Query 003753
Match_columns 798
No_of_seqs 705 out of 4130
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 11:27:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.3E-95 3E-100 840.0 44.9 769 7-792 4-851 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.6E-62 1E-66 594.4 48.5 616 130-789 184-912 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 6.5E-45 1.4E-49 381.7 17.7 279 135-416 1-285 (287)
4 KOG0444 Cytoskeletal regulator 99.9 7.5E-24 1.6E-28 221.3 -2.3 295 473-787 35-379 (1255)
5 KOG0444 Cytoskeletal regulator 99.8 2.8E-22 6.2E-27 209.6 -1.5 262 488-777 99-393 (1255)
6 PLN00113 leucine-rich repeat r 99.8 2.3E-19 5.1E-24 220.1 13.7 239 514-780 138-390 (968)
7 PLN00113 leucine-rich repeat r 99.8 4.3E-19 9.3E-24 217.8 15.7 268 490-787 91-373 (968)
8 KOG4194 Membrane glycoprotein 99.8 2.1E-20 4.5E-25 194.8 -0.4 264 491-780 148-426 (873)
9 KOG4194 Membrane glycoprotein 99.8 1.3E-19 2.9E-24 188.8 5.2 281 490-788 100-409 (873)
10 KOG0472 Leucine-rich repeat pr 99.8 5.5E-20 1.2E-24 183.7 0.5 287 487-781 201-539 (565)
11 PLN03210 Resistant to P. syrin 99.7 1.3E-17 2.7E-22 204.9 17.4 281 483-784 602-944 (1153)
12 KOG0472 Leucine-rich repeat pr 99.7 3.3E-19 7.1E-24 178.2 -8.5 116 504-623 56-171 (565)
13 PRK15387 E3 ubiquitin-protein 99.6 1.8E-15 3.8E-20 172.5 14.0 242 478-781 209-456 (788)
14 KOG0617 Ras suppressor protein 99.6 7.6E-18 1.6E-22 149.2 -5.2 161 483-661 24-186 (264)
15 PRK15370 E3 ubiquitin-protein 99.6 7.6E-15 1.7E-19 168.5 11.8 224 492-781 199-426 (754)
16 KOG0617 Ras suppressor protein 99.6 1.8E-16 3.8E-21 140.6 -3.1 167 504-706 22-189 (264)
17 PRK15370 E3 ubiquitin-protein 99.5 9.2E-15 2E-19 167.9 8.9 228 493-789 179-406 (754)
18 KOG0618 Serine/threonine phosp 99.5 1.4E-15 2.9E-20 167.8 0.8 167 493-664 220-399 (1081)
19 PRK15387 E3 ubiquitin-protein 99.5 4.8E-14 1E-18 160.8 12.0 234 493-790 202-441 (788)
20 KOG0618 Serine/threonine phosp 99.5 5.3E-15 1.2E-19 163.2 1.0 267 493-788 46-327 (1081)
21 KOG4237 Extracellular matrix p 99.5 3E-15 6.5E-20 150.0 -1.3 83 686-780 271-356 (498)
22 PRK04841 transcriptional regul 99.4 2.5E-11 5.4E-16 148.6 24.0 293 131-466 15-333 (903)
23 KOG4237 Extracellular matrix p 99.3 2.4E-13 5.1E-18 136.6 0.0 148 473-623 49-199 (498)
24 KOG4658 Apoptotic ATPase [Sign 99.3 3.7E-12 8.1E-17 148.8 8.8 258 505-785 513-785 (889)
25 PRK00411 cdc6 cell division co 99.3 1.9E-09 4.1E-14 118.3 28.2 292 131-443 31-359 (394)
26 TIGR03015 pepcterm_ATPase puta 99.2 1.6E-09 3.4E-14 112.3 23.7 178 149-336 41-242 (269)
27 TIGR02928 orc1/cdc6 family rep 99.2 1.4E-08 3.1E-13 110.2 29.5 291 131-443 16-351 (365)
28 cd00116 LRR_RI Leucine-rich re 99.2 8.8E-12 1.9E-16 133.0 3.2 254 492-780 23-317 (319)
29 cd00116 LRR_RI Leucine-rich re 99.2 1.3E-11 2.9E-16 131.6 3.6 236 512-780 19-288 (319)
30 PF01637 Arch_ATPase: Archaeal 99.2 2.7E-10 5.9E-15 115.4 12.6 195 132-331 1-233 (234)
31 KOG0532 Leucine-rich repeat (L 99.1 2.8E-12 6E-17 134.8 -2.8 191 493-722 76-270 (722)
32 PF14580 LRR_9: Leucine-rich r 99.1 6.2E-11 1.3E-15 111.2 4.1 137 504-655 8-147 (175)
33 PF14580 LRR_9: Leucine-rich r 99.1 8.8E-11 1.9E-15 110.2 3.9 120 526-662 7-127 (175)
34 KOG0532 Leucine-rich repeat (L 99.0 1.3E-11 2.7E-16 130.0 -3.0 189 497-724 55-246 (722)
35 TIGR00635 ruvB Holliday juncti 99.0 2.6E-08 5.6E-13 105.2 20.7 275 131-443 5-290 (305)
36 PF05729 NACHT: NACHT domain 99.0 4.1E-09 9E-14 100.4 11.9 139 152-301 1-164 (166)
37 COG2909 MalT ATP-dependent tra 99.0 1.7E-08 3.6E-13 112.5 17.8 294 131-467 20-340 (894)
38 PRK00080 ruvB Holliday junctio 99.0 8.1E-08 1.8E-12 102.1 22.4 276 130-443 25-311 (328)
39 COG4886 Leucine-rich repeat (L 99.0 4.2E-10 9.1E-15 123.7 5.1 178 511-724 111-289 (394)
40 KOG3207 Beta-tubulin folding c 99.0 1.2E-10 2.6E-15 119.1 0.5 107 513-622 118-232 (505)
41 KOG1259 Nischarin, modulator o 98.9 3.4E-10 7.3E-15 110.0 1.3 128 586-757 283-410 (490)
42 KOG3207 Beta-tubulin folding c 98.9 6.6E-10 1.4E-14 113.8 1.8 208 489-722 118-336 (505)
43 PRK06893 DNA replication initi 98.8 3.4E-08 7.4E-13 98.9 13.1 150 150-334 38-205 (229)
44 PTZ00112 origin recognition co 98.8 1.5E-06 3.2E-11 98.0 25.7 203 130-336 755-986 (1164)
45 KOG1259 Nischarin, modulator o 98.8 7.3E-10 1.6E-14 107.7 -0.1 131 489-625 281-412 (490)
46 COG2256 MGS1 ATPase related to 98.7 3.6E-07 7.9E-12 93.7 16.2 221 131-380 25-266 (436)
47 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.8E-07 4E-12 94.1 13.8 169 131-334 16-203 (226)
48 KOG2120 SCF ubiquitin ligase, 98.7 6.6E-10 1.4E-14 108.1 -4.0 84 540-624 185-272 (419)
49 COG4886 Leucine-rich repeat (L 98.7 1.2E-08 2.5E-13 112.3 4.9 176 492-705 116-292 (394)
50 COG3899 Predicted ATPase [Gene 98.7 5.5E-07 1.2E-11 106.4 18.5 308 132-462 2-383 (849)
51 PRK13342 recombination factor 98.7 7.1E-07 1.5E-11 97.8 18.3 176 131-335 13-199 (413)
52 PF13855 LRR_8: Leucine rich r 98.7 2E-08 4.2E-13 77.4 3.5 60 516-576 1-61 (61)
53 KOG0531 Protein phosphatase 1, 98.6 5.8E-09 1.3E-13 114.7 -0.4 126 493-625 73-199 (414)
54 PRK04195 replication factor C 98.5 6.8E-06 1.5E-10 92.0 21.5 241 130-416 14-272 (482)
55 PRK08727 hypothetical protein; 98.5 1.6E-06 3.4E-11 87.1 14.5 164 131-329 20-201 (233)
56 COG1474 CDC6 Cdc6-related prot 98.5 9.9E-06 2.1E-10 86.1 20.1 196 131-332 18-238 (366)
57 KOG2028 ATPase related to the 98.5 2E-06 4.3E-11 86.5 12.8 173 131-327 139-331 (554)
58 PRK07003 DNA polymerase III su 98.5 6.9E-06 1.5E-10 92.4 18.2 176 130-334 16-223 (830)
59 PF13401 AAA_22: AAA domain; P 98.4 4.3E-07 9.4E-12 82.6 7.3 116 150-269 3-125 (131)
60 KOG0531 Protein phosphatase 1, 98.4 2.9E-08 6.3E-13 109.3 -0.8 230 514-780 70-315 (414)
61 KOG1909 Ran GTPase-activating 98.4 6.3E-08 1.4E-12 96.9 1.6 14 690-703 241-254 (382)
62 PF13855 LRR_8: Leucine rich r 98.4 1.4E-07 3E-12 72.6 3.0 57 541-598 2-60 (61)
63 PF13191 AAA_16: AAA ATPase do 98.4 7.6E-07 1.6E-11 86.5 8.8 46 131-176 1-49 (185)
64 PRK08084 DNA replication initi 98.4 3.5E-06 7.5E-11 84.7 13.7 168 131-333 24-210 (235)
65 PF05496 RuvB_N: Holliday junc 98.4 2.1E-06 4.5E-11 82.5 10.5 171 130-336 24-225 (233)
66 cd00009 AAA The AAA+ (ATPases 98.4 2.1E-06 4.6E-11 79.7 10.6 120 133-271 1-131 (151)
67 KOG1909 Ran GTPase-activating 98.4 8.8E-08 1.9E-12 95.9 1.0 238 513-781 27-309 (382)
68 KOG2120 SCF ubiquitin ligase, 98.4 1.5E-08 3.2E-13 98.8 -4.5 106 516-622 185-296 (419)
69 PRK09087 hypothetical protein; 98.4 4.9E-06 1.1E-10 82.8 12.8 139 151-333 44-196 (226)
70 cd01128 rho_factor Transcripti 98.3 7.4E-07 1.6E-11 89.4 6.7 97 149-247 14-115 (249)
71 PLN03150 hypothetical protein; 98.3 6.9E-07 1.5E-11 103.0 7.3 104 517-623 419-526 (623)
72 PTZ00202 tuzin; Provisional 98.3 3.5E-05 7.5E-10 80.9 18.9 155 130-300 262-434 (550)
73 PF13173 AAA_14: AAA domain 98.3 1.4E-06 3E-11 78.7 7.4 116 151-291 2-126 (128)
74 PLN03025 replication factor C 98.3 8.8E-06 1.9E-10 86.1 14.5 175 130-328 13-196 (319)
75 PRK05564 DNA polymerase III su 98.3 1.4E-05 3.1E-10 84.3 15.7 174 131-332 5-190 (313)
76 KOG2982 Uncharacterized conser 98.3 3.1E-07 6.8E-12 89.8 2.8 210 517-764 46-267 (418)
77 PRK12402 replication factor C 98.3 1.2E-05 2.6E-10 86.3 15.5 191 130-331 15-225 (337)
78 PRK13341 recombination factor 98.3 4.3E-06 9.2E-11 96.5 12.3 164 131-327 29-212 (725)
79 PRK09376 rho transcription ter 98.3 2E-06 4.4E-11 89.7 8.7 92 149-247 167-268 (416)
80 PF00308 Bac_DnaA: Bacterial d 98.3 1.4E-05 3E-10 79.2 14.3 177 132-332 11-208 (219)
81 PRK05642 DNA replication initi 98.3 1.3E-05 2.9E-10 80.4 13.7 147 152-333 46-209 (234)
82 PRK12323 DNA polymerase III su 98.3 1.6E-05 3.4E-10 88.4 15.0 191 131-332 17-225 (700)
83 PRK14960 DNA polymerase III su 98.2 2.4E-05 5.3E-10 87.2 16.2 189 130-330 15-217 (702)
84 PRK00440 rfc replication facto 98.2 2.4E-05 5.1E-10 83.4 16.0 176 131-330 18-201 (319)
85 TIGR02903 spore_lon_C ATP-depe 98.2 0.00014 2.9E-09 83.5 22.7 200 131-335 155-398 (615)
86 KOG1859 Leucine-rich repeat pr 98.2 7.3E-08 1.6E-12 104.7 -3.6 127 516-660 164-291 (1096)
87 PRK14949 DNA polymerase III su 98.2 2E-05 4.4E-10 90.6 15.6 175 130-331 16-219 (944)
88 PRK14963 DNA polymerase III su 98.2 4.1E-05 8.9E-10 85.1 17.3 187 131-329 15-214 (504)
89 PRK15386 type III secretion pr 98.2 4.2E-06 9.1E-11 88.4 8.8 64 536-605 48-112 (426)
90 PRK14961 DNA polymerase III su 98.2 7E-05 1.5E-09 80.6 18.4 188 130-329 16-217 (363)
91 PRK08903 DnaA regulatory inact 98.2 2.6E-05 5.6E-10 78.4 14.0 167 131-336 19-203 (227)
92 TIGR01242 26Sp45 26S proteasom 98.2 1.2E-05 2.5E-10 86.9 11.6 166 131-326 123-328 (364)
93 PRK14962 DNA polymerase III su 98.2 5.2E-05 1.1E-09 83.6 16.7 183 130-336 14-223 (472)
94 PLN03150 hypothetical protein; 98.2 2.7E-06 5.9E-11 98.1 7.1 109 493-604 419-532 (623)
95 PRK07471 DNA polymerase III su 98.1 0.00011 2.3E-09 78.5 17.9 194 130-333 19-239 (365)
96 PRK06645 DNA polymerase III su 98.1 0.0001 2.3E-09 81.6 18.0 191 131-329 22-226 (507)
97 KOG4341 F-box protein containi 98.1 2.9E-07 6.4E-12 94.3 -2.0 108 516-624 138-254 (483)
98 PRK14956 DNA polymerase III su 98.1 2.1E-05 4.6E-10 85.1 11.9 187 130-327 18-217 (484)
99 KOG2543 Origin recognition com 98.1 6.2E-05 1.3E-09 77.0 14.0 163 130-299 6-192 (438)
100 TIGR02397 dnaX_nterm DNA polym 98.1 0.00016 3.4E-09 78.3 18.3 178 131-333 15-219 (355)
101 COG2255 RuvB Holliday junction 98.1 0.00024 5.2E-09 69.9 17.0 168 130-333 26-224 (332)
102 PF12799 LRR_4: Leucine Rich r 98.1 3.1E-06 6.7E-11 59.5 3.0 38 541-579 2-39 (44)
103 PRK15386 type III secretion pr 98.0 5.9E-06 1.3E-10 87.3 6.1 71 491-574 51-122 (426)
104 PRK14957 DNA polymerase III su 98.0 0.00013 2.9E-09 81.3 17.0 181 130-335 16-224 (546)
105 PRK08691 DNA polymerase III su 98.0 9.2E-05 2E-09 83.5 15.5 186 130-330 16-218 (709)
106 PRK14964 DNA polymerase III su 98.0 0.00017 3.6E-09 79.3 17.2 174 130-328 13-213 (491)
107 PRK14951 DNA polymerase III su 98.0 0.00013 2.9E-09 82.3 16.9 193 130-331 16-224 (618)
108 PRK03992 proteasome-activating 98.0 0.0001 2.3E-09 79.9 15.5 166 131-326 132-337 (389)
109 PRK07940 DNA polymerase III su 98.0 0.0002 4.3E-09 77.1 17.4 181 131-332 6-213 (394)
110 TIGR00767 rho transcription te 98.0 2.4E-05 5.1E-10 82.3 9.9 95 149-247 166-267 (415)
111 PRK09112 DNA polymerase III su 98.0 0.00024 5.2E-09 75.4 17.6 195 130-333 23-241 (351)
112 COG3903 Predicted ATPase [Gene 98.0 5.7E-06 1.2E-10 85.8 5.1 293 150-467 13-316 (414)
113 KOG1859 Leucine-rich repeat pr 98.0 1.6E-07 3.5E-12 102.2 -6.5 129 489-624 161-291 (1096)
114 PRK05896 DNA polymerase III su 98.0 7E-05 1.5E-09 83.5 13.7 192 130-334 16-223 (605)
115 PRK14087 dnaA chromosomal repl 98.0 6.8E-05 1.5E-09 82.6 13.4 165 152-336 142-323 (450)
116 PF12799 LRR_4: Leucine Rich r 98.0 6.4E-06 1.4E-10 57.9 3.4 41 564-605 1-41 (44)
117 PRK14958 DNA polymerase III su 98.0 0.00014 3.1E-09 81.1 15.7 176 130-330 16-218 (509)
118 TIGR00678 holB DNA polymerase 98.0 0.00032 7E-09 68.1 16.4 156 141-328 3-187 (188)
119 KOG4341 F-box protein containi 98.0 9.3E-07 2E-11 90.7 -2.0 86 690-780 346-436 (483)
120 PRK14955 DNA polymerase III su 97.9 0.00019 4E-09 78.3 15.3 194 131-329 17-225 (397)
121 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00013 2.8E-09 86.6 14.9 179 130-326 187-390 (852)
122 PRK07994 DNA polymerase III su 97.9 0.00016 3.5E-09 81.9 14.9 188 131-332 17-220 (647)
123 PRK14969 DNA polymerase III su 97.9 0.00021 4.5E-09 80.4 15.7 178 130-332 16-221 (527)
124 KOG2227 Pre-initiation complex 97.9 0.00054 1.2E-08 72.2 17.3 196 131-333 151-373 (529)
125 PRK14088 dnaA chromosomal repl 97.9 0.00018 3.9E-09 79.2 14.1 154 151-328 130-301 (440)
126 TIGR02639 ClpA ATP-dependent C 97.9 0.00011 2.4E-09 86.6 13.1 154 130-300 182-358 (731)
127 PRK14970 DNA polymerase III su 97.8 0.0005 1.1E-08 74.5 16.9 173 131-327 18-204 (367)
128 PRK14959 DNA polymerase III su 97.8 0.00046 1E-08 77.5 16.6 195 130-336 16-225 (624)
129 PRK11331 5-methylcytosine-spec 97.8 0.00011 2.5E-09 78.6 11.0 107 131-247 176-284 (459)
130 PF05621 TniB: Bacterial TniB 97.8 0.0006 1.3E-08 69.1 15.5 194 131-331 35-260 (302)
131 TIGR02881 spore_V_K stage V sp 97.8 0.00022 4.9E-09 73.1 12.8 45 131-175 7-66 (261)
132 TIGR02880 cbbX_cfxQ probable R 97.8 0.00066 1.4E-08 70.3 16.2 151 131-302 23-210 (284)
133 PRK09111 DNA polymerase III su 97.8 0.00057 1.2E-08 77.5 16.9 193 130-332 24-233 (598)
134 TIGR00362 DnaA chromosomal rep 97.8 0.00027 5.9E-09 77.6 14.0 154 152-330 137-308 (405)
135 CHL00181 cbbX CbbX; Provisiona 97.8 0.00062 1.3E-08 70.4 15.7 152 131-303 24-212 (287)
136 PRK07764 DNA polymerase III su 97.8 0.00054 1.2E-08 80.5 17.0 186 131-328 16-217 (824)
137 PRK14971 DNA polymerase III su 97.8 0.00082 1.8E-08 76.8 17.9 173 131-329 18-219 (614)
138 CHL00095 clpC Clp protease ATP 97.8 0.00018 4E-09 85.8 13.3 153 130-299 179-353 (821)
139 PRK12422 chromosomal replicati 97.8 0.00039 8.4E-09 76.4 14.7 148 152-325 142-306 (445)
140 PTZ00454 26S protease regulato 97.8 0.00037 8E-09 75.3 14.1 167 131-326 146-351 (398)
141 PRK14086 dnaA chromosomal repl 97.8 0.00097 2.1E-08 74.6 17.7 152 152-327 315-483 (617)
142 KOG2982 Uncharacterized conser 97.8 1.1E-05 2.4E-10 79.2 2.2 208 513-754 68-287 (418)
143 KOG4579 Leucine-rich repeat (L 97.8 3.7E-06 8E-11 73.0 -1.0 92 513-606 50-141 (177)
144 PRK14952 DNA polymerase III su 97.8 0.00092 2E-08 75.4 17.7 195 130-336 13-224 (584)
145 PRK06620 hypothetical protein; 97.8 0.00013 2.9E-09 71.8 9.8 131 152-328 45-185 (214)
146 PRK08451 DNA polymerase III su 97.8 0.00092 2E-08 74.3 17.3 174 130-332 14-218 (535)
147 PHA02544 44 clamp loader, smal 97.8 0.00049 1.1E-08 73.1 14.8 142 130-298 21-171 (316)
148 KOG3665 ZYG-1-like serine/thre 97.8 1.7E-05 3.7E-10 91.2 3.8 105 540-658 122-230 (699)
149 PTZ00361 26 proteosome regulat 97.8 0.00015 3.3E-09 78.7 10.9 167 131-326 184-389 (438)
150 PRK00149 dnaA chromosomal repl 97.8 0.00028 6.1E-09 78.5 13.3 155 151-329 148-319 (450)
151 PRK14954 DNA polymerase III su 97.8 0.00092 2E-08 76.0 17.5 197 131-332 17-229 (620)
152 KOG4579 Leucine-rich repeat (L 97.7 5.1E-06 1.1E-10 72.1 -0.5 106 517-625 28-136 (177)
153 PRK06305 DNA polymerase III su 97.7 0.0011 2.4E-08 73.2 17.5 176 131-332 18-223 (451)
154 PRK07133 DNA polymerase III su 97.7 0.00097 2.1E-08 76.2 17.2 186 131-333 19-221 (725)
155 PF10443 RNA12: RNA12 protein; 97.7 0.0033 7.2E-08 66.6 19.2 201 135-343 1-289 (431)
156 PRK14953 DNA polymerase III su 97.7 0.0018 4E-08 71.9 18.4 173 131-333 17-221 (486)
157 PF14516 AAA_35: AAA-like doma 97.7 0.0035 7.5E-08 66.5 19.5 199 130-339 11-246 (331)
158 PRK14950 DNA polymerase III su 97.7 0.00055 1.2E-08 78.4 14.0 193 130-333 16-222 (585)
159 PRK11034 clpA ATP-dependent Cl 97.6 0.00031 6.7E-09 81.8 11.6 154 130-300 186-362 (758)
160 KOG3665 ZYG-1-like serine/thre 97.6 3E-05 6.5E-10 89.2 2.5 133 490-625 120-263 (699)
161 KOG1644 U2-associated snRNP A' 97.6 8.8E-05 1.9E-09 69.2 4.8 97 496-595 46-148 (233)
162 PRK14948 DNA polymerase III su 97.6 0.0027 6E-08 72.6 17.9 191 131-332 17-222 (620)
163 TIGR01241 FtsH_fam ATP-depende 97.6 0.0019 4.2E-08 72.8 16.5 167 131-326 56-260 (495)
164 PRK10865 protein disaggregatio 97.6 0.00062 1.3E-08 81.2 13.1 152 130-300 178-354 (857)
165 COG0593 DnaA ATPase involved i 97.5 0.0011 2.5E-08 70.4 13.4 136 151-309 113-266 (408)
166 TIGR03689 pup_AAA proteasome A 97.5 0.0007 1.5E-08 74.8 12.2 154 131-302 183-380 (512)
167 TIGR03346 chaperone_ClpB ATP-d 97.5 0.0008 1.7E-08 80.7 13.6 153 130-300 173-349 (852)
168 KOG1644 U2-associated snRNP A' 97.5 8.5E-05 1.9E-09 69.3 4.1 103 516-622 42-150 (233)
169 PRK08116 hypothetical protein; 97.5 0.00026 5.6E-09 72.4 7.9 98 152-269 115-220 (268)
170 PRK06647 DNA polymerase III su 97.5 0.0035 7.6E-08 70.9 17.5 189 130-331 16-219 (563)
171 PRK14965 DNA polymerase III su 97.5 0.0017 3.7E-08 74.1 15.0 192 130-334 16-223 (576)
172 PF05673 DUF815: Protein of un 97.5 0.0068 1.5E-07 59.5 16.6 46 131-176 28-77 (249)
173 PRK05563 DNA polymerase III su 97.4 0.0061 1.3E-07 69.2 18.3 187 130-329 16-217 (559)
174 PRK08118 topology modulation p 97.4 8.4E-05 1.8E-09 70.3 2.8 36 152-187 2-37 (167)
175 KOG0989 Replication factor C, 97.4 0.0011 2.4E-08 66.2 10.3 178 130-326 36-224 (346)
176 KOG0741 AAA+-type ATPase [Post 97.4 0.0035 7.7E-08 66.9 14.2 142 149-322 536-704 (744)
177 PF04665 Pox_A32: Poxvirus A32 97.4 0.0003 6.4E-09 69.5 5.9 36 152-190 14-49 (241)
178 TIGR00763 lon ATP-dependent pr 97.3 0.011 2.3E-07 70.5 19.5 46 130-175 320-371 (775)
179 smart00382 AAA ATPases associa 97.3 0.0007 1.5E-08 62.0 7.8 88 152-248 3-91 (148)
180 PRK10787 DNA-binding ATP-depen 97.3 0.011 2.4E-07 69.7 18.9 154 130-300 322-506 (784)
181 COG5238 RNA1 Ran GTPase-activa 97.3 8.1E-05 1.8E-09 72.3 1.1 87 515-604 29-136 (388)
182 COG0466 Lon ATP-dependent Lon 97.3 0.0019 4.2E-08 71.8 11.6 154 130-300 323-508 (782)
183 COG1222 RPT1 ATP-dependent 26S 97.3 0.0054 1.2E-07 62.7 13.7 192 132-353 153-393 (406)
184 PRK12377 putative replication 97.3 0.001 2.3E-08 66.7 8.6 75 150-246 100-174 (248)
185 KOG2004 Mitochondrial ATP-depe 97.2 0.01 2.2E-07 65.9 16.4 101 130-247 411-517 (906)
186 PRK05707 DNA polymerase III su 97.2 0.0073 1.6E-07 63.6 15.2 91 234-332 105-203 (328)
187 PRK12608 transcription termina 97.2 0.0024 5.2E-08 67.1 11.3 106 140-247 121-232 (380)
188 PRK10536 hypothetical protein; 97.2 0.0041 9E-08 61.8 12.2 133 131-271 56-214 (262)
189 CHL00176 ftsH cell division pr 97.2 0.0049 1.1E-07 70.6 14.6 166 131-325 184-387 (638)
190 PRK07261 topology modulation p 97.2 0.001 2.3E-08 63.2 7.3 67 153-246 2-68 (171)
191 PF02562 PhoH: PhoH-like prote 97.2 0.0014 3E-08 63.3 8.1 129 134-270 4-156 (205)
192 PRK07399 DNA polymerase III su 97.2 0.017 3.6E-07 60.6 16.8 192 131-332 5-221 (314)
193 PF00004 AAA: ATPase family as 97.2 0.00091 2E-08 60.6 6.6 22 154-175 1-22 (132)
194 KOG2228 Origin recognition com 97.2 0.0032 7E-08 63.6 10.6 168 131-301 25-220 (408)
195 COG5238 RNA1 Ran GTPase-activa 97.1 0.0004 8.6E-09 67.7 4.0 85 491-577 29-133 (388)
196 COG3267 ExeA Type II secretory 97.1 0.024 5.2E-07 55.6 16.0 175 149-334 49-247 (269)
197 TIGR00602 rad24 checkpoint pro 97.1 0.0018 3.9E-08 73.6 9.6 46 130-175 84-134 (637)
198 COG1373 Predicted ATPase (AAA+ 97.1 0.0085 1.8E-07 65.1 14.2 134 134-296 21-163 (398)
199 KOG0733 Nuclear AAA ATPase (VC 97.1 0.009 1.9E-07 65.1 13.6 92 131-247 191-294 (802)
200 KOG0991 Replication factor C, 97.1 0.0013 2.9E-08 62.6 6.6 72 130-202 27-98 (333)
201 PRK08769 DNA polymerase III su 97.0 0.028 6E-07 58.7 16.7 175 136-333 10-209 (319)
202 PRK08058 DNA polymerase III su 97.0 0.023 5E-07 60.3 15.7 159 131-299 6-181 (329)
203 PRK07952 DNA replication prote 96.9 0.005 1.1E-07 61.7 9.8 90 137-247 83-174 (244)
204 KOG1514 Origin recognition com 96.9 0.028 6.2E-07 62.6 16.1 193 131-332 397-621 (767)
205 KOG2123 Uncharacterized conser 96.9 5.6E-05 1.2E-09 73.7 -4.0 78 517-598 20-99 (388)
206 PF00448 SRP54: SRP54-type pro 96.9 0.003 6.6E-08 61.2 7.8 90 151-244 1-92 (196)
207 PRK08181 transposase; Validate 96.9 0.0048 1E-07 62.8 9.3 102 144-270 101-209 (269)
208 KOG1947 Leucine rich repeat pr 96.8 0.00024 5.2E-09 80.4 -0.4 111 514-624 186-307 (482)
209 cd00983 recA RecA is a bacter 96.8 0.0091 2E-07 62.1 11.2 88 151-246 55-144 (325)
210 PF13177 DNA_pol3_delta2: DNA 96.8 0.015 3.3E-07 54.6 11.4 42 134-175 1-43 (162)
211 TIGR01243 CDC48 AAA family ATP 96.8 0.014 2.9E-07 69.4 13.6 169 131-328 179-383 (733)
212 PRK09361 radB DNA repair and r 96.8 0.0061 1.3E-07 61.1 9.2 45 151-199 23-67 (225)
213 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0022 4.9E-08 67.0 6.0 57 131-187 52-118 (361)
214 TIGR01243 CDC48 AAA family ATP 96.8 0.021 4.6E-07 67.8 15.1 167 131-326 454-657 (733)
215 PF13207 AAA_17: AAA domain; P 96.8 0.0013 2.7E-08 58.7 3.6 23 153-175 1-23 (121)
216 KOG2739 Leucine-rich acidic nu 96.7 0.00081 1.8E-08 65.7 2.3 104 515-621 42-152 (260)
217 KOG2739 Leucine-rich acidic nu 96.7 0.00063 1.4E-08 66.5 1.3 82 538-624 41-128 (260)
218 PRK06526 transposase; Provisio 96.7 0.0032 6.9E-08 63.8 6.3 25 151-175 98-122 (254)
219 PRK06871 DNA polymerase III su 96.7 0.088 1.9E-06 55.1 17.1 173 137-329 9-200 (325)
220 cd01123 Rad51_DMC1_radA Rad51_ 96.7 0.0073 1.6E-07 61.0 9.1 95 150-246 18-126 (235)
221 TIGR02237 recomb_radB DNA repa 96.7 0.0073 1.6E-07 59.7 8.8 47 151-201 12-58 (209)
222 PRK08939 primosomal protein Dn 96.7 0.0059 1.3E-07 63.6 8.3 112 134-268 135-259 (306)
223 PRK06921 hypothetical protein; 96.7 0.0052 1.1E-07 62.8 7.7 39 150-190 116-154 (266)
224 cd01133 F1-ATPase_beta F1 ATP 96.6 0.0059 1.3E-07 61.7 7.7 96 150-247 68-175 (274)
225 PRK04296 thymidine kinase; Pro 96.6 0.0028 6E-08 61.4 5.2 112 152-271 3-117 (190)
226 PRK06835 DNA replication prote 96.6 0.0055 1.2E-07 64.4 7.3 36 152-190 184-219 (329)
227 CHL00195 ycf46 Ycf46; Provisio 96.6 0.027 5.8E-07 62.6 13.0 169 131-326 229-429 (489)
228 PRK06090 DNA polymerase III su 96.6 0.12 2.5E-06 54.1 17.0 172 137-332 10-201 (319)
229 COG0542 clpA ATP-binding subun 96.5 0.0052 1.1E-07 70.4 7.5 105 130-247 491-605 (786)
230 TIGR02012 tigrfam_recA protein 96.5 0.018 3.9E-07 59.9 10.9 89 150-246 54-144 (321)
231 cd01393 recA_like RecA is a b 96.5 0.017 3.7E-07 57.8 10.6 92 151-246 19-125 (226)
232 COG1223 Predicted ATPase (AAA+ 96.5 0.036 7.9E-07 54.1 11.8 166 130-325 121-318 (368)
233 PRK05541 adenylylsulfate kinas 96.5 0.0056 1.2E-07 58.7 6.6 36 150-188 6-41 (176)
234 COG1875 NYN ribonuclease and A 96.5 0.0078 1.7E-07 61.7 7.6 134 134-271 228-389 (436)
235 PRK06696 uridine kinase; Valid 96.5 0.0047 1E-07 61.7 5.8 42 134-175 2-46 (223)
236 PRK09354 recA recombinase A; P 96.5 0.03 6.4E-07 58.9 11.8 89 150-246 59-149 (349)
237 PF00485 PRK: Phosphoribulokin 96.4 0.023 5E-07 55.3 10.5 84 153-239 1-87 (194)
238 cd01120 RecA-like_NTPases RecA 96.4 0.009 1.9E-07 56.2 7.3 40 153-195 1-40 (165)
239 cd01394 radB RadB. The archaea 96.4 0.02 4.2E-07 57.1 9.9 43 150-195 18-60 (218)
240 cd03115 SRP The signal recogni 96.4 0.014 3E-07 55.7 8.2 90 153-246 2-93 (173)
241 KOG2123 Uncharacterized conser 96.3 0.00041 8.9E-09 67.8 -2.4 83 537-623 16-99 (388)
242 KOG1969 DNA replication checkp 96.3 0.0089 1.9E-07 66.6 7.2 72 151-247 326-399 (877)
243 PRK00771 signal recognition pa 96.3 0.029 6.4E-07 61.2 11.2 91 150-245 94-185 (437)
244 PRK14974 cell division protein 96.3 0.034 7.3E-07 58.5 11.3 92 150-246 139-233 (336)
245 TIGR02238 recomb_DMC1 meiotic 96.3 0.026 5.6E-07 59.0 10.4 95 151-246 96-202 (313)
246 KOG0730 AAA+-type ATPase [Post 96.3 0.063 1.4E-06 59.6 13.4 161 131-316 435-631 (693)
247 PRK10865 protein disaggregatio 96.3 0.037 8E-07 66.4 12.9 59 131-192 569-636 (857)
248 PF00154 RecA: recA bacterial 96.3 0.063 1.4E-06 55.8 12.9 89 151-247 53-143 (322)
249 PF07693 KAP_NTPase: KAP famil 96.3 0.065 1.4E-06 57.1 13.6 42 135-176 1-45 (325)
250 COG0470 HolB ATPase involved i 96.2 0.034 7.3E-07 59.2 11.3 136 131-286 2-167 (325)
251 PRK07993 DNA polymerase III su 96.2 0.21 4.6E-06 52.9 16.9 175 137-331 9-203 (334)
252 PF08423 Rad51: Rad51; InterP 96.2 0.013 2.9E-07 59.4 7.7 58 151-209 38-98 (256)
253 PRK14722 flhF flagellar biosyn 96.2 0.023 5E-07 60.4 9.6 88 151-245 137-225 (374)
254 TIGR00064 ftsY signal recognit 96.2 0.023 5.1E-07 58.2 9.4 92 149-245 70-164 (272)
255 KOG0733 Nuclear AAA ATPase (VC 96.2 0.071 1.5E-06 58.4 13.1 150 150-326 544-718 (802)
256 KOG0735 AAA+-type ATPase [Post 96.2 0.01 2.2E-07 65.8 6.9 73 151-246 431-505 (952)
257 PRK09270 nucleoside triphospha 96.2 0.039 8.4E-07 55.4 10.7 27 149-175 31-57 (229)
258 COG0542 clpA ATP-binding subun 96.2 0.022 4.7E-07 65.5 9.6 152 131-300 171-346 (786)
259 PLN03187 meiotic recombination 96.1 0.03 6.5E-07 59.1 10.0 61 150-211 125-188 (344)
260 PRK09183 transposase/IS protei 96.1 0.028 6E-07 57.3 9.5 24 152-175 103-126 (259)
261 PRK10867 signal recognition pa 96.1 0.04 8.8E-07 60.0 11.2 93 150-245 99-193 (433)
262 cd01131 PilT Pilus retraction 96.1 0.0064 1.4E-07 59.4 4.6 107 152-272 2-111 (198)
263 TIGR03499 FlhF flagellar biosy 96.1 0.033 7.2E-07 57.6 10.1 88 150-244 193-281 (282)
264 PRK15455 PrkA family serine pr 96.1 0.0062 1.3E-07 67.1 4.7 46 130-175 76-127 (644)
265 PRK10733 hflB ATP-dependent me 96.1 0.098 2.1E-06 60.8 14.9 148 131-303 153-338 (644)
266 PRK04040 adenylate kinase; Pro 96.1 0.017 3.6E-07 55.8 7.2 48 151-210 2-49 (188)
267 TIGR03345 VI_ClpV1 type VI sec 96.1 0.013 2.9E-07 69.9 7.9 46 130-175 566-620 (852)
268 cd03238 ABC_UvrA The excision 96.1 0.036 7.7E-07 52.7 9.2 123 150-284 20-161 (176)
269 PRK04301 radA DNA repair and r 96.1 0.043 9.4E-07 58.0 10.8 58 150-209 101-162 (317)
270 TIGR02239 recomb_RAD51 DNA rep 96.0 0.039 8.4E-07 57.9 10.0 60 150-210 95-157 (316)
271 COG4608 AppF ABC-type oligopep 96.0 0.029 6.2E-07 55.9 8.4 124 150-277 38-177 (268)
272 TIGR03346 chaperone_ClpB ATP-d 96.0 0.023 5E-07 68.3 9.4 60 130-192 565-633 (852)
273 PRK11889 flhF flagellar biosyn 96.0 0.065 1.4E-06 56.8 11.4 90 150-246 240-331 (436)
274 PRK12727 flagellar biosynthesi 96.0 0.055 1.2E-06 59.6 11.2 89 150-245 349-438 (559)
275 cd03216 ABC_Carb_Monos_I This 96.0 0.015 3.3E-07 54.8 6.2 113 150-274 25-146 (163)
276 PRK06547 hypothetical protein; 95.9 0.011 2.3E-07 56.1 5.0 34 142-175 6-39 (172)
277 COG0572 Udk Uridine kinase [Nu 95.9 0.017 3.6E-07 55.9 6.3 79 150-236 7-85 (218)
278 PRK13695 putative NTPase; Prov 95.9 0.016 3.4E-07 55.4 6.3 34 153-188 2-35 (174)
279 TIGR00959 ffh signal recogniti 95.9 0.04 8.8E-07 60.0 10.0 93 150-245 98-192 (428)
280 COG1618 Predicted nucleotide k 95.9 0.01 2.2E-07 53.7 4.5 33 151-185 5-37 (179)
281 COG1484 DnaC DNA replication p 95.9 0.038 8.3E-07 56.0 9.3 92 134-247 87-179 (254)
282 COG0464 SpoVK ATPases of the A 95.9 0.1 2.2E-06 59.1 13.6 148 131-303 243-426 (494)
283 KOG0734 AAA+-type ATPase conta 95.9 0.019 4.2E-07 61.6 7.1 45 131-175 305-361 (752)
284 COG0468 RecA RecA/RadA recombi 95.9 0.042 9.1E-07 55.9 9.2 92 150-247 59-153 (279)
285 PRK06964 DNA polymerase III su 95.9 0.41 8.8E-06 50.7 16.9 87 234-332 131-225 (342)
286 PRK12726 flagellar biosynthesi 95.9 0.083 1.8E-06 55.8 11.6 90 150-246 205-296 (407)
287 PTZ00035 Rad51 protein; Provis 95.9 0.057 1.2E-06 57.2 10.6 60 150-210 117-179 (337)
288 PRK04132 replication factor C 95.9 0.14 3E-06 60.4 14.5 150 159-332 574-731 (846)
289 PF00560 LRR_1: Leucine Rich R 95.8 0.0046 1E-07 36.1 1.3 19 542-561 2-20 (22)
290 TIGR02858 spore_III_AA stage I 95.8 0.044 9.6E-07 55.9 9.3 130 139-273 98-232 (270)
291 PF01695 IstB_IS21: IstB-like 95.8 0.0094 2E-07 56.9 4.1 75 150-247 46-120 (178)
292 TIGR03877 thermo_KaiC_1 KaiC d 95.8 0.05 1.1E-06 54.8 9.6 49 150-203 20-68 (237)
293 cd03230 ABC_DR_subfamily_A Thi 95.8 0.032 7E-07 53.2 7.8 118 150-274 25-159 (173)
294 PRK12723 flagellar biosynthesi 95.8 0.085 1.8E-06 56.7 11.6 91 150-246 173-265 (388)
295 PRK06067 flagellar accessory p 95.8 0.05 1.1E-06 54.8 9.5 90 150-245 24-130 (234)
296 COG1136 SalX ABC-type antimicr 95.8 0.044 9.6E-07 53.6 8.6 123 150-276 30-209 (226)
297 COG2884 FtsE Predicted ATPase 95.8 0.083 1.8E-06 49.4 9.7 124 150-277 27-204 (223)
298 PLN03186 DNA repair protein RA 95.8 0.051 1.1E-06 57.4 9.7 60 151-211 123-185 (342)
299 cd03247 ABCC_cytochrome_bd The 95.7 0.062 1.3E-06 51.5 9.6 126 150-284 27-169 (178)
300 cd03214 ABC_Iron-Siderophores_ 95.7 0.052 1.1E-06 52.1 9.1 119 150-273 24-161 (180)
301 PF13306 LRR_5: Leucine rich r 95.7 0.024 5.3E-07 50.9 6.3 101 513-620 9-111 (129)
302 KOG0728 26S proteasome regulat 95.7 0.25 5.5E-06 47.9 13.1 162 132-319 148-350 (404)
303 PRK07667 uridine kinase; Provi 95.7 0.025 5.4E-07 55.0 6.7 37 139-175 3-41 (193)
304 TIGR01425 SRP54_euk signal rec 95.7 0.081 1.7E-06 57.3 11.0 26 150-175 99-124 (429)
305 PRK09519 recA DNA recombinatio 95.7 0.097 2.1E-06 60.8 12.3 88 150-245 59-148 (790)
306 PF13238 AAA_18: AAA domain; P 95.7 0.0092 2E-07 53.6 3.3 22 154-175 1-22 (129)
307 KOG1947 Leucine rich repeat pr 95.7 0.0028 6.2E-08 71.7 -0.1 213 536-784 184-415 (482)
308 PHA00729 NTP-binding motif con 95.7 0.016 3.4E-07 56.8 5.0 35 141-175 7-41 (226)
309 cd03246 ABCC_Protease_Secretio 95.7 0.047 1E-06 52.0 8.3 125 150-284 27-168 (173)
310 PF00560 LRR_1: Leucine Rich R 95.6 0.0038 8.3E-08 36.4 0.4 21 565-585 1-21 (22)
311 PRK10416 signal recognition pa 95.6 0.098 2.1E-06 54.9 11.2 92 150-246 113-207 (318)
312 TIGR00554 panK_bact pantothena 95.6 0.099 2.1E-06 53.8 11.0 82 149-235 60-141 (290)
313 TIGR02639 ClpA ATP-dependent C 95.6 0.031 6.8E-07 66.1 8.1 102 130-247 454-565 (731)
314 KOG0731 AAA+-type ATPase conta 95.6 0.24 5.3E-06 56.8 14.6 170 130-329 311-521 (774)
315 TIGR03881 KaiC_arch_4 KaiC dom 95.6 0.12 2.5E-06 51.9 11.2 53 150-208 19-71 (229)
316 COG2812 DnaX DNA polymerase II 95.5 0.089 1.9E-06 58.1 10.8 184 130-326 16-214 (515)
317 cd01121 Sms Sms (bacterial rad 95.5 0.071 1.5E-06 57.2 9.9 87 151-246 82-169 (372)
318 COG1102 Cmk Cytidylate kinase 95.5 0.02 4.4E-07 51.8 4.6 45 153-211 2-46 (179)
319 COG0563 Adk Adenylate kinase a 95.5 0.024 5.1E-07 54.0 5.5 23 153-175 2-24 (178)
320 cd02019 NK Nucleoside/nucleoti 95.5 0.011 2.5E-07 46.3 2.8 23 153-175 1-23 (69)
321 PLN00020 ribulose bisphosphate 95.4 0.026 5.7E-07 58.8 5.9 27 149-175 146-172 (413)
322 cd02027 APSK Adenosine 5'-phos 95.4 0.048 1E-06 50.5 7.3 23 153-175 1-23 (149)
323 PRK08699 DNA polymerase III su 95.4 0.35 7.6E-06 51.0 14.5 25 151-175 21-45 (325)
324 PRK08233 hypothetical protein; 95.4 0.012 2.7E-07 56.6 3.4 25 151-175 3-27 (182)
325 PRK05480 uridine/cytidine kina 95.4 0.014 3E-07 57.7 3.8 27 149-175 4-30 (209)
326 KOG0743 AAA+-type ATPase [Post 95.4 2.8 6.1E-05 45.1 20.7 71 261-337 338-414 (457)
327 KOG1532 GTPase XAB1, interacts 95.4 0.076 1.6E-06 52.3 8.5 89 150-239 18-120 (366)
328 KOG2035 Replication factor C, 95.4 0.58 1.3E-05 46.6 14.5 203 131-355 14-261 (351)
329 PF01583 APS_kinase: Adenylyls 95.4 0.021 4.6E-07 52.5 4.6 36 151-189 2-37 (156)
330 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.034 7.4E-07 51.1 6.0 101 150-274 25-131 (144)
331 PRK05703 flhF flagellar biosyn 95.4 0.13 2.7E-06 56.5 11.3 87 151-244 221-308 (424)
332 PTZ00088 adenylate kinase 1; P 95.4 0.015 3.3E-07 57.7 3.9 23 153-175 8-30 (229)
333 PF13671 AAA_33: AAA domain; P 95.3 0.015 3.3E-07 53.4 3.5 23 153-175 1-23 (143)
334 TIGR03878 thermo_KaiC_2 KaiC d 95.3 0.066 1.4E-06 54.7 8.5 40 150-192 35-74 (259)
335 PF13306 LRR_5: Leucine rich r 95.3 0.032 6.9E-07 50.1 5.6 114 493-615 13-129 (129)
336 cd03229 ABC_Class3 This class 95.3 0.047 1E-06 52.3 7.0 26 150-175 25-50 (178)
337 TIGR01650 PD_CobS cobaltochela 95.3 0.92 2E-05 47.3 16.7 61 131-199 46-106 (327)
338 PF13481 AAA_25: AAA domain; P 95.3 0.035 7.7E-07 54.0 6.2 42 152-193 33-81 (193)
339 PRK04328 hypothetical protein; 95.3 0.064 1.4E-06 54.5 8.2 54 150-209 22-75 (249)
340 PRK14721 flhF flagellar biosyn 95.3 0.12 2.7E-06 55.9 10.7 87 151-244 191-278 (420)
341 PTZ00301 uridine kinase; Provi 95.3 0.022 4.8E-07 55.8 4.7 25 151-175 3-27 (210)
342 PRK12724 flagellar biosynthesi 95.3 0.081 1.8E-06 56.8 9.2 59 151-211 223-282 (432)
343 PRK00889 adenylylsulfate kinas 95.3 0.052 1.1E-06 51.9 7.2 26 150-175 3-28 (175)
344 PF07728 AAA_5: AAA domain (dy 95.3 0.043 9.2E-07 50.1 6.3 75 154-246 2-76 (139)
345 COG2607 Predicted ATPase (AAA+ 95.3 0.1 2.2E-06 50.7 8.7 45 131-175 61-109 (287)
346 TIGR01069 mutS2 MutS2 family p 95.3 0.028 6E-07 66.3 6.2 191 150-355 321-523 (771)
347 PRK12597 F0F1 ATP synthase sub 95.2 0.066 1.4E-06 58.6 8.6 97 149-247 141-249 (461)
348 PRK06762 hypothetical protein; 95.2 0.017 3.6E-07 54.8 3.6 25 151-175 2-26 (166)
349 TIGR00235 udk uridine kinase. 95.2 0.017 3.8E-07 56.9 3.8 26 150-175 5-30 (207)
350 KOG0744 AAA+-type ATPase [Post 95.2 0.039 8.6E-07 55.6 6.1 82 151-246 177-261 (423)
351 KOG0473 Leucine-rich repeat pr 95.2 0.001 2.2E-08 63.4 -4.7 84 513-598 39-122 (326)
352 COG3640 CooC CO dehydrogenase 95.2 0.04 8.8E-07 53.3 5.9 50 153-211 2-51 (255)
353 PF03205 MobB: Molybdopterin g 95.2 0.041 8.8E-07 50.1 5.7 39 152-192 1-39 (140)
354 cd03222 ABC_RNaseL_inhibitor T 95.1 0.11 2.4E-06 49.5 8.8 26 150-175 24-49 (177)
355 cd03223 ABCD_peroxisomal_ALDP 95.1 0.081 1.8E-06 50.0 7.9 113 150-274 26-152 (166)
356 cd02025 PanK Pantothenate kina 95.1 0.1 2.2E-06 51.8 8.8 23 153-175 1-23 (220)
357 TIGR00150 HI0065_YjeE ATPase, 95.1 0.038 8.2E-07 49.4 5.1 39 137-175 6-46 (133)
358 PF06309 Torsin: Torsin; Inte 95.1 0.044 9.6E-07 48.0 5.3 44 131-174 26-76 (127)
359 PRK10463 hydrogenase nickel in 95.1 0.056 1.2E-06 55.2 6.9 36 140-175 93-128 (290)
360 PF06745 KaiC: KaiC; InterPro 95.1 0.022 4.8E-07 57.0 4.1 91 150-245 18-125 (226)
361 PF03308 ArgK: ArgK protein; 95.1 0.064 1.4E-06 53.2 7.1 61 138-199 14-76 (266)
362 PF08433 KTI12: Chromatin asso 95.1 0.035 7.5E-07 56.7 5.5 25 152-176 2-26 (270)
363 cd03228 ABCC_MRP_Like The MRP 95.1 0.091 2E-06 49.9 8.1 125 150-284 27-167 (171)
364 cd00561 CobA_CobO_BtuR ATP:cor 95.0 0.084 1.8E-06 48.9 7.4 116 152-271 3-139 (159)
365 TIGR00390 hslU ATP-dependent p 95.0 0.056 1.2E-06 57.8 7.0 45 131-175 13-71 (441)
366 PRK14723 flhF flagellar biosyn 95.0 0.19 4.1E-06 58.3 11.8 88 151-245 185-273 (767)
367 PRK13531 regulatory ATPase Rav 95.0 0.035 7.6E-07 60.5 5.6 43 131-175 21-63 (498)
368 PRK09280 F0F1 ATP synthase sub 95.0 0.09 2E-06 57.3 8.7 97 149-247 142-250 (463)
369 PRK03839 putative kinase; Prov 95.0 0.019 4.2E-07 55.1 3.4 23 153-175 2-24 (180)
370 PF00006 ATP-synt_ab: ATP synt 95.0 0.081 1.8E-06 51.9 7.7 91 151-246 15-116 (215)
371 PRK06995 flhF flagellar biosyn 95.0 0.12 2.7E-06 56.9 9.9 60 151-211 256-316 (484)
372 TIGR02236 recomb_radA DNA repa 95.0 0.096 2.1E-06 55.3 8.8 59 150-209 94-155 (310)
373 PF05970 PIF1: PIF1-like helic 95.0 0.062 1.3E-06 58.0 7.4 102 138-245 9-112 (364)
374 PRK06002 fliI flagellum-specif 95.0 0.048 1E-06 59.2 6.5 94 150-247 164-266 (450)
375 KOG0739 AAA+-type ATPase [Post 95.0 0.1 2.2E-06 52.1 8.0 91 130-246 133-236 (439)
376 cd01125 repA Hexameric Replica 94.9 0.2 4.2E-06 50.7 10.6 23 153-175 3-25 (239)
377 PRK13765 ATP-dependent proteas 94.9 0.049 1.1E-06 62.4 6.7 74 131-209 32-105 (637)
378 TIGR01360 aden_kin_iso1 adenyl 94.9 0.022 4.8E-07 55.1 3.5 26 150-175 2-27 (188)
379 KOG3347 Predicted nucleotide k 94.9 0.041 8.9E-07 49.0 4.7 73 151-238 7-79 (176)
380 PRK06217 hypothetical protein; 94.9 0.039 8.5E-07 53.1 5.2 24 152-175 2-25 (183)
381 COG1428 Deoxynucleoside kinase 94.9 0.021 4.6E-07 54.4 3.1 25 151-175 4-28 (216)
382 PRK08927 fliI flagellum-specif 94.9 0.075 1.6E-06 57.7 7.7 94 149-247 156-260 (442)
383 PF10236 DAP3: Mitochondrial r 94.9 0.56 1.2E-05 49.2 14.0 49 281-329 258-306 (309)
384 COG0541 Ffh Signal recognition 94.9 0.26 5.7E-06 52.4 11.3 91 150-244 99-191 (451)
385 COG4618 ArpD ABC-type protease 94.8 0.22 4.8E-06 53.8 10.6 25 151-175 362-386 (580)
386 PRK08533 flagellar accessory p 94.8 0.18 3.9E-06 50.4 9.7 53 151-209 24-76 (230)
387 COG1419 FlhF Flagellar GTP-bin 94.8 0.27 5.9E-06 52.1 11.2 89 150-245 202-291 (407)
388 cd01135 V_A-ATPase_B V/A-type 94.7 0.11 2.3E-06 52.6 7.8 98 150-247 68-178 (276)
389 PF00910 RNA_helicase: RNA hel 94.7 0.022 4.8E-07 49.3 2.7 23 154-176 1-23 (107)
390 TIGR02655 circ_KaiC circadian 94.7 0.15 3.2E-06 57.3 9.9 65 140-210 250-316 (484)
391 PRK14527 adenylate kinase; Pro 94.7 0.046 1E-06 53.1 5.1 26 150-175 5-30 (191)
392 TIGR03574 selen_PSTK L-seryl-t 94.7 0.067 1.5E-06 54.4 6.6 23 153-175 1-23 (249)
393 cd00267 ABC_ATPase ABC (ATP-bi 94.7 0.071 1.5E-06 49.9 6.3 112 151-275 25-145 (157)
394 PRK03846 adenylylsulfate kinas 94.7 0.082 1.8E-06 51.6 6.9 27 149-175 22-48 (198)
395 PRK08972 fliI flagellum-specif 94.7 0.082 1.8E-06 57.1 7.3 94 149-247 160-264 (444)
396 PRK00625 shikimate kinase; Pro 94.7 0.025 5.5E-07 53.6 3.1 23 153-175 2-24 (173)
397 KOG0736 Peroxisome assembly fa 94.7 0.4 8.6E-06 54.4 12.5 92 131-247 673-776 (953)
398 PRK05342 clpX ATP-dependent pr 94.7 0.087 1.9E-06 57.3 7.5 45 131-175 72-132 (412)
399 COG1703 ArgK Putative periplas 94.6 0.069 1.5E-06 53.7 6.1 61 140-201 38-100 (323)
400 TIGR00764 lon_rel lon-related 94.6 0.09 1.9E-06 60.4 8.0 74 131-209 19-92 (608)
401 cd03283 ABC_MutS-like MutS-lik 94.6 0.18 3.9E-06 49.1 9.0 24 152-175 26-49 (199)
402 cd03215 ABC_Carb_Monos_II This 94.6 0.11 2.4E-06 50.0 7.5 26 150-175 25-50 (182)
403 TIGR03305 alt_F1F0_F1_bet alte 94.6 0.093 2E-06 57.1 7.5 96 150-247 137-244 (449)
404 TIGR01039 atpD ATP synthase, F 94.6 0.14 3.1E-06 55.6 8.9 97 149-247 141-249 (461)
405 PRK11034 clpA ATP-dependent Cl 94.6 0.11 2.5E-06 60.9 8.8 45 131-175 459-512 (758)
406 PF12775 AAA_7: P-loop contain 94.6 0.047 1E-06 56.0 5.0 57 140-200 23-79 (272)
407 PF13245 AAA_19: Part of AAA d 94.6 0.11 2.3E-06 41.6 6.0 26 150-175 9-34 (76)
408 COG0396 sufC Cysteine desulfur 94.5 0.2 4.4E-06 48.5 8.7 59 224-282 151-216 (251)
409 COG1126 GlnQ ABC-type polar am 94.5 0.22 4.7E-06 47.8 8.8 123 150-276 27-202 (240)
410 CHL00095 clpC Clp protease ATP 94.5 0.12 2.7E-06 62.0 9.2 105 130-247 509-623 (821)
411 cd00544 CobU Adenosylcobinamid 94.5 0.12 2.5E-06 48.9 7.0 81 153-245 1-83 (169)
412 PRK05973 replicative DNA helic 94.4 0.24 5.3E-06 49.3 9.5 49 150-203 63-111 (237)
413 cd02024 NRK1 Nicotinamide ribo 94.4 0.027 5.8E-07 53.9 2.7 23 153-175 1-23 (187)
414 PF07726 AAA_3: ATPase family 94.4 0.029 6.3E-07 49.3 2.6 27 154-183 2-28 (131)
415 cd02023 UMPK Uridine monophosp 94.4 0.026 5.6E-07 55.2 2.7 23 153-175 1-23 (198)
416 PRK12678 transcription termina 94.4 0.08 1.7E-06 58.4 6.5 96 150-247 415-515 (672)
417 TIGR01359 UMP_CMP_kin_fam UMP- 94.4 0.027 5.8E-07 54.3 2.7 23 153-175 1-23 (183)
418 PRK15453 phosphoribulokinase; 94.4 0.24 5.2E-06 50.2 9.4 82 150-234 4-89 (290)
419 cd02028 UMPK_like Uridine mono 94.4 0.039 8.5E-07 52.8 3.8 23 153-175 1-23 (179)
420 PRK11823 DNA repair protein Ra 94.4 0.14 3.1E-06 56.5 8.6 87 151-246 80-167 (446)
421 PF07724 AAA_2: AAA domain (Cd 94.4 0.043 9.3E-07 51.9 3.9 42 151-195 3-45 (171)
422 PRK00131 aroK shikimate kinase 94.4 0.036 7.9E-07 52.8 3.5 25 151-175 4-28 (175)
423 TIGR00073 hypB hydrogenase acc 94.4 0.045 9.7E-07 53.9 4.2 32 144-175 15-46 (207)
424 PRK05201 hslU ATP-dependent pr 94.4 0.14 3E-06 54.9 7.9 74 131-207 16-107 (443)
425 smart00534 MUTSac ATPase domai 94.4 0.021 4.6E-07 55.1 1.8 117 153-276 1-128 (185)
426 PTZ00494 tuzin-like protein; P 94.3 0.97 2.1E-05 48.3 13.8 158 130-300 371-544 (664)
427 KOG0652 26S proteasome regulat 94.3 0.66 1.4E-05 45.5 11.7 53 123-175 162-229 (424)
428 PF08298 AAA_PrkA: PrkA AAA do 94.3 0.065 1.4E-06 55.7 5.3 75 131-211 62-149 (358)
429 KOG2170 ATPase of the AAA+ sup 94.3 0.13 2.9E-06 51.6 7.2 45 131-175 83-134 (344)
430 cd02029 PRK_like Phosphoribulo 94.3 0.22 4.7E-06 50.0 8.7 81 153-236 1-85 (277)
431 TIGR03575 selen_PSTK_euk L-ser 94.3 0.16 3.5E-06 53.4 8.3 22 154-175 2-23 (340)
432 TIGR02322 phosphon_PhnN phosph 94.3 0.037 8E-07 53.1 3.3 24 152-175 2-25 (179)
433 PF00158 Sigma54_activat: Sigm 94.3 0.18 3.9E-06 47.6 7.8 57 132-191 1-59 (168)
434 TIGR03498 FliI_clade3 flagella 94.3 0.084 1.8E-06 57.2 6.3 94 150-247 139-242 (418)
435 KOG0727 26S proteasome regulat 94.3 0.62 1.3E-05 45.4 11.3 45 131-175 156-213 (408)
436 COG1124 DppF ABC-type dipeptid 94.2 0.046 1E-06 53.3 3.8 26 150-175 32-57 (252)
437 COG1066 Sms Predicted ATP-depe 94.2 0.22 4.7E-06 52.5 8.8 99 139-247 79-180 (456)
438 PF00625 Guanylate_kin: Guanyl 94.2 0.055 1.2E-06 52.1 4.4 38 151-191 2-39 (183)
439 PRK10751 molybdopterin-guanine 94.2 0.048 1E-06 51.3 3.8 26 150-175 5-30 (173)
440 COG0467 RAD55 RecA-superfamily 94.2 0.12 2.6E-06 52.9 7.2 55 149-209 21-75 (260)
441 PRK08149 ATP synthase SpaL; Va 94.2 0.13 2.9E-06 55.7 7.5 94 149-247 149-253 (428)
442 COG0003 ArsA Predicted ATPase 94.1 0.084 1.8E-06 55.1 5.8 49 151-202 2-50 (322)
443 PRK05439 pantothenate kinase; 94.1 0.44 9.5E-06 49.5 10.9 83 149-236 84-166 (311)
444 PRK00279 adk adenylate kinase; 94.1 0.073 1.6E-06 52.8 5.2 23 153-175 2-24 (215)
445 PRK05922 type III secretion sy 94.1 0.19 4E-06 54.6 8.5 94 149-247 155-259 (434)
446 cd01122 GP4d_helicase GP4d_hel 94.1 0.38 8.2E-06 49.7 10.7 52 151-206 30-81 (271)
447 TIGR01040 V-ATPase_V1_B V-type 94.1 0.17 3.6E-06 54.9 8.0 99 149-247 139-259 (466)
448 COG3598 RepA RecA-family ATPas 94.1 0.19 4.2E-06 50.9 7.8 59 153-211 91-157 (402)
449 cd02020 CMPK Cytidine monophos 94.1 0.038 8.2E-07 51.0 2.8 23 153-175 1-23 (147)
450 cd00227 CPT Chloramphenicol (C 94.1 0.042 9.1E-07 52.5 3.2 24 152-175 3-26 (175)
451 TIGR00416 sms DNA repair prote 94.0 0.24 5.2E-06 54.8 9.4 99 139-246 80-181 (454)
452 TIGR02030 BchI-ChlI magnesium 94.0 0.078 1.7E-06 56.0 5.4 45 131-175 5-49 (337)
453 TIGR01420 pilT_fam pilus retra 94.0 0.11 2.3E-06 55.6 6.5 91 150-251 121-211 (343)
454 cd02021 GntK Gluconate kinase 94.0 0.038 8.2E-07 51.2 2.7 23 153-175 1-23 (150)
455 CHL00081 chlI Mg-protoporyphyr 94.0 0.058 1.3E-06 56.9 4.3 46 131-176 18-63 (350)
456 COG4088 Predicted nucleotide k 94.0 0.04 8.6E-07 52.0 2.7 24 152-175 2-25 (261)
457 cd03281 ABC_MSH5_euk MutS5 hom 94.0 0.077 1.7E-06 52.4 4.9 24 151-174 29-52 (213)
458 KOG1051 Chaperone HSP104 and r 94.0 0.37 8.1E-06 56.6 11.1 103 130-248 562-673 (898)
459 PRK15064 ABC transporter ATP-b 94.0 0.26 5.7E-06 56.3 10.0 26 150-175 26-51 (530)
460 PRK11147 ABC transporter ATPas 94.0 0.3 6.4E-06 57.1 10.6 26 150-175 28-53 (635)
461 COG0488 Uup ATPase components 93.9 0.19 4E-06 56.5 8.4 51 225-276 161-216 (530)
462 KOG0729 26S proteasome regulat 93.9 0.36 7.8E-06 47.4 9.1 45 131-175 178-235 (435)
463 PF13504 LRR_7: Leucine rich r 93.9 0.035 7.5E-07 30.0 1.3 14 566-579 3-16 (17)
464 PRK13949 shikimate kinase; Pro 93.9 0.046 9.9E-07 51.8 3.1 23 153-175 3-25 (169)
465 cd01136 ATPase_flagellum-secre 93.9 0.19 4.1E-06 52.5 7.8 93 150-247 68-171 (326)
466 TIGR00176 mobB molybdopterin-g 93.8 0.08 1.7E-06 49.2 4.5 34 153-188 1-34 (155)
467 PRK13947 shikimate kinase; Pro 93.8 0.048 1E-06 51.8 3.1 23 153-175 3-25 (171)
468 COG4133 CcmA ABC-type transpor 93.8 0.35 7.5E-06 45.4 8.4 24 152-175 29-52 (209)
469 cd00071 GMPK Guanosine monopho 93.8 0.046 9.9E-07 49.7 2.8 23 153-175 1-23 (137)
470 cd01129 PulE-GspE PulE/GspE Th 93.8 0.12 2.6E-06 52.8 6.1 103 134-251 63-165 (264)
471 TIGR00382 clpX endopeptidase C 93.8 0.21 4.5E-06 54.1 8.2 46 130-175 77-140 (413)
472 cd03243 ABC_MutS_homologs The 93.8 0.054 1.2E-06 53.1 3.5 22 152-173 30-51 (202)
473 COG1131 CcmA ABC-type multidru 93.8 0.51 1.1E-05 49.1 10.8 25 151-175 31-55 (293)
474 TIGR03263 guanyl_kin guanylate 93.8 0.044 9.6E-07 52.6 2.8 24 152-175 2-25 (180)
475 PF02374 ArsA_ATPase: Anion-tr 93.7 0.085 1.8E-06 55.1 5.0 46 152-200 2-47 (305)
476 PRK09099 type III secretion sy 93.7 0.13 2.9E-06 55.9 6.6 95 149-247 161-265 (441)
477 PRK14530 adenylate kinase; Pro 93.7 0.053 1.1E-06 53.8 3.3 24 152-175 4-27 (215)
478 COG3638 ABC-type phosphate/pho 93.7 0.12 2.6E-06 50.2 5.5 57 151-211 30-87 (258)
479 KOG0473 Leucine-rich repeat pr 93.7 0.0034 7.3E-08 60.0 -4.9 82 491-575 41-122 (326)
480 PF03193 DUF258: Protein of un 93.7 0.087 1.9E-06 48.8 4.3 36 137-175 24-59 (161)
481 PRK00409 recombination and DNA 93.6 0.06 1.3E-06 63.7 4.1 179 149-354 325-527 (782)
482 PF03266 NTPase_1: NTPase; In 93.6 0.096 2.1E-06 49.4 4.7 22 154-175 2-23 (168)
483 cd01132 F1_ATPase_alpha F1 ATP 93.6 0.22 4.7E-06 50.5 7.4 93 150-247 68-173 (274)
484 COG1936 Predicted nucleotide k 93.6 0.049 1.1E-06 50.2 2.5 20 153-172 2-21 (180)
485 TIGR01351 adk adenylate kinase 93.6 0.084 1.8E-06 52.1 4.5 22 154-175 2-23 (210)
486 KOG3864 Uncharacterized conser 93.6 0.02 4.4E-07 53.9 -0.0 34 690-723 151-187 (221)
487 TIGR02640 gas_vesic_GvpN gas v 93.5 0.24 5.2E-06 50.7 7.8 56 137-200 9-64 (262)
488 cd01672 TMPK Thymidine monopho 93.5 0.16 3.5E-06 49.5 6.3 23 153-175 2-24 (200)
489 PRK06793 fliI flagellum-specif 93.5 0.21 4.5E-06 54.3 7.5 123 149-275 154-291 (432)
490 PRK07196 fliI flagellum-specif 93.5 0.23 5E-06 54.0 7.9 94 149-247 153-257 (434)
491 COG2401 ABC-type ATPase fused 93.5 0.12 2.5E-06 54.2 5.3 149 132-280 373-578 (593)
492 PRK13407 bchI magnesium chelat 93.5 0.089 1.9E-06 55.4 4.6 45 131-175 9-53 (334)
493 COG0529 CysC Adenylylsulfate k 93.5 0.12 2.6E-06 47.8 4.7 29 147-175 19-47 (197)
494 PRK07132 DNA polymerase III su 93.5 3.7 7.9E-05 42.7 16.3 163 139-331 5-184 (299)
495 cd00464 SK Shikimate kinase (S 93.4 0.063 1.4E-06 50.0 3.2 22 154-175 2-23 (154)
496 PRK12339 2-phosphoglycerate ki 93.4 0.071 1.5E-06 51.7 3.6 25 151-175 3-27 (197)
497 PRK00300 gmk guanylate kinase; 93.4 0.059 1.3E-06 53.0 3.1 26 150-175 4-29 (205)
498 TIGR02902 spore_lonB ATP-depen 93.4 0.13 2.8E-06 58.3 6.2 45 131-175 66-110 (531)
499 cd00820 PEPCK_HprK Phosphoenol 93.4 0.07 1.5E-06 45.6 2.9 22 151-172 15-36 (107)
500 PRK10078 ribose 1,5-bisphospho 93.3 0.059 1.3E-06 52.0 2.9 24 152-175 3-26 (186)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-95 Score=840.02 Aligned_cols=769 Identities=35% Similarity=0.586 Sum_probs=625.9
Q ss_pred HHH-HHhhHHHHHhhhhchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc---c-------------hhhh-
Q 003753 7 IWD-IVKGCWNCTANASSYIRHLEANVDALSQAERELDSSCKDVSGRIEQAIEA-DFV---P-------------REQR- 67 (798)
Q Consensus 7 ~~~-~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~-~~~---~-------------~l~~- 67 (798)
.++ .++++.+.+.++...+.+.++++..|++++..|++++.|++++.++...+ .|. + ++..
T Consensus 4 ~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~ 83 (889)
T KOG4658|consen 4 CVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEI 83 (889)
T ss_pred EEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345 66788888999999999999999999999999999999998765544322 121 1 1110
Q ss_pred ----------hHHHHhhhhcCCCCCCCcccccchHHHHHHHHHHHHHhhhcCCCccccC-CCCCCcccccCCCCcc-cch
Q 003753 68 ----------GEKEKAKLCLGGFCSQNCWSGYNVGKEVVEMTEAVKDQTSKGHFDVVAD-PRPPPVVEILPKENNI-VGI 135 (798)
Q Consensus 68 ----------~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-vGr 135 (798)
.....++.|..++|.+....-|.+++++-.+.+.++.+..++.|..... ..++...+.+|..+.. ||.
T Consensus 84 ~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~ 163 (889)
T KOG4658|consen 84 ERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGL 163 (889)
T ss_pred HHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccccccH
Confidence 0112233455566666666778888888888888988887776665543 2333444555554333 999
Q ss_pred hHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCc
Q 003753 136 ESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDK 215 (798)
Q Consensus 136 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 215 (798)
+..++++++.|.+++..+++|+||||+||||||++++|+...++++||.++||+||++++...++++|++.++.... .
T Consensus 164 e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~--~ 241 (889)
T KOG4658|consen 164 ETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE--E 241 (889)
T ss_pred HHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc--c
Confidence 99999999999887779999999999999999999999995489999999999999999999999999999987552 2
Q ss_pred cccCCHHHHHHHHHHHhcCCcEEEEEecccCcccccccCCC---CCCCcEEEEeCCchHHhhh-cCCCcceeccCCChHH
Q 003753 216 WKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIELSEAGVP---VQNASKIVFTTIFEEVCSS-MSVDWRFKVDYLPQEE 291 (798)
Q Consensus 216 ~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~~p---~~~gs~iivTTR~~~v~~~-~~~~~~~~l~~L~~~~ 291 (798)
+.....++.+..|.+.|+++||+|||||||+..+|..++.| ..+||+|++|||+.+||.. +++...+++++|+++|
T Consensus 242 ~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~e 321 (889)
T KOG4658|consen 242 WEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEE 321 (889)
T ss_pred cchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccc
Confidence 34445588999999999999999999999999999998776 5578999999999999998 8888999999999999
Q ss_pred HHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHHHhcCCCChhHHHHHHHHHhcC-CCCCCCcccchhhhh
Q 003753 292 AWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRY-PSGFESIGTHVFPLL 370 (798)
Q Consensus 292 a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~-~~~~~~~~~~i~~~l 370 (798)
||+||++.++......++.++++|++++++|+|+|||++++|+.|+.+++..+|+++.+.+.+. ..+.+++.+.+++++
T Consensus 322 aW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iL 401 (889)
T KOG4658|consen 322 AWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPIL 401 (889)
T ss_pred cHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhh
Confidence 9999999999887677777999999999999999999999999999999999999999999888 566667778999999
Q ss_pred hhhhcCCCchhHhHHHHhhcCCCCCceecHHHHHHHHHhcCCCcCCccHHHHHHhHHHHHHHHHHcccccccccCCCcCc
Q 003753 371 KFSYDRLTSETHKTCFLYGSLFPRNQIIMKDELIELWIGEGLLRDSHNIAVARREGKFILESLKLACLLEEVEVNNSEDF 450 (798)
Q Consensus 371 ~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~ 450 (798)
++||+.||++ +|.||+|||+||+||.|+++.++.+|+||||+.+...+..+++.|+.|+.+|++++|++.....+...+
T Consensus 402 klSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~ 480 (889)
T KOG4658|consen 402 KLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKET 480 (889)
T ss_pred hccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeE
Confidence 9999999965 999999999999999999999999999999999976788999999999999999999999864344689
Q ss_pred EEEccchHHHHHHHHhhcCCc-cEEEEecCCcccchhhhhchhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccc--
Q 003753 451 VKMHNMLRDMALWIASSQGAN-KILVFQETDKSIKEQETASWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTM-- 527 (798)
Q Consensus 451 ~~mHdlv~d~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~-- 527 (798)
|+|||+|||+|.++|++.+.+ ++.++..+.+....|....|..+|+++++++ .+..++ ....+++|++|.+.+|.
