RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 003751
(798 letters)
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS)
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 258 bits (659), Expect = 5e-80
Identities = 168/326 (51%), Positives = 226/326 (69%), Gaps = 7/326 (2%)
Query: 262 KEVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPE 320
++++D+ L V TRFPPEPNGYLHIGHAK++ ++FG+A++ G C LR+DDTNP
Sbjct: 5 RQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPV 64
Query: 321 AEKKEYIDHIEEIVQWMGW-EPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKE 379
E EY++ I+ V+W+G+ + Y+SDYF +L+ A+ELI +G AYVD TPE+I+E
Sbjct: 65 KEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIRE 124
Query: 380 YRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAY 435
YR NSP+RDR + E+L LFE MR G EEGKA LR K DM + M D + Y
Sbjct: 125 YRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLY 184
Query: 436 RIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-Y 494
RIKF H G+KWCIYP YD+ HCI D++E ITHSLCTLEF+ R Y W+L + +
Sbjct: 185 RIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPV 244
Query: 495 QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQ 554
P +E+SRLN+ TVMSKRKLN LVT+K+V+GWDDP + T++GLRRRG T+ SI F +
Sbjct: 245 HPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCK 304
Query: 555 GIGISRSDSLIRLDRLEYHIREELNK 580
IG+++ D+ I + LE IRE+LN+
Sbjct: 305 RIGVTKQDNTIEMASLESCIREDLNE 330
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 193 bits (492), Expect = 2e-56
Identities = 63/325 (19%), Positives = 116/325 (35%), Gaps = 38/325 (11%)
Query: 276 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 335
V+TR P P G H+G A ++ A+ GG +R +DT+ + I ++
Sbjct: 2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALK 61
Query: 336 WMGWE---------PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMN 386
W+G P S+ + A EL++RG AY +TPEE+++ R++K
Sbjct: 62 WLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGG 121
Query: 387 SPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPH---P 443
R R + + R G+ + + + + D + + +
Sbjct: 122 YDGRARN------IPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPD 175
Query: 444 HAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQP-YVWEYS 502
K YP+Y A+ + D + +T + E+ + L A G P +
Sbjct: 176 VVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPL 235
Query: 503 RLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD 562
N T +SKRK +L + G ++ ++ +G S D
Sbjct: 236 LRNPDKTKISKRKS----------------HTSLDWYKAEGFLPEALRNYLCLMGFSMPD 279
Query: 563 SLIRLDR---LEYHIREELNKTAPR 584
++ E ++ P
Sbjct: 280 GREIFTLEEFIQAFTWERVSLGGPV 304
>d1gtra1 b.53.1.2 (A:339-547) Gln-tRNA synthetase (GlnRS),
C-terminal (anticodon-binding) domain {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 185 bits (470), Expect = 2e-54
Identities = 89/219 (40%), Positives = 124/219 (56%), Gaps = 18/219 (8%)
Query: 582 APRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRM 641
APR M V++P+K+VI N + G + P+ +VPFS ++I+ +DFR
Sbjct: 1 APRAMAVIDPVKLVIENYQ-GEGEMVTMPNHPN---KPEMGSRQVPFSGEIWIDRADFRE 56
Query: 642 KDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTK-------PK 694
+ +K Y L GK V LR A+ IK V D + I I YD +K K
Sbjct: 57 EANKQYKRLVLGKEVRLRNAYVIKAERVE-KDAEGNITTIFCTYDADTLSKDPADGRKVK 115
Query: 695 GVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLH 754
GV+HWV+ + L VE+RL+++LF+ NP DD+LS +NP+S V+ + +AEPSL
Sbjct: 116 GVIHWVSAA----HALPVEIRLYDRLFSVPNPGAADDFLSVINPESLVIK-QGFAEPSLK 170
Query: 755 SAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDS 792
A G FQFER GYF +D + ST EK VFNRTV L+D+
Sbjct: 171 DAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDT 209
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 161 bits (408), Expect = 4e-45
Identities = 43/273 (15%), Positives = 77/273 (28%), Gaps = 22/273 (8%)
