIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPD 614
IG+++ D+ I + LE IRE+LN+ APR M V++P+K+VI N + G + P
Sbjct: 312 RIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQ-GEGEMVTMPNHP- 369
Query: 615 AQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDD 674
+VPFS ++I+ +DFR + +K Y L GK V LR A+ IK V D
Sbjct: 370 --NKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGKEVRLRNAYVIKAERVE-KDA 426
Query: 675 KETILHIRAEYDPSKKT-------KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPA 727
+ I I YD + K KGV+HWV+ + L VE+RL+++LF+ NP
Sbjct: 427 EGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAA----HALPVEIRLYDRLFSVPNPG 482
Query: 728 ELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRT 786
DD+LS +NP+S V+ + +AEPSL A G FQFER GYF +D + ST EK VFNRT
Sbjct: 483 AADDFLSVINPESLVIK-QGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRT 541
Query: 787 VTLKDSFPKGGK 798
V L+D++ K G+
Sbjct: 542 VGLRDTWAKVGE 553
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 848 bits (2192), Expect = 0.0
Identities = 217/646 (33%), Positives = 315/646 (48%), Gaps = 70/646 (10%)
Query: 208 EKDEDKKFANDAPVQLPEEDLFPISNFPPPEENYKQVHTEIPFSDGSVLICCNTKEVLDK 267
E+D F+ +P L ++ P P ++ E++++
Sbjct: 6 EQDRGAPFSGRSPRILTRM-----TDAPRPTAGADAPARP---PAAPLVAPNFITEIIER 57
Query: 268 HLEVTG-GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEY 326
LE V+TRFPP+P+GY H+GH A +DF A++ GG LR DDTNPE ++EY
Sbjct: 58 DLEAGKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEY 117
Query: 327 IDHIEEIVQWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKM 385
+D I + ++W+G + Y SDYF Y A +LIR+G AYV+ +PEE+ R
Sbjct: 118 VDSIADDLKWLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNAT 177
Query: 386 ----NSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTP 441
SP+RDR + E+L L M+ G +G+ LR K D+ N + D + YRI P
Sbjct: 178 TPGTPSPYRDRSVEENLDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKP 237
Query: 442 HPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-YQPYVWE 500
H D+W IYP+YD+ H + D+IE +THS+C+LEF RA Y WL+ L +P+ +E
Sbjct: 238 HFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQYE 297
Query: 501 YSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR 560
+ R + T+ SKRKL LV V GWDDP + TL RR GVT ++ AF IG+SR
Sbjct: 298 FGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSR 357
Query: 561 SDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLD------------ 608
++ + + E +R++LN APR M VL+P+KV +TN++ + L
Sbjct: 358 TNRTVDIAVYENAVRDDLNHRAPRVMAVLDPVKVTLTNLDGEKTLSLPYWPHDVVRDSPD 417
Query: 609 --AKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKC 666
+ A VP + +YIE DF K + L PG +V LR A I+
Sbjct: 418 GLVGMPGGGRVAPEEAVRDVPLTRELYIERDDFSPAPPKGFKRLTPGGTVRLRGAGIIRA 477
Query: 667 TEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENP 726
+ +D+ + HIRA K GV+HWV+ L E RL+++LF +P
Sbjct: 478 DDFG-TDEAGQVTHIRATLLGEDA-KAAGVIHWVSAE----RALPAEFRLYDRLFRVPHP 531
Query: 727 AELD----------------------------DWLSDLNPDSKVVIPEAYAEPSLHSAAV 758
+ ++ L PDS V+ Y EPS+
Sbjct: 532 EGENADVEDDSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVL-RGYVEPSVAGDPA 590
Query: 759 GDRFQFERLGYFAVDK------DSTPEKLVFNRTVTLKDSFPKGGK 798
R+QFER GYF D DS + LVF R +TLKD++ K G
Sbjct: 591 DTRYQFERQGYFWRDPVELERVDSREDALVFGRIITLKDTWGKQGG 636
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 661 bits (1708), Expect = 0.0
Identities = 128/551 (23%), Positives = 211/551 (38%), Gaps = 60/551 (10%)
Query: 233 NFPPPEENYKQVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGH 292
N PEE +++ + K + L G V+ RF P P+G LHIGH
Sbjct: 58 NSLSPEEQQQEMERLGL----EITERKQKKRKGLRELAGVKGEVVLRFAPNPSGPLHIGH 113
Query: 293 AKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQ 352
A+A ++ A++ G LR +DT+P E D I ++W+G E + SD +
Sbjct: 114 ARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDETVIQSDRME 173
Query: 353 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEG 412
YE +LI RG AYV PEE +E + + R E+L+ + +M +EG
Sbjct: 174 TYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEM--KEG 231