T Consensus 481 ~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~-~~~~~~-~~~~~~~L~tLll~~n~~~ 558 (889)
T KOG4658|consen 481 VKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNN-KIEHIA-GSSENPKLRTLLLQRNSDW 558 (889)
T ss_pred EEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEecc-chhhcc-CCCCCCccceEEEeecchh
Confidence 999999999999999976653 3577776667777888889999999999999 888888 66788899999999995
Q ss_pred cccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCccccCCCcccEEeCCCCCCcccccchh
Q 003753 528 IKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGM 607 (798)
Q Consensus 528 ~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~ 607 (798)
+..++..+|..|+.||+|||++|..+..+|++|++|.+||||+++++.++.||.++++|++|.+|++..+..+..+|. +
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i 637 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-I 637 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-h
Confidence 889999999999999999999998999999999999999999999999999999999999999999999987777754 4
Q ss_pred hcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecccchhhhhh-------------------
Q 003753 608 LSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDSLNKLKS------------------- 668 (798)
Q Consensus 608 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~------------------- 668 (798)
+..|++|++|.+...... .+...+.++.+|.+|+.+.++......+..+..
T Consensus 638 ~~~L~~Lr~L~l~~s~~~----------~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~ 707 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSALS----------NDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKR 707 (889)
T ss_pred hhhcccccEEEeeccccc----------cchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccc
Confidence 777999999999875422 145677888889999888886554411121111
Q ss_pred ----hhhhcccceeeee---ccCc-----------hh-hhccCceEEeecc-CCCCCCcccCCCCccEEEeecCCchhhh
Q 003753 669 ----SLKLQSCIRRLVM---GLPE-----------AI-FSQDLQDLSIINC-SIKDLTCIVYIPRLRFLFAKDCPSLEEI 728 (798)
Q Consensus 669 ----~~~~~~~L~~L~l---~lp~-----------~~-lp~~L~~L~L~~~-~l~~l~~l~~l~~L~~L~L~~~~~l~~l 728 (798)
....+.+|+.|.+ ..+. .. | +++..+.+.+| ....+.|....|+|+.|.+..|..++++
T Consensus 708 ~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f-~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 708 TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCF-PNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred eeecccccccCcceEEEEcCCCchhhcccccccchhhhH-HHHHHHHhhccccccccchhhccCcccEEEEecccccccC
Confidence 1112234444444 1110 11 4 45555555555 5555556667899999999999999988
Q ss_pred hccccccCCCCccccccccccee-ecCCccchhhcccCCCCCCCcceeeeccCCCCCCCCCCCCC
Q 003753 729 IASDLRFEPSEENLSMFLHLRQA-YFFKLPNLKNICHKAMAFPSLERIYVHGCPSLRKLPLSLES 792 (798)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~L~~L-~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~ 792 (798)
++..............|.++..+ .+.+.+.+..+......+++|+.+.+..||+++++|.....
T Consensus 787 i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~ 851 (889)
T KOG4658|consen 787 IPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTL 851 (889)
T ss_pred CCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCcccccc
Confidence 75332221222234567777777 57777888888777777888999999999999999987543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.6e-62 Score=594.42 Aligned_cols=616 Identities=21% Similarity=0.306 Sum_probs=429.3
Q ss_pred CcccchhHHHHHHHHHhh--cCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEc---CCc-----------
Q 003753 130 NNIVGIESRLSEVWRYIE--DDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKA---STE----------- 193 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v---s~~----------- 193 (798)
+++|||+..++++..+|. .+++++|+||||||+||||||+++|+.. ...|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 379999999999999883 4678999999999999999999999987 678998888742 111
Q ss_pred cC-HHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcccccccCCC---CCCCcEEEEeCCc
Q 003753 194 LN-IEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIELSEAGVP---VQNASKIVFTTIF 269 (798)
Q Consensus 194 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~~p---~~~gs~iivTTR~ 269 (798)
++ ...++.+++.++..... ..... ...+++.++++|+||||||||+..+|+.+... .++||+||||||+
T Consensus 261 ~~~~~~l~~~~l~~il~~~~---~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd 333 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKD---IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKD 333 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCC---cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCc
Confidence 11 12344455544422211 01111 24577889999999999999998877776432 4789999999999
Q ss_pred hHHhhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHHHhcCCCChhHHHHHH
Q 003753 270 EEVCSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGSAMASRRDPDNWRYAI 349 (798)
Q Consensus 270 ~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~~ 349 (798)
.+++..++...+|+++.|++++||+||+++||+... .++++.+++++|+++|+|+||||+++|++|+. ++..+|+.++
T Consensus 334 ~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~-~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l 411 (1153)
T PLN03210 334 KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS-PPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDML 411 (1153)
T ss_pred HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHH
Confidence 999988888889999999999999999999997652 34578899999999999999999999999997 5889999999
Q ss_pred HHHhcCCCCCCCcccchhhhhhhhhcCCCchhHhHHHHhhcCCCCCceecHHHHHHHHHhcCCCcCCccHHHHHHhHHHH
Q 003753 350 EELQRYPSGFESIGTHVFPLLKFSYDRLTSETHKTCFLYGSLFPRNQIIMKDELIELWIGEGLLRDSHNIAVARREGKFI 429 (798)
Q Consensus 350 ~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~ 429 (798)
++++... ...+..+|++||+.|+++..|.||+++|+|+.+..++ .+..|++.+..... ..
T Consensus 412 ~~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~~-----------~~ 471 (1153)
T PLN03210 412 PRLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDVN-----------IG 471 (1153)
T ss_pred HHHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCch-----------hC
Confidence 9988643 2479999999999998744899999999999887654 46778887654322 23
Q ss_pred HHHHHHcccccccccCCCcCcEEEccchHHHHHHHHhhcCCc---cEEEEecCC---------cccc-------------
Q 003753 430 LESLKLACLLEEVEVNNSEDFVKMHNMLRDMALWIASSQGAN---KILVFQETD---------KSIK------------- 484 (798)
Q Consensus 430 l~~L~~~sll~~~~~~~~~~~~~mHdlv~d~a~~~~~~~~~~---~~~~~~~~~---------~~~~------------- 484 (798)
++.|+++||++.. ...++|||++|+||+++++++..+ ..+++...+ +...
T Consensus 472 l~~L~~ksLi~~~-----~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~ 546 (1153)
T PLN03210 472 LKNLVDKSLIHVR-----EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDE 546 (1153)
T ss_pred hHHHHhcCCEEEc-----CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccce
Confidence 8899999999875 357999999999999998775311 122221100 0000
Q ss_pred --h--hhhhch-------------------------------hceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccc
Q 003753 485 --E--QETASW-------------------------------KEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIK 529 (798)
Q Consensus 485 --~--~~~~~~-------------------------------~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 529 (798)
+ .....+ .+++.|.+.++ .++.+|..+ .+.+|+.|++.+|.+.
T Consensus 547 ~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 547 LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSKLE 624 (1153)
T ss_pred eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCcccc
Confidence 0 001111 23555555555 556666333 4567777777777777
Q ss_pred cccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCC-CCcccCccccCCCcccEEeCCCCCCcccccchhh
Q 003753 530 EFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNT-NICELPIGIKSCTHLRTLLLDGTENLKAIPVGML 608 (798)
Q Consensus 530 ~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~-~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i 608 (798)
.++.. +..+++|++|+|++|..++.+|. ++.+++|++|+|++| .+..+|..++++++|+.|++++|..+..+|.+ +
T Consensus 625 ~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i 701 (1153)
T PLN03210 625 KLWDG-VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I 701 (1153)
T ss_pred ccccc-cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C
Confidence 77666 56777778888877655666664 677777888888776 56677777777888888888877777777765 3
Q ss_pred cCCCCCccccccCCCCCC-cc-CCCCC--CCcccccHHHh---ccCCCCCeeEEEEecccch----hhhhh-hhhhcccc
Q 003753 609 SSLLSLRVFSWVPTRYAG-FN-YGSSV--PGVTVLLLEEL---ESLKHLQEISVIILTIDSL----NKLKS-SLKLQSCI 676 (798)
Q Consensus 609 ~~L~~L~~L~l~~~~~~~-~~-~~~~~--~~~~~~~~~~L---~~l~~L~~L~l~~~~~~~~----~~l~~-~~~~~~~L 676 (798)
++++|++|++++|.... +. ....+ -......+..+ ..+++|+.|.+.......+ ..+.. ....+++|
T Consensus 702 -~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred -CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccc
Confidence 67778888777765331 00 00000 00000011111 1233444444332111000 00000 01123466
Q ss_pred eeeee-------ccCc--hhhhccCceEEeecc-CCCCCCcccCCCCccEEEeecCCchhhhhcc----------ccccC
Q 003753 677 RRLVM-------GLPE--AIFSQDLQDLSIINC-SIKDLTCIVYIPRLRFLFAKDCPSLEEIIAS----------DLRFE 736 (798)
Q Consensus 677 ~~L~l-------~lp~--~~lp~~L~~L~L~~~-~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~----------~~~~~ 736 (798)
+.|.+ .+|. ..+ ++|+.|+|++| ++..+|....+++|+.|++++|..+..++.. ....+
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L-~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~ 859 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNL-HKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE 859 (1153)
T ss_pred hheeCCCCCCccccChhhhCC-CCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCc
Confidence 66666 2454 566 78888999888 7777776557888899999888877655321 11112
Q ss_pred CCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccCCCCCCCCCC
Q 003753 737 PSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCPSLRKLPLS 789 (798)
Q Consensus 737 ~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~lp~~ 789 (798)
..+..+..+++|+.|+|++|++++.++.....+++|+.|++++|++|+.+++.
T Consensus 860 ~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~ 912 (1153)
T PLN03210 860 EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWN 912 (1153)
T ss_pred cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCC
Confidence 34456678999999999999999999988888999999999999999887763
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=6.5e-45 Score=381.67 Aligned_cols=279 Identities=30% Similarity=0.523 Sum_probs=229.8
Q ss_pred hhHHHHHHHHHhhc--CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCC
Q 003753 135 IESRLSEVWRYIED--DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPD 212 (798)
Q Consensus 135 r~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 212 (798)
||.++++|.++|.+ ++.++|+|+||||+||||||++++++.. ++++|+.++|+.++...+..+++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~-~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLR-IKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHH-HCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccc-ccccccccccccccccccccccccccccccccccc
Confidence 78999999999987 7899999999999999999999999863 58999999999999999999999999999988752
Q ss_pred CCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcccccccCCC---CCCCcEEEEeCCchHHhhhcCC-CcceeccCCC
Q 003753 213 GDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIELSEAGVP---VQNASKIVFTTIFEEVCSSMSV-DWRFKVDYLP 288 (798)
Q Consensus 213 ~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~~p---~~~gs~iivTTR~~~v~~~~~~-~~~~~l~~L~ 288 (798)
.. ....+.++....+.+.|+++++||||||||+...|..+..+ ...|++||||||+..++..++. ...|++++|+
T Consensus 80 ~~-~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 80 SI-SDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp TS-SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred cc-ccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 11 14567788999999999999999999999999888666433 5678999999999999876654 6789999999
Q ss_pred hHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHHHhcCCCChhHHHHHHHHHhcCCCCCCCcccchhh
Q 003753 289 QEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRYPSGFESIGTHVFP 368 (798)
Q Consensus 289 ~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~ 368 (798)
++||++||++.++......++.+.+.+++|+++|+|+||||+++|++|+.+.+..+|+.+++++.....+..+....+..
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999987653334556778999999999999999999999976667889999999988876554445568999
Q ss_pred hhhhhhcCCCchhHhHHHHhhcCCCCCceecHHHHHHHHHhcCCCcCC
Q 003753 369 LLKFSYDRLTSETHKTCFLYGSLFPRNQIIMKDELIELWIGEGLLRDS 416 (798)
Q Consensus 369 ~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~ 416 (798)
++.+||+.||++ +|.||+|||+||+++.|+++.++++|+++||+...
T Consensus 239 ~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 239 ALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 999999999996 99999999999999999999999999999999864
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=7.5e-24 Score=221.26 Aligned_cols=295 Identities=20% Similarity=0.251 Sum_probs=208.3
Q ss_pred EEEEecCCcccchhhh-hchhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccc--cccHHHHhcCCceeEEeCCC
Q 003753 473 ILVFQETDKSIKEQET-ASWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIK--EFENKFFKSMYALRVLDSSQ 549 (798)
Q Consensus 473 ~~~~~~~~~~~~~~~~-~~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~--~l~~~~~~~l~~Lr~L~L~~ 549 (798)
.|+..+..+...+|.. ....++.||++.+| .+.++...++.++.||++++..|+++ .+|+. +-.|..|.+||||+
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSH 112 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecch
Confidence 5666666666666653 34568999999999 88888878899999999999999765 68888 66799999999999
Q ss_pred CcccccccccccCCCCCCEEEcCCCCCcccCcc-ccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCcc
Q 003753 550 NAKLSKLHVGEGELIDLQYLNLSNTNICELPIG-IKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFN 628 (798)
Q Consensus 550 ~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 628 (798)
| .+++.|..+..-+++-.|+||+|+|.++|.. +-+|+.|-.|||++|+ +..+|+. +..|.+|++|.+++|...
T Consensus 113 N-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NPL~--- 186 (1255)
T KOG0444|consen 113 N-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNPLN--- 186 (1255)
T ss_pred h-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCChhh---
Confidence 9 9999999999999999999999999999865 4689999999999998 9999998 899999999999998764
Q ss_pred CCCCCCCcccccHHHhccCCCCCeeEEEEecccchhhhhhhhhhcccceeeee---ccCc--------------------
Q 003753 629 YGSSVPGVTVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM---GLPE-------------------- 685 (798)
Q Consensus 629 ~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l---~lp~-------------------- 685 (798)
...+..|+.+++|+.|+++... ..+..++.+..-+.+|+.+++ ++|.
T Consensus 187 ---------hfQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 187 ---------HFQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred ---------HHHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc
Confidence 3445556666666666665332 122223333333334444444 1211
Q ss_pred --------hhhhccCceEEeeccCCCCCC-cccCCCCccEEEeecCCc-hhhhhc-------------cccccCCCCccc
Q 003753 686 --------AIFSQDLQDLSIINCSIKDLT-CIVYIPRLRFLFAKDCPS-LEEIIA-------------SDLRFEPSEENL 742 (798)
Q Consensus 686 --------~~lp~~L~~L~L~~~~l~~l~-~l~~l~~L~~L~L~~~~~-l~~l~~-------------~~~~~~~~~~~~ 742 (798)
... .+|++|+++.|+++.+| .+.++++|+.|.+.+|.. .+.+++ .....+-.+..+
T Consensus 257 iteL~~~~~~W-~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEgl 335 (1255)
T KOG0444|consen 257 ITELNMTEGEW-ENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGL 335 (1255)
T ss_pred eeeeeccHHHH-hhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhh
Confidence 223 45555555555555554 355566666555544321 111111 111122344566
Q ss_pred ccccccceeecCCccchhhcccCCCCCCCcceeeeccCCCCCCCC
Q 003753 743 SMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCPSLRKLP 787 (798)
Q Consensus 743 ~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~lp 787 (798)
..|++|+.|.|+. +.|-.+|....-+|.|+.|++.++|+|..-|
T Consensus 336 cRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 7788888888875 6788888888888999999999999987544
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=2.8e-22 Score=209.55 Aligned_cols=262 Identities=21% Similarity=0.226 Sum_probs=180.9
Q ss_pred hhchhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCC
Q 003753 488 TASWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQ 567 (798)
Q Consensus 488 ~~~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~ 567 (798)
....+.+..|.++.| ++.+.|..+...+++-+|+|++|++..||...|-++..|-+||||+| .+..+|+.+..|.+|+
T Consensus 99 iF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred hcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhh
Confidence 344568889999999 99999988888999999999999999999999999999999999999 9999999999999999
Q ss_pred EEEcCCCCCccc-CccccCCCcccEEeCCCCC-CcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhc
Q 003753 568 YLNLSNTNICEL-PIGIKSCTHLRTLLLDGTE-NLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELE 645 (798)
Q Consensus 568 ~L~Ls~~~i~~l-p~~i~~l~~L~~L~l~~~~-~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 645 (798)
+|+|++|.+..+ -..+-.+++|+.|.++++. .+..+|.+ +..|.||+.++++.|+.. ..++.+-
T Consensus 177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp-------------~vPecly 242 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLP-------------IVPECLY 242 (1255)
T ss_pred hhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCC-------------cchHHHh
Confidence 999999955322 0122256777778887764 25667776 778888888888877643 3556666
Q ss_pred cCCCCCeeEEEEecccchhh--------------------hhhhhhhcccceeeee--------ccCc--hhhhccCceE
Q 003753 646 SLKHLQEISVIILTIDSLNK--------------------LKSSLKLQSCIRRLVM--------GLPE--AIFSQDLQDL 695 (798)
Q Consensus 646 ~l~~L~~L~l~~~~~~~~~~--------------------l~~~~~~~~~L~~L~l--------~lp~--~~lp~~L~~L 695 (798)
++++|+.|+++.+..+.+.. ++...-.++.|+.|.+ .+|+ +.+ .+|+.+
T Consensus 243 ~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL-~~Levf 321 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL-IQLEVF 321 (1255)
T ss_pred hhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhh-hhhHHH
Confidence 77777777776655443321 1111111222222222 2333 344 555555
Q ss_pred EeeccCCCCCC-cccCCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcccCCCCCCCcce
Q 003753 696 SIINCSIKDLT-CIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLER 774 (798)
Q Consensus 696 ~L~~~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~ 774 (798)
...+|.+.-+| .++.++.|+.|.|+.|.. -. ++..+.-+|-|+.|++..+++|.--|....+-.+|+.
T Consensus 322 ~aanN~LElVPEglcRC~kL~kL~L~~NrL-iT----------LPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lef 390 (1255)
T KOG0444|consen 322 HAANNKLELVPEGLCRCVKLQKLKLDHNRL-IT----------LPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEF 390 (1255)
T ss_pred HhhccccccCchhhhhhHHHHHhcccccce-ee----------chhhhhhcCCcceeeccCCcCccCCCCcchhhhccee
Confidence 66666555444 356666666666665333 22 3457778999999999999999866654433344544
Q ss_pred eee
Q 003753 775 IYV 777 (798)
Q Consensus 775 L~l 777 (798)
-+|
T Consensus 391 YNI 393 (1255)
T KOG0444|consen 391 YNI 393 (1255)
T ss_pred eec
Confidence 333
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=2.3e-19 Score=220.13 Aligned_cols=239 Identities=21% Similarity=0.236 Sum_probs=117.5
Q ss_pred CCCcceeeeecccccc-cccHHHHhcCCceeEEeCCCCcccc-cccccccCCCCCCEEEcCCCCCc-ccCccccCCCccc
Q 003753 514 CSPRLLTLLVRYTMIK-EFENKFFKSMYALRVLDSSQNAKLS-KLHVGEGELIDLQYLNLSNTNIC-ELPIGIKSCTHLR 590 (798)
Q Consensus 514 ~~~~L~~L~l~~~~~~-~l~~~~~~~l~~Lr~L~L~~~~~i~-~lp~~i~~L~~L~~L~Ls~~~i~-~lp~~i~~l~~L~ 590 (798)
.+++|++|++++|.+. .+|.. ++++++|++|+|++| .+. .+|..++++++|++|++++|.+. .+|..++++++|+
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred ccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 3445555555555443 22322 555555555555555 332 34555555555555555555443 3355555555555
Q ss_pred EEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecccchhhhhhhh
Q 003753 591 TLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDSLNKLKSSL 670 (798)
Q Consensus 591 ~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~ 670 (798)
+|++++|.....+|.. ++++++|++|++++|.+. +.....+.++++|+.|+++.+.... ..+...
T Consensus 216 ~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~------------~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l 280 (968)
T PLN00113 216 WIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLT------------GPIPSSLGNLKNLQYLFLYQNKLSG--PIPPSI 280 (968)
T ss_pred EEECcCCccCCcCChh-HhcCCCCCEEECcCceec------------cccChhHhCCCCCCEEECcCCeeec--cCchhH
Confidence 5555555422344443 555555555555554432 2233445555566666554433221 112222
Q ss_pred hhcccceeeee-------ccCc--hhhhccCceEEeeccCCCC--CCcccCCCCccEEEeecCCchhhhhccccccCCCC
Q 003753 671 KLQSCIRRLVM-------GLPE--AIFSQDLQDLSIINCSIKD--LTCIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSE 739 (798)
Q Consensus 671 ~~~~~L~~L~l-------~lp~--~~lp~~L~~L~L~~~~l~~--l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~ 739 (798)
..+.+|+.|++ .+|. ..+ ++|+.|++++|.+.. +..+..+++|+.|++++|.....+ +
T Consensus 281 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----------p 349 (968)
T PLN00113 281 FSLQKLISLDLSDNSLSGEIPELVIQL-QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI----------P 349 (968)
T ss_pred hhccCcCEEECcCCeeccCCChhHcCC-CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC----------C
Confidence 22334555544 1222 233 456666666654332 123555666666666654432222 2
Q ss_pred cccccccccceeecCCccchhhcccCCCCCCCcceeeeccC
Q 003753 740 ENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGC 780 (798)
Q Consensus 740 ~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c 780 (798)
..++.+++|+.|+++++.....++.....+++|+.|++++|
T Consensus 350 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 390 (968)
T PLN00113 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390 (968)
T ss_pred hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC
Confidence 34556677777777765444455555555667777776543
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=4.3e-19 Score=217.81 Aligned_cols=268 Identities=17% Similarity=0.174 Sum_probs=161.7
Q ss_pred chhceeeEEeecCCCCC-CCCCCCC-CCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccc-cccccccCCCCC
Q 003753 490 SWKEAVRVSLWRSPSID-SLSPTPP-CSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLS-KLHVGEGELIDL 566 (798)
Q Consensus 490 ~~~~l~~lsl~~~~~~~-~l~~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~-~lp~~i~~L~~L 566 (798)
..+.++.|.+.+| .+. .+|..+. .+++|++|++++|.+....+ .+.+++|++|+|++| .+. .+|..++++++|
T Consensus 91 ~l~~L~~L~Ls~n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p--~~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 91 RLPYIQTINLSNN-QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP--RGSIPNLETLDLSNN-MLSGEIPNDIGSFSSL 166 (968)
T ss_pred CCCCCCEEECCCC-ccCCcCChHHhccCCCCCEEECcCCccccccC--ccccCCCCEEECcCC-cccccCChHHhcCCCC
Confidence 3445556666555 443 4443332 55566666666555442211 134556666666666 444 456666666666
Q ss_pred CEEEcCCCCCc-ccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhc
Q 003753 567 QYLNLSNTNIC-ELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELE 645 (798)
Q Consensus 567 ~~L~Ls~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 645 (798)
++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+. ......+.
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~------------~~~p~~l~ 233 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLS------------GEIPYEIG 233 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccC------------CcCChhHh
Confidence 66666666554 45666666666666666666533445554 666666666666665543 33455677
Q ss_pred cCCCCCeeEEEEecccchhhhhhhhhhcccceeeee-------ccCc--hhhhccCceEEeeccCCCC-CC-cccCCCCc
Q 003753 646 SLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM-------GLPE--AIFSQDLQDLSIINCSIKD-LT-CIVYIPRL 714 (798)
Q Consensus 646 ~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l-------~lp~--~~lp~~L~~L~L~~~~l~~-l~-~l~~l~~L 714 (798)
++++|+.|+++.+.... .++.....+++|+.|.+ .+|. ..+ ++|+.|++++|.+.. +| ++..+++|
T Consensus 234 ~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L 310 (968)
T PLN00113 234 GLTSLNHLDLVYNNLTG--PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL-QKLISLDLSDNSLSGEIPELVIQLQNL 310 (968)
T ss_pred cCCCCCEEECcCceecc--ccChhHhCCCCCCEEECcCCeeeccCchhHhhc-cCcCEEECcCCeeccCCChhHcCCCCC
Confidence 77788888776554321 23333344456777766 2333 445 678888888885542 33 56778888
Q ss_pred cEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccCCCCCCCC
Q 003753 715 RFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCPSLRKLP 787 (798)
Q Consensus 715 ~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~lp 787 (798)
+.|++++|.....+ +..+..+++|+.|++++|.....++.....+++|+.|++++|.--..+|
T Consensus 311 ~~L~l~~n~~~~~~----------~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 311 EILHLFSNNFTGKI----------PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred cEEECCCCccCCcC----------ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 88888776543332 2356778999999999876655677777778899999998764333344
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=2.1e-20 Score=194.77 Aligned_cols=264 Identities=19% Similarity=0.234 Sum_probs=159.5
Q ss_pred hhceeeEEeecCCCCCCCCCC-CCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccc-cccCCCCCCE
Q 003753 491 WKEAVRVSLWRSPSIDSLSPT-PPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHV-GEGELIDLQY 568 (798)
Q Consensus 491 ~~~l~~lsl~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~ 568 (798)
.+.+|.++++.| .|.++|.. ++.-.+++.|+|++|.++.+..+.|.++.+|-.|.|+.| .++.+|. .+.+|++|+.
T Consensus 148 l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 148 LPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLES 225 (873)
T ss_pred Hhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhh
Confidence 345666667666 66666522 244456777777777777666666777777777777777 6777653 4445777777
Q ss_pred EEcCCCCCccc-CccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccC
Q 003753 569 LNLSNTNICEL-PIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESL 647 (798)
Q Consensus 569 L~Ls~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l 647 (798)
|+|..|.|... -..|.+|.+|+.|.+..|. +..+..++|..|.++++|++..|++. ...-+.+-+|
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~------------~vn~g~lfgL 292 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQ------------AVNEGWLFGL 292 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcC-cccccCcceeeecccceeecccchhh------------hhhccccccc
Confidence 77777765544 2355666666666666665 66666666666666666666666553 1222334556
Q ss_pred CCCCeeEEEEecccchhhhhhhhhhcccceeeee------ccCc---hhhhccCceEEeeccCCCCCC--cccCCCCccE
Q 003753 648 KHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM------GLPE---AIFSQDLQDLSIINCSIKDLT--CIVYIPRLRF 716 (798)
Q Consensus 648 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~lp~---~~lp~~L~~L~L~~~~l~~l~--~l~~l~~L~~ 716 (798)
+.|+.|+++.+....+.. ..-.+.+.|+.|+| .+++ ..+ ..|++|+|+.|++..+. .|..+++|+.
T Consensus 293 t~L~~L~lS~NaI~rih~--d~WsftqkL~~LdLs~N~i~~l~~~sf~~L-~~Le~LnLs~Nsi~~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHI--DSWSFTQKLKELDLSSNRITRLDEGSFRVL-SQLEELNLSHNSIDHLAEGAFVGLSSLHK 369 (873)
T ss_pred chhhhhccchhhhheeec--chhhhcccceeEeccccccccCChhHHHHH-HHhhhhcccccchHHHHhhHHHHhhhhhh
Confidence 666666666554433321 11222335555555 2333 334 56777777777666654 3556777777
Q ss_pred EEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhccc-CCCCCCCcceeeeccC
Q 003753 717 LFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICH-KAMAFPSLERIYVHGC 780 (798)
Q Consensus 717 L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~-~~~~~~~L~~L~l~~c 780 (798)
|+|+.| .+...+. .....+.++|+|+.|.|.+ ++++.|+. .+..+++|+.|++.++
T Consensus 370 LdLr~N-~ls~~IE------Daa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 370 LDLRSN-ELSWCIE------DAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred hcCcCC-eEEEEEe------cchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCC
Confidence 777764 3333322 1223556688888888887 67777776 3445778888887765
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=1.3e-19 Score=188.83 Aligned_cols=281 Identities=19% Similarity=0.234 Sum_probs=182.5
Q ss_pred chhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccc-cccCCCCCCE
Q 003753 490 SWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHV-GEGELIDLQY 568 (798)
Q Consensus 490 ~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~ 568 (798)
..++++.+++..| .++.+|.......+|+.|+|.+|.+..+....++.++.||.||||.| .|+++|. ++..=.++++
T Consensus 100 nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 100 NLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKK 177 (873)
T ss_pred cCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceE
Confidence 3457777788777 77788854455666888888888887777777778888888888888 7887753 4556677888
Q ss_pred EEcCCCCCccc-CccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCc-----------
Q 003753 569 LNLSNTNICEL-PIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGV----------- 636 (798)
Q Consensus 569 L~Ls~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~----------- 636 (798)
|+|++|.|+.+ -..|..+.+|.+|.|+.|+ ++.+|...|.+|++|+.|++..|.+.-.+ +..+.+.
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive-~ltFqgL~Sl~nlklqrN 255 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVE-GLTFQGLPSLQNLKLQRN 255 (873)
T ss_pred EeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeeh-hhhhcCchhhhhhhhhhc
Confidence 88888888777 3467777788888888886 78888777777888888888777654100 0000000
Q ss_pred --ccccHHHhccCCCCCeeEEEEecccchhhhhhhhhhcccceeeeec--------cCchhhhccCceEEeeccCCCCCC
Q 003753 637 --TVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVMG--------LPEAIFSQDLQDLSIINCSIKDLT 706 (798)
Q Consensus 637 --~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~--------lp~~~lp~~L~~L~L~~~~l~~l~ 706 (798)
....-..+-.|.+++.|++..+....+..-. ...+..|+.|++. .....|.++|++|+|++|.++.++
T Consensus 256 ~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~--lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~ 333 (873)
T KOG4194|consen 256 DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW--LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD 333 (873)
T ss_pred CcccccCcceeeecccceeecccchhhhhhccc--ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC
Confidence 0001111223444555555444333322211 1123355555551 112444478999999998888776
Q ss_pred --cccCCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhccc----CCCCCCCcceeeeccC
Q 003753 707 --CIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICH----KAMAFPSLERIYVHGC 780 (798)
Q Consensus 707 --~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~----~~~~~~~L~~L~l~~c 780 (798)
.+..|..|+.|+|+. +.+..+-. ..+.++.+|+.|+|++ +.+..... ....+|+|++|.+.++
T Consensus 334 ~~sf~~L~~Le~LnLs~-Nsi~~l~e---------~af~~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 334 EGSFRVLSQLEELNLSH-NSIDHLAE---------GAFVGLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTGN 402 (873)
T ss_pred hhHHHHHHHhhhhcccc-cchHHHHh---------hHHHHhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecCc
Confidence 367788899999988 45666633 4677899999999998 44443222 2335899999999773
Q ss_pred CCCCCCCC
Q 003753 781 PSLRKLPL 788 (798)
Q Consensus 781 ~~L~~lp~ 788 (798)
+|+++|-
T Consensus 403 -qlk~I~k 409 (873)
T KOG4194|consen 403 -QLKSIPK 409 (873)
T ss_pred -eeeecch
Confidence 5666554
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=5.5e-20 Score=183.67 Aligned_cols=287 Identities=19% Similarity=0.176 Sum_probs=181.7
Q ss_pred hhhchhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCC
Q 003753 487 ETASWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDL 566 (798)
Q Consensus 487 ~~~~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L 566 (798)
..+..+++..+.++.| .+..+| .+.+|..|..|++..|.+..+|....+++.+|.+|||..| +++++|..++.|.+|
T Consensus 201 ~lg~l~~L~~LyL~~N-ki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL 277 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRN-KIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSL 277 (565)
T ss_pred hhcchhhhHHHHhhhc-ccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhh
Confidence 3445667777777777 777777 7778888888888888777788777777888888888888 788888888888888
Q ss_pred CEEEcCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCC--CCcccccc--CCCCCCccCC-CCCCCcccccH
Q 003753 567 QYLNLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLL--SLRVFSWV--PTRYAGFNYG-SSVPGVTVLLL 641 (798)
Q Consensus 567 ~~L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~--~L~~L~l~--~~~~~~~~~~-~~~~~~~~~~~ 641 (798)
.+||+|+|.|+.+|.+++++ +|+.|-+.||. +..+..+++++=+ =|++|.-. ....+...-+ ...++......
T Consensus 278 ~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~ 355 (565)
T KOG0472|consen 278 ERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESF 355 (565)
T ss_pred hhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcc
Confidence 88888888888888888887 78888888876 6666555332211 12333210 0011100000 00111112223
Q ss_pred HHhccCCCCCeeEEEEecccchhhhhhhhhhcccceeeee-----------------------------ccCc---hhhh
Q 003753 642 EELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM-----------------------------GLPE---AIFS 689 (798)
Q Consensus 642 ~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l-----------------------------~lp~---~~lp 689 (798)
.....+.+.+.|+++....+.++.-........-.+..++ .+++ ..+
T Consensus 356 ~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l- 434 (565)
T KOG0472|consen 356 PDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQL- 434 (565)
T ss_pred cchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhh-
Confidence 3334455666666654443332211100000000111111 2222 667
Q ss_pred ccCceEEeeccCCCCCC-cccCCCCccEEEeecCCchhhhhc-------------c-ccccCCCCcccccccccceeecC
Q 003753 690 QDLQDLSIINCSIKDLT-CIVYIPRLRFLFAKDCPSLEEIIA-------------S-DLRFEPSEENLSMFLHLRQAYFF 754 (798)
Q Consensus 690 ~~L~~L~L~~~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~-------------~-~~~~~~~~~~~~~~~~L~~L~L~ 754 (798)
++|..|+|++|-+.++| .++.+..|+.|+|+.| ....++. . ...+...+..+.++.+|..|+|.
T Consensus 435 ~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~ 513 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQ 513 (565)
T ss_pred hcceeeecccchhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccC
Confidence 89999999999777777 4788888999999985 3444432 1 11122223347889999999999
Q ss_pred CccchhhcccCCCCCCCcceeeeccCC
Q 003753 755 KLPNLKNICHKAMAFPSLERIYVHGCP 781 (798)
Q Consensus 755 ~~~~l~~i~~~~~~~~~L~~L~l~~c~ 781 (798)
+ +.+..+|...++|.+|+.|++.+.|
T Consensus 514 n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 514 N-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred C-CchhhCChhhccccceeEEEecCCc
Confidence 8 7899999999999999999999976
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.75 E-value=1.3e-17 Score=204.87 Aligned_cols=281 Identities=21% Similarity=0.253 Sum_probs=197.9
Q ss_pred cchhhhhchhceeeEEeecCCCCCCCCCCCCCCCcceeeeeccc-ccccccHHHHhcCCceeEEeCCCCccccccccccc
Q 003753 483 IKEQETASWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYT-MIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEG 561 (798)
Q Consensus 483 ~~~~~~~~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~ 561 (798)
...|....+.+++.|.+.++ .+..++..+..+++|+.|++++| .+..+|. ++.+++|+.|+|++|..+..+|.+++
T Consensus 602 ~~lP~~f~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~ 678 (1153)
T PLN03210 602 RCMPSNFRPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQ 678 (1153)
T ss_pred CCCCCcCCccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhh
Confidence 34454445678999999999 89999878889999999999987 5677775 78899999999999877889999999
Q ss_pred CCCCCCEEEcCCC-CCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCC--------
Q 003753 562 ELIDLQYLNLSNT-NICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSS-------- 632 (798)
Q Consensus 562 ~L~~L~~L~Ls~~-~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~-------- 632 (798)
++++|++|++++| .+..+|..+ ++++|++|++++|..+..+|.. .++|+.|++++|.+..+.....
T Consensus 679 ~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~ 753 (1153)
T PLN03210 679 YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEEFPSNLRLENLDELI 753 (1153)
T ss_pred ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcccccccccccccccccc
Confidence 9999999999998 788888766 7899999999998777666642 3456666666655432110000
Q ss_pred -------------------------------CCCc--ccccHHHhccCCCCCeeEEEEecccchhhhhhhhhhcccceee
Q 003753 633 -------------------------------VPGV--TVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRL 679 (798)
Q Consensus 633 -------------------------------~~~~--~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 679 (798)
+.+. ....+..++++++|+.|++..+. .+..++... .+++|+.|
T Consensus 754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~--~L~~LP~~~-~L~sL~~L 830 (1153)
T PLN03210 754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI--NLETLPTGI-NLESLESL 830 (1153)
T ss_pred ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC--CcCeeCCCC-CccccCEE
Confidence 0000 01123345666777777765332 222333222 23466666
Q ss_pred eec----cCc-hhhhccCceEEeeccCCCCCC-cccCCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeec
Q 003753 680 VMG----LPE-AIFSQDLQDLSIINCSIKDLT-CIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYF 753 (798)
Q Consensus 680 ~l~----lp~-~~lp~~L~~L~L~~~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L 753 (798)
.+. +.. ...+++|+.|+|++|.++.+| ++..+++|+.|+|++|+.++.++. ....+++|+.|++
T Consensus 831 ~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~----------~~~~L~~L~~L~l 900 (1153)
T PLN03210 831 DLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL----------NISKLKHLETVDF 900 (1153)
T ss_pred ECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc----------ccccccCCCeeec
Confidence 661 110 112367888888888887776 588999999999999999988743 5668899999999
Q ss_pred CCccchhhcccCC-------------CCCCCcceeeeccCCCCC
Q 003753 754 FKLPNLKNICHKA-------------MAFPSLERIYVHGCPSLR 784 (798)
Q Consensus 754 ~~~~~l~~i~~~~-------------~~~~~L~~L~l~~c~~L~ 784 (798)
++|+.|..++... ..+|+...+.+.+|.+|.
T Consensus 901 ~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 901 SDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred CCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 9999998654321 234555667788888875
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.67 E-value=3.3e-19 Score=178.17 Aligned_cols=116 Identities=24% Similarity=0.293 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCccc
Q 003753 504 SIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGI 583 (798)
Q Consensus 504 ~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i 583 (798)
.+..+.+.+.++..|.+|.+++|.+..+|+. ++.+..+..|+.++| ++..+|+.++.+.+|..|+.++|.+.++|+++
T Consensus 56 ~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~a-ig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i 133 (565)
T KOG0472|consen 56 DLEVLREDLKNLACLTVLNVHDNKLSQLPAA-IGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNELKELPDSI 133 (565)
T ss_pred chhhccHhhhcccceeEEEeccchhhhCCHH-HHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccceeecCchH
Confidence 3444333444444444555554444444444 444444444444444 44444444444444444554444444444444
Q ss_pred cCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCC
Q 003753 584 KSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTR 623 (798)
Q Consensus 584 ~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 623 (798)
+.+..|..|+..+|. +..+|.+ +..+.+|..|++.+|.
T Consensus 134 ~~~~~l~dl~~~~N~-i~slp~~-~~~~~~l~~l~~~~n~ 171 (565)
T KOG0472|consen 134 GRLLDLEDLDATNNQ-ISSLPED-MVNLSKLSKLDLEGNK 171 (565)
T ss_pred HHHhhhhhhhccccc-cccCchH-HHHHHHHHHhhccccc
Confidence 444444444444443 4444444 4444444444444443
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=1.8e-15 Score=172.45 Aligned_cols=242 Identities=19% Similarity=0.182 Sum_probs=165.1
Q ss_pred cCCcccchhhhhchhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccc
Q 003753 478 ETDKSIKEQETASWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLH 557 (798)
Q Consensus 478 ~~~~~~~~~~~~~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp 557 (798)
.......+|... +.+++.|.+.+| .++.+|. ..++|++|++++|.++.+|.. .++|+.|++++| .++.+|
T Consensus 209 s~~~LtsLP~~l-~~~L~~L~L~~N-~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N-~L~~Lp 278 (788)
T PRK15387 209 GESGLTTLPDCL-PAHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPVL----PPGLLELSIFSN-PLTHLP 278 (788)
T ss_pred CCCCCCcCCcch-hcCCCEEEccCC-cCCCCCC---CCCCCcEEEecCCccCcccCc----ccccceeeccCC-chhhhh
Confidence 334455555432 347888999988 8888883 257899999999988888753 467888899888 788887
Q ss_pred ccccCCCCCCEEEcCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcc
Q 003753 558 VGEGELIDLQYLNLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVT 637 (798)
Q Consensus 558 ~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 637 (798)
... .+|+.|++++|+++.+|.. +++|+.|++++|. +..+|.. ..+|+.|++++|.+..
T Consensus 279 ~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l----p~~L~~L~Ls~N~L~~----------- 336 (788)
T PRK15387 279 ALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQLTS----------- 336 (788)
T ss_pred hch---hhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC----cccccccccccCcccc-----------
Confidence 633 5677888888888888753 4678888888886 7777752 2356777777776541
Q ss_pred cccHHHhccCCCCCeeEEEEecccchhhhhhhhhhcccceeeee------ccCchhhhccCceEEeeccCCCCCCcccCC
Q 003753 638 VLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM------GLPEAIFSQDLQDLSIINCSIKDLTCIVYI 711 (798)
Q Consensus 638 ~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~lp~~~lp~~L~~L~L~~~~l~~l~~l~~l 711 (798)
+..+ ..+|+.|+++.+....++.++ .+|+.|.+ .+|. +|++|+.|++++|.++.+|.. .
T Consensus 337 ---LP~l--p~~Lq~LdLS~N~Ls~LP~lp------~~L~~L~Ls~N~L~~LP~--l~~~L~~LdLs~N~Lt~LP~l--~ 401 (788)
T PRK15387 337 ---LPTL--PSGLQELSVSDNQLASLPTLP------SELYKLWAYNNRLTSLPA--LPSGLKELIVSGNRLTSLPVL--P 401 (788)
T ss_pred ---cccc--ccccceEecCCCccCCCCCCC------cccceehhhccccccCcc--cccccceEEecCCcccCCCCc--c
Confidence 1111 146777887766655544332 24444444 2332 236788899988877777653 3
Q ss_pred CCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccCC
Q 003753 712 PRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCP 781 (798)
Q Consensus 712 ~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~ 781 (798)
++|+.|++++|. +..++. .+.+|+.|++++ +.++.+|.....+++|+.|++++++
T Consensus 402 s~L~~LdLS~N~-LssIP~-------------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 402 SELKELMVSGNR-LTSLPM-------------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cCCCEEEccCCc-CCCCCc-------------chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 678888888854 454421 234678888887 5677888777778888888888864
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=7.6e-18 Score=149.23 Aligned_cols=161 Identities=22% Similarity=0.306 Sum_probs=142.8
Q ss_pred cchhhhhchhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccC
Q 003753 483 IKEQETASWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGE 562 (798)
Q Consensus 483 ~~~~~~~~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~ 562 (798)
.+++.....+.++++.+++| .+..+|+.+..+.+|++|++++|.++.+|.+ ++.+++||.|+++-| .+..+|..++.
T Consensus 24 ~~~~gLf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs 100 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGS 100 (264)
T ss_pred hhcccccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCC
Confidence 34455566678999999999 9999998999999999999999999999998 999999999999999 99999999999
Q ss_pred CCCCCEEEcCCCCCc--ccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCccccc
Q 003753 563 LIDLQYLNLSNTNIC--ELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLL 640 (798)
Q Consensus 563 L~~L~~L~Ls~~~i~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 640 (798)
++.|+.|||++|++. .+|..|..++.|+-|+++.|. ...+|++ +++|++||.|.+..|... ..
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll-------------~l 165 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL-------------SL 165 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh-------------hC
Confidence 999999999999775 689999999999999999997 8999998 999999999999988754 46
Q ss_pred HHHhccCCCCCeeEEEEeccc
Q 003753 641 LEELESLKHLQEISVIILTID 661 (798)
Q Consensus 641 ~~~L~~l~~L~~L~l~~~~~~ 661 (798)
+.+++.++.|+.|++.++...
T Consensus 166 pkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred cHHHHHHHHHHHHhcccceee
Confidence 788899999999999766543
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.57 E-value=7.6e-15 Score=168.52 Aligned_cols=224 Identities=19% Similarity=0.194 Sum_probs=140.2
Q ss_pred hceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEc
Q 003753 492 KEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNL 571 (798)
Q Consensus 492 ~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~L 571 (798)
+.++.|.+.+| .+..+|..+. ++|++|++++|.++.+|..+. .+|+.|+|++| .+..+|..+. .+|++|++
T Consensus 199 ~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP---DTIQEMELSIN-RITELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh---ccccEEECcCC-ccCcCChhHh--CCCCEEEC
Confidence 46778888888 7777775433 578888888888877776532 46788888888 7777777664 47888888
Q ss_pred CCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCC
Q 003753 572 SNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQ 651 (798)
Q Consensus 572 s~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 651 (798)
++|++..+|..+. .+|++|++++|. +..+|.. +. ++|+.|++++|.+... ...+ .++|+
T Consensus 270 s~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt~L-------------P~~l--~~sL~ 328 (754)
T PRK15370 270 FHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLTAL-------------PETL--PPGLK 328 (754)
T ss_pred cCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCccccC-------------Cccc--cccce
Confidence 8888887776554 478888888876 7777764 32 4677888877765410 1111 14666
Q ss_pred eeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCCcccCCCCccEEEeecCCchhhhhcc
Q 003753 652 EISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLTCIVYIPRLRFLFAKDCPSLEEIIAS 731 (798)
Q Consensus 652 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~ 731 (798)
.|.++.+....+ +. .+|++|+.|++++|+++.+|.- -.++|+.|+|++|. +..++.
T Consensus 329 ~L~Ls~N~Lt~L---P~------------------~l~~sL~~L~Ls~N~L~~LP~~-lp~~L~~LdLs~N~-Lt~LP~- 384 (754)
T PRK15370 329 TLEAGENALTSL---PA------------------SLPPELQVLDVSKNQITVLPET-LPPTITTLDVSRNA-LTNLPE- 384 (754)
T ss_pred eccccCCccccC---Ch------------------hhcCcccEEECCCCCCCcCChh-hcCCcCEEECCCCc-CCCCCH-
Confidence 666655443322 11 1226777777777766655531 13577777777753 444421
Q ss_pred ccccCCCCcccccccccceeecCCccchhhcccC----CCCCCCcceeeeccCC
Q 003753 732 DLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHK----AMAFPSLERIYVHGCP 781 (798)
Q Consensus 732 ~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~----~~~~~~L~~L~l~~c~ 781 (798)
.+ .+.|+.|++++ +++..+|.. ...+|++..|++.++|
T Consensus 385 ---------~l--~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 385 ---------NL--PAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred ---------hH--HHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 11 23577777776 345555432 2234666777776654
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.8e-16 Score=140.62 Aligned_cols=167 Identities=21% Similarity=0.225 Sum_probs=141.1
Q ss_pred CCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCccc
Q 003753 504 SIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGI 583 (798)
Q Consensus 504 ~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i 583 (798)
.+.++| .+.++.++..|.+++|.++.+|+. +..+.+|++|++++| +++++|.+|+.+++|+.|+++-|.+..+|.+|
T Consensus 22 sf~~~~-gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 22 SFEELP-GLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred cHhhcc-cccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCcccc
Confidence 445666 677888999999999999999999 999999999999999 99999999999999999999999999999999
Q ss_pred cCCCcccEEeCCCCCCc-ccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecccc
Q 003753 584 KSCTHLRTLLLDGTENL-KAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDS 662 (798)
Q Consensus 584 ~~l~~L~~L~l~~~~~l-~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~ 662 (798)
+.++.|+.||+.+|..- ..+|.. |-.++.|+-|+++.|.+. ..+.+.+++++|+.|.+..++.-.
T Consensus 99 gs~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dndfe-------------~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFE-------------ILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred CCCchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCcc-------------cCChhhhhhcceeEEeeccCchhh
Confidence 99999999999988622 347766 888999999999988753 567888999999999987655433
Q ss_pred hhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCC
Q 003753 663 LNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLT 706 (798)
Q Consensus 663 ~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~ 706 (798)
++.-. +.+ ..|++|++.+|.++.+|
T Consensus 165 lpkei------------------g~l-t~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 165 LPKEI------------------GDL-TRLRELHIQGNRLTVLP 189 (264)
T ss_pred CcHHH------------------HHH-HHHHHHhcccceeeecC
Confidence 33222 234 78899999999888766
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=9.2e-15 Score=167.86 Aligned_cols=228 Identities=17% Similarity=0.217 Sum_probs=170.6
Q ss_pred ceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcC
Q 003753 493 EAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLS 572 (798)
Q Consensus 493 ~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls 572 (798)
+...+.+.++ .+..+|..++ ++|+.|++++|.++.+|...+ .+|++|++++| .++.+|..+. .+|+.|+|+
T Consensus 179 ~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPACIP--EQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCC-CcCcCCcccc--cCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECc
Confidence 4567888887 8888885553 589999999999999998743 58999999999 9999998664 479999999
Q ss_pred CCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCe
Q 003753 573 NTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQE 652 (798)
Q Consensus 573 ~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 652 (798)
+|.+..+|..+. .+|+.|++++|. +..+|.. +. ++|++|++++|.+..+ ...+. ++|+.
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l~--~sL~~L~Ls~N~Lt~L-------------P~~lp--~sL~~ 308 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNK-ISCLPEN-LP--EELRYLSVYDNSIRTL-------------PAHLP--SGITH 308 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCc-cCccccc-cC--CCCcEEECCCCccccC-------------cccch--hhHHH
Confidence 999999998765 589999999887 8889976 43 5899999999876521 11111 35666
Q ss_pred eEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCCcccCCCCccEEEeecCCchhhhhccc
Q 003753 653 ISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLTCIVYIPRLRFLFAKDCPSLEEIIASD 732 (798)
Q Consensus 653 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~ 732 (798)
|+++.+....+ +. . +|++|+.|++++|.++.+|.- -.++|+.|+|++|+ +..++.
T Consensus 309 L~Ls~N~Lt~L---P~-----------------~-l~~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~-L~~LP~-- 363 (754)
T PRK15370 309 LNVQSNSLTAL---PE-----------------T-LPPGLKTLEAGENALTSLPAS-LPPELQVLDVSKNQ-ITVLPE-- 363 (754)
T ss_pred HHhcCCccccC---Cc-----------------c-ccccceeccccCCccccCChh-hcCcccEEECCCCC-CCcCCh--
Confidence 66665443322 11 1 127899999999988877641 13799999999964 454422
Q ss_pred cccCCCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccCCCCCCCCCC
Q 003753 733 LRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCPSLRKLPLS 789 (798)
Q Consensus 733 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~lp~~ 789 (798)
. ..++|+.|+|++| .+..+|... .++|+.|++++| +|..+|..
T Consensus 364 --------~--lp~~L~~LdLs~N-~Lt~LP~~l--~~sL~~LdLs~N-~L~~LP~s 406 (754)
T PRK15370 364 --------T--LPPTITTLDVSRN-ALTNLPENL--PAALQIMQASRN-NLVRLPES 406 (754)
T ss_pred --------h--hcCCcCEEECCCC-cCCCCCHhH--HHHHHHHhhccC-CcccCchh
Confidence 2 2468999999995 677777543 247999999986 78888754
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.53 E-value=1.4e-15 Score=167.82 Aligned_cols=167 Identities=17% Similarity=0.246 Sum_probs=118.0
Q ss_pred ceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcC
Q 003753 493 EAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLS 572 (798)
Q Consensus 493 ~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls 572 (798)
++++|....| .+..+- ..+...+|++++++.|.+..+| ++++.+.+|..|+..+| .+..+|..+...++|++|++.
T Consensus 220 ~l~~L~a~~n-~l~~~~-~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 220 SLTALYADHN-PLTTLD-VHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAA 295 (1081)
T ss_pred chheeeeccC-cceeec-cccccccceeeecchhhhhcch-HHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhh
Confidence 6777777777 554332 2344568888999999888888 66888999999999999 888888888888999999999
Q ss_pred CCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCC-CccccccCCCCCCcc-CCCC-----------CCCcccc
Q 003753 573 NTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLS-LRVFSWVPTRYAGFN-YGSS-----------VPGVTVL 639 (798)
Q Consensus 573 ~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~-L~~L~l~~~~~~~~~-~~~~-----------~~~~~~~ 639 (798)
+|.++.+|....+++.|++|+|..|. +..+|+..+..+.. |+.|+.+.+...... ++.. -...++.
T Consensus 296 ~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 296 YNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred hhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc
Confidence 99999898888888999999998887 88888764444433 555555554443210 0000 0011345
Q ss_pred cHHHhccCCCCCeeEEEEecccchh
Q 003753 640 LLEELESLKHLQEISVIILTIDSLN 664 (798)
Q Consensus 640 ~~~~L~~l~~L~~L~l~~~~~~~~~ 664 (798)
.+.-|.++.+|+.|+++.+....++
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~~fp 399 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLNSFP 399 (1081)
T ss_pred chhhhccccceeeeeecccccccCC
Confidence 5666777888888888777554443
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=4.8e-14 Score=160.83 Aligned_cols=234 Identities=22% Similarity=0.233 Sum_probs=169.9
Q ss_pred ceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcC
Q 003753 493 EAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLS 572 (798)
Q Consensus 493 ~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls 572 (798)
+-..|.+..+ .+..+|..+. ++|+.|.+.+|.++.+|.. +++|++|+|++| .++.+|.. .++|+.|+++
T Consensus 202 ~~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPAL----PPELRTLEVSGN-QLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCC-CCCcCCcchh--cCCCEEEccCCcCCCCCCC----CCCCcEEEecCC-ccCcccCc---ccccceeecc
Confidence 3456788888 8899996664 4899999999999999863 689999999999 99999864 4689999999
Q ss_pred CCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCe
Q 003753 573 NTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQE 652 (798)
Q Consensus 573 ~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 652 (798)
+|.+..+|.. ..+|+.|++++|. +..+|.. +++|+.|++++|.+... ..+ ..+|+.
T Consensus 271 ~N~L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~----p~~L~~LdLS~N~L~~L--------------p~l--p~~L~~ 326 (788)
T PRK15387 271 SNPLTHLPAL---PSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLASL--------------PAL--PSELCK 326 (788)
T ss_pred CCchhhhhhc---hhhcCEEECcCCc-ccccccc----ccccceeECCCCccccC--------------CCC--cccccc
Confidence 9999998863 3678899999997 8888863 57899999999877521 111 235667
Q ss_pred eEEEEecccchhhhhhhhhhcccceeeee------ccCchhhhccCceEEeeccCCCCCCcccCCCCccEEEeecCCchh
Q 003753 653 ISVIILTIDSLNKLKSSLKLQSCIRRLVM------GLPEAIFSQDLQDLSIINCSIKDLTCIVYIPRLRFLFAKDCPSLE 726 (798)
Q Consensus 653 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~lp~~~lp~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~l~ 726 (798)
|.++.+....++.++ .+|+.|++ .+|. +|++|+.|++++|.+..+|.+ .++|+.|+|++| .++
T Consensus 327 L~Ls~N~L~~LP~lp------~~Lq~LdLS~N~Ls~LP~--lp~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N-~Lt 395 (788)
T PRK15387 327 LWAYNNQLTSLPTLP------SGLQELSVSDNQLASLPT--LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGN-RLT 395 (788)
T ss_pred cccccCccccccccc------cccceEecCCCccCCCCC--CCcccceehhhccccccCccc--ccccceEEecCC-ccc
Confidence 777666555444322 36777776 2332 347788888888877776643 357888888875 444
Q ss_pred hhhccccccCCCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccCCCCCCCCCCC
Q 003753 727 EIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCPSLRKLPLSL 790 (798)
Q Consensus 727 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~lp~~~ 790 (798)
.++. ..++|+.|+++++ .+..+|.. +.+|+.|+++++ +|+.||...
T Consensus 396 ~LP~-------------l~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~N-qLt~LP~sl 441 (788)
T PRK15387 396 SLPV-------------LPSELKELMVSGN-RLTSLPML---PSGLLSLSVYRN-QLTRLPESL 441 (788)
T ss_pred CCCC-------------cccCCCEEEccCC-cCCCCCcc---hhhhhhhhhccC-cccccChHH
Confidence 4421 2468999999984 57777643 356778888774 567776543
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.48 E-value=5.3e-15 Score=163.22 Aligned_cols=267 Identities=20% Similarity=0.192 Sum_probs=165.1
Q ss_pred ceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcC
Q 003753 493 EAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLS 572 (798)
Q Consensus 493 ~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls 572 (798)
++.+|.+++| .+..+|..+..+++|+.|.++.|.+..+|.+ ..++++|++|.|.+| .+..+|.++..+++|++|++|
T Consensus 46 ~L~~l~lsnn-~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNN-QISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeecccc-ccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccc-hhhcCchhHHhhhcccccccc
Confidence 5778888888 8888887778888888888888888888866 788888888888888 888888888888888888888
Q ss_pred CCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCC-ccCC-------CCCCCcccccHHHh
Q 003753 573 NTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAG-FNYG-------SSVPGVTVLLLEEL 644 (798)
Q Consensus 573 ~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~-~~~~-------~~~~~~~~~~~~~L 644 (798)
+|.+..+|..+..++.+..+..++|..+..++.. + ++.+++..+.+.. +..+ ..+.. .......+
T Consensus 123 ~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~--~----ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~-N~~~~~dl 195 (1081)
T KOG0618|consen 123 FNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQT--S----IKKLDLRLNVLGGSFLIDIYNLTHQLDLRY-NEMEVLDL 195 (1081)
T ss_pred hhccCCCchhHHhhhHHHHHhhhcchhhhhhccc--c----chhhhhhhhhcccchhcchhhhheeeeccc-chhhhhhh
Confidence 8888888888888888888888777434444432 1 4444444433220 0000 00000 00112233
Q ss_pred ccCCCCCeeEEEEecccchhhhhhhhhhcccceeeeec-cC-----chhhhccCceEEeeccCCCCCC-cccCCCCccEE
Q 003753 645 ESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVMG-LP-----EAIFSQDLQDLSIINCSIKDLT-CIVYIPRLRFL 717 (798)
Q Consensus 645 ~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~-lp-----~~~lp~~L~~L~L~~~~l~~l~-~l~~l~~L~~L 717 (798)
.++.+|+.+....+....+..- -.+|+.|... .| ....|.+|++++++.++++.+| |++.+.+|+.|
T Consensus 196 s~~~~l~~l~c~rn~ls~l~~~------g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l 269 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELEIS------GPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEAL 269 (1081)
T ss_pred hhccchhhhhhhhcccceEEec------CcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEe
Confidence 3333443333322221111100 0122222220 00 0223589999999999777766 89999999999
Q ss_pred EeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccCCCCCCCCC
Q 003753 718 FAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCPSLRKLPL 788 (798)
Q Consensus 718 ~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~lp~ 788 (798)
++..|. +..++. .+....+|+.|.+.. +.++.++.....+.+|++|++..+ +|..+|.
T Consensus 270 ~~n~N~-l~~lp~----------ri~~~~~L~~l~~~~-nel~yip~~le~~~sL~tLdL~~N-~L~~lp~ 327 (1081)
T KOG0618|consen 270 NANHNR-LVALPL----------RISRITSLVSLSAAY-NELEYIPPFLEGLKSLRTLDLQSN-NLPSLPD 327 (1081)
T ss_pred cccchh-HHhhHH----------HHhhhhhHHHHHhhh-hhhhhCCCcccccceeeeeeehhc-cccccch
Confidence 998854 455432 344455666666665 356666665555666666666553 5555554
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.48 E-value=3e-15 Score=150.03 Aligned_cols=83 Identities=13% Similarity=0.180 Sum_probs=61.7
Q ss_pred hhhhccCceEEeeccCCCCCC--cccCCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcc
Q 003753 686 AIFSQDLQDLSIINCSIKDLT--CIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNIC 763 (798)
Q Consensus 686 ~~lp~~L~~L~L~~~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~ 763 (798)
..+ ++|++|+|++|.++.+. ||..+..|+.|.|.. +.++.+-. ..+.++..|+.|+|.+ ++++.+.
T Consensus 271 ~~L-~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~---------~~f~~ls~L~tL~L~~-N~it~~~ 338 (498)
T KOG4237|consen 271 KKL-PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR-NKLEFVSS---------GMFQGLSGLKTLSLYD-NQITTVA 338 (498)
T ss_pred hhc-ccceEeccCCCccchhhhhhhcchhhhhhhhcCc-chHHHHHH---------HhhhccccceeeeecC-CeeEEEe
Confidence 456 78999999999888764 788999999999988 56666632 3567888999999999 5565554
Q ss_pred c-CCCCCCCcceeeeccC
Q 003753 764 H-KAMAFPSLERIYVHGC 780 (798)
Q Consensus 764 ~-~~~~~~~L~~L~l~~c 780 (798)
+ .+....+|.+|.+-.+
T Consensus 339 ~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 339 PGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred cccccccceeeeeehccC
Confidence 3 3445667777777543
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.39 E-value=2.5e-11 Score=148.58 Aligned_cols=293 Identities=16% Similarity=0.173 Sum_probs=180.4
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCC-ccCHHHHHHHHHHHcCC
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAST-ELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~ 209 (798)
.+|-|+.-.+.+.+ ....+++.|+|++|.||||++.++.... . .++|+++.. +.+...+...++..++.
T Consensus 15 ~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~l~~ 84 (903)
T PRK04841 15 NTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAALQQ 84 (903)
T ss_pred ccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHHHHH
Confidence 57778765555432 1457899999999999999999987532 2 689999864 44566676777776642
Q ss_pred CCCCC---------ccccCCHHHHHHHHHHHhc--CCcEEEEEecccCcc-----cccccCCC-CCCCcEEEEeCCchHH
Q 003753 210 DPDGD---------KWKNRDDQGRAAEIFRRLS--NKKFALLLDDLRERI-----ELSEAGVP-VQNASKIVFTTIFEEV 272 (798)
Q Consensus 210 ~~~~~---------~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~-----~~~~~~~p-~~~gs~iivTTR~~~v 272 (798)
..... .....+.......+...+. +.+++|||||+.... ++....++ ...+.++|||||...-
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 85 ATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred hcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 21110 0011223334444444443 689999999997643 12222233 4567788899997421
Q ss_pred hh--hc-CCCcceecc----CCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHHHhcCCCChhHH
Q 003753 273 CS--SM-SVDWRFKVD----YLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGSAMASRRDPDNW 345 (798)
Q Consensus 273 ~~--~~-~~~~~~~l~----~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w 345 (798)
.. .+ .......+. +|+.+|+.++|....+... + .+...+|.+.|+|.|+++..++..+...... .
T Consensus 165 ~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~---~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~--~ 236 (903)
T PRK04841 165 LGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI---E---AAESSRLCDDVEGWATALQLIALSARQNNSS--L 236 (903)
T ss_pred CchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC---C---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc--h
Confidence 11 11 112234555 9999999999987765431 1 3457889999999999999998777543210 0
Q ss_pred HHHHHHHhcCCCCCCCcccchhhhhhh-hhcCCCchhHhHHHHhhcCCCCCceecHHHHHHHHHhcCCCcCCccHHHHHH
Q 003753 346 RYAIEELQRYPSGFESIGTHVFPLLKF-SYDRLTSETHKTCFLYGSLFPRNQIIMKDELIELWIGEGLLRDSHNIAVARR 424 (798)
Q Consensus 346 ~~~~~~l~~~~~~~~~~~~~i~~~l~~-sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~ 424 (798)
......+... ....+...+.- .++.||++ .+..+...|+++ .++.+ +.. .+.. .+
T Consensus 237 ~~~~~~~~~~------~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~---~~~~~-l~~-----~l~~--------~~ 292 (903)
T PRK04841 237 HDSARRLAGI------NASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR---SMNDA-LIV-----RVTG--------EE 292 (903)
T ss_pred hhhhHhhcCC------CchhHHHHHHHHHHhcCCHH-HHHHHHHhcccc---cCCHH-HHH-----HHcC--------CC
Confidence 1111111000 01134444333 47899997 999999999986 23322 221 1111 12
Q ss_pred hHHHHHHHHHHcccccccccCCCcCcEEEccchHHHHHHHHh
Q 003753 425 EGKFILESLKLACLLEEVEVNNSEDFVKMHNMLRDMALWIAS 466 (798)
Q Consensus 425 ~~~~~l~~L~~~sll~~~~~~~~~~~~~mHdlv~d~a~~~~~ 466 (798)
.+...+++|.+.+++..... +...+|+.|++++++++....
T Consensus 293 ~~~~~L~~l~~~~l~~~~~~-~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 293 NGQMRLEELERQGLFIQRMD-DSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred cHHHHHHHHHHCCCeeEeec-CCCCEEehhHHHHHHHHHHHH
Confidence 34677999999999654321 114579999999999987753
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.32 E-value=2.4e-13 Score=136.61 Aligned_cols=148 Identities=21% Similarity=0.187 Sum_probs=120.6
Q ss_pred EEEEecCCcccchhhhhchhceeeEEeecCCCCCCCCCCC-CCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCc
Q 003753 473 ILVFQETDKSIKEQETASWKEAVRVSLWRSPSIDSLSPTP-PCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNA 551 (798)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~l~~lsl~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~ 551 (798)
..+.+.+.+..++|.. -++....+.+..| .|+.||+.. ..+++||.|+|++|.|..|.+..|.+++.|-.|-+.++.
T Consensus 49 ~~VdCr~~GL~eVP~~-LP~~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPAN-LPPETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred ceEEccCCCcccCccc-CCCcceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 3444556677777653 3357788899999 999998654 789999999999999999999889999988887776633
Q ss_pred ccccccc-cccCCCCCCEEEcCCCCCcccC-ccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCC
Q 003753 552 KLSKLHV-GEGELIDLQYLNLSNTNICELP-IGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTR 623 (798)
Q Consensus 552 ~i~~lp~-~i~~L~~L~~L~Ls~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 623 (798)
+|+.+|. .+++|..|+.|.+.-|++..++ ..+..|++|..|.+..|. +..++.+.+..+.+++++.+..|.
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 9999985 5788999999999888888774 568889999999999987 888988778899999999888766
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.30 E-value=3.7e-12 Score=148.82 Aligned_cols=258 Identities=20% Similarity=0.210 Sum_probs=164.6
Q ss_pred CCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcc-cccccc-cccCCCCCCEEEcCCC-CCcccCc
Q 003753 505 IDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAK-LSKLHV-GEGELIDLQYLNLSNT-NICELPI 581 (798)
Q Consensus 505 ~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~-i~~lp~-~i~~L~~L~~L~Ls~~-~i~~lp~ 581 (798)
..+.| ...+....|...+.+|.+..++.. ..++.|+.|-+.+|.. +..++. .+..++.|++|||++| .+..||.
T Consensus 513 ~~~~~-~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 513 LSEIP-QVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred ccccc-cccchhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 33455 456667889999999988777765 3456899999999832 566654 3778999999999998 8899999
Q ss_pred cccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEeccc
Q 003753 582 GIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTID 661 (798)
Q Consensus 582 ~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 661 (798)
.|+.|.+||+|+++++. +..+|.+ +++|.+|.+|++..+... ......+..|.+|+.|.+......
T Consensus 590 ~I~~Li~LryL~L~~t~-I~~LP~~-l~~Lk~L~~Lnl~~~~~l------------~~~~~i~~~L~~Lr~L~l~~s~~~ 655 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDTG-ISHLPSG-LGNLKKLIYLNLEVTGRL------------ESIPGILLELQSLRVLRLPRSALS 655 (889)
T ss_pred HHhhhhhhhcccccCCC-ccccchH-HHHHHhhheecccccccc------------ccccchhhhcccccEEEeeccccc
Confidence 99999999999999998 9999999 999999999999986543 122344556899999998765422
Q ss_pred chhhhhhhhhhcccceeeeeccCc----------hhhhccCceEEeecc-CCCCCCcccCCCCccEEEeecCCchhhhhc
Q 003753 662 SLNKLKSSLKLQSCIRRLVMGLPE----------AIFSQDLQDLSIINC-SIKDLTCIVYIPRLRFLFAKDCPSLEEIIA 730 (798)
Q Consensus 662 ~~~~l~~~~~~~~~L~~L~l~lp~----------~~lp~~L~~L~L~~~-~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~ 730 (798)
...........+.+|+.+++...+ ..+-...+.+.+.+| ..+.++.+..+.+|+.|.+.+|...+....
T Consensus 656 ~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~ 735 (889)
T KOG4658|consen 656 NDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIE 735 (889)
T ss_pred cchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcc
Confidence 222222223444455555552222 011022334444445 233345677888999999998876543321
Q ss_pred cccccCCCCcccc-cccccceeecCCccchhhcccCCCCCCCcceeeeccCCCCCC
Q 003753 731 SDLRFEPSEENLS-MFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCPSLRK 785 (798)
Q Consensus 731 ~~~~~~~~~~~~~-~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~ 785 (798)
... ..... .|++|..+.+.+|..++.+.+. .-.|+|+.|.+..|+.++.
T Consensus 736 ~~~-----~~~~~~~f~~l~~~~~~~~~~~r~l~~~-~f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 736 WEE-----SLIVLLCFPNLSKVSILNCHMLRDLTWL-LFAPHLTSLSLVSCRLLED 785 (889)
T ss_pred ccc-----ccchhhhHHHHHHHHhhccccccccchh-hccCcccEEEEeccccccc
Confidence 000 00011 2455555555555444443332 1235555555555554443
No 25
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.28 E-value=1.9e-09 Score=118.34 Aligned_cols=292 Identities=14% Similarity=0.082 Sum_probs=172.5
Q ss_pred cccchhHHHHHHHHHhhc----CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHH
Q 003753 131 NIVGIESRLSEVWRYIED----DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSR 206 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 206 (798)
.++||++++++|...|.+ .....+.|+|++|+|||++++.++++... ....-.++++++....+...++..|+++
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~-~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE-IAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 699999999999999843 34466889999999999999999998732 2223456777777777888999999999
Q ss_pred cCCCCCCCccccCCHHHHHHHHHHHhc--CCcEEEEEecccCcc------ccccc-CCC-CCCCcE--EEEeCCchHHhh
Q 003753 207 LGIDPDGDKWKNRDDQGRAAEIFRRLS--NKKFALLLDDLRERI------ELSEA-GVP-VQNASK--IVFTTIFEEVCS 274 (798)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~------~~~~~-~~p-~~~gs~--iivTTR~~~v~~ 274 (798)
+..... .....+..+....+.+.+. +++.+||||+++... .+..+ ... ...+++ +|.++....+..
T Consensus 110 l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 110 LFGHPP--PSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred hcCCCC--CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhh
Confidence 865211 0123456677777777775 456899999998642 11121 111 122333 566665544322
Q ss_pred hcC-------CCcceeccCCChHHHHHHHHHhccCc---ccCCChhHHHHHHHHHHHhCCCchHHHHHHHHh--c--CC-
Q 003753 275 SMS-------VDWRFKVDYLPQEEAWNLFRLKVTDE---VLNSHPEIRELAETVANMCGGLPLALVTIGSAM--A--SR- 339 (798)
Q Consensus 275 ~~~-------~~~~~~l~~L~~~~a~~Lf~~~~~~~---~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l--~--~~- 339 (798)
... ....+.+++++.++..+++..++... ..-.+..++.+++......|..+.|+.++-.+. + ..
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~ 267 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGS 267 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 211 12467899999999999999876322 112222333344444444566777777764322 1 11
Q ss_pred --CChhHHHHHHHHHhcCCCCCCCcccchhhhhhhhhcCCCchhHhHHHHhhc-CCC-CCceecHHHHHHH--HHhcCCC
Q 003753 340 --RDPDNWRYAIEELQRYPSGFESIGTHVFPLLKFSYDRLTSETHKTCFLYGS-LFP-RNQIIMKDELIEL--WIGEGLL 413 (798)
Q Consensus 340 --~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s-~fp-~~~~i~~~~li~~--W~a~g~i 413 (798)
-+.+..+.+.+... .....-.+..||.+ .|..+..++ ... ....+....+... .+++.+-
T Consensus 268 ~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~~~-~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 268 RKVTEEDVRKAYEKSE-------------IVHLSEVLRTLPLH-EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred CCcCHHHHHHHHHHHH-------------HHHHHHHHhcCCHH-HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 14455555555431 12234467889985 443333332 121 1123444444422 2222111
Q ss_pred cCCccHHHHHHhHHHHHHHHHHcccccccc
Q 003753 414 RDSHNIAVARREGKFILESLKLACLLEEVE 443 (798)
Q Consensus 414 ~~~~~~~~~~~~~~~~l~~L~~~sll~~~~ 443 (798)
... ........|++.|...++|+...