Query: 275 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 334
+ RF P P+G LH G A + A+ R G +R +D +P E + I +
Sbjct: 2 QYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQL 61
Query: 335 QWMGWEPFKITYTSDY-FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRP 393
+ G E L +G +Y T I+
Sbjct: 62 EHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHH 121
Query: 394 IAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYP 453
+ +R + + + +I K +
Sbjct: 122 --------------GPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLF 167
Query: 454 SYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNVSNTVMS 512
+Y+ A + D + +T + + L G Y+ LN +S
Sbjct: 168 AYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLS 227
Query: 513 KRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVT 545
K+ + DP + +A L+ G
Sbjct: 228 KQNHAPAL------PKGDPRPVLIAALQFLGQQ 254
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 47.8 bits (112), Expect = 2e-06
Identities = 29/292 (9%), Positives = 79/292 (27%), Gaps = 25/292 (8%)
Query: 261 TKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLA---KERGGYCYLRYDDT 317
+++ + E + P+GY+H+G+ + +F + + +++G +
Sbjct: 7 ADKIIRERGE--KEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWD 64
Query: 318 -------NPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVD 370
P +E+ D++ + + +++F +E VE + +
Sbjct: 65 DYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLY 124
Query: 371 HQTPEEIKEYREKKMNSPWRDRPIA--------ESLKLFEDMRNGRIEEGKATLRMKQDM 422
+ EY E+ + + I + + R + ++
Sbjct: 125 ASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEI 184
Query: 423 Q---NDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFET 479
Y + K + + +
Sbjct: 185 IEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSS 244
Query: 480 RRASYFWLLHALGLYQPYVWEYSRLNVSNTV--MSKRKLNFLVTNKYVDGWD 529
+ G P Y + + MS K N ++ + + +
Sbjct: 245 YDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLE 296
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 38.8 bits (89), Expect = 0.002
Identities = 28/256 (10%), Positives = 58/256 (22%), Gaps = 8/256 (3%)
Query: 282 PEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGW 339
HIGH + +A+ GY + +K +
Sbjct: 30 ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMV 89
Query: 340 EPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRD-RPIAESL 398
+ D+ R H + E + + D +
Sbjct: 90 DRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD 149
Query: 399 KLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYA 458
+ + +++ +A R+ N + L + P + +
Sbjct: 150 PTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIEC 209
Query: 459 HCIV-----DSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSK 513
+ + + + G Y Y + V MSK
Sbjct: 210 SAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSK 269
Query: 514 RKLNFLVTNKYVDGWD 529
NF + +D
Sbjct: 270 SLGNFFTVRDVLKYYD 285
>d3bzna1 d.161.1.1 (A:2-429) Menaquinone-specific isochorismate
synthase MenF {Escherichia coli [TaxId: 562]}
Length = 428
Score = 37.5 bits (86), Expect = 0.005
Identities = 24/224 (10%), Positives = 54/224 (24%), Gaps = 37/224 (16%)
Query: 305 ERGGYCYLR---YDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTS-------DYFQEL 354
GG LR + +++ + + + + I +V +T T + +L
Sbjct: 115 RCGGKATLRLTLFSESSLQHDAIQAKEFIATLVSIKPLPGLHLTTTREQHWPDKTGWTQL 174
Query: 355 YELAVELIRRGHAY------------VDHQTPEEIKEYREKKMNSPWRDRP--------I 394
ELA + I G + + + + +
Sbjct: 175 IELATKTIAEGELDKVVLARATDLHFASPVNAAAMMAASRRLNLNCYHFYMAFDGENAFL 234
Query: 395 AESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCI--- 451
S + R+ + + + + + I
Sbjct: 235 GSSPERLWRRRDKALRTEALAGTVANNPDDKQAQQLGEWLMADDKNQRENMLVVEDICQR 294
Query: 452 ----YPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 491
+ D V + + H + +A LH L