Query: 413 KATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSL 472
A +R+K D+ + N + D ++ RI HP G ++ +YP +++ + D + +TH L
Sbjct: 232 SAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVL 291
Query: 473 CTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPC 532
+ R +L LG P Y RL + + +S + GWDDP
Sbjct: 292 RGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKMDDVALSTSGAREGILRGEYSGWDDPR 351
Query: 533 LMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPL 592
L TL + RRG+ +I + IG+ +DS + ++ R L + A R +P+
Sbjct: 352 LGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRSILEEEARRYFFAADPV 411
Query: 593 KVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAP 652
K+ + + + ++ PD + VY+ D
Sbjct: 412 KLEVVGLPGP--VRVERPLHPD---HPEIGNRVLELRGEVYLPGDDLGEGP--------- 457
Query: 653 GKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRV 712
+ L A + + L +E + ++HWV + L
Sbjct: 458 ---LRLIDAVNVIYSGGELR--------YHSEGIEEARELGASMIHWVPAE----SALEA 502
Query: 713 EVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAV 772
EV + + E V D Q ER G+ +
Sbjct: 503 EVIMPDASRV-----------------------RGVIEADASELEVDDVVQLERFGFARL 539
Query: 773 DKDSTPEKLVF 783
DS +VF
Sbjct: 540 --DSAGPGMVF 548
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA
LIG amidotransferase, ligase; 2.30A {Saccharomyces
cerevisiae}
Length = 187
Score = 209 bits (534), Expect = 2e-63
Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 4/186 (2%)
Query: 8 DKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKY 67
E+ +LF ++G +D+ K + N KV+ +L +I E + L++ +A+
Sbjct: 3 SVEELTQLFSQVGFEDKKVKEIVKNKKVSDSLYKLIKETPSDYQWNKSTRALVHNLASFV 62
Query: 68 PTNALVHRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSED 127
L ++ I++ +KT Q++AAF + + G E GVG+E++ +
Sbjct: 63 KGTDLPKSELIVNGIINGDLKTSLQVDAAFKYVKANGEA-STKMGMNENSGVGIEITEDQ 121
Query: 128 IELTVNEVFEENKNTILELRYRTNVGDLFAHVR--KRLPWADPKIVKQLIDARMYELLGE 185
+ V + +ENK IL RY+ G +FA V+ K L WADP+ K +ID + +LLG
Sbjct: 122 VRNYVMQYIQENKERILTERYKLVPG-IFADVKNLKELKWADPRSFKPIIDQEVLKLLGP 180
Query: 186 RTAADI 191
+ D+
Sbjct: 181 KDERDL 186
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B
AARS, ATP-dependen charging, protein synthesis,
structural genomics; HET: GLU; 2.05A {Burkholderia
thailandensis}
Length = 490
Score = 82.6 bits (205), Expect = 1e-16
Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 45/220 (20%)
Query: 275 NVLTRFPPEPNGYLHIGHAK-AMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEI 333
V TRF P P G++H+G+ + A++ + A++ G LR +DT+ E +E +D I E
Sbjct: 25 PVRTRFAPSPTGFIHLGNIRSALY-PWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEG 83
Query: 334 VQWMG--W--EPFKITYTSDYFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKK 384
+ W+G + P Y+Q + Y E+ ++ +G Y + + EE+ RE++
Sbjct: 84 MAWLGLDYDEGP--------YYQMQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQ 135
Query: 385 M--------NSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYR 436
+ WR P + G LR + D + R
Sbjct: 136 RAAGEKPRYDGTWRPEPGKVL----PEPPAGV----APVLRFRNP-LTGTVAWDDAVKGR 186
Query: 437 IKFTPHPHAGDKWCI-----YPSYDYAHCIVDSIE-NITH 470
++ + D + P Y++ +VD ++ ITH
Sbjct: 187 VEI-SNEELDD-LVVARPDGTPMYNFC-VVVDDLDMGITH 223
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase,
structural genomics, unknown function; 1.50A
{Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Length = 298
Score = 78.3 bits (194), Expect = 7e-16
Identities = 33/159 (20%), Positives = 53/159 (33%), Gaps = 29/159 (18%)
Query: 272 TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIE 331
T + RF P P+G LH G A + A+ R G +R +D +P E + I
Sbjct: 2 TDTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETIL 61
Query: 332 EIVQWMG--W--EPFKITYTSDYFQ----ELYELAVE-LIRRGHAYVDHQTPEEIKEYRE 382
++ G W + +Q + Y A+ L +G +Y T I+
Sbjct: 62 RQLEHYGLHWDGDV--------LWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGG 113
Query: 383 KKMNSPWRDRPIAES-----LKL------FEDMRNGRIE 410
+ R ++ F D G I
Sbjct: 114 -IYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIH 151