T Consensus 334 ~~~----~~~~~~~~~l~~L~~~glI~~~~ 359 (394)
T PRK00411 334 YEP----RTHTRFYEYINKLDMLGIINTRY 359 (394)
T ss_pred CCc----CcHHHHHHHHHHHHhcCCeEEEE
Confidence 110 01244577999999999998653
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.24 E-value=1.6e-09 Score=112.35 Aligned_cols=178 Identities=15% Similarity=0.231 Sum_probs=113.7
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 228 (798)
.+..++.|+|++|+||||+++.+++... ...+ .++|+ +....+..+++..|+..++.+.. ..+.......+
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~--~~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-----~~~~~~~~~~l 111 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD--QERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-----GRDKAALLREL 111 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC--CCCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-----CCCHHHHHHHH
Confidence 4456899999999999999999998862 1211 22333 33345778899999999987652 22333333344
Q ss_pred HHH-----hcCCcEEEEEecccCcc--cccccC--CC----CCCCcEEEEeCCchHHhhhcC----------CCcceecc
Q 003753 229 FRR-----LSNKKFALLLDDLRERI--ELSEAG--VP----VQNASKIVFTTIFEEVCSSMS----------VDWRFKVD 285 (798)
Q Consensus 229 ~~~-----l~~~r~LlVlDdv~~~~--~~~~~~--~p----~~~gs~iivTTR~~~v~~~~~----------~~~~~~l~ 285 (798)
... ..+++.++|+||++... .+..+. .. ......|++|... .....+. ....+.++
T Consensus 112 ~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~ 190 (269)
T TIGR03015 112 EDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLG 190 (269)
T ss_pred HHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCC
Confidence 332 26788999999998753 222211 11 1223345565543 2221111 13357899
Q ss_pred CCChHHHHHHHHHhccCcccCCCh-hHHHHHHHHHHHhCCCchHHHHHHHHh
Q 003753 286 YLPQEEAWNLFRLKVTDEVLNSHP-EIRELAETVANMCGGLPLALVTIGSAM 336 (798)
Q Consensus 286 ~L~~~~a~~Lf~~~~~~~~~~~~~-~~~~~~~~i~~~c~glPLai~~~g~~l 336 (798)
+++.+|..+++...+......... --.+..+.|++.++|.|..|..++..+
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999999998776433211111 124678999999999999999998776
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.20 E-value=1.4e-08 Score=110.21 Aligned_cols=291 Identities=13% Similarity=0.124 Sum_probs=171.2
Q ss_pred cccchhHHHHHHHHHhhc----CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCC---CeEEEEEcCCccCHHHHHHHH
Q 003753 131 NIVGIESRLSEVWRYIED----DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKF---GAVIMVKASTELNIEKIQDVI 203 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~vs~~~~~~~~~~~i 203 (798)
.++||++++++|..+|.. .....+.|+|++|+|||++++.+++......... -..+|+++....+...++..|
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i 95 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVEL 95 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHH
Confidence 599999999999999854 3456899999999999999999998763211111 246778887777788899999
Q ss_pred HHHcC---CCCCCCccccCCHHHHHHHHHHHhc--CCcEEEEEecccCcc----c-cccc-CC---CC--CCCcEEEEeC
Q 003753 204 RSRLG---IDPDGDKWKNRDDQGRAAEIFRRLS--NKKFALLLDDLRERI----E-LSEA-GV---PV--QNASKIVFTT 267 (798)
Q Consensus 204 ~~~l~---~~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~----~-~~~~-~~---p~--~~gs~iivTT 267 (798)
++++. .... ....+..+....+.+.+. +++++||||+++... + +..+ .. .. +....+|++|
T Consensus 96 ~~~l~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 96 ANQLRGSGEEVP---TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHhhcCCCCC---CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 99883 3221 122345556666666664 568899999998762 1 1111 11 11 1233445555
Q ss_pred CchHHhhhcC-------CCcceeccCCChHHHHHHHHHhccCc--ccCCChhHHHHHHHHHHHhCCCchHH-HHHHHHh-
Q 003753 268 IFEEVCSSMS-------VDWRFKVDYLPQEEAWNLFRLKVTDE--VLNSHPEIRELAETVANMCGGLPLAL-VTIGSAM- 336 (798)
Q Consensus 268 R~~~v~~~~~-------~~~~~~l~~L~~~~a~~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~glPLai-~~~g~~l- 336 (798)
........+. ....+.+++++.++..+++..++... ....+++..+...+++....|.|-.+ .++-...
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4443221111 12457899999999999999887421 11123333445556677777887433 3322111
Q ss_pred -c--CC---CChhHHHHHHHHHhcCCCCCCCcccchhhhhhhhhcCCCchhHhHHHHhhcCC--CCCceecHHHHHHHH-
Q 003753 337 -A--SR---RDPDNWRYAIEELQRYPSGFESIGTHVFPLLKFSYDRLTSETHKTCFLYGSLF--PRNQIIMKDELIELW- 407 (798)
Q Consensus 337 -~--~~---~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~f--p~~~~i~~~~li~~W- 407 (798)
. .+ -+.+..+.+.+.+. .....-++..||.+ .+..+..++.. ..+..+....+...+
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~~~-~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLPTH-SKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 1 11 23344444444331 12233466788886 55444333211 133446666665533
Q ss_pred -HhcCC-CcCCccHHHHHHhHHHHHHHHHHcccccccc
Q 003753 408 -IGEGL-LRDSHNIAVARREGKFILESLKLACLLEEVE 443 (798)
Q Consensus 408 -~a~g~-i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~ 443 (798)
+++.+ +.+ ..+.....++..|...|+++...
T Consensus 319 ~~~~~~~~~~-----~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 319 EVCEDIGVDP-----LTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHhcCCCC-----CcHHHHHHHHHHHHhcCCeEEEE
Confidence 12211 111 22466778899999999999764
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.18 E-value=8.8e-12 Score=133.00 Aligned_cols=254 Identities=18% Similarity=0.126 Sum_probs=141.7
Q ss_pred hceeeEEeecCCCCC-----CCCCCCCCCCcceeeeeccccccccc------HHHHhcCCceeEEeCCCCcccc-ccccc
Q 003753 492 KEAVRVSLWRSPSID-----SLSPTPPCSPRLLTLLVRYTMIKEFE------NKFFKSMYALRVLDSSQNAKLS-KLHVG 559 (798)
Q Consensus 492 ~~l~~lsl~~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~l~------~~~~~~l~~Lr~L~L~~~~~i~-~lp~~ 559 (798)
..++.+.+.++ .+. .++..+...++|+.|.++++.+...+ ...+..+++|++|++++| .+. ..+..
T Consensus 23 ~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~ 100 (319)
T cd00116 23 LCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN-ALGPDGCGV 100 (319)
T ss_pred hhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC-CCChhHHHH
Confidence 34677777776 542 23434456677888888777554211 123666778888888888 555 33444
Q ss_pred ccCCCC---CCEEEcCCCCCc-----ccCccccCC-CcccEEeCCCCCCcc-----cccchhhcCCCCCccccccCCCCC
Q 003753 560 EGELID---LQYLNLSNTNIC-----ELPIGIKSC-THLRTLLLDGTENLK-----AIPVGMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 560 i~~L~~---L~~L~Ls~~~i~-----~lp~~i~~l-~~L~~L~l~~~~~l~-----~lp~~~i~~L~~L~~L~l~~~~~~ 625 (798)
+..+.+ |++|++++|.+. .+...+..+ ++|+.|++++|. +. .++.. +..+++|++|++++|.+.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKA-LRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHH-HHhCCCcCEEECcCCCCc
Confidence 444444 888888888765 223345566 788888888886 44 23333 566777888888877654
Q ss_pred CccCCCCCCCcccccHHHhccCCCCCeeEEEEecccchh--hhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCC
Q 003753 626 GFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDSLN--KLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIK 703 (798)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~--~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~ 703 (798)
... -......+..+++|+.|+++.+...... .+.... ..+ ++|+.|++++|.++
T Consensus 179 ~~~--------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~---------------~~~-~~L~~L~ls~n~l~ 234 (319)
T cd00116 179 DAG--------IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL---------------ASL-KSLEVLNLGDNNLT 234 (319)
T ss_pred hHH--------HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh---------------ccc-CCCCEEecCCCcCc
Confidence 100 0112234555667888887655433211 111111 123 67888888888665
Q ss_pred CC--Cccc-----CCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhh-----cccCCCCC-C
Q 003753 704 DL--TCIV-----YIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKN-----ICHKAMAF-P 770 (798)
Q Consensus 704 ~l--~~l~-----~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~-----i~~~~~~~-~ 770 (798)
.. ..+. ..+.|++|++++|.....-. ......+..+++|+.++++++. +.. +......+ +
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~------~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~~~~~~~~~~ 307 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDITDDGA------KDLAEVLAEKESLLELDLRGNK-FGEEGAQLLAESLLEPGN 307 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCCCcHHH------HHHHHHHhcCCCccEEECCCCC-CcHHHHHHHHHHHhhcCC
Confidence 42 1111 24688888888764321000 0011234455788888888743 322 22222233 5
Q ss_pred CcceeeeccC
Q 003753 771 SLERIYVHGC 780 (798)
Q Consensus 771 ~L~~L~l~~c 780 (798)
.|++|++.+.
T Consensus 308 ~~~~~~~~~~ 317 (319)
T cd00116 308 ELESLWVKDD 317 (319)
T ss_pred chhhcccCCC
Confidence 6677666553
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.16 E-value=1.3e-11 Score=131.58 Aligned_cols=236 Identities=20% Similarity=0.161 Sum_probs=153.8
Q ss_pred CCCCCcceeeeecccccc-----cccHHHHhcCCceeEEeCCCCccccc-------ccccccCCCCCCEEEcCCCCCc-c
Q 003753 512 PPCSPRLLTLLVRYTMIK-----EFENKFFKSMYALRVLDSSQNAKLSK-------LHVGEGELIDLQYLNLSNTNIC-E 578 (798)
Q Consensus 512 ~~~~~~L~~L~l~~~~~~-----~l~~~~~~~l~~Lr~L~L~~~~~i~~-------lp~~i~~L~~L~~L~Ls~~~i~-~ 578 (798)
+..+.+|+.|.+.+|.+. .++.. +...+.|+.|+++++ .+.. ++..+..+++|++|++++|.+. .
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 355667999999999763 34433 667788999999988 5552 3455677889999999999876 3
Q ss_pred cCccccCCCc---ccEEeCCCCCCccc-----ccchhhcCC-CCCccccccCCCCCCccCCCCCCCcccccHHHhccCCC
Q 003753 579 LPIGIKSCTH---LRTLLLDGTENLKA-----IPVGMLSSL-LSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKH 649 (798)
Q Consensus 579 lp~~i~~l~~---L~~L~l~~~~~l~~-----lp~~~i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 649 (798)
.+..+..+.+ |++|++++|. +.. +... +..+ ++|+.|++++|.+... ........+..+++
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~--------~~~~~~~~~~~~~~ 166 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGA--------SCEALAKALRANRD 166 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHH-HHhCCCCceEEEcCCCcCCch--------HHHHHHHHHHhCCC
Confidence 4445555555 9999999987 542 2222 5566 8999999999887510 01123455677788
Q ss_pred CCeeEEEEecccc--hhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCC------CcccCCCCccEEEeec
Q 003753 650 LQEISVIILTIDS--LNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDL------TCIVYIPRLRFLFAKD 721 (798)
Q Consensus 650 L~~L~l~~~~~~~--~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l------~~l~~l~~L~~L~L~~ 721 (798)
|+.|++..+.... +..+.... ..+ ++|+.|++++|.+... ..+..+++|++|++++
T Consensus 167 L~~L~l~~n~l~~~~~~~l~~~l---------------~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~ 230 (319)
T cd00116 167 LKELNLANNGIGDAGIRALAEGL---------------KAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230 (319)
T ss_pred cCEEECcCCCCchHHHHHHHHHH---------------HhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC
Confidence 9999997665432 11222111 112 6899999999976532 2356789999999999
Q ss_pred CCchhhhhccccccCCCCcccccccccceeecCCccch----hhcccCCCCCCCcceeeeccC
Q 003753 722 CPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNL----KNICHKAMAFPSLERIYVHGC 780 (798)
Q Consensus 722 ~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l----~~i~~~~~~~~~L~~L~l~~c 780 (798)
|.. .+....... .......+.|+.|++++|.-- ..+......+++|+++++++|
T Consensus 231 n~l-~~~~~~~l~----~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 231 NNL-TDAGAAALA----SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred CcC-chHHHHHHH----HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 753 321000000 000113589999999997432 223333445688999999885
No 30
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.15 E-value=2.7e-10 Score=115.44 Aligned_cols=195 Identities=21% Similarity=0.293 Sum_probs=104.0
Q ss_pred ccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHH---------H
Q 003753 132 IVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQD---------V 202 (798)
Q Consensus 132 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~---------~ 202 (798)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++++.+... ...+ .++|+...+......... .
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~--~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK--EKGY-KVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT----EE-CCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh--hcCC-cEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 789999999999999887778999999999999999999988762 1222 445554444432222111 1
Q ss_pred HHHHcCCCCCCCc------cccCCHHHHHHHHHHHhc--CCcEEEEEecccCcc-ccc---cc---------CCCCCCCc
Q 003753 203 IRSRLGIDPDGDK------WKNRDDQGRAAEIFRRLS--NKKFALLLDDLRERI-ELS---EA---------GVPVQNAS 261 (798)
Q Consensus 203 i~~~l~~~~~~~~------~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~-~~~---~~---------~~p~~~gs 261 (798)
+.+.++....... ............+.+.+. +++++||+||+.... ... .+ ..+.....
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 1122211110000 011122333344444443 345999999987655 111 11 01123444
Q ss_pred EEEEeCCchHHhhh--------cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHH
Q 003753 262 KIVFTTIFEEVCSS--------MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVT 331 (798)
Q Consensus 262 ~iivTTR~~~v~~~--------~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 331 (798)
.+|+++....+... .+....+.+++|+.+++++++...+... ... +.-.+..++|...+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 45555555544432 2233458999999999999999976543 211 11244569999999999998764
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.14 E-value=2.8e-12 Score=134.76 Aligned_cols=191 Identities=26% Similarity=0.268 Sum_probs=154.8
Q ss_pred ceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcC
Q 003753 493 EAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLS 572 (798)
Q Consensus 493 ~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls 572 (798)
......++.| .+.++|.....|-.|..|.+..|.+..+|.. +.++..|.+|||+.| .+..+|..++.|+ |+.|-++
T Consensus 76 dt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred chhhhhcccc-ccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEe
Confidence 3445667777 8888887788888999999999999999988 899999999999999 9999999999888 9999999
Q ss_pred CCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCe
Q 003753 573 NTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQE 652 (798)
Q Consensus 573 ~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 652 (798)
+|+++.+|..++.+..|.+||.+.|. +..+|.. ++.+.+|+.|++..|++. ..+.++..| .|..
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~-------------~lp~El~~L-pLi~ 215 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE-------------DLPEELCSL-PLIR 215 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh-------------hCCHHHhCC-ceee
Confidence 99999999999999999999999997 8899988 899999999999988765 456677755 4778
Q ss_pred eEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCCc----ccCCCCccEEEeecC
Q 003753 653 ISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLTC----IVYIPRLRFLFAKDC 722 (798)
Q Consensus 653 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~~----l~~l~~L~~L~L~~~ 722 (798)
|++++|+...++.-+. .+ ..|++|-|.+|-+.++|. -+...-.++|+..-|
T Consensus 216 lDfScNkis~iPv~fr------------------~m-~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 216 LDFSCNKISYLPVDFR------------------KM-RHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eecccCceeecchhhh------------------hh-hhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 8888777665553332 22 678888888887777763 245555677777766
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=6.2e-11 Score=111.20 Aligned_cols=137 Identities=28% Similarity=0.329 Sum_probs=41.6
Q ss_pred CCCCCCCCCCCCCcceeeeecccccccccHHHHh-cCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCcc
Q 003753 504 SIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFK-SMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIG 582 (798)
Q Consensus 504 ~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~-~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~ 582 (798)
.|+..+ ...++.+++.|+|.+|.+..+.. ++ .+.+|+.|+|++| .|+.++ .+..+++|++|++++|.|+.++..
T Consensus 8 ~i~~~~-~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 8 MIEQIA-QYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp -----------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHH
T ss_pred cccccc-ccccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccccc
Confidence 444555 44555567777777776666643 44 4667777777777 777764 466677777777777777777544
Q ss_pred c-cCCCcccEEeCCCCCCcccccc-hhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEE
Q 003753 583 I-KSCTHLRTLLLDGTENLKAIPV-GMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISV 655 (798)
Q Consensus 583 i-~~l~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l 655 (798)
+ ..+++|++|++++|. +.++.. ..++.+++|++|++.+|.+.. .......-+..+++|+.|+-
T Consensus 83 l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~---------~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCE---------KKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGG---------STTHHHHHHHH-TT-SEETT
T ss_pred hHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccc---------hhhHHHHHHHHcChhheeCC
Confidence 4 356777777777775 544432 125667777777777766541 01222333455666666654
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=8.8e-11 Score=110.15 Aligned_cols=120 Identities=27% Similarity=0.368 Sum_probs=45.6
Q ss_pred cccccccHHHHhcCCceeEEeCCCCccccccccccc-CCCCCCEEEcCCCCCcccCccccCCCcccEEeCCCCCCccccc
Q 003753 526 TMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEG-ELIDLQYLNLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIP 604 (798)
Q Consensus 526 ~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~-~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp 604 (798)
+.+..++. +.+..++|.|+|++| .|+.+. .++ .+.+|+.|++++|.|+.++ ++..+++|++|++++|. ++.++
T Consensus 7 ~~i~~~~~--~~n~~~~~~L~L~~n-~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~ 80 (175)
T PF14580_consen 7 NMIEQIAQ--YNNPVKLRELNLRGN-QISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSIS 80 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-C
T ss_pred cccccccc--ccccccccccccccc-cccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccc
Confidence 44555555 567778999999999 998874 466 6889999999999999997 78899999999999998 99997
Q ss_pred chhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecccc
Q 003753 605 VGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDS 662 (798)
Q Consensus 605 ~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~ 662 (798)
.+....+++|++|++++|.+. +-..+..|..+++|+.|++..+....
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~-----------~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKIS-----------DLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp HHHHHH-TT--EEE-TTS--------------SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred cchHHhCCcCCEEECcCCcCC-----------ChHHhHHHHcCCCcceeeccCCcccc
Confidence 662357999999999999987 33456788899999999997666543
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.04 E-value=1.3e-11 Score=129.95 Aligned_cols=189 Identities=17% Similarity=0.180 Sum_probs=152.9
Q ss_pred EEeecCCCCCCCCCCC--CCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCC
Q 003753 497 VSLWRSPSIDSLSPTP--PCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNT 574 (798)
Q Consensus 497 lsl~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~ 574 (798)
+.+++- .++.+|..- ..+..-...+++.|.+..+|.. +..+..|..|.|..| .+..+|..+++|..|.+|||+.|
T Consensus 55 l~Ls~r-rlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 55 LLLSGR-RLKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred cccccc-hhhcCCCccccccccchhhhhccccccccCchH-HHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccc
Confidence 344444 555555222 3455566789999999999998 788899999999999 99999999999999999999999
Q ss_pred CCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeE
Q 003753 575 NICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEIS 654 (798)
Q Consensus 575 ~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 654 (798)
+++.+|..+..|+ |+.|.+++|+ ++.+|.+ ++.+..|..|+.+.|.+. .....++.+.+|+.|.
T Consensus 132 qlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~-ig~~~tl~~ld~s~nei~-------------slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 132 QLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEE-IGLLPTLAHLDVSKNEIQ-------------SLPSQLGYLTSLRDLN 195 (722)
T ss_pred hhhcCChhhhcCc-ceeEEEecCc-cccCCcc-cccchhHHHhhhhhhhhh-------------hchHHhhhHHHHHHHH
Confidence 9999999888765 9999999997 9999998 899999999999998764 5677888888898888
Q ss_pred EEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCC-cccCCCCccEEEeecCCc
Q 003753 655 VIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLT-CIVYIPRLRFLFAKDCPS 724 (798)
Q Consensus 655 l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~-~l~~l~~L~~L~L~~~~~ 724 (798)
+..+....+..-.. . -.|..|++++|++..+| .+.+|..|++|-|.+|+.
T Consensus 196 vrRn~l~~lp~El~------------------~--LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 196 VRRNHLEDLPEELC------------------S--LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred HhhhhhhhCCHHHh------------------C--CceeeeecccCceeecchhhhhhhhheeeeeccCCC
Confidence 76554333322111 1 25899999999999988 589999999999998764
No 35
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.01 E-value=2.6e-08 Score=105.23 Aligned_cols=275 Identities=13% Similarity=0.111 Sum_probs=151.4
Q ss_pred cccchhHHHHHHHHHhhc-----CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHH
Q 003753 131 NIVGIESRLSEVWRYIED-----DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRS 205 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 205 (798)
+|||++..+++|..++.. .....+.++|++|+|||+||+.+++.. ...+ ..+..+.......+. ..+.
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~l~-~~l~ 77 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGDLA-AILT 77 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchhHH-HHHH
Confidence 699999999999998852 345678899999999999999999876 2222 122222111222222 2233
Q ss_pred HcCCCCC--CCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcccccccCCCCCCCcEEEEeCCchHHhhhc--CCCcc
Q 003753 206 RLGIDPD--GDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIELSEAGVPVQNASKIVFTTIFEEVCSSM--SVDWR 281 (798)
Q Consensus 206 ~l~~~~~--~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~~p~~~gs~iivTTR~~~v~~~~--~~~~~ 281 (798)
.++...- =++..... ......+...+.+.+..+|+|+..+...+... ..+.+-|..||+...+.... .....
T Consensus 78 ~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~li~~t~~~~~l~~~l~sR~~~~ 153 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRLD---LPPFTLVGATTRAGMLTSPLRDRFGII 153 (305)
T ss_pred hcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceeec---CCCeEEEEecCCccccCHHHHhhcceE
Confidence 3321110 00000011 12334566667777778888876655443322 12355666677765442221 11346
Q ss_pred eeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHHHhcCCCChhHHHHHHHHHhcCCCCCCC
Q 003753 282 FKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRYPSGFES 361 (798)
Q Consensus 282 ~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~~~~ 361 (798)
+.+++++.++..+++.+.+.......+ .+....|++.|+|.|-.+..++..+ |..+. ........ ..
T Consensus 154 ~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~-~~~~~~it-~~ 220 (305)
T TIGR00635 154 LRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRV--------RDFAQ-VRGQKIIN-RD 220 (305)
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHH--------HHHHH-HcCCCCcC-HH
Confidence 789999999999999988865433222 3467889999999997665555432 11110 00000000 00
Q ss_pred cccchhhhhhhhhcCCCchhHhHHHH-hhcCCCCCceecHHHHHHHHHhcCCCcCCccHHHHHHhHHHHHH-HHHHcccc
Q 003753 362 IGTHVFPLLKFSYDRLTSETHKTCFL-YGSLFPRNQIIMKDELIELWIGEGLLRDSHNIAVARREGKFILE-SLKLACLL 439 (798)
Q Consensus 362 ~~~~i~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~l~-~L~~~sll 439 (798)
.-......+...|..+++. .+..+. ..+.++.+ .+..+.+.... |. ....+...++ .|++++|+
T Consensus 221 ~v~~~l~~l~~~~~~l~~~-~~~~L~al~~~~~~~-~~~~~~ia~~l---g~---------~~~~~~~~~e~~Li~~~li 286 (305)
T TIGR00635 221 IALKALEMLMIDELGLDEI-DRKLLSVLIEQFQGG-PVGLKTLAAAL---GE---------DADTIEDVYEPYLLQIGFL 286 (305)
T ss_pred HHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHhCCC-cccHHHHHHHh---CC---------CcchHHHhhhHHHHHcCCc
Confidence 0012222245567778875 555555 44656543 34433332211 11 1234555577 69999999
Q ss_pred cccc
Q 003753 440 EEVE 443 (798)
Q Consensus 440 ~~~~ 443 (798)
+...
T Consensus 287 ~~~~ 290 (305)
T TIGR00635 287 QRTP 290 (305)
T ss_pred ccCC
Confidence 7543
No 36
>PF05729 NACHT: NACHT domain
Probab=98.98 E-value=4.1e-09 Score=100.42 Aligned_cols=139 Identities=18% Similarity=0.239 Sum_probs=90.9
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCC----CCeEEEEEcCCccCHH---HHHHHHHHHcCCCCCCCccccCCHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHK----FGAVIMVKASTELNIE---KIQDVIRSRLGIDPDGDKWKNRDDQGR 224 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 224 (798)
+++.|+|.+|+||||++++++..... ... +...+|++.+...+.. .+...|..+..... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-------~~~~~- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE-EEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-------APIEE- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh-cCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-------hhhHH-
Confidence 58999999999999999999988743 222 4567777766554332 34444444433221 11111
Q ss_pred HHHHHHH-hcCCcEEEEEecccCcccc---------ccc---CCC--CCCCcEEEEeCCchHH---hhhcCCCcceeccC
Q 003753 225 AAEIFRR-LSNKKFALLLDDLRERIEL---------SEA---GVP--VQNASKIVFTTIFEEV---CSSMSVDWRFKVDY 286 (798)
Q Consensus 225 ~~~l~~~-l~~~r~LlVlDdv~~~~~~---------~~~---~~p--~~~gs~iivTTR~~~v---~~~~~~~~~~~l~~ 286 (798)
.+... -..++++||+|++++...- ... .++ ..++.+++||+|.... .........+.+++
T Consensus 72 --~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~ 149 (166)
T PF05729_consen 72 --LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEP 149 (166)
T ss_pred --HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECC
Confidence 12222 2568999999999876431 111 122 3578999999998766 33344456789999
Q ss_pred CChHHHHHHHHHhcc
Q 003753 287 LPQEEAWNLFRLKVT 301 (798)
Q Consensus 287 L~~~~a~~Lf~~~~~ 301 (798)
|++++..+++++++.
T Consensus 150 ~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 150 FSEEDIKQYLRKYFS 164 (166)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999987753
No 37
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.97 E-value=1.7e-08 Score=112.45 Aligned_cols=294 Identities=17% Similarity=0.173 Sum_probs=187.8
Q ss_pred cccchhHHHHHHHHHhhc-CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc-cCHHHHHHHHHHHcC
Q 003753 131 NIVGIESRLSEVWRYIED-DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE-LNIEKIQDVIRSRLG 208 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~ 208 (798)
..|-|..-. +.|.. .+.+.+.|..++|.|||||+.+..... ..-..+.|.+.+.. .+.......++..++
T Consensus 20 ~~v~R~rL~----~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al~ 91 (894)
T COG2909 20 NYVVRPRLL----DRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAALQ 91 (894)
T ss_pred cccccHHHH----HHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHHH
Confidence 466666544 44544 478999999999999999999997732 33457899998765 468888888888886
Q ss_pred CCCC--CCc-------cccCCHHHHHHHHHHHhcC--CcEEEEEecccCccc-----ccccCCC-CCCCcEEEEeCCchH
Q 003753 209 IDPD--GDK-------WKNRDDQGRAAEIFRRLSN--KKFALLLDDLRERIE-----LSEAGVP-VQNASKIVFTTIFEE 271 (798)
Q Consensus 209 ~~~~--~~~-------~~~~~~~~~~~~l~~~l~~--~r~LlVlDdv~~~~~-----~~~~~~p-~~~gs~iivTTR~~~ 271 (798)
...+ ++. ....+...+...+...+.. ++..+||||..-..+ -..+.+. ...+-..|||||...
T Consensus 92 ~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 92 QATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred HhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 3321 111 1223444555566655543 689999999764421 1112222 567889999999864
Q ss_pred Hhhh--cC-CCcceecc----CCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHHHhcCCCChhH
Q 003753 272 VCSS--MS-VDWRFKVD----YLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGSAMASRRDPDN 344 (798)
Q Consensus 272 v~~~--~~-~~~~~~l~----~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~ 344 (798)
-... +. ....++++ .++.+|+-++|....+..- -+.-.+.+.+...|-+-|+..++=.++.+.+.+.
T Consensus 172 ~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q 245 (894)
T COG2909 172 QLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNNTSAEQ 245 (894)
T ss_pred CCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHH
Confidence 3221 11 12233333 5789999999987754322 1234788999999999999999887774333322
Q ss_pred HHHHHHHHhcCCCCCCCcccchh-hhhhhhhcCCCchhHhHHHHhhcCCCCCceecHHHHHHHHHhcCCCcCCccHHHHH
Q 003753 345 WRYAIEELQRYPSGFESIGTHVF-PLLKFSYDRLTSETHKTCFLYGSLFPRNQIIMKDELIELWIGEGLLRDSHNIAVAR 423 (798)
Q Consensus 345 w~~~~~~l~~~~~~~~~~~~~i~-~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~ 423 (798)
--..+ .+..+.+. -...--++.||++ +|..++-||+++.-. +.|+.. -.-+
T Consensus 246 ~~~~L----------sG~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f~----~eL~~~-------------Ltg~ 297 (894)
T COG2909 246 SLRGL----------SGAASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRFN----DELCNA-------------LTGE 297 (894)
T ss_pred Hhhhc----------cchHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHhh----HHHHHH-------------HhcC
Confidence 21111 11111111 1223357889997 999999999986421 222221 1223
Q ss_pred HhHHHHHHHHHHcccccccccCCCcCcEEEccchHHHHHHHHhh
Q 003753 424 REGKFILESLKLACLLEEVEVNNSEDFVKMHNMLRDMALWIASS 467 (798)
Q Consensus 424 ~~~~~~l~~L~~~sll~~~~~~~~~~~~~mHdlv~d~a~~~~~~ 467 (798)
+.+...+++|.+++|+-..-+ +...+|+.|.++.||.+.-...
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ld-d~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLD-DEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CcHHHHHHHHHhCCCceeeec-CCCceeehhHHHHHHHHhhhcc
Confidence 556778999999999764322 2378999999999998876655
No 38
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.97 E-value=8.1e-08 Score=102.10 Aligned_cols=276 Identities=14% Similarity=0.127 Sum_probs=150.6
Q ss_pred CcccchhHHHHHHHHHhhc-----CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIED-----DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIR 204 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 204 (798)
.+|+|++..++.+..++.. .....+.|+|++|+||||+|+.+++... ..+ .++..+. ......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~---~~~---~~~~~~~-~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG---VNI---RITSGPA-LEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC---CCe---EEEeccc-ccChHHHHHHH
Confidence 3799999999999887742 3456789999999999999999999872 221 1222211 12222233334
Q ss_pred HHcCCCCC--CCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcccccccCCCCCCCcEEEEeCCchHHhhhc--CCCc
Q 003753 205 SRLGIDPD--GDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIELSEAGVPVQNASKIVFTTIFEEVCSSM--SVDW 280 (798)
Q Consensus 205 ~~l~~~~~--~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~~p~~~gs~iivTTR~~~v~~~~--~~~~ 280 (798)
..+....- =++..... ......+...+.+.+..+|+|+..+...+.. ..| +.+-|..||+...+.... ....
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~-~l~--~~~li~at~~~~~l~~~L~sRf~~ 173 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIRL-DLP--PFTLIGATTRAGLLTSPLRDRFGI 173 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccceee-cCC--CceEEeecCCcccCCHHHHHhcCe
Confidence 43321110 00000000 1123335556666777777777555433221 122 245566677754432211 1134
Q ss_pred ceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHHHhcCCCChhHHHHHHHHHhcCCCCCC
Q 003753 281 RFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRYPSGFE 360 (798)
Q Consensus 281 ~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~~~ 360 (798)
.+.++++++++..+++.+.+.......+ .+.+..|++.|+|.|-.+..+...+. .|.... ...... .
T Consensus 174 ~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~I~-~ 240 (328)
T PRK00080 174 VQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGVIT-K 240 (328)
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCCCC-H
Confidence 6899999999999999998876543333 35688999999999965555544321 121110 000000 0
Q ss_pred CcccchhhhhhhhhcCCCchhHhHHHH-hhcCCCCCceecHHHHHHHHHhcCCCcCCccHHHHHHhHHHHHH-HHHHccc
Q 003753 361 SIGTHVFPLLKFSYDRLTSETHKTCFL-YGSLFPRNQIIMKDELIELWIGEGLLRDSHNIAVARREGKFILE-SLKLACL 438 (798)
Q Consensus 361 ~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~l~-~L~~~sl 438 (798)
..-......+...+..|++. .+..+. ....|+.+ .+..+.+.... | . ....+++.++ .|++.+|
T Consensus 241 ~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~-~~~~~~~a~~l---g---~------~~~~~~~~~e~~Li~~~l 306 (328)
T PRK00080 241 EIADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGG-PVGLDTLAAAL---G---E------ERDTIEDVYEPYLIQQGF 306 (328)
T ss_pred HHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCC-ceeHHHHHHHH---C---C------CcchHHHHhhHHHHHcCC
Confidence 00012334455667778775 566554 55667655 34444442221 1 1 1223444455 7888898
Q ss_pred ccccc
Q 003753 439 LEEVE 443 (798)
Q Consensus 439 l~~~~ 443 (798)
++...
T Consensus 307 i~~~~ 311 (328)
T PRK00080 307 IQRTP 311 (328)
T ss_pred cccCC
Confidence 87543
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.97 E-value=4.2e-10 Score=123.66 Aligned_cols=178 Identities=21% Similarity=0.259 Sum_probs=130.3
Q ss_pred CCCCCCcceeeeecccccccccHHHHhcCC-ceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCccccCCCcc
Q 003753 511 TPPCSPRLLTLLVRYTMIKEFENKFFKSMY-ALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKSCTHL 589 (798)
Q Consensus 511 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~-~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L 589 (798)
.+..++.+..|.+.+|.+..+++. ...+. +|+.|++++| .+..+|..+..+++|+.|++++|++..+|...+.+++|
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L 188 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL 188 (394)
T ss_pred hhhcccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhh
Confidence 445557788888888888888875 55553 8888888888 88888877888888888888888888888777788888
Q ss_pred cEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecccchhhhhhh
Q 003753 590 RTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDSLNKLKSS 669 (798)
Q Consensus 590 ~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~ 669 (798)
+.|++++|. +..+|.. +..+..|++|.+++|... ..+..+.++.++..|.+..+....+....
T Consensus 189 ~~L~ls~N~-i~~l~~~-~~~~~~L~~l~~~~N~~~-------------~~~~~~~~~~~l~~l~l~~n~~~~~~~~~-- 251 (394)
T COG4886 189 NNLDLSGNK-ISDLPPE-IELLSALEELDLSNNSII-------------ELLSSLSNLKNLSGLELSNNKLEDLPESI-- 251 (394)
T ss_pred hheeccCCc-cccCchh-hhhhhhhhhhhhcCCcce-------------ecchhhhhcccccccccCCceeeeccchh--
Confidence 888888887 8888875 556677888888877422 23444555566655554333322221111
Q ss_pred hhhcccceeeeeccCchhhhccCceEEeeccCCCCCCcccCCCCccEEEeecCCc
Q 003753 670 LKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLTCIVYIPRLRFLFAKDCPS 724 (798)
Q Consensus 670 ~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~ 724 (798)
..+ ++|+.|++++|.++.++.++.+.+|+.|+++++..
T Consensus 252 ----------------~~l-~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 252 ----------------GNL-SNLETLDLSNNQISSISSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred ----------------ccc-cccceeccccccccccccccccCccCEEeccCccc
Confidence 122 67999999999888888888899999999988543
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.2e-10 Score=119.10 Aligned_cols=107 Identities=21% Similarity=0.217 Sum_probs=58.4
Q ss_pred CCCCcceeeeecccccccccH-HHHhcCCceeEEeCCCCcccccc---cccccCCCCCCEEEcCCCCCcccCc--cccCC
Q 003753 513 PCSPRLLTLLVRYTMIKEFEN-KFFKSMYALRVLDSSQNAKLSKL---HVGEGELIDLQYLNLSNTNICELPI--GIKSC 586 (798)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~-~~~~~l~~Lr~L~L~~~~~i~~l---p~~i~~L~~L~~L~Ls~~~i~~lp~--~i~~l 586 (798)
.++.+|+...|.++.+...+. .....|+++|.|||++| -+... -+-+..|++|+.|+|+.|.+...-. .-..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 556677777777776555443 33566777777777776 44432 2334566677777777765543311 11244
Q ss_pred CcccEEeCCCCCCccc--ccchhhcCCCCCccccccCC
Q 003753 587 THLRTLLLDGTENLKA--IPVGMLSSLLSLRVFSWVPT 622 (798)
Q Consensus 587 ~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~ 622 (798)
.+|+.|.+++|. +.. +-. ....+++|..|++..|
T Consensus 197 ~~lK~L~l~~CG-ls~k~V~~-~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 197 SHLKQLVLNSCG-LSWKDVQW-ILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhhheEEeccCC-CCHHHHHH-HHHhCCcHHHhhhhcc
Confidence 556666666664 321 111 1334555666666554
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=3.4e-10 Score=109.96 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=94.3
Q ss_pred CCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecccchhh
Q 003753 586 CTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDSLNK 665 (798)
Q Consensus 586 l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~ 665 (798)
.+.|++|||++|. ++.+..+ +.-++.++.|+++.|.+. .+..|..|.+|..|+++.+....+..
T Consensus 283 Wq~LtelDLS~N~-I~~iDES-vKL~Pkir~L~lS~N~i~--------------~v~nLa~L~~L~~LDLS~N~Ls~~~G 346 (490)
T KOG1259|consen 283 WQELTELDLSGNL-ITQIDES-VKLAPKLRRLILSQNRIR--------------TVQNLAELPQLQLLDLSGNLLAECVG 346 (490)
T ss_pred Hhhhhhccccccc-hhhhhhh-hhhccceeEEecccccee--------------eehhhhhcccceEeecccchhHhhhh
Confidence 3567788888886 7777776 677788888888887654 34557777778888887665544443
Q ss_pred hhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCCcccCCCCccEEEeecCCchhhhhccccccCCCCcccccc
Q 003753 666 LKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLTCIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMF 745 (798)
Q Consensus 666 l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~ 745 (798)
+-.. + .|++.|.|++|.+.+++.++++-+|..|++++ +.++.+.. ...++.+
T Consensus 347 wh~K------------------L-GNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~-N~Ie~lde--------V~~IG~L 398 (490)
T KOG1259|consen 347 WHLK------------------L-GNIKTLKLAQNKIETLSGLRKLYSLVNLDLSS-NQIEELDE--------VNHIGNL 398 (490)
T ss_pred hHhh------------------h-cCEeeeehhhhhHhhhhhhHhhhhheeccccc-cchhhHHH--------hcccccc
Confidence 3322 2 78899999999888888888889999999998 45666522 3577889
Q ss_pred cccceeecCCcc
Q 003753 746 LHLRQAYFFKLP 757 (798)
Q Consensus 746 ~~L~~L~L~~~~ 757 (798)
|+|+.|.|.++|
T Consensus 399 PCLE~l~L~~NP 410 (490)
T KOG1259|consen 399 PCLETLRLTGNP 410 (490)
T ss_pred cHHHHHhhcCCC
Confidence 999999999865
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=6.6e-10 Score=113.80 Aligned_cols=208 Identities=16% Similarity=0.168 Sum_probs=143.5
Q ss_pred hchhceeeEEeecCCCCCCCCC--CCCCCCcceeeeeccccccccc--HHHHhcCCceeEEeCCCCccccccccc--ccC
Q 003753 489 ASWKEAVRVSLWRSPSIDSLSP--TPPCSPRLLTLLVRYTMIKEFE--NKFFKSMYALRVLDSSQNAKLSKLHVG--EGE 562 (798)
Q Consensus 489 ~~~~~l~~lsl~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~l~--~~~~~~l~~Lr~L~L~~~~~i~~lp~~--i~~ 562 (798)
...++++.+++.+. .+...+. ....|++++.|+|+.|-+..+- ..+...+++|+.|+|+.| .+....++ -..
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhh
Confidence 34568999999988 7776663 4578999999999999544332 234678999999999999 77644322 246
Q ss_pred CCCCCEEEcCCCCCc--ccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCccccc
Q 003753 563 LIDLQYLNLSNTNIC--ELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLL 640 (798)
Q Consensus 563 L~~L~~L~Ls~~~i~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 640 (798)
+.+|+.|.|+.|.++ .+...+..+++|..|+|.+|..+..-... ..-+..|+.|++++|++.. ...
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~-----------~~~ 263 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLID-----------FDQ 263 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccc-----------ccc
Confidence 789999999999886 33445567899999999999533222222 3457789999999998763 233
Q ss_pred HHHhccCCCCCeeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCCc---ccCCCCccEE
Q 003753 641 LEELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLTC---IVYIPRLRFL 717 (798)
Q Consensus 641 ~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~~---l~~l~~L~~L 717 (798)
....+.++.|+.|.++.++...+....... +... ..| ++|++|++..|++.+++. +..+++|+.|
T Consensus 264 ~~~~~~l~~L~~Lnls~tgi~si~~~d~~s-----~~kt------~~f-~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l 331 (505)
T KOG3207|consen 264 GYKVGTLPGLNQLNLSSTGIASIAEPDVES-----LDKT------HTF-PKLEYLNISENNIRDWRSLNHLRTLENLKHL 331 (505)
T ss_pred ccccccccchhhhhccccCcchhcCCCccc-----hhhh------ccc-ccceeeecccCccccccccchhhccchhhhh
Confidence 345667778888888766665554332210 0000 235 889999999997766554 4456777777
Q ss_pred EeecC
Q 003753 718 FAKDC 722 (798)
Q Consensus 718 ~L~~~ 722 (798)
.+..+
T Consensus 332 ~~~~n 336 (505)
T KOG3207|consen 332 RITLN 336 (505)
T ss_pred hcccc
Confidence 76543
No 43
>PRK06893 DNA replication initiation factor; Validated
Probab=98.84 E-value=3.4e-08 Score=98.88 Aligned_cols=150 Identities=15% Similarity=0.167 Sum_probs=94.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF 229 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 229 (798)
..+.+.++|++|+|||+||+.+++... .....+.|+.+.... ... ..+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~~---~~~-------------------------~~~~ 86 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKSQ---YFS-------------------------PAVL 86 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHhh---hhh-------------------------HHHH
Confidence 346789999999999999999999873 223345677653210 000 0111
Q ss_pred HHhcCCcEEEEEecccCc---ccccccCCC-----CCCCcEEE-EeCCc---------hHHhhhcCCCcceeccCCChHH
Q 003753 230 RRLSNKKFALLLDDLRER---IELSEAGVP-----VQNASKIV-FTTIF---------EEVCSSMSVDWRFKVDYLPQEE 291 (798)
Q Consensus 230 ~~l~~~r~LlVlDdv~~~---~~~~~~~~p-----~~~gs~ii-vTTR~---------~~v~~~~~~~~~~~l~~L~~~~ 291 (798)
+.+. +.-+||+||+|.. .+|....+. ...|+.+| +|++. +.+...+.....++++++++++
T Consensus 87 ~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~ 165 (229)
T PRK06893 87 ENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQ 165 (229)
T ss_pred hhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHH
Confidence 1222 3348999999874 233322111 23455654 45543 3556666666789999999999
Q ss_pred HHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHH
Q 003753 292 AWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGS 334 (798)
Q Consensus 292 a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 334 (798)
.++++++.+.......+ ++...-|++.+.|..-++..+-.
T Consensus 166 ~~~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 166 KIIVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 99999998875543333 45677788888776655554433
No 44
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.81 E-value=1.5e-06 Score=98.04 Aligned_cols=203 Identities=17% Similarity=0.195 Sum_probs=124.9
Q ss_pred CcccchhHHHHHHHHHhhc-----CCceEEEEEecCCchHHHHHHHHHHHhhhh--cCCCC--eEEEEEcCCccCHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIED-----DGVKIIGLYGVRGVGKSTLLKQLNDTFSDM--SHKFG--AVIMVKASTELNIEKIQ 200 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~--~~~wv~vs~~~~~~~~~ 200 (798)
+.+.|||+++++|...|.. +...++.|+|++|+|||+.++.|.+..... +.... .+++|.+..-.+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 3688999999999998843 223578899999999999999998876321 11222 36778777777888999
Q ss_pred HHHHHHcCCCCCCCccccCCHHHHHHHHHHHhc---CCcEEEEEecccCccc-----cccc-CCCCCCCcEEEE--eCCc
Q 003753 201 DVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLS---NKKFALLLDDLRERIE-----LSEA-GVPVQNASKIVF--TTIF 269 (798)
Q Consensus 201 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~---~~r~LlVlDdv~~~~~-----~~~~-~~p~~~gs~iiv--TTR~ 269 (798)
..|.+++..... .......+....+...+. +...+||||+++.... +-.+ ..+...+++|+| +|..
T Consensus 835 qvI~qqL~g~~P---~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 835 QVLYKQLFNKKP---PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHcCCCC---CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 999998843321 122334445555555542 2345899999985431 1111 113334555544 3332
Q ss_pred h--------HHhhhcCCCcceeccCCChHHHHHHHHHhccCcc-cCCChhHHHHHHHHHHHhCCCchHHHHHHHHh
Q 003753 270 E--------EVCSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEV-LNSHPEIRELAETVANMCGGLPLALVTIGSAM 336 (798)
Q Consensus 270 ~--------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l 336 (798)
. .+...++. ..+..++++.++-.+++..++.... .-.+.-++-+|+.++..-|..-.||.++-.+.
T Consensus 912 lDLperLdPRLRSRLg~-eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhcchhhhhhhhhcccc-ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 2 22222322 2366799999999999999886432 12223344445555555555666666655444
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.81 E-value=7.3e-10 Score=107.69 Aligned_cols=131 Identities=21% Similarity=0.310 Sum_probs=106.6
Q ss_pred hchhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCE
Q 003753 489 ASWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQY 568 (798)
Q Consensus 489 ~~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~ 568 (798)
..|..+..++++.| .|..+..+..-.|.+|.|++++|.+..+.. +..+++|..||||+| .++++-..=.+|-|.++
T Consensus 281 dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKT 356 (490)
T ss_pred chHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEee
Confidence 45788888999998 888888677778899999999998887766 788899999999999 77776554456778889
Q ss_pred EEcCCCCCcccCccccCCCcccEEeCCCCCCcccccc-hhhcCCCCCccccccCCCCC
Q 003753 569 LNLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPV-GMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 569 L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~ 625 (798)
|.|++|.|..+. ++++|.+|..||+++|+ +..+.. ..|++|+.|+++.+.+|.+.
T Consensus 357 L~La~N~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 357 LKLAQNKIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eehhhhhHhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCcc
Confidence 999999888886 78889999999999987 666642 12888999999999888765
No 46
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.72 E-value=3.6e-07 Score=93.71 Aligned_cols=221 Identities=19% Similarity=0.181 Sum_probs=124.6
Q ss_pred cccchhHHH---HHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHc
Q 003753 131 NIVGIESRL---SEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRL 207 (798)
Q Consensus 131 ~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 207 (798)
++||.+.-+ .-|...+..+.+.-.-+||++|+||||||+.+.... ...|. .+|...+-.+-+++|
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~-----~~sAv~~gvkdlr~i---- 92 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFE-----ALSAVTSGVKDLREI---- 92 (436)
T ss_pred HhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceE-----EeccccccHHHHHHH----
Confidence 455554433 223444556888899999999999999999998876 34443 333332222222222
Q ss_pred CCCCCCCccccCCHHHHHHHH-HHHhcCCcEEEEEecccCcc-cccccCCC-CCCCcEEEE--eCCchHHh---hhcCCC
Q 003753 208 GIDPDGDKWKNRDDQGRAAEI-FRRLSNKKFALLLDDLRERI-ELSEAGVP-VQNASKIVF--TTIFEEVC---SSMSVD 279 (798)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l-~~~l~~~r~LlVlDdv~~~~-~~~~~~~p-~~~gs~iiv--TTR~~~v~---~~~~~~ 279 (798)
.+.- +....+++.+|++|.|..-. .-.+..+| -.+|.-|+| ||-++... ....-.
T Consensus 93 -----------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~ 155 (436)
T COG2256 93 -----------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRA 155 (436)
T ss_pred -----------------HHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhh
Confidence 2222 22334899999999998653 33445677 778888877 67666441 112345
Q ss_pred cceeccCCChHHHHHHHHHhccCccc--C-CChhH-HHHHHHHHHHhCCCchHHHHH---HHHhcCCC---ChhHHHHHH
Q 003753 280 WRFKVDYLPQEEAWNLFRLKVTDEVL--N-SHPEI-RELAETVANMCGGLPLALVTI---GSAMASRR---DPDNWRYAI 349 (798)
Q Consensus 280 ~~~~l~~L~~~~a~~Lf~~~~~~~~~--~-~~~~~-~~~~~~i~~~c~glPLai~~~---g~~l~~~~---~~~~w~~~~ 349 (798)
.++.+++|+.++-.+++.+.+..... . ....+ ++....+++.++|---++-.. +..+.... ..+..++.+
T Consensus 156 ~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l 235 (436)
T COG2256 156 RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEIL 235 (436)
T ss_pred heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHH
Confidence 68999999999999999884422211 1 11112 345667888888765432222 22222211 223333333
Q ss_pred HHHhcCCCCCCCcccchhhhhhhhhcCCCch
Q 003753 350 EELQRYPSGFESIGTHVFPLLKFSYDRLTSE 380 (798)
Q Consensus 350 ~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 380 (798)
.+-........+..-++..++.-|...-.++
T Consensus 236 ~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 236 QRRSARFDKDGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred hhhhhccCCCcchHHHHHHHHHHhhccCCcC
Confidence 3211111111111125777777787777665
No 47
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.71 E-value=1.8e-07 Score=94.06 Aligned_cols=169 Identities=17% Similarity=0.187 Sum_probs=104.0
Q ss_pred ccc--chhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcC
Q 003753 131 NIV--GIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 131 ~~v--Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 208 (798)
+|+ +.+..++.+.+++.......+.|+|..|+|||+||+.+++... ......++++++.-.+ ..
T Consensus 16 ~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~------~~----- 81 (226)
T TIGR03420 16 NFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQ------AD----- 81 (226)
T ss_pred CcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHH------hH-----
Confidence 454 3456777777776666677999999999999999999998862 2334456665443211 00
Q ss_pred CCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc---cccccCC---C--CCCCcEEEEeCCchH---------
Q 003753 209 IDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI---ELSEAGV---P--VQNASKIVFTTIFEE--------- 271 (798)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~---~~~~~~~---p--~~~gs~iivTTR~~~--------- 271 (798)
..+...+.+ .-+||+||++... +|..... . ...+.++|+||+...
T Consensus 82 -----------------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~ 143 (226)
T TIGR03420 82 -----------------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPD 143 (226)
T ss_pred -----------------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHH
Confidence 011112222 2389999997643 2222111 1 234458888887432
Q ss_pred HhhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHH
Q 003753 272 VCSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGS 334 (798)
Q Consensus 272 v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 334 (798)
+...+.....++++++++++...++.+.+.......+ .+..+.+++.++|.|..+..+..
T Consensus 144 L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 144 LRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLP---DEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 2223333457899999999999998876543222222 34567778888888887766643
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=6.6e-10 Score=108.06 Aligned_cols=84 Identities=20% Similarity=0.130 Sum_probs=47.1
Q ss_pred CceeEEeCCCCcccc--cccccccCCCCCCEEEcCCCCCc-ccCccccCCCcccEEeCCCCCCcccccch-hhcCCCCCc
Q 003753 540 YALRVLDSSQNAKLS--KLHVGEGELIDLQYLNLSNTNIC-ELPIGIKSCTHLRTLLLDGTENLKAIPVG-MLSSLLSLR 615 (798)
Q Consensus 540 ~~Lr~L~L~~~~~i~--~lp~~i~~L~~L~~L~Ls~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-~i~~L~~L~ 615 (798)
..|++|||++. .|+ .+-.-+..+.+|+-|.|.++.+. .+...+.+-.+|+.|+++.|..++..... ++.+++.|.
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 34677777776 555 23333455666666666666554 23344555566677777666655443221 245566666
Q ss_pred cccccCCCC
Q 003753 616 VFSWVPTRY 624 (798)
Q Consensus 616 ~L~l~~~~~ 624 (798)
.|++++|..
T Consensus 264 ~LNlsWc~l 272 (419)
T KOG2120|consen 264 ELNLSWCFL 272 (419)
T ss_pred hcCchHhhc
Confidence 666666543
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.70 E-value=1.2e-08 Score=112.26 Aligned_cols=176 Identities=23% Similarity=0.281 Sum_probs=143.2
Q ss_pred hceeeEEeecCCCCCCCCCCCCCCC-cceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEE
Q 003753 492 KEAVRVSLWRSPSIDSLSPTPPCSP-RLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLN 570 (798)
Q Consensus 492 ~~l~~lsl~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~ 570 (798)
..+..+.+.++ .+.+++....... +|+.|++++|.+..+|.. ++.+++|+.|++++| .+..+|...+.+++|+.|+
T Consensus 116 ~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhhhhhee
Confidence 57889999999 9999996666664 999999999999999755 889999999999999 9999999888999999999
Q ss_pred cCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCC
Q 003753 571 LSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHL 650 (798)
Q Consensus 571 Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L 650 (798)
+++|++..+|..+..+..|++|.+++|. ....+.. +.++.++..|.+.++... ..+..++.+++|
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~-------------~~~~~~~~l~~l 257 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE-------------DLPESIGNLSNL 257 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee-------------eccchhcccccc
Confidence 9999999999887788889999999996 4455554 888999999987776643 124567778889
Q ss_pred CeeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCC
Q 003753 651 QEISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDL 705 (798)
Q Consensus 651 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l 705 (798)
+.|+++.+....+..+. .+ .+|+.|+++++.+...
T Consensus 258 ~~L~~s~n~i~~i~~~~-------------------~~-~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 258 ETLDLSNNQISSISSLG-------------------SL-TNLRELDLSGNSLSNA 292 (394)
T ss_pred ceecccccccccccccc-------------------cc-CccCEEeccCcccccc
Confidence 99998877665555421 22 7888899988855543
No 50
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.68 E-value=5.5e-07 Score=106.40 Aligned_cols=308 Identities=16% Similarity=0.175 Sum_probs=171.8
Q ss_pred ccchhHHHHHHHHHhhc---CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccC---HHHHHHHHHH
Q 003753 132 IVGIESRLSEVWRYIED---DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELN---IEKIQDVIRS 205 (798)
Q Consensus 132 ~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~---~~~~~~~i~~ 205 (798)
++||+.+++.|.+.+.+ +...++.+.|..|||||+++++|.....+.++.|-.-.+-....+.. ..+..++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 78999999999999854 56679999999999999999999988743222221111111222221 2233333333
Q ss_pred Hc-------------------CCCCC---------------CC---ccccCCHHHH-----HHHHHHHh-cCCcEEEEEe
Q 003753 206 RL-------------------GIDPD---------------GD---KWKNRDDQGR-----AAEIFRRL-SNKKFALLLD 242 (798)
Q Consensus 206 ~l-------------------~~~~~---------------~~---~~~~~~~~~~-----~~~l~~~l-~~~r~LlVlD 242 (798)
++ +.... ++ .........+ ...+.... +.|+.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 33 11100 00 0001111111 12222233 3469999999
Q ss_pred ccc-Ccc---ccccc-----C--CCCCCCcEEEEeCCch--HHhhhcCCCcceeccCCChHHHHHHHHHhccCcccCCCh
Q 003753 243 DLR-ERI---ELSEA-----G--VPVQNASKIVFTTIFE--EVCSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHP 309 (798)
Q Consensus 243 dv~-~~~---~~~~~-----~--~p~~~gs~iivTTR~~--~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~ 309 (798)
|+. -+. ++... . .+..+-.-.+.|.+.. .+-........|.|.||+..+...+.....+.....
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~--- 238 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL--- 238 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc---
Confidence 984 332 11111 0 1101111222233322 112222344679999999999999999988764322
Q ss_pred hHHHHHHHHHHHhCCCchHHHHHHHHhcCC------CChhHHHHHHHHHhcCCCCCCCcccchhhhhhhhhcCCCchhHh
Q 003753 310 EIRELAETVANMCGGLPLALVTIGSAMASR------RDPDNWRYAIEELQRYPSGFESIGTHVFPLLKFSYDRLTSETHK 383 (798)
Q Consensus 310 ~~~~~~~~i~~~c~glPLai~~~g~~l~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k 383 (798)
..+..+.|+++..|+|+-+..+-..+... .+...|+.-..++.. .+.. +.+...+..-.+.||.. .+
T Consensus 239 -~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~----~~~~-~~vv~~l~~rl~kL~~~-t~ 311 (849)
T COG3899 239 -PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI----LATT-DAVVEFLAARLQKLPGT-TR 311 (849)
T ss_pred -cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC----chhh-HHHHHHHHHHHhcCCHH-HH
Confidence 24568899999999999999999888763 344455543322211 1111 23556688889999996 89
Q ss_pred HHHHhhcCCCCCceecHHHHHHHHHhcCCCcCCccHHHHHHhHHHHHHHHHHcccccccccC--C-CcC---cEEEccch
Q 003753 384 TCFLYGSLFPRNQIIMKDELIELWIGEGLLRDSHNIAVARREGKFILESLKLACLLEEVEVN--N-SED---FVKMHNML 457 (798)
Q Consensus 384 ~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~--~-~~~---~~~mHdlv 457 (798)
..+-..|++-..+. .+.|...|- ......+....+.|.....+..++.. + ... +-..||.+
T Consensus 312 ~Vl~~AA~iG~~F~--l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 312 EVLKAAACIGNRFD--LDTLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHhCccCC--HHHHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 99999988875544 444444331 12233444445555555444422110 0 011 22467777
Q ss_pred HHHHH
Q 003753 458 RDMAL 462 (798)
Q Consensus 458 ~d~a~ 462 (798)
++.|=
T Consensus 379 qqaaY 383 (849)
T COG3899 379 QQAAY 383 (849)
T ss_pred HHHHh
Confidence 76664
No 51
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.68 E-value=7.1e-07 Score=97.84 Aligned_cols=176 Identities=20% Similarity=0.221 Sum_probs=105.4
Q ss_pred cccchhHHHHH---HHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHc
Q 003753 131 NIVGIESRLSE---VWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRL 207 (798)
Q Consensus 131 ~~vGr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 207 (798)
++||++..+.. +.+++..+....+.++|++|+||||+|+.+++.. ...| +.++....-.+-.+.+.
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~ii--- 81 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREVI--- 81 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHHH---
Confidence 68999888766 8888877777889999999999999999998876 2332 22221111111111121
Q ss_pred CCCCCCCccccCCHHHHHHHHHHH-hcCCcEEEEEecccCccc-ccccCCC-CCCCcEEEE--eCCchHHh---hhcCCC
Q 003753 208 GIDPDGDKWKNRDDQGRAAEIFRR-LSNKKFALLLDDLRERIE-LSEAGVP-VQNASKIVF--TTIFEEVC---SSMSVD 279 (798)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVlDdv~~~~~-~~~~~~p-~~~gs~iiv--TTR~~~v~---~~~~~~ 279 (798)
...... ..+++.+|++|+++.... .....++ ...|..++| ||.+.... ....-.
T Consensus 82 ------------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~ 143 (413)
T PRK13342 82 ------------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRA 143 (413)
T ss_pred ------------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhccc
Confidence 111111 245788999999986531 1112223 233454444 34443221 111223
Q ss_pred cceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHHH
Q 003753 280 WRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGSA 335 (798)
Q Consensus 280 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~ 335 (798)
..+.+.++++++.+.++.+.+.........--.+..+.|++.|+|.+..+..+...
T Consensus 144 ~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 144 QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 57899999999999999987643210000112456788999999998766554433
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.65 E-value=2e-08 Score=77.38 Aligned_cols=60 Identities=32% Similarity=0.457 Sum_probs=39.9
Q ss_pred CcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccc-ccccCCCCCCEEEcCCCCC
Q 003753 516 PRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLSNTNI 576 (798)
Q Consensus 516 ~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~Ls~~~i 576 (798)
|+|++|++++|.+..+|+..|.++++|++|++++| .++.+| ..+..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45666777777677777666677777777777766 666663 3556666677777666653
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.62 E-value=5.8e-09 Score=114.73 Aligned_cols=126 Identities=29% Similarity=0.294 Sum_probs=94.3
Q ss_pred ceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcC
Q 003753 493 EAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLS 572 (798)
Q Consensus 493 ~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls 572 (798)
.+..+++..+ .+..+-..+..+.+|..|++.+|.+..+... +..|.+|++|++++| .|+.+. .+..+..|+.|+++
T Consensus 73 ~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccc-cccccc-chhhccchhhheec
Confidence 4444555556 5665333467788888888888888877764 567888888888888 888874 37777888888888
Q ss_pred CCCCcccCccccCCCcccEEeCCCCCCcccccc-hhhcCCCCCccccccCCCCC
Q 003753 573 NTNICELPIGIKSCTHLRTLLLDGTENLKAIPV-GMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 573 ~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~ 625 (798)
+|.|..++ .+..+++|+.+++++|. +..++. . ...+.+|+.+.+.+|.+.
T Consensus 149 ~N~i~~~~-~~~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 149 GNLISDIS-GLESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred cCcchhcc-CCccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCchh
Confidence 88888776 56668888888888887 666665 2 367888888888887654
No 54
>PRK04195 replication factor C large subunit; Provisional
Probab=98.54 E-value=6.8e-06 Score=92.02 Aligned_cols=241 Identities=17% Similarity=0.190 Sum_probs=135.2
Q ss_pred CcccchhHHHHHHHHHhhc---C-CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIED---D-GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRS 205 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~---~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 205 (798)
.+++|.+..++++.+|+.. + ..+.+.|+|++|+||||+|+.+++... |+ ++-++.++..+...+ ..++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~-----~~-~ielnasd~r~~~~i-~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG-----WE-VIELNASDQRTADVI-ERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC-----CC-EEEEcccccccHHHH-HHHHH
Confidence 3699999999999999854 2 267899999999999999999988761 22 333455544333332 22222
Q ss_pred HcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc------ccccCCC-CCCCcEEEEeCCchH-Hhh-h-
Q 003753 206 RLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE------LSEAGVP-VQNASKIVFTTIFEE-VCS-S- 275 (798)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~------~~~~~~p-~~~gs~iivTTR~~~-v~~-~- 275 (798)
...... .....++-+||+|+++.... +..+.-. ...+..||+|+.+.. ... .
T Consensus 87 ~~~~~~------------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 87 EAATSG------------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HhhccC------------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhH
Confidence 211110 00113678999999986432 1111100 233445666664321 111 1
Q ss_pred cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHHHhcCCC---ChhHHHHHHHHH
Q 003753 276 MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGSAMASRR---DPDNWRYAIEEL 352 (798)
Q Consensus 276 ~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~---~~~~w~~~~~~l 352 (798)
-.....+.+.+++.++....+.+.+.......+ .+....|++.++|-.-.+......+.... +.+....+
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~---- 221 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTL---- 221 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHh----
Confidence 123456899999999999988887755443333 35678899999987765554444443322 12222211
Q ss_pred hcCCCCCCCcccchhhhhhhhhc-CCCchhHhHHHHhhcCCCCCceecHHHHHHHHHhcCCCcCC
Q 003753 353 QRYPSGFESIGTHVFPLLKFSYD-RLTSETHKTCFLYGSLFPRNQIIMKDELIELWIGEGLLRDS 416 (798)
Q Consensus 353 ~~~~~~~~~~~~~i~~~l~~sy~-~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~ 416 (798)
.. .....+++.++..-+. .-+.. ....+..+ .++. ..+-.|+.+.+....
T Consensus 222 ~~-----~d~~~~if~~l~~i~~~k~~~~-a~~~~~~~-------~~~~-~~i~~~l~en~~~~~ 272 (482)
T PRK04195 222 GR-----RDREESIFDALDAVFKARNADQ-ALEASYDV-------DEDP-DDLIEWIDENIPKEY 272 (482)
T ss_pred hc-----CCCCCCHHHHHHHHHCCCCHHH-HHHHHHcc-------cCCH-HHHHHHHHhcccccc
Confidence 10 1112356666665554 22222 32222211 1222 457789999987653
No 55
>PRK08727 hypothetical protein; Validated
Probab=98.53 E-value=1.6e-06 Score=87.06 Aligned_cols=164 Identities=13% Similarity=0.099 Sum_probs=97.5
Q ss_pred cccch-hHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 131 NIVGI-ESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 131 ~~vGr-~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
+|++. ...+..+...........+.|+|..|+|||+|++.+++... +....+.|+++.+ ....+.
T Consensus 20 ~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~----- 85 (233)
T PRK08727 20 SYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLR----- 85 (233)
T ss_pred hccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHH-----
Confidence 45543 34444444433333445799999999999999999998863 2223556665322 111110
Q ss_pred CCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc---cccccCCC-----CCCCcEEEEeCCch---------HH
Q 003753 210 DPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI---ELSEAGVP-----VQNASKIVFTTIFE---------EV 272 (798)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~---~~~~~~~p-----~~~gs~iivTTR~~---------~v 272 (798)
...+.+ .+.-+||+||+.... .+....+. ...|..||+|++.. .+
T Consensus 86 -----------------~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL 147 (233)
T PRK08727 86 -----------------DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDL 147 (233)
T ss_pred -----------------HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHH
Confidence 011111 133589999987442 22222112 23467799999843 22
Q ss_pred hhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHH
Q 003753 273 CSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLAL 329 (798)
Q Consensus 273 ~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 329 (798)
...+.....+++++++.++-.+++++++.......+ ++....|++.++|-.-.+
T Consensus 148 ~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 148 RSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 333444567899999999999999987754332222 346777888887665444
No 56
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=9.9e-06 Score=86.13 Aligned_cols=196 Identities=17% Similarity=0.247 Sum_probs=128.9
Q ss_pred cccchhHHHHHHHHHhhc----CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHH
Q 003753 131 NIVGIESRLSEVWRYIED----DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSR 206 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 206 (798)
.+.+|+++++++...|.. +.+.-+.|+|..|+|||+.++.+.+.........+ +++|++-......+++..|+++
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHHH
Confidence 488999999999998843 33445999999999999999999999843222233 7899999999999999999999
Q ss_pred cCCCCCCCccccCCHHHHHHHHHHHhcC--CcEEEEEecccCccccc-----cc-CCCCCCCcEE--EEeCCchHH----
Q 003753 207 LGIDPDGDKWKNRDDQGRAAEIFRRLSN--KKFALLLDDLRERIELS-----EA-GVPVQNASKI--VFTTIFEEV---- 272 (798)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~~l~~--~r~LlVlDdv~~~~~~~-----~~-~~p~~~gs~i--ivTTR~~~v---- 272 (798)
++..+. ......+....+.+.+.. +.+++|||+++...+-. .+ ..+....++| |..+-+...
T Consensus 97 ~~~~p~----~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 97 LGKVPL----TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred cCCCCC----CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 973331 345666777777777754 88999999998653221 11 2222224544 334443333
Q ss_pred ----hhhcCCCcceeccCCChHHHHHHHHHhccC---cccCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003753 273 ----CSSMSVDWRFKVDYLPQEEAWNLFRLKVTD---EVLNSHPEIRELAETVANMCGGLPLALVTI 332 (798)
Q Consensus 273 ----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~---~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 332 (798)
...++... +..++-+.+|-.+.+..++.. .....+.-++-++...++..|-.-.||..+
T Consensus 173 d~rv~s~l~~~~-I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 173 DPRVKSSLGPSE-IVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhccCcce-eeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 23333333 788999999999999888743 222222333333444444444444455444
No 57
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.47 E-value=2e-06 Score=86.52 Aligned_cols=173 Identities=18% Similarity=0.193 Sum_probs=110.0
Q ss_pred cccchhHHHH---HHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHc
Q 003753 131 NIVGIESRLS---EVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRL 207 (798)
Q Consensus 131 ~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 207 (798)
++||.+..+. -|.++++++....+.+||++|+||||||+.+.... +.+ ...||..|....-..-.+.|.++-
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~--SyrfvelSAt~a~t~dvR~ife~a 213 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKH--SYRFVELSATNAKTNDVRDIFEQA 213 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCC--ceEEEEEeccccchHHHHHHHHHH
Confidence 4555554332 24455567889999999999999999999998876 222 156777776655444445554432
Q ss_pred CCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc-cccccCCC-CCCCcEEEE--eCCchHH---hhhcCCCc
Q 003753 208 GIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI-ELSEAGVP-VQNASKIVF--TTIFEEV---CSSMSVDW 280 (798)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~-~~~~~~~p-~~~gs~iiv--TTR~~~v---~~~~~~~~ 280 (798)
. =...+.++|.+|.+|.|..-. ...+..+| -.+|.-++| ||.+++. +....-..
T Consensus 214 q-------------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~ 274 (554)
T KOG2028|consen 214 Q-------------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCR 274 (554)
T ss_pred H-------------------HHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccc
Confidence 1 112356789999999997653 23344577 677887776 7777654 22233456
Q ss_pred ceeccCCChHHHHHHHHHhcc---Cccc---CCCh----hHHHHHHHHHHHhCCCch
Q 003753 281 RFKVDYLPQEEAWNLFRLKVT---DEVL---NSHP----EIRELAETVANMCGGLPL 327 (798)
Q Consensus 281 ~~~l~~L~~~~a~~Lf~~~~~---~~~~---~~~~----~~~~~~~~i~~~c~glPL 327 (798)
++.|+.|..++...++.+... .... ..+. -...+.+-++..|.|-.-
T Consensus 275 VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 275 VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 789999999999998887432 2111 1111 123456667777777653
No 58
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=6.9e-06 Score=92.39 Aligned_cols=176 Identities=15% Similarity=0.189 Sum_probs=107.3
Q ss_pred CcccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcC-------------------CCCeEEEEE
Q 003753 130 NNIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSH-------------------KFGAVIMVK 189 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~ 189 (798)
.++||.+..++.|.+++..+++ +.+.++|..|+||||+|+.+.+...- .. .|.-+++++
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC-e~~~~~~PCG~C~sCr~I~~G~h~DviEID 94 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC-ETGVTSQPCGVCRACREIDEGRFVDYVEMD 94 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC-ccCCCCCCCcccHHHHHHhcCCCceEEEec
Confidence 3699999999999999987664 56679999999999999988876621 11 111122222
Q ss_pred cCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHH----hcCCcEEEEEecccCccc--ccccC--CC-CCCC
Q 003753 190 ASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRR----LSNKKFALLLDDLRERIE--LSEAG--VP-VQNA 260 (798)
Q Consensus 190 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~~~~--~~~~~--~p-~~~g 260 (798)
.+... ..++....+... ..++.-++|||+++.... +..+. +. ...+
T Consensus 95 Aas~r-------------------------gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 95 AASNR-------------------------GVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred ccccc-------------------------cHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 22111 122222222111 124556889999986532 22221 11 2346
Q ss_pred cEEEEeCCchH-Hhhh-cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc-hHHHHHHH
Q 003753 261 SKIVFTTIFEE-VCSS-MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP-LALVTIGS 334 (798)
Q Consensus 261 s~iivTTR~~~-v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~g~ 334 (798)
.++|+||++.+ +... ..-...+.+..++.++..+.+.+.+.......+ .+..+.|++.++|.. -|+..+-.
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id---~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE---PQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 77777666543 3211 123367899999999999999888765443222 356788999998865 45555433
No 59
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.45 E-value=4.3e-07 Score=82.58 Aligned_cols=116 Identities=18% Similarity=0.248 Sum_probs=78.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhh--cCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDM--SHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAE 227 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 227 (798)
+.+.+.|+|.+|+|||++++++.+..... ...-..++|+.+....+...+...|+.+++.... ...+...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~l~~~ 78 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK----SRQTSDELRSL 78 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS----STS-HHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc----ccCCHHHHHHH
Confidence 34689999999999999999998886321 0113457799998888999999999999998763 23567777788
Q ss_pred HHHHhcCCcE-EEEEecccCc-c--ccccc-CCCCCCCcEEEEeCCc
Q 003753 228 IFRRLSNKKF-ALLLDDLRER-I--ELSEA-GVPVQNASKIVFTTIF 269 (798)
Q Consensus 228 l~~~l~~~r~-LlVlDdv~~~-~--~~~~~-~~p~~~gs~iivTTR~ 269 (798)
+.+.+...+. +||+|+++.. . .+..+ .+-...+.++|+..+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 8888876554 9999999875 2 11111 0113566677766553
No 60
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.44 E-value=2.9e-08 Score=109.26 Aligned_cols=230 Identities=22% Similarity=0.246 Sum_probs=151.5
Q ss_pred CCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCccccCCCcccEEe
Q 003753 514 CSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKSCTHLRTLL 593 (798)
Q Consensus 514 ~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~ 593 (798)
.+..+..+.+..|.+..+-.. +..+++|.+|++.+| .|..+...+..+++|++|++++|.|..+. ++..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNH-LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhhcc-cccccceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhhe
Confidence 456777777888877764333 678999999999999 99988766889999999999999999987 688888899999
Q ss_pred CCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHH--hccCCCCCeeEEEEecccchhhhhhhhh
Q 003753 594 LDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEE--LESLKHLQEISVIILTIDSLNKLKSSLK 671 (798)
Q Consensus 594 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~--L~~l~~L~~L~l~~~~~~~~~~l~~~~~ 671 (798)
+++|. +..++. +..+++|+.+++++|.+. .+.. +..+.+|+.+.+..+....+..+....