Sbjct: 295 LQADTQTLDVLPPQVLRLRKVQHLRRCIWTSLNKADDVICLHQL 338
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 33.3 bits (75), Expect = 0.096
Identities = 30/310 (9%), Positives = 75/310 (24%), Gaps = 67/310 (21%)
Query: 281 PPEPNGYLHIGHA------------------KAMFV----DFGLAKERGGYCYLRYDDTN 318
P NG +H+GH + F+ G +
Sbjct: 10 LPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIML------KAQQLG 63
Query: 319 PEAEKKEYIDHIEEIVQWMG----WEPFKITYTSDYFQELYELAVELIRRGHAYV----- 369
E+ E + G ++ + T++ + Q + L G
Sbjct: 64 ITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQ 123
Query: 370 -----------DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRM 418
D + + +E L+ + + +
Sbjct: 124 LYDPEKGMFLPDRFVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEW 183
Query: 419 KQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFE 478
+ D + + P + Y + + S+ E+
Sbjct: 184 FESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYW 243
Query: 479 TRRAS-------------------YFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFL 519
+ ++ L + ++ + + V+ MSK + F+
Sbjct: 244 KKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFI 303
Query: 520 VTNKYVDGWD 529
+ +++ +D
Sbjct: 304 KASTWLNHFD 313
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 32.6 bits (73), Expect = 0.22
Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 30/118 (25%)
Query: 281 PPEPNGYLHIGHA------------------KAMFV----DFGLAKERGGYCYLRYDDTN 318
P P+G LH+GH + + FGL E +
Sbjct: 41 FPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAEN----AALKFGVH 96
Query: 319 PEAEKKEYIDHIEEIVQWMG----WEPFKITYTSDYFQELYELAVELIRRGHAYVDHQ 372
P+ I +E ++ MG W+ T +Y++ + +++ +G AY
Sbjct: 97 PKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKG 154
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp.
WBC-3 [TaxId: 165468]}
Length = 294
Score = 31.1 bits (69), Expect = 0.44
Identities = 16/148 (10%), Positives = 34/148 (22%), Gaps = 3/148 (2%)
Query: 316 DTNPEAEKKEYIDHIEEIVQWMGWEPFKITY---TSDYFQELYELAVELIRRGHAYVDHQ 372
DT + + ++ G++P ++ T + + L V V
Sbjct: 77 DTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGGLMVGEQLAFPNAVVRA 136
Query: 373 TPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 432
+E + + D K N ++ GK
Sbjct: 137 DQKEADFWLSQTNLDKAPDDESKGFFKGAMASLNPYVKAGKFKPFSGNTDLVPGIKALAS 196
Query: 433 IAYRIKFTPHPHAGDKWCIYPSYDYAHC 460
+ T + + D
Sbjct: 197 HGHTPGHTTYVVESQGQKLALLGDLILV 224
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 348
Score = 31.4 bits (70), Expect = 0.46
Identities = 23/222 (10%), Positives = 54/222 (24%), Gaps = 30/222 (13%)
Query: 282 PEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEP 341
P H GH ++ + G + + + +GWE
Sbjct: 17 PNIAKPFHAGHLRSTII--G--------------------------GFLANLYEKLGWEV 48
Query: 342 FKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLF 401
++ Y D+ ++ LAV R G+ + + I + + +S+ L
Sbjct: 49 IRMNYLGDWGKQFGLLAVGFERYGNE--EALVKDPIHHLFDVYVRINKDIEEEGDSIPLE 106
Query: 402 EDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCI 461
+ E K ++ + + T +
Sbjct: 107 QSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKES 166
Query: 462 VDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSR 503
+ ++ + L + V +
Sbjct: 167 MLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIVQKSDG 208
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 31.1 bits (69), Expect = 0.56
Identities = 26/150 (17%), Positives = 37/150 (24%), Gaps = 39/150 (26%)
Query: 276 VLTRFPPEPNGYLHIGHA------------------KAMFV----DFGLAKER------G 307
+ PP NG H+GHA A GL E G
Sbjct: 41 TVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLG 100
Query: 308 GYCYLRYDDTNPEAEKK-------EYIDHIEEIVQ----WMGWEPFKITYTSDYFQELYE 356
+ E + Y E + W+ E T Y + ++
Sbjct: 101 LKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWW 160
Query: 357 LAVELIRRGHAYVDHQTPEEIKEYREKKMN 386
L RG Y DH+ +
