Query 003752
Match_columns 798
No_of_seqs 266 out of 1381
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 11:26:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003752.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003752hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13355 DUF4101: Protein of u 100.0 9.7E-37 2.1E-41 286.0 14.3 116 675-791 1-117 (117)
2 COG0484 DnaJ DnaJ-class molecu 99.7 1.4E-17 3.1E-22 182.2 7.2 71 89-159 2-73 (371)
3 KOG0713 Molecular chaperone (D 99.6 3.8E-16 8.2E-21 167.7 5.9 69 90-158 15-84 (336)
4 KOG0691 Molecular chaperone (D 99.5 4.2E-15 9.1E-20 159.3 6.5 95 88-183 2-109 (296)
5 PRK14288 chaperone protein Dna 99.5 4.6E-15 1E-19 164.0 6.7 67 90-156 2-69 (369)
6 PRK14279 chaperone protein Dna 99.5 2.5E-14 5.4E-19 159.4 6.6 67 90-156 8-75 (392)
7 PRK14296 chaperone protein Dna 99.5 3.8E-14 8.3E-19 157.0 6.7 65 91-156 4-69 (372)
8 PRK14286 chaperone protein Dna 99.5 6.5E-14 1.4E-18 155.1 6.6 66 91-156 4-70 (372)
9 PRK14295 chaperone protein Dna 99.4 8E-14 1.7E-18 155.2 6.7 67 89-155 7-74 (389)
10 PRK14277 chaperone protein Dna 99.4 1E-13 2.3E-18 154.1 7.2 68 89-156 3-71 (386)
11 PRK14298 chaperone protein Dna 99.4 9.6E-14 2.1E-18 154.0 6.9 70 87-157 1-71 (377)
12 PRK14285 chaperone protein Dna 99.4 1.1E-13 2.3E-18 153.1 6.8 67 90-156 2-69 (365)
13 KOG0712 Molecular chaperone (D 99.4 1E-13 2.2E-18 150.5 6.3 67 90-159 3-70 (337)
14 PRK14282 chaperone protein Dna 99.4 1.7E-13 3.6E-18 151.7 7.1 68 90-157 3-72 (369)
15 PRK14278 chaperone protein Dna 99.4 1.8E-13 3.9E-18 151.9 6.9 66 90-156 2-68 (378)
16 PRK14284 chaperone protein Dna 99.4 1.9E-13 4.2E-18 152.2 6.9 67 91-157 1-68 (391)
17 PTZ00037 DnaJ_C chaperone prot 99.4 1.5E-13 3.3E-18 154.4 6.0 69 84-157 22-91 (421)
18 PF00226 DnaJ: DnaJ domain; I 99.4 2.1E-13 4.5E-18 113.9 5.1 62 92-153 1-64 (64)
19 PRK14287 chaperone protein Dna 99.4 2.5E-13 5.4E-18 150.5 7.1 66 91-157 4-70 (371)
20 PRK14294 chaperone protein Dna 99.4 2.7E-13 5.9E-18 149.8 7.1 68 90-157 3-71 (366)
21 PRK14299 chaperone protein Dna 99.4 2.9E-13 6.2E-18 145.4 6.6 67 90-157 3-70 (291)
22 PRK14297 chaperone protein Dna 99.4 2.6E-13 5.7E-18 150.6 6.1 67 91-157 4-71 (380)
23 PRK14291 chaperone protein Dna 99.4 3.2E-13 7E-18 150.1 6.7 67 90-157 2-69 (382)
24 PRK14301 chaperone protein Dna 99.4 3E-13 6.6E-18 149.9 6.3 68 90-157 3-71 (373)
25 PRK14283 chaperone protein Dna 99.4 3.6E-13 7.7E-18 149.5 6.8 67 90-157 4-71 (378)
26 PRK14281 chaperone protein Dna 99.4 3.5E-13 7.6E-18 150.5 6.7 68 90-157 2-70 (397)
27 PRK14276 chaperone protein Dna 99.4 4E-13 8.7E-18 149.2 6.2 65 91-156 4-69 (380)
28 PRK10767 chaperone protein Dna 99.4 6E-13 1.3E-17 147.2 7.0 68 90-157 3-71 (371)
29 PRK14290 chaperone protein Dna 99.4 6.3E-13 1.4E-17 146.9 6.6 67 90-156 2-70 (365)
30 KOG0718 Molecular chaperone (D 99.4 7.5E-13 1.6E-17 146.6 6.6 69 91-159 9-81 (546)
31 PRK14292 chaperone protein Dna 99.3 8.2E-13 1.8E-17 146.2 6.5 67 90-157 1-68 (371)
32 KOG0715 Molecular chaperone (D 99.3 8.5E-13 1.8E-17 141.8 6.4 67 92-159 44-111 (288)
33 PRK14280 chaperone protein Dna 99.3 8.8E-13 1.9E-17 146.3 6.4 66 91-157 4-70 (376)
34 PTZ00341 Ring-infected erythro 99.3 1.3E-12 2.8E-17 155.1 7.9 70 89-159 571-641 (1136)
35 TIGR02349 DnaJ_bact chaperone 99.3 1.6E-12 3.5E-17 143.0 6.1 65 92-157 1-66 (354)
36 PRK14289 chaperone protein Dna 99.3 2E-12 4.4E-17 143.8 6.9 68 90-157 4-72 (386)
37 PRK14293 chaperone protein Dna 99.3 1.8E-12 3.8E-17 143.8 6.4 66 90-156 2-68 (374)
38 KOG0716 Molecular chaperone (D 99.3 2E-12 4.3E-17 135.7 6.3 66 90-155 30-96 (279)
39 KOG0717 Molecular chaperone (D 99.3 1.8E-12 3.8E-17 143.7 5.9 65 91-155 8-74 (508)
40 PRK14300 chaperone protein Dna 99.3 1.8E-12 4E-17 143.6 5.8 65 91-156 3-68 (372)
41 PRK10266 curved DNA-binding pr 99.3 3.3E-12 7.3E-17 138.1 6.0 65 91-156 4-69 (306)
42 smart00271 DnaJ DnaJ molecular 99.2 1.2E-11 2.6E-16 101.7 6.2 58 91-148 1-60 (60)
43 cd06257 DnaJ DnaJ domain or J- 99.2 2.6E-11 5.7E-16 97.8 5.9 54 92-145 1-55 (55)
44 COG2214 CbpA DnaJ-class molecu 99.2 2.7E-11 5.9E-16 119.5 6.2 68 88-155 3-72 (237)
45 TIGR03835 termin_org_DnaJ term 99.1 1.1E-10 2.3E-15 136.6 7.5 68 91-159 2-70 (871)
46 KOG0719 Molecular chaperone (D 99.1 1E-10 2.3E-15 120.6 5.6 66 92-157 15-83 (264)
47 PRK05014 hscB co-chaperone Hsc 99.1 3.2E-09 6.8E-14 106.5 15.6 67 91-157 1-75 (171)
48 PRK03578 hscB co-chaperone Hsc 99.1 3.7E-09 7.9E-14 106.6 15.2 69 89-157 4-80 (176)
49 PHA03102 Small T antigen; Revi 99.0 1.5E-10 3.2E-15 114.1 4.5 66 92-161 6-74 (153)
50 KOG0721 Molecular chaperone (D 99.0 2.1E-10 4.6E-15 117.4 5.6 75 89-163 97-172 (230)
51 KOG0720 Molecular chaperone (D 99.0 3.6E-10 7.8E-15 125.7 5.6 69 90-159 234-303 (490)
52 PRK00294 hscB co-chaperone Hsc 99.0 7.4E-09 1.6E-13 104.2 13.8 67 91-157 4-78 (173)
53 PRK01356 hscB co-chaperone Hsc 98.9 3.5E-09 7.7E-14 105.8 6.9 67 91-157 2-74 (166)
54 KOG0624 dsRNA-activated protei 98.8 2.6E-09 5.7E-14 115.8 5.0 69 87-156 390-463 (504)
55 KOG0722 Molecular chaperone (D 98.8 4E-09 8.7E-14 110.1 4.9 124 91-251 33-157 (329)
56 KOG0550 Molecular chaperone (D 98.8 4.4E-09 9.4E-14 116.3 4.3 73 85-157 367-441 (486)
57 KOG0714 Molecular chaperone (D 98.7 5.5E-09 1.2E-13 108.4 4.2 68 90-157 2-71 (306)
58 PTZ00100 DnaJ chaperone protei 98.6 3.7E-08 7.9E-13 93.1 4.7 56 84-144 59-115 (116)
59 PRK09430 djlA Dna-J like membr 98.6 5.7E-08 1.2E-12 103.8 5.1 55 91-145 200-262 (267)
60 PHA02624 large T antigen; Prov 98.4 1.6E-07 3.4E-12 109.4 5.0 59 91-153 11-72 (647)
61 PRK01773 hscB co-chaperone Hsc 98.3 7.7E-06 1.7E-10 82.6 13.1 67 91-157 2-76 (173)
62 COG5407 SEC63 Preprotein trans 98.2 1.7E-06 3.8E-11 96.5 6.0 71 91-161 98-174 (610)
63 TIGR00714 hscB Fe-S protein as 98.1 5.7E-05 1.2E-09 75.1 13.5 55 103-157 3-63 (157)
64 COG5269 ZUO1 Ribosome-associat 97.7 2.9E-05 6.3E-10 82.4 4.4 69 91-159 43-117 (379)
65 KOG0568 Molecular chaperone (D 97.7 2.7E-05 5.9E-10 80.9 3.5 54 91-145 47-102 (342)
66 KOG1150 Predicted molecular ch 97.6 7.4E-05 1.6E-09 76.5 5.9 61 91-151 53-115 (250)
67 KOG0723 Molecular chaperone (D 96.8 0.0021 4.5E-08 60.2 5.3 48 94-145 59-107 (112)
68 PF12870 Lumazine_bd: Lumazine 94.5 0.063 1.4E-06 48.1 5.2 34 743-790 78-111 (111)
69 PRK13616 lipoprotein LpqB; Pro 94.4 0.21 4.5E-06 59.7 10.4 104 668-791 52-155 (591)
70 PF04280 Tim44: Tim44-like dom 93.4 0.9 2E-05 43.8 11.1 112 673-792 22-145 (147)
71 KOG1789 Endocytosis protein RM 93.2 0.092 2E-06 64.7 4.6 50 92-144 1282-1336(2235)
72 PRK13615 lipoprotein LpqB; Pro 92.6 0.63 1.4E-05 55.3 10.3 103 668-791 49-151 (557)
73 PRK13613 lipoprotein LpqB; Pro 91.6 1.7 3.7E-05 52.2 12.5 107 668-791 58-167 (599)
74 PF12883 DUF3828: Protein of u 90.7 0.33 7.1E-06 46.2 4.5 87 690-792 20-116 (120)
75 PRK13614 lipoprotein LpqB; Pro 89.8 1.5 3.2E-05 52.4 9.8 104 668-791 58-161 (573)
76 COG1076 DjlA DnaJ-domain-conta 89.0 0.24 5.2E-06 50.1 2.2 52 91-142 113-172 (174)
77 PF13577 SnoaL_4: SnoaL-like d 87.5 2.6 5.7E-05 38.4 7.9 60 727-792 67-126 (127)
78 KOG3192 Mitochondrial J-type c 86.6 0.87 1.9E-05 45.8 4.3 72 86-158 3-83 (168)
79 PF05494 Tol_Tol_Ttg2: Toluene 85.1 1.5 3.3E-05 43.7 5.3 56 725-794 80-137 (170)
80 PF14534 DUF4440: Domain of un 84.8 2.9 6.2E-05 36.5 6.4 51 732-789 57-107 (107)
81 TIGR03481 HpnM hopanoid biosyn 83.5 2.2 4.8E-05 44.2 5.9 55 725-794 106-160 (198)
82 PF13474 SnoaL_3: SnoaL-like d 83.1 4.3 9.4E-05 36.5 7.0 58 723-792 57-114 (121)
83 KOG0431 Auxilin-like protein a 83.1 1.6 3.4E-05 50.8 5.1 47 97-143 394-448 (453)
84 PF13446 RPT: A repeated domai 81.7 2.2 4.8E-05 35.9 4.2 30 92-121 6-35 (62)
85 TIGR02246 conserved hypothetic 77.4 26 0.00055 32.0 10.2 18 775-792 102-121 (128)
86 PF03656 Pam16: Pam16; InterP 72.1 5 0.00011 39.2 4.2 49 92-144 59-108 (127)
87 COG5517 Small subunit of pheny 71.0 9.4 0.0002 38.7 5.8 56 733-795 93-149 (164)
88 COG4319 Ketosteroid isomerase 67.5 19 0.0004 35.8 7.0 56 730-791 70-126 (137)
89 PF13424 TPR_12: Tetratricopep 64.2 23 0.0005 29.9 6.3 62 179-247 14-77 (78)
90 PF14559 TPR_19: Tetratricopep 64.0 14 0.00031 30.1 4.8 45 372-431 7-51 (68)
91 PF00866 Ring_hydroxyl_B: Ring 62.5 29 0.00063 34.1 7.4 76 711-795 54-136 (145)
92 TIGR00984 3a0801s03tim44 mitoc 62.1 63 0.0014 37.2 10.9 95 694-791 265-378 (378)
93 TIGR03232 benzo_1_2_benB benzo 61.8 25 0.00055 35.2 6.9 75 712-795 61-140 (155)
94 PF05223 MecA_N: NTF2-like N-t 61.2 23 0.0005 33.3 6.3 100 672-790 4-104 (118)
95 cd00667 ring_hydroxylating_dio 57.6 47 0.001 32.4 8.0 56 734-795 90-146 (160)
96 PF13432 TPR_16: Tetratricopep 56.5 28 0.0006 28.4 5.3 43 372-429 13-55 (65)
97 TIGR03231 anthran_1_2_B anthra 56.2 39 0.00086 33.8 7.2 22 774-795 119-140 (155)
98 PRK15117 ABC transporter perip 55.8 30 0.00066 36.3 6.6 54 727-794 112-168 (211)
99 COG1076 DjlA DnaJ-domain-conta 54.7 8 0.00017 39.2 2.1 68 92-159 2-77 (174)
100 PF12893 Lumazine_bd_2: Putati 53.4 39 0.00085 31.3 6.3 42 733-791 71-112 (116)
101 PF11833 DUF3353: Protein of u 51.1 11 0.00024 39.2 2.5 45 100-151 1-45 (194)
102 PRK11447 cellulose synthase su 47.7 2.9E+02 0.0063 36.0 14.8 45 370-429 283-327 (1157)
103 COG2854 Ttg2D ABC-type transpo 46.2 30 0.00066 36.4 4.8 55 726-794 113-169 (202)
104 PF13174 TPR_6: Tetratricopept 45.4 36 0.00079 23.7 3.8 24 406-429 1-24 (33)
105 PF08332 CaMKII_AD: Calcium/ca 41.7 1.2E+02 0.0027 29.7 7.9 51 733-791 68-121 (128)
106 PRK10049 pgaA outer membrane p 40.9 5.3E+02 0.011 32.0 15.1 43 372-429 409-451 (765)
107 TIGR02917 PEP_TPR_lipo putativ 39.7 5.2E+02 0.011 30.7 14.3 23 406-428 262-284 (899)
108 PRK10069 3-phenylpropionate di 38.1 1.2E+02 0.0026 31.0 7.5 56 734-795 111-168 (183)
109 PF13414 TPR_11: TPR repeat; P 37.4 1.3E+02 0.0028 24.5 6.5 56 179-245 12-67 (69)
110 cd00531 NTF2_like Nuclear tran 35.4 1.8E+02 0.004 25.1 7.5 24 771-794 98-121 (124)
111 TIGR02267 Myxococcus xanthus p 34.1 13 0.00027 36.0 -0.2 28 455-482 89-116 (123)
112 PF05309 TraE: TraE protein; 33.2 5E+02 0.011 26.5 11.2 77 705-794 106-182 (187)
113 PRK15174 Vi polysaccharide exp 31.7 1E+03 0.022 29.0 18.3 60 352-429 249-308 (656)
114 KOG4162 Predicted calmodulin-b 29.8 7.8E+02 0.017 31.1 13.5 131 174-306 398-545 (799)
115 PF13525 YfiO: Outer membrane 29.7 5.7E+02 0.012 26.1 11.0 78 181-259 53-130 (203)
116 PF13374 TPR_10: Tetratricopep 29.5 49 0.0011 24.1 2.4 24 671-694 17-40 (42)
117 PF12642 TpcC: Conjugative tra 29.1 90 0.002 32.5 5.1 54 721-791 174-232 (232)
118 PF12688 TPR_5: Tetratrico pep 28.1 1.9E+02 0.0041 27.9 6.7 57 178-243 9-65 (120)
119 PRK10803 tol-pal system protei 27.7 3.6E+02 0.0077 29.3 9.5 97 91-199 144-246 (263)
120 PF09543 DUF2379: Protein of u 27.4 20 0.00044 34.7 0.0 28 455-482 87-114 (121)
121 PF13432 TPR_16: Tetratricopep 27.2 2.8E+02 0.0062 22.3 6.8 55 179-245 6-60 (65)
122 PF12707 DUF3804: Protein of u 26.3 2.8E+02 0.0061 27.2 7.3 53 732-792 63-115 (128)
123 PF07721 TPR_4: Tetratricopept 25.8 84 0.0018 21.9 2.9 22 408-429 4-25 (26)
124 PF13371 TPR_9: Tetratricopept 25.7 1.3E+02 0.0028 24.8 4.6 26 404-429 28-53 (73)
125 TIGR02917 PEP_TPR_lipo putativ 24.6 1.2E+03 0.027 27.6 16.0 44 372-430 277-320 (899)
126 PRK15359 type III secretion sy 23.8 1.2E+02 0.0026 29.4 4.6 49 367-430 35-83 (144)
127 PF07719 TPR_2: Tetratricopept 23.3 1.5E+02 0.0033 20.6 4.0 29 215-245 2-30 (34)
128 KOG3081 Vesicle coat complex C 23.2 1.9E+02 0.0042 32.1 6.3 44 372-431 189-233 (299)
129 PLN03088 SGT1, suppressor of 23.1 2.1E+02 0.0046 32.1 7.0 57 352-430 39-95 (356)
130 PF15655 Imm-NTF2: NTF2 fold i 22.9 66 0.0014 31.3 2.6 17 775-791 101-117 (130)
131 TIGR02761 TraE_TIGR type IV co 22.3 8.5E+02 0.019 24.9 11.0 72 706-790 107-178 (181)
132 PF00515 TPR_1: Tetratricopept 21.9 1.1E+02 0.0024 21.7 3.0 25 405-429 1-25 (34)
133 TIGR02795 tol_pal_ybgF tol-pal 21.4 3.4E+02 0.0073 23.8 6.7 59 178-245 47-105 (119)
134 TIGR02552 LcrH_SycD type III s 21.2 3.7E+02 0.008 24.6 7.1 43 372-429 67-109 (135)
135 PF13414 TPR_11: TPR repeat; P 21.2 1.7E+02 0.0037 23.9 4.4 46 369-429 16-62 (69)
136 PRK11447 cellulose synthase su 21.1 1.9E+03 0.042 28.6 23.4 57 358-429 353-409 (1157)
137 CHL00033 ycf3 photosystem I as 21.1 6.4E+02 0.014 24.5 9.1 79 178-263 80-158 (168)
138 PRK15359 type III secretion sy 21.1 1.5E+02 0.0033 28.6 4.7 45 370-429 72-116 (144)
139 PF06287 DUF1039: Protein of u 20.9 2.2E+02 0.0048 25.2 5.0 47 370-431 7-53 (66)
140 TIGR00990 3a0801s09 mitochondr 20.4 1.5E+03 0.033 27.0 15.3 213 178-429 339-566 (615)
No 1
>PF13355 DUF4101: Protein of unknown function (DUF4101)
Probab=100.00 E-value=9.7e-37 Score=286.00 Aligned_cols=116 Identities=44% Similarity=0.717 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCcccccchhhHHHHHHHHHHHHHcCceEEeecceeeEEEEEecC-CCceeEEEEEEE
Q 003752 675 AEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQ-EGRHAWVEATVK 753 (798)
Q Consensus 675 Ae~lV~~Wq~aKa~AlGp~h~i~~L~eILtg~mL~~W~~~A~~l~~~~~y~~Y~l~~L~IdsV~~~~-~g~~A~VeA~V~ 753 (798)
|++||++||++|++||||+|+++.|++||+|+||++|++++++++++||||+|+ |+++|++|+++. +|++|+|+|+|+
T Consensus 1 A~~lv~~Wl~~Ka~alg~~~~~~~L~~vl~g~ll~~w~~~a~~~~~~g~y~~y~-~~~~I~sv~~~~~~~~ra~v~a~v~ 79 (117)
T PF13355_consen 1 AEQLVQRWLSAKAQALGPPHDIDSLSEVLTGPLLSQWQDRAQWLKANGWYWEYD-HKLKIDSVEVFSDSPNRATVEATVT 79 (117)
T ss_pred CHHHHHHHHHHHHHHhCCCcchhHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEe-eeeEEEEEEEcCCCCCeEEEEEEEE
Confidence 789999999999999999999999999999999999999999999999999999 999999999887 699999999999
Q ss_pred EEEeeeccCcCCCCCCcccceEEEEEEEEcCCceEEec
Q 003752 754 ESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITD 791 (798)
Q Consensus 754 E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~~g~WkI~~ 791 (798)
|+++||++|++.+++||++||+|||+|+|++|+|||+|
T Consensus 80 E~~~l~~~g~~~~~~s~~~~~~vrY~L~r~~~~WkI~d 117 (117)
T PF13355_consen 80 ESAQLYDNGQPDNNPSYDSTLRVRYELVRQNGQWKITD 117 (117)
T ss_pred EEEEEEeCCccccCCCCCCcEEEEEEEEEcCCEEEecC
Confidence 99999999999998899999999999999999999986
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.4e-17 Score=182.22 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=65.4
Q ss_pred cCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhcccCC
Q 003752 89 IPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADD 159 (798)
Q Consensus 89 iplDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~~~ 159 (798)
...|||+||||+++||.+|||||||+|+++ |||++...++++++|+.|+|||||||||++|+.||++....