T Consensus 147 l~~N~-i~~~~~--~~~l~~L~~l~l~~n~i~--------------~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~- 208 (414)
T KOG0531|consen 147 LSGNL-ISDISG--LESLKSLKLLDLSYNRIV--------------DIENDELSELISLEELDLGGNSIREIEGLDLLK- 208 (414)
T ss_pred eccCc-chhccC--CccchhhhcccCCcchhh--------------hhhhhhhhhccchHHHhccCCchhcccchHHHH-
Confidence 99998 888875 778999999999998765 2233 577778888887766554444332221
Q ss_pred hcccceeeee---ccCc----hhhhcc--CceEEeeccCCCCC-CcccCCCCccEEEeecCCchhhhhccccccCCCCcc
Q 003753 672 LQSCIRRLVM---GLPE----AIFSQD--LQDLSIINCSIKDL-TCIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEEN 741 (798)
Q Consensus 672 ~~~~L~~L~l---~lp~----~~lp~~--L~~L~L~~~~l~~l-~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~ 741 (798)
.+..+++ .+.. ..+ .. |+.+++.++.+... ..+..+.++..|++.++ .+..+ ..
T Consensus 209 ---~l~~~~l~~n~i~~~~~l~~~-~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n-~~~~~-----------~~ 272 (414)
T KOG0531|consen 209 ---KLVLLSLLDNKISKLEGLNEL-VMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSN-RISNL-----------EG 272 (414)
T ss_pred ---HHHHhhcccccceeccCcccc-hhHHHHHHhcccCccccccccccccccccccchhhc-ccccc-----------cc
Confidence 1111111 0000 111 22 77888888877666 45667777888887763 33322 23
Q ss_pred cccccccceeecCCccchhhcc--c--CCCCCCCcceeeeccC
Q 003753 742 LSMFLHLRQAYFFKLPNLKNIC--H--KAMAFPSLERIYVHGC 780 (798)
Q Consensus 742 ~~~~~~L~~L~L~~~~~l~~i~--~--~~~~~~~L~~L~l~~c 780 (798)
...++.+..+.....+...... . .....+.+..+.+...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (414)
T KOG0531|consen 273 LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELN 315 (414)
T ss_pred ccccchHHHhccCcchhcchhhhhccccccccccccccccccC
Confidence 4455556666555533221111 1 1334455555555443
No 61
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.44 E-value=6.3e-08 Score=96.94 Aligned_cols=14 Identities=21% Similarity=0.648 Sum_probs=7.2
Q ss_pred ccCceEEeeccCCC
Q 003753 690 QDLQDLSIINCSIK 703 (798)
Q Consensus 690 ~~L~~L~L~~~~l~ 703 (798)
++|+.|++++|.++
T Consensus 241 ~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 241 PHLRELNLGDCLLE 254 (382)
T ss_pred chheeecccccccc
Confidence 45555555555443
No 62
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.43 E-value=1.4e-07 Score=72.59 Aligned_cols=57 Identities=33% Similarity=0.441 Sum_probs=35.4
Q ss_pred ceeEEeCCCCccccccc-ccccCCCCCCEEEcCCCCCcccC-ccccCCCcccEEeCCCCC
Q 003753 541 ALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLSNTNICELP-IGIKSCTHLRTLLLDGTE 598 (798)
Q Consensus 541 ~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~Ls~~~i~~lp-~~i~~l~~L~~L~l~~~~ 598 (798)
+|++|++++| .++.+| ..+..+++|++|++++|.++.+| ..+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 5666666666 666665 34566666666666666666663 355666666666666654
No 63
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.43 E-value=7.6e-07 Score=86.48 Aligned_cols=46 Identities=26% Similarity=0.464 Sum_probs=33.1
Q ss_pred cccchhHHHHHHHHHhh---cCCceEEEEEecCCchHHHHHHHHHHHhh
Q 003753 131 NIVGIESRLSEVWRYIE---DDGVKIIGLYGVRGVGKSTLLKQLNDTFS 176 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (798)
.||||+++++++...|. ....+.+.|+|.+|+|||+|+++++....
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 38999999999999992 34578999999999999999999999884
No 64
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.42 E-value=3.5e-06 Score=84.73 Aligned_cols=168 Identities=14% Similarity=0.101 Sum_probs=100.7
Q ss_pred cccchh-HHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 131 NIVGIE-SRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 131 ~~vGr~-~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
.++|.. ..+..+.++........+.|+|+.|+|||+|++.+++... ..-..+.++.+.....
T Consensus 24 f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~-------------- 86 (235)
T PRK08084 24 FYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW-------------- 86 (235)
T ss_pred cccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh--------------
Confidence 344633 3444444444445557899999999999999999998763 2234566766543100
Q ss_pred CCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCc---ccccccCC----C-CCCC-cEEEEeCCch---------H
Q 003753 210 DPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRER---IELSEAGV----P-VQNA-SKIVFTTIFE---------E 271 (798)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~---~~~~~~~~----p-~~~g-s~iivTTR~~---------~ 271 (798)
...+ +.+.+.+ .-+|++||+... .+|....+ . ...| .++|+||+.. .
T Consensus 87 ----------~~~~----~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~ 151 (235)
T PRK08084 87 ----------FVPE----VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPD 151 (235)
T ss_pred ----------hhHH----HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHH
Confidence 0001 1111111 237899999754 23332211 1 2233 4799999754 3
Q ss_pred HhhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHH
Q 003753 272 VCSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIG 333 (798)
Q Consensus 272 v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 333 (798)
+...+....+++++++++++-.+++++++.......+ +++..-|++.+.|..-++..+-
T Consensus 152 L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 152 LASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHHH
Confidence 3445556678999999999999999886654332222 4567778888876655544443
No 65
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.39 E-value=2.1e-06 Score=82.45 Aligned_cols=171 Identities=16% Similarity=0.209 Sum_probs=90.7
Q ss_pred CcccchhHHHHHHHHHhh-----cCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIE-----DDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIR 204 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 204 (798)
.+|||.+.-++.+.-++. .+...-+.+||++|+||||||.-+++.. ...|. +++...- +
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i-~--------- 87 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAI-E--------- 87 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC------------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhh-h---------
Confidence 479999999988765553 2457789999999999999999999987 33332 2222110 0
Q ss_pred HHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc-c--------ccccCC----CCCC-----------C
Q 003753 205 SRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI-E--------LSEAGV----PVQN-----------A 260 (798)
Q Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~-~--------~~~~~~----p~~~-----------g 260 (798)
...+++..+. .+ +++-+|.+|.+.... . ++...+ -.+. =
T Consensus 88 ---------------k~~dl~~il~-~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 88 ---------------KAGDLAAILT-NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp ---------------SCHHHHHHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred ---------------hHHHHHHHHH-hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 0111111111 12 234466667776531 0 111100 0111 1
Q ss_pred cEEEEeCCchHHhhhcCCC--cceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHHHh
Q 003753 261 SKIVFTTIFEEVCSSMSVD--WRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGSAM 336 (798)
Q Consensus 261 s~iivTTR~~~v~~~~~~~--~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l 336 (798)
+-|=-|||...+..-+... -..+++..+.+|-.++..+.+..-.... -++.+.+|++.|.|-|--+.-+-...
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i---~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEI---DEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 2234588875554333322 2348999999999999988876543222 25679999999999996555444333
No 66
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.39 E-value=2.1e-06 Score=79.66 Aligned_cols=120 Identities=18% Similarity=0.117 Sum_probs=74.2
Q ss_pred cchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCC
Q 003753 133 VGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPD 212 (798)
Q Consensus 133 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 212 (798)
+|++..++++...+.....+.+.|+|.+|+||||+|+.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 47889999999998776678899999999999999999999872 223456677655543322221111000
Q ss_pred CCccccCCHHHHHHHHHHHhcCCcEEEEEecccCc-----ccccccCCC--C----CCCcEEEEeCCchH
Q 003753 213 GDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRER-----IELSEAGVP--V----QNASKIVFTTIFEE 271 (798)
Q Consensus 213 ~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-----~~~~~~~~p--~----~~gs~iivTTR~~~ 271 (798)
............++.++|+||++.. ..+...... . ..+..||+||....
T Consensus 72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223457789999999853 112111111 1 36778888887553
No 67
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.38 E-value=8.8e-08 Score=95.94 Aligned_cols=238 Identities=20% Similarity=0.152 Sum_probs=134.5
Q ss_pred CCCCcceeeeecccccc-----cccHHHHhcCCceeEEeCCCCc---cccccccc-------ccCCCCCCEEEcCCCCCc
Q 003753 513 PCSPRLLTLLVRYTMIK-----EFENKFFKSMYALRVLDSSQNA---KLSKLHVG-------EGELIDLQYLNLSNTNIC 577 (798)
Q Consensus 513 ~~~~~L~~L~l~~~~~~-----~l~~~~~~~l~~Lr~L~L~~~~---~i~~lp~~-------i~~L~~L~~L~Ls~~~i~ 577 (798)
.....+..|+|++|.+. .+.+ .+.+.+.||..++++-. ....+|+. +-..++|++||||+|-+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~-~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAK-VLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHH-HHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34455666667666443 2222 25666777777776540 11133332 334567888888887442
Q ss_pred -----ccCccccCCCcccEEeCCCCCCcccccch-------------hhcCCCCCccccccCCCCCCccCCCCCCCcccc
Q 003753 578 -----ELPIGIKSCTHLRTLLLDGTENLKAIPVG-------------MLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVL 639 (798)
Q Consensus 578 -----~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-------------~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 639 (798)
.+-.-+.+++.|++|+|.+|. +.....+ .+..-++|+++....|...... ...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~g--------a~~ 176 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGG--------ATA 176 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccccc--------HHH
Confidence 222345667788888888775 4332211 1345667888888877664210 112
Q ss_pred cHHHhccCCCCCeeEEEEecccc--hhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCC------CcccCC
Q 003753 640 LLEELESLKHLQEISVIILTIDS--LNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDL------TCIVYI 711 (798)
Q Consensus 640 ~~~~L~~l~~L~~L~l~~~~~~~--~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l------~~l~~l 711 (798)
.-..++..+.|+.+.+..+.... ...+..... .. ++|+.|+|.+|.++.- ..+..+
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~---------------~~-~~LevLdl~DNtft~egs~~LakaL~s~ 240 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALE---------------HC-PHLEVLDLRDNTFTLEGSVALAKALSSW 240 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHH---------------hC-CcceeeecccchhhhHHHHHHHHHhccc
Confidence 33446667788888887654432 222222221 22 7889999988855532 146678
Q ss_pred CCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchh----hcccCCCCCCCcceeeeccCC
Q 003753 712 PRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLK----NICHKAMAFPSLERIYVHGCP 781 (798)
Q Consensus 712 ~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~----~i~~~~~~~~~L~~L~l~~c~ 781 (798)
++|+.|++++|..-..-.. .+ .......+|+|+.|.+.+|.--. .+.......|.|+.|++++|.
T Consensus 241 ~~L~El~l~dcll~~~Ga~-a~----~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 241 PHLRELNLGDCLLENEGAI-AF----VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred chheeecccccccccccHH-HH----HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 8899999998863211100 00 00122358899999988854221 122233447888888888873
No 68
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.5e-08 Score=98.82 Aligned_cols=106 Identities=18% Similarity=0.108 Sum_probs=61.5
Q ss_pred Ccceeeeecccccccc-cHHHHhcCCceeEEeCCCCccccc-ccccccCCCCCCEEEcCCC-CCccc--CccccCCCccc
Q 003753 516 PRLLTLLVRYTMIKEF-ENKFFKSMYALRVLDSSQNAKLSK-LHVGEGELIDLQYLNLSNT-NICEL--PIGIKSCTHLR 590 (798)
Q Consensus 516 ~~L~~L~l~~~~~~~l-~~~~~~~l~~Lr~L~L~~~~~i~~-lp~~i~~L~~L~~L~Ls~~-~i~~l--p~~i~~l~~L~ 590 (798)
+.|+.|+|++..++.- -...++.|.+|+.|.|.|+ .+.. +-..|.+-.+|+.|+|+.| .+++. .--+.+++.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 3577777777655421 1233667778888888877 5552 3445666677888888877 45433 22456777888
Q ss_pred EEeCCCCCCcccccchhhcC-CCCCccccccCC
Q 003753 591 TLLLDGTENLKAIPVGMLSS-LLSLRVFSWVPT 622 (798)
Q Consensus 591 ~L~l~~~~~l~~lp~~~i~~-L~~L~~L~l~~~ 622 (798)
.|+++.|......-.-++.+ -.+|..|+++++
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 88888775322221111111 135556666654
No 69
>PRK09087 hypothetical protein; Validated
Probab=98.36 E-value=4.9e-06 Score=82.76 Aligned_cols=139 Identities=14% Similarity=0.109 Sum_probs=87.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFR 230 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 230 (798)
.+.+.|+|..|+|||+|++.++... . ..+++.. ....++..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-~-------~~~i~~~------~~~~~~~~------------------------- 84 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-D-------ALLIHPN------EIGSDAAN------------------------- 84 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-C-------CEEecHH------HcchHHHH-------------------------
Confidence 4679999999999999999887654 1 1133221 11111111
Q ss_pred HhcCCcEEEEEecccCcc----cccccCCC-CCCCcEEEEeCCc---------hHHhhhcCCCcceeccCCChHHHHHHH
Q 003753 231 RLSNKKFALLLDDLRERI----ELSEAGVP-VQNASKIVFTTIF---------EEVCSSMSVDWRFKVDYLPQEEAWNLF 296 (798)
Q Consensus 231 ~l~~~r~LlVlDdv~~~~----~~~~~~~p-~~~gs~iivTTR~---------~~v~~~~~~~~~~~l~~L~~~~a~~Lf 296 (798)
.+.+ -+|++||+.... .+-.+..- ...|..||+|++. +++...+.....++++++++++-.+++
T Consensus 85 ~~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL 162 (226)
T PRK09087 85 AAAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVI 162 (226)
T ss_pred hhhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHH
Confidence 1111 278889996532 11111101 3457789998873 334445556678999999999999999
Q ss_pred HHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHH
Q 003753 297 RLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIG 333 (798)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 333 (798)
++++.......+ +++..-|++.+.|..-++..+-
T Consensus 163 ~~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 163 FKLFADRQLYVD---PHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHHH
Confidence 998865433333 4567778888887776666543
No 70
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.35 E-value=7.4e-07 Score=89.36 Aligned_cols=97 Identities=13% Similarity=0.128 Sum_probs=64.8
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc--cCHHHHHHHHHHHcCCCCCCCc-ccc-CCHHHH
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE--LNIEKIQDVIRSRLGIDPDGDK-WKN-RDDQGR 224 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~-~~~-~~~~~~ 224 (798)
+....++|+|++|+|||||++++++... ..+|+.++|+.+..+ +++.++++.|...+-...-+.. ... .-....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~--~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAIT--KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc--cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 3456899999999999999999999873 358999999997776 7899999999433322211000 000 011112
Q ss_pred HHHHHHH-hcCCcEEEEEecccCc
Q 003753 225 AAEIFRR-LSNKKFALLLDDLRER 247 (798)
Q Consensus 225 ~~~l~~~-l~~~r~LlVlDdv~~~ 247 (798)
......+ -.+++.++++|++...
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHh
Confidence 2222222 2479999999998754
No 71
>PLN03150 hypothetical protein; Provisional
Probab=98.34 E-value=6.9e-07 Score=102.99 Aligned_cols=104 Identities=21% Similarity=0.307 Sum_probs=76.2
Q ss_pred cceeeeecccccc-cccHHHHhcCCceeEEeCCCCcccc-cccccccCCCCCCEEEcCCCCCc-ccCccccCCCcccEEe
Q 003753 517 RLLTLLVRYTMIK-EFENKFFKSMYALRVLDSSQNAKLS-KLHVGEGELIDLQYLNLSNTNIC-ELPIGIKSCTHLRTLL 593 (798)
Q Consensus 517 ~L~~L~l~~~~~~-~l~~~~~~~l~~Lr~L~L~~~~~i~-~lp~~i~~L~~L~~L~Ls~~~i~-~lp~~i~~l~~L~~L~ 593 (798)
.++.|+|++|.+. .+|.. +..+++|+.|+|++| .+. .+|..++.+++|++|+|++|++. .+|..+++|++|++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHH-HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 3677888888776 34444 788888888888888 665 67777888888888888888776 5677788888888888
Q ss_pred CCCCCCcccccchhhcC-CCCCccccccCCC
Q 003753 594 LDGTENLKAIPVGMLSS-LLSLRVFSWVPTR 623 (798)
Q Consensus 594 l~~~~~l~~lp~~~i~~-L~~L~~L~l~~~~ 623 (798)
|++|.....+|.. +.. +.++..+++.+|.
T Consensus 497 Ls~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 497 LNGNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcCCcccccCChH-HhhccccCceEEecCCc
Confidence 8888755577766 444 3456667766654
No 72
>PTZ00202 tuzin; Provisional
Probab=98.34 E-value=3.5e-05 Score=80.94 Aligned_cols=155 Identities=17% Similarity=0.174 Sum_probs=98.7
Q ss_pred CcccchhHHHHHHHHHhhc---CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIED---DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSR 206 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 206 (798)
+.|+||+.+..++...|.+ +..+++.|.|++|+|||||++.+.... . ....+++.. ...++++.|+.+
T Consensus 262 ~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l----~--~~qL~vNpr---g~eElLr~LL~A 332 (550)
T PTZ00202 262 RQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE----G--MPAVFVDVR---GTEDTLRSVVKA 332 (550)
T ss_pred cCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC----C--ceEEEECCC---CHHHHHHHHHHH
Confidence 4799999999999999954 235699999999999999999998654 1 113333333 679999999999
Q ss_pred cCCCCCCCccccCCHHHHHHHHHHHh-----c-CCcEEEEEecccCccccccc-----CCC-CCCCcEEEEeCCchHHhh
Q 003753 207 LGIDPDGDKWKNRDDQGRAAEIFRRL-----S-NKKFALLLDDLRERIELSEA-----GVP-VQNASKIVFTTIFEEVCS 274 (798)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~~l-----~-~~r~LlVlDdv~~~~~~~~~-----~~p-~~~gs~iivTTR~~~v~~ 274 (798)
||.+.. ....++...|.+.+ . +++.+||+- +.+-.++.+. .+- ...-|.|++----+.+.-
T Consensus 333 LGV~p~------~~k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 333 LGVPNV------EACGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred cCCCCc------ccHHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcch
Confidence 998542 22234444444433 2 566677664 2222222222 111 344567776554443321
Q ss_pred h---cCCCcceeccCCChHHHHHHHHHhc
Q 003753 275 S---MSVDWRFKVDYLPQEEAWNLFRLKV 300 (798)
Q Consensus 275 ~---~~~~~~~~l~~L~~~~a~~Lf~~~~ 300 (798)
. ..--..|-+++++.++|.+.-.+..
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 1 1222457899999999988877654
No 73
>PF13173 AAA_14: AAA domain
Probab=98.33 E-value=1.4e-06 Score=78.67 Aligned_cols=116 Identities=22% Similarity=0.192 Sum_probs=76.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFR 230 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 230 (798)
.+++.|.|+-|+||||++++++.+.. ....+++++..+....... +.+ ..+.+.+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~--------------------~~~-~~~~~~~ 56 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLA--------------------DPD-LLEYFLE 56 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHh--------------------hhh-hHHHHHH
Confidence 46899999999999999999998862 3456677765554221100 000 2233333
Q ss_pred HhcCCcEEEEEecccCcccccccCCC---CCCCcEEEEeCCchHHhhh------cCCCcceeccCCChHH
Q 003753 231 RLSNKKFALLLDDLRERIELSEAGVP---VQNASKIVFTTIFEEVCSS------MSVDWRFKVDYLPQEE 291 (798)
Q Consensus 231 ~l~~~r~LlVlDdv~~~~~~~~~~~p---~~~gs~iivTTR~~~v~~~------~~~~~~~~l~~L~~~~ 291 (798)
....++.+++||++....+|.....- ..++.+|++|+........ .+-...+++.||+-.|
T Consensus 57 ~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 57 LIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred hhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 33447888999999988777665222 3356899999998766532 1122457899998766
No 74
>PLN03025 replication factor C subunit; Provisional
Probab=98.32 E-value=8.8e-06 Score=86.11 Aligned_cols=175 Identities=17% Similarity=0.166 Sum_probs=104.4
Q ss_pred CcccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCC-eEEEEEcCCccCHHHHHHHHHHHcC
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFG-AVIMVKASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~l~ 208 (798)
.+++|.++.++.|.+++..+..+-+.++|++|+||||+|+.+++... ...|. .++-+..++...... .+.+++.+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~~-vr~~i~~~~ 89 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGIDV-VRNKIKMFA 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHHH-HHHHHHHHH
Confidence 36899999999998888877777788999999999999999988762 22232 222233333333222 222222111
Q ss_pred CCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc-----cccc-CCCCCCCcEEEEeCCch-HHhhhc-CCCc
Q 003753 209 IDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE-----LSEA-GVPVQNASKIVFTTIFE-EVCSSM-SVDW 280 (798)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-----~~~~-~~p~~~gs~iivTTR~~-~v~~~~-~~~~ 280 (798)
.... . .-.++.-++|+|+++.... +.+. .. ....+++++++... .+.... ....
T Consensus 90 ~~~~-----~------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~-~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 90 QKKV-----T------------LPPGRHKIVILDEADSMTSGAQQALRRTMEI-YSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred hccc-----c------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhc-ccCCceEEEEeCCccccchhHHHhhh
Confidence 0000 0 0013566999999986531 1111 11 23456777766432 221111 1224
Q ss_pred ceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchH
Q 003753 281 RFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLA 328 (798)
Q Consensus 281 ~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 328 (798)
.++++++++++....+.+.+.......+ .+....|++.++|-.-.
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 6899999999999998887755443322 34577888888886643
No 75
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=1.4e-05 Score=84.34 Aligned_cols=174 Identities=16% Similarity=0.179 Sum_probs=108.4
Q ss_pred cccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhh---hhcCCCCeEEEEEc-CCccCHHHHHHHHHH
Q 003753 131 NIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFS---DMSHKFGAVIMVKA-STELNIEKIQDVIRS 205 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~~f~~~~wv~v-s~~~~~~~~~~~i~~ 205 (798)
+++|-+..++.+.+++..+.. +...++|+.|+||||+|+.+++..- ....|+|...|... +....++++ +++.+
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~~ 83 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNIIE 83 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHHH
Confidence 588999999999999977654 5668999999999999999988641 12356676666542 333333342 23333
Q ss_pred HcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCc--cccccc--CCC-CCCCcEEEEeCCchHHh-hh-cCC
Q 003753 206 RLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRER--IELSEA--GVP-VQNASKIVFTTIFEEVC-SS-MSV 278 (798)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~~--~~p-~~~gs~iivTTR~~~v~-~~-~~~ 278 (798)
.+...+ ..+++=++|+|+++.. ..+..+ .+. ...++.+|++|.+.+.. .. ..-
T Consensus 84 ~~~~~p--------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 84 EVNKKP--------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHhcCc--------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 332221 1234556667766543 222222 111 35678888877665432 11 123
Q ss_pred CcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003753 279 DWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTI 332 (798)
Q Consensus 279 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 332 (798)
...+.+.++++++....+.+..... + .+.++.++..++|.|..+...
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~~~----~---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYNDI----K---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhcCC----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 4678999999999988887654311 1 234678899999998755433
No 76
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=3.1e-07 Score=89.76 Aligned_cols=210 Identities=18% Similarity=0.151 Sum_probs=119.3
Q ss_pred cceeeeecccccccccH--HHHhcCCceeEEeCCCCcccccc---cccccCCCCCCEEEcCCCCCc----ccCccccCCC
Q 003753 517 RLLTLLVRYTMIKEFEN--KFFKSMYALRVLDSSQNAKLSKL---HVGEGELIDLQYLNLSNTNIC----ELPIGIKSCT 587 (798)
Q Consensus 517 ~L~~L~l~~~~~~~l~~--~~~~~l~~Lr~L~L~~~~~i~~l---p~~i~~L~~L~~L~Ls~~~i~----~lp~~i~~l~ 587 (798)
-+..|.+.++.+..... .+-..+.+++.|||.+| .|..- -.-+.+|++|++|+|+.|++. .+| ..+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~ 121 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLK 121 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---cccc
Confidence 34455556665544332 22345678888888888 66643 223457888888888888553 444 3567
Q ss_pred cccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecccchhhhh
Q 003753 588 HLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDSLNKLK 667 (798)
Q Consensus 588 ~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~ 667 (798)
+|+.|.|.|+..-..-....+..++.++.|+++.|++..++.. ....+.. -+.+++|+...+.........
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~D-------d~c~e~~--s~~v~tlh~~~c~~~~w~~~~ 192 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLD-------DNCIEDW--STEVLTLHQLPCLEQLWLNKN 192 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccc-------ccccccc--chhhhhhhcCCcHHHHHHHHH
Confidence 8888888776521111122366778888888887755432211 1111111 112333333222211111111
Q ss_pred hhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCC---cccCCCCccEEEeecCCchhhhhccccccCCCCccccc
Q 003753 668 SSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLT---CIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSM 744 (798)
Q Consensus 668 ~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~---~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~ 744 (798)
... ..| |++..+.+..|-+++.. ....+|.+-.|+|+. +++.++.. ...+..
T Consensus 193 ~l~---------------r~F-pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~-~~idswas--------vD~Ln~ 247 (418)
T KOG2982|consen 193 KLS---------------RIF-PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGA-NNIDSWAS--------VDALNG 247 (418)
T ss_pred hHH---------------hhc-ccchheeeecCcccchhhcccCCCCCcchhhhhcc-cccccHHH--------HHHHcC
Confidence 111 235 88888888888655543 345677777788876 34444421 236678
Q ss_pred ccccceeecCCccchhhccc
Q 003753 745 FLHLRQAYFFKLPNLKNICH 764 (798)
Q Consensus 745 ~~~L~~L~L~~~~~l~~i~~ 764 (798)
||.|..|.+.+.|-+..+..
T Consensus 248 f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 248 FPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred CchhheeeccCCcccccccC
Confidence 99999999988887776655
No 77
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.30 E-value=1.2e-05 Score=86.30 Aligned_cols=191 Identities=13% Similarity=0.160 Sum_probs=107.4
Q ss_pred CcccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCC-eEEEEEcCCccCHHHHHHHHHH---
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFG-AVIMVKASTELNIEKIQDVIRS--- 205 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~--- 205 (798)
.+++|++..++.+.+++..+..+.+.++|+.|+||||+|+.+.+... ...+. ..+.+++++-.+ .....+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFD--QGKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhh--cchhhhhcCcc
Confidence 36899999999999999877766788999999999999999988762 22222 234454433110 00000100
Q ss_pred ---HcCCCCCCCccccCCHHHHHHHHHHHh------cCCcEEEEEecccCccc-----ccccCCCCCCCcEEEEeCCchH
Q 003753 206 ---RLGIDPDGDKWKNRDDQGRAAEIFRRL------SNKKFALLLDDLRERIE-----LSEAGVPVQNASKIVFTTIFEE 271 (798)
Q Consensus 206 ---~l~~~~~~~~~~~~~~~~~~~~l~~~l------~~~r~LlVlDdv~~~~~-----~~~~~~p~~~gs~iivTTR~~~ 271 (798)
.++... ............+.+.. .+.+-+||+||+..... +....-.....+++|+||....
T Consensus 91 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 91 FAHFLGTDK----RIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred hhhhhhhhh----hhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 000000 00001111222221111 23455899999975421 1111111234567777775432
Q ss_pred -Hhhhc-CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHH
Q 003753 272 -VCSSM-SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVT 331 (798)
Q Consensus 272 -v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 331 (798)
+.... .....+.+.+++.++...++.+.+.......+ .+..+.+++.++|.+-.+..
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 22111 12346788999999999999887654432222 34678888888887655443
No 78
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.30 E-value=4.3e-06 Score=96.49 Aligned_cols=164 Identities=23% Similarity=0.320 Sum_probs=96.4
Q ss_pred cccchhHHHH---HHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHc
Q 003753 131 NIVGIESRLS---EVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRL 207 (798)
Q Consensus 131 ~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 207 (798)
+++|.+..+. .+.+.+..+....+.++|++|+||||+|+.+++.. ...|. .++.+. ..+.+
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i~d--------- 92 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGVKD--------- 92 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhhHH---------
Confidence 6899988774 46666777777788999999999999999999876 33331 111110 00111
Q ss_pred CCCCCCCccccCCHHHHHHHHHHHh--cCCcEEEEEecccCcc--cccccCCC-CCCCcEEEE--eCCchH--Hhhh-cC
Q 003753 208 GIDPDGDKWKNRDDQGRAAEIFRRL--SNKKFALLLDDLRERI--ELSEAGVP-VQNASKIVF--TTIFEE--VCSS-MS 277 (798)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~~l--~~~r~LlVlDdv~~~~--~~~~~~~p-~~~gs~iiv--TTR~~~--v~~~-~~ 277 (798)
..+......+.+ .+++.+||+||++... .... ..+ ...|+.++| ||.+.. +... ..
T Consensus 93 -------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQda-LL~~lE~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 93 -------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDA-LLPWVENGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred -------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHH-HHHHhcCceEEEEEecCCChHhhhhhHhhc
Confidence 111112222222 2467899999997643 2222 223 334555555 344432 2111 11
Q ss_pred CCcceeccCCChHHHHHHHHHhccC-------cccCCChhHHHHHHHHHHHhCCCch
Q 003753 278 VDWRFKVDYLPQEEAWNLFRLKVTD-------EVLNSHPEIRELAETVANMCGGLPL 327 (798)
Q Consensus 278 ~~~~~~l~~L~~~~a~~Lf~~~~~~-------~~~~~~~~~~~~~~~i~~~c~glPL 327 (798)
-...+.+++++.++...++.+.+.. .....+ .+....|++.+.|..-
T Consensus 159 R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~---deaL~~La~~s~GD~R 212 (725)
T PRK13341 159 RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLE---PEAEKHLVDVANGDAR 212 (725)
T ss_pred cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCC---HHHHHHHHHhCCCCHH
Confidence 2357899999999999999887641 111111 3456778888877643
No 79
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.30 E-value=2e-06 Score=89.66 Aligned_cols=92 Identities=13% Similarity=0.160 Sum_probs=63.9
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCcc--CHHHHHHHHHHHcCCCCCCCccccCCHHH---
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTEL--NIEKIQDVIRSRLGIDPDGDKWKNRDDQG--- 223 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~--- 223 (798)
+.-...+|+|++|+||||||+++|+... ..+|+.++||.+.+.+ ++.++++.|...+-... .......
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~--~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st-----~d~~~~~~~~ 239 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSIT--TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST-----FDEPAERHVQ 239 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHH--hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC-----CCCCHHHHHH
Confidence 3446789999999999999999999984 3599999999999887 78888888863222111 1111111
Q ss_pred ----HHHHHHHH-hcCCcEEEEEecccCc
Q 003753 224 ----RAAEIFRR-LSNKKFALLLDDLRER 247 (798)
Q Consensus 224 ----~~~~l~~~-l~~~r~LlVlDdv~~~ 247 (798)
..+..+.+ -.+++++|++|++...
T Consensus 240 ~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 240 VAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 11111222 2679999999998654
No 80
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.29 E-value=1.4e-05 Score=79.24 Aligned_cols=177 Identities=18% Similarity=0.198 Sum_probs=100.4
Q ss_pred ccch-hHHHHHHHHHhhc-C--CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHc
Q 003753 132 IVGI-ESRLSEVWRYIED-D--GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRL 207 (798)
Q Consensus 132 ~vGr-~~~~~~l~~~L~~-~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 207 (798)
++|- .+..-.....+.+ . ....+.|+|..|+|||.|.+++++.... ...-..++|++ ..+....+...+
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~-~~~~~~v~y~~------~~~f~~~~~~~~ 83 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQK-QHPGKRVVYLS------AEEFIREFADAL 83 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHH-HCTTS-EEEEE------HHHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHh-ccccccceeec------HHHHHHHHHHHH
Confidence 4564 3333344444422 2 2356899999999999999999998742 12223466664 445555555544
Q ss_pred CCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc---cccccCCC-----CCCCcEEEEeCCch---------
Q 003753 208 GIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI---ELSEAGVP-----VQNASKIVFTTIFE--------- 270 (798)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~---~~~~~~~p-----~~~gs~iivTTR~~--------- 270 (798)
... . ...+++.++ .-=+|++||++... .|.+..+. ...|.+||+|++..
T Consensus 84 ~~~---------~----~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~ 149 (219)
T PF00308_consen 84 RDG---------E----IEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLP 149 (219)
T ss_dssp HTT---------S----HHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-H
T ss_pred Hcc---------c----chhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccCh
Confidence 321 1 123444444 34578899997653 22222221 34677999999643
Q ss_pred HHhhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003753 271 EVCSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTI 332 (798)
Q Consensus 271 ~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 332 (798)
++...+...-+++++++++++-.+++.+.+.......+ ++++.-|++.+.+..-.+..+
T Consensus 150 ~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 150 DLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELP---EEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S----HHHHHHHHHHTTSSHHHHHHH
T ss_pred hhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCc---HHHHHHHHHhhcCCHHHHHHH
Confidence 22334455667999999999999999998876554333 345666777766554444433
No 81
>PRK05642 DNA replication initiation factor; Validated
Probab=98.27 E-value=1.3e-05 Score=80.36 Aligned_cols=147 Identities=19% Similarity=0.252 Sum_probs=89.7
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRR 231 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 231 (798)
..+.|+|..|+|||.|++.+++... ..-..++|++..+ +... ...+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~------~~~~----------------------~~~~~~~ 94 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAE------LLDR----------------------GPELLDN 94 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHH------HHhh----------------------hHHHHHh
Confidence 5789999999999999999988762 2224567776432 1110 0112222
Q ss_pred hcCCcEEEEEecccCc---ccccccCCC-----CCCCcEEEEeCCchHH---------hhhcCCCcceeccCCChHHHHH
Q 003753 232 LSNKKFALLLDDLRER---IELSEAGVP-----VQNASKIVFTTIFEEV---------CSSMSVDWRFKVDYLPQEEAWN 294 (798)
Q Consensus 232 l~~~r~LlVlDdv~~~---~~~~~~~~p-----~~~gs~iivTTR~~~v---------~~~~~~~~~~~l~~L~~~~a~~ 294 (798)
+.+-. +||+||+... ..|....+. ...|.++|+|++...- ...+....+++++++++++-.+
T Consensus 95 ~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~ 173 (234)
T PRK05642 95 LEQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLR 173 (234)
T ss_pred hhhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHH
Confidence 33222 6789999743 233332221 3456789998875322 2223344678999999999999
Q ss_pred HHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHH
Q 003753 295 LFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIG 333 (798)
Q Consensus 295 Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 333 (798)
++++++.......+ +++..-|++.+.|..-++..+-
T Consensus 174 il~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 174 ALQLRASRRGLHLT---DEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHH
Confidence 99866654332222 3567777777776655544443
No 82
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.6e-05 Score=88.45 Aligned_cols=191 Identities=16% Similarity=0.177 Sum_probs=105.6
Q ss_pred cccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHH---
Q 003753 131 NIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSR--- 206 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~--- 206 (798)
++||-+..++.|.+++..+++ +.+.++|..|+||||+|+.+.+...- ..-+...-+. +..+..-...+.|...
T Consensus 17 dVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC--~~p~~~~g~~-~~PCG~C~sC~~I~aG~hp 93 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC--TGADGEGGIT-AQPCGQCRACTEIDAGRFV 93 (700)
T ss_pred HHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC--CCccccccCC-CCCCcccHHHHHHHcCCCC
Confidence 699999999999999987765 45689999999999999999887621 0000000000 0000000111111100
Q ss_pred --cCCCCCCCccccCCHHHHHHHHHHH----hcCCcEEEEEecccCcc--c---cccc-CCCCCCCcE-EEEeCCchHHh
Q 003753 207 --LGIDPDGDKWKNRDDQGRAAEIFRR----LSNKKFALLLDDLRERI--E---LSEA-GVPVQNASK-IVFTTIFEEVC 273 (798)
Q Consensus 207 --l~~~~~~~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~~~--~---~~~~-~~p~~~gs~-iivTTR~~~v~ 273 (798)
+.+... .....++..+.+... ..+++-++|+|+++... . +.+. .-| ..+.+ |++||....+.
T Consensus 94 DviEIdAa----s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP-P~~v~FILaTtep~kLl 168 (700)
T PRK12323 94 DYIEMDAA----SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP-PEHVKFILATTDPQKIP 168 (700)
T ss_pred cceEeccc----ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC-CCCceEEEEeCChHhhh
Confidence 000000 011222222222221 23566799999998653 1 1221 122 23445 45566555553
Q ss_pred hhc-CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003753 274 SSM-SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTI 332 (798)
Q Consensus 274 ~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 332 (798)
..+ .-...+.+..++.++..+.+.+.+........ .+..+.|++.++|.|.-...+
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d---~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE---VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 222 12357899999999999998877654332222 345678999999998644433
No 83
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=2.4e-05 Score=87.17 Aligned_cols=189 Identities=15% Similarity=0.130 Sum_probs=104.7
Q ss_pred CcccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcC
Q 003753 130 NNIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 208 (798)
.++||.+..++.|.+++..++. +.+.++|+.|+||||+|+.+++...- .. ++.. ..+..-...+.|...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC-~~------~~~~-~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC-ET------GVTS-TPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC-Cc------CCCC-CCCccCHHHHHHhcCCC
Confidence 3699999999999999987664 57799999999999999999887621 00 1100 00010011111111000
Q ss_pred CCCCC-CccccCCHHHHHHHHHH----HhcCCcEEEEEecccCcc--ccccc----CCCCCCCcEEEEeCCch-HHhhh-
Q 003753 209 IDPDG-DKWKNRDDQGRAAEIFR----RLSNKKFALLLDDLRERI--ELSEA----GVPVQNASKIVFTTIFE-EVCSS- 275 (798)
Q Consensus 209 ~~~~~-~~~~~~~~~~~~~~l~~----~l~~~r~LlVlDdv~~~~--~~~~~----~~p~~~gs~iivTTR~~-~v~~~- 275 (798)
...-. +.......++....+.. ...+++-++|+|++.... ....+ .- ...+.++|++|.+. .+...
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE-PP~~v~FILaTtd~~kIp~TI 165 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE-PPEHVKFLFATTDPQKLPITV 165 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-CCCCcEEEEEECChHhhhHHH
Confidence 00000 00001112222111111 123566789999998653 11111 11 23455677666543 33211
Q ss_pred cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHH
Q 003753 276 MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALV 330 (798)
Q Consensus 276 ~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 330 (798)
......+++.+++.++..+.+.+.+........ .+....|++.++|.+-.+.
T Consensus 166 lSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 166 ISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 223467899999999999999887755433222 3457789999999774443
No 84
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.25 E-value=2.4e-05 Score=83.36 Aligned_cols=176 Identities=16% Similarity=0.218 Sum_probs=103.1
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCe-EEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGA-VIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
+++|+++.++.+..++..+..+.+.++|..|+||||+|+.+++... ...+.. .+-+..+.......+...+.+....
T Consensus 18 ~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~ 95 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWRENFLELNASDERGIDVIRNKIKEFART 95 (319)
T ss_pred HhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCccccceEEeccccccchHHHHHHHHHHHhc
Confidence 6899999999999999877777789999999999999999988762 222221 1122222222222111111111100
Q ss_pred CCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc-----ccccCCCCCCCcEEEEeCCch-HHhhhc-CCCcce
Q 003753 210 DPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE-----LSEAGVPVQNASKIVFTTIFE-EVCSSM-SVDWRF 282 (798)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-----~~~~~~p~~~gs~iivTTR~~-~v~~~~-~~~~~~ 282 (798)
.+ .....+-++++|+++.... +....-.....+++|+++... .+.... .....+
T Consensus 96 ~~-------------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 96 AP-------------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred CC-------------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhee
Confidence 00 0012356899999865421 221111123446677666432 221111 122367
Q ss_pred eccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHH
Q 003753 283 KVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALV 330 (798)
Q Consensus 283 ~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 330 (798)
++.++++++....+.+.+.......+ .+....+++.++|.+--+.
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 99999999998888887765433222 3467888999998876543
No 85
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.24 E-value=0.00014 Score=83.46 Aligned_cols=200 Identities=15% Similarity=0.076 Sum_probs=111.4
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCC---CeEEEEEcCC---ccCHHHHHHH--
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKF---GAVIMVKAST---ELNIEKIQDV-- 202 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~vs~---~~~~~~~~~~-- 202 (798)
+++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.... ...+ ...-|+.+.. ..+...+...
T Consensus 155 ~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~-~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ll 233 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKK-LKHTPFAEDAPFVEVDGTTLRWDPREVTNPLL 233 (615)
T ss_pred hceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhh-ccCCcccCCCCeEEEechhccCCHHHHhHHhc
Confidence 68999999999988887666778999999999999999999877622 2222 1233444332 1122222111
Q ss_pred -------------HHHHcCCCCC----------C----CccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc--ccccc
Q 003753 203 -------------IRSRLGIDPD----------G----DKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI--ELSEA 253 (798)
Q Consensus 203 -------------i~~~l~~~~~----------~----~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~--~~~~~ 253 (798)
.+...+.... + +..... ....+..+.+.+.++++.++-|+.|... .|..+
T Consensus 234 g~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~i 312 (615)
T TIGR02903 234 GSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYI 312 (615)
T ss_pred CCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccchhh
Confidence 1122221100 0 000111 2235677888888899998877666542 23222
Q ss_pred --CCC-CCCCcEEEE--eCCchHH-hhhc-CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc
Q 003753 254 --GVP-VQNASKIVF--TTIFEEV-CSSM-SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP 326 (798)
Q Consensus 254 --~~p-~~~gs~iiv--TTR~~~v-~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 326 (798)
.+. ..+...+++ ||++... ...+ .....+.+.+++.+|.++++.+.+........ .++.+.|.+.+..-+
T Consensus 313 k~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ys~~gR 389 (615)
T TIGR02903 313 KKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARYTIEGR 389 (615)
T ss_pred hhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHCCCcHH
Confidence 222 233334444 5664432 1111 12235788999999999999987754322122 234445555444445
Q ss_pred hHHHHHHHH
Q 003753 327 LALVTIGSA 335 (798)
Q Consensus 327 Lai~~~g~~ 335 (798)
-|+..++..
T Consensus 390 raln~L~~~ 398 (615)
T TIGR02903 390 KAVNILADV 398 (615)
T ss_pred HHHHHHHHH
Confidence 555555433
No 86
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.23 E-value=7.3e-08 Score=104.73 Aligned_cols=127 Identities=24% Similarity=0.251 Sum_probs=93.0
Q ss_pred CcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCc-cccCCCcccEEeC
Q 003753 516 PRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPI-GIKSCTHLRTLLL 594 (798)
Q Consensus 516 ~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~l 594 (798)
..|.+.++++|.+..+..+ +.-++.|+.|||++| +++..- .+..|++|++|||++|.+..+|. ....+. |+.|++
T Consensus 164 n~L~~a~fsyN~L~~mD~S-Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDES-LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHHhHHHH-HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 3455666666666655555 677888999999999 787764 67888899999999998888874 233444 889999
Q ss_pred CCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecc
Q 003753 595 DGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTI 660 (798)
Q Consensus 595 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 660 (798)
++|. ++.+-. +.+|.+|+.|++++|-+. +-..+.-|..|..|+.|.+.+|..
T Consensus 240 rnN~-l~tL~g--ie~LksL~~LDlsyNll~-----------~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNA-LTTLRG--IENLKSLYGLDLSYNLLS-----------EHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccH-HHhhhh--HHhhhhhhccchhHhhhh-----------cchhhhHHHHHHHHHHHhhcCCcc
Confidence 9887 777763 788999999999888765 234455666777777777776543
No 87
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2e-05 Score=90.55 Aligned_cols=175 Identities=17% Similarity=0.211 Sum_probs=104.5
Q ss_pred CcccchhHHHHHHHHHhhcCCceE-EEEEecCCchHHHHHHHHHHHhhhhcCC-------------------CCeEEEEE
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVKI-IGLYGVRGVGKSTLLKQLNDTFSDMSHK-------------------FGAVIMVK 189 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~ 189 (798)
.++||.+..++.|.+++..+++.- +.++|+.|+||||+|+.+++.... ... |.-++++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc-e~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC-EQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC-ccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 369999999999999998777654 589999999999999999887621 111 11112221
Q ss_pred cCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH-HHhcCCcEEEEEecccCcc--cccc---c-CCCCCCCcE
Q 003753 190 ASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF-RRLSNKKFALLLDDLRERI--ELSE---A-GVPVQNASK 262 (798)
Q Consensus 190 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~l~~~r~LlVlDdv~~~~--~~~~---~-~~p~~~gs~ 262 (798)
.+....+.. ..++...+. ....+++-++|+|++.... .... . -- .....+
T Consensus 95 Aas~~kVDd----------------------IReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE-PP~~vr 151 (944)
T PRK14949 95 AASRTKVDD----------------------TRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE-PPEHVK 151 (944)
T ss_pred cccccCHHH----------------------HHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-cCCCeE
Confidence 111111111 111111111 1124677899999998653 1121 1 11 234455
Q ss_pred EEEeC-CchHHhhh-cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHH
Q 003753 263 IVFTT-IFEEVCSS-MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVT 331 (798)
Q Consensus 263 iivTT-R~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 331 (798)
+|++| ....+... ..-...|++.+|+.++..+.+.+.+........ .+....|++.++|.|--+..
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~e---deAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFE---AEALTLLAKAANGSMRDALS 219 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 55544 44444322 123367999999999999999887654322221 35678899999998854433
No 88
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=4.1e-05 Score=85.12 Aligned_cols=187 Identities=15% Similarity=0.112 Sum_probs=105.8
Q ss_pred cccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 131 NIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
+++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++.... .+.+...+|.|.+... +..........+..
T Consensus 15 dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c-~~~~~~~cg~C~sc~~-i~~~~h~dv~el~~ 92 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC-SGEDPKPCGECESCLA-VRRGAHPDVLEIDA 92 (504)
T ss_pred HhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc-cCCCCCCCCcChhhHH-HhcCCCCceEEecc
Confidence 689999999999999877665 45699999999999999999887621 1222223333321100 00000000000000
Q ss_pred CCCCCccccCCHHHHHHHHHHHh-----cCCcEEEEEecccCcc--cccccC--CC-CCCCcEEEEeC-CchHHhhhc-C
Q 003753 210 DPDGDKWKNRDDQGRAAEIFRRL-----SNKKFALLLDDLRERI--ELSEAG--VP-VQNASKIVFTT-IFEEVCSSM-S 277 (798)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~--~~~~~~--~p-~~~gs~iivTT-R~~~v~~~~-~ 277 (798)
. .....+. ++.+.+.+ .+++-++|+|+++... .+..+. +. ...++.+|++| ....+.... .
T Consensus 93 ~------~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 93 A------SNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred c------ccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 0 0111111 12222222 3466799999997543 122221 11 22344555544 433432222 2
Q ss_pred CCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHH
Q 003753 278 VDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLAL 329 (798)
Q Consensus 278 ~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 329 (798)
....+++.+++.++..+.+.+.+.......+ .+....|++.++|.+--+
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDA 214 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 3457899999999999999988755433222 356788999999988544
No 89
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.21 E-value=4.2e-06 Score=88.36 Aligned_cols=64 Identities=20% Similarity=0.226 Sum_probs=38.0
Q ss_pred HhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCC-CCcccCccccCCCcccEEeCCCCCCcccccc
Q 003753 536 FKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNT-NICELPIGIKSCTHLRTLLLDGTENLKAIPV 605 (798)
Q Consensus 536 ~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~-~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 605 (798)
+..+.+++.|++++| .++.+|. + ..+|+.|.+++| .++.+|..+. .+|++|++++|..+..+|.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 334566677777776 6666662 1 224677777665 5555664442 4677777777654555554
No 90
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=7e-05 Score=80.60 Aligned_cols=188 Identities=16% Similarity=0.184 Sum_probs=102.6
Q ss_pred CcccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcC
Q 003753 130 NNIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 208 (798)
.+++|.+..++.+.+.+..+.. ..+.++|+.|+||||+|+.+++.... ..... ......-....++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c-~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC-QNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC-CCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 3699999999999999877654 56789999999999999999887621 00000 000000001111111000
Q ss_pred CCCCCCcc-ccCCHHHHHHHHHHHh-----cCCcEEEEEecccCccc--cccc---CCCCCCCcEEEEeCCch-HHhhhc
Q 003753 209 IDPDGDKW-KNRDDQGRAAEIFRRL-----SNKKFALLLDDLRERIE--LSEA---GVPVQNASKIVFTTIFE-EVCSSM 276 (798)
Q Consensus 209 ~~~~~~~~-~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~~--~~~~---~~p~~~gs~iivTTR~~-~v~~~~ 276 (798)
......+. .....++ ...+.+.+ .+++-++|+|+++.... +..+ .-......++|++|.+. .+....
T Consensus 88 ~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 88 LDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTI 166 (363)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHH
Confidence 00000000 0011111 12222221 23556999999986532 2221 11123455666666543 332221
Q ss_pred -CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHH
Q 003753 277 -SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLAL 329 (798)
Q Consensus 277 -~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 329 (798)
+-...+++.+++.++..+.+.+.+.......+ .+.+..|++.++|.|-.+
T Consensus 167 ~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~---~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 167 LSRCLQFKLKIISEEKIFNFLKYILIKESIDTD---EYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 22357899999999999888876654332222 345778999999987543
No 91
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.19 E-value=2.6e-05 Score=78.38 Aligned_cols=167 Identities=13% Similarity=0.124 Sum_probs=95.3
Q ss_pred ccc-chhHHH-HHHHHHhhc-CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHc
Q 003753 131 NIV-GIESRL-SEVWRYIED-DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRL 207 (798)
Q Consensus 131 ~~v-Gr~~~~-~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 207 (798)
+|+ |.+... ..+.++... .....+.|+|..|+|||+||+.+++... ... ....+++..... ..+
T Consensus 19 ~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~-~~~~~i~~~~~~------~~~---- 85 (227)
T PRK08903 19 NFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS--YGG-RNARYLDAASPL------LAF---- 85 (227)
T ss_pred ccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEehHHhH------HHH----
Confidence 344 554433 444444332 3456789999999999999999998762 222 234455433211 000
Q ss_pred CCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccccc--cc--CCC--CCCCc-EEEEeCCchHHhh------
Q 003753 208 GIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIELS--EA--GVP--VQNAS-KIVFTTIFEEVCS------ 274 (798)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~--~~--~~p--~~~gs-~iivTTR~~~v~~------ 274 (798)
... ...-++|+||+....... .+ .+. ...+. .+|+|++......
T Consensus 86 ----------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L 142 (227)
T PRK08903 86 ----------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDL 142 (227)
T ss_pred ----------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHH
Confidence 011 233478899997543211 11 111 22344 4677776433221
Q ss_pred --hcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHHHh
Q 003753 275 --SMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGSAM 336 (798)
Q Consensus 275 --~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l 336 (798)
.+.....+.++++++++-..++.+.+.......+ ++....+++.+.|.+..+..+-..+
T Consensus 143 ~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 143 RTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2223467899999998877777765433222222 3567788888999998877776554
No 92
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.17 E-value=1.2e-05 Score=86.95 Aligned_cols=166 Identities=19% Similarity=0.276 Sum_probs=98.5
Q ss_pred cccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHH
Q 003753 131 NIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIE 197 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 197 (798)
++.|+++.++++.+.+.. ...+-+.++|++|+|||++|+.+++.. ...| +.+.. .
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~----~ 190 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG----S 190 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----H
Confidence 688999999999887732 124568999999999999999999876 2333 22211 1
Q ss_pred HHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHh-cCCcEEEEEecccCcc----------------cccccC-----C
Q 003753 198 KIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRL-SNKKFALLLDDLRERI----------------ELSEAG-----V 255 (798)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~----------------~~~~~~-----~ 255 (798)
.+.... .+ ........+.+.. ...+.+|++|+++... .+..+. +
T Consensus 191 ~l~~~~---~g-----------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 256 (364)
T TIGR01242 191 ELVRKY---IG-----------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF 256 (364)
T ss_pred HHHHHh---hh-----------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC
Confidence 111110 00 1111222222222 3467899999987531 011110 1
Q ss_pred CCCCCcEEEEeCCchHH-----hhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc
Q 003753 256 PVQNASKIVFTTIFEEV-----CSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP 326 (798)
Q Consensus 256 p~~~gs~iivTTR~~~v-----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 326 (798)
....+.+||.||...+. .........+.++..+.++..++|+.++.........+ ...+++.+.|..
T Consensus 257 ~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 257 DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 12346778888875432 22112345689999999999999998875543222222 456777777764
No 93
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=5.2e-05 Score=83.59 Aligned_cols=183 Identities=20% Similarity=0.258 Sum_probs=103.8
Q ss_pred CcccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcC------------------CCCeEEEEEc
Q 003753 130 NNIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSH------------------KFGAVIMVKA 190 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~v 190 (798)
.++||.+.....|...+..+.. +.+.++|++|+||||+|+.+++....... .+..++.+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 3699999998888888877665 56899999999999999999887521000 0011222222
Q ss_pred CCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc--ccccc--CCC-CCCCcEEEE
Q 003753 191 STELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI--ELSEA--GVP-VQNASKIVF 265 (798)
Q Consensus 191 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~--~~~~~--~~p-~~~gs~iiv 265 (798)
+....+.++ ++|.+.... .-..+++-++|+|+++... ....+ .+. ......+|+
T Consensus 94 a~~~gid~i-R~i~~~~~~--------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Il 152 (472)
T PRK14962 94 ASNRGIDEI-RKIRDAVGY--------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVL 152 (472)
T ss_pred cccCCHHHH-HHHHHHHhh--------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 222122211 112111110 0123466799999987542 11111 011 123344444
Q ss_pred -eCCchHHhhhc-CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhC-CCchHHHHHHHHh
Q 003753 266 -TTIFEEVCSSM-SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCG-GLPLALVTIGSAM 336 (798)
Q Consensus 266 -TTR~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~-glPLai~~~g~~l 336 (798)
||....+.... .....+.+.+++.++....+.+.+.......+ .+....|++.++ +++.|+..+-...
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44333343222 23457899999999999988887754332222 345677888775 4467777665543
No 94
>PLN03150 hypothetical protein; Provisional
Probab=98.17 E-value=2.7e-06 Score=98.06 Aligned_cols=109 Identities=19% Similarity=0.253 Sum_probs=90.7
Q ss_pred ceeeEEeecCCCCC-CCCCCCCCCCcceeeeecccccc-cccHHHHhcCCceeEEeCCCCcccc-cccccccCCCCCCEE
Q 003753 493 EAVRVSLWRSPSID-SLSPTPPCSPRLLTLLVRYTMIK-EFENKFFKSMYALRVLDSSQNAKLS-KLHVGEGELIDLQYL 569 (798)
Q Consensus 493 ~l~~lsl~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~l~~Lr~L~L~~~~~i~-~lp~~i~~L~~L~~L 569 (798)
.++.|.+.++ .+. .+|..+..+++|+.|+|++|.+. .+|.. ++.+++|++|+|++| .+. .+|+.+++|++|++|
T Consensus 419 ~v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEE
Confidence 4778888888 554 67777789999999999999887 56655 899999999999999 777 689999999999999
Q ss_pred EcCCCCCc-ccCccccCC-CcccEEeCCCCCCccccc
Q 003753 570 NLSNTNIC-ELPIGIKSC-THLRTLLLDGTENLKAIP 604 (798)
Q Consensus 570 ~Ls~~~i~-~lp~~i~~l-~~L~~L~l~~~~~l~~lp 604 (798)
+|++|++. .+|..++.+ .++..+++.+|..+...|
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999887 778887764 567889998887544443
No 95
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=0.00011 Score=78.53 Aligned_cols=194 Identities=11% Similarity=0.052 Sum_probs=106.9
Q ss_pred CcccchhHHHHHHHHHhhcCCce-EEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEE---EEcCCccCHHHHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVK-IIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIM---VKASTELNIEKIQDVIRS 205 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w---v~vs~~~~~~~~~~~i~~ 205 (798)
.+++|.+..++.+.+.+..+... .+.++|+.|+||+|+|..+.+..-- ......... .........-..-+.|..
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc-~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~ 97 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLA-TPPPGGDGAVPPPTSLAIDPDHPVARRIAA 97 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhC-CCCCCCCccccccccccCCCCChHHHHHHc
Confidence 47999999999999999887654 6889999999999999988877621 110000000 000000000011122211
Q ss_pred HcCCCC------C-CCc----cccCCHHHHHHHHHHHhc-----CCcEEEEEecccCccc-----ccccCCCCCCCcEEE
Q 003753 206 RLGIDP------D-GDK----WKNRDDQGRAAEIFRRLS-----NKKFALLLDDLRERIE-----LSEAGVPVQNASKIV 264 (798)
Q Consensus 206 ~l~~~~------~-~~~----~~~~~~~~~~~~l~~~l~-----~~r~LlVlDdv~~~~~-----~~~~~~p~~~gs~ii 264 (798)
. ..+. . .+. ......++ ++.+.+++. +++-++|+||++.... +.+..-....++.+|
T Consensus 98 ~-~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~I 175 (365)
T PRK07471 98 G-AHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFL 175 (365)
T ss_pred c-CCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 0 0000 0 000 01112233 344444443 4667999999876531 111111123455566
Q ss_pred EeCCch-HHhhh-cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHH
Q 003753 265 FTTIFE-EVCSS-MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIG 333 (798)
Q Consensus 265 vTTR~~-~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 333 (798)
++|.+. .+... ......+.+.+++.++..+++.+..... . .+....+++.++|.|.....+.
T Consensus 176 L~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~----~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 176 LVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL----P---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC----C---HHHHHHHHHHcCCCHHHHHHHh
Confidence 666554 33222 2234678999999999999998764321 1 1122678999999998665543
No 96
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=0.0001 Score=81.56 Aligned_cols=191 Identities=17% Similarity=0.113 Sum_probs=105.0
Q ss_pred cccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCe-EEEEEcCCccCHHHHHHHHHHHcC
Q 003753 131 NIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGA-VIMVKASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~vs~~~~~~~~~~~i~~~l~ 208 (798)
+++|-+..+..+...+..+.. +.+.++|+.|+||||+|+.+++.... ...... -.+..+... .....|.....
T Consensus 22 dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc-~~~~~~~~~~~~C~~C----~~C~~i~~~~h 96 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC-SALITENTTIKTCEQC----TNCISFNNHNH 96 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC-ccccccCcCcCCCCCC----hHHHHHhcCCC
Confidence 689999999999888876654 57889999999999999999887621 111000 000000000 00111110000
Q ss_pred CCCCC-CccccCCHHHHHHHHHH----HhcCCcEEEEEecccCcc--cccccC--CC-CCCCcEEE-EeCCchHHhhhc-
Q 003753 209 IDPDG-DKWKNRDDQGRAAEIFR----RLSNKKFALLLDDLRERI--ELSEAG--VP-VQNASKIV-FTTIFEEVCSSM- 276 (798)
Q Consensus 209 ~~~~~-~~~~~~~~~~~~~~l~~----~l~~~r~LlVlDdv~~~~--~~~~~~--~p-~~~gs~ii-vTTR~~~v~~~~- 276 (798)
..... +.......++....+.. -+.+++-++|+|+++... .+..+. +. ....+.+| +||+...+....
T Consensus 97 ~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~ 176 (507)
T PRK06645 97 PDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATII 176 (507)
T ss_pred CcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHH
Confidence 00000 00001122222222211 124567799999998642 222221 11 23445554 466655554332
Q ss_pred CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHH
Q 003753 277 SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLAL 329 (798)
Q Consensus 277 ~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 329 (798)
.....+++.+++.++....+.+.+.......+ .+....|++.++|.+--+
T Consensus 177 SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 177 SRCQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDA 226 (507)
T ss_pred hcceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 23457899999999999999988865442222 345677999999877433
No 97
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.11 E-value=2.9e-07 Score=94.28 Aligned_cols=108 Identities=16% Similarity=0.099 Sum_probs=68.6
Q ss_pred Ccceeeeecccc-ccccc-HHHHhcCCceeEEeCCCCcccccc--cccccCCCCCCEEEcCCC-CCccc--CccccCCCc
Q 003753 516 PRLLTLLVRYTM-IKEFE-NKFFKSMYALRVLDSSQNAKLSKL--HVGEGELIDLQYLNLSNT-NICEL--PIGIKSCTH 588 (798)
Q Consensus 516 ~~L~~L~l~~~~-~~~l~-~~~~~~l~~Lr~L~L~~~~~i~~l--p~~i~~L~~L~~L~Ls~~-~i~~l--p~~i~~l~~ 588 (798)
..|+.|.+.++. ...-+ ..+-.+++++..|++.+|..++.- -+.-..+.+|++|++..| .++.. -.....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 467888888872 22111 223567899999999999655532 122245788999999886 45432 223457888
Q ss_pred ccEEeCCCCCCccc--ccchhhcCCCCCccccccCCCC
Q 003753 589 LRTLLLDGTENLKA--IPVGMLSSLLSLRVFSWVPTRY 624 (798)
Q Consensus 589 L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~ 624 (798)
|.+|+++.|..+.. +-. ...++.+|+.+.+.+|.-
T Consensus 218 L~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e 254 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLE 254 (483)
T ss_pred HHHhhhccCchhhcCcchH-Hhccchhhhhhhhccccc
Confidence 99999998875544 111 145666777777776643
No 98
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=2.1e-05 Score=85.14 Aligned_cols=187 Identities=13% Similarity=0.071 Sum_probs=103.7
Q ss_pred CcccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcC
Q 003753 130 NNIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 208 (798)
.++||.+..+..|..++..+.. ..+.++|+.|+||||+|+.+++... ....... ..+....+. ..|.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln--ce~~~~~--~pCg~C~sC----~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN--CENPIGN--EPCNECTSC----LEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC--cccccCc--cccCCCcHH----HHHHccCC
Confidence 3689999999999999987775 4689999999999999999988762 1111100 001111111 11211110
Q ss_pred CCCCCCcc-ccCCHH---HHHHHHHH-HhcCCcEEEEEecccCcc--cccccCC--C-CCCCcEEE-EeCCchHHhhhc-
Q 003753 209 IDPDGDKW-KNRDDQ---GRAAEIFR-RLSNKKFALLLDDLRERI--ELSEAGV--P-VQNASKIV-FTTIFEEVCSSM- 276 (798)
Q Consensus 209 ~~~~~~~~-~~~~~~---~~~~~l~~-~l~~~r~LlVlDdv~~~~--~~~~~~~--p-~~~gs~ii-vTTR~~~v~~~~- 276 (798)
...-.-+. .....+ ++...+.. ...+++-++|+|+++... .+..+.. . ......+| .||....+....
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 00000000 011111 12222221 124566799999998653 2222211 1 22344444 455444443222
Q ss_pred CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCch
Q 003753 277 SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPL 327 (798)
Q Consensus 277 ~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 327 (798)
.-...|.+.+++.++..+.+.+.+.......+ .+....|++.++|.+-
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e---~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD---QEGLFWIAKKGDGSVR 217 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCChHH
Confidence 23357899999999998888887654432222 4467889999999874
No 99
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.09 E-value=6.2e-05 Score=76.95 Aligned_cols=163 Identities=13% Similarity=0.135 Sum_probs=107.3
Q ss_pred CcccchhHHHHHHHHHhhcCC---ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIEDDG---VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSR 206 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 206 (798)
+.+.+|+..+..+..++.+.. +..|.|+|-.|.|||.+.+++.+... -..+|+++-+.++...++..|+.+
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n------~~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN------LENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC------CcceeeehHHhccHHHHHHHHHHH
Confidence 368899999999999995532 45668999999999999999988762 235899999999999999999999
Q ss_pred cCCCCCCCccccC---CHHHHHHHHHH--Hhc--CCcEEEEEecccCcccccccCCC---------CCCCcEEEEeCCc-
Q 003753 207 LGIDPDGDKWKNR---DDQGRAAEIFR--RLS--NKKFALLLDDLRERIELSEAGVP---------VQNASKIVFTTIF- 269 (798)
Q Consensus 207 l~~~~~~~~~~~~---~~~~~~~~l~~--~l~--~~r~LlVlDdv~~~~~~~~~~~p---------~~~gs~iivTTR~- 269 (798)
.+..+.+...... .....+..+.+ ... ++.++||||+++...|.....+| ..+...| +++--
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~i-ils~~~ 158 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVI-ILSAPS 158 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEE-EEeccc
Confidence 9633321111111 12222333333 222 35899999999987766665444 3333333 33322
Q ss_pred -hHH-hhhcCCCc--ceeccCCChHHHHHHHHHh
Q 003753 270 -EEV-CSSMSVDW--RFKVDYLPQEEAWNLFRLK 299 (798)
Q Consensus 270 -~~v-~~~~~~~~--~~~l~~L~~~~a~~Lf~~~ 299 (798)
+.. ...++... ++..+.-+.+|...++.+-
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 111 11134333 4567788889988888654
No 100
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.08 E-value=0.00016 Score=78.28 Aligned_cols=178 Identities=15% Similarity=0.223 Sum_probs=104.4
Q ss_pred cccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhh-c------------------CCCCeEEEEEc
Q 003753 131 NIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDM-S------------------HKFGAVIMVKA 190 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-~------------------~~f~~~~wv~v 190 (798)
+++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.+....... . .+++. +++..
T Consensus 15 ~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~~ 93 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEIDA 93 (355)
T ss_pred hccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEeec
Confidence 689999999999999977654 467899999999999999988775210 0 12222 22222
Q ss_pred CCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc--ccccc--CCC-CCCCcEEEE
Q 003753 191 STELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI--ELSEA--GVP-VQNASKIVF 265 (798)
Q Consensus 191 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~--~~~~~--~~p-~~~gs~iiv 265 (798)
+......+ .+++.+.+...+ ..+++-++|+|+++... ....+ .+. ....+.+|+
T Consensus 94 ~~~~~~~~-~~~l~~~~~~~p--------------------~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 94 ASNNGVDD-IREILDNVKYAP--------------------SSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred cccCCHHH-HHHHHHHHhcCc--------------------ccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 21111111 112222211110 12355588999986542 11111 111 234566666
Q ss_pred eCCchH-Hhhhc-CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHH
Q 003753 266 TTIFEE-VCSSM-SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIG 333 (798)
Q Consensus 266 TTR~~~-v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 333 (798)
+|.+.. +.... .....+++.++++++..+.+...+.......+ .+.+..+++.++|.|..+....
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHHH
Confidence 665443 32211 22356788999999999888887654432222 3567888999999886555443
No 101
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.07 E-value=0.00024 Score=69.91 Aligned_cols=168 Identities=15% Similarity=0.213 Sum_probs=96.6
Q ss_pred CcccchhHHHHHHHHHhhc-----CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIED-----DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIR 204 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 204 (798)
.+|||.++.++++.=++.. +.+--+.++|++|.||||||.-+++... .. +-++-+....-..-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg---vn----~k~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELG---VN----LKITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc---CC----eEecccccccChhhHHHHH
Confidence 3799999999988777732 4567899999999999999999999872 11 1121111111111111111
Q ss_pred HHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc---------cccccCCC----CCCCcE---------
Q 003753 205 SRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI---------ELSEAGVP----VQNASK--------- 262 (798)
Q Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~---------~~~~~~~p----~~~gs~--------- 262 (798)
.. |+ ..=++.+|.+.... .++++.+. .++++|
T Consensus 99 t~-------------------------Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 99 TN-------------------------LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred hc-------------------------CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 11 11 22234456554321 11111111 223333
Q ss_pred --EEEeCCchHHhhhcC--CCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHH
Q 003753 263 --IVFTTIFEEVCSSMS--VDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIG 333 (798)
Q Consensus 263 --iivTTR~~~v~~~~~--~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 333 (798)
|=-|||.-.+..-+. -..+.+++-.+.+|-.+...+.+..-..... ++.+.+|++...|-|--..-+-
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLL 224 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLL 224 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHH
Confidence 234888654432221 1235688889999999999888754333322 4568999999999996444433
No 102
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.06 E-value=3.1e-06 Score=59.53 Aligned_cols=38 Identities=37% Similarity=0.483 Sum_probs=18.4
Q ss_pred ceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCccc
Q 003753 541 ALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICEL 579 (798)
Q Consensus 541 ~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~l 579 (798)
+|++|++++| .|+.+|..+++|++|++|++++|+++.+
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 4455555555 5555544455555555555555554443
No 103
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.05 E-value=5.9e-06 Score=87.27 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=40.1
Q ss_pred hhceeeEEeecCCCCCCCCCCCCCCCcceeeeeccc-ccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEE
Q 003753 491 WKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYT-MIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYL 569 (798)
Q Consensus 491 ~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L 569 (798)
+.++++|.+.++ .+..+| .++ ++|++|.+++| .+..+|.. + ..+|++|++++|..+..+|.+ |+.|
T Consensus 51 ~~~l~~L~Is~c-~L~sLP-~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L 117 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP-VLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES------VRSL 117 (426)
T ss_pred hcCCCEEEeCCC-CCcccC-CCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccccc------cceE
Confidence 456667777766 666666 222 24666666664 44555543 2 245666666666555555542 4555
Q ss_pred EcCCC
Q 003753 570 NLSNT 574 (798)
Q Consensus 570 ~Ls~~ 574 (798)
+++++
T Consensus 118 ~L~~n 122 (426)
T PRK15386 118 EIKGS 122 (426)
T ss_pred EeCCC
Confidence 55544
No 104
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.00013 Score=81.25 Aligned_cols=181 Identities=19% Similarity=0.236 Sum_probs=104.7
Q ss_pred CcccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhc------------------CCCCeEEEEEc
Q 003753 130 NNIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMS------------------HKFGAVIMVKA 190 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~v 190 (798)
.+++|.+..++.+...+..+.. ..+.++|+.|+||||+|+.+++...... ..|...+++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 3689999999999999977654 5578999999999999999987652100 01112222222
Q ss_pred CCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHH-HhcCCcEEEEEecccCccc--ccccC--CC-CCCCcEEE
Q 003753 191 STELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFR-RLSNKKFALLLDDLRERIE--LSEAG--VP-VQNASKIV 264 (798)
Q Consensus 191 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVlDdv~~~~~--~~~~~--~p-~~~gs~ii 264 (798)
.....+++ ..++...+.. -..+++-++|+|+++.... ...+. +. ....+.+|
T Consensus 96 as~~gvd~----------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fI 153 (546)
T PRK14957 96 ASRTGVEE----------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFI 153 (546)
T ss_pred ccccCHHH----------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEE
Confidence 11111111 1122222221 1235677999999976431 11110 11 22345555
Q ss_pred -EeCCchHHhhh-cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc-hHHHHHHHH
Q 003753 265 -FTTIFEEVCSS-MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP-LALVTIGSA 335 (798)
Q Consensus 265 -vTTR~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~g~~ 335 (798)
+||....+... ..-...+++.+++.++....+.+.+........ .+....|++.++|.+ .|+..+-.+
T Consensus 154 L~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e---~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 154 LATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD---EQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred EEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 55554444322 223467899999999988888776543322222 345678889999865 455554433
No 105
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=9.2e-05 Score=83.47 Aligned_cols=186 Identities=14% Similarity=0.137 Sum_probs=102.2
Q ss_pred CcccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHH--
Q 003753 130 NNIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSR-- 206 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~-- 206 (798)
.++||.+..++.|.+++..+++ +.+.++|..|+||||+|+.+.+...- .... -+..+.. -...+.|...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC-~~~~---~~~pCg~----C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC-ENAQ---HGEPCGV----CQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc-cCCC---CCCCCcc----cHHHHHHhccCc
Confidence 3699999999999999987664 56899999999999999998876521 1000 0000000 0000011000
Q ss_pred ---cCCCCCCCccccCCHHHHHHHHHH----HhcCCcEEEEEecccCccc-----ccccCCCCCCCcEEEEeCCch-HHh
Q 003753 207 ---LGIDPDGDKWKNRDDQGRAAEIFR----RLSNKKFALLLDDLRERIE-----LSEAGVPVQNASKIVFTTIFE-EVC 273 (798)
Q Consensus 207 ---l~~~~~~~~~~~~~~~~~~~~l~~----~l~~~r~LlVlDdv~~~~~-----~~~~~~p~~~gs~iivTTR~~-~v~ 273 (798)
+.+.. ......+.+...+.. -..+++-++|+|++..... +.+..-.....+++|++|.+. .+.