Sbjct: 161 SLKNLFDRGLLYRDHKVVPYCPRCGTPLSS 190
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 30.8 bits (68), Expect = 0.64
Identities = 28/282 (9%), Positives = 59/282 (20%), Gaps = 36/282 (12%)
Query: 281 PPEPNGYLHIGHA------------------KAMFV----DFGL-----AKERG------ 307
N H+GHA + F+ + G A+ G
Sbjct: 11 IYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAF 70
Query: 308 ---GYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRR 364
+ ++I EE + + K Y + + +
Sbjct: 71 VDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSC 130
Query: 365 GHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQN 424
Y + + E + + + K ++ E +
Sbjct: 131 ERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEV 190
Query: 425 DNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASY 484
+ I + D++ N +L E E R +
Sbjct: 191 LAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFW 250
Query: 485 FWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVD 526
H +G + + V +
Sbjct: 251 PHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLG 292
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 30.3 bits (67), Expect = 0.98
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 276 VLTRFPPEPNGYLHIGHA 293
V+ PP G LH+GHA
Sbjct: 37 VIFMPPPNVTGSLHMGHA 54
>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate
phosphoribosyltransferase EF2626 {Enterococcus faecalis
[TaxId: 1351]}
Length = 345
Score = 29.9 bits (67), Expect = 1.1
Identities = 19/131 (14%), Positives = 49/131 (37%), Gaps = 24/131 (18%)
Query: 309 YCYLRYDDTNPEAEK------KEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELI 362
+ ++ ++E E EEI + F Y D+ + ++
Sbjct: 224 QVWRITRKSDKKSEGDYVTLWNEDPRQEEEIYMFHPVHTFINKYVRDFEAR--PVLQDIF 281
Query: 363 RRGHAYVDHQTPEEIKEYREKKMNSPWRDR---------PIAESLKLFEDMRNGRIEEGK 413
G + T +EIK+Y ++ ++S + P+ S + + + +E+
Sbjct: 282 VEGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYPVDLSTDCW-NHKMNLLEK-- 338
Query: 414 ATLRMKQDMQN 424
+++D+++
Sbjct: 339 ----VRKDVKH 345
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 29.9 bits (66), Expect = 1.1
Identities = 30/212 (14%), Positives = 57/212 (26%), Gaps = 26/212 (12%)
Query: 276 VLTRFPPEPNGYLHIGHA------------KAM----------FVDFGLAKERGGYCYLR 313
+L PP NG LH+GHA K M + GL E+ +
Sbjct: 51 ILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQ---ALTK 107
Query: 314 YDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQT 373
+ E+ + +E K + + + L A
Sbjct: 108 KGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIF 167
Query: 374 PEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI 433
E + K P P +ES ++ K + + Q ++ +
Sbjct: 168 GEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYPHDWRTKKPVIFRATPQW-FASISKVR 226
Query: 434 AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSI 465
+ + + W Y+ + +
Sbjct: 227 QDILDAIENTNFKVNWGKTRIYNMVRDRGEWV 258
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
14 {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 29.7 bits (65), Expect = 1.3
Identities = 27/213 (12%), Positives = 59/213 (27%), Gaps = 5/213 (2%)
Query: 225 EEDLFPISNFPPPEENYKQVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEP 284
++ L I + E + P S++ E E
Sbjct: 112 QQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKEN 171
Query: 285 NGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKI 344
L + + F K R + T I + ++ + +
Sbjct: 172 QLQLSCFINQEVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRF 231
Query: 345 TYTSDYFQ---ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLF 401
Y L ++ L+ + + E++ +R K + D+ + +
Sbjct: 232 FYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDL--EDKKVNQQPNTS 289
Query: 402 EDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIA 434
+ + + E D+ ++N YDL A
Sbjct: 290 DKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQA 322