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase,
ATP-binding, nucleotide-B; HET: GLU; 2.45A
{Synechococcus elongatus}
Length = 492
Score = 78.0 bits (193), Expect = 3e-15
Identities = 61/225 (27%), Positives = 93/225 (41%), Gaps = 50/225 (22%)
Query: 276 VLTRFPPEPNGYLHIGHAK-AMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 334
V R P P G LHIG A+ A+F ++ A+ RGG LR +DT+ E + EY ++I E +
Sbjct: 2 VRVRLAPSPTGNLHIGTARTAVF-NWLYARHRGGKFILRIEDTDRERSRPEYTENILEGL 60
Query: 335 QWMG--W--EPFKITYTSDYFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKKM 385
QW+G W P YFQ +LY + L+ +G AY + TPEE++ R ++
Sbjct: 61 QWLGLTWDEGP--------YFQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQK 112
Query: 386 --------NSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQDMQND-NFNMYDLIAY 435
++ R E + G +R K + + DL+
Sbjct: 113 AKGQAPRYDNRHRHLTPEE--------QAAFEAAGRTPVIRFKIEDDRQIEWQ--DLVRG 162
Query: 436 RIKFTPHPHAGDKWCI----------YPSYDYAHCIVDSIENITH 470
R+ + GD I YP Y+ + D IT
Sbjct: 163 RVSWQGADLGGD-MVIARAAPRGEIGYPLYNLVVVVDDIAMGITD 206
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase
1, glurs 1, structural genomics, joint center for ST
genomics, JCSG; 2.34A {Thermotoga maritima}
Length = 481
Score = 74.5 bits (184), Expect = 5e-14
Identities = 64/220 (29%), Positives = 106/220 (48%), Gaps = 37/220 (16%)
Query: 276 VLTRFPPEPNGYLHIGHAK-AMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 334
V RF P P G+LH+G A+ A+F +F A++ G LR +DT+ E ++EY + + E +
Sbjct: 14 VRVRFAPSPTGFLHVGGARTALF-NFLFARKEKGKFILRIEDTDLERSEREYEEKLMESL 72
Query: 335 QWMG--WE--PFKITYTSDYFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKKM 385
+W+G W+ P Y Q E+Y E A L++ G AY + PEEI+E REK +
Sbjct: 73 RWLGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLL 132
Query: 386 --------NSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQDMQNDNFNMYDLIAYR 436
+ ++ + R E+G + + K M ++ + D++
Sbjct: 133 SEGKAPHYSQEMFEK------FDTPERRREYEEKGLRPAVFFK--MPRKDYVLNDVVKGE 184
Query: 437 IKFTPHPHAGDKWCI-----YPSYDYAHCIVDSIE-NITH 470
+ F GD + I P+Y++A C+VD + ITH
Sbjct: 185 VVF-KTGAIGD-FVIMRSNGLPTYNFA-CVVDDMLMEITH 221
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase; HET: GLU ATP; 1.80A {Thermus
thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A*
1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A*
1g59_A 1gln_A
Length = 468
Score = 74.1 bits (183), Expect = 5e-14
Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 30/213 (14%)
Query: 276 VLTRFPPEPNGYLHIGHAK-AMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 334
V+TR P P G H+G A A+F ++ A+ GG +R +DT+ + I +
Sbjct: 2 VVTRIAPSPTGDPHVGTAYIALF-NYAWARRNGGRFIVRIEDTDRARYVPGAEERILAAL 60
Query: 335 QWMG--WE--PFKITYTSDYFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKKM 385
+W+G ++ P Y Q LY + A EL++RG AY +TPEE+++ R++K
Sbjct: 61 KWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKG 120
Query: 386 --NSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQDMQNDNFNMYDLIAYRIKFTPH 442
+ R+ P E+ + R G +R+K + + D + + + +
Sbjct: 121 GYDGRARNIPPEEAEE--------RARRGEPHVIRLKVP-RPGTTEVKDELRGVVVY-DN 170
Query: 443 PHAGDKWCI----YPSYDYAHCIVDSIE-NITH 470
D + YP+Y A +VD +T
Sbjct: 171 QEIPDVVLLKSDGYPTYHLA-NVVDDHLMGVTD 202
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA
aminoacylation, protein biosynthesis, aminoacyl-tRNA
synthetase, ligase; 1.65A {Mycobacterium tuberculosis}
PDB: 3pny_A 3pnv_A
Length = 498
Score = 69.9 bits (172), Expect = 1e-12
Identities = 51/220 (23%), Positives = 86/220 (39%), Gaps = 38/220 (17%)
Query: 275 NVLTRFPPEPNGYLHIGHAK-AMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEI 333
V RF P P G H+G + A+F ++ A+ GG R +DT+ + + +E + +
Sbjct: 6 TVRVRFCPSPTGTPHVGLVRTALF-NWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDA 64
Query: 334 VQWMG--W--EPFKITYTSDYFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKK 384
++W+G W P Y Q E+Y ++ L+ G AY TPEE++
Sbjct: 65 LRWLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAA 124