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~ 73 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAG 73 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccc
Confidence 357999999999999999999999999998 79999867778999999999999999999999999887654
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.8e-16 Score=167.75 Aligned_cols=69 Identities=23% Similarity=0.328 Sum_probs=65.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhcccC
Q 003752 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLAD 158 (798)
Q Consensus 90 plDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~~ 158 (798)
..|||+||||+++|+..|||+|||||+++ |||+|.+++.+...|+.|+.||+|||||++|+.||...-+
T Consensus 15 ~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEe 84 (336)
T KOG0713|consen 15 GRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEE 84 (336)
T ss_pred CCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHh
Confidence 36999999999999999999999999998 8999999999999999999999999999999999987633
No 4
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4.2e-15 Score=159.35 Aligned_cols=95 Identities=23% Similarity=0.320 Sum_probs=82.6
Q ss_pred ccCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhcccCCCCCCCcc
Q 003752 88 SIPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILT 166 (798)
Q Consensus 88 ~iplDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~~~~~~~~~l 166 (798)
..-.|||.||||+.+|+..||++|||+++++ |||+|+.++.+.++|+.|.+||+||+|+++|+.||..++.+..+. ++
T Consensus 2 ~~~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~-~~ 80 (296)
T KOG0691|consen 2 VKDTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ-GR 80 (296)
T ss_pred cccchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch-hh
Confidence 3467999999999999999999999999987 899999888899999999999999999999999999988876554 22
Q ss_pred c------------CCCCccchhHHHHHHh
Q 003752 167 E------------VPWDKVPGALLVLQEA 183 (798)
Q Consensus 167 e------------i~~~~~~GaL~lLqEl 183 (798)
. ..+..++|++.+++|+
T Consensus 81 ~d~~~~~r~~f~~dl~~~~~~~~a~~~~~ 109 (296)
T KOG0691|consen 81 EDQADGFRKKFGSDLFERERGALALLKES 109 (296)
T ss_pred hhHHHHHHHHhhhhhhhhHHHHHhHHhhh
Confidence 2 2377788888888877
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=4.6e-15 Score=163.99 Aligned_cols=67 Identities=18% Similarity=0.306 Sum_probs=61.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhcc
Q 003752 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGL 156 (798)
Q Consensus 90 plDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l 156 (798)
..|||+||||+++||.+|||+|||+++++ |||++..+..++++|+.|++||+|||||++|+.||+..
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G 69 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYG 69 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhc
Confidence 57999999999999999999999999988 79998655567889999999999999999999999864
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=2.5e-14 Score=159.41 Aligned_cols=67 Identities=24% Similarity=0.412 Sum_probs=61.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhcc
Q 003752 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGL 156 (798)
Q Consensus 90 plDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l 156 (798)
..|||+||||+++|+.+|||+|||+++++ |||++...+.++++|+.|++||+|||||++|+.||+..
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G 75 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETR 75 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence 46999999999999999999999999988 79998766667889999999999999999999999864
No 7
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=3.8e-14 Score=156.95 Aligned_cols=65 Identities=23% Similarity=0.350 Sum_probs=59.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhcc
Q 003752 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGL 156 (798)
Q Consensus 91 lDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l 156 (798)
.|||+||||+++|+.+|||+|||+++++ |||++.+ ..++++|+.|++||+|||||++|+.||+..
T Consensus 4 ~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~~a~~~F~~i~~AyevLsD~~KR~~YD~~G 69 (372)
T PRK14296 4 KDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-PDAHDKMVEINEAADVLLDKDKRKQYDQFG 69 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-chHHHHHHHHHHHHHHhcCHHHhhhhhhcc
Confidence 6999999999999999999999999988 7999764 456789999999999999999999999864
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=6.5e-14 Score=155.13 Aligned_cols=66 Identities=21% Similarity=0.249 Sum_probs=61.1
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhcc
Q 003752 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGL 156 (798)
Q Consensus 91 lDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l 156 (798)
.|||+||||+++|+.+|||+|||+++++ |||++..+..++++|+.|++||+||+||++|+.||+..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G 70 (372)
T PRK14286 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFG 70 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhC
Confidence 5999999999999999999999999998 79998755667889999999999999999999999864
No 9
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=8e-14 Score=155.22 Aligned_cols=67 Identities=22% Similarity=0.397 Sum_probs=61.9
Q ss_pred cCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhc
Q 003752 89 IPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQG 155 (798)
Q Consensus 89 iplDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~ 155 (798)
+..|||+||||+++|+.+|||+|||+++++ |||++.....++++|+.|++||+||+||++|+.||+.
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~ 74 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEA 74 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHH
Confidence 467999999999999999999999999998 7999876666889999999999999999999999983
No 10
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1e-13 Score=154.12 Aligned_cols=68 Identities=22% Similarity=0.347 Sum_probs=62.5
Q ss_pred cCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhcc
Q 003752 89 IPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGL 156 (798)
Q Consensus 89 iplDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l 156 (798)
...|||+||||+++||.+|||+|||+++++ |||++.....++++|+.|++||+||+||++|+.||...
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G 71 (386)
T PRK14277 3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFG 71 (386)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhc
Confidence 357999999999999999999999999998 79998766667889999999999999999999999864
No 11
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=9.6e-14 Score=154.02 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=62.9
Q ss_pred cccCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 87 VSIPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 87 m~iplDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
|+.+.|||+||||+++|+.+|||+|||+++++ |||++.+ ..++++|+.|++||+||+||.+|+.||+...
T Consensus 1 ~~~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (377)
T PRK14298 1 MATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDAEKRAQYDRFGH 71 (377)
T ss_pred CCCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHHHhcchHhhhhhhhcCc
Confidence 56668999999999999999999999999988 7999754 4567899999999999999999999998753
No 12
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1.1e-13 Score=153.09 Aligned_cols=67 Identities=24% Similarity=0.260 Sum_probs=61.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhcc
Q 003752 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGL 156 (798)
Q Consensus 90 plDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l 156 (798)
..|||+||||+++||.+|||+|||+++++ |||++...+.++++|+.|++||+||+||++|..||...
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g 69 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFG 69 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcC
Confidence 46999999999999999999999999988 79998766677889999999999999999999999864
No 13
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1e-13 Score=150.45 Aligned_cols=67 Identities=21% Similarity=0.278 Sum_probs=61.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhcccCC
Q 003752 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADD 159 (798)
Q Consensus 90 plDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~~~ 159 (798)
...||+||||+++||.+|||||||+++++ |||++++ +.++|+.|.+||+|||||++|+.||+...+.
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~ 70 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEG 70 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhh
Confidence 46899999999999999999999999998 7999887 5579999999999999999999999986543
No 14
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1.7e-13 Score=151.66 Aligned_cols=68 Identities=22% Similarity=0.320 Sum_probs=61.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCCh-HHHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSP-DALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 90 plDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~-~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
..|||+||||+++||.+|||+|||+++++ |||++... ..++++|+.|++||+||+||++|+.||....
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~ 72 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGY 72 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCc
Confidence 36999999999999999999999999998 79997643 4578899999999999999999999998653
No 15
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1.8e-13 Score=151.87 Aligned_cols=66 Identities=23% Similarity=0.334 Sum_probs=60.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhcc
Q 003752 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGL 156 (798)
Q Consensus 90 plDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l 156 (798)
..|||+||||+++|+.+|||+|||+++++ |||++.+ ..++++|+.|++||+||+||++|+.||++.
T Consensus 2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G 68 (378)
T PRK14278 2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDPEKRRIVDLGG 68 (378)
T ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-HHHHHHHHHHHHHHHHhchhhhhhhhhccC
Confidence 36999999999999999999999999998 7999864 456789999999999999999999999863
No 16
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=1.9e-13 Score=152.22 Aligned_cols=67 Identities=24% Similarity=0.340 Sum_probs=62.1
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 91 lDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
.|||+||||+++||.+|||+|||+++++ |||++.+...++++|+.|++||+||+||++|+.||+...
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 68 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGK 68 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccc
Confidence 4899999999999999999999999998 899987766788899999999999999999999998643
No 17
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.41 E-value=1.5e-13 Score=154.37 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=60.2
Q ss_pred CCccccCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 84 NRHVSIPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 84 ~~~m~iplDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
.+.|. ..|||+||||+++||.+|||+|||+++++ |||++.+ .++|+.|++||+|||||++|+.||....
T Consensus 22 ~~~~~-~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~ 91 (421)
T PTZ00037 22 KREVD-NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGE 91 (421)
T ss_pred ccccc-chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence 34444 46999999999999999999999999988 7999743 3689999999999999999999998643
No 18
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.41 E-value=2.1e-13 Score=113.95 Aligned_cols=62 Identities=21% Similarity=0.353 Sum_probs=56.7
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChH-HHHHHHHHHHHHHHhccChhchHHHh
Q 003752 92 DFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPD-ALISRRQILQAACETLANASSRREYN 153 (798)
Q Consensus 92 DyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~-a~~~Rf~~L~eAYevLsDp~~R~~YD 153 (798)
|||+||||+++++.++||++|++++++ |||+..... .++.+|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 689999999999999999999999987 799865443 67889999999999999999999998
No 19
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=2.5e-13 Score=150.47 Aligned_cols=66 Identities=21% Similarity=0.344 Sum_probs=60.1
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 91 lDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
.|||+||||+++|+.+|||+|||+++++ |||++.+ ..++++|+.|++||+||+||++|+.||+...
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~ 70 (371)
T PRK14287 4 RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGH 70 (371)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCC
Confidence 6999999999999999999999999988 7999764 4567899999999999999999999998643
No 20
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=2.7e-13 Score=149.83 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=62.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 90 plDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
..|||+||||+++|+.+|||+|||+++++ |||++.+...++++|+.|++||+||+||.+|+.||++..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~ 71 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGH 71 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcc
Confidence 36999999999999999999999999998 799987666678899999999999999999999998653
No 21
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=2.9e-13 Score=145.40 Aligned_cols=67 Identities=22% Similarity=0.306 Sum_probs=60.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 90 plDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
..|||+||||+++||.+|||+|||+++++ |||++.+ ..++++|+.|++||+||+||++|+.||+...
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~ 70 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-PGAEEKFKEINEAYTVLSDPEKRRIYDTYGT 70 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 36999999999999999999999999998 7999764 4567899999999999999999999998643
No 22
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=2.6e-13 Score=150.64 Aligned_cols=67 Identities=21% Similarity=0.317 Sum_probs=61.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 91 lDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
.|||+||||+++|+.+|||+|||+++++ |||++.....++++|+.|++||+||+||.+|+.||+...
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~ 71 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGT 71 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCc
Confidence 5999999999999999999999999998 799987666788899999999999999999999998643
No 23
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=3.2e-13 Score=150.08 Aligned_cols=67 Identities=21% Similarity=0.353 Sum_probs=60.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 90 plDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
..|||+||||+++|+.+|||+|||+++++ |||++.+ ..++++|+.|++||+|||||.+|+.||....
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~ 69 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGH 69 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence 36999999999999999999999999988 7999765 4567899999999999999999999998653
No 24
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=3e-13 Score=149.87 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=62.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 90 plDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
..|||+||||+++||.+|||+|||+++++ |||++.+...++++|+.|++||+||+||.+|+.||....
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~ 71 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGH 71 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccc
Confidence 36999999999999999999999999998 799987666678899999999999999999999998653
No 25
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=3.6e-13 Score=149.49 Aligned_cols=67 Identities=21% Similarity=0.323 Sum_probs=61.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 90 plDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
..|||+||||+++|+.+|||+|||+++++ |||++.+ ..++++|+.|++||+||+||.+|+.||+...
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~ 71 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGH 71 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhcc
Confidence 57999999999999999999999999988 7999765 4578899999999999999999999999643
No 26
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=3.5e-13 Score=150.46 Aligned_cols=68 Identities=26% Similarity=0.320 Sum_probs=62.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 90 plDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
..|||+||||+++|+.+|||+|||+++++ |||++.+...++++|+.|++||+||+||.+|+.||....
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~ 70 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH 70 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 36999999999999999999999999988 799987666678899999999999999999999998643
No 27
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.37 E-value=4e-13 Score=149.23 Aligned_cols=65 Identities=26% Similarity=0.374 Sum_probs=59.6
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhcc
Q 003752 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGL 156 (798)
Q Consensus 91 lDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l 156 (798)
.|||+||||+++||.+|||+|||+++++ |||++.+ ..++++|+.|++||+||+||++|+.||+..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G 69 (380)
T PRK14276 4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQKRAAYDQYG 69 (380)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcCHhhhhhHhhcC
Confidence 5999999999999999999999999988 7999765 346789999999999999999999999864
No 28
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.37 E-value=6e-13 Score=147.25 Aligned_cols=68 Identities=24% Similarity=0.333 Sum_probs=61.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 90 plDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
..|||+||||+++||.+|||+|||+++++ |||++.....++++|+.|++||++|+||.+|+.||....
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~ 71 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGH 71 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccc
Confidence 46999999999999999999999999988 799986555678899999999999999999999998653
No 29
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.36 E-value=6.3e-13 Score=146.90 Aligned_cols=67 Identities=22% Similarity=0.382 Sum_probs=60.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCCh-HHHHHHHHHHHHHHHhccChhchHHHhhcc
Q 003752 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSP-DALISRRQILQAACETLANASSRREYNQGL 156 (798)
Q Consensus 90 plDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~-~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l 156 (798)
+.|||+||||+++|+.+|||+|||+++++ |||++... +.++++|+.|++||+||+||.+|+.||...
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G 70 (365)
T PRK14290 2 AKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTG 70 (365)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccC
Confidence 46999999999999999999999999988 79997644 367889999999999999999999999864
No 30
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=7.5e-13 Score=146.60 Aligned_cols=69 Identities=25% Similarity=0.319 Sum_probs=62.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChH---HHHHHHHHHHHHHHhccChhchHHHhhcccCC
Q 003752 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPD---ALISRRQILQAACETLANASSRREYNQGLADD 159 (798)
Q Consensus 91 lDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~---a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~~~ 159 (798)
.|||.+|||+++||+||||+|||++++. |||+.-+++ .++..|++|.+||||||||++|.+||....++
T Consensus 9 ~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qG 81 (546)
T KOG0718|consen 9 IELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQG 81 (546)
T ss_pred hhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcc
Confidence 4899999999999999999999999987 799976544 57888999999999999999999999987655
No 31
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.35 E-value=8.2e-13 Score=146.21 Aligned_cols=67 Identities=22% Similarity=0.326 Sum_probs=60.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 90 plDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
|+|||+||||+++||.+|||+|||+++++ |||++.+ ..++++|+.|++||+||+||.+|+.||....