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 27.7 bits (61), Expect = 2.0
Identities = 27/151 (17%), Positives = 42/151 (27%), Gaps = 44/151 (29%)
Query: 279 RFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMG 338
R PPE N L+I + L Y T E + I Q
Sbjct: 1 RLPPEVNRILYIRN-------------------LPYKIT--AEEMYDIFGKYGPIRQIRV 39
Query: 339 WEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPI---- 394
RG AYV ++ + K + +R +
Sbjct: 40 GNTP-------------------ETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLY 80
Query: 395 AESLKLFEDMRNGRIEEGKATLRMKQDMQND 425
+ + F+ M + EE L+ K + D
Sbjct: 81 YNANRAFQKMDTKKKEEQLKLLKEKYGINTD 111
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 28.8 bits (63), Expect = 2.4
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 281 PPEPNGYLHIGHAKAMFV 298
P NG +H GH ++
Sbjct: 10 LPYANGPIHAGHLAGAYL 27
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium
meningosepticum, carbapenemase BLAB-1 [TaxId: 238]}
Length = 219
Score = 27.7 bits (60), Expect = 4.3
Identities = 17/216 (7%), Positives = 53/216 (24%), Gaps = 15/216 (6%)
Query: 271 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHI 330
T N N + + +D +++ + + H
Sbjct: 14 YTTYNTFNGTKYAANAVYLVTDKGVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHS 73
Query: 331 EEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPW- 389
+ + G E F Y ++ + + + A + K + +
Sbjct: 74 HD-DRAGGLEYFGKIGAKTYSTKMTDSILAKENKPRAQYTFDNNKSFKVGKSEFQVYYPG 132
Query: 390 ---RDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAG 446
+ + + G I + + + + + + +
Sbjct: 133 KGHTADNVVVWFPKEKVLVGGCIIKSADSKDLGYIGEAYVNDWTQSVHNIQQKFS----- 187
Query: 447 DKWCIYPSYDYAHCIVDSIENITHSLCTLE-FETRR 481
+ H +I H+L + ++ ++
Sbjct: 188 GAQYVVAG----HDDWKDQRSIQHTLDLINEYQQKQ 219
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537
{Pyrococcus furiosus [TaxId: 2261]}
Length = 447
Score = 27.6 bits (61), Expect = 6.3
Identities = 9/43 (20%), Positives = 22/43 (51%)
Query: 163 LPWADPKIVKQLIDARMYELLGERTAADIEKLSKKKEKKEKKE 205
LP+ P+ +++ + M+ +L ADI+ + + ++ K
Sbjct: 45 LPYEVPEKFRKIREIPMFIILDSGLLADIQNFATNEFRELVKS 87
>d1lgya_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizopus niveus
[TaxId: 4844]}
Length = 265
Score = 27.5 bits (60), Expect = 6.6
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 230 PISNFPPPEENYKQVHTE--IPFSDGSVLICCNTKEVLD 266
+ + PP + E I +V IC + E D
Sbjct: 201 IVPHVPPQSFGFLHPGVESWIKSGTSNVQICTSEIETKD 239
>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein
{Thermus thermophilus [TaxId: 274]}
Length = 80
Score = 25.6 bits (56), Expect = 7.8
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 175 IDARMYELLGER--TAADIEKLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPI 231
++ + LL ER +I +L + K E++ + P P+E + +
Sbjct: 13 VNREILRLLSERGRLVQEIGRLQTELGLPHYDPKREEEMLAYLTAENPGPFPDETIRKL 71
>d1tiba_ c.69.1.17 (A:) Triacylglycerol lipase {Thermomyces
lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]}
Length = 269
Score = 26.8 bits (58), Expect = 9.6
Identities = 12/52 (23%), Positives = 19/52 (36%)
Query: 230 PISNFPPPEENYKQVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFP 281
+ PP E Y E G+++ V + ++ TGGN P
Sbjct: 202 IVPRLPPREFGYSHSSPEYWIKSGTLVPVTRNDIVKIEGIDATGGNNQPNIP 253
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.405
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,108,493
Number of extensions: 156553
Number of successful extensions: 690
Number of sequences better than 10.0: 1
Number of HSP's gapped: 670
Number of HSP's successfully gapped: 38
Length of query: 798
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 705
Effective length of database: 1,130,706
Effective search space: 797147730
Effective search space used: 797147730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.3 bits)