T Consensus 88 ~DvlEida----As~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 88 VDLLEIDA----ASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred cceEEEec----cccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 00000 001111222111111 1235667899999976431 111111023445666665433 332
Q ss_pred hh-cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHH
Q 003753 274 SS-MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALV 330 (798)
Q Consensus 274 ~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 330 (798)
.. .+-...+.+.+++.++....+.+.+........ .+....|++.++|.+--+.
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id---~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE---PPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHhCCCHHHHH
Confidence 11 122346788899999999999887765433222 3467889999998884433
No 106
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00017 Score=79.31 Aligned_cols=174 Identities=18% Similarity=0.223 Sum_probs=104.6
Q ss_pred CcccchhHHHHHHHHHhhcCCce-EEEEEecCCchHHHHHHHHHHHhhhh------------------cCCCCeEEEEEc
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVK-IIGLYGVRGVGKSTLLKQLNDTFSDM------------------SHKFGAVIMVKA 190 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~~f~~~~wv~v 190 (798)
.++||.+..++.+.+.+..+.+. .+.++|+.|+||||+|+.+++...-. ...+.-++.++.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 36999999999999888777665 79999999999999999887743100 011112333443
Q ss_pred CCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc-----cccc-CCCCCCCcEEE
Q 003753 191 STELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE-----LSEA-GVPVQNASKIV 264 (798)
Q Consensus 191 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-----~~~~-~~p~~~gs~ii 264 (798)
+....++++- +|++.....+ ..+++-++|+|++..... +.+. .- ..+.+++|
T Consensus 93 as~~~vddIR-~Iie~~~~~P--------------------~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe-Pp~~v~fI 150 (491)
T PRK14964 93 ASNTSVDDIK-VILENSCYLP--------------------ISSKFKVYIIDEVHMLSNSAFNALLKTLEE-PAPHVKFI 150 (491)
T ss_pred ccCCCHHHHH-HHHHHHHhcc--------------------ccCCceEEEEeChHhCCHHHHHHHHHHHhC-CCCCeEEE
Confidence 3333332221 2222211110 124566899999875431 1111 11 23455555
Q ss_pred E-eCCchHHhhhc-CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchH
Q 003753 265 F-TTIFEEVCSSM-SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLA 328 (798)
Q Consensus 265 v-TTR~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 328 (798)
+ ||....+.... .....+++.+++.++....+.+.+.......+ .+....|++.++|.+-.
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRN 213 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 5 44444553322 23467899999999999999888765443222 34577899999887753
No 107
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00013 Score=82.34 Aligned_cols=193 Identities=16% Similarity=0.149 Sum_probs=103.8
Q ss_pred CcccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhc-CCCCeEEEEEcCCccCHHHHHHHHHHHc
Q 003753 130 NNIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMS-HKFGAVIMVKASTELNIEKIQDVIRSRL 207 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~vs~~~~~~~~~~~i~~~l 207 (798)
.++||-+..++.|.+++..+.. ..+.++|..|+||||+|+.+.+...-.. ........ ..+..-..-+.|..
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~-- 89 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDS-- 89 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHc--
Confidence 3689999999999999987765 5678999999999999999877652100 00000000 01111111112210
Q ss_pred CCCCC--CC-ccccCCHHHHHHHHHHH----hcCCcEEEEEecccCcc--c---ccccCCCCCCCcEEEE-eCCchHHhh
Q 003753 208 GIDPD--GD-KWKNRDDQGRAAEIFRR----LSNKKFALLLDDLRERI--E---LSEAGVPVQNASKIVF-TTIFEEVCS 274 (798)
Q Consensus 208 ~~~~~--~~-~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~~~--~---~~~~~~p~~~gs~iiv-TTR~~~v~~ 274 (798)
+...+ .. .......++....+... ..++.-++|+|+++... . +.+..-......++|+ ||....+..
T Consensus 90 g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 00000 00 00011122222212111 12455689999998653 1 2221111234455554 544444432
Q ss_pred h-cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHH
Q 003753 275 S-MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVT 331 (798)
Q Consensus 275 ~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 331 (798)
. ..-...++++.++.++..+.+.+.+.......+ .+....|++.++|.+--+..
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 2 223467899999999999999887754433222 34578888899887744433
No 108
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.03 E-value=0.0001 Score=79.87 Aligned_cols=166 Identities=18% Similarity=0.275 Sum_probs=96.8
Q ss_pred cccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHH
Q 003753 131 NIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIE 197 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 197 (798)
++.|++..++++.+.+.. ...+-|.++|++|+|||++|+.+++.. ... |+.++. .
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~----~ 199 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG----S 199 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----H
Confidence 588999999999887622 235678999999999999999999876 222 222211 1
Q ss_pred HHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHh-cCCcEEEEEecccCcc------------c----ccccC--CC--
Q 003753 198 KIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRL-SNKKFALLLDDLRERI------------E----LSEAG--VP-- 256 (798)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~------------~----~~~~~--~p-- 256 (798)
++. ... .... ......+.+.. ...+.+|+|||++... + +..+. ..
T Consensus 200 ~l~----~~~---------~g~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 200 ELV----QKF---------IGEG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred HHh----Hhh---------ccch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 111 110 0111 12222222222 3467899999987531 0 11110 11
Q ss_pred -CCCCcEEEEeCCchHHhhh--c---CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc
Q 003753 257 -VQNASKIVFTTIFEEVCSS--M---SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP 326 (798)
Q Consensus 257 -~~~gs~iivTTR~~~v~~~--~---~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 326 (798)
...+..||.||...+.... . .-...+.++..+.++-.++|+.++.........+ ...+++.+.|.-
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 2345677778765433211 1 1245689999999999999998876543222222 345666666654
No 109
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=0.0002 Score=77.10 Aligned_cols=181 Identities=13% Similarity=0.074 Sum_probs=99.7
Q ss_pred cccchhHHHHHHHHHhhcCC----------ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHH
Q 003753 131 NIVGIESRLSEVWRYIEDDG----------VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQ 200 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 200 (798)
+++|-+..++.|.+++..+. .+-+.++|+.|+|||++|+.++.... ...-+ +..++.. ..-
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~--c~~~~---~~~Cg~C----~~C 76 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQ--CTDPD---EPGCGEC----RAC 76 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC--CCCCC---CCCCCCC----HHH
Confidence 68999999999999997653 46688999999999999999877652 11000 0000000 000
Q ss_pred HHHHHHcCCCCC----CCccccCCHHHHHHHHHHHh-----cCCcEEEEEecccCccc-----cccc-CCCCCCCcEEEE
Q 003753 201 DVIRSRLGIDPD----GDKWKNRDDQGRAAEIFRRL-----SNKKFALLLDDLRERIE-----LSEA-GVPVQNASKIVF 265 (798)
Q Consensus 201 ~~i~~~l~~~~~----~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~~-----~~~~-~~p~~~gs~iiv 265 (798)
+.+... ..++ .........++. +.+.+.. .+++-++|+|+++.... +.+. .- ...+..+|+
T Consensus 77 ~~~~~~--~hpD~~~i~~~~~~i~i~~i-R~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe-p~~~~~fIL 152 (394)
T PRK07940 77 RTVLAG--THPDVRVVAPEGLSIGVDEV-RELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE-PPPRTVWLL 152 (394)
T ss_pred HHHhcC--CCCCEEEeccccccCCHHHH-HHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc-CCCCCeEEE
Confidence 111000 0000 000001112221 1222222 24556888899986531 2221 12 233455555
Q ss_pred eCCc-hHHhhhc-CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003753 266 TTIF-EEVCSSM-SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTI 332 (798)
Q Consensus 266 TTR~-~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 332 (798)
+|.+ ..+.... .-...+.+.+++.++..+.+.+..+. + .+.+..+++.++|.|.....+
T Consensus 153 ~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 153 CAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-----D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred EECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 5544 4443222 23467899999999999888754321 1 245778999999999765444
No 110
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.02 E-value=2.4e-05 Score=82.34 Aligned_cols=95 Identities=13% Similarity=0.120 Sum_probs=65.2
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc--cCHHHHHHHHHHHcCCCCCCCccccCCHH----
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE--LNIEKIQDVIRSRLGIDPDGDKWKNRDDQ---- 222 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~---- 222 (798)
+.-..++|+|++|+|||||++.+++... .++|+..+|+.+.+. .++.++++.|...+-...-+. ......
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~--p~~~~~~va~ 241 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDE--PASRHVQVAE 241 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCC--ChHHHHHHHH
Confidence 3456899999999999999999999883 458999999999866 789999999955433222110 011111
Q ss_pred HHHHHHHHH-hcCCcEEEEEecccCc
Q 003753 223 GRAAEIFRR-LSNKKFALLLDDLRER 247 (798)
Q Consensus 223 ~~~~~l~~~-l~~~r~LlVlDdv~~~ 247 (798)
...+..+.. -.+++++|++|++...
T Consensus 242 ~v~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 242 MVIEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHHHcCCCeEEEEEChhHH
Confidence 111222222 3579999999998754
No 111
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=0.00024 Score=75.42 Aligned_cols=195 Identities=13% Similarity=0.062 Sum_probs=110.6
Q ss_pred CcccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhc-CCCCeEEEEEcCCccCHHHHHHHHHHH-
Q 003753 130 NNIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMS-HKFGAVIMVKASTELNIEKIQDVIRSR- 206 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~vs~~~~~~~~~~~i~~~- 206 (798)
..++|-+...+.+...+..+.. ..+.|+|+.|+||||+|..+.+...... ..+... ............+.|...
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCC
Confidence 3689999999999999987664 4699999999999999999988762100 001111 011111111233333222
Q ss_pred ------cCCCCCCC--c-cccCCHHHHHHHHHHHhc-----CCcEEEEEecccCccc-----cccc-CCCCCCCcEEEEe
Q 003753 207 ------LGIDPDGD--K-WKNRDDQGRAAEIFRRLS-----NKKFALLLDDLRERIE-----LSEA-GVPVQNASKIVFT 266 (798)
Q Consensus 207 ------l~~~~~~~--~-~~~~~~~~~~~~l~~~l~-----~~r~LlVlDdv~~~~~-----~~~~-~~p~~~gs~iivT 266 (798)
+..+.+.. . ......++ +..+.+++. +++-++|+|+++.... +.+. .-|.....-|++|
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 11110000 0 01122333 334555543 4667999999986531 1111 1233333445555
Q ss_pred CCchHHhhhc-CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHH
Q 003753 267 TIFEEVCSSM-SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIG 333 (798)
Q Consensus 267 TR~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 333 (798)
++...+.... .-...+.+.+++.++..+++.+...... .+ .+....+++.++|.|.....+.
T Consensus 179 ~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~---~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 179 HSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SD---GEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 5544442221 1235789999999999999987432111 11 3446789999999998665543
No 112
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.01 E-value=5.7e-06 Score=85.77 Aligned_cols=293 Identities=18% Similarity=0.158 Sum_probs=180.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF 229 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 229 (798)
..+.+.++|.|||||||++-++.. .. ..+-+.+.++....-.|...+.-.....++.... +-+.....+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-------~g~~~~~~~~ 82 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-------PGDSAVDTLV 82 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhcccccc-------cchHHHHHHH
Confidence 457899999999999999999988 41 3455677777777777777777777777877652 1123444566
Q ss_pred HHhcCCcEEEEEecccCcccccccC----CCCCCCcEEEEeCCchHHhhhcCCCcceeccCCChH-HHHHHHHHhccCcc
Q 003753 230 RRLSNKKFALLLDDLRERIELSEAG----VPVQNASKIVFTTIFEEVCSSMSVDWRFKVDYLPQE-EAWNLFRLKVTDEV 304 (798)
Q Consensus 230 ~~l~~~r~LlVlDdv~~~~~~~~~~----~p~~~gs~iivTTR~~~v~~~~~~~~~~~l~~L~~~-~a~~Lf~~~~~~~~ 304 (798)
....++|.++|+||-.+..+--.-+ .-+...-.|+.|+|.... ........+++|+.. ++.++|...+....
T Consensus 83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhc
Confidence 7778899999999976543211110 112334467778775532 223456678888755 78899887764321
Q ss_pred c--CCChhHHHHHHHHHHHhCCCchHHHHHHHHhcCCCChhHHHHHH----HHHhcCCCCCCCcccchhhhhhhhhcCCC
Q 003753 305 L--NSHPEIRELAETVANMCGGLPLALVTIGSAMASRRDPDNWRYAI----EELQRYPSGFESIGTHVFPLLKFSYDRLT 378 (798)
Q Consensus 305 ~--~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~~----~~l~~~~~~~~~~~~~i~~~l~~sy~~L~ 378 (798)
. .-...-.....+|.++..|.|++|..+++..+. ....+-...+ ..+........--.....+.+.+||.-|.
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~s-l~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLt 238 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRS-LSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLT 238 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHh-cCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhh
Confidence 0 111122456889999999999999999988876 2222222111 11221111001112367889999999999
Q ss_pred chhHhHHHHhhcCCCCCceecHHHHHHHHHhcCCCcCCccHHHHHHhHHHHHHHHHHcccccccccCCCcCcEEEccchH
Q 003753 379 SETHKTCFLYGSLFPRNQIIMKDELIELWIGEGLLRDSHNIAVARREGKFILESLKLACLLEEVEVNNSEDFVKMHNMLR 458 (798)
Q Consensus 379 ~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~mHdlv~ 458 (798)
.- .+.-|--++.|...+... ...|.+.|-.... .....-..+..+++.+++...... ....|+.-+-+|
T Consensus 239 gw-e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~-----~~y~~~~a~~ll~~kslv~a~~~~-~~a~~Rl~eT~r 307 (414)
T COG3903 239 GW-ERALFGRLAVFVGGFDLG----LALAVAAGADVDV-----PRYLVLLALTLLVDKSLVVALDLL-GRARYRLLETGR 307 (414)
T ss_pred hH-HHHHhcchhhhhhhhccc----HHHHHhcCCcccc-----chHHHHHHHHHHhhccchhhhhhh-hHHHHHHHHHHH
Confidence 86 888888889888776554 2344444422110 112233345667777776654321 133455555666
Q ss_pred HHHHHHHhh
Q 003753 459 DMALWIASS 467 (798)
Q Consensus 459 d~a~~~~~~ 467 (798)
.|+..+-.+
T Consensus 308 ~YalaeL~r 316 (414)
T COG3903 308 RYALAELHR 316 (414)
T ss_pred HHHHHHHHh
Confidence 666665554
No 113
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.01 E-value=1.6e-07 Score=102.15 Aligned_cols=129 Identities=23% Similarity=0.179 Sum_probs=102.5
Q ss_pred hchhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccccc-ccCCCCCC
Q 003753 489 ASWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVG-EGELIDLQ 567 (798)
Q Consensus 489 ~~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~ 567 (798)
..|.++...++..| .+..+...+.-++.|+.|+|++|.+.+.. ++..|++|+.|||++| .+..+|.- ...+. |+
T Consensus 161 ~~Wn~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 161 PVWNKLATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQ 235 (1096)
T ss_pred hhhhhHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhh-he
Confidence 45778888888888 77777666677889999999999888876 4889999999999999 89988752 23333 99
Q ss_pred EEEcCCCCCcccCccccCCCcccEEeCCCCCCcccccc-hhhcCCCCCccccccCCCC
Q 003753 568 YLNLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPV-GMLSSLLSLRVFSWVPTRY 624 (798)
Q Consensus 568 ~L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~ 624 (798)
.|++++|-+++|- ++.+|.+|+.||+++|- +..... ..++.|..|+.|++.+|.+
T Consensus 236 ~L~lrnN~l~tL~-gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 236 LLNLRNNALTTLR-GIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eeeecccHHHhhh-hHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 9999999888886 78899999999999885 333221 1267788899999998765
No 114
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=7e-05 Score=83.53 Aligned_cols=192 Identities=16% Similarity=0.186 Sum_probs=103.4
Q ss_pred CcccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcC
Q 003753 130 NNIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 208 (798)
.+++|.+..++.+.+++..+.. +.+.++|+.|+||||+|+.+++... ... |.... .+..-...+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~--C~~-----~~~~~-~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN--CLN-----PKDGD-CCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc--CCC-----CCCCC-CCcccHHHHHHHcCCC
Confidence 3689999999999999976554 5788999999999999999988762 111 21110 1111111122211100
Q ss_pred CCCCCCc-cccCCHHHHHHHHHHH-----hcCCcEEEEEecccCcc--ccccc----CCCCCCCcEEEE-eCCchHHhhh
Q 003753 209 IDPDGDK-WKNRDDQGRAAEIFRR-----LSNKKFALLLDDLRERI--ELSEA----GVPVQNASKIVF-TTIFEEVCSS 275 (798)
Q Consensus 209 ~~~~~~~-~~~~~~~~~~~~l~~~-----l~~~r~LlVlDdv~~~~--~~~~~----~~p~~~gs~iiv-TTR~~~v~~~ 275 (798)
...-.-+ ......++. +.+.+. ..+++-++|+|+++... ....+ .-| ..++.+|+ |+....+...
T Consensus 88 ~DiieIdaas~igVd~I-ReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP-p~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 88 VDIVELDAASNNGVDEI-RNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP-PKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CceEEeccccccCHHHH-HHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhC-CCcEEEEEECCChHhhhHH
Confidence 0000000 000111211 111111 12344479999987642 11111 112 23445554 4444444322
Q ss_pred -cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCch-HHHHHHH
Q 003753 276 -MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPL-ALVTIGS 334 (798)
Q Consensus 276 -~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~g~ 334 (798)
......+++.++++++....+.+.+.......+ .+.+..+++.++|.+- |+..+-.
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 223457899999999999888887654332222 3457788999998664 4444443
No 115
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.99 E-value=6.8e-05 Score=82.57 Aligned_cols=165 Identities=13% Similarity=0.167 Sum_probs=103.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRR 231 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 231 (798)
.-+.|+|..|+|||+|++.+++.... ...-..+++++ ..++...+...++... .....+.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~------~~~f~~~~~~~l~~~~-----------~~~~~~~~~ 203 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMS------GDEFARKAVDILQKTH-----------KEIEQFKNE 203 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEE------HHHHHHHHHHHHHHhh-----------hHHHHHHHH
Confidence 46899999999999999999986632 12223455553 3456666666553210 122334444
Q ss_pred hcCCcEEEEEecccCcc---cccccCCC-----CCCCcEEEEeCCch---------HHhhhcCCCcceeccCCChHHHHH
Q 003753 232 LSNKKFALLLDDLRERI---ELSEAGVP-----VQNASKIVFTTIFE---------EVCSSMSVDWRFKVDYLPQEEAWN 294 (798)
Q Consensus 232 l~~~r~LlVlDdv~~~~---~~~~~~~p-----~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~a~~ 294 (798)
++ +.-+||+||+.... .+.+..+. ...|..||+|+... .+...+...-++.+++++.++-.+
T Consensus 204 ~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 204 IC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred hc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 44 34488899996542 12221111 34556788887643 223344555678899999999999
Q ss_pred HHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHHHh
Q 003753 295 LFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGSAM 336 (798)
Q Consensus 295 Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l 336 (798)
++.+++....... .--+++..-|++.++|.|-.+..+...+
T Consensus 283 iL~~~~~~~gl~~-~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 283 IIKKEIKNQNIKQ-EVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHHhcCCCC-CCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 9999886432110 1115678889999999998776665433
No 116
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=6.4e-06 Score=57.94 Aligned_cols=41 Identities=32% Similarity=0.460 Sum_probs=33.9
Q ss_pred CCCCEEEcCCCCCcccCccccCCCcccEEeCCCCCCcccccc
Q 003753 564 IDLQYLNLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPV 605 (798)
Q Consensus 564 ~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 605 (798)
++|++|++++|+|+.+|..+++|++|++|++++|. ++++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 47899999999999998779999999999999997 777764
No 117
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00014 Score=81.09 Aligned_cols=176 Identities=15% Similarity=0.210 Sum_probs=102.9
Q ss_pred CcccchhHHHHHHHHHhhcCCce-EEEEEecCCchHHHHHHHHHHHhhhh------------------cCCCCeEEEEEc
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVK-IIGLYGVRGVGKSTLLKQLNDTFSDM------------------SHKFGAVIMVKA 190 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~~f~~~~wv~v 190 (798)
.++||-+..++.|.+++..+.+. .+.++|+.|+||||+|+.+++...-. .+.|.-++.+..
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eida 95 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDA 95 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcc
Confidence 36999999999999999877654 57899999999999999988866210 011112333332
Q ss_pred CCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc--c---cccc-CCCCCCCcEEE
Q 003753 191 STELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI--E---LSEA-GVPVQNASKIV 264 (798)
Q Consensus 191 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~--~---~~~~-~~p~~~gs~ii 264 (798)
+....++++ +++++.+...+ ..++.-++|+|+++... . +.+. .- ....+++|
T Consensus 96 as~~~v~~i-R~l~~~~~~~p--------------------~~~~~kV~iIDE~~~ls~~a~naLLk~LEe-pp~~~~fI 153 (509)
T PRK14958 96 ASRTKVEDT-RELLDNIPYAP--------------------TKGRFKVYLIDEVHMLSGHSFNALLKTLEE-PPSHVKFI 153 (509)
T ss_pred cccCCHHHH-HHHHHHHhhcc--------------------ccCCcEEEEEEChHhcCHHHHHHHHHHHhc-cCCCeEEE
Confidence 222222222 22222221111 13566789999998642 1 1121 11 23456666
Q ss_pred EeC-CchHHhhh-cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHH
Q 003753 265 FTT-IFEEVCSS-MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALV 330 (798)
Q Consensus 265 vTT-R~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 330 (798)
++| ....+... ......+++.+++.++....+.+.+........ .+....|++.++|.+--+.
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDAL 218 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHH
Confidence 544 43333222 122356889999999888777766654332222 3356778888888775433
No 118
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.97 E-value=0.00032 Score=68.08 Aligned_cols=156 Identities=16% Similarity=0.189 Sum_probs=87.9
Q ss_pred HHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhc-------------------CCCCeEEEEEc-CCccCHHHH
Q 003753 141 EVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMS-------------------HKFGAVIMVKA-STELNIEKI 199 (798)
Q Consensus 141 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~v-s~~~~~~~~ 199 (798)
.+.+.+..+.. ..+.++|+.|+||||+|+.+.+...... .+.|. .++.. .....++++
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHH
Confidence 45566656655 6799999999999999999887762100 11122 12211 111111111
Q ss_pred HHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc-----cccc-CCCCCCCcEEEEeCCch-HH
Q 003753 200 QDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE-----LSEA-GVPVQNASKIVFTTIFE-EV 272 (798)
Q Consensus 200 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-----~~~~-~~p~~~gs~iivTTR~~-~v 272 (798)
+++.+.+...+ ..+.+-++|+||++.... +.+. .- ....+.+|++|++. .+
T Consensus 82 -~~i~~~~~~~~--------------------~~~~~kviiide~~~l~~~~~~~Ll~~le~-~~~~~~~il~~~~~~~l 139 (188)
T TIGR00678 82 -RELVEFLSRTP--------------------QESGRRVVIIEDAERMNEAAANALLKTLEE-PPPNTLFILITPSPEKL 139 (188)
T ss_pred -HHHHHHHccCc--------------------ccCCeEEEEEechhhhCHHHHHHHHHHhcC-CCCCeEEEEEECChHhC
Confidence 11222211111 124566899999876431 2221 11 23355566666543 22
Q ss_pred hhhc-CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchH
Q 003753 273 CSSM-SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLA 328 (798)
Q Consensus 273 ~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 328 (798)
.... .....+.+.+++.++..+.+.+. + . + .+.+..|++.++|.|..
T Consensus 140 ~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g---i--~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 140 LPTIRSRCQVLPFPPLSEEALLQWLIRQ-G---I--S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred hHHHHhhcEEeeCCCCCHHHHHHHHHHc-C---C--C---HHHHHHHHHHcCCCccc
Confidence 2211 12357899999999998888877 1 1 1 35688999999998853
No 119
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.95 E-value=9.3e-07 Score=90.71 Aligned_cols=86 Identities=22% Similarity=0.293 Sum_probs=37.6
Q ss_pred ccCceEEeeccC-CCC--CC-cccCCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcc-c
Q 003753 690 QDLQDLSIINCS-IKD--LT-CIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNIC-H 764 (798)
Q Consensus 690 ~~L~~L~L~~~~-l~~--l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~-~ 764 (798)
+.|+.+++..|. +.+ +. .-.+.+.|+.|.|+.|..+++.-. ........+...|+.|.|++||.+..-. .
T Consensus 346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi-----~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le 420 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI-----RHLSSSSCSLEGLEVLELDNCPLITDATLE 420 (483)
T ss_pred hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh-----hhhhhccccccccceeeecCCCCchHHHHH
Confidence 455666665552 111 11 112455666666665555444200 0001122344555566666655543221 1
Q ss_pred CCCCCCCcceeeeccC
Q 003753 765 KAMAFPSLERIYVHGC 780 (798)
Q Consensus 765 ~~~~~~~L~~L~l~~c 780 (798)
....+++|+.+++.+|
T Consensus 421 ~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 421 HLSICRNLERIELIDC 436 (483)
T ss_pred HHhhCcccceeeeech
Confidence 2223455555555554
No 120
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00019 Score=78.33 Aligned_cols=194 Identities=12% Similarity=0.092 Sum_probs=103.9
Q ss_pred cccchhHHHHHHHHHhhcCCce-EEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEE-cCCccCHHHHHHHHHHHcC
Q 003753 131 NIVGIESRLSEVWRYIEDDGVK-IIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVK-ASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-vs~~~~~~~~~~~i~~~l~ 208 (798)
+++|.+..++.|..++..+.+. .+.++|+.|+||||+|+.+++...- ...++...|.. +......-..-+.+.....
T Consensus 17 eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c-~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~ 95 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC-QRMIDDADYLQEVTEPCGECESCRDFDAGTS 95 (397)
T ss_pred hccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC-CCCcCcccccccCCCCCCCCHHHHHHhcCCC
Confidence 6899999999999999877664 5889999999999999999887621 11111111110 0011111111111111100
Q ss_pred CCCCCCcc-ccCCHHHHHHHHHHHh-----cCCcEEEEEecccCcc--cccccC--CC-CCCCcEEEE-eCCchHHhhhc
Q 003753 209 IDPDGDKW-KNRDDQGRAAEIFRRL-----SNKKFALLLDDLRERI--ELSEAG--VP-VQNASKIVF-TTIFEEVCSSM 276 (798)
Q Consensus 209 ~~~~~~~~-~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~--~~~~~~--~p-~~~gs~iiv-TTR~~~v~~~~ 276 (798)
......+. .....++.. .+.+.+ .+++-++|+|++.... .+..+. +. ....+.+|+ |++...+....
T Consensus 96 ~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl 174 (397)
T PRK14955 96 LNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (397)
T ss_pred CCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHH
Confidence 00000000 011122222 233333 3456688999987543 222220 11 234555555 44444443221
Q ss_pred -CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHH
Q 003753 277 -SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLAL 329 (798)
Q Consensus 277 -~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 329 (798)
.....+++.++++++....+...+.......+ .+.+..|++.++|.+--+
T Consensus 175 ~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 175 ASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 12346889999999998888877643322222 456888999999977533
No 121
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.92 E-value=0.00013 Score=86.62 Aligned_cols=179 Identities=12% Similarity=0.125 Sum_probs=101.0
Q ss_pred CcccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhh---cCCCCeEEE-EEcCCccCHHHHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDM---SHKFGAVIM-VKASTELNIEKIQDVIRS 205 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~w-v~vs~~~~~~~~~~~i~~ 205 (798)
..++||+.+++++++.|......-+.++|.+|+||||+|+.++++.... ....+..+| +..+.- ..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l----------~a 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL----------QA 256 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh----------hc
Confidence 4689999999999999977666677899999999999999999886211 011223333 222110 00
Q ss_pred HcCCCCCCCccccCCHHHHHHHHHHHhc--CCcEEEEEecccCcc---------cccccCCC--CCCCcEEEEeCCchHH
Q 003753 206 RLGIDPDGDKWKNRDDQGRAAEIFRRLS--NKKFALLLDDLRERI---------ELSEAGVP--VQNASKIVFTTIFEEV 272 (798)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~---------~~~~~~~p--~~~gs~iivTTR~~~v 272 (798)
+.. ...+.+.....+.+.+. +++.+|++|++.... +...+..| ....-++|-||..++.
T Consensus 257 --g~~------~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~ 328 (852)
T TIGR03345 257 --GAS------VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEY 328 (852)
T ss_pred --ccc------cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHH
Confidence 000 11122233333333332 468999999986542 22224456 3334566666665433
Q ss_pred hhhc-------CCCcceeccCCChHHHHHHHHHhccCccc-CCChhHHHHHHHHHHHhCCCc
Q 003753 273 CSSM-------SVDWRFKVDYLPQEEAWNLFRLKVTDEVL-NSHPEIRELAETVANMCGGLP 326 (798)
Q Consensus 273 ~~~~-------~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~-~~~~~~~~~~~~i~~~c~glP 326 (798)
...+ .-.+.+.+++++.+++.++++.....-.. ..-.--.+....+++.+.+..
T Consensus 329 ~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 329 KKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred hhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 1111 12357999999999999997544321100 000001344566666665543
No 122
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00016 Score=81.94 Aligned_cols=188 Identities=15% Similarity=0.133 Sum_probs=104.1
Q ss_pred cccchhHHHHHHHHHhhcCCce-EEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 131 NIVGIESRLSEVWRYIEDDGVK-IIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
++||.+..++.|.+.+..+.+. .+.++|..|+||||+|+.+++...- ...+. +..+..-...+.|...-..
T Consensus 17 divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c-~~~~~-------~~pCg~C~~C~~i~~g~~~ 88 (647)
T PRK07994 17 EVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC-ETGIT-------ATPCGECDNCREIEQGRFV 88 (647)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh-ccCCC-------CCCCCCCHHHHHHHcCCCC
Confidence 6999999999999999877654 4689999999999999999877621 01000 0011111122222110000
Q ss_pred CC---CCCccccCCHHHH---HHHHHH-HhcCCcEEEEEecccCcc--ccccc----CCCCCCCcEEEE-eCCchHHhhh
Q 003753 210 DP---DGDKWKNRDDQGR---AAEIFR-RLSNKKFALLLDDLRERI--ELSEA----GVPVQNASKIVF-TTIFEEVCSS 275 (798)
Q Consensus 210 ~~---~~~~~~~~~~~~~---~~~l~~-~l~~~r~LlVlDdv~~~~--~~~~~----~~p~~~gs~iiv-TTR~~~v~~~ 275 (798)
.. +.. .....++. ...+.. -..+++-++|+|+++... ....+ -- .....++|+ ||....+...
T Consensus 89 D~ieidaa--s~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE-Pp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 89 DLIEIDAA--SRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-PPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred Cceeeccc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc-CCCCeEEEEecCCccccchH
Confidence 00 000 00112222 111111 124577799999998653 11111 11 233445554 5544444322
Q ss_pred -cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003753 276 -MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTI 332 (798)
Q Consensus 276 -~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 332 (798)
..-...|.+.+++.++....+.+.+........ .+....|++.++|.+--+..+
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e---~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE---PRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 222467899999999999999877643322211 345678999999987644333
No 123
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00021 Score=80.40 Aligned_cols=178 Identities=16% Similarity=0.210 Sum_probs=101.8
Q ss_pred CcccchhHHHHHHHHHhhcCCce-EEEEEecCCchHHHHHHHHHHHhhhhc------------------CCCCeEEEEEc
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVK-IIGLYGVRGVGKSTLLKQLNDTFSDMS------------------HKFGAVIMVKA 190 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~v 190 (798)
.+++|-+..++.+..++..+... .+.++|+.|+||||+|+.+.+...-.. ..|.-++++..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 36899999999999999876654 568999999999999999987762100 01111222222
Q ss_pred CCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc-----cccc-CCCCCCCcEEE
Q 003753 191 STELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE-----LSEA-GVPVQNASKIV 264 (798)
Q Consensus 191 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-----~~~~-~~p~~~gs~ii 264 (798)
+....+++ .+++++..... -..+++-++|+|+++.... +.+. .- ....+.+|
T Consensus 96 ~~~~~vd~-ir~l~~~~~~~--------------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEe-pp~~~~fI 153 (527)
T PRK14969 96 ASNTQVDA-MRELLDNAQYA--------------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE-PPEHVKFI 153 (527)
T ss_pred cccCCHHH-HHHHHHHHhhC--------------------cccCCceEEEEcCcccCCHHHHHHHHHHHhC-CCCCEEEE
Confidence 11111111 11222111110 0135667999999976532 1111 11 22345555
Q ss_pred EeC-CchHHhhh-cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCch-HHHHH
Q 003753 265 FTT-IFEEVCSS-MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPL-ALVTI 332 (798)
Q Consensus 265 vTT-R~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 332 (798)
++| ....+... ..-...+++.+++.++..+.+.+.+........ .+....|++.++|.+- |+..+
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~---~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD---ATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 544 43333211 112357899999999998888777643332211 3456788999999774 44444
No 124
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=0.00054 Score=72.16 Aligned_cols=196 Identities=17% Similarity=0.205 Sum_probs=120.3
Q ss_pred cccchhHHHHHHHHHhhc----CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHH
Q 003753 131 NIVGIESRLSEVWRYIED----DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSR 206 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 206 (798)
.++||+.+++.+.+|+.. ...+-+.|.|.+|.|||.+...++.+...-... -.++++.+..-.....++..|...
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~~~ 229 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIFSS 229 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHHHH
Confidence 689999999999999843 456789999999999999999999988321112 245666665545566777777766
Q ss_pred c--CCCCCCCccccCCHHHHHHHHHHHhcCC--cEEEEEecccCcc-----cc-cccCCCCCCCcEEEEeCCchHH----
Q 003753 207 L--GIDPDGDKWKNRDDQGRAAEIFRRLSNK--KFALLLDDLRERI-----EL-SEAGVPVQNASKIVFTTIFEEV---- 272 (798)
Q Consensus 207 l--~~~~~~~~~~~~~~~~~~~~l~~~l~~~--r~LlVlDdv~~~~-----~~-~~~~~p~~~gs~iivTTR~~~v---- 272 (798)
+ .... .....+....+.+...+. -+|+|+|..+... .+ .-+.+|.-+++|+|+.---..+
T Consensus 230 ~~q~~~s------~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 230 LLQDLVS------PGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHhcC------CchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 6 1111 112245556666666553 5899999987542 11 1223445567777654322111
Q ss_pred --hhhc-----CCCcceeccCCChHHHHHHHHHhccCcccC--CChhHHHHHHHHHHHhCCCchHHHHHH
Q 003753 273 --CSSM-----SVDWRFKVDYLPQEEAWNLFRLKVTDEVLN--SHPEIRELAETVANMCGGLPLALVTIG 333 (798)
Q Consensus 273 --~~~~-----~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~--~~~~~~~~~~~i~~~c~glPLai~~~g 333 (798)
.... -....+..++.+.++-.++|.++....... .++.++-.|++++.-.|.+--|+.+.-
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 1111 123467888999999999999988654321 122333334444444444455554443
No 125
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.87 E-value=0.00018 Score=79.20 Aligned_cols=154 Identities=19% Similarity=0.159 Sum_probs=94.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCC-eEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFG-AVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF 229 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 229 (798)
..-+.|+|..|+|||+||+.+++... +.+.+ .++|++. .++..++...+... ..+ .+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~~~~~---------~~~----~f~ 188 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDSMKEG---------KLN----EFR 188 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHhcc---------cHH----HHH
Confidence 34699999999999999999999873 23333 4667754 34555555544311 112 233
Q ss_pred HHhcCCcEEEEEecccCcc-------cccccCCC-CCCCcEEEEeCC-chHH--------hhhcCCCcceeccCCChHHH
Q 003753 230 RRLSNKKFALLLDDLRERI-------ELSEAGVP-VQNASKIVFTTI-FEEV--------CSSMSVDWRFKVDYLPQEEA 292 (798)
Q Consensus 230 ~~l~~~r~LlVlDdv~~~~-------~~~~~~~p-~~~gs~iivTTR-~~~v--------~~~~~~~~~~~l~~L~~~~a 292 (798)
+.++.+.-+|++||+.... ++.....- ...|..||+||. .+.- ...+.....+.+++.+.+.-
T Consensus 189 ~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r 268 (440)
T PRK14088 189 EKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETR 268 (440)
T ss_pred HHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHH
Confidence 3344456689999997542 11111000 234567888885 3221 22334455789999999999
Q ss_pred HHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchH
Q 003753 293 WNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLA 328 (798)
Q Consensus 293 ~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 328 (798)
.+++++.+.......+ +++...|++.+.|.--.
T Consensus 269 ~~IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~ 301 (440)
T PRK14088 269 KKIARKMLEIEHGELP---EEVLNFVAENVDDNLRR 301 (440)
T ss_pred HHHHHHHHHhcCCCCC---HHHHHHHHhccccCHHH
Confidence 9999988764433333 35677788877765433
No 126
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.87 E-value=0.00011 Score=86.61 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=91.6
Q ss_pred CcccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhc--C-CCCeEEEEEcCCccCHHHHHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMS--H-KFGAVIMVKASTELNIEKIQDVIRSR 206 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~-~f~~~~wv~vs~~~~~~~~~~~i~~~ 206 (798)
+.++||+.+++++++.|......-+.++|.+|+|||++|+.+++...... . ..+..+|.. +...+. ..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~----a~ 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLL----AG 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHh----hh
Confidence 36899999999999999766666678999999999999999998863210 1 113344421 111111 00
Q ss_pred cCCCCCCCccccCCHHHHHHHHHHHhc-CCcEEEEEecccCcc----------cccccCCC--CCCCcEEEEeCCchHHh
Q 003753 207 LGIDPDGDKWKNRDDQGRAAEIFRRLS-NKKFALLLDDLRERI----------ELSEAGVP--VQNASKIVFTTIFEEVC 273 (798)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~r~LlVlDdv~~~~----------~~~~~~~p--~~~gs~iivTTR~~~v~ 273 (798)
. . ...+.++....+.+.++ .++.+|++|++.... +...+..| ....-++|-+|...+..
T Consensus 253 ~--~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~ 324 (731)
T TIGR02639 253 T--K------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYK 324 (731)
T ss_pred c--c------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHH
Confidence 0 0 11233444444444443 468899999987431 22233445 22233555555533221
Q ss_pred hh-------cCCCcceeccCCChHHHHHHHHHhc
Q 003753 274 SS-------MSVDWRFKVDYLPQEEAWNLFRLKV 300 (798)
Q Consensus 274 ~~-------~~~~~~~~l~~L~~~~a~~Lf~~~~ 300 (798)
.. ..-...+.++.++.++..++++...
T Consensus 325 ~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 325 NHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 11 0122468999999999999998654
No 127
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.0005 Score=74.54 Aligned_cols=173 Identities=13% Similarity=0.182 Sum_probs=98.3
Q ss_pred cccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhh-----cCCCCe-EEEEEcCCccCHHHHHHHH
Q 003753 131 NIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDM-----SHKFGA-VIMVKASTELNIEKIQDVI 203 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~~f~~-~~wv~vs~~~~~~~~~~~i 203 (798)
+++|.+..++.+.+.+..+.. +.+.++|+.|+||||+|+.+.+..... ...|.. ++-+.........+ .+.+
T Consensus 18 ~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~~l 96 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IRNL 96 (367)
T ss_pred hcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HHHH
Confidence 689999999999999987654 588899999999999999997765210 011211 11111111111111 1122
Q ss_pred HHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc--ccccC--CC-CCCCcEEEEeC-CchHHhhh-c
Q 003753 204 RSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE--LSEAG--VP-VQNASKIVFTT-IFEEVCSS-M 276 (798)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~--~~~~~--~p-~~~gs~iivTT-R~~~v~~~-~ 276 (798)
++++... -..+++-++|+|+++.... +..+. +. ....+.+|++| ....+... .
T Consensus 97 ~~~~~~~--------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 97 IDQVRIP--------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHhhc--------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH
Confidence 2211110 0123555899999875421 22210 11 12344555544 33333221 1
Q ss_pred CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCch
Q 003753 277 SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPL 327 (798)
Q Consensus 277 ~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 327 (798)
.....++++++++++....+.+.+.......+ .+.+..+++.++|.+-
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr 204 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALR 204 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHH
Confidence 22346899999999999888887754433222 3567788888888654
No 128
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00046 Score=77.55 Aligned_cols=195 Identities=13% Similarity=0.115 Sum_probs=107.1
Q ss_pred CcccchhHHHHHHHHHhhcCC-ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcC
Q 003753 130 NNIVGIESRLSEVWRYIEDDG-VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 208 (798)
.+++|-+..++.|.+.+..+. ...+.++|+.|+||||+|+.+++...- ....+. ..++.-...+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C-~~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC-ETAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc-cCCCCC-------CCCcccHHHHHHhcCCC
Confidence 368999999999999887765 467888999999999999998877621 010000 01111111111211100
Q ss_pred CCCCCCc-cccCCHHHHHHHHHHH-----hcCCcEEEEEecccCcc-----cccccCCCCCCCcEEEEeCCc-hHHhhhc
Q 003753 209 IDPDGDK-WKNRDDQGRAAEIFRR-----LSNKKFALLLDDLRERI-----ELSEAGVPVQNASKIVFTTIF-EEVCSSM 276 (798)
Q Consensus 209 ~~~~~~~-~~~~~~~~~~~~l~~~-----l~~~r~LlVlDdv~~~~-----~~~~~~~p~~~gs~iivTTR~-~~v~~~~ 276 (798)
.....-+ ......++ ++.+.+. ..+++-++|+|+++... .+.+..-.......+|++|.+ ..+...+
T Consensus 88 pDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 88 VDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred CceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 0000000 00011111 1122222 23566799999997652 122221101234555554544 4443221
Q ss_pred -CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc-hHHHHHHHHh
Q 003753 277 -SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP-LALVTIGSAM 336 (798)
Q Consensus 277 -~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~g~~l 336 (798)
.....+++.+++.++....+.+.+.......+ .+.++.|++.++|.+ .|+..+...+
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22357899999999999888887654332222 346788899999854 6777776554
No 129
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.83 E-value=0.00011 Score=78.64 Aligned_cols=107 Identities=20% Similarity=0.246 Sum_probs=72.6
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCC
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGID 210 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 210 (798)
++++.+..++.+...|... +.+.++|++|+|||++|+++++.. .....|+.+.||++++..+..+...-+ .
T Consensus 176 d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~------r 246 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGY------R 246 (459)
T ss_pred cccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhccc------C
Confidence 5788999999999988753 577889999999999999999887 334578889999999988877765422 1
Q ss_pred CCCCccccCCHHHHHHHHHHHhc--CCcEEEEEecccCc
Q 003753 211 PDGDKWKNRDDQGRAAEIFRRLS--NKKFALLLDDLRER 247 (798)
Q Consensus 211 ~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~ 247 (798)
+....+. ....-..+.+...-. ++++++|+|++...
T Consensus 247 P~~vgy~-~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 247 PNGVGFR-RKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CCCCCeE-ecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 1100000 001111122222222 47899999998754
No 130
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.82 E-value=0.0006 Score=69.05 Aligned_cols=194 Identities=15% Similarity=0.108 Sum_probs=114.5
Q ss_pred cccchh---HHHHHHHHHhhc---CCceEEEEEecCCchHHHHHHHHHHHhhhhcC---CCCeEEEEEcCCccCHHHHHH
Q 003753 131 NIVGIE---SRLSEVWRYIED---DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSH---KFGAVIMVKASTELNIEKIQD 201 (798)
Q Consensus 131 ~~vGr~---~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~wv~vs~~~~~~~~~~ 201 (798)
..||-. +.++++.++|.. ...+-+.|+|.+|.|||++++++...+....+ .--.++.|.+....+...+..
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~ 114 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYS 114 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHH
Confidence 355543 333444444433 34567999999999999999999987732111 011477888889999999999
Q ss_pred HHHHHcCCCCCCCccccCCHHHHHHHHHHHhcC-CcEEEEEecccCcc-----------cccccCCCCCCCcEEEEeCCc
Q 003753 202 VIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSN-KKFALLLDDLRERI-----------ELSEAGVPVQNASKIVFTTIF 269 (798)
Q Consensus 202 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~~~~-----------~~~~~~~p~~~gs~iivTTR~ 269 (798)
.|+.+++.+.. ...+.......+.+.++. +-=+||+|++.+.- ++.+...-.-.=+-|.+.|++
T Consensus 115 ~IL~~lgaP~~----~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 115 AILEALGAPYR----PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHhCcccC----CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 99999999874 234445555555566665 45589999997641 111111001122344555543
Q ss_pred --------hHHhhhcCCCcceeccCCChHH-HHHHHHHhccCc--ccCCChhHHHHHHHHHHHhCCCchHHHH
Q 003753 270 --------EEVCSSMSVDWRFKVDYLPQEE-AWNLFRLKVTDE--VLNSHPEIRELAETVANMCGGLPLALVT 331 (798)
Q Consensus 270 --------~~v~~~~~~~~~~~l~~L~~~~-a~~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~glPLai~~ 331 (798)
.+.+..+ .++.++.-+.++ ...|+......- ...++-...+++..|...++|+.=-+..
T Consensus 191 A~~al~~D~QLa~RF---~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 191 AYRALRTDPQLASRF---EPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HHHHhccCHHHHhcc---CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 3333332 355666665444 344443221110 1112223467899999999998754443
No 131
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.82 E-value=0.00022 Score=73.09 Aligned_cols=45 Identities=22% Similarity=0.345 Sum_probs=33.9
Q ss_pred cccchhHHHHHHHHHhh---------c------CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIE---------D------DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~---------~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++|.+..+++|.+... . +...-+.++|++|+||||+|+.+++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 57898877777654431 1 234568899999999999999998875
No 132
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.81 E-value=0.00066 Score=70.25 Aligned_cols=151 Identities=9% Similarity=0.085 Sum_probs=79.8
Q ss_pred cccchhHHHHHHHHHhh---------cC------CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccC
Q 003753 131 NIVGIESRLSEVWRYIE---------DD------GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELN 195 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~---------~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 195 (798)
.++|.+..+++|.++.. .- ...-+.++|.+|+||||+|+.++..... .......-|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~--- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTR--- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecH---
Confidence 47787776666655321 01 1225889999999999999888776632 12222122444442
Q ss_pred HHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc------cc-----ccc--CCC-CCCCc
Q 003753 196 IEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI------EL-----SEA--GVP-VQNAS 261 (798)
Q Consensus 196 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~------~~-----~~~--~~p-~~~gs 261 (798)
.++ ...+... ........+.+ . ..-+|+||++.... ++ ..+ .+. ...+.
T Consensus 99 -~~l----~~~~~g~---------~~~~~~~~~~~-a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~ 161 (284)
T TIGR02880 99 -DDL----VGQYIGH---------TAPKTKEILKR-A--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDL 161 (284)
T ss_pred -HHH----hHhhccc---------chHHHHHHHHH-c--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCE
Confidence 122 2211111 11122222222 2 33688999986320 11 111 011 33455
Q ss_pred EEEEeCCchHHhhhcC--------CCcceeccCCChHHHHHHHHHhccC
Q 003753 262 KIVFTTIFEEVCSSMS--------VDWRFKVDYLPQEEAWNLFRLKVTD 302 (798)
Q Consensus 262 ~iivTTR~~~v~~~~~--------~~~~~~l~~L~~~~a~~Lf~~~~~~ 302 (798)
+||+++.....-..+. ....+.+++++.+|-.+++...+..
T Consensus 162 ~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 162 VVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred EEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 7777765432211111 1346899999999999999887654
No 133
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00057 Score=77.51 Aligned_cols=193 Identities=17% Similarity=0.160 Sum_probs=106.0
Q ss_pred CcccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcCCCC--eEEEEEcCCccCHHHHHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFG--AVIMVKASTELNIEKIQDVIRSR 206 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~vs~~~~~~~~~~~i~~~ 206 (798)
.+++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++...- ..... ...+-.+.. -..-+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c-~~~~~~~~~~~~~cg~----c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY-EGPDGDGGPTIDLCGV----GEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCc-CCccccCCCccccCcc----cHHHHHHhcC
Confidence 3699999999999999987765 46889999999999999999887521 00000 000000000 0111222211
Q ss_pred cCCCCCCCc-cccCCHHHHHHHHHHHh-----cCCcEEEEEecccCccc--cccc----CCCCCCCcEEEE-eCCchHHh
Q 003753 207 LGIDPDGDK-WKNRDDQGRAAEIFRRL-----SNKKFALLLDDLRERIE--LSEA----GVPVQNASKIVF-TTIFEEVC 273 (798)
Q Consensus 207 l~~~~~~~~-~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~~--~~~~----~~p~~~gs~iiv-TTR~~~v~ 273 (798)
-....-.-+ ......++.. .+.+.+ .+++-++|+|+++.... ...+ .- ...++.+|+ ||....+.
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe-Pp~~~~fIl~tte~~kll 176 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE-PPPHVKFIFATTEIRKVP 176 (598)
T ss_pred CCCceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh-CCCCeEEEEEeCChhhhh
Confidence 100000000 0111122222 222222 24566899999875531 1111 11 234455554 55544443
Q ss_pred hhc-CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003753 274 SSM-SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTI 332 (798)
Q Consensus 274 ~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 332 (798)
... .....+++..++.++....+.+.+........ .+....|++.++|.+.-+...
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 222 23457899999999999999887754432222 356788899999988655443
No 134
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.80 E-value=0.00027 Score=77.62 Aligned_cols=154 Identities=20% Similarity=0.206 Sum_probs=92.5
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCC-CeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKF-GAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFR 230 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 230 (798)
..+.|+|..|+|||+|++.+++... +... ..+++++. .++...+...+... ..+ .+.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~--~~~~~~~v~yi~~------~~~~~~~~~~~~~~---------~~~----~~~~ 195 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEIL--ENNPNAKVVYVSS------EKFTNDFVNALRNN---------KME----EFKE 195 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH--HhCCCCcEEEEEH------HHHHHHHHHHHHcC---------CHH----HHHH
Confidence 5689999999999999999999873 2222 34566643 33444454444211 112 2233
Q ss_pred HhcCCcEEEEEecccCccc---ccccCCC-----CCCCcEEEEeCCch-H--------HhhhcCCCcceeccCCChHHHH
Q 003753 231 RLSNKKFALLLDDLRERIE---LSEAGVP-----VQNASKIVFTTIFE-E--------VCSSMSVDWRFKVDYLPQEEAW 293 (798)
Q Consensus 231 ~l~~~r~LlVlDdv~~~~~---~~~~~~p-----~~~gs~iivTTR~~-~--------v~~~~~~~~~~~l~~L~~~~a~ 293 (798)
.+++ .-+|||||++.... +....+. ...|..+|+||... . +...+.....+.+++.+.++-.
T Consensus 196 ~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~ 274 (405)
T TIGR00362 196 KYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRL 274 (405)
T ss_pred HHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHH
Confidence 3332 34888999975321 1111111 23456788888642 1 2233334457899999999999
Q ss_pred HHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHH
Q 003753 294 NLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALV 330 (798)
Q Consensus 294 ~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 330 (798)
.++.+.+.......+ +++...|++.+.|..-.+.
T Consensus 275 ~il~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 275 AILQKKAEEEGLELP---DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHH
Confidence 999988865443322 4567778888777665433
No 135
>CHL00181 cbbX CbbX; Provisional
Probab=97.80 E-value=0.00062 Score=70.38 Aligned_cols=152 Identities=9% Similarity=0.136 Sum_probs=80.5
Q ss_pred cccchhHHHHHHHHHh---h-----c-------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccC
Q 003753 131 NIVGIESRLSEVWRYI---E-----D-------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELN 195 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L---~-----~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 195 (798)
+++|-+..+++|.++. . . .....+.++|.+|+||||+|+.+++.... ...-...-|+.++..
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~~~-- 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVTRD-- 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEecHH--
Confidence 4778776666554432 1 0 12235889999999999999999887522 111111124444421
Q ss_pred HHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc------cc-----ccc--CCC-CCCCc
Q 003753 196 IEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI------EL-----SEA--GVP-VQNAS 261 (798)
Q Consensus 196 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~------~~-----~~~--~~p-~~~gs 261 (798)
++.... .+ .........+.+. ..-+|++|++.... ++ ..+ .+. ...+.
T Consensus 101 --~l~~~~---~g----------~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~ 162 (287)
T CHL00181 101 --DLVGQY---IG----------HTAPKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDL 162 (287)
T ss_pred --HHHHHH---hc----------cchHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCE
Confidence 222111 11 1111122222222 23489999986520 11 111 011 23456
Q ss_pred EEEEeCCchHHhhhc--------CCCcceeccCCChHHHHHHHHHhccCc
Q 003753 262 KIVFTTIFEEVCSSM--------SVDWRFKVDYLPQEEAWNLFRLKVTDE 303 (798)
Q Consensus 262 ~iivTTR~~~v~~~~--------~~~~~~~l~~L~~~~a~~Lf~~~~~~~ 303 (798)
+||+++....+...+ .....+.+++++.+|..+++.+.+...
T Consensus 163 ~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 163 VVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred EEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 777777644332111 123468899999999999988877543
No 136
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00054 Score=80.47 Aligned_cols=186 Identities=12% Similarity=0.085 Sum_probs=101.4
Q ss_pred cccchhHHHHHHHHHhhcCCce-EEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 131 NIVGIESRLSEVWRYIEDDGVK-IIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
++||.+..++.|..++..+.+. .+.++|..|+||||+|+.+.+...- .+..... .+.. -..-+.|...-..
T Consensus 16 eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C-~~~~~~~---pCg~----C~sC~~~~~g~~~ 87 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNC-VEGPTST---PCGE----CDSCVALAPGGPG 87 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCc-ccCCCCC---CCcc----cHHHHHHHcCCCC
Confidence 6899999999999999876654 5789999999999999999887621 0110000 0000 0001111100000
Q ss_pred CCC--CCc-cccCCHHHHHHHHHHH-----hcCCcEEEEEecccCcc-----cccccCCCCCCCcEEE-EeCCchHHhhh
Q 003753 210 DPD--GDK-WKNRDDQGRAAEIFRR-----LSNKKFALLLDDLRERI-----ELSEAGVPVQNASKIV-FTTIFEEVCSS 275 (798)
Q Consensus 210 ~~~--~~~-~~~~~~~~~~~~l~~~-----l~~~r~LlVlDdv~~~~-----~~~~~~~p~~~gs~ii-vTTR~~~v~~~ 275 (798)
..+ ..+ ......++... +++. ..+++-++|||+++... .+.++.--....+.+| +||....+...
T Consensus 88 ~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~T 166 (824)
T PRK07764 88 SLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGT 166 (824)
T ss_pred CCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 000 000 00011222211 2221 23566688999998653 1222211122345555 45554455432
Q ss_pred c-CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchH
Q 003753 276 M-SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLA 328 (798)
Q Consensus 276 ~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 328 (798)
+ .-...|++..++.++..+++.+.+........ .+....|++.++|.+..
T Consensus 167 IrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id---~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 167 IRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE---PGVLPLVIRAGGGSVRD 217 (824)
T ss_pred HHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 2 23467899999999998888877644332222 34567889999997743
No 137
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00082 Score=76.84 Aligned_cols=173 Identities=16% Similarity=0.201 Sum_probs=103.3
Q ss_pred cccchhHHHHHHHHHhhcCCce-EEEEEecCCchHHHHHHHHHHHhhh--------------------hcCCCCeEEEEE
Q 003753 131 NIVGIESRLSEVWRYIEDDGVK-IIGLYGVRGVGKSTLLKQLNDTFSD--------------------MSHKFGAVIMVK 189 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~~f~~~~wv~ 189 (798)
+++|.+..++.|..++..+... .+.++|+.|+||||+|+.+.....- ...+|+. ..+.
T Consensus 18 ~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~ld 96 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HELD 96 (614)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEec
Confidence 6899999999999999877654 5789999999999999988776520 0113332 2222
Q ss_pred cCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc-----cccc-CCCCCCCcEE
Q 003753 190 ASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE-----LSEA-GVPVQNASKI 263 (798)
Q Consensus 190 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-----~~~~-~~p~~~gs~i 263 (798)
.+....++++. ++++++...+ ..+++=++|+|++..... +.+. .- ...++.+
T Consensus 97 ~~~~~~vd~Ir-~li~~~~~~P--------------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEe-pp~~tif 154 (614)
T PRK14971 97 AASNNSVDDIR-NLIEQVRIPP--------------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEE-PPSYAIF 154 (614)
T ss_pred ccccCCHHHHH-HHHHHHhhCc--------------------ccCCcEEEEEECcccCCHHHHHHHHHHHhC-CCCCeEE
Confidence 22222222222 2222221111 123455889999876531 2221 11 2234555
Q ss_pred EE-eCCchHHhhhc-CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHH
Q 003753 264 VF-TTIFEEVCSSM-SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLAL 329 (798)
Q Consensus 264 iv-TTR~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 329 (798)
|+ ||+...+.... .....+++.++++++....+.+.+........ .+.+..|++.++|..--+
T Consensus 155 IL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 155 ILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 54 55545543322 23467899999999999888887654433222 346788999999866433
No 138
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.79 E-value=0.00018 Score=85.79 Aligned_cols=153 Identities=17% Similarity=0.213 Sum_probs=91.9
Q ss_pred CcccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhc--C-CCCeEEEEEcCCccCHHHHHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMS--H-KFGAVIMVKASTELNIEKIQDVIRSR 206 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~-~f~~~~wv~vs~~~~~~~~~~~i~~~ 206 (798)
..++||+++++++++.|......-+.++|.+|+|||++|..++....... . .-+..+|. .+...++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-----l~~~~l~a----- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-----LDIGLLLA----- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-----eeHHHHhc-----
Confidence 36899999999999999765555667999999999999999988863211 0 11234442 12221111
Q ss_pred cCCCCCCCccccCCHHHHHHHHHHHhc-CCcEEEEEecccCcc---------cccccCCC--CCCCcEEEEeCCchHHhh
Q 003753 207 LGIDPDGDKWKNRDDQGRAAEIFRRLS-NKKFALLLDDLRERI---------ELSEAGVP--VQNASKIVFTTIFEEVCS 274 (798)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~r~LlVlDdv~~~~---------~~~~~~~p--~~~gs~iivTTR~~~v~~ 274 (798)
+... ..+.++....+.+.+. .++.+|++|++.... +...+..| ....-++|.+|..++...
T Consensus 249 -g~~~------~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~ 321 (821)
T CHL00095 249 -GTKY------RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRK 321 (821)
T ss_pred -cCCC------ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHH
Confidence 1111 1233444444444333 468999999986331 22233345 333456666666554321
Q ss_pred h-------cCCCcceeccCCChHHHHHHHHHh
Q 003753 275 S-------MSVDWRFKVDYLPQEEAWNLFRLK 299 (798)
Q Consensus 275 ~-------~~~~~~~~l~~L~~~~a~~Lf~~~ 299 (798)
. .....++.++..+.++...+++..
T Consensus 322 ~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 322 HIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1 112346788888999988887654
No 139
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.78 E-value=0.00039 Score=76.36 Aligned_cols=148 Identities=14% Similarity=0.151 Sum_probs=88.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRR 231 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 231 (798)
.-+.|+|..|+|||+|++.+++... .....+++++ ...+...+...+... . ...+++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~------~~~f~~~~~~~l~~~---------~----~~~f~~~ 199 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVR------SELFTEHLVSAIRSG---------E----MQRFRQF 199 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEee------HHHHHHHHHHHHhcc---------h----HHHHHHH
Confidence 5689999999999999999999873 2223455654 334444555444211 1 1223333
Q ss_pred hcCCcEEEEEecccCccc--c--cccCCC----CCCCcEEEEeCCch---------HHhhhcCCCcceeccCCChHHHHH
Q 003753 232 LSNKKFALLLDDLRERIE--L--SEAGVP----VQNASKIVFTTIFE---------EVCSSMSVDWRFKVDYLPQEEAWN 294 (798)
Q Consensus 232 l~~~r~LlVlDdv~~~~~--~--~~~~~p----~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~a~~ 294 (798)
++ +.-+|++||+..... + +.+... ...|..||+||... .+...+.....+.+++++.++-..
T Consensus 200 ~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~ 278 (445)
T PRK12422 200 YR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRS 278 (445)
T ss_pred cc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHH
Confidence 33 345888899865421 1 111111 22466788888542 223334455678999999999999
Q ss_pred HHHHhccCcccCCChhHHHHHHHHHHHhCCC
Q 003753 295 LFRLKVTDEVLNSHPEIRELAETVANMCGGL 325 (798)
Q Consensus 295 Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 325 (798)
++++++.......+ .++..-|+..+.|.
T Consensus 279 iL~~k~~~~~~~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 279 FLERKAEALSIRIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHhcCCC
Confidence 99988765433333 34455566655543
No 140
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.77 E-value=0.00037 Score=75.28 Aligned_cols=167 Identities=16% Similarity=0.203 Sum_probs=95.6
Q ss_pred cccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHH
Q 003753 131 NIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIE 197 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 197 (798)
++.|.+..+++|.+.+.- ...+-+.++|++|+|||++|+.+++.. ...| +.+.. .
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f---i~i~~------s 213 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF---IRVVG------S 213 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEeh------H
Confidence 688999999888876621 235678999999999999999999876 2332 22211 1
Q ss_pred HHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc------------cc----ccc-----CCC
Q 003753 198 KIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI------------EL----SEA-----GVP 256 (798)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~------------~~----~~~-----~~p 256 (798)
.+ .... ...........+.......+.+|++|+++... .. ..+ ++.
T Consensus 214 ~l----~~k~---------~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 214 EF----VQKY---------LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred HH----HHHh---------cchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 11 1111 01111122222233334578999999976421 00 011 011
Q ss_pred CCCCcEEEEeCCchHHhh-----hcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc
Q 003753 257 VQNASKIVFTTIFEEVCS-----SMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP 326 (798)
Q Consensus 257 ~~~gs~iivTTR~~~v~~-----~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 326 (798)
...+..||+||...+... ...-...+.++..+.++..++|..+..........+ ..++++.+.|.-
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 234567888887554321 112345688888899988888887765433222223 345566666654
No 141
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.77 E-value=0.00097 Score=74.64 Aligned_cols=152 Identities=19% Similarity=0.140 Sum_probs=93.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRR 231 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 231 (798)
..+.|+|..|+|||.|++.+++.... ...-..++|++ ..++..++...+.. .. ...+++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yit------aeef~~el~~al~~---------~~----~~~f~~~ 374 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVS------SEEFTNEFINSIRD---------GK----GDSFRRR 374 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEee------HHHHHHHHHHHHHh---------cc----HHHHHHH
Confidence 45899999999999999999998731 11123456664 33444444433321 11 1223333
Q ss_pred hcCCcEEEEEecccCcc---cccccCCC-----CCCCcEEEEeCCch---------HHhhhcCCCcceeccCCChHHHHH
Q 003753 232 LSNKKFALLLDDLRERI---ELSEAGVP-----VQNASKIVFTTIFE---------EVCSSMSVDWRFKVDYLPQEEAWN 294 (798)
Q Consensus 232 l~~~r~LlVlDdv~~~~---~~~~~~~p-----~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~a~~ 294 (798)
+++ .=+|||||+.... .+....+- ...|..|||||+.. .+...+...-++.++..+.+.-.+
T Consensus 375 y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~a 453 (617)
T PRK14086 375 YRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIA 453 (617)
T ss_pred hhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHH
Confidence 332 3578899997542 12221111 34467788888752 234445566788999999999999
Q ss_pred HHHHhccCcccCCChhHHHHHHHHHHHhCCCch
Q 003753 295 LFRLKVTDEVLNSHPEIRELAETVANMCGGLPL 327 (798)
Q Consensus 295 Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 327 (798)
++++++.......+ +++.+-|++.+.+..-
T Consensus 454 IL~kka~~r~l~l~---~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 454 ILRKKAVQEQLNAP---PEVLEFIASRISRNIR 483 (617)
T ss_pred HHHHHHHhcCCCCC---HHHHHHHHHhccCCHH
Confidence 99998865543333 3566667776665543
No 142
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=1.1e-05 Score=79.17 Aligned_cols=208 Identities=15% Similarity=0.125 Sum_probs=119.0
Q ss_pred CCCCcceeeeecccccccccH--HHHhcCCceeEEeCCCCcccccccccc-cCCCCCCEEEcCCCCC--cccCccccCCC
Q 003753 513 PCSPRLLTLLVRYTMIKEFEN--KFFKSMYALRVLDSSQNAKLSKLHVGE-GELIDLQYLNLSNTNI--CELPIGIKSCT 587 (798)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~--~~~~~l~~Lr~L~L~~~~~i~~lp~~i-~~L~~L~~L~Ls~~~i--~~lp~~i~~l~ 587 (798)
..++.++.|+|.+|.+.+..+ ..+.+|++|++|+|+.| .+..--.+. -.+.+|++|-|.++.+ +.....+..++
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 568899999999997775544 34689999999999999 554321222 2467899999999854 45566778889
Q ss_pred cccEEeCCCCCCcccc--cchhhcCC-CCCccccccCCCCCCccCCCCCCCcccccHHHh-ccCCCCCeeEEEEecccch
Q 003753 588 HLRTLLLDGTENLKAI--PVGMLSSL-LSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL-ESLKHLQEISVIILTIDSL 663 (798)
Q Consensus 588 ~L~~L~l~~~~~l~~l--p~~~i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L-~~l~~L~~L~l~~~~~~~~ 663 (798)
.++.|+++.|. +..+ ..+-+... +.+++|+...|....| .....+ .-++++..+-+..+.....
T Consensus 147 ~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w-----------~~~~~l~r~Fpnv~sv~v~e~PlK~~ 214 (418)
T KOG2982|consen 147 KVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLW-----------LNKNKLSRIFPNVNSVFVCEGPLKTE 214 (418)
T ss_pred hhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHH-----------HHHHhHHhhcccchheeeecCcccch
Confidence 99999998884 3322 11112222 2455565555533211 011111 1234555444433322222
Q ss_pred hhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCC---CcccCCCCccEEEeecCCchhhhhccccccCCCCc
Q 003753 664 NKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDL---TCIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEE 740 (798)
Q Consensus 664 ~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l---~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~ 740 (798)
..-..+ ..+ +.+.-|+|+.+++.++ ..+..++.|..|.+++++..+.+-+ ++....
T Consensus 215 s~ek~s----------------e~~-p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~----~err~l 273 (418)
T KOG2982|consen 215 SSEKGS----------------EPF-PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG----GERRFL 273 (418)
T ss_pred hhcccC----------------CCC-CcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC----CcceEE
Confidence 211111 223 5566677776655443 3466778888888887766554422 222222
Q ss_pred ccccccccceeecC
Q 003753 741 NLSMFLHLRQAYFF 754 (798)
Q Consensus 741 ~~~~~~~L~~L~L~ 754 (798)
.+..+++++.|+=+
T Consensus 274 lIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 274 LIARLTKVQVLNGS 287 (418)
T ss_pred EEeeccceEEecCc
Confidence 34556666666543
No 143
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.77 E-value=3.7e-06 Score=72.97 Aligned_cols=92 Identities=20% Similarity=0.152 Sum_probs=66.9
Q ss_pred CCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCccccCCCcccEE
Q 003753 513 PCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKSCTHLRTL 592 (798)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L 592 (798)
.....|...++++|.++++|+.+-..++.+..|+|++| .+..+|..+..++.|+.|+++.|.+...|..+..|.+|-.|
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 44556677777777777777776566667777777777 77777777777777777777777777777777777777777
Q ss_pred eCCCCCCcccccch
Q 003753 593 LLDGTENLKAIPVG 606 (798)
Q Consensus 593 ~l~~~~~l~~lp~~ 606 (798)
+..+|. ...+|-+
T Consensus 129 ds~~na-~~eid~d 141 (177)
T KOG4579|consen 129 DSPENA-RAEIDVD 141 (177)
T ss_pred cCCCCc-cccCcHH
Confidence 777765 5566654
No 144
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00092 Score=75.43 Aligned_cols=195 Identities=14% Similarity=0.110 Sum_probs=104.9
Q ss_pred CcccchhHHHHHHHHHhhcCCce-EEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcC
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVK-IIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 208 (798)
.++||.+..++.|..++..+.+. .+.++|+.|+||||+|+.+++...- .+..+ +- .+..-..-+.|...-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c-~~~~~---~~----pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC-AQGPT---AT----PCGVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc-ccCCC---CC----cccccHHHHHhhcccC
Confidence 36999999999999999887655 5689999999999999999876521 01000 00 0000011111110000
Q ss_pred CCCCC---CccccCCHHHH---HHHHHHH-hcCCcEEEEEecccCcc--c---cccc-CCCCCCCcEEE-EeCCchHHhh
Q 003753 209 IDPDG---DKWKNRDDQGR---AAEIFRR-LSNKKFALLLDDLRERI--E---LSEA-GVPVQNASKIV-FTTIFEEVCS 274 (798)
Q Consensus 209 ~~~~~---~~~~~~~~~~~---~~~l~~~-l~~~r~LlVlDdv~~~~--~---~~~~-~~p~~~gs~ii-vTTR~~~v~~ 274 (798)
...+- +.......++. ...+... ..+++-++|+|++.... . +.+. .- ......+| +||....+..
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE-pp~~~~fIL~tte~~kll~ 163 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE-PPEHLIFIFATTEPEKVLP 163 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc-CCCCeEEEEEeCChHhhHH
Confidence 00000 00000111111 1111111 13456689999987542 1 1111 11 22344444 5555555433
Q ss_pred h-cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc-hHHHHHHHHh
Q 003753 275 S-MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP-LALVTIGSAM 336 (798)
Q Consensus 275 ~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~g~~l 336 (798)
. ..-...+++..++.++..+.+.+.+.......+ .+....|++.++|.+ -|+..+-..+
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2 223467899999999998888876654332222 345677888999877 4555554444
No 145
>PRK06620 hypothetical protein; Validated
Probab=97.77 E-value=0.00013 Score=71.82 Aligned_cols=131 Identities=13% Similarity=0.059 Sum_probs=77.9
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRR 231 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 231 (798)
+.+.|+|++|+|||+|++.+++.. .. .++. ..+. .. +.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~------------------------~~--------~~ 82 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF------------------------NE--------EI 82 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh------------------------ch--------hH
Confidence 569999999999999999876654 11 1111 0000 00 01
Q ss_pred hcCCcEEEEEecccCccc--ccccCCC-CCCCcEEEEeCCchH-------HhhhcCCCcceeccCCChHHHHHHHHHhcc
Q 003753 232 LSNKKFALLLDDLRERIE--LSEAGVP-VQNASKIVFTTIFEE-------VCSSMSVDWRFKVDYLPQEEAWNLFRLKVT 301 (798)
Q Consensus 232 l~~~r~LlVlDdv~~~~~--~~~~~~p-~~~gs~iivTTR~~~-------v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~ 301 (798)
+ +..-++++||+....+ +-.+..- ...|..||+|++... ....+...-+++++++++++-..++++.+.
T Consensus 83 ~-~~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 83 L-EKYNAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred H-hcCCEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 1 1234788999974322 1111000 356778999987432 233344555789999999998888887765
Q ss_pred CcccCCChhHHHHHHHHHHHhCCCchH
Q 003753 302 DEVLNSHPEIRELAETVANMCGGLPLA 328 (798)
Q Consensus 302 ~~~~~~~~~~~~~~~~i~~~c~glPLa 328 (798)
......+ +++..-|++.+.|.--+
T Consensus 162 ~~~l~l~---~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 162 ISSVTIS---RQIIDFLLVNLPREYSK 185 (214)
T ss_pred HcCCCCC---HHHHHHHHHHccCCHHH
Confidence 4322222 34666777776655433
No 146
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00092 Score=74.28 Aligned_cols=174 Identities=14% Similarity=0.178 Sum_probs=103.2
Q ss_pred CcccchhHHHHHHHHHhhcCCce-EEEEEecCCchHHHHHHHHHHHhhhhc-CC----------------CC-eEEEEEc
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVK-IIGLYGVRGVGKSTLLKQLNDTFSDMS-HK----------------FG-AVIMVKA 190 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~----------------f~-~~~wv~v 190 (798)
.+++|-+..++.+...+..+... +..++|+.|+||||+|+.+++..-... .. +. .++.+..
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~elda 93 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDA 93 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecc
Confidence 36999999999999999877655 568999999999999998877652100 00 00 1122221
Q ss_pred CCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHH----hcCCcEEEEEecccCccc--cccc----CCCCCCC
Q 003753 191 STELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRR----LSNKKFALLLDDLRERIE--LSEA----GVPVQNA 260 (798)
Q Consensus 191 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~~~~--~~~~----~~p~~~g 260 (798)
+....+ ++....+... ..+++-++|+|+++.... ...+ -- ....