T Consensus 1 ~~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~-~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~ 68 (371)
T PRK14292 1 MMDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-KGAAEKFAQINEAYAVLSDAEKRAHYDRFGT 68 (371)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-hhHHHHHHHHHHHHHHhcchhhhhhHhhcCC
Confidence 57999999999999999999999999988 7999764 4567899999999999999999999999754
No 32
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=8.5e-13 Score=141.79 Aligned_cols=67 Identities=21% Similarity=0.318 Sum_probs=62.5
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhcccCC
Q 003752 92 DFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADD 159 (798)
Q Consensus 92 DyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~~~ 159 (798)
|||+||||+++||..|||+||++|+++ |||.+.+. .+.++|+.|.+|||+|+|+++|++||..+...
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~-~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK-EASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc-chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 899999999999999999999999998 69988766 67889999999999999999999999988764
No 33
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.34 E-value=8.8e-13 Score=146.33 Aligned_cols=66 Identities=24% Similarity=0.353 Sum_probs=59.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 91 lDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
.|||+||||+++|+.+|||+|||+++++ |||++.+ ..++++|+.|++||+|||||.+|+.||+...
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 70 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFGH 70 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcCc
Confidence 5999999999999999999999999988 7999764 3467899999999999999999999998653
No 34
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.34 E-value=1.3e-12 Score=155.07 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=63.1
Q ss_pred cCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhcccCC
Q 003752 89 IPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADD 159 (798)
Q Consensus 89 iplDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~~~ 159 (798)
...+||+||||+++||.++||+|||+++++ |||++..+ .+..+|+.|.+||+|||||.+|+.||.....+
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~G 641 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDG 641 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence 346999999999999999999999999988 79998765 46679999999999999999999999987654
No 35
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.31 E-value=1.6e-12 Score=142.96 Aligned_cols=65 Identities=23% Similarity=0.353 Sum_probs=59.0
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 92 DFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 92 DyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
|||+||||+++|+.+|||+|||+++++ |||++. ...++++|+.|++||+||+|+.+|+.||....
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~ 66 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGH 66 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhccc
Confidence 799999999999999999999999998 799976 34467899999999999999999999998643
No 36
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.31 E-value=2e-12 Score=143.82 Aligned_cols=68 Identities=21% Similarity=0.299 Sum_probs=62.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 90 plDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
..|||+||||+++|+.+|||+|||+++++ |||++.....++++|+.|++||++|+||.+|+.||+...
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~ 72 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGH 72 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcc
Confidence 46999999999999999999999999987 899987666678899999999999999999999998643
No 37
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.31 E-value=1.8e-12 Score=143.80 Aligned_cols=66 Identities=26% Similarity=0.362 Sum_probs=60.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhcc
Q 003752 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGL 156 (798)
Q Consensus 90 plDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l 156 (798)
+.|||+||||+++|+.+|||+|||+++++ |||++.+ ..++++|+.|++||+||+||.+|+.||...
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g 68 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETRARYDQFG 68 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhchHHHHHHhhcc
Confidence 57999999999999999999999999988 8998754 446789999999999999999999999864
No 38
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2e-12 Score=135.73 Aligned_cols=66 Identities=21% Similarity=0.329 Sum_probs=61.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhc
Q 003752 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQG 155 (798)
Q Consensus 90 plDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~ 155 (798)
..|+|+|||++++|+.++||||||+++++ |||++.+++++..+|+.|++||++|+||.+|..||..
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~ 96 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEY 96 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHh
Confidence 67999999999999999999999999996 8999877677788999999999999999999999986
No 39
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.8e-12 Score=143.68 Aligned_cols=65 Identities=25% Similarity=0.353 Sum_probs=60.5
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCC-ChHHHHHHHHHHHHHHHhccChhchHHHhhc
Q 003752 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGF-SPDALISRRQILQAACETLANASSRREYNQG 155 (798)
Q Consensus 91 lDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~-s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~ 155 (798)
..||+||||..+|++++||++||+++++ |||++. ..+.+.++|++|+.||+|||||+.|.-||..
T Consensus 8 ~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~h 74 (508)
T KOG0717|consen 8 RCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSH 74 (508)
T ss_pred hHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHH
Confidence 4799999999999999999999999998 899954 5677899999999999999999999999975
No 40
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.30 E-value=1.8e-12 Score=143.63 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=59.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhcc
Q 003752 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGL 156 (798)
Q Consensus 91 lDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l 156 (798)
.|||+||||+++||.+|||+|||+++++ |||++.+ ..++++|+.|++||++|+|+.+|+.||+..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G 68 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-KDAEKKFKEINAAYDVLKDEQKRAAYDRFG 68 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhhhHhHhhHHHhcc
Confidence 6999999999999999999999999988 7998753 346779999999999999999999999864
No 41
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.27 E-value=3.3e-12 Score=138.07 Aligned_cols=65 Identities=25% Similarity=0.295 Sum_probs=59.3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhcc
Q 003752 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGL 156 (798)
Q Consensus 91 lDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l 156 (798)
.|||+||||+++|+.+|||+|||+++++ |||++.. ..++++|+.|++||++|+||.+|+.||...
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 5999999999999999999999999987 7999654 357889999999999999999999999864
No 42
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.24 E-value=1.2e-11 Score=101.68 Aligned_cols=58 Identities=22% Similarity=0.329 Sum_probs=52.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCC-hHHHHHHHHHHHHHHHhccChhc
Q 003752 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFS-PDALISRRQILQAACETLANASS 148 (798)
Q Consensus 91 lDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s-~~a~~~Rf~~L~eAYevLsDp~~ 148 (798)
.|||+||||+++++.++||++|++++++ |||++.. ......+|+.|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 3899999999999999999999999988 7999765 56678899999999999999853
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.20 E-value=2.6e-11 Score=97.80 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=49.3
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccC
Q 003752 92 DFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLAN 145 (798)
Q Consensus 92 DyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsD 145 (798)
|||+||||+++++.++||++|++++++ |||+....+....+|+.|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 799999999999999999999999988 799976546678899999999999987
No 44
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.7e-11 Score=119.55 Aligned_cols=68 Identities=24% Similarity=0.326 Sum_probs=61.9
Q ss_pred ccCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChH-HHHHHHHHHHHHHHhccChhchHHHhhc
Q 003752 88 SIPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPD-ALISRRQILQAACETLANASSRREYNQG 155 (798)
Q Consensus 88 ~iplDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~-a~~~Rf~~L~eAYevLsDp~~R~~YD~~ 155 (798)
..-.|||+||||+++|+.+|||+|||+++++ |||++.... .++++|+.|++||++|+|+..|..||..
T Consensus 3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 3456999999999999999999999999998 799987666 3889999999999999999999999985
No 45
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.10 E-value=1.1e-10 Score=136.57 Aligned_cols=68 Identities=22% Similarity=0.309 Sum_probs=61.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhcccCC
Q 003752 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADD 159 (798)
Q Consensus 91 lDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~~~ 159 (798)
.|||+||||+++|+.++||+|||+++++ |||++.+ ..+..+|+.|++||++|+||.+|..||.....+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG 70 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDG 70 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence 4899999999999999999999999988 7999766 456678999999999999999999999976544
No 46
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1e-10 Score=120.63 Aligned_cols=66 Identities=26% Similarity=0.375 Sum_probs=59.8
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCC--ChHHHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 92 DFYQALGAETHFLGDGIRRAYEARISK-PPQYGF--SPDALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 92 DyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~--s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
|.|+||||.++|++.+|+|||++++++ |||++. ....+...|++|+.||+||||.++|+.||....
T Consensus 15 d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 15 DLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred CHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 889999999999999999999999998 799974 334577889999999999999999999998754
No 47
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.07 E-value=3.2e-09 Score=106.52 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=56.5
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHhC-CCCCCCChH-----HHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 91 IDFYQALGAETH--FLGDGIRRAYEARISK-PPQYGFSPD-----ALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 91 lDyY~ILGV~~~--As~eeIKkAYRkla~~-~PDk~~s~~-----a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
.|||+||||+++ ++..+|+++||++.++ |||+..+.. .+.+++..|++||++|+||.+|..|+-.+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~ 75 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH 75 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence 389999999996 5789999999999887 899854321 245678999999999999999999997665
No 48
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.05 E-value=3.7e-09 Score=106.57 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=56.9
Q ss_pred cCCCcccccCCCCC--CCHHHHHHHHHHHHhC-CCCCCCChHHHHHH-----HHHHHHHHHhccChhchHHHhhccc
Q 003752 89 IPIDFYQALGAETH--FLGDGIRRAYEARISK-PPQYGFSPDALISR-----RQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 89 iplDyY~ILGV~~~--As~eeIKkAYRkla~~-~PDk~~s~~a~~~R-----f~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
.+.|||+||||++. ++..+|+++||++.++ |||+..+....+++ +..|++||++|+||.+|..|.-.+.
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~ 80 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR 80 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence 34799999999996 5789999999999887 89986443333333 5899999999999999999998765
No 49
>PHA03102 Small T antigen; Reviewed
Probab=99.04 E-value=1.5e-10 Score=114.13 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=58.5
Q ss_pred CcccccCCCCCC--CHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhcccCCCC
Q 003752 92 DFYQALGAETHF--LGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHA 161 (798)
Q Consensus 92 DyY~ILGV~~~A--s~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~~~~~ 161 (798)
.+|+||||+++| |.++||+|||+++++ |||++.++ ++|+.|++||++|+|+.+|..||........
T Consensus 6 ~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~----e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~ 74 (153)
T PHA03102 6 ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDE----EKMKELNTLYKKFRESVKSLRDLDGEEDSSS 74 (153)
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchh----HHHHHHHHHHHHHhhHHHhccccccCCcccc
Confidence 479999999999 999999999999887 89997543 5899999999999999999999998765543
No 50
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.1e-10 Score=117.44 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=66.0
Q ss_pred cCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhcccCCCCCC
Q 003752 89 IPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADT 163 (798)
Q Consensus 89 iplDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~~~~~~~ 163 (798)
.--|-|+|||+++.+|..|||||||+++++ |||+...++..++.|..|..||+.|+|++.|+.|......+.+..
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGpq~ 172 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGPQA 172 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCccc
Confidence 335889999999999999999999999998 799987767778889999999999999999999999876654443
No 51
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.6e-10 Score=125.73 Aligned_cols=69 Identities=22% Similarity=0.355 Sum_probs=62.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhcccCC
Q 003752 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADD 159 (798)
Q Consensus 90 plDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~~~ 159 (798)
-+|+|.+|||++++++++|||.||+++.- ||||+. .+.+++-|++|+.||++|+|+++|.+||..++..
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ke 303 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKE 303 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence 47999999999999999999999999875 999997 5667788999999999999999999999987654
No 52
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=98.97 E-value=7.4e-09 Score=104.16 Aligned_cols=67 Identities=18% Similarity=0.204 Sum_probs=57.2
Q ss_pred CCcccccCCCCCC--CHHHHHHHHHHHHhC-CCCCCCChH-----HHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 91 IDFYQALGAETHF--LGDGIRRAYEARISK-PPQYGFSPD-----ALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 91 lDyY~ILGV~~~A--s~eeIKkAYRkla~~-~PDk~~s~~-----a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
.+||++||++++. +.++|+++||++.++ |||+..+.. .+.+++..|++||+||+||.+|..|+-.+.
T Consensus 4 ~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 4 PCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 5899999999985 589999999999887 899854322 245678999999999999999999998775
No 53
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=98.86 E-value=3.5e-09 Score=105.75 Aligned_cols=67 Identities=24% Similarity=0.210 Sum_probs=56.7
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHhC-CCCCCCChHH---HHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 91 IDFYQALGAETH--FLGDGIRRAYEARISK-PPQYGFSPDA---LISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 91 lDyY~ILGV~~~--As~eeIKkAYRkla~~-~PDk~~s~~a---~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
.|||+||||+++ ++.++|+++||++.++ |||+..+... ..+.+..|++||++|+||.+|..|.-.+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 589999999997 6899999999999887 8999654322 23457799999999999999999988774
No 54
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.83 E-value=2.6e-09 Score=115.80 Aligned_cols=69 Identities=26% Similarity=0.387 Sum_probs=59.7
Q ss_pred cccCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChH----HHHHHHHHHHHHHHhccChhchHHHhhcc
Q 003752 87 VSIPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPD----ALISRRQILQAACETLANASSRREYNQGL 156 (798)
Q Consensus 87 m~iplDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~----a~~~Rf~~L~eAYevLsDp~~R~~YD~~l 156 (798)
..-..|||+||||.++|+..||.||||+++.+ |||. |.++ .++++|--|..|-+||+||++|+.+|.+-
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDN-FqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGe 463 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDN-FQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGE 463 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCcc-ccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCC
Confidence 34457999999999999999999999999988 7884 4433 47788999999999999999999999864
No 55
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=4e-09 Score=110.11 Aligned_cols=124 Identities=18% Similarity=0.266 Sum_probs=92.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhcccCCCCCCCcccCC
Q 003752 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILTEVP 169 (798)
Q Consensus 91 lDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~~~~~~~~~lei~ 169 (798)
-|||+||||+++++..||.||||+++.+ |||++..++. ..+|..|..||++|.|.+.|..||-.+..
T Consensus 33 enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~-k~~F~~iAtayeilkd~e~rt~ydyaldh----------- 100 (329)
T KOG0722|consen 33 ENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPES-KKLFVKIATAYEILKDNETRTQYDYALDH----------- 100 (329)
T ss_pred hhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchh-hhhhhhhhcccccccchhhHHhHHHHhcC-----------
Confidence 5899999999999999999999999998 5998776654 47899999999999999999999987531
Q ss_pred CCccchhHHHHHHhhhHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHHHHHHHh
Q 003752 170 WDKVPGALLVLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEE 249 (798)
Q Consensus 170 ~~~~~GaL~lLqElge~~~vl~~g~~~L~~~~~~~~~~Dv~Ls~ALA~~~larea~~~~~~~~~~a~~~Le~al~LL~~~ 249 (798)
.++++--.-++++..-+...-.|++|..-|+-.. .++ |-++|..+.+|+.-..+.
T Consensus 101 ----------------pd~~fynyyqyyr~r~apkvd~raviVGvl~i~s----~Fq-----yls~~ary~eAI~~~~~v 155 (329)
T KOG0722|consen 101 ----------------PDEVFYNYYQYYRARYAPKVDPRAVIVGVLVILS----AFQ-----YLSNVARYNEAIAYVKRV 155 (329)
T ss_pred ----------------chHHHHHHHHHHHHHhccccCCcEEEEeehhhhh----HHH-----HHHHHHHHHHHHHHHhcc
Confidence 1234433444555444344445566655555322 222 777888999999988876
Q ss_pred CC
Q 003752 250 GA 251 (798)
Q Consensus 250 g~ 251 (798)
++
T Consensus 156 pk 157 (329)
T KOG0722|consen 156 PK 157 (329)
T ss_pred hh
Confidence 54
No 56
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=4.4e-09 Score=116.28 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=64.7
Q ss_pred CccccCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCC-ChHHHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 85 RHVSIPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGF-SPDALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 85 ~~m~iplDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~-s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
=.|+...|||.||||+..|+.+|||+|||++++. |||++. +...++.+|+.+.+||.+|+||.+|.+||.+-.
T Consensus 367 LkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~d 441 (486)
T KOG0550|consen 367 LKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQD 441 (486)
T ss_pred HHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccc
Confidence 3456678999999999999999999999999997 699875 447789999999999999999999999998643
No 57
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=5.5e-09 Score=108.39 Aligned_cols=68 Identities=25% Similarity=0.365 Sum_probs=60.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCCh-HHHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSP-DALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 90 plDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~-~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
..|||+||||.++|+.+||++||++++++ |||++.+. ..++.+|..|.+||+||+|+.+|..||....
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 46999999999999999999999999987 89997665 3344589999999999999999999998765
No 58
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.61 E-value=3.7e-08 Score=93.14 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=47.1
Q ss_pred CCccccCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhcc
Q 003752 84 NRHVSIPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLA 144 (798)
Q Consensus 84 ~~~m~iplDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLs 144 (798)
+..|.. .++|+||||++++|.+|||++||+++++ |||++-+++ .|+.|++||++|.
T Consensus 59 ~~~Ms~-~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~----~~~kIneAyevL~ 115 (116)
T PTZ00100 59 ENPMSK-SEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTY----IASKVNEAKDLLL 115 (116)
T ss_pred cCCCCH-HHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHH----HHHHHHHHHHHHh
Confidence 445554 5899999999999999999999999887 799975543 4678999999985
No 59
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.56 E-value=5.7e-08 Score=103.80 Aligned_cols=55 Identities=29% Similarity=0.377 Sum_probs=48.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCC----Ch---HHHHHHHHHHHHHHHhccC
Q 003752 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGF----SP---DALISRRQILQAACETLAN 145 (798)
Q Consensus 91 lDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~----s~---~a~~~Rf~~L~eAYevLsD 145 (798)
.|+|+||||++++|.+|||+|||+++++ |||+.. ++ +.++++|+.|++||++|+.
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999987 799842 22 3577899999999999975
No 60
>PHA02624 large T antigen; Provisional
Probab=98.44 E-value=1.6e-07 Score=109.36 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=53.6
Q ss_pred CCcccccCCCCCC--CHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHh
Q 003752 91 IDFYQALGAETHF--LGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYN 153 (798)
Q Consensus 91 lDyY~ILGV~~~A--s~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD 153 (798)
.++|+||||+++| +.++||+|||+++++ |||++.+ .++|+.|++||++|+|+.+|..|.