Query: 385 MNSP-------WRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQDMQNDNFNMYDLIAYR 436
+P R A+ + EG + +R++ M +D+ DL+
Sbjct: 125 GRNPKLGYDNFDRHLTDAQRAA--------YLAEGRQPVVRLR--MPDDDLAWNDLVRGP 174
Query: 437 IKFTPHPHAGDKWCI-----YPSYDYAHCIVDSIE-NITH 470
+ F D + + P Y D ITH
Sbjct: 175 VTF-AAGSVPD-FALTRASGDPLYTLV-NPCDDALMKITH 211
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.4 bits (161), Expect = 3e-11
Identities = 80/565 (14%), Positives = 160/565 (28%), Gaps = 176/565 (31%)
Query: 295 AMFVDFGLAKERGGYCYL----RYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDY 350
FV+ L Y +L + + P + YI+ + + + + F + Y
Sbjct: 80 QKFVEEVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQRDRL--YNDNQVF-----AKY 129
Query: 351 FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMN---SPW------------------ 389
+ R + + R+ + +
Sbjct: 130 N----------VSR---------LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 390 -RDRPIAESLKLFED----MRNGRIEEGKATLRMKQDM--QND-NFNMYDLIAYRIKFTP 441
+ + + + L M Q + Q D N+ + IK
Sbjct: 171 CLSYKV---QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 442 HPHAGDKWCIYPSYDYAHC--IVDSIENITH----SL-CTLEFETRRASYFWLLHALGLY 494
H + + S Y +C ++ +++N +L C + TR L A
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 495 QPYVWEYSRLNVSNTVMSKRK-LNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFV 553
L+ + ++ + + L+ KY+D L R +T N
Sbjct: 288 HI------SLDHHSMTLTPDEVKSLLL--KYLD-------CRPQDLPREVLT---TNPRR 329
Query: 554 QG-IGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNP-------LKVVI----TNMES 601
I S D L D ++ ++L ++ VL P ++ + ++ +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 602 GTIMHLDAKRWPDAQADDA----------SAFYKVPFSNVVYIEHS---DFRMKDSKDYY 648
+ + W D D S K P + + I S + ++K +Y
Sbjct: 390 ILLSLI----WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-PSIYLELKVKLENEY- 443
Query: 649 GLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPK--GVLHW------- 699
A +S++ Y P +D P +
Sbjct: 444 --ALHRSIVDHYNIPKT-------------------FDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 700 VAEPSPGVNPLRVEVRLFEKLFNSENPAELD-DWLSDLNPDSKVVIPEAYAEPSLHSAAV 758
E + LF +F LD +L + K+ + S ++
Sbjct: 483 NIEHPE-------RMTLFRMVF-------LDFRFL-----EQKI---RHDSTAWNASGSI 520
Query: 759 GDRFQ-FERLGYFAVDKDSTPEKLV 782
+ Q + + D D E+LV
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLV 545
Score = 41.8 bits (97), Expect = 0.001
Identities = 61/400 (15%), Positives = 100/400 (25%), Gaps = 158/400 (39%)
Query: 1 MVGVSKG-DKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNL 59
+ S E+ L LK
Sbjct: 291 LDHHSMTLTPDEVKSLLLKY---------------------------------------- 310
Query: 60 LYTVATKYPTNALVHRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGV 119
L P L P L I S A + + ++ D+
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD----NW-----KHVNCDKLTTI--- 358
Query: 120 GVEVSSEDIELTVNEVFEENKNTILELR--YRTNVGDL--FAHVRKRLPWADPKIVKQLI 175
IE ++N V E E R + L F P I
Sbjct: 359 --------IESSLN-VLEPA-----EYRKMFD----RLSVF-----------PPSAH--I 387
Query: 176 DARMYELL-GERTAADIEKLSKKKEKK---EKKEKPEKDEDKKFANDAPVQLPEEDLFPI 231
+ L+ + +D+ + K K EK+ K + +P ++
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-----------ISIP--SIY-- 432
Query: 232 SNFPPPEENYKQVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYL--H 289
EN +H I + N + D PP + Y H
Sbjct: 433 LELKVKLENEYALHRSI-------VDHYNIPKTFDSD---------DLIPPYLDQYFYSH 476
Query: 290 IG-HAKAM------------FVDFGLAKERGGYCYLRYDDTNPEAEK---------KEYI 327
IG H K + F+DF +++ +R+D T A K Y
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQK-----IRHDSTAWNASGSILNTLQQLKFYK 531
Query: 328 DHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHA 367
+I + +P + L ++ LI +
Sbjct: 532 PYICDN------DPKYERLVNAILDFLPKIEENLICSKYT 565
Score = 30.2 bits (67), Expect = 3.8
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 13/90 (14%)
Query: 5 SKGDKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVI---------HEAAVTDGC--- 52
+ E + LF + LD R + I ++ N + I ++ + D