T Consensus 94 as~~gI-------------------------d~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE-pp~~ 147 (535)
T PRK08451 94 ASNRGI-------------------------DDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE-PPSY 147 (535)
T ss_pred ccccCH-------------------------HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhh-cCCc
Confidence 111112 2222222110 124566889999876531 1111 11 2345
Q ss_pred cEEEEeCCch-HHhhh-cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003753 261 SKIVFTTIFE-EVCSS-MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTI 332 (798)
Q Consensus 261 s~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 332 (798)
+++|++|.+. .+... ..-...+++.+++.++....+.+.+.......+ .+.+..|++.++|.+--+...
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~---~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE---PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 6666666543 22111 112457899999999999888877654432222 356788999999988544443
No 147
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.76 E-value=0.00049 Score=73.06 Aligned_cols=142 Identities=11% Similarity=0.126 Sum_probs=80.5
Q ss_pred CcccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcC
Q 003753 130 NNIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 208 (798)
.+++|.+...+.+.+++..+.. .++.++|++|+||||+|+.+++.. .. ....++.+. .....+...+.....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~---~~~~i~~~~-~~~~~i~~~l~~~~~ 93 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GA---EVLFVNGSD-CRIDFVRNRLTRFAS 93 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Cc---cceEeccCc-ccHHHHHHHHHHHHH
Confidence 3689999999999999977654 577779999999999999998875 22 123444443 122221111111000
Q ss_pred CCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc--cccccC---CC-CCCCcEEEEeCCchHH-hhh-cCCCc
Q 003753 209 IDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI--ELSEAG---VP-VQNASKIVFTTIFEEV-CSS-MSVDW 280 (798)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~--~~~~~~---~p-~~~gs~iivTTR~~~v-~~~-~~~~~ 280 (798)
. ..+.+.+-++|+||++... +..... +. ...++++|+||....- ... .....
T Consensus 94 ~--------------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 94 T--------------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred h--------------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 0 0012345688999997551 111110 11 3456788888865431 110 01123
Q ss_pred ceeccCCChHHHHHHHHH
Q 003753 281 RFKVDYLPQEEAWNLFRL 298 (798)
Q Consensus 281 ~~~l~~L~~~~a~~Lf~~ 298 (798)
.+.++..+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 566666677776665543
No 148
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.76 E-value=1.7e-05 Score=91.18 Aligned_cols=105 Identities=26% Similarity=0.265 Sum_probs=50.7
Q ss_pred CceeEEeCCCCcccccc-ccccc-CCCCCCEEEcCCCCCc--ccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCc
Q 003753 540 YALRVLDSSQNAKLSKL-HVGEG-ELIDLQYLNLSNTNIC--ELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLR 615 (798)
Q Consensus 540 ~~Lr~L~L~~~~~i~~l-p~~i~-~L~~L~~L~Ls~~~i~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~ 615 (798)
.+|++||++|...+..- |..++ .||.|+.|.+++-.+. .+-.-..++++|..||++++. ++.+ .+ +++|++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~G-IS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SG-ISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HH-HhccccHH
Confidence 45555555554222211 22232 3455666655554321 122223345556666666554 5555 23 56666666
Q ss_pred cccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEe
Q 003753 616 VFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIIL 658 (798)
Q Consensus 616 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~ 658 (798)
+|.+.+-.+. +...+.+|-+|++|+.|+++..
T Consensus 199 ~L~mrnLe~e-----------~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 199 VLSMRNLEFE-----------SYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HHhccCCCCC-----------chhhHHHHhcccCCCeeecccc
Confidence 6665543333 2334555555666666666533
No 149
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.76 E-value=0.00015 Score=78.71 Aligned_cols=167 Identities=18% Similarity=0.232 Sum_probs=95.4
Q ss_pred cccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHH
Q 003753 131 NIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIE 197 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 197 (798)
++.|.+..++++.+.+.- ...+-+.++|++|+|||++|+.+++.. ...| +.+..+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f---i~V~~se----- 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF---LRVVGSE----- 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE---EEEecch-----
Confidence 577999999998887731 234568899999999999999999976 3333 2221111
Q ss_pred HHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc----------------cccc-----CCC
Q 003753 198 KIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE----------------LSEA-----GVP 256 (798)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~----------------~~~~-----~~p 256 (798)
+.. .. ...........+.....+.+.+|+||+++.... +..+ ++.
T Consensus 253 -L~~----k~---------~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 253 -LIQ----KY---------LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred -hhh----hh---------cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 111 10 111111122222233345778999999764210 0000 001
Q ss_pred CCCCcEEEEeCCchHHhhh--c---CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc
Q 003753 257 VQNASKIVFTTIFEEVCSS--M---SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP 326 (798)
Q Consensus 257 ~~~gs~iivTTR~~~v~~~--~---~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 326 (798)
...+.+||+||...+.... . .....+.++..+.++..++|..++.........++ ..++..+.|+-
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~s 389 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDELS 389 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCCC
Confidence 2345678888875544321 1 23457899999999999999987754432222333 34455555543
No 150
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.75 E-value=0.00028 Score=78.49 Aligned_cols=155 Identities=18% Similarity=0.180 Sum_probs=93.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFR 230 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 230 (798)
..-+.|+|..|+|||+|++.+++.... ...-..+++++.. ++...+...+... .. ..+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~-~~~~~~v~yi~~~------~~~~~~~~~~~~~---------~~----~~~~~ 207 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILE-KNPNAKVVYVTSE------KFTNDFVNALRNN---------TM----EEFKE 207 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEEEHH------HHHHHHHHHHHcC---------cH----HHHHH
Confidence 356899999999999999999998731 1112345666433 3334444443211 11 22333
Q ss_pred HhcCCcEEEEEecccCccc---cc-ccC---CC-CCCCcEEEEeCCchH---------HhhhcCCCcceeccCCChHHHH
Q 003753 231 RLSNKKFALLLDDLRERIE---LS-EAG---VP-VQNASKIVFTTIFEE---------VCSSMSVDWRFKVDYLPQEEAW 293 (798)
Q Consensus 231 ~l~~~r~LlVlDdv~~~~~---~~-~~~---~p-~~~gs~iivTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~ 293 (798)
.++ +.-+||+||++.... .. .+. .. ...|..||+||.... +...+.....+++++.+.++-.
T Consensus 208 ~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~ 286 (450)
T PRK00149 208 KYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRI 286 (450)
T ss_pred HHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHH
Confidence 344 344899999975321 11 110 01 234566888886432 2334445567899999999999
Q ss_pred HHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHH
Q 003753 294 NLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLAL 329 (798)
Q Consensus 294 ~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 329 (798)
.++++.+.......+ +++...|++.+.|..-.+
T Consensus 287 ~il~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 287 AILKKKAEEEGIDLP---DEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHH
Confidence 999998865432223 356778888888776543
No 151
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00092 Score=75.99 Aligned_cols=197 Identities=13% Similarity=0.105 Sum_probs=104.4
Q ss_pred cccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEE-cCCccCHHHHHHHHHHHcC
Q 003753 131 NIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVK-ASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-vs~~~~~~~~~~~i~~~l~ 208 (798)
++||.+..++.|.+.+..+.+ ..+.++|+.|+||||+|+.+++...- ....+.-.|.. +...+..-..-+.+...-.
T Consensus 17 eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c-~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~ 95 (620)
T PRK14954 17 DITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC-QRMIDDPVYLQEVTEPCGECESCRDFDAGTS 95 (620)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC-CCcCCccccccccCCCCccCHHHHHHhccCC
Confidence 689999999999999877665 45889999999999999999877621 11111011111 0011111111111111000
Q ss_pred CCCCCCcc-ccCCHHHHHHHHHHH----hcCCcEEEEEecccCccc-----cccc-CCCCCCCcEEE-EeCCchHHhhh-
Q 003753 209 IDPDGDKW-KNRDDQGRAAEIFRR----LSNKKFALLLDDLRERIE-----LSEA-GVPVQNASKIV-FTTIFEEVCSS- 275 (798)
Q Consensus 209 ~~~~~~~~-~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~~~~-----~~~~-~~p~~~gs~ii-vTTR~~~v~~~- 275 (798)
......+. .....+++...+... ..+++-++|+|+++.... +.+. .-| ...+.+| +|++...+...
T Consensus 96 ~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEeP-p~~tv~IL~t~~~~kLl~TI 174 (620)
T PRK14954 96 LNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEP-PPHAIFIFATTELHKIPATI 174 (620)
T ss_pred CCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCC-CCCeEEEEEeCChhhhhHHH
Confidence 00000000 011122332222111 234566889999876531 2221 112 2334444 55554444332
Q ss_pred cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCch-HHHHH
Q 003753 276 MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPL-ALVTI 332 (798)
Q Consensus 276 ~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 332 (798)
......+++.+++.++....+.+.+.......+ .+.++.|++.++|..- |+..+
T Consensus 175 ~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 175 ASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred HhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHH
Confidence 234567899999999988888776643322222 3467889999999554 44433
No 152
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.74 E-value=5.1e-06 Score=72.10 Aligned_cols=106 Identities=22% Similarity=0.216 Sum_probs=84.7
Q ss_pred cceeeeecccccccccHH--HHhcCCceeEEeCCCCcccccccccccCC-CCCCEEEcCCCCCcccCccccCCCcccEEe
Q 003753 517 RLLTLLVRYTMIKEFENK--FFKSMYALRVLDSSQNAKLSKLHVGEGEL-IDLQYLNLSNTNICELPIGIKSCTHLRTLL 593 (798)
Q Consensus 517 ~L~~L~l~~~~~~~l~~~--~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L-~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~ 593 (798)
.+..++|++|.+..+++. .+....+|...+|++| .++.+|+.+... +.+++|++++|.|..+|..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 344567777766656543 2556688888999999 999998877654 489999999999999999999999999999
Q ss_pred CCCCCCcccccchhhcCCCCCccccccCCCCC
Q 003753 594 LDGTENLKAIPVGMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 594 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 625 (798)
++.|. +...|.- +..|.+|-.|+..+|...
T Consensus 107 l~~N~-l~~~p~v-i~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 107 LRFNP-LNAEPRV-IAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccCc-cccchHH-HHHHHhHHHhcCCCCccc
Confidence 99998 7778865 667888888888777654
No 153
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.0011 Score=73.15 Aligned_cols=176 Identities=16% Similarity=0.238 Sum_probs=100.5
Q ss_pred cccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhc--------------------CCCCeEEEEE
Q 003753 131 NIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMS--------------------HKFGAVIMVK 189 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~f~~~~wv~ 189 (798)
+++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.+++...... .+++ .+++.
T Consensus 18 diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i~ 96 (451)
T PRK06305 18 EILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEID 96 (451)
T ss_pred HhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEee
Confidence 699999999999999987665 5688999999999999999987652100 0111 11111
Q ss_pred cCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc-----cccc-CCCCCCCcEE
Q 003753 190 ASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE-----LSEA-GVPVQNASKI 263 (798)
Q Consensus 190 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-----~~~~-~~p~~~gs~i 263 (798)
......++++ +++.+.+.. ....+++-++|+|+++.... +.+. .-| ..+..+
T Consensus 97 g~~~~gid~i-r~i~~~l~~--------------------~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep-~~~~~~ 154 (451)
T PRK06305 97 GASHRGIEDI-RQINETVLF--------------------TPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP-PQHVKF 154 (451)
T ss_pred ccccCCHHHH-HHHHHHHHh--------------------hhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC-CCCceE
Confidence 1011111111 011111100 01135677889999875421 2222 122 235556
Q ss_pred EEeC-CchHHhhh-cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCch-HHHHH
Q 003753 264 VFTT-IFEEVCSS-MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPL-ALVTI 332 (798)
Q Consensus 264 ivTT-R~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 332 (798)
|++| +...+... ......+++.++++++....+.+.+.......+ .+.++.|++.++|.+- |+..+
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS---REALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 6555 33333221 123357899999999998888877654322222 3467889999998664 44443
No 154
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.00097 Score=76.21 Aligned_cols=186 Identities=16% Similarity=0.186 Sum_probs=101.9
Q ss_pred cccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 131 NIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
+++|.+..++.|.+++..+++ +.+.++|+.|+||||+|+.++....- .+.. ..+-.+.. . ... .+.
T Consensus 19 dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC--~~~~-~~~~pC~~------C-~~~---~~~ 85 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNC--SHKT-DLLEPCQE------C-IEN---VNN 85 (725)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc--cccC-CCCCchhH------H-HHh---hcC
Confidence 689999999999999987664 46679999999999999999876521 1100 00000000 0 000 000
Q ss_pred CCCC---CccccCCHHHHHHHHHHHh-----cCCcEEEEEecccCcc--ccccc----CCCCCCCcEEEEeCCchHHhhh
Q 003753 210 DPDG---DKWKNRDDQGRAAEIFRRL-----SNKKFALLLDDLRERI--ELSEA----GVPVQNASKIVFTTIFEEVCSS 275 (798)
Q Consensus 210 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~--~~~~~----~~p~~~gs~iivTTR~~~v~~~ 275 (798)
..+- ........++ ++.+.+.+ .+++-++|+|++.... .+..+ .-|.....-|++||+...+...
T Consensus 86 ~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 86 SLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 0000 0000011121 22222222 3566799999987542 12111 1222223334556555555332
Q ss_pred -cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCch-HHHHHH
Q 003753 276 -MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPL-ALVTIG 333 (798)
Q Consensus 276 -~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~g 333 (798)
......+++.+++.++....+...+........ .+.+..|++.++|.+- |+..+-
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 223468899999999999888876543332222 3457789999988764 444433
No 155
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.69 E-value=0.0033 Score=66.59 Aligned_cols=201 Identities=14% Similarity=0.198 Sum_probs=128.4
Q ss_pred hhHHHHHHHHHhhcCCceEEEEEecCCchHHHHH-HHHHHHhhhhcCCCCeEEEEEcCC---ccCHHHHHHHHHHHcCCC
Q 003753 135 IESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLL-KQLNDTFSDMSHKFGAVIMVKAST---ELNIEKIQDVIRSRLGID 210 (798)
Q Consensus 135 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~vs~---~~~~~~~~~~i~~~l~~~ 210 (798)
|.+.+++|..||.+..-..|.|.|+-|+||+.|+ .++..+. +.+..+++.+ ..+-...+..++.++|..
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5678899999999888899999999999999999 7776654 1266676543 234566667777776654
Q ss_pred CC-------------------CCcc-ccCCHHHHHHHHHH----Hhc--------------------------CCcEEEE
Q 003753 211 PD-------------------GDKW-KNRDDQGRAAEIFR----RLS--------------------------NKKFALL 240 (798)
Q Consensus 211 ~~-------------------~~~~-~~~~~~~~~~~l~~----~l~--------------------------~~r~LlV 240 (798)
+- +.+. -..+.+.....+.+ .|+ .+|=++|
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 31 0000 01122222211111 111 1266899
Q ss_pred EecccCcc-----------cccccCCCCCCCcEEEEeCCchHHhh----hcC--CCcceeccCCChHHHHHHHHHhccCc
Q 003753 241 LDDLRERI-----------ELSEAGVPVQNASKIVFTTIFEEVCS----SMS--VDWRFKVDYLPQEEAWNLFRLKVTDE 303 (798)
Q Consensus 241 lDdv~~~~-----------~~~~~~~p~~~gs~iivTTR~~~v~~----~~~--~~~~~~l~~L~~~~a~~Lf~~~~~~~ 303 (798)
+||..... +|... +-..+-.+||++|-+..... .+. ....+.|...+.+.|..+...+....
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~-Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAAS-LVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHH-HHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 99986542 22221 11456678999998765533 332 34578899999999999999988654
Q ss_pred ccC------------CC-----hhHHHHHHHHHHHhCCCchHHHHHHHHhcCCCChh
Q 003753 304 VLN------------SH-----PEIRELAETVANMCGGLPLALVTIGSAMASRRDPD 343 (798)
Q Consensus 304 ~~~------------~~-----~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~ 343 (798)
... .+ .....-....+..+||=-.=+..+++.++...++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 233 TEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 210 00 12334456778889999999999999998765543
No 156
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.0018 Score=71.89 Aligned_cols=173 Identities=15% Similarity=0.197 Sum_probs=100.0
Q ss_pred cccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhh--cC----------------CCCeEEEEEcC
Q 003753 131 NIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDM--SH----------------KFGAVIMVKAS 191 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~----------------~f~~~~wv~vs 191 (798)
+++|.+..++.+.+++..+.. +.+.++|+.|+||||+|+.++...... .. .|..++++..+
T Consensus 17 diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaa 96 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAA 96 (486)
T ss_pred HccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCc
Confidence 689999999999999977654 456789999999999999988765210 00 01111222111
Q ss_pred CccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHH-----hcCCcEEEEEecccCcc--c---cccc-CCCCCCC
Q 003753 192 TELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRR-----LSNKKFALLLDDLRERI--E---LSEA-GVPVQNA 260 (798)
Q Consensus 192 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-----l~~~r~LlVlDdv~~~~--~---~~~~-~~p~~~g 260 (798)
... ..++ ++.+.+. ..+++-++|+|+++... . +.+. .-| ...
T Consensus 97 s~~-------------------------gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep-p~~ 149 (486)
T PRK14953 97 SNR-------------------------GIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP-PPR 149 (486)
T ss_pred cCC-------------------------CHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC-CCC
Confidence 111 1111 1122222 23566799999987542 1 1111 222 223
Q ss_pred cEEE-EeCCchHHhhh-cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHH
Q 003753 261 SKIV-FTTIFEEVCSS-MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIG 333 (798)
Q Consensus 261 s~ii-vTTR~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 333 (798)
..+| .||+...+... ......+.+.+++.++....+.+.+.......+ .+.+..|+..++|.+-.+....
T Consensus 150 ~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id---~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 150 TIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE---EKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred eEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 4444 45554444322 123357899999999998888876654332222 3456778888888765444433
No 157
>PF14516 AAA_35: AAA-like domain
Probab=97.67 E-value=0.0035 Score=66.54 Aligned_cols=199 Identities=14% Similarity=0.185 Sum_probs=119.4
Q ss_pred CcccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc-----cCHHHHHHH--
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE-----LNIEKIQDV-- 202 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-----~~~~~~~~~-- 202 (798)
+..|+|...-+++.+.|.+. ...+.|.|+-.+|||+|..++.+... +..+. ++++++..- .+.+..++.
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~--~~~~~-~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQ--QQGYR-CVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHH--HCCCE-EEEEEeecCCCcccCCHHHHHHHHH
Confidence 35779997778888887663 36899999999999999999988873 23444 446765431 245555544
Q ss_pred --HHHHcCCCCCC-Cccc--cCCHHHHHHHHHHHh-c--CCcEEEEEecccCccccc----cc----------CCC-CCC
Q 003753 203 --IRSRLGIDPDG-DKWK--NRDDQGRAAEIFRRL-S--NKKFALLLDDLRERIELS----EA----------GVP-VQN 259 (798)
Q Consensus 203 --i~~~l~~~~~~-~~~~--~~~~~~~~~~l~~~l-~--~~r~LlVlDdv~~~~~~~----~~----------~~p-~~~ 259 (798)
|.++++....- ..|. ..........+.+.+ . +++.+|+||+|+...+.. ++ ... ...
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~ 166 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW 166 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc
Confidence 44555544310 0011 112223333344432 2 589999999998653211 11 000 011
Q ss_pred Cc-E-EEEeCCchHHh-h----hcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003753 260 AS-K-IVFTTIFEEVC-S----SMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTI 332 (798)
Q Consensus 260 gs-~-iivTTR~~~v~-~----~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 332 (798)
.+ + |++.+...... . -+.....++|++++.+|...|..++-..- . ....++|...+||+|.-+..+
T Consensus 167 ~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~----~---~~~~~~l~~~tgGhP~Lv~~~ 239 (331)
T PF14516_consen 167 QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF----S---QEQLEQLMDWTGGHPYLVQKA 239 (331)
T ss_pred ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC----C---HHHHHHHHHHHCCCHHHHHHH
Confidence 11 1 22222111111 1 12234578999999999999998764321 1 122889999999999999999
Q ss_pred HHHhcCC
Q 003753 333 GSAMASR 339 (798)
Q Consensus 333 g~~l~~~ 339 (798)
+..+..+
T Consensus 240 ~~~l~~~ 246 (331)
T PF14516_consen 240 CYLLVEE 246 (331)
T ss_pred HHHHHHc
Confidence 9999763
No 158
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.00055 Score=78.41 Aligned_cols=193 Identities=15% Similarity=0.124 Sum_probs=105.9
Q ss_pred CcccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcC
Q 003753 130 NNIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 208 (798)
.+++|.+..++.|..++..+.. ..+.++|..|+||||+|+.+++...- ..... ....+......+.|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c-~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC-TTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC-CCCCC------CCCCCccCHHHHHHhcCCC
Confidence 3699999999999999877654 46689999999999999999877621 00000 0011111222333322111
Q ss_pred CCCCCCcc-ccCCHHHHHHHHHHHh-----cCCcEEEEEecccCcc--cccccC--CC-CCCCcEEEEeC-CchHHhhhc
Q 003753 209 IDPDGDKW-KNRDDQGRAAEIFRRL-----SNKKFALLLDDLRERI--ELSEAG--VP-VQNASKIVFTT-IFEEVCSSM 276 (798)
Q Consensus 209 ~~~~~~~~-~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~--~~~~~~--~p-~~~gs~iivTT-R~~~v~~~~ 276 (798)
...-..+. .....++. +.+.+.+ .+++-++|+|+++... ....+. +. ....+.+|++| ....+....
T Consensus 89 ~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 89 VDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 10000000 01112222 2222222 2456789999987542 122221 11 22345555555 333333211
Q ss_pred -CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHH
Q 003753 277 -SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIG 333 (798)
Q Consensus 277 -~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 333 (798)
.....+.+..++.++....+.+.+.......+ .+.+..|++.++|.+..+...-
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 22356789999999988888887755432222 3567889999999886554443
No 159
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.63 E-value=0.00031 Score=81.79 Aligned_cols=154 Identities=15% Similarity=0.190 Sum_probs=90.8
Q ss_pred CcccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCC---CCeEEEEEcCCccCHHHHHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHK---FGAVIMVKASTELNIEKIQDVIRSR 206 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~vs~~~~~~~~~~~i~~~ 206 (798)
..++||+.+++++++.|......-+.++|.+|+|||++|+.++.......-. .++.+|.. +...+ +.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la- 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA- 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc-
Confidence 3689999999999999976544556789999999999999998875221111 24445521 11111 10
Q ss_pred cCCCCCCCccccCCHHHHHHHHHHHh-cCCcEEEEEecccCc----------ccccccCCC--CCCCcEEEEeCCchHHh
Q 003753 207 LGIDPDGDKWKNRDDQGRAAEIFRRL-SNKKFALLLDDLRER----------IELSEAGVP--VQNASKIVFTTIFEEVC 273 (798)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~----------~~~~~~~~p--~~~gs~iivTTR~~~v~ 273 (798)
+.. ...+.+.....+.+.+ +.++.+|++|++... .+...+..| ....-++|-+|..++..
T Consensus 256 -G~~------~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~ 328 (758)
T PRK11034 256 -GTK------YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFS 328 (758)
T ss_pred -ccc------hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHH
Confidence 111 1123334444444444 346789999998743 122222334 23334555555544321
Q ss_pred hh-------cCCCcceeccCCChHHHHHHHHHhc
Q 003753 274 SS-------MSVDWRFKVDYLPQEEAWNLFRLKV 300 (798)
Q Consensus 274 ~~-------~~~~~~~~l~~L~~~~a~~Lf~~~~ 300 (798)
.. ..-.+.+.++..+.+++.++++...
T Consensus 329 ~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11 0122478999999999999988654
No 160
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.59 E-value=3e-05 Score=89.23 Aligned_cols=133 Identities=21% Similarity=0.190 Sum_probs=91.6
Q ss_pred chhceeeEEeecCCCCC-CCCCCC-CCCCcceeeeeccccccccc-HHHHhcCCceeEEeCCCCcccccccccccCCCCC
Q 003753 490 SWKEAVRVSLWRSPSID-SLSPTP-PCSPRLLTLLVRYTMIKEFE-NKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDL 566 (798)
Q Consensus 490 ~~~~l~~lsl~~~~~~~-~l~~~~-~~~~~L~~L~l~~~~~~~l~-~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L 566 (798)
...++++|++.+...+. ..|..+ .-+|.|++|.+.+-.+..-. ...+.++++|+.||+|++ +++.+ .+|++|+||
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNL 197 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccH
Confidence 34588999998762221 111112 56889999999886443211 233678899999999999 99988 779999999
Q ss_pred CEEEcCCCCCcccC--ccccCCCcccEEeCCCCCCcccccch------hhcCCCCCccccccCCCCC
Q 003753 567 QYLNLSNTNICELP--IGIKSCTHLRTLLLDGTENLKAIPVG------MLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 567 ~~L~Ls~~~i~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~~------~i~~L~~L~~L~l~~~~~~ 625 (798)
+.|.+.+=.+..-+ ..+.+|++|+.||+|...... -+.- .-..|++|+.|+.+++.+.
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchh
Confidence 99998886665432 367789999999998775322 2210 0124888999998876554
No 161
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.57 E-value=8.8e-05 Score=69.18 Aligned_cols=97 Identities=23% Similarity=0.252 Sum_probs=45.6
Q ss_pred eEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccc--ccccCCCCCCEEEcCC
Q 003753 496 RVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLH--VGEGELIDLQYLNLSN 573 (798)
Q Consensus 496 ~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp--~~i~~L~~L~~L~Ls~ 573 (798)
.+.+.+| .+..++ .++.+++|.+|.+.+|.++.|.+..-.-+++|..|.|.+| .|..+- ..+..++.|++|.+-+
T Consensus 46 ~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 46 AIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred eeccccc-chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeecC
Confidence 3444444 444444 4455555555555555555555543333444555555555 444432 1233444555555555
Q ss_pred CCCcccCc----cccCCCcccEEeCC
Q 003753 574 TNICELPI----GIKSCTHLRTLLLD 595 (798)
Q Consensus 574 ~~i~~lp~----~i~~l~~L~~L~l~ 595 (798)
|.+...+. .+.++++|+.||..
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehh
Confidence 54443321 23444444444443
No 162
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.0027 Score=72.60 Aligned_cols=191 Identities=15% Similarity=0.118 Sum_probs=103.4
Q ss_pred cccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 131 NIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
+++|.+..++.|..++..+.. ..+.++|..|+||||+|+.+++... ....+... ...+..-...+.|......
T Consensus 17 ~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~--c~~~~~~~----~~~Cg~C~~C~~i~~g~h~ 90 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN--CLNSDKPT----PEPCGKCELCRAIAAGNAL 90 (620)
T ss_pred hccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc--CCCcCCCC----CCCCcccHHHHHHhcCCCc
Confidence 689999999999999987654 6788999999999999999988762 11111000 0111112222222221111
Q ss_pred CCCCCc-cccCCHHHHHHHHHHHh-----cCCcEEEEEecccCcc--ccccc----CCCCCCCcEEEE-eCCchHHhhhc
Q 003753 210 DPDGDK-WKNRDDQGRAAEIFRRL-----SNKKFALLLDDLRERI--ELSEA----GVPVQNASKIVF-TTIFEEVCSSM 276 (798)
Q Consensus 210 ~~~~~~-~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~--~~~~~----~~p~~~gs~iiv-TTR~~~v~~~~ 276 (798)
...... ......+...+ +.+.+ .+++-++|+|+++... ....+ --| ...+.+|+ |+....+...+
T Consensus 91 D~~ei~~~~~~~vd~IRe-ii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEeP-p~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 91 DVIEIDAASNTGVDNIRE-LIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEP-PPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred cEEEEeccccCCHHHHHH-HHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcC-CcCeEEEEEeCChhhhhHHH
Confidence 000000 01112222222 22222 2455688999988653 12221 111 23344444 54433332221
Q ss_pred -CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003753 277 -SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTI 332 (798)
Q Consensus 277 -~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 332 (798)
.....+++..++.++....+.+.+........ .+.+..|++.++|.+..+...
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 23356788899999888888776654332222 245788999999987544433
No 163
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.56 E-value=0.0019 Score=72.76 Aligned_cols=167 Identities=14% Similarity=0.161 Sum_probs=93.0
Q ss_pred cccchhHHHHHHHHHhh---c---------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHH
Q 003753 131 NIVGIESRLSEVWRYIE---D---------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEK 198 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 198 (798)
+++|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++.. .-. ++.++. .+
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~-----~~~i~~----~~ 123 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVP-----FFSISG----SD 123 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCC-----eeeccH----HH
Confidence 68898887776665442 1 223458899999999999999998875 222 222221 11
Q ss_pred HHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc------------c----ccc-----CCCC
Q 003753 199 IQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE------------L----SEA-----GVPV 257 (798)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~------------~----~~~-----~~p~ 257 (798)
+.. .. .......+...+.......+.+|++||++.... . ..+ ++..
T Consensus 124 ~~~----~~---------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 124 FVE----MF---------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred HHH----HH---------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 111 11 011122233333344445778999999865310 0 001 0112
Q ss_pred CCCcEEEEeCCchHH-----hhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc
Q 003753 258 QNASKIVFTTIFEEV-----CSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP 326 (798)
Q Consensus 258 ~~gs~iivTTR~~~v-----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 326 (798)
..+..||.||..... .+...-...+.++..+.++-.++|+.++......... ....+++.+.|.-
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~----~l~~la~~t~G~s 260 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDV----DLKAVARRTPGFS 260 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcch----hHHHHHHhCCCCC
Confidence 334456667765432 1111234568888888888889998877543322112 2447777777744
No 164
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.56 E-value=0.00062 Score=81.23 Aligned_cols=152 Identities=14% Similarity=0.198 Sum_probs=89.0
Q ss_pred CcccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCC----CCeE-EEEEcCCccCHHHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHK----FGAV-IMVKASTELNIEKIQDVIR 204 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~-~wv~vs~~~~~~~~~~~i~ 204 (798)
..++||+.+++++++.|......-+.++|.+|+|||++|+.+...... ... .+.. +++.++. +..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~vp~~l~~~~~~~l~l~~------l~a--- 247 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN-GEVPEGLKGRRVLALDMGA------LVA--- 247 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc-CCCchhhCCCEEEEEehhh------hhh---
Confidence 368999999999999997766667779999999999999999887621 110 1222 2332221 110
Q ss_pred HHcCCCCCCCccccCCHHHHHHHHHHHh--cCCcEEEEEecccCcc---------cccccCCC--CCCCcEEEEeCCchH
Q 003753 205 SRLGIDPDGDKWKNRDDQGRAAEIFRRL--SNKKFALLLDDLRERI---------ELSEAGVP--VQNASKIVFTTIFEE 271 (798)
Q Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l--~~~r~LlVlDdv~~~~---------~~~~~~~p--~~~gs~iivTTR~~~ 271 (798)
+.. ...+.++....+.+.+ .+++.+|++|++.... +...+..| ....-++|-+|..++
T Consensus 248 ---g~~------~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e 318 (857)
T PRK10865 248 ---GAK------YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDE 318 (857)
T ss_pred ---ccc------hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHH
Confidence 000 1122333333333332 2478999999987542 22334455 333446666555544
Q ss_pred Hhhh-------cCCCcceeccCCChHHHHHHHHHhc
Q 003753 272 VCSS-------MSVDWRFKVDYLPQEEAWNLFRLKV 300 (798)
Q Consensus 272 v~~~-------~~~~~~~~l~~L~~~~a~~Lf~~~~ 300 (798)
.... ..-.+.+.+..-+.++...+++...
T Consensus 319 ~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 319 YRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 3111 1112356677778888888886554
No 165
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.0011 Score=70.39 Aligned_cols=136 Identities=18% Similarity=0.203 Sum_probs=87.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCC-eEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFG-AVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF 229 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 229 (798)
...+.|+|..|.|||.|++++.+... ....+ .+++++ .+.....++..+.. ......+
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~--~~~~~a~v~y~~------se~f~~~~v~a~~~-------------~~~~~Fk 171 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEAL--ANGPNARVVYLT------SEDFTNDFVKALRD-------------NEMEKFK 171 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH--hhCCCceEEecc------HHHHHHHHHHHHHh-------------hhHHHHH
Confidence 67999999999999999999999883 23333 344442 23333333333211 2233445
Q ss_pred HHhcCCcEEEEEecccCcc---cccccCCC-----CCCCcEEEEeCCch---------HHhhhcCCCcceeccCCChHHH
Q 003753 230 RRLSNKKFALLLDDLRERI---ELSEAGVP-----VQNASKIVFTTIFE---------EVCSSMSVDWRFKVDYLPQEEA 292 (798)
Q Consensus 230 ~~l~~~r~LlVlDdv~~~~---~~~~~~~p-----~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~a 292 (798)
+.. .-=++++||++... .++...+- ...|..||+|++.. .+...+...-++++++.+.+..
T Consensus 172 ~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 172 EKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETR 249 (408)
T ss_pred Hhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHH
Confidence 555 44488999987642 22222111 34455999999642 3445566667899999999999
Q ss_pred HHHHHHhccCcccCCCh
Q 003753 293 WNLFRLKVTDEVLNSHP 309 (798)
Q Consensus 293 ~~Lf~~~~~~~~~~~~~ 309 (798)
...+.+++.......++
T Consensus 250 ~aiL~kka~~~~~~i~~ 266 (408)
T COG0593 250 LAILRKKAEDRGIEIPD 266 (408)
T ss_pred HHHHHHHHHhcCCCCCH
Confidence 99999987665544443
No 166
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.54 E-value=0.0007 Score=74.78 Aligned_cols=154 Identities=15% Similarity=0.285 Sum_probs=88.1
Q ss_pred cccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHhhhh--cCCCCeEEEEEcCCccC
Q 003753 131 NIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDM--SHKFGAVIMVKASTELN 195 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~~~~wv~vs~~~~ 195 (798)
++.|.+..++++.+.+.. ...+-+.++|++|+|||++|+.+++..... ........|+.++..
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~-- 260 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP-- 260 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch--
Confidence 577899999998887631 234568999999999999999999987210 001223444444332
Q ss_pred HHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHh-----cCCcEEEEEecccCcc---------ccc-----cc--C
Q 003753 196 IEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRL-----SNKKFALLLDDLRERI---------ELS-----EA--G 254 (798)
Q Consensus 196 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~---------~~~-----~~--~ 254 (798)
+ ++... .. ..+.....+.+.. .+++++|+||+++... +.. .+ .
T Consensus 261 --e----Ll~ky---------vG-ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 261 --E----LLNKY---------VG-ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred --h----hcccc---------cc-hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 1 11100 01 1111222222221 3478999999997531 110 11 0
Q ss_pred CC---CCCCcEEEEeCCchHHhh-----hcCCCcceeccCCChHHHHHHHHHhccC
Q 003753 255 VP---VQNASKIVFTTIFEEVCS-----SMSVDWRFKVDYLPQEEAWNLFRLKVTD 302 (798)
Q Consensus 255 ~p---~~~gs~iivTTR~~~v~~-----~~~~~~~~~l~~L~~~~a~~Lf~~~~~~ 302 (798)
+. ...+..||.||...+... ...-...|+++..+.++..++|+.++..
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 11 223445566665444311 1123456899999999999999988753
No 167
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.53 E-value=0.0008 Score=80.67 Aligned_cols=153 Identities=13% Similarity=0.197 Sum_probs=90.2
Q ss_pred CcccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCC----CCeEEEEEcCCccCHHHHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHK----FGAVIMVKASTELNIEKIQDVIRS 205 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~vs~~~~~~~~~~~i~~ 205 (798)
..++||+.+++++++.|......-+.++|.+|+|||++|..++.+... ... .+..+|.- +...+. .
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~~p~~l~~~~~~~l-----~~~~l~----a 242 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN-GDVPESLKNKRLLAL-----DMGALI----A 242 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc-cCCchhhcCCeEEEe-----eHHHHh----h
Confidence 368999999999999997766666778999999999999999887621 111 12333321 111111 0
Q ss_pred HcCCCCCCCccccCCHHHHHHHHHHHhc--CCcEEEEEecccCcc---------cccccCCC--CCCCcEEEEeCCchHH
Q 003753 206 RLGIDPDGDKWKNRDDQGRAAEIFRRLS--NKKFALLLDDLRERI---------ELSEAGVP--VQNASKIVFTTIFEEV 272 (798)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~---------~~~~~~~p--~~~gs~iivTTR~~~v 272 (798)
+.. ...+.+.....+.+.+. +++.+|++|++.... +...+..| ....-++|.+|..++.
T Consensus 243 --~~~------~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 243 --GAK------YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEY 314 (852)
T ss_pred --cch------hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHH
Confidence 101 11223334444444442 468999999987542 12233445 2233455555554443
Q ss_pred hhh-------cCCCcceeccCCChHHHHHHHHHhc
Q 003753 273 CSS-------MSVDWRFKVDYLPQEEAWNLFRLKV 300 (798)
Q Consensus 273 ~~~-------~~~~~~~~l~~L~~~~a~~Lf~~~~ 300 (798)
-.. ..-.+.+.++..+.++...++....
T Consensus 315 r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 315 RKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 111 1122467889899999999887653
No 168
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.53 E-value=8.5e-05 Score=69.26 Aligned_cols=103 Identities=22% Similarity=0.293 Sum_probs=69.5
Q ss_pred CcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccccccc-CCCCCCEEEcCCCCCcccC--ccccCCCcccEE
Q 003753 516 PRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEG-ELIDLQYLNLSNTNICELP--IGIKSCTHLRTL 592 (798)
Q Consensus 516 ~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~-~L~~L~~L~Ls~~~i~~lp--~~i~~l~~L~~L 592 (798)
.+...++|++|.+..++. |..++.|..|.|++| .|+.+-..+. -+++|..|.|.+|+|.++- ..+..+++|++|
T Consensus 42 d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 356677788887776665 677788888888888 7877744444 3566888888888776652 245667778888
Q ss_pred eCCCCCCccccc---chhhcCCCCCccccccCC
Q 003753 593 LLDGTENLKAIP---VGMLSSLLSLRVFSWVPT 622 (798)
Q Consensus 593 ~l~~~~~l~~lp---~~~i~~L~~L~~L~l~~~ 622 (798)
.+-+|. ..... .-++..+++|++|++.+.
T Consensus 119 tll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 777775 43332 224667777777777653
No 169
>PRK08116 hypothetical protein; Validated
Probab=97.51 E-value=0.00026 Score=72.43 Aligned_cols=98 Identities=27% Similarity=0.333 Sum_probs=58.4
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRR 231 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 231 (798)
..+.++|..|+|||.||..+++... .....+++++ ..+++..|........ ..+.. .+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~~------~~~~~----~~~~~ 175 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSSG------KEDEN----EIIRS 175 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhccc------cccHH----HHHHH
Confidence 4589999999999999999999983 2234456664 4455666655443211 11222 23344
Q ss_pred hcCCcEEEEEecccCc--cccccc-CCC-----CCCCcEEEEeCCc
Q 003753 232 LSNKKFALLLDDLRER--IELSEA-GVP-----VQNASKIVFTTIF 269 (798)
Q Consensus 232 l~~~r~LlVlDdv~~~--~~~~~~-~~p-----~~~gs~iivTTR~ 269 (798)
+.+-. ||||||+... .+|..- .+. -..|..+||||..
T Consensus 176 l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 176 LVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred hcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 44433 8999999532 233221 111 2456779999964
No 170
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.50 E-value=0.0035 Score=70.88 Aligned_cols=189 Identities=15% Similarity=0.164 Sum_probs=102.2
Q ss_pred CcccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcC
Q 003753 130 NNIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 208 (798)
.+++|-+..++.+..++..+.. +.+.++|+.|+||||+|+.+++...- ...... ..+....+- +.|...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c-~~~~~~---~pC~~C~~C----~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNC-VNGPTP---MPCGECSSC----KSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcc-ccCCCC---CCCccchHH----HHHHcCCC
Confidence 3699999999999999987654 46889999999999999999887621 110000 000000011 11111000
Q ss_pred CC---CCCCccccCCHHHHHHHH---HH-HhcCCcEEEEEecccCcc--cccccC--CC-CCCCcEEEEeC-CchHHhhh
Q 003753 209 ID---PDGDKWKNRDDQGRAAEI---FR-RLSNKKFALLLDDLRERI--ELSEAG--VP-VQNASKIVFTT-IFEEVCSS 275 (798)
Q Consensus 209 ~~---~~~~~~~~~~~~~~~~~l---~~-~l~~~r~LlVlDdv~~~~--~~~~~~--~p-~~~gs~iivTT-R~~~v~~~ 275 (798)
.. .++. .....++..... .. -..+++-++|+|++.... .+..+. +. ....+.+|++| ....+...
T Consensus 88 ~dv~~idga--s~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 88 LDVIEIDGA--SNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCeEEecCc--ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHH
Confidence 00 0000 011122222211 11 123566689999987653 122221 11 23455555555 33333322
Q ss_pred c-CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHH
Q 003753 276 M-SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVT 331 (798)
Q Consensus 276 ~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 331 (798)
. .....+++.+++.++....+.+.+.......+ .+.+..|++.++|.+-.+..
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id---~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE---DEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 1 22346889999999988888877644332222 34677788999997754433
No 171
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.0017 Score=74.05 Aligned_cols=192 Identities=18% Similarity=0.166 Sum_probs=102.0
Q ss_pred CcccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcC
Q 003753 130 NNIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 208 (798)
.+++|.+..++.|.+++..+.+ +.+.++|+.|+||||+|+.+++...- .+..+. ..+..-..-..|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c-~~~~~~-------~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC-EQGLTA-------EPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC-CCCCCC-------CCCCccHHHHHHhcCCC
Confidence 3699999999999999987765 46689999999999999998877521 011000 00000011111111000
Q ss_pred CCCCCCc-cccCCHHHHHHHHHHHh-----cCCcEEEEEecccCccc-----cccc-CCCCCCCcEEE-EeCCchHHhhh
Q 003753 209 IDPDGDK-WKNRDDQGRAAEIFRRL-----SNKKFALLLDDLRERIE-----LSEA-GVPVQNASKIV-FTTIFEEVCSS 275 (798)
Q Consensus 209 ~~~~~~~-~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~~-----~~~~-~~p~~~gs~ii-vTTR~~~v~~~ 275 (798)
...-..+ ......++ ++.+.+.+ .+++-++|+|+++.... +.+. --| ...+.+| +||....+...
T Consensus 88 ~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep-p~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 88 VDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP-PPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC-CCCeEEEEEeCChhhhhHH
Confidence 0000000 00011111 12222222 24556889999875431 1111 112 2345555 55555555432
Q ss_pred c-CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc-hHHHHHHH
Q 003753 276 M-SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP-LALVTIGS 334 (798)
Q Consensus 276 ~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~g~ 334 (798)
. .....+++.+++.++....+...+.......+ .+....|++.++|.. .|+..+-.
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2 23457889999999988888776644332222 345777888888865 45554433
No 172
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.47 E-value=0.0068 Score=59.54 Aligned_cols=46 Identities=28% Similarity=0.514 Sum_probs=37.9
Q ss_pred cccchhHHHHHHHHHh----hcCCceEEEEEecCCchHHHHHHHHHHHhh
Q 003753 131 NIVGIESRLSEVWRYI----EDDGVKIIGLYGVRGVGKSTLLKQLNDTFS 176 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (798)
.++|.|..++.|++-. ......-+.+||..|+|||++++++.+.+.
T Consensus 28 ~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~ 77 (249)
T PF05673_consen 28 DLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYA 77 (249)
T ss_pred HhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHh
Confidence 7999999998887633 334556788899999999999999999884
No 173
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.43 E-value=0.0061 Score=69.25 Aligned_cols=187 Identities=16% Similarity=0.118 Sum_probs=99.7
Q ss_pred CcccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcC
Q 003753 130 NNIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 208 (798)
.+++|.+..++.+.+++..+.. +.+.++|+.|+||||+|+.+.+.... ...-+ ...++.-..-+.|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c-~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNC-LNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC-CCCCC-------CCCCCccHHHHHHhcCCC
Confidence 3799999999999999977654 56778999999999999998776521 11000 001111111112211100
Q ss_pred CCCCCCc-cccCCHHHHHHHHHHH-----hcCCcEEEEEecccCcc--ccccc----CCCCCCCcEEE-EeCCchHHhhh
Q 003753 209 IDPDGDK-WKNRDDQGRAAEIFRR-----LSNKKFALLLDDLRERI--ELSEA----GVPVQNASKIV-FTTIFEEVCSS 275 (798)
Q Consensus 209 ~~~~~~~-~~~~~~~~~~~~l~~~-----l~~~r~LlVlDdv~~~~--~~~~~----~~p~~~gs~ii-vTTR~~~v~~~ 275 (798)
.+...-+ ......++ +..+.+. ..+++-++|+|++.... .+..+ .-| .....+| .||....+...
T Consensus 88 ~dv~eidaas~~~vd~-ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep-p~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 88 MDVIEIDAASNNGVDE-IRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP-PAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCeEEeeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC-CCCeEEEEEeCChhhCcHH
Confidence 0000000 00111121 1222222 23466688999987542 11111 112 2334444 45544443222
Q ss_pred -cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHH
Q 003753 276 -MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLAL 329 (798)
Q Consensus 276 -~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 329 (798)
......+++.+++.++....+...+.......+ .+.+..|++.++|.+..+
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 122356788999999988888877654332222 345777888888876533
No 174
>PRK08118 topology modulation protein; Reviewed
Probab=97.42 E-value=8.4e-05 Score=70.25 Aligned_cols=36 Identities=39% Similarity=0.488 Sum_probs=29.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEE
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIM 187 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 187 (798)
+.|.|+|++|+||||||+.+++.....--+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987322356777776
No 175
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.40 E-value=0.0011 Score=66.18 Aligned_cols=178 Identities=13% Similarity=0.173 Sum_probs=106.1
Q ss_pred CcccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeE-EEEEcCCccCHHHHHHHHHHHcC
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAV-IMVKASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~-~wv~vs~~~~~~~~~~~i~~~l~ 208 (798)
.+++|.+..+.-|.+.+.....++...+|++|.|||+-|..++...-. .+.|.+. .-.++|......-+-..+
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~-~~~~~~rvl~lnaSderGisvvr~Ki----- 109 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC-EQLFPCRVLELNASDERGISVVREKI----- 109 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC-ccccccchhhhcccccccccchhhhh-----
Confidence 468899999999999998778899999999999999999988877622 3556554 334555543322111111
Q ss_pred CCCCCCccccCCHHHHHHHHHHHh--cCCc-EEEEEecccCcc--cccccCCC---CCCCcEEE-EeCCchHHhhhc-CC
Q 003753 209 IDPDGDKWKNRDDQGRAAEIFRRL--SNKK-FALLLDDLRERI--ELSEAGVP---VQNASKIV-FTTIFEEVCSSM-SV 278 (798)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~l~~~l--~~~r-~LlVlDdv~~~~--~~~~~~~p---~~~gs~ii-vTTR~~~v~~~~-~~ 278 (798)
.+.+.+........ ..++ -.+|||+++... .|..+.-- ....++.| ||+--..+..-. .-
T Consensus 110 ----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SR 179 (346)
T KOG0989|consen 110 ----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSR 179 (346)
T ss_pred ----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhh
Confidence 11111111110000 1134 478899988652 33333111 23445544 444333222111 12
Q ss_pred CcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc
Q 003753 279 DWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP 326 (798)
Q Consensus 279 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 326 (798)
...|..++|.+++...-++..+..+....+ .+..+.|++.++|--
T Consensus 180 C~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 180 CQKFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDL 224 (346)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcH
Confidence 246889999999999999888876654443 345777888887743
No 176
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0035 Score=66.88 Aligned_cols=142 Identities=19% Similarity=0.226 Sum_probs=89.6
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 228 (798)
.....+.+.|++|+|||+||..++.. ..|..+--++..+ ....++......+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe~-----------------------miG~sEsaKc~~i 587 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPED-----------------------MIGLSESAKCAHI 587 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChHH-----------------------ccCccHHHHHHHH
Confidence 34667889999999999999998764 4566554332111 1223333444444
Q ss_pred HH----HhcCCcEEEEEecccCcccccccCCC----------------CCCCcEE--EEeCCchHHhhhcCC----Ccce
Q 003753 229 FR----RLSNKKFALLLDDLRERIELSEAGVP----------------VQNASKI--VFTTIFEEVCSSMSV----DWRF 282 (798)
Q Consensus 229 ~~----~l~~~r~LlVlDdv~~~~~~~~~~~p----------------~~~gs~i--ivTTR~~~v~~~~~~----~~~~ 282 (798)
.+ ..+..--.||+||+....+|..++.. ..+|-|. +-||....+...|+. ...|
T Consensus 588 ~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i 667 (744)
T KOG0741|consen 588 KKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTI 667 (744)
T ss_pred HHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhhee
Confidence 44 34556679999999887776665421 2344454 447777888887763 3468
Q ss_pred eccCCCh-HHHHHHHHHhccCcccCCChhHHHHHHHHHHHh
Q 003753 283 KVDYLPQ-EEAWNLFRLKVTDEVLNSHPEIRELAETVANMC 322 (798)
Q Consensus 283 ~l~~L~~-~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c 322 (798)
.++.++. ++..+.++..-- -.+.+.+.++++...+|
T Consensus 668 ~Vpnl~~~~~~~~vl~~~n~----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 668 HVPNLTTGEQLLEVLEELNI----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred ecCccCchHHHHHHHHHccC----CCcchhHHHHHHHhccc
Confidence 8999987 677777765421 12344555667776666
No 177
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.37 E-value=0.0003 Score=69.49 Aligned_cols=36 Identities=31% Similarity=0.500 Sum_probs=31.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEc
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKA 190 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 190 (798)
-.++|+|..|+|||||+..+.... .+.|+++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 468899999999999999998876 678888888754
No 178
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.33 E-value=0.011 Score=70.49 Aligned_cols=46 Identities=24% Similarity=0.382 Sum_probs=38.5
Q ss_pred CcccchhHHHHHHHHHhhc------CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 130 NNIVGIESRLSEVWRYIED------DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.+++|.+..+++|.+++.. ...+++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3588999999999987732 234589999999999999999999887
No 179
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.32 E-value=0.0007 Score=62.00 Aligned_cols=88 Identities=20% Similarity=0.195 Sum_probs=51.3
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRR 231 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 231 (798)
..+.|+|++|+||||+|+.++.... .....++++..+........... ........ ...........+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~ 73 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG---PPGGGVIYIDGEDILEEVLDQLL-LIIVGGKK-----ASGSGELRLRLALAL 73 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC---CCCCCEEEECCEEccccCHHHHH-hhhhhccC-----CCCCHHHHHHHHHHH
Confidence 5789999999999999999988872 22234666665544332222211 01111111 222333344445555
Q ss_pred hcCC-cEEEEEecccCcc
Q 003753 232 LSNK-KFALLLDDLRERI 248 (798)
Q Consensus 232 l~~~-r~LlVlDdv~~~~ 248 (798)
.+.. ..++++|+++...
T Consensus 74 ~~~~~~~viiiDei~~~~ 91 (148)
T smart00382 74 ARKLKPDVLILDEITSLL 91 (148)
T ss_pred HHhcCCCEEEEECCcccC
Confidence 5444 4999999998764
No 180
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.30 E-value=0.011 Score=69.71 Aligned_cols=154 Identities=16% Similarity=0.138 Sum_probs=85.2
Q ss_pred CcccchhHHHHHHHHHhhc------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIED------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVI 203 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 203 (798)
.+.+|.+..+++|+++|.. ....++.++|++|+||||+|+.++... ...|-. +..+...+..++...-
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~~---i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYVR---MALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEE---EEcCCCCCHHHhccch
Confidence 4689999999999998842 245689999999999999999999876 233322 3333333333222111
Q ss_pred HHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc---------ccccC--------------CC-CCC
Q 003753 204 RSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE---------LSEAG--------------VP-VQN 259 (798)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~---------~~~~~--------------~p-~~~ 259 (798)
... ...........+.+.- ...-+++||.++.... +..+. .| .-.
T Consensus 396 ~~~----------~g~~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls 464 (784)
T PRK10787 396 RTY----------IGSMPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLS 464 (784)
T ss_pred hcc----------CCCCCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCC
Confidence 000 1111222333333222 2334788999864321 11111 11 113
Q ss_pred CcEEEEeCCchHHhhh-cCCCcceeccCCChHHHHHHHHHhc
Q 003753 260 ASKIVFTTIFEEVCSS-MSVDWRFKVDYLPQEEAWNLFRLKV 300 (798)
Q Consensus 260 gs~iivTTR~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~ 300 (798)
+.-+|.|+....+... .+-..++.+.+++++|-.++.+++.
T Consensus 465 ~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 465 DVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred ceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 3344455544332111 1222468889999988888887765
No 181
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.29 E-value=8.1e-05 Score=72.32 Aligned_cols=87 Identities=26% Similarity=0.235 Sum_probs=49.5
Q ss_pred CCcceeeeecccccc-----cccHHHHhcCCceeEEeCCCCcccc----cccc-------cccCCCCCCEEEcCCCCCc-
Q 003753 515 SPRLLTLLVRYTMIK-----EFENKFFKSMYALRVLDSSQNAKLS----KLHV-------GEGELIDLQYLNLSNTNIC- 577 (798)
Q Consensus 515 ~~~L~~L~l~~~~~~-----~l~~~~~~~l~~Lr~L~L~~~~~i~----~lp~-------~i~~L~~L~~L~Ls~~~i~- 577 (798)
+..+..++|++|.+. .+... +.+-++|++.+++.- ... .+|+ .+-+|++|+..+||.|-+.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~-ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNV-IANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHH-HhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 556777788887554 22222 556677777777754 221 2232 2346677777777777442
Q ss_pred ccCc----cccCCCcccEEeCCCCCCccccc
Q 003753 578 ELPI----GIKSCTHLRTLLLDGTENLKAIP 604 (798)
Q Consensus 578 ~lp~----~i~~l~~L~~L~l~~~~~l~~lp 604 (798)
..|. -+++-+.|.||.+++|. +..+.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnG-lGp~a 136 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNG-LGPIA 136 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCC-CCccc
Confidence 2232 34555667777777665 44443
No 182
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0019 Score=71.78 Aligned_cols=154 Identities=17% Similarity=0.217 Sum_probs=93.1
Q ss_pred CcccchhHHHHHHHHHhh------cCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIE------DDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVI 203 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 203 (798)
.+.+|.++-+++|+++|. +-.-++++++|++|+|||.|++.+++.. ...| +-+.++.-.|..++-.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf---vR~sLGGvrDEAEIRG-- 394 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF---VRISLGGVRDEAEIRG-- 394 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE---EEEecCccccHHHhcc--
Confidence 468899999999999992 1234799999999999999999999987 3333 3334444444444321
Q ss_pred HHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc---------cccccCCC-C------------CCCc
Q 003753 204 RSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI---------ELSEAGVP-V------------QNAS 261 (798)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~---------~~~~~~~p-~------------~~gs 261 (798)
+...+-..-+...++.+.+ .+.+.=+++||.++... .+.++.-| . -.=|
T Consensus 395 --------HRRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 395 --------HRRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred --------ccccccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchh
Confidence 1111222223333333333 24467789999987541 22233333 1 1123
Q ss_pred EEE-EeCCc-hH-H-hhhcCCCcceeccCCChHHHHHHHHHhc
Q 003753 262 KIV-FTTIF-EE-V-CSSMSVDWRFKVDYLPQEEAWNLFRLKV 300 (798)
Q Consensus 262 ~ii-vTTR~-~~-v-~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 300 (798)
.|+ |||-| -+ + +..+.-..+|++.+.+++|-.++-++++
T Consensus 466 ~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred heEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 443 44433 22 2 1223344689999999999988888775
No 183
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0054 Score=62.74 Aligned_cols=192 Identities=20% Similarity=0.325 Sum_probs=112.7
Q ss_pred ccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHH
Q 003753 132 IVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEK 198 (798)
Q Consensus 132 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 198 (798)
+=|-++.+++|.+..+- +.++=|.++|++|.|||-||++|+++- ... |+.|... +-
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~At-----FIrvvgS---El 221 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DAT-----FIRVVGS---EL 221 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---Cce-----EEEeccH---HH
Confidence 44889999999887732 456789999999999999999999986 222 3333222 11
Q ss_pred HHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhc-CCcEEEEEecccCcc-------------------ccc-cc-CCC
Q 003753 199 IQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLS-NKKFALLLDDLRERI-------------------ELS-EA-GVP 256 (798)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~r~LlVlDdv~~~~-------------------~~~-~~-~~p 256 (798)
+++-| | +-..+++.+.+.-+ +.+..|.+|.++..- ++. +. ++.
T Consensus 222 VqKYi----G-----------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 222 VQKYI----G-----------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred HHHHh----c-----------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 22212 1 11234444554444 468899999987531 111 11 333
Q ss_pred CCCCcEEEEeCCchHHh-----hhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc----h
Q 003753 257 VQNASKIVFTTIFEEVC-----SSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP----L 327 (798)
Q Consensus 257 ~~~gs~iivTTR~~~v~-----~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP----L 327 (798)
...+-|||..|...++. +--.-+..++++.-+.+.-.++|+-++..-.....-++ +.+++.|.|.- -
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAdlk 362 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGADLK 362 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchHHHH
Confidence 55677999888765552 22224456788755556666788777765443333443 45666666654 4
Q ss_pred HHHHHHHHhcCC--C---ChhHHHHHHHHHh
Q 003753 328 ALVTIGSAMASR--R---DPDNWRYAIEELQ 353 (798)
Q Consensus 328 ai~~~g~~l~~~--~---~~~~w~~~~~~l~ 353 (798)
|+.+=|++++-+ + +.+.+..+.++..
T Consensus 363 aictEAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 363 AICTEAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHHHHhHHHHHhccCeecHHHHHHHHHHHH
Confidence 555556665432 2 3445555555443
No 184
>PRK12377 putative replication protein; Provisional
Probab=97.26 E-value=0.001 Score=66.70 Aligned_cols=75 Identities=20% Similarity=0.294 Sum_probs=46.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF 229 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 229 (798)
+...+.++|..|+|||+||..+++... .....++++++ .++...|-..... ..... .+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~------~~l~~~l~~~~~~--------~~~~~----~~l 158 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTV------PDVMSRLHESYDN--------GQSGE----KFL 158 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEH------HHHHHHHHHHHhc--------cchHH----HHH
Confidence 346899999999999999999999883 23344566654 3455555443311 11111 222
Q ss_pred HHhcCCcEEEEEecccC
Q 003753 230 RRLSNKKFALLLDDLRE 246 (798)
Q Consensus 230 ~~l~~~r~LlVlDdv~~ 246 (798)
+.+ .+.=||||||+..
T Consensus 159 ~~l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 159 QEL-CKVDLLVLDEIGI 174 (248)
T ss_pred HHh-cCCCEEEEcCCCC
Confidence 223 3566999999943
No 185
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.01 Score=65.94 Aligned_cols=101 Identities=15% Similarity=0.254 Sum_probs=67.4
Q ss_pred CcccchhHHHHHHHHHhh------cCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIE------DDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVI 203 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 203 (798)
.+.+|.++-+++|++++. +-+-++++.+|++|+|||.+|+.++.-.. +++| -++|+.-.|+.+|-..=
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkFf----RfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKFF----RFSVGGMTDVAEIKGHR 484 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--CceE----EEeccccccHHhhcccc
Confidence 478999999999999983 23458999999999999999999998873 3333 34566666665553211
Q ss_pred HHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCc
Q 003753 204 RSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRER 247 (798)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~ 247 (798)
..+...-+...++.+++ .+...=|+.+|.|+..
T Consensus 485 ----------RTYVGAMPGkiIq~LK~-v~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 485 ----------RTYVGAMPGKIIQCLKK-VKTENPLILIDEVDKL 517 (906)
T ss_pred ----------eeeeccCChHHHHHHHh-hCCCCceEEeehhhhh
Confidence 11222223344443333 3446678889998754
No 186
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.0073 Score=63.61 Aligned_cols=91 Identities=11% Similarity=0.172 Sum_probs=55.2
Q ss_pred CCcEEEEEecccCcc-----ccccc-CCCCCCCcEEEEeCCch-HHhhh-cCCCcceeccCCChHHHHHHHHHhccCccc
Q 003753 234 NKKFALLLDDLRERI-----ELSEA-GVPVQNASKIVFTTIFE-EVCSS-MSVDWRFKVDYLPQEEAWNLFRLKVTDEVL 305 (798)
Q Consensus 234 ~~r~LlVlDdv~~~~-----~~~~~-~~p~~~gs~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~ 305 (798)
+++-++|+|+++... .+.+. .-| ..++.+|+||.+. .+... ..-...+.+.+++.+++.+.+.+.....
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEP-p~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEP-SGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCC-CCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC--
Confidence 344455779998653 12221 223 3456666666654 33322 2234578999999999999887764211
Q ss_pred CCChhHHHHHHHHHHHhCCCchHHHHH
Q 003753 306 NSHPEIRELAETVANMCGGLPLALVTI 332 (798)
Q Consensus 306 ~~~~~~~~~~~~i~~~c~glPLai~~~ 332 (798)
. .+.+..++..++|.|..+..+
T Consensus 182 --~---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 --D---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --C---hHHHHHHHHHcCCCHHHHHHH
Confidence 1 233567789999999765544
No 187
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.24 E-value=0.0024 Score=67.09 Aligned_cols=106 Identities=13% Similarity=0.132 Sum_probs=66.9
Q ss_pred HHHHHHhhc-CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCe-EEEEEcCCc-cCHHHHHHHHHHHcCCCCCCCc-
Q 003753 140 SEVWRYIED-DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGA-VIMVKASTE-LNIEKIQDVIRSRLGIDPDGDK- 215 (798)
Q Consensus 140 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~- 215 (798)
.++++.+.. +.-..+.|+|..|+|||||++.+++... .++-+. ++|+.+.+. ..+.++.+.+...+.....+..
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 346666643 3445779999999999999999988773 334455 467676654 4688999999887765431100
Q ss_pred cccCCHHHHHHHHHHHh--cCCcEEEEEecccCc
Q 003753 216 WKNRDDQGRAAEIFRRL--SNKKFALLLDDLRER 247 (798)
Q Consensus 216 ~~~~~~~~~~~~l~~~l--~~~r~LlVlDdv~~~ 247 (798)
.........+..+.+++ .+++++||+|++...
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 00011111222222333 479999999998644
No 188
>PRK10536 hypothetical protein; Provisional
Probab=97.23 E-value=0.0041 Score=61.81 Aligned_cols=133 Identities=12% Similarity=0.139 Sum_probs=75.6
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEc----CCc--c---CHHH---
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKA----STE--L---NIEK--- 198 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v----s~~--~---~~~~--- 198 (798)
.+.++......++.++.+. .++.+.|..|+|||+||..+..+.- ..+.|+.++-..- ++. | +.++
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l-~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~ 132 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEAL-IHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFA 132 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHH-hcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHH
Confidence 4668889999999988764 4999999999999999999888641 1344555544321 110 0 1111
Q ss_pred -HHHHHHHHcCCCCCCCccccCCHHHHHH--------HHHHHhcCCcE---EEEEecccCcc--cccccCCCCCCCcEEE
Q 003753 199 -IQDVIRSRLGIDPDGDKWKNRDDQGRAA--------EIFRRLSNKKF---ALLLDDLRERI--ELSEAGVPVQNASKIV 264 (798)
Q Consensus 199 -~~~~i~~~l~~~~~~~~~~~~~~~~~~~--------~l~~~l~~~r~---LlVlDdv~~~~--~~~~~~~p~~~gs~ii 264 (798)
.+.-|...+..-. .....+.... .-..+++++.+ ++|+|++.+.. +...+.-..+.+|++|
T Consensus 133 p~~~pi~D~L~~~~-----~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v 207 (262)
T PRK10536 133 PYFRPVYDVLVRRL-----GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVI 207 (262)
T ss_pred HHHHHHHHHHHHHh-----ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCEEE
Confidence 1222222221100 0000111100 01235677655 99999998764 3333333357899999
Q ss_pred EeCCchH
Q 003753 265 FTTIFEE 271 (798)
Q Consensus 265 vTTR~~~ 271 (798)
+|--..+
T Consensus 208 ~~GD~~Q 214 (262)
T PRK10536 208 VNGDITQ 214 (262)
T ss_pred EeCChhh
Confidence 9886543
No 189
>CHL00176 ftsH cell division protein; Validated
Probab=97.23 E-value=0.0049 Score=70.65 Aligned_cols=166 Identities=16% Similarity=0.182 Sum_probs=94.8
Q ss_pred cccchhHHHHHHHHHh---hcC---------CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHH
Q 003753 131 NIVGIESRLSEVWRYI---EDD---------GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEK 198 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 198 (798)
+++|.++.++++.+.+ ... ..+-+.++|++|+|||+||+.+++.. ... |+.++.. +
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~s----~ 251 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISGS----E 251 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccHH----H
Confidence 6889887777665544 221 23568999999999999999998875 222 2222211 1
Q ss_pred HHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc------------c----cccc-----CCCC
Q 003753 199 IQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI------------E----LSEA-----GVPV 257 (798)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~------------~----~~~~-----~~p~ 257 (798)
+. ... ...........+.......+.+|++||++... . +..+ ++..
T Consensus 252 f~----~~~---------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 252 FV----EMF---------VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred HH----HHh---------hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 11 000 00111223333444556688999999996431 0 1111 1113
Q ss_pred CCCcEEEEeCCchHHhhh-----cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCC
Q 003753 258 QNASKIVFTTIFEEVCSS-----MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGL 325 (798)
Q Consensus 258 ~~gs~iivTTR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 325 (798)
..+..||.||...+.... ..-...+.++..+.++-.++++.++....... ......+++.+.|.
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~----d~~l~~lA~~t~G~ 387 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP----DVSLELIARRTPGF 387 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch----hHHHHHHHhcCCCC
Confidence 345567777766443221 11335678888899999999988876532111 22356677777773
No 190
>PRK07261 topology modulation protein; Provisional
Probab=97.18 E-value=0.001 Score=63.17 Aligned_cols=67 Identities=25% Similarity=0.417 Sum_probs=43.2
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRL 232 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 232 (798)
.|.|+|++|+||||||+.+........-+.|...|-.. +...+.++....+...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-------------------------~~~~~~~~~~~~~~~~~ 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-------------------------WQERDDDDMIADISNFL 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-------------------------cccCCHHHHHHHHHHHH
Confidence 48999999999999999998765211123455555211 12334456666677777
Q ss_pred cCCcEEEEEecccC
Q 003753 233 SNKKFALLLDDLRE 246 (798)
Q Consensus 233 ~~~r~LlVlDdv~~ 246 (798)
.+.+ .|+|+...
T Consensus 57 ~~~~--wIidg~~~ 68 (171)
T PRK07261 57 LKHD--WIIDGNYS 68 (171)
T ss_pred hCCC--EEEcCcch
Confidence 7666 57787644
No 191
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.17 E-value=0.0014 Score=63.30 Aligned_cols=129 Identities=12% Similarity=0.072 Sum_probs=63.7
Q ss_pred chhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc--cC----HHH-------HH
Q 003753 134 GIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE--LN----IEK-------IQ 200 (798)
Q Consensus 134 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~----~~~-------~~ 200 (798)
.+..+-...++.|. ...++.+.|++|.|||.||...+-+. ...+.|+.++++.-.-+ .+ .-+ ..
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 34455566666666 45699999999999999999887766 33588999888752211 00 011 11
Q ss_pred HHHHHHcCCCCCCCccccCCHHHHHHH------HHHHhcCC---cEEEEEecccCcc--cccccCCCCCCCcEEEEeCCc
Q 003753 201 DVIRSRLGIDPDGDKWKNRDDQGRAAE------IFRRLSNK---KFALLLDDLRERI--ELSEAGVPVQNASKIVFTTIF 269 (798)
Q Consensus 201 ~~i~~~l~~~~~~~~~~~~~~~~~~~~------l~~~l~~~---r~LlVlDdv~~~~--~~~~~~~p~~~gs~iivTTR~ 269 (798)
.-+...+..-. .....+..... -..+++|+ ...+|+|++.+.. ++..+.-..+.|||+|++--.
T Consensus 81 ~p~~d~l~~~~-----~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 81 RPIYDALEELF-----GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHHHHHHTTTS------TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE--
T ss_pred HHHHHHHHHHh-----ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcccCCCcEEEEecCc
Confidence 11222221111 11112221110 01234553 5699999998763 555554446789999998754
Q ss_pred h
Q 003753 270 E 270 (798)
Q Consensus 270 ~ 270 (798)
.
T Consensus 156 ~ 156 (205)
T PF02562_consen 156 S 156 (205)
T ss_dssp -
T ss_pred e
Confidence 4
No 192
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.017 Score=60.61 Aligned_cols=192 Identities=15% Similarity=0.130 Sum_probs=106.5
Q ss_pred cccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhh------------cCCCCeEEEEEcCCccCHH
Q 003753 131 NIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDM------------SHKFGAVIMVKASTELNIE 197 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------------~~~f~~~~wv~vs~~~~~~ 197 (798)
+++|.+..++.+.+.+..+.+ +...++|+.|+||+++|..+++..--. ...+.-..|+.-....+-.
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~ 84 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGK 84 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccccc
Confidence 689999999999999988774 799999999999999998887765210 0111122343211000000
Q ss_pred HHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHh-----cCCcEEEEEecccCccc-----cccc-CCCCCCCcEEEEe
Q 003753 198 KIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRL-----SNKKFALLLDDLRERIE-----LSEA-GVPVQNASKIVFT 266 (798)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~~-----~~~~-~~p~~~gs~iivT 266 (798)
.+-..-++..+... ........++ ++.+.+.+ .+++-++|+|+++.... +.+. --|. +..-|++|
T Consensus 85 ~~~~~~~~~~~~~~--~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~ 160 (314)
T PRK07399 85 LITASEAEEAGLKR--KAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIA 160 (314)
T ss_pred ccchhhhhhccccc--cccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEE
Confidence 00001111111100 0001112222 33444444 34667899999876531 2222 2233 44344445
Q ss_pred CCchHHhhhc-CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003753 267 TIFEEVCSSM-SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTI 332 (798)
Q Consensus 267 TR~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 332 (798)
+....+.... .-...+.+.++++++..+.+.+....... ......++..++|.|..+...
T Consensus 161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~------~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL------NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc------hhHHHHHHHHcCCCHHHHHHH
Confidence 5444443322 23467899999999999999876432110 111357889999999765543
No 193
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.17 E-value=0.00091 Score=60.57 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=20.6
Q ss_pred EEEEecCCchHHHHHHHHHHHh
Q 003753 154 IGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~ 175 (798)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999987
No 194
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.16 E-value=0.0032 Score=63.63 Aligned_cols=168 Identities=17% Similarity=0.223 Sum_probs=100.8
Q ss_pred cccchhHHHHHHHHHhhc----CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCH-HHHHHHHHH
Q 003753 131 NIVGIESRLSEVWRYIED----DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNI-EKIQDVIRS 205 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~-~~~~~~i~~ 205 (798)
.++|-..+..++-+++.+ ++..-+.|+|+.|.|||+|......+..... +..+-|......-. .-.++.|..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~---E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENG---ENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcC---CeEEEEEECccchhhHHHHHHHHH
Confidence 588999999999998854 5667888999999999999988777642223 33344444433222 223444554
Q ss_pred HcCCCCCCCccccCCHHHHHHHHHHHhcC------CcEEEEEecccCccc---------ccccCCC-CCCCcEEEEeCCc
Q 003753 206 RLGIDPDGDKWKNRDDQGRAAEIFRRLSN------KKFALLLDDLRERIE---------LSEAGVP-VQNASKIVFTTIF 269 (798)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~------~r~LlVlDdv~~~~~---------~~~~~~p-~~~gs~iivTTR~ 269 (798)
++............+..+....+...|+. -++.+|+|.++-... +-+..-. ..+-+-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 44322211111233444555556666543 468889988764321 1111000 3455677789995
Q ss_pred h-------HHhhhcCCCcceeccCCChHHHHHHHHHhcc
Q 003753 270 E-------EVCSSMSVDWRFKVDYLPQEEAWNLFRLKVT 301 (798)
Q Consensus 270 ~-------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~ 301 (798)
. .|-..+....++-++.++-++...++++...
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 4 2333444444667788888888888888764
No 195
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.15 E-value=0.0004 Score=67.67 Aligned_cols=85 Identities=20% Similarity=0.155 Sum_probs=42.5
Q ss_pred hhceeeEEeecCCCCCC-----CCCCCCCCCcceeeeecccc----cccccHH------HHhcCCceeEEeCCCCcccc-
Q 003753 491 WKEAVRVSLWRSPSIDS-----LSPTPPCSPRLLTLLVRYTM----IKEFENK------FFKSMYALRVLDSSQNAKLS- 554 (798)
Q Consensus 491 ~~~l~~lsl~~~~~~~~-----l~~~~~~~~~L~~L~l~~~~----~~~l~~~------~~~~l~~Lr~L~L~~~~~i~- 554 (798)
...+..+.+++| .+.. +...+.+-.+|+..+++.-- -..++.. .+-+|++|+..+||.| .+.