T Consensus 11 ~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~~ 72 (647)
T PHA02624 11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQS 72 (647)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhcc
Confidence 4799999999999 999999999999988 7999754 357999999999999999999993
No 61
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.31 E-value=7.7e-06 Score=82.58 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=55.6
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHhC-CCCCCCChH-----HHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 91 IDFYQALGAETH--FLGDGIRRAYEARISK-PPQYGFSPD-----ALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 91 lDyY~ILGV~~~--As~eeIKkAYRkla~~-~PDk~~s~~-----a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
.|||+++|+++. .+..++++.|+++.++ |||+-.+.. .+.+.-..|++||.+|+||-+|..|=-.+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 489999999997 6899999999999887 899743322 233456789999999999999999988776
No 62
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.20 E-value=1.7e-06 Score=96.52 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=60.7
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCC-----hHHHHHHHHHHHHHHHhccChhchHHHhhcccCCCC
Q 003752 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFS-----PDALISRRQILQAACETLANASSRREYNQGLADDHA 161 (798)
Q Consensus 91 lDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s-----~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~~~~~ 161 (798)
-|-|+||||+.+++..+||++||++..+ ||||-.. .+..++....|..||+.|+|.+.|+.|-.....+.+
T Consensus 98 fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~p 174 (610)
T COG5407 98 FDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSP 174 (610)
T ss_pred CChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCC
Confidence 5889999999999999999999999988 7998532 335677889999999999999999999887655433
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.08 E-value=5.7e-05 Score=75.13 Aligned_cols=55 Identities=22% Similarity=0.211 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHhC-CCCCCC--Ch---HHHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752 103 FLGDGIRRAYEARISK-PPQYGF--SP---DALISRRQILQAACETLANASSRREYNQGLA 157 (798)
Q Consensus 103 As~eeIKkAYRkla~~-~PDk~~--s~---~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~ 157 (798)
-+..+|+++||++.++ |||+.. +. ..+...+..|++||++|+||.+|..|.-.+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 3678999999999887 899732 22 2356788999999999999999999998876
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=2.9e-05 Score=82.37 Aligned_cols=69 Identities=22% Similarity=0.282 Sum_probs=56.4
Q ss_pred CCcccccCCCC---CCCHHHHHHHHHHHHhC-CCCCCCC--hHHHHHHHHHHHHHHHhccChhchHHHhhcccCC
Q 003752 91 IDFYQALGAET---HFLGDGIRRAYEARISK-PPQYGFS--PDALISRRQILQAACETLANASSRREYNQGLADD 159 (798)
Q Consensus 91 lDyY~ILGV~~---~As~eeIKkAYRkla~~-~PDk~~s--~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~~~ 159 (798)
.|+|-+||++. .+++.+|++|.++.+.+ |||+... .-.-...|.+|+.||+||+|+.+|..||......
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~a 117 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDA 117 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccccc
Confidence 68999999997 88999999999998877 6997410 1112356999999999999999999999876544
No 65
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=2.7e-05 Score=80.94 Aligned_cols=54 Identities=24% Similarity=0.364 Sum_probs=48.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHH-hccC
Q 003752 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACE-TLAN 145 (798)
Q Consensus 91 lDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYe-vLsD 145 (798)
..||+||||...|+.++++.||.+++++ |||.| +.++..+||..|.+||. ||+.
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsg-s~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSG-SEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCC-CccccHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999998 79987 45566789999999997 8875
No 66
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=7.4e-05 Score=76.50 Aligned_cols=61 Identities=15% Similarity=0.243 Sum_probs=54.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCCh-HHHHHHHHHHHHHHHhccChhchHH
Q 003752 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSP-DALISRRQILQAACETLANASSRRE 151 (798)
Q Consensus 91 lDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~-~a~~~Rf~~L~eAYevLsDp~~R~~ 151 (798)
++-|+||.|.|..+.++||+-||+++.. |||++.++ +.+..-|..|..||..|-|+..|..
T Consensus 53 LNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 53 LNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred cChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 5889999999999999999999999775 99999876 6677789999999999999986654
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0021 Score=60.22 Aligned_cols=48 Identities=23% Similarity=0.203 Sum_probs=41.3
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHh-CCCCCCCChHHHHHHHHHHHHHHHhccC
Q 003752 94 YQALGAETHFLGDGIRRAYEARIS-KPPQYGFSPDALISRRQILQAACETLAN 145 (798)
Q Consensus 94 Y~ILGV~~~As~eeIKkAYRkla~-~~PDk~~s~~a~~~Rf~~L~eAYevLsD 145 (798)
-.||||+++++.+-||.|+|+... .|||+|-|+--+. .|+||+++|..
T Consensus 59 ~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAs----KINEAKdlLe~ 107 (112)
T KOG0723|consen 59 ALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLAS----KINEAKDLLEG 107 (112)
T ss_pred HHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHH----HHHHHHHHHhc
Confidence 469999999999999999999654 6899999886543 58999999975
No 68
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=94.55 E-value=0.063 Score=48.11 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=24.5
Q ss_pred CceeEEEEEEEEEEeeeccCcCCCCCCcccceEEEEEEEEcCCceEEe
Q 003752 743 GRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRIT 790 (798)
Q Consensus 743 g~~A~VeA~V~E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~~g~WkI~ 790 (798)
|+.|+|.++++ |.+|.. .+....|++.+|.|||+
T Consensus 78 g~~A~V~v~~~-----~~~g~~---------~~~~~~lvk~dg~Wkv~ 111 (111)
T PF12870_consen 78 GDTATVTVKIT-----YKDGKE---------KTFTVPLVKEDGKWKVC 111 (111)
T ss_dssp SSEEEEEEEEE-----ETTS-E---------EEEEEEEEEETTEEEE-
T ss_pred CCEEEEEEEEE-----ECCCCe---------eEEEEEEEEECCEEEeC
Confidence 89999977774 444322 23677899999999986
No 69
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.38 E-value=0.21 Score=59.67 Aligned_cols=104 Identities=18% Similarity=0.252 Sum_probs=67.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccchhhHHHHHHHHHHHHHcCceEEeecceeeEEEEEecCCCceeE
Q 003752 668 PRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAW 747 (798)
Q Consensus 668 P~lt~~~Ae~lV~~Wq~aKa~AlGp~h~i~~L~eILtg~mL~~W~~~A~~l~~~~~y~~Y~l~~L~IdsV~~~~~g~~A~ 747 (798)
|.++ .+.||+..+.+=+ +|..+-..-.++||.++=..|+... .--.|+ +|+.+....+.++++
T Consensus 52 ~ga~---p~~iVrgFl~A~a---~p~~~y~~AR~fLt~~aa~~W~p~~-------~~~V~d----~~~~~~~~~~~~~~~ 114 (591)
T PRK13616 52 PGMD---PDLLLRDFLKASA---DPANRHLAARQFLTESASNAWDDAG-------SALVID----RIDFNESTRSADRVT 114 (591)
T ss_pred CCCC---HHHHHHHHHHhcc---CCcchHHHHHHhcCHHHHcccCCCC-------cEEEEe----cCCcccccCCCccEE
Confidence 4566 6779999996633 5666777888999999999997543 223343 222222122344455
Q ss_pred EEEEEEEEEeeeccCcCCCCCCcccceEEEEEEEEcCCceEEec
Q 003752 748 VEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITD 791 (798)
Q Consensus 748 VeA~V~E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~~g~WkI~~ 791 (798)
|.++++=.+++-.+|.-.+.. ..++..|+|++.+|+|||.+
T Consensus 115 ~~v~~~~vg~l~~~G~y~~~~---~~~~~~~~l~~~dgqWRIs~ 155 (591)
T PRK13616 115 YTIRANIVGSLSDGGVFEPAN---GSLETPIELVKVDGEWRIDR 155 (591)
T ss_pred EEEEEEEEEEEcCCccEecCC---CCeeeeEEEEEECCEEEecc
Confidence 555554477777777533211 23345999999999999985
No 70
>PF04280 Tim44: Tim44-like domain; InterPro: IPR007379 Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane []. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005744 mitochondrial inner membrane presequence translocase complex; PDB: 2CW9_A 2FXT_A 3QK9_A.
Probab=93.40 E-value=0.9 Score=43.79 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCcccccchhhHHHHHHHHHHHHHcCceEEeecceeeEEEEEecC---CCceeEEE
Q 003752 673 RLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQ---EGRHAWVE 749 (798)
Q Consensus 673 ~~Ae~lV~~Wq~aKa~AlGp~h~i~~L~eILtg~mL~~W~~~A~~l~~~~~y~~Y~l~~L~IdsV~~~~---~g~~A~Ve 749 (798)
+.|+++...=|.+-.. =|++.|.+++++.||+.+....++.+.+|..-.-+ .+.|..+++.. +++.+.|.
T Consensus 22 ~~ak~~f~~i~~A~~~-----~D~~~l~~~~t~~~~~~~~~~i~~~~~~g~~~~~~--~v~i~~~~i~~~~~~~~~~~vt 94 (147)
T PF04280_consen 22 EEAKEAFLPIQEAWAK-----GDLEALRPLLTEELYERLQAEIKARRSRGEVNDPE--IVRIDNAEIVEAEQEGNFDQVT 94 (147)
T ss_dssp HHHHHTHHHHHHHHHH-----T-HHHHHHHB-HHHHHHHHHHHHHHHHTTEEEEEE--EEEEEEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHc-----CCHHHHHHHhCHHHHHHHHHHHHHHHHcCCcccce--EEEEEEEEeeeceeeCCEEEEE
Confidence 4455555553333322 36888999999999999999999988888555444 77888877444 56667666
Q ss_pred EEE--EEEEeeec-cCcCCCCCCcccceEEEE--EEEEc----CCceEEecc
Q 003752 750 ATV--KESARLTD-TVHPENCDEKISTYTTRY--ELSST----KSGWRITDG 792 (798)
Q Consensus 750 A~V--~E~a~Ly~-~g~~~~~~Sy~~ty~vRY--~L~r~----~g~WkI~~~ 792 (798)
+++ +..-..++ .|..-.+ +-.....+.| .|.|. ++.|++++.
T Consensus 95 v~f~~~~~~~~~d~~G~ii~G-~~~~~~~~~e~W~f~r~~~~~~~~W~L~~i 145 (147)
T PF04280_consen 95 VRFRSQQIDYVDDKDGEIIEG-DPDKIQEFTEYWTFERDLGSPNPNWRLAGI 145 (147)
T ss_dssp EEEEEEEEEEEETTTCTCCCC-STTS-EEEEEEEEEEE--TTCCCTEEEEEE
T ss_pred EEEEEEEEEEEECCCCcEeeC-CCCCceEEEEEEEEEEeCCCCCCCEEEEEE
Confidence 665 44434333 3443322 2222233444 44554 358999875
No 71
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=0.092 Score=64.74 Aligned_cols=50 Identities=22% Similarity=0.123 Sum_probs=41.1
Q ss_pred CcccccCCCC----CCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhcc
Q 003752 92 DFYQALGAET----HFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLA 144 (798)
Q Consensus 92 DyY~ILGV~~----~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLs 144 (798)
+-|+||.|+- +-..+.|||+|+|++.+ ||||++ + -.+.|..+++|||.|+
T Consensus 1282 ~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP--E-GRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1282 LAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP--E-GREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc--h-HHHHHHHHHHHHHHHH
Confidence 4799999986 33457899999999988 799974 2 3457999999999999
No 72
>PRK13615 lipoprotein LpqB; Provisional
Probab=92.59 E-value=0.63 Score=55.30 Aligned_cols=103 Identities=13% Similarity=0.184 Sum_probs=65.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccchhhHHHHHHHHHHHHHcCceEEeecceeeEEEEEecCCCceeE
Q 003752 668 PRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAW 747 (798)
Q Consensus 668 P~lt~~~Ae~lV~~Wq~aKa~AlGp~h~i~~L~eILtg~mL~~W~~~A~~l~~~~~y~~Y~l~~L~IdsV~~~~~g~~A~ 747 (798)
|.++ .+.||+-.+.+ .. +|..+-..-.++||+++=..|+... .---|+ .+++ ....+.+..+
T Consensus 49 ~ga~---Pd~iVrgFl~A-~a--~p~~dy~~AR~fLT~~Aa~~W~p~~-------~~~V~d----~~~~-~~~~~~~~~~ 110 (557)
T PRK13615 49 AGDG---PDDVIAGFVDA-AT--SSADQYGVARQFLSSDFASRWDPFA-------SVVVWE----GQAR-TSEEVDGTYS 110 (557)
T ss_pred CCCC---HHHHHHHHHHh-cc--CCCccHHHHHHHcChhHHcccCCCC-------ceEEEe----CCcc-ccCCCccEEE
Confidence 4566 67799999988 33 5555666778999999999997433 233344 1222 1112344555
Q ss_pred EEEEEEEEEeeeccCcCCCCCCcccceEEEEEEEEcCCceEEec
Q 003752 748 VEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITD 791 (798)
Q Consensus 748 VeA~V~E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~~g~WkI~~ 791 (798)
|.+++ .+++-.+|.-.+. ....+.+..|+|++.+|+|||.+
T Consensus 111 v~~~~--~g~ld~~G~y~~~-~~~~~~~~~f~l~k~dgqWRIs~ 151 (557)
T PRK13615 111 YSVTT--IATVDGQGHYREV-GSDQETRLSFQLVQERGEWRIAK 151 (557)
T ss_pred EEEEE--EEEECCCCcEEeC-CCCceeeeeEEEEEeCCEEEecc
Confidence 55555 7778776653331 11123456899999999999985
No 73
>PRK13613 lipoprotein LpqB; Provisional
Probab=91.64 E-value=1.7 Score=52.23 Aligned_cols=107 Identities=18% Similarity=0.195 Sum_probs=67.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccchhhHHHHHHHHHHHHHcCceEEeecceeeEEEEE--ecCCCce
Q 003752 668 PRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVT--LSQEGRH 745 (798)
Q Consensus 668 P~lt~~~Ae~lV~~Wq~aKa~AlGp~h~i~~L~eILtg~mL~~W~~~A~~l~~~~~y~~Y~l~~L~IdsV~--~~~~g~~ 745 (798)
|.++ .+.||+-.+.+ ...+ +.+-..-.++||+++=..|+... .---|+-. .+.... ...+++.
T Consensus 58 ~ga~---P~~iVrgFl~A-~a~~--~~dy~~AR~yLT~~aa~~W~P~~-------~v~V~d~~--~~~~~~~~~~~~~~~ 122 (599)
T PRK13613 58 EGAA---PAEIVQGFLEA-LTSF--DPDYETARKYLTGDAAKSWRPGG-------SVTVLAGA--PTVSADREGDREGDD 122 (599)
T ss_pred CCCC---HHHHHHHHHHh-ccCC--cccHHHHHHHcCHhHHcccCCCC-------ceEEEeCC--CcccccccccCCCcc
Confidence 3455 67799999988 4444 44555667999999999997533 33334411 111111 1224666
Q ss_pred eEEEEEEEEEEeeeccCcCCCC-CCcccceEEEEEEEEcCCceEEec
Q 003752 746 AWVEATVKESARLTDTVHPENC-DEKISTYTTRYELSSTKSGWRITD 791 (798)
Q Consensus 746 A~VeA~V~E~a~Ly~~g~~~~~-~Sy~~ty~vRY~L~r~~g~WkI~~ 791 (798)
++|.++.+=.+++-.+|.-.+. ..|.. ++.|+|++.+|+|||.+
T Consensus 123 ~~v~v~~~~vg~ld~~G~y~p~~~~~~~--~~~~~l~~~dgqWRIs~ 167 (599)
T PRK13613 123 ATVTLTGTRVATIDEDGQYVPASGGYYT--DVHLTLQDKTGQWRIDR 167 (599)
T ss_pred EEEEEEEEEEEEECCCCCEecCCCCeee--eeEEEEEecCCeEEecc
Confidence 7777777768888777753331 12222 36799999999999986
No 74
>PF12883 DUF3828: Protein of unknown function (DUF3828); InterPro: IPR024289 This domain currently has no known function.; PDB: 3KZT_A.
Probab=90.73 E-value=0.33 Score=46.24 Aligned_cols=87 Identities=13% Similarity=0.043 Sum_probs=47.6
Q ss_pred cCCCCCCCC-cccccchhhHHHHHHHHHH--HHHcCceEEee-------cceeeEEEEEecCCCceeEEEEEEEEEEeee
Q 003752 690 FGPDHSLGK-LPEVLDGQMLKVWTDRASE--IAQLGWTYDYS-------LLNLTIDSVTLSQEGRHAWVEATVKESARLT 759 (798)
Q Consensus 690 lGp~h~i~~-L~eILtg~mL~~W~~~A~~--l~~~~~y~~Y~-------l~~L~IdsV~~~~~g~~A~VeA~V~E~a~Ly 759 (798)
..|.++... +..+++..++.++....+. .--.--|+.+. +.+++|..+. .+++.|.|.+++
T Consensus 20 ~~~~~~~~~~~~~yvsk~~~~~l~~~~~~~~~~~D~D~f~~aQD~~~~w~~~i~v~~~~--~~~~~a~v~v~~------- 90 (120)
T PF12883_consen 20 KDPPADDEELMERYVSKETIAKLKKIYQLEQGILDFDYFIKAQDYDPDWVSNIKVGPAK--MDGDCAVVYVTF------- 90 (120)
T ss_dssp HHHHHHHHHHHHHHB-HHHHHHHHHHH----HHSSSBTTTTBSS--TTSGGG-EEEEEE--TTEEEEEEEETT-------
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHhhhhcccCCcCCCCceecccCChhhHhhEEEeecc--ccCCeEEEEEEE-------
Confidence 334444343 7777777777777654431 11111233222 2345555543 356667775544
Q ss_pred ccCcCCCCCCcccceEEEEEEEEcCCceEEecc
Q 003752 760 DTVHPENCDEKISTYTTRYELSSTKSGWRITDG 792 (798)
Q Consensus 760 ~~g~~~~~~Sy~~ty~vRY~L~r~~g~WkI~~~ 792 (798)
|. .+....++.|.|++++|+|||.+-
T Consensus 91 --G~-----~~~~~~~~~~~l~ke~g~WkI~~V 116 (120)
T PF12883_consen 91 --GK-----NNEKKQTVIVCLVKENGRWKIDDV 116 (120)
T ss_dssp --TS-----TT-EEEEEEEEEEEETTEEEEEEE
T ss_pred --ec-----CCCCCEEEEEEEEEECCEEEEEEe
Confidence 21 123556799999999999999864
No 75
>PRK13614 lipoprotein LpqB; Provisional
Probab=89.80 E-value=1.5 Score=52.42 Aligned_cols=104 Identities=13% Similarity=0.170 Sum_probs=63.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccchhhHHHHHHHHHHHHHcCceEEeecceeeEEEEEecCCCceeE
Q 003752 668 PRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAW 747 (798)
Q Consensus 668 P~lt~~~Ae~lV~~Wq~aKa~AlGp~h~i~~L~eILtg~mL~~W~~~A~~l~~~~~y~~Y~l~~L~IdsV~~~~~g~~A~ 747 (798)
|.++ .+.||+..+.+ .=+|..+-..-.++||.++=..|+... .--.|+ . .+.-+. ..+.+..+
T Consensus 58 ~ga~---p~~iVrgFl~A---~a~~~~~y~~AR~fLT~~aa~~W~p~~-------~~~V~~-~--~~~~~~-~~~~~~~~ 120 (573)
T PRK13614 58 PGAS---PETVIEGFYAA---GSGYEDDYAVARQYLTQAAATTWKPDQ-------RTLVFR-D--NPRVVK-TGNENEYN 120 (573)
T ss_pred CCCC---HHHHHHHHHHh---ccCCcccHHHHHHHcChHHHhccCCCC-------cEEEEe-c--Cccccc-cCCCcEEE
Confidence 4565 67799999977 334555666678999999999996433 333444 1 121121 11344555
Q ss_pred EEEEEEEEEeeeccCcCCCCCCcccceEEEEEEEEcCCceEEec
Q 003752 748 VEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITD 791 (798)
Q Consensus 748 VeA~V~E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~~g~WkI~~ 791 (798)
|++++ .+++-.+|.-.+. ....+.++.|+|++.+|+|||.+
T Consensus 121 v~~~v--~g~ld~~G~y~~~-~~~~~~~~~f~l~k~dgqWRIs~ 161 (573)
T PRK13614 121 YELDV--AYSVDADGIATQF-PEGTKETIPVTLTQVDGEWRISK 161 (573)
T ss_pred EEEEE--EEEEcCCCcEecC-CCCceeeeeEEEEEeCCeEEecc
Confidence 55555 6667666652220 11122345899999999999985
No 76
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.02 E-value=0.24 Score=50.11 Aligned_cols=52 Identities=29% Similarity=0.375 Sum_probs=42.7
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCC----CC---hHHHHHHHHHHHHHHHh
Q 003752 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYG----FS---PDALISRRQILQAACET 142 (798)
Q Consensus 91 lDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~----~s---~~a~~~Rf~~L~eAYev 142 (798)
.|-|.+|||..++..++|+++|+++... |||+- -. -+.+..+++.|++||+.