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 53 ERRIGNLLYTVATKYPTNALVHRPTLLLYI 82
ER + +L K N + + T LL I
Sbjct: 542 ERLVNAIL-DFLPKIEENLICSKYTDLLRI 570
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase
2; protein-RNA complex, ligase-RNA complex; HET: GSU;
3.37A {Thermotoga maritima}
Length = 592
Score = 63.8 bits (156), Expect = 1e-10
Identities = 49/172 (28%), Positives = 74/172 (43%), Gaps = 21/172 (12%)
Query: 259 CNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAK-AMFVDFGLAKERGGYCYLRYDDT 317
+ EV K + V RF P P G+LH+G A+ A+F ++ A++ GG LR +DT
Sbjct: 113 FDILEVGPKKIRRCFELVRVRFAPSPTGHLHVGGARTALF-NWMFARKEGGKFILRIEDT 171
Query: 318 NPEAEKKEYIDHIEEIVQWMG--WE--PFKITYTSDYFQ----ELY-ELAVELIRRGHAY 368
+ E +EY I E ++W G W+ P Y Q E+Y E A +L+ AY
Sbjct: 172 DTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAY 231
Query: 369 VDHQTPEEIKEYREKKMNSPWR----DRPIAESLKL------FEDMRNGRIE 410
E+ + P P+ K+ FED+ G +E
Sbjct: 232 YVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME 283
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex,
aminoacyl-tRNA synthetase, ATP-binding, ligase,
nucleotide-binding; HET: GSU; 2.00A {Thermotoga
maritima} PDB: 3akz_B*
Length = 488
Score = 62.9 bits (154), Expect = 2e-10
Identities = 49/172 (28%), Positives = 74/172 (43%), Gaps = 21/172 (12%)
Query: 259 CNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAK-AMFVDFGLAKERGGYCYLRYDDT 317
+ EV K + V RF P P G+LH+G A+ A+F ++ A++ GG LR +DT
Sbjct: 9 FDILEVGPKKIRRCFELVRVRFAPSPTGHLHVGGARTALF-NWMFARKEGGKFILRIEDT 67
Query: 318 NPEAEKKEYIDHIEEIVQWMG--WE--PFKITYTSDYFQ----ELY-ELAVELIRRGHAY 368
+ E +EY I E ++W G W+ P Y Q E+Y E A +L+ AY
Sbjct: 68 DTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAY 127
Query: 369 VDHQTPEEIKEYREKKMNSPWR----DRPIAESLKL------FEDMRNGRIE 410
E+ + P P+ K+ FED+ G +E
Sbjct: 128 YVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME 179
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.9 bits (142), Expect = 6e-09
Identities = 100/548 (18%), Positives = 162/548 (29%), Gaps = 189/548 (34%)
Query: 4 VSKGDKSEILELFLKIGLDDRTAKNTI--ANNKVTANLTAVIHEAAVT-----DGCERRI 56
V + ++ L + L + +N N+ IH A D +
Sbjct: 72 VEPSKVGQFDQV-LNLCLTE--FENCYLEGND---------IHALAAKLLQENDTTLVKT 119
Query: 57 GNLL--YTVATKYPTNALVHRPTLLLYIVSSKIKTPAQLEAA----FSFFASTGSENFEV 110
L+ Y + RP K A A A G
Sbjct: 120 KELIKNY-----ITARIMAKRPF-------DKKSNSALFRAVGEGNAQLVAIFG------ 161
Query: 111 DEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELR-----YRTNVGDLFAHVRKRLPW 165
G G ++ FEE LR Y VGDL + L
Sbjct: 162 -------GQG----------NTDDYFEE-------LRDLYQTYHVLVGDLIKFSAETL-- 195
Query: 166 ADPKIVKQLIDARMYELLGERTAADIEK-LSKKKEKKEKKEKPEKDEDKKFANDAPVQLP 224
++++ +DA G +I + L E P DK + P+ P
Sbjct: 196 --SELIRTTLDAEKVFTQG----LNILEWL----------ENPSNTPDKDYLLSIPISCP 239
Query: 225 EEDLFPISNFP--------PPEENYKQVHTEIPFSDG---SVLI-CCNTKE----VLDKH 268
+ ++++ P E + S G +V I ++ E + K
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 269 LEV---TGGNVLTRFPP-----------EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRY 314
+ V G +P N G M L +E+ Y+
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENN---EGVPSPMLSISNLTQEQVQ-DYVNK 355
Query: 315 DDTNPEAEKKEYI------DHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHA- 367
+++ A K+ I ++ +V G P Q LY L + L R+ A
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNL--VVS--G-PP----------QSLYGLNLTL-RKAKAP 399
Query: 368 -YVD-HQTPEEIKEYREKKMNSPWRDRPIAE---SLKLFEDMRNGRIEEGKATLRMKQDM 422
+D + P + E+K+ R P+A S L A+ + +D+
Sbjct: 400 SGLDQSRIP-----FSERKLKFSNRFLPVASPFHS-HLLVP----------ASDLINKDL 443
Query: 423 QNDN--FNMYDLIAYRIKFTP--HPHAGDKWCIYPSYDYAHCIVDSI-------ENITHS 471
+N FN D+ +I P G + S + IVD I E T
Sbjct: 444 VKNNVSFNAKDI---QI---PVYDTFDGSDLRVL-SGSISERIVDCIIRLPVKWETTTQF 496
Query: 472 LCT--LEF 477
T L+F
Sbjct: 497 KATHILDF 504
Score = 56.6 bits (136), Expect = 3e-08
Identities = 93/552 (16%), Positives = 156/552 (28%), Gaps = 209/552 (37%)
Query: 222 QLPEEDLFPISNFPPPEENYKQVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFP 281