T Consensus 29 ~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Afg~ 106 (388)
T COG5238 29 MDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AFGS 106 (388)
T ss_pred hcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-ccCc
Confidence 345666666666 4432 22233445556666555431 1112211 1445666666777666 443
Q ss_pred cccc----cccCCCCCCEEEcCCCCCc
Q 003753 555 KLHV----GEGELIDLQYLNLSNTNIC 577 (798)
Q Consensus 555 ~lp~----~i~~L~~L~~L~Ls~~~i~ 577 (798)
..|+ -|++-..|.+|.+++|.+-
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCC
Confidence 2232 3445566666666666543
No 196
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.14 E-value=0.024 Score=55.60 Aligned_cols=175 Identities=18% Similarity=0.241 Sum_probs=101.9
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEc-CCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHH-
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKA-STELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAA- 226 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~- 226 (798)
++-+++.++|.-|+|||.+.+.......+ +.++-+.+ ....+...+...|+..+..+. .........
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~-----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p------~~~~~~~~e~ 117 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNE-----DQVAVVVIDKPTLSDATLLEAIVADLESQP------KVNVNAVLEQ 117 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCC-----CceEEEEecCcchhHHHHHHHHHHHhccCc------cchhHHHHHH
Confidence 45579999999999999999965554421 22222333 344567888888888887633 233333333
Q ss_pred ---HHHHHh-cCCc-EEEEEecccCcc--cccc---cCCCCCCC---cEEEEeCC---ch----HHhhhcC--CCcceec
Q 003753 227 ---EIFRRL-SNKK-FALLLDDLRERI--ELSE---AGVPVQNA---SKIVFTTI---FE----EVCSSMS--VDWRFKV 284 (798)
Q Consensus 227 ---~l~~~l-~~~r-~LlVlDdv~~~~--~~~~---~~~p~~~g---s~iivTTR---~~----~v~~~~~--~~~~~~l 284 (798)
.+.... +++| ..++.||..... .++. +..-...+ -+|+..-. .+ .+....+ ..-.|++
T Consensus 118 ~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l 197 (269)
T COG3267 118 IDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIEL 197 (269)
T ss_pred HHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEec
Confidence 333333 4567 899999976542 1111 11000111 12222211 01 1111111 1122899
Q ss_pred cCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHH
Q 003753 285 DYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGS 334 (798)
Q Consensus 285 ~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 334 (798)
.|++.++...+++.+..+.....+---.+....|.....|.|.+|..++.
T Consensus 198 ~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 198 PPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred CCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999999998888876553222222245678899999999999988763
No 197
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.12 E-value=0.0018 Score=73.58 Aligned_cols=46 Identities=24% Similarity=0.409 Sum_probs=39.3
Q ss_pred CcccchhHHHHHHHHHhhcC-----CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 130 NNIVGIESRLSEVWRYIEDD-----GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.+++|-++.++++..++... ..+++.|+|++|+||||+++.++...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999652 33579999999999999999998765
No 198
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.10 E-value=0.0085 Score=65.11 Aligned_cols=134 Identities=19% Similarity=0.114 Sum_probs=81.5
Q ss_pred chhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCC
Q 003753 134 GIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDG 213 (798)
Q Consensus 134 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 213 (798)
.|.....++.+.+..... ++.|.|+-++||||+++.+..... +. ++++...+......-+.
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~---~~---~iy~~~~d~~~~~~~l~------------ 81 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLL---EE---IIYINFDDLRLDRIELL------------ 81 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCC---cc---eEEEEecchhcchhhHH------------
Confidence 344556666666654433 999999999999999977766552 22 55554333211111001
Q ss_pred CccccCCHHHHHHHHHHHhcCCcEEEEEecccCcccccccCCC---CCCCcEEEEeCCchHHhh-----hc-CCCcceec
Q 003753 214 DKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIELSEAGVP---VQNASKIVFTTIFEEVCS-----SM-SVDWRFKV 284 (798)
Q Consensus 214 ~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~~p---~~~gs~iivTTR~~~v~~-----~~-~~~~~~~l 284 (798)
+....+.+.-..++..++||.|....+|...... .++. +|++|+-+..... .. |-...+.+
T Consensus 82 ---------d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l 151 (398)
T COG1373 82 ---------DLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLEL 151 (398)
T ss_pred ---------HHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEE
Confidence 1111111111127889999999999998876332 2333 8999888776532 22 33457899
Q ss_pred cCCChHHHHHHH
Q 003753 285 DYLPQEEAWNLF 296 (798)
Q Consensus 285 ~~L~~~~a~~Lf 296 (798)
.||+..|-..+-
T Consensus 152 ~PlSF~Efl~~~ 163 (398)
T COG1373 152 YPLSFREFLKLK 163 (398)
T ss_pred CCCCHHHHHhhc
Confidence 999988876543
No 199
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.009 Score=65.11 Aligned_cols=92 Identities=18% Similarity=0.256 Sum_probs=62.0
Q ss_pred cccchhHHHHHHHHHhhc------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHH
Q 003753 131 NIVGIESRLSEVWRYIED------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEK 198 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 198 (798)
++=|.+..+.++.+.+.. ...+=|.+||++|.|||.||+.++++. .-. ++.++.+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vP-----f~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVP-----FLSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---CCc-----eEeecch-----
Confidence 455899999888887732 235678899999999999999999987 222 2333332
Q ss_pred HHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCc
Q 003753 199 IQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRER 247 (798)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~ 247 (798)
+|+... ...+++.+.+...+.-..-++++++|+++..
T Consensus 258 ---eivSGv---------SGESEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 258 ---EIVSGV---------SGESEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred ---hhhccc---------CcccHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 222221 2334445555555566678999999999754
No 200
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.06 E-value=0.0013 Score=62.60 Aligned_cols=72 Identities=22% Similarity=0.266 Sum_probs=54.3
Q ss_pred CcccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDV 202 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 202 (798)
.++||-++.++++--.-.+++.+-+.|.||+|+||||-+..+++... ...+-+.+.-.++|++..++-+-..
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LL-G~~~ke~vLELNASdeRGIDvVRn~ 98 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELL-GDSYKEAVLELNASDERGIDVVRNK 98 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHh-ChhhhhHhhhccCccccccHHHHHH
Confidence 37999999999998888889999999999999999999988888762 1233455666666665544444333
No 201
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.028 Score=58.75 Aligned_cols=175 Identities=14% Similarity=0.117 Sum_probs=93.5
Q ss_pred hHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCC-----
Q 003753 136 ESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGI----- 209 (798)
Q Consensus 136 ~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~----- 209 (798)
+...+++.+.+..+++ ..+.++|+.|+||+++|..++...-- .....+- .. ..-+.+ ..-..
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC-~~~~~~~-------~c---~~c~~~-~~g~HPD~~~ 77 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA-SGPDPAA-------AQ---RTRQLI-AAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC-CCCCCCC-------cc---hHHHHH-hcCCCCCEEE
Confidence 4556677777766664 46889999999999999988776521 1100000 00 000000 00000
Q ss_pred ---CCCC-C-cc-ccCCHHHHHHHHHHHh-----cCCcEEEEEecccCcc-----ccccc-CCCCCCCcEEEEeCCc-hH
Q 003753 210 ---DPDG-D-KW-KNRDDQGRAAEIFRRL-----SNKKFALLLDDLRERI-----ELSEA-GVPVQNASKIVFTTIF-EE 271 (798)
Q Consensus 210 ---~~~~-~-~~-~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~-----~~~~~-~~p~~~gs~iivTTR~-~~ 271 (798)
.++. . .. .....+ .++.+.+.+ .+++=++|+|+++... .+.+. .-| ..++.+|++|.+ ..
T Consensus 78 i~~~p~~~~~k~~~~I~id-qIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-p~~~~fiL~~~~~~~ 155 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIE-QVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEP-SPGRYLWLISAQPAR 155 (319)
T ss_pred EecCCCcccccccccccHH-HHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCC-CCCCeEEEEECChhh
Confidence 0000 0 00 001122 222333333 2456689999988653 22222 223 345666655554 44
Q ss_pred Hhhhc-CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHH
Q 003753 272 VCSSM-SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIG 333 (798)
Q Consensus 272 v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 333 (798)
+.... .-...+.+.+++.+++.+.+.+. + .+ ...+..++..++|.|+.+..+.
T Consensus 156 lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~-----~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 156 LPATIRSRCQRLEFKLPPAHEALAWLLAQ-G-----VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CchHHHhhheEeeCCCcCHHHHHHHHHHc-C-----CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 43322 23457889999999998888653 1 11 1226678999999998765543
No 202
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.95 E-value=0.023 Score=60.27 Aligned_cols=159 Identities=11% Similarity=0.048 Sum_probs=81.6
Q ss_pred cccc-hhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcC
Q 003753 131 NIVG-IESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 131 ~~vG-r~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 208 (798)
.++| -+..++.+.+.+..+++ +...++|+.|+||||+|+.+.+...- ....... .+... ..-+.+... .
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c-~~~~~~~---~cg~C----~~c~~~~~~-~ 76 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC-LERNGVE---PCGTC----TNCKRIDSG-N 76 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCC---CCCcC----HHHHHHhcC-C
Confidence 3667 77788888888877664 56689999999999999998776521 1100000 00000 001111000 0
Q ss_pred CCCC---CCccccCCHHHHHHHHHHH-----hcCCcEEEEEecccCccc-----ccccCCCCCCCcEEEEeCCch-HHhh
Q 003753 209 IDPD---GDKWKNRDDQGRAAEIFRR-----LSNKKFALLLDDLRERIE-----LSEAGVPVQNASKIVFTTIFE-EVCS 274 (798)
Q Consensus 209 ~~~~---~~~~~~~~~~~~~~~l~~~-----l~~~r~LlVlDdv~~~~~-----~~~~~~p~~~gs~iivTTR~~-~v~~ 274 (798)
.++- ...-.....++... +.+. ..+++=++|+|+++.... +.+..-....++.+|++|.+. .+..
T Consensus 77 hpD~~~i~~~~~~i~id~ir~-l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~ 155 (329)
T PRK08058 77 HPDVHLVAPDGQSIKKDQIRY-LKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILP 155 (329)
T ss_pred CCCEEEeccccccCCHHHHHH-HHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcH
Confidence 0000 00000111222222 2222 234556789999876532 222211124566666666543 3322
Q ss_pred hc-CCCcceeccCCChHHHHHHHHHh
Q 003753 275 SM-SVDWRFKVDYLPQEEAWNLFRLK 299 (798)
Q Consensus 275 ~~-~~~~~~~l~~L~~~~a~~Lf~~~ 299 (798)
.. .-...+++.++++++..+.+.+.
T Consensus 156 TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 156 TILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 22 23467899999999998888653
No 203
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.93 E-value=0.005 Score=61.71 Aligned_cols=90 Identities=17% Similarity=0.383 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhc--CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCC
Q 003753 137 SRLSEVWRYIED--DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGD 214 (798)
Q Consensus 137 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 214 (798)
..+..+.++..+ .+...+.++|.+|+|||+||..+++... ..-..+++++ ..++...+..... .
T Consensus 83 ~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~-~---- 148 (244)
T PRK07952 83 NALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFS-N---- 148 (244)
T ss_pred HHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHh-h----
Confidence 344555555533 2335789999999999999999999873 2234556663 4455555544332 1
Q ss_pred ccccCCHHHHHHHHHHHhcCCcEEEEEecccCc
Q 003753 215 KWKNRDDQGRAAEIFRRLSNKKFALLLDDLRER 247 (798)
Q Consensus 215 ~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~ 247 (798)
...+.. .+.+.+. +.=+||+||+...
T Consensus 149 --~~~~~~----~~l~~l~-~~dlLvIDDig~~ 174 (244)
T PRK07952 149 --SETSEE----QLLNDLS-NVDLLVIDEIGVQ 174 (244)
T ss_pred --ccccHH----HHHHHhc-cCCEEEEeCCCCC
Confidence 111222 2333344 3458888998654
No 204
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.92 E-value=0.028 Score=62.57 Aligned_cols=193 Identities=17% Similarity=0.172 Sum_probs=115.5
Q ss_pred cccchhHHHHHHHHHhhc-----CCceEEEEEecCCchHHHHHHHHHHHhhh--hc---CCCCeEEEEEcCCccCHHHHH
Q 003753 131 NIVGIESRLSEVWRYIED-----DGVKIIGLYGVRGVGKSTLLKQLNDTFSD--MS---HKFGAVIMVKASTELNIEKIQ 200 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~---~~f~~~~wv~vs~~~~~~~~~ 200 (798)
.+-+|+.+..+|..++.. +..+.+.|.|-+|+|||..+..|.+.... .+ ..|+ .+.|+.-.-....+++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHH
Confidence 356899999999988832 34469999999999999999999886521 11 2333 3445555556799999
Q ss_pred HHHHHHcCCCCCCCccccCCHHHHHHHHHHHhc-----CCcEEEEEecccCc----cccc-c-cCCCCCCCcEEEEeCCc
Q 003753 201 DVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLS-----NKKFALLLDDLRER----IELS-E-AGVPVQNASKIVFTTIF 269 (798)
Q Consensus 201 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-----~~r~LlVlDdv~~~----~~~~-~-~~~p~~~gs~iivTTR~ 269 (798)
..|..++.... .......+.+..+.. .+..++++|+++.. ++.. . +..|..++||++|-+=.
T Consensus 476 ~~I~~~lsg~~-------~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 476 EKIWEALSGER-------VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHhcccCc-------ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEec
Confidence 99999987654 223334444444443 36788999987643 2222 1 23446778887764421
Q ss_pred --h---------HHhhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003753 270 --E---------EVCSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTI 332 (798)
Q Consensus 270 --~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 332 (798)
. .++..+| ...+..++.+.++-.++...+..+...-...-.+=++++|+...|..-.|+.+.
T Consensus 549 NTmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred ccccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 1 1112221 124566777777777777666554322222233334555555555544444444
No 205
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=5.6e-05 Score=73.68 Aligned_cols=78 Identities=28% Similarity=0.213 Sum_probs=41.0
Q ss_pred cceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccC--ccccCCCcccEEeC
Q 003753 517 RLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELP--IGIKSCTHLRTLLL 594 (798)
Q Consensus 517 ~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp--~~i~~l~~L~~L~l 594 (798)
+.+.|++.+|.+.+|.- ...|+.|.+|.||-| .|+.|. .+..+++|+.|.|+.|.|..+- .-+.++++|+.|-|
T Consensus 20 ~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHHH--HHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 44455555555555443 455666666666666 555552 2555555666666555554442 13445555555555
Q ss_pred CCCC
Q 003753 595 DGTE 598 (798)
Q Consensus 595 ~~~~ 598 (798)
..|.
T Consensus 96 ~ENP 99 (388)
T KOG2123|consen 96 DENP 99 (388)
T ss_pred ccCC
Confidence 5443
No 206
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.90 E-value=0.003 Score=61.24 Aligned_cols=90 Identities=23% Similarity=0.238 Sum_probs=55.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCcc-CHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTEL-NIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF 229 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 229 (798)
++|+.++|+.|+||||.+.+++.... .+ -..+..++..... ...+-++..++.++.+.... ....+..+......
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~--~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~-~~~~~~~~~~~~~l 76 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK--LK-GKKVALISADTYRIGAVEQLKTYAEILGVPFYVA-RTESDPAEIAREAL 76 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH--HT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEES-STTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh--hc-cccceeecCCCCCccHHHHHHHHHHHhccccchh-hcchhhHHHHHHHH
Confidence 47999999999999999988888873 22 4456777764433 36677788888888764210 01224445444434
Q ss_pred HHhcCC-cEEEEEecc
Q 003753 230 RRLSNK-KFALLLDDL 244 (798)
Q Consensus 230 ~~l~~~-r~LlVlDdv 244 (798)
+..+.+ .=++++|-.
T Consensus 77 ~~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 77 EKFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHHTTSSEEEEEE-
T ss_pred HHHhhcCCCEEEEecC
Confidence 444433 347777765
No 207
>PRK08181 transposase; Validated
Probab=96.88 E-value=0.0048 Score=62.83 Aligned_cols=102 Identities=17% Similarity=0.142 Sum_probs=56.7
Q ss_pred HHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHH
Q 003753 144 RYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQG 223 (798)
Q Consensus 144 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 223 (798)
+|+.. ..-+.++|++|+|||.||..+.+... .....++|+. ..++...+..... ..+...
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~------~~~L~~~l~~a~~---------~~~~~~ 160 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTR------TTDLVQKLQVARR---------ELQLES 160 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeee------HHHHHHHHHHHHh---------CCcHHH
Confidence 45543 34599999999999999999998762 2233456654 3455555543311 112222
Q ss_pred HHHHHHHHhcCCcEEEEEecccCcc--c-ccccCCC----CCCCcEEEEeCCch
Q 003753 224 RAAEIFRRLSNKKFALLLDDLRERI--E-LSEAGVP----VQNASKIVFTTIFE 270 (798)
Q Consensus 224 ~~~~l~~~l~~~r~LlVlDdv~~~~--~-~~~~~~p----~~~gs~iivTTR~~ 270 (798)
.. +.+. +.=|||+||+.... + +....+. ...+..+||||...
T Consensus 161 ~l----~~l~-~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 161 AI----AKLD-KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HH----HHHh-cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 22 2222 34599999986431 1 1111111 11124688888643
No 208
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.85 E-value=0.00024 Score=80.44 Aligned_cols=111 Identities=20% Similarity=0.146 Sum_probs=58.7
Q ss_pred CCCcceeeeeccc-cccccc-HHHHhcCCceeEEeCCCC-ccccccc----ccccCCCCCCEEEcCCCC-Cccc--Cccc
Q 003753 514 CSPRLLTLLVRYT-MIKEFE-NKFFKSMYALRVLDSSQN-AKLSKLH----VGEGELIDLQYLNLSNTN-ICEL--PIGI 583 (798)
Q Consensus 514 ~~~~L~~L~l~~~-~~~~l~-~~~~~~l~~Lr~L~L~~~-~~i~~lp----~~i~~L~~L~~L~Ls~~~-i~~l--p~~i 583 (798)
.+++|+.|.+.++ .+.... ......+++|+.|+++++ ..+...+ .....+.+|+.|+++++. ++.. ..-.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3677777777766 333311 223566777888887762 1222111 223345677777777775 3322 1111
Q ss_pred cCCCcccEEeCCCCCCcccccc-hhhcCCCCCccccccCCCC
Q 003753 584 KSCTHLRTLLLDGTENLKAIPV-GMLSSLLSLRVFSWVPTRY 624 (798)
Q Consensus 584 ~~l~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~ 624 (798)
..+++|++|.+.+|..++...- .+...+++|++|++++|..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 2366777777666653322211 1134566677777776654
No 209
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.84 E-value=0.0091 Score=62.12 Aligned_cols=88 Identities=19% Similarity=0.203 Sum_probs=57.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCc-cccCCHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDK-WKNRDDQGRAAEIF 229 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~ 229 (798)
-+++-|+|++|+||||||.+++... ...-..++|++....++.. .+++++.+.+.-. ....+.++....+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 5799999999999999999987766 2334568899887776643 4455554332110 02234455555555
Q ss_pred HHhcC-CcEEEEEecccC
Q 003753 230 RRLSN-KKFALLLDDLRE 246 (798)
Q Consensus 230 ~~l~~-~r~LlVlDdv~~ 246 (798)
..++. ..-++|+|.|-.
T Consensus 127 ~li~s~~~~lIVIDSvaa 144 (325)
T cd00983 127 SLVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHHhccCCCEEEEcchHh
Confidence 55544 566899999754
No 210
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.79 E-value=0.015 Score=54.58 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=32.6
Q ss_pred chhHHHHHHHHHhhcCCce-EEEEEecCCchHHHHHHHHHHHh
Q 003753 134 GIESRLSEVWRYIEDDGVK-IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 134 Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
|-++..+.|.+.+..+..+ .+.++|..|+||+|+|..+++..
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 5567778888888776654 68999999999999999887765
No 211
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.78 E-value=0.014 Score=69.38 Aligned_cols=169 Identities=16% Similarity=0.196 Sum_probs=92.0
Q ss_pred cccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHH
Q 003753 131 NIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIE 197 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 197 (798)
++.|.+..++++.+++.- ...+-+.++|++|+|||+||+.+++.. ...| +.++.+
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~------ 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGP------ 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecH------
Confidence 477999999998887631 234678899999999999999998876 2222 222211
Q ss_pred HHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc----------------cccccCCC-CCCC
Q 003753 198 KIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI----------------ELSEAGVP-VQNA 260 (798)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~----------------~~~~~~~p-~~~g 260 (798)
++. ... .......+...+.......+.+|++|+++... .+..+.-. ...+
T Consensus 247 ~i~----~~~---------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~ 313 (733)
T TIGR01243 247 EIM----SKY---------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRG 313 (733)
T ss_pred HHh----ccc---------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCC
Confidence 111 000 11112223333333445567899999986431 01111000 1233
Q ss_pred cEEEE-eCCchH-Hhhhc----CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchH
Q 003753 261 SKIVF-TTIFEE-VCSSM----SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLA 328 (798)
Q Consensus 261 s~iiv-TTR~~~-v~~~~----~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 328 (798)
..++| ||.... +...+ .-...+.++..+.++-.++++..........+. ....+++.+.|.--|
T Consensus 314 ~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~----~l~~la~~t~G~~ga 383 (733)
T TIGR01243 314 RVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDV----DLDKLAEVTHGFVGA 383 (733)
T ss_pred CEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcccc----CHHHHHHhCCCCCHH
Confidence 34444 454332 11111 123457778888888888888655432211111 256677888886543
No 212
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.78 E-value=0.0061 Score=61.07 Aligned_cols=45 Identities=27% Similarity=0.354 Sum_probs=35.5
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKI 199 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 199 (798)
-.++.|+|.+|+|||++|.+++.... ..-..++|++.. .++.+.+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHH
Confidence 57999999999999999999988762 334678999887 5555444
No 213
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.77 E-value=0.0022 Score=67.03 Aligned_cols=57 Identities=21% Similarity=0.351 Sum_probs=45.3
Q ss_pred cccchhHHHHHHHHHhhc------CCceEEEEEecCCchHHHHHHHHHHHhhhh----cCCCCeEEE
Q 003753 131 NIVGIESRLSEVWRYIED------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDM----SHKFGAVIM 187 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~f~~~~w 187 (798)
+++|.++.++++++++.. ...++++++|++|+||||||+.+.+..... .+.|-..-|
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 699999999999999944 245899999999999999999998887321 124555556
No 214
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.77 E-value=0.021 Score=67.76 Aligned_cols=167 Identities=19% Similarity=0.264 Sum_probs=94.3
Q ss_pred cccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHH
Q 003753 131 NIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIE 197 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 197 (798)
++.|.+..+++|.+.+.- ...+-+.++|++|+|||++|+.+++.. ...| +.+..+
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f---i~v~~~------ 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF---IAVRGP------ 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEehH------
Confidence 577888888887776521 224568899999999999999999876 2232 222211
Q ss_pred HHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc---------cc-----ccc-----CCCCC
Q 003753 198 KIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI---------EL-----SEA-----GVPVQ 258 (798)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~---------~~-----~~~-----~~p~~ 258 (798)
+ ++.. +...+...+.......-...+.+|++|+++... .. ..+ ++...
T Consensus 522 ~----l~~~---------~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 522 E----ILSK---------WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred H----Hhhc---------ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 1 1111 011222223233333334578999999986431 00 001 01122
Q ss_pred CCcEEEEeCCchHHhhh-----cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc
Q 003753 259 NASKIVFTTIFEEVCSS-----MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP 326 (798)
Q Consensus 259 ~gs~iivTTR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 326 (798)
.+.-||.||...+.... ..-...+.++..+.++-.++|+.+..........+ ...+++.+.|.-
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 34456667765544211 12345788888899999999987665433222222 355667777654
No 215
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.76 E-value=0.0013 Score=58.67 Aligned_cols=23 Identities=43% Similarity=0.629 Sum_probs=21.6
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
||+|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 216
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.73 E-value=0.00081 Score=65.74 Aligned_cols=104 Identities=24% Similarity=0.216 Sum_probs=51.4
Q ss_pred CCcceeeeecccccccccHHHHhcCCceeEEeCCCC--cccccccccccCCCCCCEEEcCCCCCcccC--ccccCCCccc
Q 003753 515 SPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQN--AKLSKLHVGEGELIDLQYLNLSNTNICELP--IGIKSCTHLR 590 (798)
Q Consensus 515 ~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~--~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp--~~i~~l~~L~ 590 (798)
+..|..|.+.+..++.+.. |-.|++|++|.++.| .-...++-....+++|++|++++|+|+.+. ..+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3444444444443333322 344566666666666 112233333444566666666666554321 1344555666
Q ss_pred EEeCCCCCCccccc---chhhcCCCCCccccccC
Q 003753 591 TLLLDGTENLKAIP---VGMLSSLLSLRVFSWVP 621 (798)
Q Consensus 591 ~L~l~~~~~l~~lp---~~~i~~L~~L~~L~l~~ 621 (798)
.|++.+|. ...+- ..++.-+++|.+|+-..
T Consensus 120 ~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 120 SLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhcccCC-ccccccHHHHHHHHhhhhccccccc
Confidence 66666665 22222 22344566666666544
No 217
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.70 E-value=0.00063 Score=66.50 Aligned_cols=82 Identities=22% Similarity=0.312 Sum_probs=48.8
Q ss_pred cCCceeEEeCCCCcccccccccccCCCCCCEEEcCCC--CCc-ccCccccCCCcccEEeCCCCCCcc---cccchhhcCC
Q 003753 538 SMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNT--NIC-ELPIGIKSCTHLRTLLLDGTENLK---AIPVGMLSSL 611 (798)
Q Consensus 538 ~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~--~i~-~lp~~i~~l~~L~~L~l~~~~~l~---~lp~~~i~~L 611 (798)
.+..|..|++.++ .++.+ ..+..|++|++|.+|.| .+. .++....++++|++|++++|+ +. .+++ +..+
T Consensus 41 ~~~~le~ls~~n~-gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~p--l~~l 115 (260)
T KOG2739|consen 41 EFVELELLSVINV-GLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRP--LKEL 115 (260)
T ss_pred cccchhhhhhhcc-ceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccch--hhhh
Confidence 3455566666665 55544 22445777777777777 332 444445556777777777776 33 3333 4556
Q ss_pred CCCccccccCCCC
Q 003753 612 LSLRVFSWVPTRY 624 (798)
Q Consensus 612 ~~L~~L~l~~~~~ 624 (798)
.+|..|+++.|..
T Consensus 116 ~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 116 ENLKSLDLFNCSV 128 (260)
T ss_pred cchhhhhcccCCc
Confidence 6667777766654
No 218
>PRK06526 transposase; Provisional
Probab=96.68 E-value=0.0032 Score=63.75 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=22.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..-+.++|++|+|||+||..+....
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 4568999999999999999998876
No 219
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.68 E-value=0.088 Score=55.15 Aligned_cols=173 Identities=11% Similarity=0.115 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCC---
Q 003753 137 SRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPD--- 212 (798)
Q Consensus 137 ~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--- 212 (798)
...+.+.+.+..+.+ ....++|+.|+||+++|+.++...-- ...... .....-..-+.+.. +..++
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC-~~~~~~-------~~Cg~C~sC~~~~~--g~HPD~~~ 78 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC-QTPQGD-------QPCGQCHSCHLFQA--GNHPDFHI 78 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC-CCCCCC-------CCCCCCHHHHHHhc--CCCCCEEE
Confidence 345567777766554 67779999999999999998876521 010000 00000011111110 00000
Q ss_pred -CC-ccccCCHHHHHHHHHHHh-----cCCcEEEEEecccCcc-----ccccc-CCCCCCCcEEEEeCCc-hHHhhhc-C
Q 003753 213 -GD-KWKNRDDQGRAAEIFRRL-----SNKKFALLLDDLRERI-----ELSEA-GVPVQNASKIVFTTIF-EEVCSSM-S 277 (798)
Q Consensus 213 -~~-~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~-----~~~~~-~~p~~~gs~iivTTR~-~~v~~~~-~ 277 (798)
.+ .......++. +.+.+.+ .+++=++|+|+++... .+.+. --| ..++.+|++|.+ ..+.... .
T Consensus 79 i~p~~~~~I~id~i-R~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEP-p~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 79 LEPIDNKDIGVDQV-REINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEP-RPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred EccccCCCCCHHHH-HHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCC-CCCeEEEEEECChHhCchHHHh
Confidence 00 0011122222 2233333 3566688899988653 12222 222 345556555554 4444332 2
Q ss_pred CCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHH
Q 003753 278 VDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLAL 329 (798)
Q Consensus 278 ~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 329 (798)
-...+.+.++++++..+.+.+.... . ...+...++.++|.|..+
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~~~-----~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQSSA-----E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHhcc-----C---hHHHHHHHHHcCCCHHHH
Confidence 3467899999999999888776421 1 112556788999999643
No 220
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.68 E-value=0.0073 Score=60.96 Aligned_cols=95 Identities=20% Similarity=0.272 Sum_probs=55.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcC----CCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCc-----cccCC
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSH----KFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDK-----WKNRD 220 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-----~~~~~ 220 (798)
.-.++.|+|.+|+|||+||.+++..... .. .-..++|++....++...+. ++++..+....... ....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~-~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQL-PIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeC-ccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCC
Confidence 3479999999999999999998755311 11 13679999988877654443 34444443221000 01112
Q ss_pred HHH---HHHHHHHHhcC--CcEEEEEecccC
Q 003753 221 DQG---RAAEIFRRLSN--KKFALLLDDLRE 246 (798)
Q Consensus 221 ~~~---~~~~l~~~l~~--~r~LlVlDdv~~ 246 (798)
.++ ....+.+.+.+ +.-++|+|.+..
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 222 23334444433 455888888754
No 221
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.67 E-value=0.0073 Score=59.71 Aligned_cols=47 Identities=21% Similarity=0.329 Sum_probs=36.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQD 201 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 201 (798)
-.++.|+|.+|+|||++|.+++.... ..-..++|++... ++...+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHHH
Confidence 47999999999999999999887762 3357889998875 66555544
No 222
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.67 E-value=0.0059 Score=63.62 Aligned_cols=112 Identities=19% Similarity=0.242 Sum_probs=66.0
Q ss_pred chhHHHHHHHHHhhc----CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 134 GIESRLSEVWRYIED----DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 134 Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
++....+...+++.. ...+-+.++|..|+|||.||..+++... ...+ .+.++++ .+++.++....+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~-~v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGV-SSTLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCC-CEEEEEH------HHHHHHHHHHHhc
Confidence 565556666666643 2346799999999999999999999983 2333 3455544 3455555544321
Q ss_pred CCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCc--ccccc--cCCC-----CCCCcEEEEeCC
Q 003753 210 DPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRER--IELSE--AGVP-----VQNASKIVFTTI 268 (798)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~--~~~p-----~~~gs~iivTTR 268 (798)
.+..+.. +.+. +-=||||||+... .+|.. +..+ -..+-.+|+||-
T Consensus 206 ---------~~~~~~l----~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 ---------GSVKEKI----DAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred ---------CcHHHHH----HHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1122222 2222 4568999998644 23432 2111 134567788885
No 223
>PRK06921 hypothetical protein; Provisional
Probab=96.66 E-value=0.0052 Score=62.80 Aligned_cols=39 Identities=26% Similarity=0.286 Sum_probs=29.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEc
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKA 190 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 190 (798)
....+.++|..|+|||+||..+++... +..-..++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 456799999999999999999999873 221345667654
No 224
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.63 E-value=0.0059 Score=61.67 Aligned_cols=96 Identities=15% Similarity=0.182 Sum_probs=57.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCcc-CHHHHHHHHHHHcCCCCCC--CccccCCHH----
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTEL-NIEKIQDVIRSRLGIDPDG--DKWKNRDDQ---- 222 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~~---- 222 (798)
.-..++|.|..|+||||||+++++... .++-+.++++-+++.. .+.++..++...=.....- ....+....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~--~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 346899999999999999999999873 2233456666676654 4666666665431111000 000111111
Q ss_pred --HHHHHHHHHh---cCCcEEEEEecccCc
Q 003753 223 --GRAAEIFRRL---SNKKFALLLDDLRER 247 (798)
Q Consensus 223 --~~~~~l~~~l---~~~r~LlVlDdv~~~ 247 (798)
..+-.+.+++ +++.+|+++||+-..
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 1222344555 389999999998654
No 225
>PRK04296 thymidine kinase; Provisional
Probab=96.63 E-value=0.0028 Score=61.44 Aligned_cols=112 Identities=17% Similarity=0.139 Sum_probs=64.7
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRR 231 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 231 (798)
.++.|+|..|.||||+|..+..+.. .+-..++.+. ..++.......++++++..... .......+....+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~--~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREA--IPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEe--ccccccccCCcEecCCCCcccc--eEeCChHHHHHHHHh-
Confidence 5788999999999999999888872 2233344442 2222222344566666654321 112234444555544
Q ss_pred hcCCcEEEEEecccCc--ccccccCCC-CCCCcEEEEeCCchH
Q 003753 232 LSNKKFALLLDDLRER--IELSEAGVP-VQNASKIVFTTIFEE 271 (798)
Q Consensus 232 l~~~r~LlVlDdv~~~--~~~~~~~~p-~~~gs~iivTTR~~~ 271 (798)
..++.-+||+|.+... +++.++.-- ...|..||+|.++.+
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 3335559999998643 112222111 356888999998754
No 226
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.57 E-value=0.0055 Score=64.40 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=28.5
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEc
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKA 190 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 190 (798)
.-+.++|..|+|||+||..+++... ... ..++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~--~~g-~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL--DRG-KSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH--HCC-CeEEEEEH
Confidence 7799999999999999999999873 232 35666654
No 227
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.57 E-value=0.027 Score=62.55 Aligned_cols=169 Identities=13% Similarity=0.132 Sum_probs=89.6
Q ss_pred cccchhHHHHHHHHHh---hc-------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHH
Q 003753 131 NIVGIESRLSEVWRYI---ED-------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQ 200 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L---~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 200 (798)
++.|.+..++.+.+.. .. ...+-|.++|++|+|||.+|+.+++.. .-.| +-+..+ .+.
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~l~ 296 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------KLF 296 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------Hhc
Confidence 5778887776665432 11 234678999999999999999999886 2222 222211 111
Q ss_pred HHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc----c------ccc---CCC----CCCCcEE
Q 003753 201 DVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE----L------SEA---GVP----VQNASKI 263 (798)
Q Consensus 201 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~----~------~~~---~~p----~~~gs~i 263 (798)
. .. ...+...+...+...-...+++|++|+++.... . .++ .+. ...+.-|
T Consensus 297 ----~----~~-----vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 297 ----G----GI-----VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred ----c----cc-----cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 0 00 111222222222222235789999999874311 0 000 000 1223345
Q ss_pred EEeCCchHH-----hhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc
Q 003753 264 VFTTIFEEV-----CSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP 326 (798)
Q Consensus 264 ivTTR~~~v-----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 326 (798)
|.||.+.+- .+...-+..+.++.-+.++-.++|+.+.......... ..-...+++.+.|.-
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 557765432 1211234567888888999999998887553211100 111455666666554
No 228
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.12 Score=54.08 Aligned_cols=172 Identities=12% Similarity=0.096 Sum_probs=90.9
Q ss_pred HHHHHHHHHhhcCC-ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCC---
Q 003753 137 SRLSEVWRYIEDDG-VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPD--- 212 (798)
Q Consensus 137 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--- 212 (798)
...+++.+.+..+. ...+-++|+.|+||+++|..++...-- ..-... .++.. ..-+.|.. +..++
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC--~~~~~~---~Cg~C----~sC~~~~~--g~HPD~~~ 78 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLC--QNYQSE---ACGFC----HSCELMQS--GNHPDLHV 78 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcC--CCCCCC---CCCCC----HHHHHHHc--CCCCCEEE
Confidence 44566666666555 457889999999999999988776521 110000 00000 00111100 00000
Q ss_pred ---CCccccCCHHHHHHHHHHHh-----cCCcEEEEEecccCcc-----ccccc-CCCCCCCcEEEEeCC-chHHhhhc-
Q 003753 213 ---GDKWKNRDDQGRAAEIFRRL-----SNKKFALLLDDLRERI-----ELSEA-GVPVQNASKIVFTTI-FEEVCSSM- 276 (798)
Q Consensus 213 ---~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~-----~~~~~-~~p~~~gs~iivTTR-~~~v~~~~- 276 (798)
+........++. +.+.+.+ .+++=++|+|+++... .+.+. .-| ..++.+|++|. ...+....
T Consensus 79 i~p~~~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP-p~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 79 IKPEKEGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEP-APNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred EecCcCCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCC-CCCeEEEEEECChhhChHHHH
Confidence 000011222222 2233333 2345588899987653 12222 223 34455555544 44444332
Q ss_pred CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003753 277 SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTI 332 (798)
Q Consensus 277 ~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 332 (798)
.-...+.+.+++++++.+.+.+.-. + .+..+++.++|.|+.+..+
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~~------~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKGQGI------T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHHcCC------c-----hHHHHHHHcCCCHHHHHHH
Confidence 2346789999999999988865311 1 1356789999999976554
No 229
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0052 Score=70.38 Aligned_cols=105 Identities=19% Similarity=0.330 Sum_probs=67.9
Q ss_pred CcccchhHHHHHHHHHhhc---------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIED---------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQ 200 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 200 (798)
..++|.+..++.+.+.+.. ....+....|+.|+|||.||+.++... -+.=+..+-++.|+-..-..+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~EkHsV- 566 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEKHSV- 566 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHHHHH-
Confidence 3689999999999998832 234677889999999999999998765 222245566655554332222
Q ss_pred HHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcE-EEEEecccCc
Q 003753 201 DVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKF-ALLLDDLRER 247 (798)
Q Consensus 201 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~-LlVlDdv~~~ 247 (798)
.+-+|.+++ -...++ ...|-+.++.++| ++.||++...
T Consensus 567 ---SrLIGaPPG-----YVGyee-GG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 567 ---SRLIGAPPG-----YVGYEE-GGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred ---HHHhCCCCC-----Cceecc-ccchhHhhhcCCCeEEEechhhhc
Confidence 222344442 111112 3345667778877 7888999765
No 230
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.54 E-value=0.018 Score=59.89 Aligned_cols=89 Identities=18% Similarity=0.190 Sum_probs=57.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCc-cccCCHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDK-WKNRDDQGRAAEI 228 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l 228 (798)
.-+++-|+|++|+||||||.++..... ..-..++|++....++.. .+++++...+.-. ....+.++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 347999999999999999999877762 334567898877665543 4555655432110 1223445555555
Q ss_pred HHHhc-CCcEEEEEecccC
Q 003753 229 FRRLS-NKKFALLLDDLRE 246 (798)
Q Consensus 229 ~~~l~-~~r~LlVlDdv~~ 246 (798)
...++ +..-++|+|.|-.
T Consensus 126 ~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHhhccCCcEEEEcchhh
Confidence 55554 3566999999764
No 231
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.54 E-value=0.017 Score=57.84 Aligned_cols=92 Identities=18% Similarity=0.292 Sum_probs=56.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCC------CeEEEEEcCCccCHHHHHHHHHHHcCCCCCC--Cc---cccC
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKF------GAVIMVKASTELNIEKIQDVIRSRLGIDPDG--DK---WKNR 219 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f------~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~---~~~~ 219 (798)
-.++.|+|.+|+|||+||.+++.... ..- ..++|++....++...+. ++.+..+...+. +. ....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~---~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQ---LPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhh---cccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 57999999999999999999877652 223 567899988777765544 333433322110 00 0123
Q ss_pred CHHHHHHHHHHHhc---C-CcEEEEEecccC
Q 003753 220 DDQGRAAEIFRRLS---N-KKFALLLDDLRE 246 (798)
Q Consensus 220 ~~~~~~~~l~~~l~---~-~r~LlVlDdv~~ 246 (798)
+.++....+.+... . +.-|+|+|.+..
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 44555555554432 3 445888888754
No 232
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.52 E-value=0.036 Score=54.08 Aligned_cols=166 Identities=19% Similarity=0.338 Sum_probs=95.0
Q ss_pred CcccchhHHHHH---HHHHhhcC------CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHH
Q 003753 130 NNIVGIESRLSE---VWRYIEDD------GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQ 200 (798)
Q Consensus 130 ~~~vGr~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 200 (798)
+++||.++.+.+ |+++|.+. .++-|..+|++|.|||.+|+++++.. +-.| +-|. ..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~---l~vk---------at 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL---LLVK---------AT 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce---EEec---------hH
Confidence 468898877754 67777652 36889999999999999999999986 2222 1111 11
Q ss_pred HHHHHHcCCCCCCCccccCCHHHHHHHHHHHh-cCCcEEEEEecccCcc----------ccccc---------CCCCCCC
Q 003753 201 DVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRL-SNKKFALLLDDLRERI----------ELSEA---------GVPVQNA 260 (798)
Q Consensus 201 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~----------~~~~~---------~~p~~~g 260 (798)
.-|.+..| +-...+..+.+.- +.-++++.+|.++... +..++ ++-.+.|
T Consensus 186 ~liGehVG-----------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneG 254 (368)
T COG1223 186 ELIGEHVG-----------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEG 254 (368)
T ss_pred HHHHHHhh-----------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCc
Confidence 11222111 2223333333332 3478999999876531 11111 1114567
Q ss_pred cEEEEeCCchHHhhh---cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCC
Q 003753 261 SKIVFTTIFEEVCSS---MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGL 325 (798)
Q Consensus 261 s~iivTTR~~~v~~~---~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 325 (798)
...|-.|.+.+.... ..-..-|+...-+++|-.+++..++..-....... .+.++++.+|+
T Consensus 255 VvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 255 VVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred eEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 666777766665322 11223466666778888888888875433222222 44555555554
No 233
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.52 E-value=0.0056 Score=58.67 Aligned_cols=36 Identities=31% Similarity=0.496 Sum_probs=28.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEE
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMV 188 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 188 (798)
...+|.+.|+.|+||||+|+.++... ...+..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 44699999999999999999999887 3445555555
No 234
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.51 E-value=0.0078 Score=61.69 Aligned_cols=134 Identities=16% Similarity=0.187 Sum_probs=74.9
Q ss_pred chhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEE----EcCCcc---------CHHHHH
Q 003753 134 GIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMV----KASTEL---------NIEKIQ 200 (798)
Q Consensus 134 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv----~vs~~~---------~~~~~~ 200 (798)
+|..+..--+++|.++++..|.+.|.+|.|||.||-+..=..--.++.|..++-. .++++. -+.--.
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWm 307 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWM 307 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchH
Confidence 4666667778888999999999999999999988865432221124566655432 233321 111222
Q ss_pred HHHHHHcCCCCCCCccccCCHHHHHHHH----------HHHhcCC---cEEEEEecccCcc--cccccCCCCCCCcEEEE
Q 003753 201 DVIRSRLGIDPDGDKWKNRDDQGRAAEI----------FRRLSNK---KFALLLDDLRERI--ELSEAGVPVQNASKIVF 265 (798)
Q Consensus 201 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l----------~~~l~~~---r~LlVlDdv~~~~--~~~~~~~p~~~gs~iiv 265 (798)
+.|...+..-... .... +.....+ ..+.+|+ .-++|+|...+.. ++..+.-..+.||||+.
T Consensus 308 q~i~DnLE~L~~~---~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR~G~GsKIVl 383 (436)
T COG1875 308 QAIFDNLEVLFSP---NEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTRAGEGSKIVL 383 (436)
T ss_pred HHHHhHHHHHhcc---cccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHhccCCCEEEE
Confidence 3332222111100 1111 2222222 1233453 4589999998763 45555434789999999
Q ss_pred eCCchH
Q 003753 266 TTIFEE 271 (798)
Q Consensus 266 TTR~~~ 271 (798)
|---.+
T Consensus 384 ~gd~aQ 389 (436)
T COG1875 384 TGDPAQ 389 (436)
T ss_pred cCCHHH
Confidence 875443
No 235
>PRK06696 uridine kinase; Validated
Probab=96.45 E-value=0.0047 Score=61.67 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=35.3
Q ss_pred chhHHHHHHHHHhh---cCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 134 GIESRLSEVWRYIE---DDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 134 Gr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.|++.+++|.+.+. .+...+|+|.|.+|+||||||+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 46777778877774 3567899999999999999999999887
No 236
>PRK09354 recA recombinase A; Provisional
Probab=96.45 E-value=0.03 Score=58.87 Aligned_cols=89 Identities=18% Similarity=0.206 Sum_probs=58.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCc-cccCCHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDK-WKNRDDQGRAAEI 228 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l 228 (798)
.-+++-|+|++|+||||||.+++... ...-..++||+....++. ..+++++...+.-. ....+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 35799999999999999999987776 233467889988877775 34556665432110 1223345555555
Q ss_pred HHHhcC-CcEEEEEecccC
Q 003753 229 FRRLSN-KKFALLLDDLRE 246 (798)
Q Consensus 229 ~~~l~~-~r~LlVlDdv~~ 246 (798)
...++. ..-++|+|.|-.
T Consensus 131 ~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHHhhcCCCCEEEEeChhh
Confidence 555544 566899999764
No 237
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.44 E-value=0.023 Score=55.31 Aligned_cols=84 Identities=19% Similarity=0.170 Sum_probs=47.7
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhhhcCCCC---eEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTFSDMSHKFG---AVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF 229 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~---~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 229 (798)
||+|.|.+|+||||+|+.+..... +.... ....+....-......... ................+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~--~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN--KRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--TCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--ccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 799999999999999999999883 23333 2333333332222222221 12211111112234567778888887
Q ss_pred HHhcCCcEEE
Q 003753 230 RRLSNKKFAL 239 (798)
Q Consensus 230 ~~l~~~r~Ll 239 (798)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666666544
No 238
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.42 E-value=0.009 Score=56.21 Aligned_cols=40 Identities=35% Similarity=0.498 Sum_probs=31.2
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccC
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELN 195 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 195 (798)
++.|+|.+|+||||++..+..... ..-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA---TKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH---hcCCEEEEEECCcchH
Confidence 478999999999999999988872 3445678887766543
No 239
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.39 E-value=0.02 Score=57.07 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=32.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccC
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELN 195 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 195 (798)
.-.++.|.|.+|+||||+|.+++.... ..-..++|++....++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCCH
Confidence 357999999999999999999987762 2335678887655543
No 240
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.36 E-value=0.014 Score=55.74 Aligned_cols=90 Identities=21% Similarity=0.224 Sum_probs=46.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCcc-CHHHHHHHHHHHcCCCCCCCccccCCHHHHHH-HHHH
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTEL-NIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAA-EIFR 230 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~l~~ 230 (798)
++.++|++|+||||++..++..... .. ..++.++..... ...+.+...++..+.+.... ....+...... .+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~--~g-~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 77 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK--KG-KKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEE-GEGKDPVSIAKRAIEH 77 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CC-CcEEEEEcCCCChHHHHHHHHhcccCCeEEEec-CCCCCHHHHHHHHHHH
Confidence 6889999999999999999887731 22 234444433221 22333444444444332110 01233444333 3333
Q ss_pred HhcCCcEEEEEecccC
Q 003753 231 RLSNKKFALLLDDLRE 246 (798)
Q Consensus 231 ~l~~~r~LlVlDdv~~ 246 (798)
...+..-++|+|..-.
T Consensus 78 ~~~~~~d~viiDt~g~ 93 (173)
T cd03115 78 AREENFDVVIVDTAGR 93 (173)
T ss_pred HHhCCCCEEEEECccc
Confidence 3444443566776543
No 241
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.00041 Score=67.84 Aligned_cols=83 Identities=22% Similarity=0.268 Sum_probs=67.0
Q ss_pred hcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCccccCCCcccEEeCCCCCCcccccc-hhhcCCCCCc
Q 003753 537 KSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPV-GMLSSLLSLR 615 (798)
Q Consensus 537 ~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~ 615 (798)
+.+.+.+.|++.|| .++.+. -+.+++.|+.|.||-|+|+.|. .+..|++|+.|+|+.|. +.++.. .-+.++++|+
T Consensus 16 sdl~~vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 16 SDLENVKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLR 91 (388)
T ss_pred hHHHHhhhhcccCC-CccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhh
Confidence 34677888999999 888763 3567899999999999999996 58899999999999987 766653 1267888999
Q ss_pred cccccCCC
Q 003753 616 VFSWVPTR 623 (798)
Q Consensus 616 ~L~l~~~~ 623 (798)
.|.+..|.
T Consensus 92 ~LWL~ENP 99 (388)
T KOG2123|consen 92 TLWLDENP 99 (388)
T ss_pred hHhhccCC
Confidence 99998754
No 242
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.31 E-value=0.0089 Score=66.60 Aligned_cols=72 Identities=24% Similarity=0.363 Sum_probs=55.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFR 230 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 230 (798)
-+++.++|++|+||||||.-++++.- ..++=|++|++.+...+-..|...+....
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaG------YsVvEINASDeRt~~~v~~kI~~avq~~s------------------- 380 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAG------YSVVEINASDERTAPMVKEKIENAVQNHS------------------- 380 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcC------ceEEEecccccccHHHHHHHHHHHHhhcc-------------------
Confidence 57999999999999999999887651 35778899999888888887776654332
Q ss_pred Hh--cCCcEEEEEecccCc
Q 003753 231 RL--SNKKFALLLDDLRER 247 (798)
Q Consensus 231 ~l--~~~r~LlVlDdv~~~ 247 (798)
.+ .+++.-||+|.++-.
T Consensus 381 ~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 381 VLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred ccccCCCcceEEEecccCC
Confidence 12 157888999988754
No 243
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.31 E-value=0.029 Score=61.20 Aligned_cols=91 Identities=23% Similarity=0.272 Sum_probs=53.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc-cCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE-LNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 228 (798)
.+.+|.++|..|+||||+|..++.... +..+ .+..|++... ....+.++.++++++.+.-.. ....+....+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~--~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~-~~~~d~~~i~~~a 169 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK--KKGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGD-PDNKDAVEIAKEG 169 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--HcCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEec-CCccCHHHHHHHH
Confidence 467999999999999999999998773 2333 3444544322 123455666777777654211 0122333434444
Q ss_pred HHHhcCCcEEEEEeccc
Q 003753 229 FRRLSNKKFALLLDDLR 245 (798)
Q Consensus 229 ~~~l~~~r~LlVlDdv~ 245 (798)
.+.+.+. -++|+|..-
T Consensus 170 l~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 170 LEKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHHhhcC-CEEEEECCC
Confidence 4444444 568888763
No 244
>PRK14974 cell division protein FtsY; Provisional
Probab=96.30 E-value=0.034 Score=58.53 Aligned_cols=92 Identities=21% Similarity=0.250 Sum_probs=51.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccC--HHHHHHHHHHHcCCCCCCCccccCCHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELN--IEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAE 227 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 227 (798)
+..+|.++|++|+||||++..++.... ...+ .++.+.. +.+. ..+-++..+..++.+..... ...+....+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~--~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~-~g~dp~~v~~~ 213 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK--KNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHK-YGADPAAVAYD 213 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceeccc-CCCCHHHHHHH
Confidence 468999999999999999998887763 2333 3334442 2222 33345566777776542111 12233333222
Q ss_pred -HHHHhcCCcEEEEEecccC
Q 003753 228 -IFRRLSNKKFALLLDDLRE 246 (798)
Q Consensus 228 -l~~~l~~~r~LlVlDdv~~ 246 (798)
+...-....=++++|-.-.
T Consensus 214 ai~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 214 AIEHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHHHhCCCCEEEEECCCc
Confidence 2222222233888898754
No 245
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.29 E-value=0.026 Score=59.04 Aligned_cols=95 Identities=20% Similarity=0.286 Sum_probs=57.5
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhh---cCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCC--c---cccCCHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDM---SHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGD--K---WKNRDDQ 222 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~---~~~~~~~ 222 (798)
-+++-|+|.+|+|||+|+.+++-..... ...=..++||+....|+.+.+.+ +++.++...+.. . ....+.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCHH
Confidence 4789999999999999998876433110 11224789999999888888764 677776543210 0 0112333
Q ss_pred HHH---HHHHHHhcC-CcEEEEEecccC
Q 003753 223 GRA---AEIFRRLSN-KKFALLLDDLRE 246 (798)
Q Consensus 223 ~~~---~~l~~~l~~-~r~LlVlDdv~~ 246 (798)
+.. ..+...+.. +--|+|+|.+-.
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 333 233333333 444788888654
No 246
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.063 Score=59.58 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=86.1
Q ss_pred cccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHH
Q 003753 131 NIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIE 197 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 197 (798)
++=|.++-+.+|.+.+.- ...+-|..+|++|.|||++|+.+++.. .-.|=. ++..
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nFls-----vkgp---- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNFLS-----VKGP---- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCeee-----ccCH----
Confidence 344677777776655521 456789999999999999999999987 344422 2211
Q ss_pred HHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccccc-------------cc-----CCCCCC
Q 003753 198 KIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIELS-------------EA-----GVPVQN 259 (798)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~-------------~~-----~~p~~~ 259 (798)
+++.. |...++..+.....+.=+--+.++.||.++....-. .+ ++-..+
T Consensus 503 EL~sk-------------~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k 569 (693)
T KOG0730|consen 503 ELFSK-------------YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK 569 (693)
T ss_pred HHHHH-------------hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC
Confidence 11111 112222233333333333356888888876532100 00 111122
Q ss_pred CcEEEE-eCCchHHh-hhcC---CCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHH
Q 003753 260 ASKIVF-TTIFEEVC-SSMS---VDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAE 316 (798)
Q Consensus 260 gs~iiv-TTR~~~v~-~~~~---~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~ 316 (798)
+--||- |-|...+- ..+. .+..+.++.-+.+.-.++|+.++..-.....-+++++++
T Consensus 570 ~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 570 NVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred cEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 223333 33433331 1122 445677777777777889999987655444445555443
No 247
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.28 E-value=0.037 Score=66.38 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=42.5
Q ss_pred cccchhHHHHHHHHHhhc-------CC--ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCC
Q 003753 131 NIVGIESRLSEVWRYIED-------DG--VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAST 192 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-------~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 192 (798)
.++|.+..++.+...+.. .+ ..++.++|+.|+|||++|+.+++..- ..-...+.+.++.
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~---~~~~~~i~id~se 636 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF---DSDDAMVRIDMSE 636 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh---cCCCcEEEEEhHH
Confidence 688999999998888742 11 24788999999999999999987652 2223345555543
No 248
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.27 E-value=0.063 Score=55.77 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=53.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCcc-ccCCHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKW-KNRDDQGRAAEIF 229 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~l~ 229 (798)
-+++-|+|..|+||||||.++.... +..-..++||+....++.. .++++|.+.+.--. .....++....+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHH
Confidence 4699999999999999999988776 2334678999988876653 34555655432111 1233445555555
Q ss_pred HHhcC-CcEEEEEecccCc
Q 003753 230 RRLSN-KKFALLLDDLRER 247 (798)
Q Consensus 230 ~~l~~-~r~LlVlDdv~~~ 247 (798)
..++. ..-++|+|.|-..
T Consensus 125 ~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHTTSESEEEEE-CTT-
T ss_pred HHhhcccccEEEEecCccc
Confidence 55654 3458899988654
No 249
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.26 E-value=0.065 Score=57.08 Aligned_cols=42 Identities=31% Similarity=0.511 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHhhc---CCceEEEEEecCCchHHHHHHHHHHHhh
Q 003753 135 IESRLSEVWRYIED---DGVKIIGLYGVRGVGKSTLLKQLNDTFS 176 (798)
Q Consensus 135 r~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (798)
|+...+.|.+.+.+ ....+|+|.|.=|+||||+.+++.+...
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34556677777754 4678999999999999999999988873
No 250
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.23 E-value=0.034 Score=59.24 Aligned_cols=136 Identities=14% Similarity=0.130 Sum_probs=79.3
Q ss_pred cccchhHHHHHHHHHhhc-CCceE-EEEEecCCchHHHHHHHHHHHhhhhc------------------CCCCeEEEEEc
Q 003753 131 NIVGIESRLSEVWRYIED-DGVKI-IGLYGVRGVGKSTLLKQLNDTFSDMS------------------HKFGAVIMVKA 190 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~v 190 (798)
.++|-+....++..+..+ ++.+- +.++|+.|+||||+|..+.+..-... +....+..+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 467888888888888864 44444 99999999999999999988762100 01234455555
Q ss_pred CCccC---HHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc-----ccccCCCCCCCcE
Q 003753 191 STELN---IEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE-----LSEAGVPVQNASK 262 (798)
Q Consensus 191 s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-----~~~~~~p~~~gs~ 262 (798)
+.... ..+..+++.+....... .++.-++++|+++.... +.+...-....+.
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~--------------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPL--------------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCC--------------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 55444 34444444444333220 35678999999987531 2222111355667
Q ss_pred EEEeCCc-hHHhhhc-CCCcceeccC
Q 003753 263 IVFTTIF-EEVCSSM-SVDWRFKVDY 286 (798)
Q Consensus 263 iivTTR~-~~v~~~~-~~~~~~~l~~ 286 (798)
+|++|.. ..+.... .....+++.+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCC
Confidence 7777763 3332211 1233456655
No 251
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.23 E-value=0.21 Score=52.86 Aligned_cols=175 Identities=13% Similarity=0.108 Sum_probs=91.6
Q ss_pred HHHHHHHHHhhcCC-ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCC---
Q 003753 137 SRLSEVWRYIEDDG-VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPD--- 212 (798)
Q Consensus 137 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--- 212 (798)
..-+++.+.+..++ ...+.+.|+.|+||+++|..++...-- .+.-+.. .++.. ..-+.+.. +..++
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC-~~~~~~~---~Cg~C----~sC~~~~~--g~HPD~~~ 78 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMC-QQPQGHK---SCGHC----RGCQLMQA--GTHPDYYT 78 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcC-CCCCCCC---CCCCC----HHHHHHHc--CCCCCEEE
Confidence 44566777776655 457779999999999999988776521 0000000 00000 00001100 00000
Q ss_pred ---CCccccCCHHHHHHHHHHHh-----cCCcEEEEEecccCcc-----ccccc-CCCCCCCcEEEEeCCc-hHHhhh-c
Q 003753 213 ---GDKWKNRDDQGRAAEIFRRL-----SNKKFALLLDDLRERI-----ELSEA-GVPVQNASKIVFTTIF-EEVCSS-M 276 (798)
Q Consensus 213 ---~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~-----~~~~~-~~p~~~gs~iivTTR~-~~v~~~-~ 276 (798)
+........++. +.+.+.+ .+++=++|+|+++... .+.+. .-| ..++.+|++|.+ ..+... .
T Consensus 79 i~p~~~~~~I~idqi-R~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-p~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 79 LTPEKGKSSLGVDAV-REVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEP-PENTWFFLACREPARLLATLR 156 (334)
T ss_pred EecccccccCCHHHH-HHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCC-CCCeEEEEEECChhhChHHHH
Confidence 000001122222 2233333 3566789999987653 12222 223 345555555544 445433 2
Q ss_pred CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHH
Q 003753 277 SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVT 331 (798)
Q Consensus 277 ~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 331 (798)
.-.+.+.+.+++++++.+.+.+..+. + .+.+..++..++|.|..+..
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~~~-----~---~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREVTM-----S---QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHccCC-----C---HHHHHHHHHHcCCCHHHHHH
Confidence 23457899999999998888654321 1 22367889999999964433
No 252
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.22 E-value=0.013 Score=59.44 Aligned_cols=58 Identities=26% Similarity=0.366 Sum_probs=41.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhh---hcCCCCeEEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSD---MSHKFGAVIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
-.+.=|+|.+|+|||+|+.+++-.... ....=..++|++-...|+.+.+. +|++..+.
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~ 98 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGL 98 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcccc
Confidence 368999999999999999887654311 01223469999999999887775 46666543
No 253
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.22 E-value=0.023 Score=60.44 Aligned_cols=88 Identities=19% Similarity=0.266 Sum_probs=52.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc-cCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE-LNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF 229 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 229 (798)
..++.++|+.|+||||++.++...... +.....+..++.... ....+-++...+.++.+.. ...+..+....+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~-~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~----~~~~~~~l~~~l- 210 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVM-RFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH----AVKDGGDLQLAL- 210 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCeEEEEecccccccHHHHHHHHHHHcCCceE----ecCCcccHHHHH-
Confidence 469999999999999999999887621 222245566654332 2345566666777776652 122222333333
Q ss_pred HHhcCCcEEEEEeccc
Q 003753 230 RRLSNKKFALLLDDLR 245 (798)
Q Consensus 230 ~~l~~~r~LlVlDdv~ 245 (798)
..+.++ -++++|..-
T Consensus 211 ~~l~~~-DlVLIDTaG 225 (374)
T PRK14722 211 AELRNK-HMVLIDTIG 225 (374)
T ss_pred HHhcCC-CEEEEcCCC
Confidence 334454 455588874
No 254
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.22 E-value=0.023 Score=58.19 Aligned_cols=92 Identities=22% Similarity=0.299 Sum_probs=51.9
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCH--HHHHHHHHHHcCCCCCCCccccCCHHHH-H
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNI--EKIQDVIRSRLGIDPDGDKWKNRDDQGR-A 225 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~ 225 (798)
...+++.++|++|+||||++..++.... ..-..+.+++... +.. .+-+...++..+.+.-... ...+.... .
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~---~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~-~~~dp~~~~~ 144 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK---KQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQK-EGADPAAVAF 144 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCC-CCCCHHHHHH
Confidence 3468999999999999999999987773 2224566666543 222 2333445555554321000 11233332 2
Q ss_pred HHHHHHhcCCcEEEEEeccc
Q 003753 226 AEIFRRLSNKKFALLLDDLR 245 (798)
Q Consensus 226 ~~l~~~l~~~r~LlVlDdv~ 245 (798)
..+.....+..=++++|-.-
T Consensus 145 ~~l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 145 DAIQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCC
Confidence 33444444455678888764
No 255
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.071 Score=58.45 Aligned_cols=150 Identities=15% Similarity=0.251 Sum_probs=89.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF 229 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 229 (798)
...=|.+||++|+|||-||++|+|.. +-.| ++|... +++..- ...++....+..+
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkY-------------VGESErAVR~vFq 598 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKY-------------VGESERAVRQVFQ 598 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHH-------------hhhHHHHHHHHHH
Confidence 35678899999999999999999987 4444 333332 121111 2233444444555
Q ss_pred HHhcCCcEEEEEecccCcc-------c------cccc-----CCCCCCCcEEEEeCCchHHhh-----hcCCCcceeccC
Q 003753 230 RRLSNKKFALLLDDLRERI-------E------LSEA-----GVPVQNASKIVFTTIFEEVCS-----SMSVDWRFKVDY 286 (798)
Q Consensus 230 ~~l~~~r~LlVlDdv~~~~-------~------~~~~-----~~p~~~gs~iivTTR~~~v~~-----~~~~~~~~~l~~ 286 (798)
+.-..-+++|.||.++... . +..+ ++....|.-||-.|..+++.. -..-+...-++.
T Consensus 599 RAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~l 678 (802)
T KOG0733|consen 599 RARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGL 678 (802)
T ss_pred HhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecC
Confidence 5556689999999987531 0 0111 111445666776666565522 112345667777
Q ss_pred CChHHHHHHHHHhccC--cccCCChhHHHHHHHHHHHhCCCc
Q 003753 287 LPQEEAWNLFRLKVTD--EVLNSHPEIRELAETVANMCGGLP 326 (798)
Q Consensus 287 L~~~~a~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~glP 326 (798)
-+.+|-.++++..... .....+-++.++|.. .+|.|.-
T Consensus 679 Pn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 679 PNAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred CCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 7888888999888763 223344456665543 3555554
No 256
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.01 Score=65.79 Aligned_cols=73 Identities=33% Similarity=0.359 Sum_probs=50.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc--cCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE--LNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 228 (798)
..-|.|.|..|+|||+||+++++... +...-.+.+|+++.- ...+.+++.+.. .+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~---------------------vf 487 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLNN---------------------VF 487 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHHH---------------------HH
Confidence 35788999999999999999999984 566667777776653 123333332221 12
Q ss_pred HHHhcCCcEEEEEecccC
Q 003753 229 FRRLSNKKFALLLDDLRE 246 (798)
Q Consensus 229 ~~~l~~~r~LlVlDdv~~ 246 (798)
-+.+.-.+-++||||++.
T Consensus 488 se~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 488 SEALWYAPSIIVLDDLDC 505 (952)
T ss_pred HHHHhhCCcEEEEcchhh
Confidence 233455788999999864
No 257
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.18 E-value=0.039 Score=55.35 Aligned_cols=27 Identities=37% Similarity=0.545 Sum_probs=24.8
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+...+++|.|.+|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999998877
No 258
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.022 Score=65.50 Aligned_cols=152 Identities=15% Similarity=0.206 Sum_probs=89.5
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCC----CeEEEEEcCCccCHHHHHHHHHHH
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKF----GAVIMVKASTELNIEKIQDVIRSR 206 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f----~~~~wv~vs~~~~~~~~~~~i~~~ 206 (798)
.++||+++++++++.|....-.--.++|.+|+|||++|.-++.+.-. .+-. +..++. .|+..+.
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~-g~VP~~L~~~~i~s-----LD~g~Lv------ 238 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVN-GDVPESLKDKRIYS-----LDLGSLV------ 238 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhc-CCCCHHHcCCEEEE-----ecHHHHh------
Confidence 68999999999999995532223456899999999999888777621 1111 111111 0111110
Q ss_pred cCCCCCCCccccCCHHHHHHHHHHHhcC-CcEEEEEecccCcc----------cccccCCC-CCCC-cEEE-EeCCchHH
Q 003753 207 LGIDPDGDKWKNRDDQGRAAEIFRRLSN-KKFALLLDDLRERI----------ELSEAGVP-VQNA-SKIV-FTTIFEEV 272 (798)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~~~~----------~~~~~~~p-~~~g-s~ii-vTTR~~~v 272 (798)
.|.. ...+.+++.+.+.+.++. ++..|.+|.+.... |...+..| -..| -+.| .||-++.-
T Consensus 239 AGak------yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYR 312 (786)
T COG0542 239 AGAK------YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYR 312 (786)
T ss_pred cccc------ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHH
Confidence 0111 234667777777776654 58999999986532 22333455 2223 3444 45544322
Q ss_pred h------hhcCCCcceeccCCChHHHHHHHHHhc
Q 003753 273 C------SSMSVDWRFKVDYLPQEEAWNLFRLKV 300 (798)
Q Consensus 273 ~------~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 300 (798)
- ....-.+.+.++.-+.+++..+++-..
T Consensus 313 k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 313 KYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 1 111234678899999999998887543
No 259
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.15 E-value=0.03 Score=59.05 Aligned_cols=61 Identities=25% Similarity=0.308 Sum_probs=44.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhh-h--hcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCC
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFS-D--MSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDP 211 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~-~--~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 211 (798)
.-+++-|+|.+|+|||+|+.+++-... . ....-..++||+....|+.+.+.+ |++.++...
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~ 188 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDA 188 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCCh
Confidence 347888999999999999988764331 0 011235789999999999888755 667776653
No 260
>PRK09183 transposase/IS protein; Provisional
Probab=96.15 E-value=0.028 Score=57.31 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=21.5
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+.|+|++|+|||+||..+.+..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH
Confidence 567899999999999999998775
No 261
>PRK10867 signal recognition particle protein; Provisional
Probab=96.14 E-value=0.04 Score=59.98 Aligned_cols=93 Identities=16% Similarity=0.225 Sum_probs=49.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCcc-CHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTEL-NIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 228 (798)
...+|.++|.+|+||||.|..++.... ...-..+..|+..... ...+-++..++..+.+.-.. ....++.......
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~--~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~-~~~~dp~~i~~~a 175 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLK--KKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPS-GDGQDPVDIAKAA 175 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH--HhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEec-CCCCCHHHHHHHH
Confidence 468999999999999999998887762 1212234445443221 12233444556655442110 0123444444433
Q ss_pred HHHhcCCcE-EEEEeccc
Q 003753 229 FRRLSNKKF-ALLLDDLR 245 (798)
Q Consensus 229 ~~~l~~~r~-LlVlDdv~ 245 (798)
.+..+.+.| ++|+|-.-
T Consensus 176 ~~~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 176 LEEAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHHHhcCCCEEEEeCCC
Confidence 333333334 66666543
No 262
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.13 E-value=0.0064 Score=59.36 Aligned_cols=107 Identities=15% Similarity=0.155 Sum_probs=58.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHH---HHHHHcCCCCCCCccccCCHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQD---VIRSRLGIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~~~~~~l 228 (798)
.+|.|+|+.|+||||++..+..... ......+++- .++. +.... .+..+-. ...+.......+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~---~~~~~~i~t~-e~~~--E~~~~~~~~~i~q~~--------vg~~~~~~~~~i 67 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN---KNKTHHILTI-EDPI--EFVHESKRSLINQRE--------VGLDTLSFENAL 67 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh---hcCCcEEEEE-cCCc--cccccCccceeeecc--------cCCCccCHHHHH
Confidence 4789999999999999998877762 2333333332 1111 10000 0100000 011223445667
Q ss_pred HHHhcCCcEEEEEecccCcccccccCCCCCCCcEEEEeCCchHH
Q 003753 229 FRRLSNKKFALLLDDLRERIELSEAGVPVQNASKIVFTTIFEEV 272 (798)
Q Consensus 229 ~~~l~~~r~LlVlDdv~~~~~~~~~~~p~~~gs~iivTTR~~~v 272 (798)
+..++...=.+++|++.+.+.+.....-...|-.++.|+-..++
T Consensus 68 ~~aLr~~pd~ii~gEird~e~~~~~l~~a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 68 KAALRQDPDVILVGEMRDLETIRLALTAAETGHLVMSTLHTNSA 111 (198)
T ss_pred HHHhcCCcCEEEEcCCCCHHHHHHHHHHHHcCCEEEEEecCCcH
Confidence 77888778899999998765433321112345556666654443
No 263
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.13 E-value=0.033 Score=57.58 Aligned_cols=88 Identities=26% Similarity=0.297 Sum_probs=50.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCcc-CHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTEL-NIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 228 (798)
..++++|+|++|+||||++..++..... +..-..+..|+..... ...+.+....+.++.+.. ...+...+...+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~-~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~----~~~~~~~l~~~l 267 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL-EHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK----VARDPKELRKAL 267 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-HcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee----ccCCHHHHHHHH
Confidence 3579999999999999999999887721 2112345666654322 123334444555565542 223444444433
Q ss_pred HHHhcCCcEEEEEecc
Q 003753 229 FRRLSNKKFALLLDDL 244 (798)
Q Consensus 229 ~~~l~~~r~LlVlDdv 244 (798)
. .+.+ .=++++|..
T Consensus 268 ~-~~~~-~d~vliDt~ 281 (282)
T TIGR03499 268 D-RLRD-KDLILIDTA 281 (282)
T ss_pred H-HccC-CCEEEEeCC
Confidence 3 3333 447777753
No 264
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.11 E-value=0.0062 Score=67.12 Aligned_cols=46 Identities=26% Similarity=0.507 Sum_probs=40.5
Q ss_pred CcccchhHHHHHHHHHhh------cCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 130 NNIVGIESRLSEVWRYIE------DDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.+++|.++.+++|++.|. +...+++.++|++|+||||||+.+++-.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 368999999999999992 2456899999999999999999998876
No 265
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.10 E-value=0.098 Score=60.81 Aligned_cols=148 Identities=13% Similarity=0.150 Sum_probs=81.9
Q ss_pred cccchhHHHHHHHHHh---hc---------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHH
Q 003753 131 NIVGIESRLSEVWRYI---ED---------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEK 198 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 198 (798)
++.|.+..++++.+.+ .+ .-.+-|.++|++|+|||++|+.+++.. .-.| +.++.+.
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~~------ 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSD------ 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehHH------
Confidence 4667776666655544 22 113459999999999999999998876 2222 2222221
Q ss_pred HHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc----------------cccc-----CCCC
Q 003753 199 IQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE----------------LSEA-----GVPV 257 (798)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~----------------~~~~-----~~p~ 257 (798)
+.. .. ...........+...-...+.+|++|+++.... +..+ ++..
T Consensus 221 ~~~----~~---------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~ 287 (644)
T PRK10733 221 FVE----MF---------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 287 (644)
T ss_pred hHH----hh---------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC
Confidence 111 00 011122233333333445788999999876410 0111 1112
Q ss_pred CCCcEEEEeCCchHHhhh-----cCCCcceeccCCChHHHHHHHHHhccCc
Q 003753 258 QNASKIVFTTIFEEVCSS-----MSVDWRFKVDYLPQEEAWNLFRLKVTDE 303 (798)
Q Consensus 258 ~~gs~iivTTR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~~~~~ 303 (798)
..+.-+|.||...+.... -.....+.++..+.++-.++++.+....