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~ 172 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYED 172 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999876 68852 11 23567788889999875
No 77
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=87.51 E-value=2.6 Score=38.45 Aligned_cols=60 Identities=27% Similarity=0.231 Sum_probs=35.9
Q ss_pred eecceeeEEEEEecCCCceeEEEEEEEEEEeeeccCcCCCCCCcccceEEEEEEEEcCCceEEecc
Q 003752 727 YSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDG 792 (798)
Q Consensus 727 Y~l~~L~IdsV~~~~~g~~A~VeA~V~E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~~g~WkI~~~ 792 (798)
...|-+.-..|++ +|+.|++.+.+.-......+| .+ .....-++..+|++.+|+|||...
T Consensus 67 ~~~H~~~~~~v~~--dgd~A~~~~~~~~~~~~~~~g--~~--~~~~~g~y~~~~~r~~g~W~i~~~ 126 (127)
T PF13577_consen 67 ATRHMVTNPVVDV--DGDTATVRSYVLATHRDPDDG--EP--ALWSGGRYTDELVREDGGWRISSR 126 (127)
T ss_dssp EEEEEEEEEEEEE--ETTEEEEEEEEEEEEEEETTT--EE--EEEEEEEEEEEEEEETTEEEEEEE
T ss_pred ceeEEccceEEEE--cCCEEEEEEEEEEEEEEcCCC--ce--EEEEEEEEEEEEEEECCEEEEEEE
Confidence 3334333333443 677899988885443333322 11 233444688889999999999864
No 78
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=86.58 E-value=0.87 Score=45.82 Aligned_cols=72 Identities=24% Similarity=0.354 Sum_probs=47.4
Q ss_pred ccccCCCcccccCCCCCC--CHHHHHHHHHHHHhC-CCCC------CCChHHHHHHHHHHHHHHHhccChhchHHHhhcc
Q 003752 86 HVSIPIDFYQALGAETHF--LGDGIRRAYEARISK-PPQY------GFSPDALISRRQILQAACETLANASSRREYNQGL 156 (798)
Q Consensus 86 ~m~iplDyY~ILGV~~~A--s~eeIKkAYRkla~~-~PDk------~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l 156 (798)
-|..|.+||.+.|..... .++-++--|-...++ |||+ +... .+.+.-..|++||.+|.||-+|+.|=-.+
T Consensus 3 ~~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d-~a~eqSa~lnkAY~TLk~pL~RA~Yilkl 81 (168)
T KOG3192|consen 3 KMGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTD-QASEQSAELNKAYDTLKDPLARARYLLKL 81 (168)
T ss_pred ccchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccch-hHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 356788999999877644 333344244443333 4553 3222 33344567999999999999999998877
Q ss_pred cC
Q 003752 157 AD 158 (798)
Q Consensus 157 ~~ 158 (798)
..
T Consensus 82 ~g 83 (168)
T KOG3192|consen 82 KG 83 (168)
T ss_pred hC
Confidence 64
No 79
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=85.06 E-value=1.5 Score=43.72 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=33.7
Q ss_pred EEeecceeeEEEEEecC--CCceeEEEEEEEEEEeeeccCcCCCCCCcccceEEEEEEEEcCCceEEeccce
Q 003752 725 YDYSLLNLTIDSVTLSQ--EGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSK 794 (798)
Q Consensus 725 ~~Y~l~~L~IdsV~~~~--~g~~A~VeA~V~E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~~g~WkI~~~~V 794 (798)
..|.-++++|.++.... +++.+.|.++|. ..+| ..+.|.|.|.+.+|+|||.|..+
T Consensus 80 ~~y~~~~v~~~~~~~~~~~~~~~~~V~t~i~-----~~~g---------~~i~v~y~l~~~~g~Wki~Dv~i 137 (170)
T PF05494_consen 80 DEYSGQSVEVLSEPPNGRKGGNRAIVRTEII-----SKDG---------QPIPVDYRLRKKDGKWKIYDVII 137 (170)
T ss_dssp HT-SS-EEEE------S-TT-SEEEEEEEEE-----ET-T---------EEEEEEEEEEEETTEEEEEEEEE
T ss_pred HhhCCCeEEEEeccCCCCCCCCEEEEEEEEE-----cCCC---------CcEEEEEEEEEcCCCeEEEEEEE
Confidence 34554667777776544 367899977772 1111 45679999999899999999765
No 80
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=84.80 E-value=2.9 Score=36.52 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=28.2
Q ss_pred eeEEEEEecCCCceeEEEEEEEEEEeeeccCcCCCCCCcccceEEEEEEEEcCCceEE
Q 003752 732 LTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRI 789 (798)
Q Consensus 732 L~IdsV~~~~~g~~A~VeA~V~E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~~g~WkI 789 (798)
++++.+++...|+.|.|.... ..+...+|+ .-....+.-+.+++++|.|||
T Consensus 57 ~~~~~~~v~~~gd~a~~~~~~--~~~~~~~g~-----~~~~~~~~~~v~~k~~g~W~i 107 (107)
T PF14534_consen 57 IKFEDVEVRVLGDTAVVRGRW--TFTWRGDGE-----PVTIRGRFTSVWKKQDGKWRI 107 (107)
T ss_dssp EEEEEEEEEEETTEEEEEEEE--EEEETTTTE-----EEEEEEEEEEEEEEETTEEEE
T ss_pred EEEEEEEEEEECCEEEEEEEE--EEEEecCCc-----eEEEEEEEEEEEEEeCCEEEC
Confidence 344444444448888776554 322322221 111344566777778999998
No 81
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=83.49 E-value=2.2 Score=44.22 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=36.9
Q ss_pred EEeecceeeEEEEEecCCCceeEEEEEEEEEEeeeccCcCCCCCCcccceEEEEEEEEcCCceEEeccce
Q 003752 725 YDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSK 794 (798)
Q Consensus 725 ~~Y~l~~L~IdsV~~~~~g~~A~VeA~V~E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~~g~WkI~~~~V 794 (798)
..|.-++++|.+++.. +++++.|..+|. .++| ..+.|-|.|...+|+|||.|..|
T Consensus 106 ~~y~~~~i~v~~~~~~-~~~~~~V~t~i~-----~~~g---------~~i~V~y~l~~~~g~WkV~DV~i 160 (198)
T TIGR03481 106 KSYAGERFEVEEQQPS-PRGRVIVRSTIV-----SDGG---------DPVKFDYIMRQGQGKWRIVDILA 160 (198)
T ss_pred HhhcCceEEEeecccC-CCCCEEEEEEEE-----cCCC---------CcEEEEEEEEecCCCeEEEEEEE
Confidence 3466666777776543 455677755552 1222 35669999998889999999866
No 82
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=83.14 E-value=4.3 Score=36.51 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=35.8
Q ss_pred ceEEeecceeeEEEEEecCCCceeEEEEEEEEEEeeeccCcCCCCCCcccceEEEEEEEEcCCceEEecc
Q 003752 723 WTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDG 792 (798)
Q Consensus 723 ~y~~Y~l~~L~IdsV~~~~~g~~A~VeA~V~E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~~g~WkI~~~ 792 (798)
--+.|...+++| ..+++.|.|.... ..++-.+++ .+....++.+.+++.+|.|||...
T Consensus 57 ~~~~~~~~~~~v-----~~~~~~a~~~~~~--~~~~~~~~~-----~~~~~~r~t~v~~k~~~~Wki~h~ 114 (121)
T PF13474_consen 57 RPISIEFEDVQV-----SVSGDVAVVTGEF--RLRFRNDGE-----EIEMRGRATFVFRKEDGGWKIVHI 114 (121)
T ss_dssp SEEEEEEEEEEE-----EEETTEEEEEEEE--EEEEECTTC-----EEEEEEEEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEEEEEE-----EECCCEEEEEEEE--EEEEecCCc-----cceeeEEEEEEEEEECCEEEEEEE
Confidence 355666555555 2357777776544 333332222 234566788888889999999864
No 83
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=83.13 E-value=1.6 Score=50.83 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=33.4
Q ss_pred cCCCCCCCHHHHHHHHHHHHhC-CCCCC----CChH---HHHHHHHHHHHHHHhc
Q 003752 97 LGAETHFLGDGIRRAYEARISK-PPQYG----FSPD---ALISRRQILQAACETL 143 (798)
Q Consensus 97 LGV~~~As~eeIKkAYRkla~~-~PDk~----~s~~---a~~~Rf~~L~eAYevL 143 (798)
.++..=.+.++|||||||.++. ||||- ++.. .+++=|.+|++||..-
T Consensus 394 VsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 394 VSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred CchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 3455667999999999999987 99973 3332 2344477777777654
No 84
>PF13446 RPT: A repeated domain in UCH-protein
Probab=81.73 E-value=2.2 Score=35.91 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=26.6
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHhCCCC
Q 003752 92 DFYQALGAETHFLGDGIRRAYEARISKPPQ 121 (798)
Q Consensus 92 DyY~ILGV~~~As~eeIKkAYRkla~~~PD 121 (798)
+-|++|||+++.+++.|..+|+.+....|+
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~~~P~ 35 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVNDDPS 35 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHHcChH
Confidence 469999999999999999999999986554
No 85
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=77.40 E-value=26 Score=31.97 Aligned_cols=18 Identities=11% Similarity=0.335 Sum_probs=12.9
Q ss_pred EEEEE--EEEcCCceEEecc
Q 003752 775 TTRYE--LSSTKSGWRITDG 792 (798)
Q Consensus 775 ~vRY~--L~r~~g~WkI~~~ 792 (798)
..+|+ +++.+|+|||...
T Consensus 102 ~~~~t~~~~~~~g~W~I~~~ 121 (128)
T TIGR02246 102 AVRLTFVAVKRDGRWLLAAD 121 (128)
T ss_pred ceEEEEEEEeeCCeEEEEec
Confidence 34554 7777899999754
No 86
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=72.11 E-value=5 Score=39.25 Aligned_cols=49 Identities=22% Similarity=0.202 Sum_probs=32.7
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhcc
Q 003752 92 DFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLA 144 (798)
Q Consensus 92 DyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLs 144 (798)
.-.+||||++..+.++|.+-|.++-.. .|++|-|.- +. ..|-.|.|.|-
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfY-LQ---SKV~rAKErl~ 108 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFY-LQ---SKVFRAKERLE 108 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HH-HH---HHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHH-HH---HHHHHHHHHHH
Confidence 357999999999999999999999876 599886643 22 23556777664
No 87
>COG5517 Small subunit of phenylpropionate dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=71.03 E-value=9.4 Score=38.66 Aligned_cols=56 Identities=25% Similarity=0.363 Sum_probs=37.7
Q ss_pred eEEEEEecC-CCceeEEEEEEEEEEeeeccCcCCCCCCcccceEEEEEEEEcCCceEEecccee
Q 003752 733 TIDSVTLSQ-EGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSKI 795 (798)
Q Consensus 733 ~IdsV~~~~-~g~~A~VeA~V~E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~~g~WkI~~~~Vi 795 (798)
.|-+|++.. +++...| ++.=.+-.| +.+..+||+.+ .+|+|...+++|||..-.||
T Consensus 93 ~isNvqi~~~~~~~~~v--R~N~~~~~~---r~~~~~tffg~--t~y~l~~~~e~~~i~~r~iv 149 (164)
T COG5517 93 LISNVQILEVDDGLVRV--RVNYLTFRY---RYDETDTFFGT--TRYDLDVRGEGWRIASRKIV 149 (164)
T ss_pred eeccceEEeecCCEEEE--EEeEEEEEE---eccccceEeee--EEEEeeccCCcceeeeeEEE
Confidence 566666666 5654444 443344444 34555677777 99999999999999987664
No 88
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=67.52 E-value=19 Score=35.84 Aligned_cols=56 Identities=18% Similarity=0.379 Sum_probs=36.1
Q ss_pred ceeeEEEEEecCCCceeEEEEEEEEEEeeeccCcCCCCCCcccceEEEEEEEEcC-CceEEec
Q 003752 730 LNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTK-SGWRITD 791 (798)
Q Consensus 730 ~~L~IdsV~~~~~g~~A~VeA~V~E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~~-g~WkI~~ 791 (798)
+.++..-+.+..+|+-|.+.+...=..+ +.+|++. ...+++.|-++++. |+|||.-
T Consensus 70 ~~f~~~el~v~~~GD~a~~~~~~~~~~~-~~dg~~~-----~~~~Rat~v~rK~~dg~Wk~~~ 126 (137)
T COG4319 70 LKFTLEELQVHESGDVAFVTALLLLTGT-KKDGPPA-----DLAGRATYVFRKEADGGWKLAH 126 (137)
T ss_pred CcceeeeeeeeccCCEEEEEEeeeeecc-CCCCcch-----hheeeeEEEEEEcCCCCEEEEE
Confidence 3445555566679999988666533333 2333322 26778888888875 7999874
No 89
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=64.19 E-value=23 Score=29.91 Aligned_cols=62 Identities=23% Similarity=0.266 Sum_probs=42.1
Q ss_pred HHHHhhhHHHHHHHHHHHhhh--cCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHHHHHH
Q 003752 179 VLQEAGETEVVLRIGESLLRE--RLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQ 247 (798)
Q Consensus 179 lLqElge~~~vl~~g~~~L~~--~~~~~~~~Dv~Ls~ALA~~~larea~~~~~~~~~~a~~~Le~al~LL~ 247 (798)
++++.|++++++++-+++|+- ..+. ...+ +|.++..+|.--...+ +++.|.+.+++++++.+
T Consensus 14 ~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~----~a~~~~~lg~~~~~~g--~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 14 VYRELGRYDEALDYYEKALDIEEQLGD-DHPD----TANTLNNLGECYYRLG--DYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHH----HHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHH----HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhhc
Confidence 678999999999999999964 2222 1222 2444555554444443 59999999999999876
No 90
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=63.97 E-value=14 Score=30.14 Aligned_cols=45 Identities=22% Similarity=0.198 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhCCCCccccccccccccchhhhhhHHHHHHHHHhhCChhHHHHHhccC
Q 003752 372 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLD 431 (798)
Q Consensus 372 I~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~le~a~C~LLLGq~~eA~~~l~l~ 431 (798)
..+|..+|+++.+.. ....++.+..+.|++-.|+.++|...|..-
T Consensus 7 ~~~A~~~~~~~l~~~---------------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 7 YDEAIELLEKALQRN---------------PDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHHHHHHHT---------------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467888888887543 234599999999999999999999999644
No 91
>PF00866 Ring_hydroxyl_B: Ring hydroxylating beta subunit; InterPro: IPR000391 The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonhaem iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centres to a terminal dioxygenase []. Aromatic-ring-hydroxylating dioxygenases oxidise aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilise a mononuclear non-haem iron centre to catalyse the addition of dioxygen to their respective substrates. Naphthalene 1,2-dioxygenase (NDO) from Pseudomonas sp. NCIB9816-4 has a domain structure and iron coordination of the Rieske domain is very similar to that of the cytochrome bc1 domain. The active-site iron centre of one of the alpha subunits is directly connected by hydrogen bonds through a single amino acid, Asp205, to the Rieske [2Fe-2S] centre in a neighbouring alpha subunit. This may be the main route for electron transfer [].; GO: 0003824 catalytic activity, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 1ULJ_B 1ULI_D 1WQL_B 2GBX_D 2GBW_B 2XSH_D 2XR8_X 2XRX_V 2YFL_B 2YFJ_J ....
Probab=62.49 E-value=29 Score=34.08 Aligned_cols=76 Identities=14% Similarity=0.176 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCceE-----EeecceeeEEEEEecC--CCceeEEEEEEEEEEeeeccCcCCCCCCcccceEEEEEEEEc
Q 003752 711 WTDRASEIAQLGWTY-----DYSLLNLTIDSVTLSQ--EGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSST 783 (798)
Q Consensus 711 W~~~A~~l~~~~~y~-----~Y~l~~L~IdsV~~~~--~g~~A~VeA~V~E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~ 783 (798)
..+|+..++. +..| .++.| -|.+|.+.. +++..+|.+.+ . +|..-.......| ..+..|.|++.