QL E+ F P P E + E + E++ K L G V +
Sbjct: 32 QLQEQ--F-NKILPEPTEGFAA-DDE----PTTPA------ELVGKFL----GYVSSLVE 73
Query: 282 PEPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDD------------TNPEAEKKEYID 328
P G + + +F E CYL +D + KE I
Sbjct: 74 PSKVGQFDQV--LNLCLTEF----EN---CYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 329 HIEEIVQWMGWEPFKITYTS------------------------DYFQELYELAVELIRR 364
+ PF S DYF+EL +L
Sbjct: 125 NYITARIMAK-RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL------- 176
Query: 365 GHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQN 424
Y + Y + L I+ TL
Sbjct: 177 ---Y---------QTY-----------HVLVGDL----------IKFSAETLS------- 196
Query: 425 DNFNMYDLIAYRIKFTP-HPHAGD--KW----CIYPSYDY-AHCIVDSIENITHSLCTLE 476
+LI + + +W P DY + S I + L
Sbjct: 197 ------ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-SCPLIG--VIQL- 246
Query: 477 FETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYV---DGWDD--- 530
A Y LG + P E T S+ LVT + D W+
Sbjct: 247 -----AHYVVTAKLLG-FTPG--ELRSYLKGATGHSQG----LVTAVAIAETDSWESFFV 294
Query: 531 ---PCLMTLA--GLR------RRGVTSTSINAFVQ-GIGI-----SRSDSLIRLDRLEYH 573
+ L G+R + + + ++ G+ S S+ + ++++ +
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN--LTQEQVQDY 352
Query: 574 IREELNKTAPRTMVV----LN-PLKVVIT-NMES--GTIMHLDAKRWPDAQADDASAFYK 625
+ + N P V +N +V++ +S G + L + P D S +
Sbjct: 353 V-NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL--DQS---R 406
Query: 626 VPFSN--VVYIEHSDFRMKDSKDYYGL---APGKSVLLRYAFPIKCTEVILSDDKETILH 680
+PFS + + + F L +P S LL A +++I D + +
Sbjct: 407 IPFSERKLKF--SNRF----------LPVASPFHSHLLVPA-----SDLINKDLVKNNVS 449
Query: 681 IRAE------YD 686
A+ YD
Sbjct: 450 FNAKDIQIPVYD 461
Score = 42.3 bits (99), Expect = 7e-04
Identities = 39/199 (19%), Positives = 65/199 (32%), Gaps = 72/199 (36%)
Query: 641 MKDSKDYYGLAPG-KSVLLR--------YAFPIKCTEVILSDDKETILH--------IRA 683
M D Y + + V R Y F I ++++++ +H IR
Sbjct: 1631 M--GMDLYKTSKAAQDVWNRADNHFKDTYGFSI--LDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 684 EYD-------PSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFE----KLFNSEN--PA--- 727
Y K K + + + E S F L ++ PA
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSY--------TFRSEKGLLSATQFTQPALTL 1738
Query: 728 -ELDDWLSDLNPDSKVVIPE--AYAEPSLHS-------AAVGDRFQFERLGYFAVDKDST 777
E + DL SK +IP +A HS A++ D E V
Sbjct: 1739 MEKAAF-EDLK--SKGLIPADATFAG---HSLGEYAALASLADVMSIES----LV----- 1783
Query: 778 PEKLVFNRTVTLKDSFPKG 796
++VF R +T++ + P+
Sbjct: 1784 --EVVFYRGMTMQVAVPRD 1800
Score = 31.9 bits (72), Expect = 1.2
Identities = 30/197 (15%), Positives = 56/197 (28%), Gaps = 63/197 (31%)
Query: 452 YPSYDYAHCIVDSIENITHSLCTLEFE---------TRRASYFWLLHALGLYQPYVWEYS 502
Y + A + + +N H T F +F + + YS
Sbjct: 1636 YKTSKAAQDVWNRADN--HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE----NYS 1689
Query: 503 RLNVSNTVMSKRKLNFL------VTNKYVDGWDD----------PCLMT-----LAGLRR 541
+ V K K + + Y + P L L+
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 542 RGVTSTSINAFVQG--IG-----ISRSDSL-----IRLDRLEYHIREELNKTA-PRT--- 585
+G+ +A G +G S +D + + + + R + A PR
Sbjct: 1750 KGLIPA--DATFAGHSLGEYAALASLADVMSIESLVEV--V--FYRGMTMQVAVPRDELG 1803
Query: 586 -----MVVLNPLKVVIT 597
M+ +NP +V +
Sbjct: 1804 RSNYGMIAINPGRVAAS 1820
Score = 29.6 bits (66), Expect = 5.7
Identities = 24/124 (19%), Positives = 38/124 (30%), Gaps = 41/124 (33%)
Query: 676 ETILHIRAEYDPSKKTKPKG--VLHWVAEPS--PGVN---------PL---------RVE 713
ET+ + ++K +G +L W+ PS P + PL V
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 714 VRLFEKLFNSENPAELDDWLSDLNPDSK-----VVIPEAYAEPSLHSAA---------VG 759
+L P EL +L S+ V I E + S + +G
Sbjct: 253 AKLLGF-----TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 760 DRFQ 763
R
Sbjct: 308 VRCY 311
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.9 bits (82), Expect = 0.027
Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 158 HVRKRLPWA---DPKI-VKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPE-KDED 212
+RK W ++ M + E+ D+E+ ++++ ++ +K K + D
Sbjct: 86 SIRK---WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
Query: 213 KKFANDAPVQLPEEDL 228
K F P+ D+
Sbjct: 143 KAFYQQ-----PDADI 153
Score = 35.1 bits (80), Expect = 0.040
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 14/62 (22%)
Query: 372 QTPEEIKEYRE-------------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRM 418
Q PE I+++RE K M WR++ + L+ + ++ ++E+ K R+
Sbjct: 82 QEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKD-LEEWNQRQSEQVEKNKINNRI 140
Query: 419 KQ 420
Sbjct: 141 AD 142
Score = 28.2 bits (62), Expect = 8.8
Identities = 6/32 (18%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 185 ERTAADIEKLSKKKEKKEK--KEKPEKDEDKK 214
+R + E + K +E++ K +E + +
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVME 109
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 36.1 bits (83), Expect = 0.051
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 184 GERTAADIEKLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNFPPPEE 239
+ D + K+KK+K +K K + P +P DL+P FP +E
Sbjct: 81 RDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTD--PPSVPICDLYPNGVFPKGQE 134
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.00A {Pseudomonas
aeruginosa}
Length = 417
Score = 31.4 bits (71), Expect = 1.1
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 21/106 (19%)
Query: 286 GYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN--PEAEKKEYIDHIEEIVQWMGWEPFK 343
G + + + G Y Y P+A KE +D I+ V+ +G +
Sbjct: 296 GLDYALMPGDPIITIWPEQRFGEYASALYGILEEEPKAGLKELVDAIDYTVKKVGID--H 353
Query: 344 ITYTSDYFQ-----------ELYELAVELIRRGHAYVDHQTPEEIK 378
+ +SD+ E+ + ELI RG+ + +I
Sbjct: 354 VGISSDFNDGGGVDGWKDVSEIRNVTAELITRGY------SDADIA 393
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 30.2 bits (67), Expect = 3.0
Identities = 29/213 (13%), Positives = 54/213 (25%), Gaps = 25/213 (11%)
Query: 178 RMYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNFPPP 237
G RTA I KK+ ++E KKF +D + + F
Sbjct: 87 EAGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDASI-------VGFFDDS 139
Query: 238 EENYKQVHTEIPFS-DGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAM 296
+ + + E L + G ++ P
Sbjct: 140 FSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYDDNGEGIILFRPSH------------- 186
Query: 297 FVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYE 356
K KK ++I I M + + D Y+
Sbjct: 187 ----LTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQGKDLLIAYYD 242
Query: 357 LAVELIRRGHAYVDHQTPEEIKEYREKKMNSPW 389
+ E +G Y ++ K++ + +
Sbjct: 243 VDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNF 275
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 30.0 bits (67), Expect = 3.2
Identities = 13/112 (11%), Positives = 29/112 (25%), Gaps = 13/112 (11%)
Query: 263 EVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYL--------RY 314
+ LD + + P + + + L +
Sbjct: 72 KFLDDVEAKKPTFIFIQK--YPQKEVALEEYITLEFARYLQDAFNIQVIIQILDDIKVLN 129
Query: 315 DDTNPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRR 364
+ K D ++ I+ G+ K I YF ++Y + +
Sbjct: 130 REATINEASKMSNDLMKYILA-FGFNEDKTFIYTDYQYFGKMYRTISLVEKA 180
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA
complex; 3.15A {Methanothermobacterthermautotrophicus}
SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Length = 619
Score = 30.2 bits (68), Expect = 3.4
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 105 SENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTN-----VGDLFAHV 159
E ++ + + ++ ++IE + E+ E N + I E +G +
Sbjct: 542 DEGLAAEDAARKLNL-LLLAEDEIESIIQEIVEGNLDMISE--RGMGAMGPLMGQAMGRL 598
Query: 160 RKRLPWADPKIVKQLIDARMYELL 183
R R AD K+V +++ ++ E L
Sbjct: 599 RGR---ADGKVVNRILREKIQERL 619
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein,
N-glycosylation, structural genomics; HET: FLC; 1.60A
{Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A*
3fj7_A*
Length = 237
Score = 29.3 bits (66), Expect = 3.9
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 725 NPAELDDWLSDL-NPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVF 783