T Consensus 54 L~~RV~rl~~-~~~~se~P~srtrh--~vsnv~v~~~~~~~~~~v~s~f--~--v~r~r~~~~~~~~--~G~~~d~lr~~ 124 (145)
T PF00866_consen 54 LEDRVERLRT-GRAWSEDPPSRTRH--FVSNVRVEETEDGGEIEVRSNF--L--VYRSRLDGDQDLF--AGRREDVLRRT 124 (145)
T ss_dssp HHHHHHHHHS-TTHGGGSS--EEEE--EEEEEEEEEESSTTEEEEEEEE--E--EEEEETTTEEEEE--EEEEEEEEEEE
T ss_pred HHHHHHHHhc-CCccccCCCceeEE--EEcCEEEEEecCCCEEEEEEEE--E--EEEEcCCCcEEEE--EEEEEEEEEEe
Confidence 4677888754 4444 23335 455666444 67777777666 3 3321111111122 45799999999
Q ss_pred CCceEEecccee
Q 003752 784 KSGWRITDGSKI 795 (798)
Q Consensus 784 ~g~WkI~~~~Vi 795 (798)
+|+|||..=.|+
T Consensus 125 ~~~~ki~~R~v~ 136 (145)
T PF00866_consen 125 DGGLKIARRRVV 136 (145)
T ss_dssp SSSEEEEEEEEE
T ss_pred CCEEEEEEEEEE
Confidence 999999876553
No 92
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=62.10 E-value=63 Score=37.17 Aligned_cols=95 Identities=17% Similarity=0.222 Sum_probs=63.6
Q ss_pred CCCCCcccccchhhHHHHHHHHHHHHHcCceEEeecceeeEEEEEecC-----CCceeEEEEEE-EEEEeeecc---CcC
Q 003752 694 HSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQ-----EGRHAWVEATV-KESARLTDT---VHP 764 (798)
Q Consensus 694 h~i~~L~eILtg~mL~~W~~~A~~l~~~~~y~~Y~l~~L~IdsV~~~~-----~g~~A~VeA~V-~E~a~Ly~~---g~~ 764 (798)
-|++.|...|.+.++..+-..+++-.++|.+.+..+. .|++|++.. +++.+.|.++. .|....|.+ |..
T Consensus 265 GD~e~LK~~lse~vy~~f~a~I~qr~~~G~~~d~~iL--~I~~veI~~ak~~e~~~~pviiV~F~aQqI~~vRd~~tGeV 342 (378)
T TIGR00984 265 GDLEVLKSWCSEAPFSVYATVVKEYKKMGVSTKGRIL--DIRGVEIASGKLLEPGDIPVLIVTFRAQEINVTKNAKSGEV 342 (378)
T ss_pred CCHHHHHHhhCHHHHHHHHHHHHHHHHCCCeeeeEEe--eecCeEEEEEEecCCCCeEEEEEEEEEEEEEEEEcCCCCce
Confidence 5888999999999999999999999999999998865 566666432 35667776663 255455533 222
Q ss_pred CCCCCcccceEEEEEEEEc------C----CceEEec
Q 003752 765 ENCDEKISTYTTRYELSST------K----SGWRITD 791 (798)
Q Consensus 765 ~~~~Sy~~ty~vRY~L~r~------~----g~WkI~~ 791 (798)
-. .+-+.-.+|.|...++ + .+|||-+
T Consensus 343 Ve-Gd~d~I~~v~yvWtF~Rd~~~~~~~~~~~Wrl~e 378 (378)
T TIGR00984 343 VA-GDPDNIQRINYAWVFTRDVEELDNPETLGWKILE 378 (378)
T ss_pred ee-CCCCceeEEEEEEEEEEcccccCCCCCCceeecC
Confidence 11 1222335677776663 1 5899753
No 93
>TIGR03232 benzo_1_2_benB benzoate 1,2-dioxygenase, small subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family should all act on benzoate, but several have additional known activities on various benozate analogs. Some members actually may be named more suitably according to such alternate an activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=61.82 E-value=25 Score=35.19 Aligned_cols=75 Identities=13% Similarity=0.073 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCceEEe----ecceeeEEEEEecC-CCceeEEEEEEEEEEeeeccCcCCCCCCcccceEEEEEEEEcCCc
Q 003752 712 TDRASEIAQLGWTYDY----SLLNLTIDSVTLSQ-EGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSG 786 (798)
Q Consensus 712 ~~~A~~l~~~~~y~~Y----~l~~L~IdsV~~~~-~g~~A~VeA~V~E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~~g~ 786 (798)
.+|+..++...++=++ +.| -|.+|.+.. +++...|.+.+ . +|.. ..+. ...=....+|.|++.+|+
T Consensus 61 ~~RV~rL~t~~a~se~P~srtrh--~vsnv~v~~~~~~~i~v~s~f--~--v~~~-R~~~--~~~~~g~~~~~Lr~~~~~ 131 (155)
T TIGR03232 61 EDRVFRIKTERSSATVPDTRTSH--NISNVEIEEQDGDVITVRFNW--H--TLSF-RYKT--TDSYFGMSRYTIDFSGES 131 (155)
T ss_pred HHHHHHHhcCCceecCCCCeeeE--EEcCEEEEecCCCEEEEEEEE--E--EEEE-cCCC--eEEEEEEEEEEEEEcCCe
Confidence 4566666533333233 113 244455433 45666665555 1 2321 1122 111122467899998999
Q ss_pred eEEecccee
Q 003752 787 WRITDGSKI 795 (798)
Q Consensus 787 WkI~~~~Vi 795 (798)
|||..=.|+
T Consensus 132 ~ki~~r~v~ 140 (155)
T TIGR03232 132 PKIKSKYVV 140 (155)
T ss_pred eEEEEEEEE
Confidence 999976554
No 94
>PF05223 MecA_N: NTF2-like N-terminal transpeptidase domain; InterPro: IPR007887 The multiple antibiotic resistance of methicillin-resistant strains of Staphylococcus aureus (MRSA) has become a major clinical problem worldwide. Methicillin resistance in MRSA strains is due to the acquisition of the mecA gene via horizontal transfer from an unidentified species which encodes penicillin-binding protein 2a (PBP2a). The structure of the N-terminal domain from MecA is known [] Q53707 from SWISSPROT and is found to be similar to that found in NTF2 IPR002075 from INTERPRO. The length of the PBP2A N-terminal domain (which positions the transpeptidase active site more than 100A from the expected C terminus of the transmembrane anchor) suggests a possible structural role and potentially gives the transpeptidase domain substantial reach from the cell membrane. This domain seems unlikely to have an enzymatic function.; GO: 0046677 response to antibiotic; PDB: 1MWS_B 1MWT_B 1MWR_A 1MWU_A 1VQQ_A.
Probab=61.17 E-value=23 Score=33.33 Aligned_cols=100 Identities=15% Similarity=0.174 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCcccccchhhHHHHHHHHHHHHHcCceEEeecceeeEEEEEecC-CCceeEEEE
Q 003752 672 ARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQ-EGRHAWVEA 750 (798)
Q Consensus 672 ~~~Ae~lV~~Wq~aKa~AlGp~h~i~~L~eILtg~mL~~W~~~A~~l~~~~~y~~Y~l~~L~IdsV~~~~-~g~~A~VeA 750 (798)
.+.|+.-+..|..= +.+.+.+.|+.+.-+...+..-.-+-.+.|=.-...+|+|+...+.. +++.++|..
T Consensus 4 ~~~~~~f~~aw~~~---------dy~~m~~~~~~~~k~~~s~~~~~~~~~~i~~~l~~~~l~v~~~~~~~~~~~~~~~~~ 74 (118)
T PF05223_consen 4 EETAEAFLEAWEKG---------DYAAMYELTSDPSKSQYSKEDFVERYQNIYEGLGAENLKVEAEKVKKDEDDTATVPY 74 (118)
T ss_dssp -HHHHHHHHHHHTT----------HHHHHHTB-HHHHHHHHHHHHHTHHHHHHHHHT--EEEEEEEEEEECCTTEEEEEE
T ss_pred HHHHHHHHHHHHcC---------CHHHHHHhhchhhhccccHHHHHHHHHHHHhhCCccceEEEeccceecCCCceEEEE
Confidence 35677778888753 33455666777774444433322233333333455567775555444 677788877
Q ss_pred EEEEEEeeeccCcCCCCCCcccceEEEEEEEEcCCceEEe
Q 003752 751 TVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRIT 790 (798)
Q Consensus 751 ~V~E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~~g~WkI~ 790 (798)
+| +-.+-.++ . -+|.....|++.++.|||.
T Consensus 75 ~~--~~~t~~g~-~-------~~~~~~~~l~~~~~~W~V~ 104 (118)
T PF05223_consen 75 TV--TMDTPAGG-I-------WTYNYTLTLVKEDDDWKVD 104 (118)
T ss_dssp EE--EEEETTEE-E--------EEEEEEEEEEETTCEEE-
T ss_pred EE--EEEeCCCC-c-------eeeEEEEEEEecCCcEEEE
Confidence 77 43333221 1 4677888899999999974
No 95
>cd00667 ring_hydroxylating_dioxygenases_beta Ring hydroxylating dioxygenase beta subunit. This subunit has a similar structure to NTF-2, Ketosteroid isomerase and scytalone dehydratase.The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonheme iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centers to a terminal dioxygenase. Aromatic-ring-hydroxylating dioxygenases oxidize aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilize a mononuclear non-heme iron center to catalyze the addition of dioxygen to their respective substrates. The active site of these enzymes however is in the alpha sub-unit. No functional role has been attributed to the beta sub-unit except for a structural role.
Probab=57.56 E-value=47 Score=32.44 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=31.6
Q ss_pred EEEEEecC-CCceeEEEEEEEEEEeeeccCcCCCCCCcccceEEEEEEEEcCCceEEecccee
Q 003752 734 IDSVTLSQ-EGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSKI 795 (798)
Q Consensus 734 IdsV~~~~-~g~~A~VeA~V~E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~~g~WkI~~~~Vi 795 (798)
|-++.+.. +|+.|.|.+.+. ..-+..+ .. +..-.....+++++.+|+|||..=.|+
T Consensus 90 vsn~~i~~~~~d~a~~~s~~~--v~~~~~~--~~--~~~~~g~~~d~~~r~~~~wri~~R~~~ 146 (160)
T cd00667 90 VSNVRVLEGDGGEIEVRSNFV--VVRTRLD--GE--SDVFAGGRYDDLRRSEDGLRIASRRVV 146 (160)
T ss_pred EccEEEEecCCCEEEEEEEEE--EEEEcCC--Ce--EEEEEEEEEEEEEEcCCeEEEEEEEEE
Confidence 44444443 577888877652 1111111 11 222233567789998999999876553
No 96
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=56.50 E-value=28 Score=28.40 Aligned_cols=43 Identities=16% Similarity=0.124 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhCCCCccccccccccccchhhhhhHHHHHHHHHhhCChhHHHHHhc
Q 003752 372 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (798)
Q Consensus 372 I~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~le~a~C~LLLGq~~eA~~~l~ 429 (798)
..+|...|+++.... ....++.+..|.|.+-.|+.++|...+.
T Consensus 13 ~~~A~~~~~~~l~~~---------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 55 (65)
T PF13432_consen 13 YDEAIAAFEQALKQD---------------PDNPEAWYLLGRILYQQGRYDEALAYYE 55 (65)
T ss_dssp HHHHHHHHHHHHCCS---------------TTHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 578999999998754 2356999999999999999999999865
No 97
>TIGR03231 anthran_1_2_B anthranilate 1,2-dioxygenase, small subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the small subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase small subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=56.17 E-value=39 Score=33.77 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=17.5
Q ss_pred eEEEEEEEEcCCceEEecccee
Q 003752 774 YTTRYELSSTKSGWRITDGSKI 795 (798)
Q Consensus 774 y~vRY~L~r~~g~WkI~~~~Vi 795 (798)
...+|.|++.+|+|||..=.|+
T Consensus 119 g~~~~~Lrr~~~g~kI~~R~i~ 140 (155)
T TIGR03231 119 GHATYVLKPTGDSWLIRRKHSV 140 (155)
T ss_pred EEEEEEEEEeCCEEEEEEEEEE
Confidence 3567899999999999976654
No 98
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=55.76 E-value=30 Score=36.28 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=34.2
Q ss_pred eecceeeEEEEEecCCCceeEEEEEEEEEEeeec-cCcCCCCCCcccceEEEEEEEEc--CCceEEeccce
Q 003752 727 YSLLNLTIDSVTLSQEGRHAWVEATVKESARLTD-TVHPENCDEKISTYTTRYELSST--KSGWRITDGSK 794 (798)
Q Consensus 727 Y~l~~L~IdsV~~~~~g~~A~VeA~V~E~a~Ly~-~g~~~~~~Sy~~ty~vRY~L~r~--~g~WkI~~~~V 794 (798)
|+=++++|.......+++.+.|..+| .+ +|. ....|.|.|... +|+|||.|..|
T Consensus 112 y~~q~i~v~~~~~~~~~~~~~V~t~i------i~~~g~--------~~i~v~y~~~~~~~~g~WkVyDV~i 168 (211)
T PRK15117 112 YHGQTYQIAPEQPLGDATIVPIRVTI------IDPNGR--------PPVRLDFQWRKNSQTGNWQAYDMIA 168 (211)
T ss_pred hCCceEEEeecccCCCCCEEEEEEEE------EecCCC--------CCEEEEEEEEECCCCCCceEEEEEE
Confidence 44456667666544577777886655 22 221 134577888764 59999999765
No 99
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=54.75 E-value=8 Score=39.20 Aligned_cols=68 Identities=22% Similarity=0.248 Sum_probs=49.4
Q ss_pred CcccccCCCCCCC--HHHHHHHHHHHHhC-CCCCCCChHH-----HHHHHHHHHHHHHhccChhchHHHhhcccCC
Q 003752 92 DFYQALGAETHFL--GDGIRRAYEARISK-PPQYGFSPDA-----LISRRQILQAACETLANASSRREYNQGLADD 159 (798)
Q Consensus 92 DyY~ILGV~~~As--~eeIKkAYRkla~~-~PDk~~s~~a-----~~~Rf~~L~eAYevLsDp~~R~~YD~~l~~~ 159 (798)
||+...|.++.+. .+.++..|+.+... |||+..+... ..+++..++.||.+|.||-+|..|-..+..+
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g 77 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADG 77 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccc
Confidence 4555666666553 44577778887766 7997544322 3457888999999999999999998877644
No 100
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=53.37 E-value=39 Score=31.32 Aligned_cols=42 Identities=21% Similarity=0.434 Sum_probs=26.7
Q ss_pred eEEEEEecCCCceeEEEEEEEEEEeeeccCcCCCCCCcccceEEEEEEEEcCCceEEec
Q 003752 733 TIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITD 791 (798)
Q Consensus 733 ~IdsV~~~~~g~~A~VeA~V~E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~~g~WkI~~ 791 (798)
+|.+|++. |+.|.|.+.+ .++ +. .+.=-.+|.+.+|+|||.+
T Consensus 71 ~i~~i~i~--g~~A~a~v~~----~~~-~~----------~~~d~~~L~K~dg~WkIv~ 112 (116)
T PF12893_consen 71 SILSIDID--GDVASAKVEY----EFP-GF----------WFVDYFTLVKTDGGWKIVS 112 (116)
T ss_dssp EEEEEEEE--TTEEEEEEEE----EEE-TE----------EEEEEEEEEEETTEEEEEE
T ss_pred EEEEEEEE--CCEEEEEEEE----EEC-CC----------ceEEEEEEEEECCEEEEEE
Confidence 45556554 5788886665 133 11 2233478999999999975
No 101
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=51.06 E-value=11 Score=39.24 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhccChhchHH
Q 003752 100 ETHFLGDGIRRAYEARISKPPQYGFSPDALISRRQILQAACETLANASSRRE 151 (798)
Q Consensus 100 ~~~As~eeIKkAYRkla~~~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~ 151 (798)
+++|+-|||.+|+.++..+|-++ + +....|..|||.+.=...|.+
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd---~----~~~~~IEaAYD~ILM~rL~~R 45 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD---E----KSREAIEAAYDAILMERLRQR 45 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC---H----HHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999887332 1 223468899997765554443
No 102
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=47.71 E-value=2.9e+02 Score=35.95 Aligned_cols=45 Identities=9% Similarity=-0.092 Sum_probs=34.7
Q ss_pred chHHHHHHHHHHHhhCCCCccccccccccccchhhhhhHHHHHHHHHhhCChhHHHHHhc
Q 003752 370 HLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (798)
Q Consensus 370 ~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~le~a~C~LLLGq~~eA~~~l~ 429 (798)
.-..+|...|++..+.. ....+++...|.|++-.|+.++|...+.
T Consensus 283 g~~~~A~~~l~~aL~~~---------------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~ 327 (1157)
T PRK11447 283 GQGGKAIPELQQAVRAN---------------PKDSEALGALGQAYSQQGDRARAVAQFE 327 (1157)
T ss_pred CCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34568888888876532 1234889999999999999999998874
No 103
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.21 E-value=30 Score=36.44 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=34.9
Q ss_pred EeecceeeEEEEEecCCCceeEEEEEEEEEEeeeccCcCCCCCCcccceEEEEEEEEcC--CceEEeccce
Q 003752 726 DYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTK--SGWRITDGSK 794 (798)
Q Consensus 726 ~Y~l~~L~IdsV~~~~~g~~A~VeA~V~E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~~--g~WkI~~~~V 794 (798)
.|.=+.++|.....-.+++.+.|.++| .++| .++ ..+.|.+...+ |.|||.|+.+
T Consensus 113 ~Y~~q~~~v~~~~~~~~~~~v~V~~~I------i~~~-~~P-------V~l~f~~r~~~~~G~WKv~Dvi~ 169 (202)
T COG2854 113 DYKGQTLKVKPSRPLGDGTDVIVRVEI------IDPG-QKP-------VKLDFLWRKNNQTGKWKVYDVII 169 (202)
T ss_pred HccCCCceeCCCcccCCCCeEEEEEEE------ccCC-CCC-------eEEEEEEeecCCcCCeeEEEeee
Confidence 355567778777766677777775555 3432 233 23555555555 8999999865
No 104
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=45.43 E-value=36 Score=23.68 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHhhCChhHHHHHhc
Q 003752 406 EFALERGLCSLLVGKLDECRLWLG 429 (798)
Q Consensus 406 Dv~le~a~C~LLLGq~~eA~~~l~ 429 (798)
|..+..|.|...+|+.++|...++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~ 24 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQ 24 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHH
Confidence 455789999999999999999854
No 105
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=41.69 E-value=1.2e+02 Score=29.67 Aligned_cols=51 Identities=20% Similarity=0.147 Sum_probs=27.2
Q ss_pred eEEEEEecC-CCceeEEEEEEEEEEeeeccCcCCCCCCcccceEEEEEEEEc--CCceEEec
Q 003752 733 TIDSVTLSQ-EGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSST--KSGWRITD 791 (798)
Q Consensus 733 ~IdsV~~~~-~g~~A~VeA~V~E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~--~g~WkI~~ 791 (798)
+|++=.|.- ..|-|.+ +-|. ..++.+. +..+ .+...||+.+.+ +|+|||..