NP ++ DL N ++V+PE + + V + + + F
Sbjct: 91 NPLKIKGL-KDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQN-FRNNIVAF 148
Query: 784 NRTVT 788
Sbjct: 149 VPNSG 153
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase
inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB:
3ahm_A* 3aho_A* 2h1n_A 2h1j_A
Length = 564
Score = 29.7 bits (67), Expect = 3.9
Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 307 GGYCYLRYD-DT-NPEAEK-KEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIR 363
CY+R+ DT + ++ +++ D +E IV+ + + ++ +S + +L + +
Sbjct: 54 AQICYIRHTIDTNDEFYKQEQDFFDEVEPIVKGLVNDYYRALVSSPFRSQLEGKWGKQLF 113
Query: 364 RGHAYVDHQTPEEIKE 379
+I E
Sbjct: 114 ALAEAELKTYSPDIVE 129
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint
center for structural genomics, JCSG; HET: MSE PLP CIT;
1.80A {Erwinia carotovora atroseptica}
Length = 354
Score = 29.5 bits (67), Expect = 4.2
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 725 NPAELDDWLSDLNPDSKVVIPEAYAE 750
++ W++ ++ ++ EAYAE
Sbjct: 159 PADVIEPWIASKPANTMFIVDEAYAE 184
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 29.9 bits (67), Expect = 4.2
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 281 PPEPNGYLHIGHA 293
P +G+LH+GHA
Sbjct: 42 FPYLSGHLHVGHA 54
>3sks_A Putative oligoendopeptidase F; structural genomics, center for
structural genomics of infec diseases, csgid, protease,
hydrolase; 2.05A {Bacillus anthracis}
Length = 567
Score = 29.7 bits (67), Expect = 4.2
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 307 GGYCYLRYD-DT-NPEAEK-KEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIR 363
G CY+R+ DT + ++ +++ D +VQ G + + S + +EL + +
Sbjct: 57 GNLCYIRHSVDTTDAFYKEEQDFFDEFSPVVQGYGTKYYNALIHSPFREELEAYYGKQLF 116
Query: 364 RGHAYVDHQTPEEI 377
+E+
Sbjct: 117 ALAECDLKTYSDEV 130
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 29.9 bits (67), Expect = 4.4
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 281 PPEPNGYLHIGHA 293
P +G+LH+GHA
Sbjct: 42 FPYLSGHLHVGHA 54
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 29.3 bits (66), Expect = 6.2
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 86 KIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEE 138
+ + ++E AF F GS E + + + + E+
Sbjct: 412 ILLSRERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQME---ELESIIEQ 461
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 6.3
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 17/46 (36%)
Query: 379 EYRE-KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ 423
E + KK+ + SLKL+ D + A L +K M+
Sbjct: 18 EKQALKKLQA---------SLKLYAD------DSAPA-LAIKATME 47
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 28.8 bits (64), Expect = 6.6
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 556 IGISRSDSLIRLDRLE-YHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAK 610
I ++ S + +D + T+PR + L+ K +T + I ++ K
Sbjct: 58 IVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPK 113
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 28.8 bits (64), Expect = 8.6
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 344 ITYTSDYFQELYELA------VELIRRGHAYVDHQTPEEIKEYREKKMNSP 388
TY DY Q L ++ + + H E I +R+ S
Sbjct: 369 YTYQGDYIQNLIDMTDYPSFDIPATNKTFLEWKHHKKENIMTFRDHSYRSL 419
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 28.7 bits (65), Expect = 9.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 281 PPEPNGYLHIGHA 293
PP NG LH+GHA
Sbjct: 56 PPYANGNLHMGHA 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.405
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,632,195
Number of extensions: 798378
Number of successful extensions: 2413
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2338
Number of HSP's successfully gapped: 76
Length of query: 798
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 697
Effective length of database: 3,881,772
Effective search space: 2705595084
Effective search space used: 2705595084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)