T Consensus 68 tI~~p~V~~lg~~~Ai~-~gvy-~f~~~d~-~G~~-----~~~~areT~v~~~~~g~W~ivh 121 (128)
T PF08332_consen 68 TILNPHVRLLGDNAAID-AGVY-TFQFVDK-DGVP-----RTVQARETRVWQKRDGKWKIVH 121 (128)
T ss_dssp EEEEEEEEEESTTEEEE-EEEE-EEEEEST-TSSE-----EEEEEEEEEEEEEETTEEEEEE
T ss_pred EecCCeEEEcCCCEEEE-eeEE-EEEeecC-CCCe-----eeEEEeEEEEEEEeCCeEEEEE
Confidence 344444332 4555666 4442 2334432 2232 345677777765 69999975
No 106
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=40.94 E-value=5.3e+02 Score=32.04 Aligned_cols=43 Identities=12% Similarity=0.168 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhCCCCccccccccccccchhhhhhHHHHHHHHHhhCChhHHHHHhc
Q 003752 372 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (798)
Q Consensus 372 I~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~le~a~C~LLLGq~~eA~~~l~ 429 (798)
..+|...|++..... ....++.+.+|.+++=+|+.++|+..+.
T Consensus 409 ~~~A~~~l~~al~l~---------------Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 409 PRAAENELKKAEVLE---------------PRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred HHHHHHHHHHHHhhC---------------CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 478888888776532 2234788999999999999999999873
No 107
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=39.71 E-value=5.2e+02 Score=30.72 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHhhCChhHHHHHh
Q 003752 406 EFALERGLCSLLVGKLDECRLWL 428 (798)
Q Consensus 406 Dv~le~a~C~LLLGq~~eA~~~l 428 (798)
++...++.+++..|+.++|...+
T Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~ 284 (899)
T TIGR02917 262 LAHYLKALVDFQKKNYEDARETL 284 (899)
T ss_pred hHHHHHHHHHHHhcCHHHHHHHH
Confidence 34455555556666666665555
No 108
>PRK10069 3-phenylpropionate dioxygenase subunit beta; Provisional
Probab=38.12 E-value=1.2e+02 Score=30.95 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=31.1
Q ss_pred EEEEEec--CCCceeEEEEEEEEEEeeeccCcCCCCCCcccceEEEEEEEEcCCceEEecccee
Q 003752 734 IDSVTLS--QEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSKI 795 (798)
Q Consensus 734 IdsV~~~--~~g~~A~VeA~V~E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~~g~WkI~~~~Vi 795 (798)
|-+|.+. .+++.|+|++.+.- +...++.. ...-..+..+.|++.+|+|||..=.|+
T Consensus 111 vsNv~V~~~~~~d~a~vrS~~~v---~~~~~~~~---~~~~~G~y~D~l~r~~~gwrI~~R~v~ 168 (183)
T PRK10069 111 ITNVRVEETDIPDEFAVRSNFLL---YRSRGERD---EDFLVGRREDVLRREGDGWRLARRRIV 168 (183)
T ss_pred EeeEEEEecCCCCEEEEEEEEEE---EEEcCCCc---eEEEEEEEEEEEEEcCCEEEEEEEEEE
Confidence 4444442 24567888887621 11111111 112233455779999999999976554
No 109
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=37.35 E-value=1.3e+02 Score=24.53 Aligned_cols=56 Identities=25% Similarity=0.379 Sum_probs=40.7
Q ss_pred HHHHhhhHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHHHH
Q 003752 179 VLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKL 245 (798)
Q Consensus 179 lLqElge~~~vl~~g~~~L~~~~~~~~~~Dv~Ls~ALA~~~larea~~~~~~~~~~a~~~Le~al~L 245 (798)
.+.+.|+++.+++.=.++++-. +...++...++++|...+ .++..|...+++++++
T Consensus 12 ~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~--------~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 12 IYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLG--------KDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTT--------THHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhC--------ccHHHHHHHHHHHHHc
Confidence 5667899999999988888742 335667777777765543 1488888888888875
No 110
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=35.44 E-value=1.8e+02 Score=25.09 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=17.3
Q ss_pred ccceEEEEEEEEcCCceEEeccce
Q 003752 771 ISTYTTRYELSSTKSGWRITDGSK 794 (798)
Q Consensus 771 ~~ty~vRY~L~r~~g~WkI~~~~V 794 (798)
.......+++++.+|+|||..-.+
T Consensus 98 ~~~~~~~~~~~~~~g~w~i~~~~~ 121 (124)
T cd00531 98 VFAGGQTFVLRPQGGGGKIANRRF 121 (124)
T ss_pred EEEEEEEEEEEEeCCEEEEEEEEE
Confidence 344466777777899999987543
No 111
>TIGR02267 Myxococcus xanthus paralogous family TIGR02267. This family consists of at least 7 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=34.12 E-value=13 Score=36.03 Aligned_cols=28 Identities=36% Similarity=0.444 Sum_probs=25.7
Q ss_pred CCChhhHHHHHHHHhhhccCCCCCCCCC
Q 003752 455 DNDLPGLCKLLETWLAEVVFPRFRDTSD 482 (798)
Q Consensus 455 ~~dLpGLC~~~e~WL~~~Vfp~FRDt~~ 482 (798)
.+|+-|-|.-.+.||.-+|.|+||+...
T Consensus 89 aGDldgARq~m~dvLAVEVVP~YR~~Ae 116 (123)
T TIGR02267 89 AGDLDGARALLLDVLAVEVVPFYRELAQ 116 (123)
T ss_pred ccChHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4899999999999999999999998764
No 112
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=33.23 E-value=5e+02 Score=26.50 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHHHHHcCceEEeecceeeEEEEEecCCCceeEEEEEEEEEEeeeccCcCCCCCCcccceEEEEEEEEcC
Q 003752 705 GQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTK 784 (798)
Q Consensus 705 g~mL~~W~~~A~~l~~~~~y~~Y~l~~L~IdsV~~~~~g~~A~VeA~V~E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~~ 784 (798)
+.+-..+.+.|+.++++|.--.|... .++++++.+++.|.-+++ +...++... +-..+|+++ +...+
T Consensus 106 ~~~k~~L~~~a~~ik~~~iSs~F~~~-----~i~~d~~~~~V~V~G~l~---t~~g~~~~~---~~~~~y~~~--~~~~~ 172 (187)
T PF05309_consen 106 GELKKQLDEEAEQIKKNNISSVFYPK-----SIEVDPETLTVFVTGTLK---TWIGDKKVS---SEDKTYRLQ--FKYRN 172 (187)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEEEe-----EEEEecCCCEEEEEEEEE---EEECCcccc---ceeEEEEEE--EEEeC
Confidence 34556666789999999999888854 566667677888877762 334333222 233454444 44557
Q ss_pred CceEEeccce
Q 003752 785 SGWRITDGSK 794 (798)
Q Consensus 785 g~WkI~~~~V 794 (798)
|.=+|.+..-
T Consensus 173 g~~~L~~f~e 182 (187)
T PF05309_consen 173 GRLWLKSFKE 182 (187)
T ss_pred CEEEEeeeEe
Confidence 7777666543
No 113
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=31.73 E-value=1e+03 Score=29.05 Aligned_cols=60 Identities=12% Similarity=0.101 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhCCCCccccccccccccchhhhhhHHHHHHHHHhhCChhHHHHHhc
Q 003752 352 AYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (798)
Q Consensus 352 ~YlaalAliA~GF~~rkP~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~le~a~C~LLLGq~~eA~~~l~ 429 (798)
.|.-+.++...| +..+-+.+|..+|++..... ....++....|...+-.|+.++|...++
T Consensus 249 ~~~Lg~~l~~~G---~~~eA~~~A~~~~~~Al~l~---------------P~~~~a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 249 RRSLGLAYYQSG---RSREAKLQAAEHWRHALQFN---------------SDNVRIVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred HHHHHHHHHHcC---CchhhHHHHHHHHHHHHhhC---------------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 334444444443 22333456777887776532 1234677888888888999999988874
No 114
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=29.78 E-value=7.8e+02 Score=31.12 Aligned_cols=131 Identities=21% Similarity=0.117 Sum_probs=78.2
Q ss_pred chhHHHHHHhhhHHHHHHHHHHHhhhcC--CCChhhHHHHHHHHHhhHhhHHHHHcCCC--chhhHhHHHHHHHHHHHHh
Q 003752 174 PGALLVLQEAGETEVVLRIGESLLRERL--PKSFKQDVVLAMALAYVDISRDAMAFNPP--DYIGGCEMLERALKLLQEE 249 (798)
Q Consensus 174 ~GaL~lLqElge~~~vl~~g~~~L~~~~--~~~~~~Dv~Ls~ALA~~~larea~~~~~~--~~~~a~~~Le~al~LL~~~ 249 (798)
.++=.....++-+++.++++.+++.... ...+.+=.-+..+++|--.++++=-.+.+ .-.++-..||+|+++=--.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3344455688889999999999997432 22334445677788886666554222111 1223344455544320000
Q ss_pred CC----CCCChHHHHHHHHHhHhhChhhH---------HHhhCCCCChhhHHHHHHHHHHHHHHHHHhCC
Q 003752 250 GA----SSLAPDLQAQIDETLEEINPRCV---------LELLGLPLSGEYQARREEGLHGMLNILWAVGG 306 (798)
Q Consensus 250 g~----~~L~p~lq~eI~~~L~~L~P~~i---------LELLalPl~~e~~~~Rq~Gl~lLr~lL~~rg~ 306 (798)
.. -++.-.+|++|+.++...+-+-- +-||++=++. ..+-+.|+.++.+.|.+-|.
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa--~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSA--QKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHhhh
Confidence 00 01335788999999886654332 2567777765 44788999999999988764
No 115
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=29.71 E-value=5.7e+02 Score=26.12 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=52.7
Q ss_pred HHhhhHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHHHHHHHhCCCCCChHHH
Q 003752 181 QEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEEGASSLAPDLQ 259 (798)
Q Consensus 181 qElge~~~vl~~g~~~L~~~~~~~~~~Dv~Ls~ALA~~~larea~~~~~~~~~~a~~~Le~al~LL~~~g~~~L~p~lq 259 (798)
...|++..++...+..++.....+...++..-+++++....+..+ ...++....-..+..-..++.+...+...++.+
T Consensus 53 y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~-~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~ 130 (203)
T PF13525_consen 53 YKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGIL-RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAK 130 (203)
T ss_dssp HHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH--TT---HHHHHHHHHHHHHHHH-TTSTTHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccch-hcccChHHHHHHHHHHHHHHHHCcCchHHHHHH
Confidence 466889999999999998877778889999999999988876664 223556666666777777777766544444433
No 116
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=29.53 E-value=49 Score=24.08 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCC
Q 003752 671 DARLAEDIVRKWQNIKSQAFGPDH 694 (798)
Q Consensus 671 t~~~Ae~lV~~Wq~aKa~AlGp~h 694 (798)
.-++|+.+.++=+.+..+.||++|
T Consensus 17 ~~~~A~~~~~~al~~~~~~~G~~H 40 (42)
T PF13374_consen 17 RYEEALELLEEALEIRERLLGPDH 40 (42)
T ss_dssp -HHHHHHHHHHHHHHH--------
T ss_pred hcchhhHHHHHHHHHHHHHhcccc
Confidence 356799999999999999999998
No 117
>PF12642 TpcC: Conjugative transposon protein TcpC; InterPro: IPR024735 This family of bacterial proteins are annotated as conjugative transposon protein TcpC. The transfer clostridial plasmid (tcp) locus is part of some conjugative antibiotic resistance and virulence plasmids. TcpC was one of five genes whose products had low-level sequence identity to Tn916 proteins, having similarity to ORF13 homologues from Tn916, Tn5397, and CW459tet [].; PDB: 3UB1_A.
Probab=29.09 E-value=90 Score=32.48 Aligned_cols=54 Identities=22% Similarity=0.436 Sum_probs=26.7
Q ss_pred cCceEEeecceeeEEEEEecC--CCceeEEE-EEEEEEEeeeccCcCCCCCCcccceEEEE--EEEEcCCceEEec
Q 003752 721 LGWTYDYSLLNLTIDSVTLSQ--EGRHAWVE-ATVKESARLTDTVHPENCDEKISTYTTRY--ELSSTKSGWRITD 791 (798)
Q Consensus 721 ~~~y~~Y~l~~L~IdsV~~~~--~g~~A~Ve-A~V~E~a~Ly~~g~~~~~~Sy~~ty~vRY--~L~r~~g~WkI~~ 791 (798)
+|.+|+|. +|+++.+.. ++..+.|. +++... + ...+.+-.| +|+..+|+|.|.+
T Consensus 174 ~~~~~~~~----~v~~~~~~~~~~~~~~~v~tVt~~~~------~-------t~~~~~~~y~LtL~~~~~~w~V~~ 232 (232)
T PF12642_consen 174 NGAPYKFV----KVDDIKVYKTKDKGRVVVQTVTFKDP------G-------TKATLTQQYTLTLTKRGGRWYVTK 232 (232)
T ss_dssp ----SEEE----EEEEEEEEEEETTEEEEE--EEEEEE------E-------TTEEEEEEEEEEEEEETTEEEEE-
T ss_pred CCCceEEE----eeeeEEeecCCCCcEEEEEEEEEEEC------C-------CCcEEEEEEEEEEEEcCCEEEEeC
Confidence 45555554 888888777 34444443 333222 2 113344444 4455679999864
No 118
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=28.10 E-value=1.9e+02 Score=27.87 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=37.5
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHH
Q 003752 178 LVLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERAL 243 (798)
Q Consensus 178 ~lLqElge~~~vl~~g~~~L~~~~~~~~~~Dv~Ls~ALA~~~larea~~~~~~~~~~a~~~Le~al 243 (798)
+.+..+|+.++++.+-++.|...+....+....+-.|-++..++ +++.|..+|++++
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG---------~~deA~~~L~~~~ 65 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG---------RYDEALALLEEAL 65 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHH
Confidence 34566788888888888888766666666666665555554433 3666777776654
No 119
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=27.67 E-value=3.6e+02 Score=29.35 Aligned_cols=97 Identities=14% Similarity=0.240 Sum_probs=56.7
Q ss_pred CCcccccCC-CCCCCHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhccChh-chHHHhhcccCCCCCCCcccC
Q 003752 91 IDFYQALGA-ETHFLGDGIRRAYEARISKPPQYGFSPDALISRRQILQAACETLANAS-SRREYNQGLADDHADTILTEV 168 (798)
Q Consensus 91 lDyY~ILGV-~~~As~eeIKkAYRkla~~~PDk~~s~~a~~~Rf~~L~eAYevLsDp~-~R~~YD~~l~~~~~~~~~lei 168 (798)
.+|+..+++ -..-.-++=..+|++.+..||+..+.+.+. -.+.++|-.++|.+ ....|...+... +..
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~----y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~s----- 213 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNAN----YWLGQLNYNKGKKDDAAYYFASVVKNY-PKS----- 213 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCC-----
Confidence 456666664 333445565667888888899887665542 26778887877744 333444444322 111
Q ss_pred CCCccchhHH----HHHHhhhHHHHHHHHHHHhhh
Q 003752 169 PWDKVPGALL----VLQEAGETEVVLRIGESLLRE 199 (798)
Q Consensus 169 ~~~~~~GaL~----lLqElge~~~vl~~g~~~L~~ 199 (798)
.+.+.++. ++.++|+++.+.++-+.+++.
T Consensus 214 --~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 214 --PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred --cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 12233332 345778888877777777654
No 120
>PF09543 DUF2379: Protein of unknown function (DUF2379); InterPro: IPR011753 This family consists of at least 7 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=27.41 E-value=20 Score=34.75 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=25.8
Q ss_pred CCChhhHHHHHHHHhhhccCCCCCCCCC
Q 003752 455 DNDLPGLCKLLETWLAEVVFPRFRDTSD 482 (798)
Q Consensus 455 ~~dLpGLC~~~e~WL~~~Vfp~FRDt~~ 482 (798)
.+|+-|-|.-.+.||.-+|.|+||++..
T Consensus 87 aGD~dgARq~m~dvLAVEvVP~YR~~Ae 114 (121)
T PF09543_consen 87 AGDLDGARQEMRDVLAVEVVPHYREIAE 114 (121)
T ss_pred ccCHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 4889999999999999999999999764
No 121
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=27.16 E-value=2.8e+02 Score=22.32 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=37.2
Q ss_pred HHHHhhhHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHHHH
Q 003752 179 VLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKL 245 (798)
Q Consensus 179 lLqElge~~~vl~~g~~~L~~~~~~~~~~Dv~Ls~ALA~~~larea~~~~~~~~~~a~~~Le~al~L 245 (798)
.+.+.|+++.+++.-+.+|+.. +...++.+..+ +-.+.++ ++..|...+++++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~---P~~~~a~~~lg-------~~~~~~g--~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD---PDNPEAWYLLG-------RILYQQG--RYDEALAYYERALEL 60 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS---TTHHHHHHHHH-------HHHHHTT---HHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHH-------HHHHHcC--CHHHHHHHHHHHHHH
Confidence 5678999999999999999743 33444444333 3334454 488888888888753
No 122
>PF12707 DUF3804: Protein of unknown function (DUF3804); InterPro: IPR024525 Structural alignments indicate that this family of functionally uncharacterised proteins carry an NTF2-fold with a hydrophobic cavity. Family members also contain two highly conserved tryptophan residues toward their C-terminal ends.; PDB: 3HZP_A.
Probab=26.26 E-value=2.8e+02 Score=27.23 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=32.4
Q ss_pred eeEEEEEecCCCceeEEEEEEEEEEeeeccCcCCCCCCcccceEEEEEEEEcCCceEEecc
Q 003752 732 LTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDG 792 (798)
Q Consensus 732 L~IdsV~~~~~g~~A~VeA~V~E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~~g~WkI~~~ 792 (798)
++|..+++.. ++.|.---++.|.-++. |.+.+ +-.++.-.+++.+|.|||.=|
T Consensus 63 ~kIhrlE~l~-~~~a~~~ftl~~~FsYK--G~~Nd-----Dl~~~T~IFKKvdg~Wk~~Wm 115 (128)
T PF12707_consen 63 IKIHRLEFLS-DDWAMCAFTLGEKFSYK--GTPND-----DLSTYTSIFKKVDGVWKISWM 115 (128)
T ss_dssp EEEEEEEESS-SSEEEEEEEEEEEEEET--TEEEE-----EB-EEEEEEEEETTEEEEEEE
T ss_pred eeeeeEEecC-CCeEEEEEEecceeEec--CCcCC-----chhHHHHHHhhcCCeEEEEEE
Confidence 4677777654 46777667887774443 43322 333444556667899999744
No 123
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=25.85 E-value=84 Score=21.88 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhCChhHHHHHhc
Q 003752 408 ALERGLCSLLVGKLDECRLWLG 429 (798)
Q Consensus 408 ~le~a~C~LLLGq~~eA~~~l~ 429 (798)
++..|-.++..|+.++|+.+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4678889999999999999875
No 124
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=25.68 E-value=1.3e+02 Score=24.77 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=23.2
Q ss_pred hhhhHHHHHHHHHhhCChhHHHHHhc
Q 003752 404 EMEFALERGLCSLLVGKLDECRLWLG 429 (798)
Q Consensus 404 ~~Dv~le~a~C~LLLGq~~eA~~~l~ 429 (798)
...+++.+|.|..-+|+.++|...|.
T Consensus 28 ~~~~~~~~a~~~~~~g~~~~A~~~l~ 53 (73)
T PF13371_consen 28 DPELWLQRARCLFQLGRYEEALEDLE 53 (73)
T ss_pred cchhhHHHHHHHHHhccHHHHHHHHH
Confidence 44788999999999999999999975
No 125
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=24.60 E-value=1.2e+03 Score=27.60 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhCCCCccccccccccccchhhhhhHHHHHHHHHhhCChhHHHHHhcc
Q 003752 372 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGL 430 (798)
Q Consensus 372 I~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~le~a~C~LLLGq~~eA~~~l~l 430 (798)
..+|...+++..+.. ....+..+..+.|..-+|+.++|...+..
T Consensus 277 ~~~A~~~~~~~l~~~---------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 320 (899)
T TIGR02917 277 YEDARETLQDALKSA---------------PEYLPALLLAGASEYQLGNLEQAYQYLNQ 320 (899)
T ss_pred HHHHHHHHHHHHHhC---------------CCchhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 567777777765432 11236677889999999999999999854
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=23.78 E-value=1.2e+02 Score=29.36 Aligned_cols=49 Identities=10% Similarity=-0.032 Sum_probs=37.3
Q ss_pred CCCchHHHHHHHHHHHhhCCCCccccccccccccchhhhhhHHHHHHHHHhhCChhHHHHHhcc
Q 003752 367 KQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGL 430 (798)
Q Consensus 367 rkP~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~le~a~C~LLLGq~~eA~~~l~l 430 (798)
.+=....+|...|+++.... ....+++..+|.|...+|+.++|...++.
T Consensus 35 ~~~g~~~~A~~~~~~al~~~---------------P~~~~a~~~lg~~~~~~g~~~~A~~~y~~ 83 (144)
T PRK15359 35 WQEGDYSRAVIDFSWLVMAQ---------------PWSWRAHIALAGTWMMLKEYTTAINFYGH 83 (144)
T ss_pred HHcCCHHHHHHHHHHHHHcC---------------CCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33445678888888887643 22448899999999999999999998753
No 127
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=23.29 E-value=1.5e+02 Score=20.64 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=22.0
Q ss_pred HHhhHhhHHHHHcCCCchhhHhHHHHHHHHH
Q 003752 215 LAYVDISRDAMAFNPPDYIGGCEMLERALKL 245 (798)
Q Consensus 215 LA~~~larea~~~~~~~~~~a~~~Le~al~L 245 (798)
-++..+|.-.+..+ +|.+|.+.+++++++
T Consensus 2 ~~~~~lg~~~~~~~--~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLG--NYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 35666777777775 599999999999876
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.17 E-value=1.9e+02 Score=32.14 Aligned_cols=44 Identities=23% Similarity=0.347 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhh-CCCCccccccccccccchhhhhhHHHHHHHHHhhCChhHHHHHhccC
Q 003752 372 IADADNMFKHLQQ-NKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLD 431 (798)
Q Consensus 372 I~~A~~~l~~L~~-~~~~~~~~~~~~~~~~~~~~~Dv~le~a~C~LLLGq~~eA~~~l~l~ 431 (798)
|++|--+++.+.. .. .-.++-..+|||++.+|+.+||+..|+..
T Consensus 189 ~qdAfyifeE~s~k~~----------------~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTP----------------PTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred hhhHHHHHHHHhcccC----------------CChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999985 22 12356677999999999999999998533
No 129
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=23.06 E-value=2.1e+02 Score=32.12 Aligned_cols=57 Identities=11% Similarity=-0.016 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhCCCCccccccccccccchhhhhhHHHHHHHHHhhCChhHHHHHhcc
Q 003752 352 AYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGL 430 (798)
Q Consensus 352 ~YlaalAliA~GF~~rkP~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~le~a~C~LLLGq~~eA~~~l~l 430 (798)
.|.-+.+|+..| -..+|...++++.... ......++-+|+|++-+|+.++|...+..
T Consensus 39 ~~~~a~~~~~~g-------~~~eAl~~~~~Al~l~---------------P~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 39 YADRAQANIKLG-------NFTEAVADANKAIELD---------------PSLAKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred HHHHHHHHHHcC-------CHHHHHHHHHHHHHhC---------------cCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455566666553 4567777777776432 12346789999999999999999999853
No 130
>PF15655 Imm-NTF2: NTF2 fold immunity protein
Probab=22.94 E-value=66 Score=31.34 Aligned_cols=17 Identities=24% Similarity=0.599 Sum_probs=15.7
Q ss_pred EEEEEEEEcCCceEEec
Q 003752 775 TTRYELSSTKSGWRITD 791 (798)
Q Consensus 775 ~vRY~L~r~~g~WkI~~ 791 (798)
..||.|++.+|.|+|..
T Consensus 101 ~~~f~l~~~~g~W~ID~ 117 (130)
T PF15655_consen 101 KYRFILKRKDGKWKIDK 117 (130)
T ss_pred ceEEEEEEECCEEeEeh
Confidence 48999999999999987
No 131
>TIGR02761 TraE_TIGR type IV conjugative transfer system protein TraE. TraE is a component of type IV secretion systems involved in conjugative transfer of plasmid DNA. The function of the TraE protein is unknown.
Probab=22.33 E-value=8.5e+02 Score=24.94 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHcCceEEeecceeeEEEEEecCCCceeEEEEEEEEEEeeeccCcCCCCCCcccceEEEEEEEEcCC
Q 003752 706 QMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKS 785 (798)
Q Consensus 706 ~mL~~W~~~A~~l~~~~~y~~Y~l~~L~IdsV~~~~~g~~A~VeA~V~E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~~g 785 (798)
.+-..+...|+.++++|.--.|.. ..++++++.+.+.|.-+++ ++..+.... +-..+|.+.|.. .+|
T Consensus 107 ~~k~~L~~~a~~ik~~~vSs~F~~-----~~i~v~~~~~~V~V~G~l~---~~vg~~~~~---~~~k~y~~~~~~--~~g 173 (181)
T TIGR02761 107 QIKSRLAKEAEEIKKANASSVFYP-----KSVEWNPQEGTVKVRGHLK---RFVGGRLLS---DERKTYLLRFSY--SGG 173 (181)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEe-----eeEEEccCCCEEEEEEEEE---EEECCeecc---ccceEEEEEEEE--cCC
Confidence 355556677999999999988874 4666677777889988873 344322222 334555555444 466
Q ss_pred ceEEe
Q 003752 786 GWRIT 790 (798)
Q Consensus 786 ~WkI~ 790 (798)
.=+|.
T Consensus 174 ~~~L~ 178 (181)
T TIGR02761 174 RLVLD 178 (181)
T ss_pred EEEEe
Confidence 55544
No 132
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=21.86 E-value=1.1e+02 Score=21.71 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhhCChhHHHHHhc
Q 003752 405 MEFALERGLCSLLVGKLDECRLWLG 429 (798)
Q Consensus 405 ~Dv~le~a~C~LLLGq~~eA~~~l~ 429 (798)
.++...+|.|++.+|+.++|...+.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~ 25 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQ 25 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHH
No 133
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=21.42 E-value=3.4e+02 Score=23.75 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=40.6
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHHHH
Q 003752 178 LVLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKL 245 (798)
Q Consensus 178 ~lLqElge~~~vl~~g~~~L~~~~~~~~~~Dv~Ls~ALA~~~larea~~~~~~~~~~a~~~Le~al~L 245 (798)
.++.+.|+++.++++-+.++..........++.+.++.++.. . .++..|...++++++.
T Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-------~--~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 47 EAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE-------L--GDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH-------h--CChHHHHHHHHHHHHH
Confidence 357789999999999999987544444556777777766532 2 2477777777766654
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=21.21 E-value=3.7e+02 Score=24.59 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhCCCCccccccccccccchhhhhhHHHHHHHHHhhCChhHHHHHhc
Q 003752 372 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (798)
Q Consensus 372 I~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~le~a~C~LLLGq~~eA~~~l~ 429 (798)
..+|..++++..... ....+++...|.|+..+|+.++|..++.
T Consensus 67 ~~~A~~~~~~~~~~~---------------p~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (135)
T TIGR02552 67 YEEAIDAYALAAALD---------------PDDPRPYFHAAECLLALGEPESALKALD 109 (135)
T ss_pred HHHHHHHHHHHHhcC---------------CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 467888888776533 2245899999999999999999999874
No 135
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=21.17 E-value=1.7e+02 Score=23.85 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=35.8
Q ss_pred CchHHHHHHHHHHHhhCCCCccccccccccccchhhhhhHHHHHHHHHhhC-ChhHHHHHhc
Q 003752 369 PHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVG-KLDECRLWLG 429 (798)
Q Consensus 369 P~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~le~a~C~LLLG-q~~eA~~~l~ 429 (798)
=.-..+|...|.+..+.. ....+++..+|.|+.-+| +.++|...+.
T Consensus 16 ~~~~~~A~~~~~~ai~~~---------------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELD---------------PNNAEAYYNLGLAYMKLGKDYEEAIEDFE 62 (69)
T ss_dssp TTHHHHHHHHHHHHHHHS---------------TTHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC---------------CCCHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 345678888888877643 235589999999999999 7999988764
No 136
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=21.10 E-value=1.9e+03 Score=28.63 Aligned_cols=57 Identities=12% Similarity=0.168 Sum_probs=41.6
Q ss_pred HHHHhhhccCCCchHHHHHHHHHHHhhCCCCccccccccccccchhhhhhHHHHHHHHHhhCChhHHHHHhc
Q 003752 358 ALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (798)
Q Consensus 358 AliA~GF~~rkP~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~le~a~C~LLLGq~~eA~~~l~ 429 (798)
.++..|....+-.-..+|...|++..+.. ....+.++..|.|++-.|+.++|...+.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~---------------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~ 409 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD---------------NTDSYAVLGLGDVAMARKDYAAAERYYQ 409 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33444554444456788999999887642 1234678889999999999999999884
No 137
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=21.07 E-value=6.4e+02 Score=24.51 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=55.4
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHHHHHHHhCCCCCChH
Q 003752 178 LVLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEEGASSLAPD 257 (798)
Q Consensus 178 ~lLqElge~~~vl~~g~~~L~~~~~~~~~~Dv~Ls~ALA~~~larea~~~~~~~~~~a~~~Le~al~LL~~~g~~~L~p~ 257 (798)
.++...|.++++++.-+.+|.-. +...+....++..+..+++.....+ ++..|-..+++|++..++.- .+.|+
T Consensus 80 ~~~~~~g~~~eA~~~~~~Al~~~---~~~~~~~~~la~i~~~~~~~~~~~g--~~~~A~~~~~~a~~~~~~a~--~~~p~ 152 (168)
T CHL00033 80 LIHTSNGEHTKALEYYFQALERN---PFLPQALNNMAVICHYRGEQAIEQG--DSEIAEAWFDQAAEYWKQAI--ALAPG 152 (168)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHhhHHHHHcc--cHHHHHHHHHHHHHHHHHHH--HhCcc
Confidence 46678899999999999998642 2224556677778888888776665 58888888999988877652 24554
Q ss_pred HHHHHH
Q 003752 258 LQAQID 263 (798)
Q Consensus 258 lq~eI~ 263 (798)
--..+.
T Consensus 153 ~~~~~~ 158 (168)
T CHL00033 153 NYIEAQ 158 (168)
T ss_pred cHHHHH
Confidence 333333
No 138
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=21.05 E-value=1.5e+02 Score=28.63 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHHhhCCCCccccccccccccchhhhhhHHHHHHHHHhhCChhHHHHHhc
Q 003752 370 HLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (798)
Q Consensus 370 ~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~le~a~C~LLLGq~~eA~~~l~ 429 (798)
.-..+|...+++..... ....+.++-.|+|.+-+|+.++|...+.
T Consensus 72 g~~~~A~~~y~~Al~l~---------------p~~~~a~~~lg~~l~~~g~~~eAi~~~~ 116 (144)
T PRK15359 72 KEYTTAINFYGHALMLD---------------ASHPEPVYQTGVCLKMMGEPGLAREAFQ 116 (144)
T ss_pred hhHHHHHHHHHHHHhcC---------------CCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35667888888877532 2234899999999999999999999875
No 139
>PF06287 DUF1039: Protein of unknown function (DUF1039); InterPro: IPR010437 This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic Escherichia coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterised as part of the apparatus or as an effector protein.
Probab=20.87 E-value=2.2e+02 Score=25.18 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHHhhCCCCccccccccccccchhhhhhHHHHHHHHHhhCChhHHHHHhccC
Q 003752 370 HLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLD 431 (798)
Q Consensus 370 ~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~le~a~C~LLLGq~~eA~~~l~l~ 431 (798)
-+..+|+.|+..|.+---| .-|-.+=+++|.+=||+.++|.+.|.-.
T Consensus 7 gL~~ea~aIL~alP~Li~D---------------~~~r~~c~alllfGL~~~~~Al~~L~~~ 53 (66)
T PF06287_consen 7 GLLKEARAILNALPQLIPD---------------EEDRAVCEALLLFGLGEQAAALQLLADS 53 (66)
T ss_pred ccHHHHHHHHHhchhhcCC---------------HhHHHHHHHHHHHHcCChHHHHHHHhCC
Confidence 3678999999999864322 2277788899999999999999998743
No 140
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=20.35 E-value=1.5e+03 Score=27.04 Aligned_cols=213 Identities=10% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHHHH------------
Q 003752 178 LVLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKL------------ 245 (798)
Q Consensus 178 ~lLqElge~~~vl~~g~~~L~~~~~~~~~~Dv~Ls~ALA~~~larea~~~~~~~~~~a~~~Le~al~L------------ 245 (798)
.++...|+++++++.-+.+|+-... .+-+++.++...+..+. |..|...+++++++
T Consensus 339 ~~~~~~g~~~eA~~~~~kal~l~P~----------~~~~~~~la~~~~~~g~--~~eA~~~~~~al~~~p~~~~~~~~lg 406 (615)
T TIGR00990 339 TFKCLKGKHLEALADLSKSIELDPR----------VTQSYIKRASMNLELGD--PDKAEEDFDKALKLNSEDPDIYYHRA 406 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC----------cHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHH
Q ss_pred --HHHhCCCCCChHHHHHHHHHhHhhChhhHHHhhCCCCChhhHHHHHHHHHHHHHHHHHhCCCCCCccCCCCChHHHHH
Q 003752 246 --LQEEGASSLAPDLQAQIDETLEEINPRCVLELLGLPLSGEYQARREEGLHGMLNILWAVGGGGATAIAGGFTRESFMN 323 (798)
Q Consensus 246 --L~~~g~~~L~p~lq~eI~~~L~~L~P~~iLELLalPl~~e~~~~Rq~Gl~lLr~lL~~rg~~g~~~~~~gl~~~dFl~ 323 (798)
+...|. +.+-...++..| ++.|..+.-++.+=..-....+-.+++..++..+......... -.++.
T Consensus 407 ~~~~~~g~---~~~A~~~~~kal-~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~--------~~~lg 474 (615)
T TIGR00990 407 QLHFIKGE---FAQAGKDYQKSI-DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDV--------YNYYG 474 (615)
T ss_pred HHHHHcCC---HHHHHHHHHHHH-HcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH--------HHHHH
Q ss_pred HHHhhccHHHH-HHhhhcCCCCCCchhHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhCCCCccccccccccccch
Q 003752 324 EAFLRMTSAEQ-VKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEK 402 (798)
Q Consensus 324 q~~~~LTa~EQ-v~LF~~~~~~~~~~~~~~YlaalAliA~GF~~rkP~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~ 402 (798)
.+...+=--++ ++.|...-...+-.....+.......-.+..-.+..-..+|..+|++.....-+..
T Consensus 475 ~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~------------ 542 (615)
T TIGR00990 475 ELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD------------ 542 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH------------
Q ss_pred hhhhhHHHHHHHHHhhCChhHHHHHhc
Q 003752 403 HEMEFALERGLCSLLVGKLDECRLWLG 429 (798)
Q Consensus 403 ~~~Dv~le~a~C~LLLGq~~eA~~~l~ 429 (798)
......|-|.+-+|+.++|...++
T Consensus 543 ---~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 543 ---IAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred ---HHHHHHHHHHHHccCHHHHHHHHH
Done!