T Consensus 288 ~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~ 338 (644)
T PRK10733 288 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV 338 (644)
T ss_pred CCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC
Confidence 344455667776654221 1134567788888888888888877543
No 266
>PRK04040 adenylate kinase; Provisional
Probab=96.09 E-value=0.017 Score=55.76 Aligned_cols=48 Identities=25% Similarity=0.447 Sum_probs=33.5
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCC
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGID 210 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 210 (798)
..+|+|+|++|+||||+++.+..... ..+.. + +..++..+++...+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~---~~~~~---~------~~g~~~~~~a~~~g~~ 49 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK---EDYKI---V------NFGDVMLEVAKEEGLV 49 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc---cCCeE---E------ecchHHHHHHHHcCCC
Confidence 36899999999999999999988762 12322 2 2344666666666653
No 267
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.09 E-value=0.013 Score=69.86 Aligned_cols=46 Identities=22% Similarity=0.371 Sum_probs=37.9
Q ss_pred CcccchhHHHHHHHHHhhc---------CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 130 NNIVGIESRLSEVWRYIED---------DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..++|.+..++.+.+.+.. ....++.++|+.|+|||.+|+.++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999888832 123578999999999999999987765
No 268
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.07 E-value=0.036 Score=52.75 Aligned_cols=123 Identities=19% Similarity=0.221 Sum_probs=64.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhc--C---CCC--eEEEEEcCCccCHHHHHHHHHHHcCCCCC--CCccccCC
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMS--H---KFG--AVIMVKASTELNIEKIQDVIRSRLGIDPD--GDKWKNRD 220 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~---~f~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ 220 (798)
.-.+++|+|+.|+|||||.+.+..+.-.+. . .|. .+.|+ .+ .+.++.++.... .......+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 346999999999999999998864321110 0 110 12332 11 456666665421 11112222
Q ss_pred HHHH-HHHHHHHhcCC--cEEEEEecccCccccc------ccCCC-CCCCcEEEEeCCchHHhhhcCCCcceec
Q 003753 221 DQGR-AAEIFRRLSNK--KFALLLDDLRERIELS------EAGVP-VQNASKIVFTTIFEEVCSSMSVDWRFKV 284 (798)
Q Consensus 221 ~~~~-~~~l~~~l~~~--r~LlVlDdv~~~~~~~------~~~~p-~~~gs~iivTTR~~~v~~~~~~~~~~~l 284 (798)
..+. .-.+.+.+-.+ +=++++|+.-...+.. +.... ...|..||++|.+.+.... .+.++.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 2222 22344555566 7788889865442211 11111 2257778888888776542 3444444
No 269
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.05 E-value=0.043 Score=57.97 Aligned_cols=58 Identities=22% Similarity=0.376 Sum_probs=42.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcC----CCCeEEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSH----KFGAVIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
...++-|+|.+|+|||+++.+++..... .. .=..++||+....++...+.+ +++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~-~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQL-PEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhcc-ccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 3579999999999999999998766411 11 114799999998888777654 4455554
No 270
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.00 E-value=0.039 Score=57.91 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=41.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhh-h-cC-CCCeEEEEEcCCccCHHHHHHHHHHHcCCC
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSD-M-SH-KFGAVIMVKASTELNIEKIQDVIRSRLGID 210 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~-~~-~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 210 (798)
...++.|+|.+|+|||||+..++..... . .. .-..++|++....++... +.++++.++..
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~ 157 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLN 157 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCC
Confidence 3579999999999999999988753210 0 11 123679999888777776 44556666554
No 271
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.99 E-value=0.029 Score=55.89 Aligned_cols=124 Identities=15% Similarity=0.102 Sum_probs=72.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCC-----ccCHHHHHHHHHHHcCCCCCC--CccccCCHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAST-----ELNIEKIQDVIRSRLGIDPDG--DKWKNRDDQ 222 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~ 222 (798)
.-.+++|+|.+|+||||+++.+..-. ..-.+.+++.-.+ .....+-..++++..+.+.+. .....-+-.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~----~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE----EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc----CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 44699999999999999999998766 2223333333211 122344455666666644320 000112222
Q ss_pred HHH-HHHHHHhcCCcEEEEEecccCcccc------cccCCC--CCCCcEEEEeCCchHHhhhcC
Q 003753 223 GRA-AEIFRRLSNKKFALLLDDLRERIEL------SEAGVP--VQNASKIVFTTIFEEVCSSMS 277 (798)
Q Consensus 223 ~~~-~~l~~~l~~~r~LlVlDdv~~~~~~------~~~~~p--~~~gs~iivTTR~~~v~~~~~ 277 (798)
+++ -.+.+.|.-++-++|.|..-+..|. ..+... ...|-..++.|-+-.++..+.
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 333 3467888899999999986554321 111111 345667778888877777654
No 272
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.99 E-value=0.023 Score=68.33 Aligned_cols=60 Identities=23% Similarity=0.327 Sum_probs=44.4
Q ss_pred CcccchhHHHHHHHHHhhcC---------CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCC
Q 003753 130 NNIVGIESRLSEVWRYIEDD---------GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAST 192 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 192 (798)
..++|.+..++.+.+.+... ...++.++|+.|+|||++|+.+.... ...-...+.++++.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l---~~~~~~~i~~d~s~ 633 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL---FDDEDAMVRIDMSE 633 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---cCCCCcEEEEechh
Confidence 36899999999999988431 13578899999999999999998765 22223445555554
No 273
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.99 E-value=0.065 Score=56.78 Aligned_cols=90 Identities=20% Similarity=0.234 Sum_probs=51.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCcc-CHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTEL-NIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 228 (798)
..++|+++|.+|+||||++..++.... ... ..+..++..... ...+-++..++.++.+.. ...+...+...+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~--~~G-kkVglI~aDt~RiaAvEQLk~yae~lgipv~----v~~d~~~L~~aL 312 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH--GKK-KTVGFITTDHSRIGTVQQLQDYVKTIGFEVI----AVRDEAAMTRAL 312 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH--HcC-CcEEEEecCCcchHHHHHHHHHhhhcCCcEE----ecCCHHHHHHHH
Confidence 347999999999999999999988763 222 234455543322 223333444455555431 234555555544
Q ss_pred HHHhcC-CcEEEEEecccC
Q 003753 229 FRRLSN-KKFALLLDDLRE 246 (798)
Q Consensus 229 ~~~l~~-~r~LlVlDdv~~ 246 (798)
...-.. +.=++++|-.-.
T Consensus 313 ~~lk~~~~~DvVLIDTaGR 331 (436)
T PRK11889 313 TYFKEEARVDYILIDTAGK 331 (436)
T ss_pred HHHHhccCCCEEEEeCccc
Confidence 443222 334777787643
No 274
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.97 E-value=0.055 Score=59.65 Aligned_cols=89 Identities=22% Similarity=0.273 Sum_probs=49.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCcc-CHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTEL-NIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 228 (798)
...+|+|+|.+|+||||++.++...... +.....+..++..... ...+.+......++.... ...+...+...+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~-~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~----~a~d~~~L~~aL 423 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAA-QHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH----EADSAESLLDLL 423 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCceEEEecccccccHHHHHHHhhcccCceeE----ecCcHHHHHHHH
Confidence 3479999999999999999998877621 2223445555543211 122333333444444331 122333444333
Q ss_pred HHHhcCCcEEEEEeccc
Q 003753 229 FRRLSNKKFALLLDDLR 245 (798)
Q Consensus 229 ~~~l~~~r~LlVlDdv~ 245 (798)
. .+. +.=+|++|..-
T Consensus 424 ~-~l~-~~DLVLIDTaG 438 (559)
T PRK12727 424 E-RLR-DYKLVLIDTAG 438 (559)
T ss_pred H-Hhc-cCCEEEecCCC
Confidence 3 333 34578888764
No 275
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.97 E-value=0.015 Score=54.81 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=60.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc--cCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE--LNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAE 227 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 227 (798)
.-.+++|.|..|.|||||.+.++... ......+++.-..- .+..+. ....++... +-..-+...-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~-----qLS~G~~qrl~ 92 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDA---RRAGIAMVY-----QLSVGERQMVE 92 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHH---HhcCeEEEE-----ecCHHHHHHHH
Confidence 34699999999999999999998765 23344455432111 111111 111122111 11111222334
Q ss_pred HHHHhcCCcEEEEEecccCccccc------ccCCC-CCCCcEEEEeCCchHHhh
Q 003753 228 IFRRLSNKKFALLLDDLRERIELS------EAGVP-VQNASKIVFTTIFEEVCS 274 (798)
Q Consensus 228 l~~~l~~~r~LlVlDdv~~~~~~~------~~~~p-~~~gs~iivTTR~~~v~~ 274 (798)
+.+.+-.++-++++|+.-...|.. +.... ...|..||++|.+.....
T Consensus 93 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 93 IARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 556666778888899875443211 11111 234677888888766443
No 276
>PRK06547 hypothetical protein; Provisional
Probab=95.95 E-value=0.011 Score=56.11 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=28.0
Q ss_pred HHHHhhcCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 142 VWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 142 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+...+......+|+|.|.+|+||||+|+.+....
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444555778899999999999999999998765
No 277
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.94 E-value=0.017 Score=55.91 Aligned_cols=79 Identities=22% Similarity=0.175 Sum_probs=45.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF 229 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 229 (798)
.+.+|+|.|.+|+||||+|+.++..+ ....-.+ ++-..-+ ...-.....+...... +.....+.+-..+.|.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~~~~--I~~D~YY-k~~~~~~~~~~~~~n~--d~p~A~D~dLl~~~L~ 78 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEKVVV--ISLDDYY-KDQSHLPFEERNKINY--DHPEAFDLDLLIEHLK 78 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCcceE--eeccccc-cchhhcCHhhcCCcCc--cChhhhcHHHHHHHHH
Confidence 45799999999999999999999988 2221111 1111110 1111111111112111 2224567778888888
Q ss_pred HHhcCCc
Q 003753 230 RRLSNKK 236 (798)
Q Consensus 230 ~~l~~~r 236 (798)
..+++++
T Consensus 79 ~L~~g~~ 85 (218)
T COG0572 79 DLKQGKP 85 (218)
T ss_pred HHHcCCc
Confidence 8888887
No 278
>PRK13695 putative NTPase; Provisional
Probab=95.94 E-value=0.016 Score=55.40 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=25.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEE
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMV 188 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 188 (798)
.++|+|.+|+|||||++.+++.... ..+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~--~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE--EGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEE
Confidence 4789999999999999999887632 234444454
No 279
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.93 E-value=0.04 Score=59.96 Aligned_cols=93 Identities=16% Similarity=0.185 Sum_probs=52.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCcc-CHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTEL-NIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 228 (798)
.+.++.++|.+|+||||.|..++..... +.. ..+.-|++.... ...+-+....++.+.+.-.. ....++.+.....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~-~~g-~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~-~~~~~P~~i~~~a 174 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKK-KQG-KKVLLVACDLYRPAAIEQLKVLGQQVGVPVFAL-GKGQSPVEIARRA 174 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH-hCC-CeEEEEeccccchHHHHHHHHHHHhcCCceEec-CCCCCHHHHHHHH
Confidence 4679999999999999999988877521 122 234444443221 22334445566666553211 1223444554444
Q ss_pred HHHhcCCcE-EEEEeccc
Q 003753 229 FRRLSNKKF-ALLLDDLR 245 (798)
Q Consensus 229 ~~~l~~~r~-LlVlDdv~ 245 (798)
.+....+.| ++|+|-.-
T Consensus 175 l~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 175 LEYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHHhcCCCEEEEeCCC
Confidence 444444445 77777654
No 280
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.93 E-value=0.01 Score=53.67 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=26.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeE
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAV 185 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~ 185 (798)
..-|+|.|++|+||||+++.+.+... ...|...
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~--~~g~kvg 37 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR--EKGYKVG 37 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH--hcCceee
Confidence 35689999999999999999998873 3446543
No 281
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.92 E-value=0.038 Score=56.00 Aligned_cols=92 Identities=17% Similarity=0.234 Sum_probs=53.9
Q ss_pred chhHHHHHHHHHhhc-CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCC
Q 003753 134 GIESRLSEVWRYIED-DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPD 212 (798)
Q Consensus 134 Gr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 212 (798)
++...+..+.+.... +...-+.++|.+|+|||.||.++.+... ..--.+.+++ ..++..++.......
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~---~~g~sv~f~~------~~el~~~Lk~~~~~~-- 155 (254)
T COG1484 87 IDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL---KAGISVLFIT------APDLLSKLKAAFDEG-- 155 (254)
T ss_pred hhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhcC--
Confidence 344444444433311 2567899999999999999999999983 2223455553 455666665554321
Q ss_pred CCccccCCHHHHHHHHHHHhcCCcEEEEEecccCc
Q 003753 213 GDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRER 247 (798)
Q Consensus 213 ~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~ 247 (798)
.....+.+.+. +-=||||||+-..
T Consensus 156 ----------~~~~~l~~~l~-~~dlLIiDDlG~~ 179 (254)
T COG1484 156 ----------RLEEKLLRELK-KVDLLIIDDIGYE 179 (254)
T ss_pred ----------chHHHHHHHhh-cCCEEEEecccCc
Confidence 11122222222 3448999998653
No 282
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.1 Score=59.09 Aligned_cols=148 Identities=20% Similarity=0.221 Sum_probs=86.5
Q ss_pred cccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHH
Q 003753 131 NIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIE 197 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 197 (798)
++.|.+..++.+.+.+.- ...+.+-++|++|.|||.||+++++.. ...|-.+.+-
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~--------- 310 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGS--------- 310 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCH---------
Confidence 455666666665554411 345689999999999999999999965 3444333221
Q ss_pred HHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccccc---------cc---------CCCCCC
Q 003753 198 KIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIELS---------EA---------GVPVQN 259 (798)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~---------~~---------~~p~~~ 259 (798)
.+.. .|-...+...........+..+..|.+|+++...... ++ +.....
T Consensus 311 ----~l~s---------k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~ 377 (494)
T COG0464 311 ----ELLS---------KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAE 377 (494)
T ss_pred ----HHhc---------cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccC
Confidence 1110 1122233333344444556789999999987542111 11 111233
Q ss_pred CcEEEEeCCchHHhhh-----cCCCcceeccCCChHHHHHHHHHhccCc
Q 003753 260 ASKIVFTTIFEEVCSS-----MSVDWRFKVDYLPQEEAWNLFRLKVTDE 303 (798)
Q Consensus 260 gs~iivTTR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~~~~~ 303 (798)
+..||-||-....... ..-...+.++.-+.++..+.|+.+....
T Consensus 378 ~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~ 426 (494)
T COG0464 378 GVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK 426 (494)
T ss_pred ceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc
Confidence 3344555544433221 1234578888999999999999998743
No 283
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.019 Score=61.57 Aligned_cols=45 Identities=24% Similarity=0.451 Sum_probs=35.3
Q ss_pred cccchhH---HHHHHHHHhhcC--------C-ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIES---RLSEVWRYIEDD--------G-VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~---~~~~l~~~L~~~--------~-~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
++-|-|+ ++++|+++|.++ . ++=|.++|++|.|||-||++++...
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 4567664 566778888662 1 5678899999999999999998876
No 284
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.88 E-value=0.042 Score=55.87 Aligned_cols=92 Identities=20% Similarity=0.193 Sum_probs=58.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHc---CCCCCCCccccCCHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRL---GIDPDGDKWKNRDDQGRAA 226 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l---~~~~~~~~~~~~~~~~~~~ 226 (798)
.-+++=|+|+.|+||||+|.+++-.. +..-..++|++....++.+.+.+--...+ ..... .......+.+.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~---~~~e~q~~i~~ 132 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQP---DTGEQQLEIAE 132 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecC---CCHHHHHHHHH
Confidence 35789999999999999999987766 34445899999999998776654332212 11110 01122233334
Q ss_pred HHHHHhcCCcEEEEEecccCc
Q 003753 227 EIFRRLSNKKFALLLDDLRER 247 (798)
Q Consensus 227 ~l~~~l~~~r~LlVlDdv~~~ 247 (798)
.+.+....+--|+|+|.+-..
T Consensus 133 ~~~~~~~~~i~LvVVDSvaa~ 153 (279)
T COG0468 133 KLARSGAEKIDLLVVDSVAAL 153 (279)
T ss_pred HHHHhccCCCCEEEEecCccc
Confidence 444444445669999987643
No 285
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.88 E-value=0.41 Score=50.66 Aligned_cols=87 Identities=15% Similarity=0.189 Sum_probs=52.1
Q ss_pred CCcEEEEEecccCcc-----ccccc-CCCCCCCcE-EEEeCCchHHhhhc-CCCcceeccCCChHHHHHHHHHhccCccc
Q 003753 234 NKKFALLLDDLRERI-----ELSEA-GVPVQNASK-IVFTTIFEEVCSSM-SVDWRFKVDYLPQEEAWNLFRLKVTDEVL 305 (798)
Q Consensus 234 ~~r~LlVlDdv~~~~-----~~~~~-~~p~~~gs~-iivTTR~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~ 305 (798)
+++=++|+|+++... .+.+. --| .+++. |++|++-..+.... .-...+.+.+++.++..+.+.+. +.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEP-p~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~--- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEP-PPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV--- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCC-CcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC---
Confidence 455588899988653 12221 223 34454 45555545554332 23467899999999999888765 11
Q ss_pred CCChhHHHHHHHHHHHhCCCchHHHHH
Q 003753 306 NSHPEIRELAETVANMCGGLPLALVTI 332 (798)
Q Consensus 306 ~~~~~~~~~~~~i~~~c~glPLai~~~ 332 (798)
++ ...++..++|.|..+..+
T Consensus 206 --~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 --AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 223577889999765544
No 286
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.88 E-value=0.083 Score=55.79 Aligned_cols=90 Identities=19% Similarity=0.146 Sum_probs=56.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccC-HHHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELN-IEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 228 (798)
+.+++.++|+.|+||||++..++.... .. -..+.+++...... ..+-++..++.++.+.. ...+..++...+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~--~~-g~~V~lItaDtyR~gAveQLk~yae~lgvpv~----~~~dp~dL~~al 277 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL--KQ-NRTVGFITTDTFRSGAVEQFQGYADKLDVELI----VATSPAELEEAV 277 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--Hc-CCeEEEEeCCccCccHHHHHHHHhhcCCCCEE----ecCCHHHHHHHH
Confidence 467999999999999999999987662 12 23566676654332 34455566666665541 234555554444
Q ss_pred HHHh-cCCcEEEEEecccC
Q 003753 229 FRRL-SNKKFALLLDDLRE 246 (798)
Q Consensus 229 ~~~l-~~~r~LlVlDdv~~ 246 (798)
...- .+..=++++|-.-.
T Consensus 278 ~~l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 278 QYMTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHHHhcCCCCEEEEECCCC
Confidence 4332 13456778887644
No 287
>PTZ00035 Rad51 protein; Provisional
Probab=95.87 E-value=0.057 Score=57.21 Aligned_cols=60 Identities=27% Similarity=0.323 Sum_probs=41.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhh---hcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCC
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSD---MSHKFGAVIMVKASTELNIEKIQDVIRSRLGID 210 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 210 (798)
.-.++.|+|.+|+|||||+..++-.... ....-..++|++....++.+.+ .++++.++..
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~ 179 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLD 179 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCC
Confidence 3579999999999999999988654410 0112346779998877777764 4556666544
No 288
>PRK04132 replication factor C small subunit; Provisional
Probab=95.86 E-value=0.14 Score=60.38 Aligned_cols=150 Identities=14% Similarity=0.138 Sum_probs=89.1
Q ss_pred cCCchHHHHHHHHHHHhhhhcCCC-CeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcE
Q 003753 159 VRGVGKSTLLKQLNDTFSDMSHKF-GAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKF 237 (798)
Q Consensus 159 ~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~ 237 (798)
+.++||||+|..++++.- .+.+ ..++-+++|+...+..+...|-+.....+ . -..+.-
T Consensus 574 Ph~lGKTT~A~ala~~l~--g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~-----~--------------~~~~~K 632 (846)
T PRK04132 574 PTVLHNTTAALALARELF--GENWRHNFLELNASDERGINVIREKVKEFARTKP-----I--------------GGASFK 632 (846)
T ss_pred CCcccHHHHHHHHHHhhh--cccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC-----c--------------CCCCCE
Confidence 778999999999988851 1223 24677888876666544433322221111 0 012467
Q ss_pred EEEEecccCcc--c---ccccCCCCCCCcEEEEeCCc-hHHhhhc-CCCcceeccCCChHHHHHHHHHhccCcccCCChh
Q 003753 238 ALLLDDLRERI--E---LSEAGVPVQNASKIVFTTIF-EEVCSSM-SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPE 310 (798)
Q Consensus 238 LlVlDdv~~~~--~---~~~~~~p~~~gs~iivTTR~-~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~ 310 (798)
++|+|+++... . +.+..-.....+++|++|.+ ..+.... .-...+.+.++++++-...+...+.......+
T Consensus 633 VvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~-- 710 (846)
T PRK04132 633 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT-- 710 (846)
T ss_pred EEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC--
Confidence 99999998764 1 11111112345566655544 3333222 23467899999999988888776643332222
Q ss_pred HHHHHHHHHHHhCCCchHHHHH
Q 003753 311 IRELAETVANMCGGLPLALVTI 332 (798)
Q Consensus 311 ~~~~~~~i~~~c~glPLai~~~ 332 (798)
.+....|++.++|.+-.+..+
T Consensus 711 -~e~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 711 -EEGLQAILYIAEGDMRRAINI 731 (846)
T ss_pred -HHHHHHHHHHcCCCHHHHHHH
Confidence 346789999999988544433
No 289
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.84 E-value=0.0046 Score=36.07 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=10.5
Q ss_pred eeEEeCCCCccccccccccc
Q 003753 542 LRVLDSSQNAKLSKLHVGEG 561 (798)
Q Consensus 542 Lr~L~L~~~~~i~~lp~~i~ 561 (798)
|++|||++| .++.+|++++
T Consensus 2 L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSS-EESEEGTTTT
T ss_pred ccEEECCCC-cCEeCChhhc
Confidence 555555555 5555555444
No 290
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.82 E-value=0.044 Score=55.86 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=68.1
Q ss_pred HHHHHHHhh-cCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCc--
Q 003753 139 LSEVWRYIE-DDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDK-- 215 (798)
Q Consensus 139 ~~~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-- 215 (798)
.+.++..|. .+...-++|+|..|+|||||.+.+..... .....+++.- +.....+-..+|+.....-++..-
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q~~~~~ 172 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRG-KKVGIVDERSEIAGCVNGVPQHDVGI 172 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECC-EEeecchhHHHHHHHhcccccccccc
Confidence 344444443 34567899999999999999999987762 2233344321 111111111333333222111000
Q ss_pred -cccCCHHHHHHHHHHHhc-CCcEEEEEecccCcccccccCCCCCCCcEEEEeCCchHHh
Q 003753 216 -WKNRDDQGRAAEIFRRLS-NKKFALLLDDLRERIELSEAGVPVQNASKIVFTTIFEEVC 273 (798)
Q Consensus 216 -~~~~~~~~~~~~l~~~l~-~~r~LlVlDdv~~~~~~~~~~~p~~~gs~iivTTR~~~v~ 273 (798)
.+..+.......+...+. ..+-++++|.+...+.+..+..-...|..+|+||-+..+.
T Consensus 173 r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 173 RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGRDVE 232 (270)
T ss_pred cccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEechhHHH
Confidence 011111112333444443 5788999999876654443311123578899999876553
No 291
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.81 E-value=0.0094 Score=56.89 Aligned_cols=75 Identities=21% Similarity=0.361 Sum_probs=43.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF 229 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 229 (798)
...-+.++|..|+|||.||..+.+... ...+ .+.|++ ..+++..+-.. . ........ .
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~--~~g~-~v~f~~------~~~L~~~l~~~----~-----~~~~~~~~----~ 103 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI--RKGY-SVLFIT------ASDLLDELKQS----R-----SDGSYEEL----L 103 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH--HTT---EEEEE------HHHHHHHHHCC----H-----CCTTHCHH----H
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc--cCCc-ceeEee------cCceecccccc----c-----cccchhhh----c
Confidence 346799999999999999999998873 2333 355664 44555555321 1 11122222 2
Q ss_pred HHhcCCcEEEEEecccCc
Q 003753 230 RRLSNKKFALLLDDLRER 247 (798)
Q Consensus 230 ~~l~~~r~LlVlDdv~~~ 247 (798)
+.+. +-=||||||+-..
T Consensus 104 ~~l~-~~dlLilDDlG~~ 120 (178)
T PF01695_consen 104 KRLK-RVDLLILDDLGYE 120 (178)
T ss_dssp HHHH-TSSCEEEETCTSS
T ss_pred Cccc-cccEeccccccee
Confidence 3333 3457889998654
No 292
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.80 E-value=0.05 Score=54.82 Aligned_cols=49 Identities=18% Similarity=0.089 Sum_probs=35.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVI 203 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 203 (798)
.-.++.|.|.+|+|||++|.++..... ..-..++|++... +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHHH
Confidence 457999999999999999998766541 2346778887655 455555553
No 293
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.79 E-value=0.032 Score=53.16 Aligned_cols=118 Identities=19% Similarity=0.253 Sum_probs=62.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCc-ccc--------CC
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDK-WKN--------RD 220 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~--------~~ 220 (798)
.-.+++|+|..|.|||||++.++... ......+++.-..-.+.. ..+...++.-.+... ... -+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL----KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcC
Confidence 34689999999999999999998765 223444554221110100 112222222111100 011 11
Q ss_pred HHHH-HHHHHHHhcCCcEEEEEecccCccccc------ccCCC-CCCCcEEEEeCCchHHhh
Q 003753 221 DQGR-AAEIFRRLSNKKFALLLDDLRERIELS------EAGVP-VQNASKIVFTTIFEEVCS 274 (798)
Q Consensus 221 ~~~~-~~~l~~~l~~~r~LlVlDdv~~~~~~~------~~~~p-~~~gs~iivTTR~~~v~~ 274 (798)
..+. .-.+.+.+..++=++++|+.-...|.. +.... ...|..||++|.+.....
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 1222 224566777888899999975543221 11111 223677888888876554
No 294
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.79 E-value=0.085 Score=56.71 Aligned_cols=91 Identities=19% Similarity=0.190 Sum_probs=55.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhc-CCCCeEEEEEcCCcc-CHHHHHHHHHHHcCCCCCCCccccCCHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMS-HKFGAVIMVKASTEL-NIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAE 227 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 227 (798)
..++|.++|..|+||||.+..++....... ..-..+..+++.... ....-++..++.++.+.. ...+.......
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~----~~~~~~~l~~~ 248 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK----AIESFKDLKEE 248 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE----eeCcHHHHHHH
Confidence 357999999999999999999887763211 122345556655422 233336666666776542 23344444444
Q ss_pred HHHHhcCCcEEEEEecccC
Q 003753 228 IFRRLSNKKFALLLDDLRE 246 (798)
Q Consensus 228 l~~~l~~~r~LlVlDdv~~ 246 (798)
+.+. .+.-++++|....
T Consensus 249 L~~~--~~~DlVLIDTaGr 265 (388)
T PRK12723 249 ITQS--KDFDLVLVDTIGK 265 (388)
T ss_pred HHHh--CCCCEEEEcCCCC
Confidence 4442 3456888898753
No 295
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.79 E-value=0.05 Score=54.77 Aligned_cols=90 Identities=17% Similarity=0.190 Sum_probs=55.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCC---------------
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGD--------------- 214 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--------------- 214 (798)
.-+++.|+|.+|+|||++|.++..... ..=..++|++..+. ..++.+.+ .+++....+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 357999999999999999999866541 23467888888654 44555543 3444322110
Q ss_pred -ccccCCHHHHHHHHHHHhcC-CcEEEEEeccc
Q 003753 215 -KWKNRDDQGRAAEIFRRLSN-KKFALLLDDLR 245 (798)
Q Consensus 215 -~~~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~ 245 (798)
.+...+.+.....+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 01112335566666666654 45578888765
No 296
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.77 E-value=0.044 Score=53.63 Aligned_cols=123 Identities=20% Similarity=0.206 Sum_probs=69.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEc----------------------CCcc-------------
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKA----------------------STEL------------- 194 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v----------------------s~~~------------- 194 (798)
.-..++|+|++|+|||||...+..-... -...+++.. -+.+
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~p----t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~ 105 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKP----TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE 105 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC----CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHH
Confidence 3469999999999999999887653311 112222221 1111
Q ss_pred -----------CHHHHHHHHHHHcCCCCCCC-c-cccC-CHHHHHHHHHHHhcCCcEEEEEeccc----Cc--ccccccC
Q 003753 195 -----------NIEKIQDVIRSRLGIDPDGD-K-WKNR-DDQGRAAEIFRRLSNKKFALLLDDLR----ER--IELSEAG 254 (798)
Q Consensus 195 -----------~~~~~~~~i~~~l~~~~~~~-~-~~~~-~~~~~~~~l~~~l~~~r~LlVlDdv~----~~--~~~~~~~ 254 (798)
...+....+++.+++..... . .... .-++..-.+.+.|-.++-+|+-|+-- .. ..+.++.
T Consensus 106 lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll 185 (226)
T COG1136 106 LPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELL 185 (226)
T ss_pred hHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHH
Confidence 12334455556656542211 0 1112 22233335677888888899999742 22 2222222
Q ss_pred CC--CCCCcEEEEeCCchHHhhhc
Q 003753 255 VP--VQNASKIVFTTIFEEVCSSM 276 (798)
Q Consensus 255 ~p--~~~gs~iivTTR~~~v~~~~ 276 (798)
.. ...|..||+.|-+..++..+
T Consensus 186 ~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 186 RELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHhcCCEEEEEcCCHHHHHhC
Confidence 22 34588999999999998854
No 297
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.77 E-value=0.083 Score=49.41 Aligned_cols=124 Identities=20% Similarity=0.199 Sum_probs=69.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEE---cC------------------Cc---------------
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVK---AS------------------TE--------------- 193 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---vs------------------~~--------------- 193 (798)
.-..+.++|++|.|||||.+.+|..... -...+|+. ++ ++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p----t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP----TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC----CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 3468999999999999999999988632 23344443 00 11
Q ss_pred ------cCHHHHHH---HHHHHcCCCCCCCc--cccCCHHHHHHHHHHHhcCCcEEEEEec----ccCcccccc--cCCC
Q 003753 194 ------LNIEKIQD---VIRSRLGIDPDGDK--WKNRDDQGRAAEIFRRLSNKKFALLLDD----LRERIELSE--AGVP 256 (798)
Q Consensus 194 ------~~~~~~~~---~i~~~l~~~~~~~~--~~~~~~~~~~~~l~~~l~~~r~LlVlDd----v~~~~~~~~--~~~p 256 (798)
....++.+ +.++..++...... ..-..-++..-.|.+.+-+++-+|+-|. ++....|+- +...
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfee 182 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE 182 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence 01122222 22233333221100 0112222333346677778888888885 333322222 1111
Q ss_pred -CCCCcEEEEeCCchHHhhhcC
Q 003753 257 -VQNASKIVFTTIFEEVCSSMS 277 (798)
Q Consensus 257 -~~~gs~iivTTR~~~v~~~~~ 277 (798)
+..|+.|+++|-+.++...+.
T Consensus 183 inr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 183 INRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HhhcCcEEEEEeccHHHHHhcc
Confidence 678999999999999877663
No 298
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.77 E-value=0.051 Score=57.41 Aligned_cols=60 Identities=20% Similarity=0.271 Sum_probs=43.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhh--hc-CCCCeEEEEEcCCccCHHHHHHHHHHHcCCCC
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSD--MS-HKFGAVIMVKASTELNIEKIQDVIRSRLGIDP 211 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~-~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 211 (798)
..++-|+|.+|+|||+||..++-.... .. ..-..++|++....|+.+.+. +|++.++...
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~ 185 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNG 185 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCCh
Confidence 578899999999999999887754310 01 112379999999999887764 5677776543
No 299
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.75 E-value=0.062 Score=51.51 Aligned_cols=126 Identities=17% Similarity=0.166 Sum_probs=64.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCcc----------ccC
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKW----------KNR 219 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~----------~~~ 219 (798)
.-.+++|.|..|+|||||++.+..... .-...+++.-. ++......+...++...+.... ...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK----PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC----CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 346899999999999999999987652 12233333211 1111111222222221111000 111
Q ss_pred CHHH-HHHHHHHHhcCCcEEEEEecccCccccc------ccCCCCCCCcEEEEeCCchHHhhhcCCCcceec
Q 003753 220 DDQG-RAAEIFRRLSNKKFALLLDDLRERIELS------EAGVPVQNASKIVFTTIFEEVCSSMSVDWRFKV 284 (798)
Q Consensus 220 ~~~~-~~~~l~~~l~~~r~LlVlDdv~~~~~~~------~~~~p~~~gs~iivTTR~~~v~~~~~~~~~~~l 284 (798)
+..+ ..-.+.+.+-.++=++++|+..+..|.. +.......+..||++|.+...... .+..+.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1122 2223556666788889999876543211 111111236778888887776542 3444443
No 300
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.74 E-value=0.052 Score=52.10 Aligned_cols=119 Identities=20% Similarity=0.284 Sum_probs=63.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEE---cCCccCHHHHHH------HHHHHcCCCCCC-CccccC
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVK---ASTELNIEKIQD------VIRSRLGIDPDG-DKWKNR 219 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---vs~~~~~~~~~~------~i~~~l~~~~~~-~~~~~~ 219 (798)
.-.+++|+|..|.|||||++.++... ......+++. +.. .+...... ++++.++..... ......
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 34699999999999999999998765 2233444432 221 12222211 145555543210 001112
Q ss_pred CHHH-HHHHHHHHhcCCcEEEEEecccCcccc------cccCCC-CCC-CcEEEEeCCchHHh
Q 003753 220 DDQG-RAAEIFRRLSNKKFALLLDDLRERIEL------SEAGVP-VQN-ASKIVFTTIFEEVC 273 (798)
Q Consensus 220 ~~~~-~~~~l~~~l~~~r~LlVlDdv~~~~~~------~~~~~p-~~~-gs~iivTTR~~~v~ 273 (798)
+..+ ..-.+.+.+-..+-++++|+.-...|. .+.... ... |..||++|.+.+..
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2222 223355667778889999986544321 111111 122 67788888776654
No 301
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.73 E-value=0.024 Score=50.88 Aligned_cols=101 Identities=16% Similarity=0.251 Sum_probs=41.5
Q ss_pred CCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccc-cccCCCCCCEEEcCCCCCcccCc-cccCCCccc
Q 003753 513 PCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHV-GEGELIDLQYLNLSNTNICELPI-GIKSCTHLR 590 (798)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~Ls~~~i~~lp~-~i~~l~~L~ 590 (798)
.++++|+.+.+.. .+..++...|.++.+|+.+++.++ +..++. .+.++.+|+.+.+.. .+..++. .+..+++|+
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 4455555555543 355555555556655666665543 444432 344454566666544 3333332 334455666
Q ss_pred EEeCCCCCCcccccchhhcCCCCCcccccc
Q 003753 591 TLLLDGTENLKAIPVGMLSSLLSLRVFSWV 620 (798)
Q Consensus 591 ~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~ 620 (798)
.+++..+ +..++...+.+. +|+.+.+.
T Consensus 85 ~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 85 NIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred ccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 6665432 445555445554 55555554
No 302
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.25 Score=47.94 Aligned_cols=162 Identities=19% Similarity=0.307 Sum_probs=87.9
Q ss_pred cc-chhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHH
Q 003753 132 IV-GIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIE 197 (798)
Q Consensus 132 ~v-Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 197 (798)
+| |.+..+.+|.+.++- ..++-+.++|++|.|||-||+.|+++- ...|+.||.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs---e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS---E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH---H
Confidence 45 457777777666521 356778899999999999999998875 2345666653 2
Q ss_pred HHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHh-cCCcEEEEEecccCcc------------c--------cccc-CC
Q 003753 198 KIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRL-SNKKFALLLDDLRERI------------E--------LSEA-GV 255 (798)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~------------~--------~~~~-~~ 255 (798)
-+++-|.+ . ......+.-.- ..-+-+|.+|.+++.- + +..+ ++
T Consensus 217 lvqk~ige----g-----------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgf 281 (404)
T KOG0728|consen 217 LVQKYIGE----G-----------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGF 281 (404)
T ss_pred HHHHHhhh----h-----------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccc
Confidence 22222210 0 11111111111 2346677778776531 0 0111 22
Q ss_pred CCCCCcEEEEeCCchHHhh-----hcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHH
Q 003753 256 PVQNASKIVFTTIFEEVCS-----SMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVA 319 (798)
Q Consensus 256 p~~~gs~iivTTR~~~v~~-----~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~ 319 (798)
...++-+||..|..-++.. --..+..++.++-+++.-.++++-+...-....--++..+|+++.
T Consensus 282 eatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~ 350 (404)
T KOG0728|consen 282 EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMP 350 (404)
T ss_pred ccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCC
Confidence 2456778888776544422 122445678888777777777765543222111223444444443
No 303
>PRK07667 uridine kinase; Provisional
Probab=95.70 E-value=0.025 Score=54.97 Aligned_cols=37 Identities=22% Similarity=0.469 Sum_probs=29.2
Q ss_pred HHHHHHHhhc--CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 139 LSEVWRYIED--DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 139 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.+++.+.+.. +...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455555533 455799999999999999999998877
No 304
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.70 E-value=0.081 Score=57.33 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=23.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+|.++|..|+||||+|..++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999988776
No 305
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.70 E-value=0.097 Score=60.82 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=59.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCcc-ccCCHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKW-KNRDDQGRAAEI 228 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~l 228 (798)
.-+++-|+|.+|+||||||.+++.... ..=..++|+.....++. ..+++++.+.+.-.. .....+.....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 357899999999999999988766542 23356799988777774 377778776532111 223445555555
Q ss_pred HHHhcC-CcEEEEEeccc
Q 003753 229 FRRLSN-KKFALLLDDLR 245 (798)
Q Consensus 229 ~~~l~~-~r~LlVlDdv~ 245 (798)
...++. +.-|+|+|.+.
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 555544 56689999975
No 306
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.66 E-value=0.0092 Score=53.61 Aligned_cols=22 Identities=41% Similarity=0.824 Sum_probs=20.0
Q ss_pred EEEEecCCchHHHHHHHHHHHh
Q 003753 154 IGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~ 175 (798)
|+|.|..|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998873
No 307
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.66 E-value=0.0028 Score=71.67 Aligned_cols=213 Identities=21% Similarity=0.241 Sum_probs=121.8
Q ss_pred HhcCCceeEEeCCCCccccc--ccccccCCCCCCEEEcCCC--CCcc----cCccccCCCcccEEeCCCCCCcccccchh
Q 003753 536 FKSMYALRVLDSSQNAKLSK--LHVGEGELIDLQYLNLSNT--NICE----LPIGIKSCTHLRTLLLDGTENLKAIPVGM 607 (798)
Q Consensus 536 ~~~l~~Lr~L~L~~~~~i~~--lp~~i~~L~~L~~L~Ls~~--~i~~----lp~~i~~l~~L~~L~l~~~~~l~~lp~~~ 607 (798)
...+++|+.|.+.++..+.. +-.....+++|+.|++++| .+.. .+.....+.+|+.|+++++..+++.--..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 45578999999998877765 4345667899999999873 2211 12244566889999999887555443222
Q ss_pred hc-CCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecccchhhhhhhhhhcccceeeeeccCch
Q 003753 608 LS-SLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEA 686 (798)
Q Consensus 608 i~-~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~ 686 (798)
+. .+++|++|.+.+|.... +.....-...+++|+.|+++.+.......+......
T Consensus 264 l~~~c~~L~~L~l~~c~~lt----------~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~-------------- 319 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLT----------DEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN-------------- 319 (482)
T ss_pred HHhhCCCcceEccCCCCccc----------hhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh--------------
Confidence 33 37899999977776320 222333445678899999986544322222222211
Q ss_pred hhhccCceEEeecc----CCCCCC--cccCC--CCccEEEeecCCchhhhhccccccCCCCcccccccccc-eeecCCcc
Q 003753 687 IFSQDLQDLSIINC----SIKDLT--CIVYI--PRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLR-QAYFFKLP 757 (798)
Q Consensus 687 ~lp~~L~~L~L~~~----~l~~l~--~l~~l--~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~ 757 (798)
. ++|+.|.+..+ .++.+. .+... ..+..+.+.+|+.++++.- ...+ ..... .+.+.+|+
T Consensus 320 -c-~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l---------~~~~-~~~~~~~~~l~gc~ 387 (482)
T KOG1947|consen 320 -C-PNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSL---------SYCG-ISDLGLELSLRGCP 387 (482)
T ss_pred -C-cchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhh---------hhhh-ccCcchHHHhcCCc
Confidence 1 44555444333 222221 11222 2677777777777666521 1111 12222 56677777
Q ss_pred ch-hhcccCCCCCCCcceeeeccCCCCC
Q 003753 758 NL-KNICHKAMAFPSLERIYVHGCPSLR 784 (798)
Q Consensus 758 ~l-~~i~~~~~~~~~L~~L~l~~c~~L~ 784 (798)
.+ ..+......++.|+.|.++.|...+
T Consensus 388 ~l~~~l~~~~~~~~~l~~L~l~~~~~~t 415 (482)
T KOG1947|consen 388 NLTESLELRLCRSDSLRVLNLSDCRLVT 415 (482)
T ss_pred ccchHHHHHhccCCccceEecccCcccc
Confidence 77 4444333444558888888876554
No 308
>PHA00729 NTP-binding motif containing protein
Probab=95.66 E-value=0.016 Score=56.80 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=28.6
Q ss_pred HHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 141 EVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 141 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.+++.+.+.+...|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555556677789999999999999999998875
No 309
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.65 E-value=0.047 Score=52.05 Aligned_cols=125 Identities=14% Similarity=0.197 Sum_probs=62.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCC--ccCHHHHHHHHHHHcCCCCCCCcccc-------CC
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAST--ELNIEKIQDVIRSRLGIDPDGDKWKN-------RD 220 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~~~~~~-------~~ 220 (798)
.-.+++|+|..|.|||||++.++... ......+++.-.. ...... +...++...+...... -+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~q~~~~~~~tv~~~lLS 98 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL----RPTSGRVRLDGADISQWDPNE----LGDHVGYLPQDDELFSGSIAENILS 98 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc----CCCCCeEEECCEEcccCCHHH----HHhheEEECCCCccccCcHHHHCcC
Confidence 34699999999999999999998765 2223333332111 111111 1222222111110000 11
Q ss_pred HHH-HHHHHHHHhcCCcEEEEEecccCccccc------ccCCC-CCCCcEEEEeCCchHHhhhcCCCcceec
Q 003753 221 DQG-RAAEIFRRLSNKKFALLLDDLRERIELS------EAGVP-VQNASKIVFTTIFEEVCSSMSVDWRFKV 284 (798)
Q Consensus 221 ~~~-~~~~l~~~l~~~r~LlVlDdv~~~~~~~------~~~~p-~~~gs~iivTTR~~~v~~~~~~~~~~~l 284 (798)
..+ ..-.+.+.+-.++=++++|+.-...|.. +.... ...|..||++|.+.+... . .+.++.+
T Consensus 99 ~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 99 GGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 111 2223455566677788999876543211 11111 234677888887776654 2 3444443
No 310
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.65 E-value=0.0038 Score=36.42 Aligned_cols=21 Identities=33% Similarity=0.735 Sum_probs=12.1
Q ss_pred CCCEEEcCCCCCcccCccccC
Q 003753 565 DLQYLNLSNTNICELPIGIKS 585 (798)
Q Consensus 565 ~L~~L~Ls~~~i~~lp~~i~~ 585 (798)
+|++||+++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666555443
No 311
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.64 E-value=0.098 Score=54.88 Aligned_cols=92 Identities=20% Similarity=0.263 Sum_probs=49.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHH--HHHHHHHHcCCCCCCCccccCCHHH-HHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEK--IQDVIRSRLGIDPDGDKWKNRDDQG-RAA 226 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~-~~~ 226 (798)
...+++++|++|+||||++..++.... ... ..+..+... .+.... -+.......+.+.-... ...+... ...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~--~~g-~~V~Li~~D-~~r~~a~eql~~~a~~~~i~~~~~~-~~~dpa~~v~~ 187 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK--AQG-KKVLLAAGD-TFRAAAIEQLQVWGERVGVPVIAQK-EGADPASVAFD 187 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--hcC-CeEEEEecC-ccchhhHHHHHHHHHHcCceEEEeC-CCCCHHHHHHH
Confidence 468999999999999999999988873 222 234444432 222211 12233344443321000 1122222 223
Q ss_pred HHHHHhcCCcEEEEEecccC
Q 003753 227 EIFRRLSNKKFALLLDDLRE 246 (798)
Q Consensus 227 ~l~~~l~~~r~LlVlDdv~~ 246 (798)
.+.....++.=++|+|-.-.
T Consensus 188 ~l~~~~~~~~D~ViIDTaGr 207 (318)
T PRK10416 188 AIQAAKARGIDVLIIDTAGR 207 (318)
T ss_pred HHHHHHhCCCCEEEEeCCCC
Confidence 34444455555888887643
No 312
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.63 E-value=0.099 Score=53.81 Aligned_cols=82 Identities=18% Similarity=0.091 Sum_probs=44.8
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 228 (798)
..+.+|+|.|..|+||||+|+.+....... ..-..+..++...-....+... ..+...........+.......+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~-~~~g~V~vi~~D~f~~~~~~l~----~~g~~~~~g~P~s~D~~~l~~~L 134 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRW-PEHRKVELITTDGFLHPNQVLK----ERNLMKKKGFPESYDMHRLVKFL 134 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhc-CCCCceEEEecccccccHHHHH----HcCCccccCCChhccHHHHHHHH
Confidence 456899999999999999998876655210 1111344444433322222222 22222111122455667777766
Q ss_pred HHHhcCC
Q 003753 229 FRRLSNK 235 (798)
Q Consensus 229 ~~~l~~~ 235 (798)
...-.++
T Consensus 135 ~~Lk~g~ 141 (290)
T TIGR00554 135 SDLKSGK 141 (290)
T ss_pred HHHHCCC
Confidence 6665554
No 313
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.58 E-value=0.031 Score=66.14 Aligned_cols=102 Identities=20% Similarity=0.311 Sum_probs=60.8
Q ss_pred CcccchhHHHHHHHHHhhc-------C--CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIED-------D--GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQ 200 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 200 (798)
..++|.+..++.+.+.+.. . ...++.++|+.|+|||+||+.++... . ...+.++.++-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l---~---~~~~~~d~se~~~~~~-- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL---G---VHLERFDMSEYMEKHT-- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh---c---CCeEEEeCchhhhccc--
Confidence 3688999999998888742 1 23468899999999999999998865 1 2345565554322111
Q ss_pred HHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCC-cEEEEEecccCc
Q 003753 201 DVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNK-KFALLLDDLRER 247 (798)
Q Consensus 201 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-r~LlVlDdv~~~ 247 (798)
+..-++.+.. +...+. ...+.+.++.+ .-+++||+++..
T Consensus 526 --~~~lig~~~g---yvg~~~---~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 --VSRLIGAPPG---YVGFEQ---GGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred --HHHHhcCCCC---Ccccch---hhHHHHHHHhCCCeEEEEechhhc
Confidence 1222232221 111111 12233444444 459999999864
No 314
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.24 Score=56.78 Aligned_cols=170 Identities=15% Similarity=0.222 Sum_probs=97.5
Q ss_pred CcccchhHHHHHHHH---Hhhc---------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHH
Q 003753 130 NNIVGIESRLSEVWR---YIED---------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIE 197 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~---~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 197 (798)
.++.|-|+.+++|.+ +|.. .-++=+-++|++|+|||-||++++... . +=|+++|..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-g-------VPF~svSGS---- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G-------VPFFSVSGS---- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-C-------CceeeechH----
Confidence 367888876666655 4433 225678899999999999999999876 2 223444432
Q ss_pred HHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHh-cCCcEEEEEecccCccc-----------------ccccCCC---
Q 003753 198 KIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRL-SNKKFALLLDDLRERIE-----------------LSEAGVP--- 256 (798)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~~-----------------~~~~~~p--- 256 (798)
+..+.+... . ..++..+...- ...+..+.+|+++...- +..+ ++
T Consensus 379 ----EFvE~~~g~---------~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQl-l~emD 443 (774)
T KOG0731|consen 379 ----EFVEMFVGV---------G-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQL-LVEMD 443 (774)
T ss_pred ----HHHHHhccc---------c-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHH-HHHhc
Confidence 222222111 1 22333333322 34678888888765321 1111 11
Q ss_pred ---CCCCcEEEEeCCchHHhhh-----cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchH
Q 003753 257 ---VQNASKIVFTTIFEEVCSS-----MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLA 328 (798)
Q Consensus 257 ---~~~gs~iivTTR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 328 (798)
...+--++-+|+..++... -.-+..+.++.-+.....++|+-++...... .+..++++ |+...-|.+=|
T Consensus 444 gf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 444 GFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHH
Confidence 2222334446665555321 1234567777778888889999888655432 34455666 88877777754
Q ss_pred H
Q 003753 329 L 329 (798)
Q Consensus 329 i 329 (798)
.
T Consensus 521 d 521 (774)
T KOG0731|consen 521 D 521 (774)
T ss_pred H
Confidence 3
No 315
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.56 E-value=0.12 Score=51.93 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=35.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcC
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 208 (798)
.-.++.|.|.+|+||||+|.++..... ..-..++|++.... .+++... +++++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~--~~~i~~~-~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES--RESIIRQ-AAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC--HHHHHHH-HHHhC
Confidence 357999999999999999998776542 22357788876443 3444433 44444
No 316
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.54 E-value=0.089 Score=58.11 Aligned_cols=184 Identities=18% Similarity=0.173 Sum_probs=100.1
Q ss_pred CcccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcC
Q 003753 130 NNIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 208 (798)
+++||-+.-...|...+..+.. .--...|+-|+||||+|+-++.-..-.. | .....+..-..-+.|...-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~-------~-~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN-------G-PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC-------C-CCCCcchhhhhhHhhhcCCc
Confidence 3689999999999999977653 4566789999999999998877652111 0 11111111122223322100
Q ss_pred CCCCCC-ccccCCHHHHHHHHHHHh-----cCCcEEEEEecccCc--cccccc----CCCCCCCcEEEE-eCCchHHh-h
Q 003753 209 IDPDGD-KWKNRDDQGRAAEIFRRL-----SNKKFALLLDDLRER--IELSEA----GVPVQNASKIVF-TTIFEEVC-S 274 (798)
Q Consensus 209 ~~~~~~-~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~--~~~~~~----~~p~~~gs~iiv-TTR~~~v~-~ 274 (798)
.+.-+- .-.....++. +.|.+.. +++.=+.|+|.|.-. ..+..+ --| ......|+ ||--..+. .
T Consensus 88 ~DviEiDaASn~gVddi-R~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP-P~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 88 IDVIEIDAASNTGVDDI-REIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP-PSHVKFILATTEPQKIPNT 165 (515)
T ss_pred ccchhhhhhhccChHHH-HHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccC-ccCeEEEEecCCcCcCchh
Confidence 000000 0011122222 2222222 345668999998643 222222 122 33444454 55444442 2
Q ss_pred hcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc
Q 003753 275 SMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP 326 (798)
Q Consensus 275 ~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 326 (798)
...-.+.|.+..++.++-...+...+........ ++....|++...|..
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSL 214 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCCh
Confidence 2334568999999999999888888876554333 334555666665543
No 317
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.53 E-value=0.071 Score=57.17 Aligned_cols=87 Identities=26% Similarity=0.329 Sum_probs=51.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCcc-ccCCHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKW-KNRDDQGRAAEIF 229 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~l~ 229 (798)
-.++.|.|.+|+|||||+.+++.... ..-..++|++..+. ..++ ..-++.++...+.... ...+.+.+.+.+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 47999999999999999999988763 23356788876543 3333 2234556654321110 1223333333332
Q ss_pred HHhcCCcEEEEEecccC
Q 003753 230 RRLSNKKFALLLDDLRE 246 (798)
Q Consensus 230 ~~l~~~r~LlVlDdv~~ 246 (798)
..+.-++|+|.+..
T Consensus 156 ---~~~~~lVVIDSIq~ 169 (372)
T cd01121 156 ---ELKPDLVIIDSIQT 169 (372)
T ss_pred ---hcCCcEEEEcchHH
Confidence 23566888888754
No 318
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.50 E-value=0.02 Score=51.84 Aligned_cols=45 Identities=24% Similarity=0.485 Sum_probs=35.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCC
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDP 211 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 211 (798)
+|.|-|.+|+||||+|+.++++.. - . .+ +.-.++++|+++.|.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g-l--~-----~v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG-L--K-----LV------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC-C--c-----ee------eccHHHHHHHHHcCCCH
Confidence 689999999999999999998872 1 1 11 33478899999888765
No 319
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.50 E-value=0.024 Score=54.00 Aligned_cols=23 Identities=43% Similarity=0.564 Sum_probs=21.2
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.|.|.|.+|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 320
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.49 E-value=0.011 Score=46.33 Aligned_cols=23 Identities=43% Similarity=0.671 Sum_probs=20.7
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 321
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.45 E-value=0.026 Score=58.84 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=24.7
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+..++|||++|.|||.+|+.+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 456899999999999999999999987
No 322
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.45 E-value=0.048 Score=50.45 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=21.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
||.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998876
No 323
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.44 E-value=0.35 Score=51.00 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=21.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+.++|+.|+||||+|+.++...
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999987765
No 324
>PRK08233 hypothetical protein; Provisional
Probab=95.42 E-value=0.012 Score=56.58 Aligned_cols=25 Identities=40% Similarity=0.586 Sum_probs=22.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+|+|.|.+|+||||||+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4799999999999999999998876
No 325
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.42 E-value=0.014 Score=57.68 Aligned_cols=27 Identities=30% Similarity=0.494 Sum_probs=24.2
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
....+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998876
No 326
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=2.8 Score=45.06 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=42.5
Q ss_pred cEE-EEeCCchHH-----hhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHH
Q 003753 261 SKI-VFTTIFEEV-----CSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGS 334 (798)
Q Consensus 261 s~i-ivTTR~~~v-----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 334 (798)
=|| |.||-..+- .+....+-.+.+.--+.+.-..||....+... .+ .++.+|.+...|.-+.=..++.
T Consensus 338 ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h----~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 338 ERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DH----RLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred ceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--Cc----chhHHHHHHhhcCccCHHHHHH
Confidence 355 457765443 22112344578888899999999999887643 12 3456666655666555555555
Q ss_pred Hhc
Q 003753 335 AMA 337 (798)
Q Consensus 335 ~l~ 337 (798)
.|-
T Consensus 412 ~lm 414 (457)
T KOG0743|consen 412 ELM 414 (457)
T ss_pred HHh
Confidence 543
No 327
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.41 E-value=0.076 Score=52.31 Aligned_cols=89 Identities=19% Similarity=0.268 Sum_probs=50.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEE-------cCCccCHHHH--HHHHHHHcCCCCCCCccc---
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVK-------ASTELNIEKI--QDVIRSRLGIDPDGDKWK--- 217 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-------vs~~~~~~~~--~~~i~~~l~~~~~~~~~~--- 217 (798)
....|.++||+|+||||..++++.+... +.....++=.. ..-+.|+.+. .++..++.++.+.+.-..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~-~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHA-KKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhh-ccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 4568899999999999999999888732 22222232221 2233455544 456777776655331111
Q ss_pred --cCCHHHHHHHHHHHhcCCcEEE
Q 003753 218 --NRDDQGRAAEIFRRLSNKKFAL 239 (798)
Q Consensus 218 --~~~~~~~~~~l~~~l~~~r~Ll 239 (798)
....++.+..|.+.-..-.|.|
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~l 120 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVL 120 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEE
Confidence 1234455555555544444544
No 328
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.40 E-value=0.58 Score=46.55 Aligned_cols=203 Identities=14% Similarity=0.149 Sum_probs=113.2
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhh---hcCCCCeEEEEEcCCc--------------
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSD---MSHKFGAVIMVKASTE-------------- 193 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~-------------- 193 (798)
.+.++++...++.....+++.+-..++|++|.||-|.+..+.++.=. .+-.-+...|.+-|..
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 46678888888887777677899999999999999888666554310 0122344555543332
Q ss_pred -------cCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcE-EEEEecccCcc-cccccCCC-----CCC
Q 003753 194 -------LNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKF-ALLLDDLRERI-ELSEAGVP-----VQN 259 (798)
Q Consensus 194 -------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~-LlVlDdv~~~~-~~~~~~~p-----~~~ 259 (798)
..-.-+.++|+++.+...+ + +.-.++.| ++|+-.+++.. +-.. ++. -..
T Consensus 94 itPSDaG~~DRvViQellKevAQt~q---------------i-e~~~qr~fKvvvi~ead~LT~dAQ~-aLRRTMEkYs~ 156 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQ---------------I-ETQGQRPFKVVVINEADELTRDAQH-ALRRTMEKYSS 156 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcc---------------h-hhccccceEEEEEechHhhhHHHHH-HHHHHHHHHhc
Confidence 1122333444443322110 0 00112344 55555555431 1000 011 234
Q ss_pred CcEEEEe----CCchHHhhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHHH
Q 003753 260 ASKIVFT----TIFEEVCSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGSA 335 (798)
Q Consensus 260 gs~iivT----TR~~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~ 335 (798)
.+|+|+. ||.-+-.. .-.-.++++..+++|-...+.+.+.......+ .+++.+|+++++|.---...+-..
T Consensus 157 ~~RlIl~cns~SriIepIr--SRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~ 231 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIR--SRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEA 231 (351)
T ss_pred CceEEEEecCcccchhHHh--hheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHH
Confidence 5666653 22211111 11235789999999999999988876654444 578999999998875332222222
Q ss_pred hcCC----------CChhHHHHHHHHHhcC
Q 003753 336 MASR----------RDPDNWRYAIEELQRY 355 (798)
Q Consensus 336 l~~~----------~~~~~w~~~~~~l~~~ 355 (798)
++-+ -..-+|+-++.+....
T Consensus 232 ~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 232 VRVNNEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred HHhccccccccCCCCCCccHHHHHHHHHHH
Confidence 2211 1345799888776654
No 329
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.40 E-value=0.021 Score=52.54 Aligned_cols=36 Identities=28% Similarity=0.323 Sum_probs=27.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEE
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVK 189 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 189 (798)
..||.|.|.+|+||||||+++..... ..-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~---~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLF---ARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHH---HTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEec
Confidence 36899999999999999999999883 3334555553
No 330
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.38 E-value=0.034 Score=51.12 Aligned_cols=101 Identities=21% Similarity=0.253 Sum_probs=54.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF 229 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 229 (798)
.-.+++|+|..|.|||||++.+.... ......+|+.-. ..++... +-..-+...-.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~~~-------------~~i~~~~-----~lS~G~~~rv~la 82 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL----EPDEGIVTWGST-------------VKIGYFE-----QLSGGEKMRLALA 82 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC----CCCceEEEECCe-------------EEEEEEc-----cCCHHHHHHHHHH
Confidence 34699999999999999999997765 222344444210 0011000 0011122223355
Q ss_pred HHhcCCcEEEEEecccCccc------ccccCCCCCCCcEEEEeCCchHHhh
Q 003753 230 RRLSNKKFALLLDDLRERIE------LSEAGVPVQNASKIVFTTIFEEVCS 274 (798)
Q Consensus 230 ~~l~~~r~LlVlDdv~~~~~------~~~~~~p~~~gs~iivTTR~~~v~~ 274 (798)
+.+..++-++++|+.-...| +.+.. ..-+..||++|.+.+...
T Consensus 83 ral~~~p~illlDEP~~~LD~~~~~~l~~~l--~~~~~til~~th~~~~~~ 131 (144)
T cd03221 83 KLLLENPNLLLLDEPTNHLDLESIEALEEAL--KEYPGTVILVSHDRYFLD 131 (144)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHH--HHcCCEEEEEECCHHHHH
Confidence 66666777889998654422 11111 111346777777666543
No 331
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.37 E-value=0.13 Score=56.46 Aligned_cols=87 Identities=21% Similarity=0.194 Sum_probs=50.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccC-HHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELN-IEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF 229 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 229 (798)
.+++.++|++|+||||++..++..... ...-..+..|+...... ..+-+....+.++.+.. ...+..+....+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~-~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~----~~~~~~~l~~~l~ 295 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYAL-LYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE----VVYDPKELAKALE 295 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE----ccCCHHhHHHHHH
Confidence 369999999999999999988777620 12234566676543211 22334444555565542 2233444444444
Q ss_pred HHhcCCcEEEEEecc
Q 003753 230 RRLSNKKFALLLDDL 244 (798)
Q Consensus 230 ~~l~~~r~LlVlDdv 244 (798)
+ +. ..=++++|..
T Consensus 296 ~-~~-~~DlVlIDt~ 308 (424)
T PRK05703 296 Q-LR-DCDVILIDTA 308 (424)
T ss_pred H-hC-CCCEEEEeCC
Confidence 3 33 3567888865
No 332
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.37 E-value=0.015 Score=57.74 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=21.0
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.|.|.|++|+||||+|+.+++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998876
No 333
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.33 E-value=0.015 Score=53.42 Aligned_cols=23 Identities=48% Similarity=0.628 Sum_probs=20.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998765
No 334
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.33 E-value=0.066 Score=54.66 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=30.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCC
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAST 192 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 192 (798)
.-+++.|.|.+|+|||++|.++..... ..=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 347999999999999999999876652 2234677887754
No 335
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.32 E-value=0.032 Score=50.13 Aligned_cols=114 Identities=11% Similarity=0.237 Sum_probs=53.3
Q ss_pred ceeeEEeecCCCCCCCCCC-CCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccc-ccccCCCCCCEEE
Q 003753 493 EAVRVSLWRSPSIDSLSPT-PPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLH-VGEGELIDLQYLN 570 (798)
Q Consensus 493 ~l~~lsl~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~ 570 (798)
+++.+.+.. .+..++.. +..+++|+.+.+.++ +..++...|.+++.|+.+.+..+ +..++ ..+..+.+|+.++
T Consensus 13 ~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 13 NLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp T--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEE
T ss_pred CCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccccccc
Confidence 556666553 34555433 366667888877664 77777777777777888888643 44443 3455577788887
Q ss_pred cCCCCCcccC-ccccCCCcccEEeCCCCCCcccccchhhcCCCCCc
Q 003753 571 LSNTNICELP-IGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLR 615 (798)
Q Consensus 571 Ls~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~ 615 (798)
+..+ +..++ ..+.++ +|+.+.+..+ +..++...+.++++|+
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKLK 129 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG------
T ss_pred cCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccCC
Confidence 7654 55553 345555 7777777653 5666666666666553
No 336
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.32 E-value=0.047 Score=52.33 Aligned_cols=26 Identities=38% Similarity=0.519 Sum_probs=22.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.-.+++|+|..|.|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34699999999999999999998654
No 337
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.31 E-value=0.92 Score=47.31 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=39.7
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHH
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKI 199 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 199 (798)
.++=..+....++.++..+ +.|.|.|.+|+||||+|+.++... ... .+.|..+...+..++
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l---~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARL---NWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHH---CCC---eEEEEecCCCChhhc
Confidence 3444444556677777543 469999999999999999999887 222 234555554444333
No 338
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.30 E-value=0.035 Score=53.98 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=29.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCC-------CeEEEEEcCCc
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKF-------GAVIMVKASTE 193 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-------~~~~wv~vs~~ 193 (798)
.++.|.|.+|+||||++.++..........| ..++|+.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 5899999999999999999888774322222 36788876665
No 339
>PRK04328 hypothetical protein; Provisional
Probab=95.30 E-value=0.064 Score=54.45 Aligned_cols=54 Identities=17% Similarity=0.080 Sum_probs=36.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
.-.++.|.|.+|+|||+||.++..... ..-..++|++..+. ..++. +.+++++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~---~~ge~~lyis~ee~--~~~i~-~~~~~~g~ 75 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGVYVALEEH--PVQVR-RNMRQFGW 75 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEEeeCC--HHHHH-HHHHHcCC
Confidence 357999999999999999999766641 23456788876663 33433 33455544
No 340
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.29 E-value=0.12 Score=55.91 Aligned_cols=87 Identities=20% Similarity=0.259 Sum_probs=48.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc-cCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE-LNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF 229 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 229 (798)
..+++++|..|+||||++..+.... ......+.+..++.... ....+-+....+.++.+.. ...+..+....+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~----~v~~~~dl~~al- 264 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR----SIKDIADLQLML- 264 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee----cCCCHHHHHHHH-
Confidence 4799999999999999999887764 11222344555543332 2334445566666776652 223333333222
Q ss_pred HHhcCCcEEEEEecc
Q 003753 230 RRLSNKKFALLLDDL 244 (798)
Q Consensus 230 ~~l~~~r~LlVlDdv 244 (798)
..++++ -++++|-.
T Consensus 265 ~~l~~~-d~VLIDTa 278 (420)
T PRK14721 265 HELRGK-HMVLIDTV 278 (420)
T ss_pred HHhcCC-CEEEecCC
Confidence 234443 34556654
No 341
>PTZ00301 uridine kinase; Provisional
Probab=95.29 E-value=0.022 Score=55.83 Aligned_cols=25 Identities=32% Similarity=0.614 Sum_probs=22.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+|+|.|.+|+||||||+.+....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999998776
No 342
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.29 E-value=0.081 Score=56.78 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=35.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc-cCHHHHHHHHHHHcCCCC
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE-LNIEKIQDVIRSRLGIDP 211 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~ 211 (798)
..++.++|++|+||||++.+++..... ...+ .+..++.... ......++..++.++.+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~-~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~ 282 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFL-HMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPF 282 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-hcCC-eEEEecccchhhhHHHHHHHHHHhcCCCe
Confidence 468999999999999999999876521 2222 3333433221 123334445555555543
No 343
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.28 E-value=0.052 Score=51.88 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=23.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+|+|+|.+|+||||+|+.+....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999999887
No 344
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.28 E-value=0.043 Score=50.14 Aligned_cols=75 Identities=23% Similarity=0.289 Sum_probs=46.1
Q ss_pred EEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhc
Q 003753 154 IGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLS 233 (798)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 233 (798)
|.++|.+|+|||+||+.+++... ....-+.++...+..++....--. .....+.........
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~------~~~~~i~~~~~~~~~dl~g~~~~~----~~~~~~~~~~l~~a~-------- 63 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG------RPVIRINCSSDTTEEDLIGSYDPS----NGQFEFKDGPLVRAM-------- 63 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT------CEEEEEE-TTTSTHHHHHCEEET-----TTTTCEEE-CCCTTH--------
T ss_pred EEEECCCCCCHHHHHHHHHHHhh------cceEEEEeccccccccceeeeeec----ccccccccccccccc--------
Confidence 67899999999999999998871 234556788888887776533211 111111111111001
Q ss_pred CCcEEEEEecccC
Q 003753 234 NKKFALLLDDLRE 246 (798)
Q Consensus 234 ~~r~LlVlDdv~~ 246 (798)
.+..++|||++..
T Consensus 64 ~~~~il~lDEin~ 76 (139)
T PF07728_consen 64 RKGGILVLDEINR 76 (139)
T ss_dssp HEEEEEEESSCGG
T ss_pred cceeEEEECCccc
Confidence 1789999999874
No 345
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.27 E-value=0.1 Score=50.70 Aligned_cols=45 Identities=31% Similarity=0.546 Sum_probs=36.6
Q ss_pred cccchhHHHHHHHHHh----hcCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYI----EDDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++|.|..++.+++-- ..-...-|.+||.-|.|||.|++++.+.+
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 6889988888776533 33345678899999999999999999988
No 346
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.25 E-value=0.028 Score=66.25 Aligned_cols=191 Identities=16% Similarity=0.167 Sum_probs=88.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh-hhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF-SDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 228 (798)
+..++.|+|+.|.||||+.+.+.... ...... +|.+.....+ ..+..+...++.... -.....+...-...+
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~-----~Vpa~~~~~~-~~~d~i~~~i~~~~s-i~~~LStfS~~m~~~ 393 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI-----PIPANEHSEI-PYFEEIFADIGDEQS-IEQNLSTFSGHMKNI 393 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhCC-----CccCCccccc-cchhheeeecChHhH-HhhhhhHHHHHHHHH
Confidence 34799999999999999999886652 111111 1111110000 001111100000000 000001111111222
Q ss_pred HHHhc--CCcEEEEEecccCccccc---ccC---CC--CCCCcEEEEeCCchHHhhhcCCCcceeccCCChH-HHHHHHH
Q 003753 229 FRRLS--NKKFALLLDDLRERIELS---EAG---VP--VQNASKIVFTTIFEEVCSSMSVDWRFKVDYLPQE-EAWNLFR 297 (798)
Q Consensus 229 ~~~l~--~~r~LlVlDdv~~~~~~~---~~~---~p--~~~gs~iivTTR~~~v~~~~~~~~~~~l~~L~~~-~a~~Lf~ 297 (798)
...+. ..+-|+++|..-...+.. .+. +. ...|+.+|+||-..++.........+.-..+..+ +... |.
T Consensus 394 ~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~ 472 (771)
T TIGR01069 394 SAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PT 472 (771)
T ss_pred HHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eE
Confidence 22332 478999999986543211 110 11 3468899999998887543211111111111100 0000 00
Q ss_pred HhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHHHhcCCCChhHHHHHHHHHhcC
Q 003753 298 LKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRY 355 (798)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~ 355 (798)
-++-... .. ...|-.|++++ |+|-.+.--|..+.. .....++.+++.|...
T Consensus 473 Ykl~~G~-~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~~ 523 (771)
T TIGR01069 473 YKLLKGI-PG----ESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSAL 523 (771)
T ss_pred EEECCCC-CC----CcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence 1111111 11 34578888877 788888888877765 3445666666655543
No 347
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.25 E-value=0.066 Score=58.58 Aligned_cols=97 Identities=18% Similarity=0.180 Sum_probs=60.7
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCcc-CHHHHHHHHHHHcCCCCCC--CccccCCH----
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTEL-NIEKIQDVIRSRLGIDPDG--DKWKNRDD---- 221 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~---- 221 (798)
..-..++|.|.+|+|||||+.++.+... +.+-+.++++-+++.. .+.++...+...-.....- ....+...
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 3446899999999999999999988773 3466888888776654 4666776665432211000 00011111
Q ss_pred --HHHHHHHHHHh---cCCcEEEEEecccCc
Q 003753 222 --QGRAAEIFRRL---SNKKFALLLDDLRER 247 (798)
Q Consensus 222 --~~~~~~l~~~l---~~~r~LlVlDdv~~~ 247 (798)
...+..+.+++ .++.+|+++||+-..
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 12233445555 379999999998543
No 348
>PRK06762 hypothetical protein; Provisional
Probab=95.25 E-value=0.017 Score=54.77 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=22.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998776
No 349
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.23 E-value=0.017 Score=56.86 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=23.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+|+|+|++|+||||||+.++...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998876
No 350
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.039 Score=55.64 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=49.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhh-cCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDM-SHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF 229 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 229 (798)
-++|.++|++|.|||+|.+.+++..... .+.|....-+.++ ...++.+...+ ...-.....++|+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin----shsLFSKWFsE----------SgKlV~kmF~kI~ 242 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN----SHSLFSKWFSE----------SGKLVAKMFQKIQ 242 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe----hhHHHHHHHhh----------hhhHHHHHHHHHH
Confidence 4799999999999999999999987421 2333333333322 22333333222 1234456666777
Q ss_pred HHhcCCcE--EEEEecccC
Q 003753 230 RRLSNKKF--ALLLDDLRE 246 (798)
Q Consensus 230 ~~l~~~r~--LlVlDdv~~ 246 (798)
+.+.++.. .+.+|.|.+
T Consensus 243 ELv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHHhCCCcEEEEEeHHHHH
Confidence 77766443 444688764
No 351
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.20 E-value=0.001 Score=63.40 Aligned_cols=84 Identities=18% Similarity=0.125 Sum_probs=60.2
Q ss_pred CCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCccccCCCcccEE
Q 003753 513 PCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKSCTHLRTL 592 (798)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L 592 (798)
..+.....|+++.|.+..+... |+.+..|..||++.| .+..+|..++.+..++.+++..|..+.+|.+++++++++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 4566677777777766666555 666677777777777 77777777777777777777777777777777777777777
Q ss_pred eCCCCC
Q 003753 593 LLDGTE 598 (798)
Q Consensus 593 ~l~~~~ 598 (798)
++.++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 777765
No 352
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.18 E-value=0.04 Score=53.26 Aligned_cols=50 Identities=30% Similarity=0.405 Sum_probs=33.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCC
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDP 211 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 211 (798)
.|+|+|-||+||||+|..+..... .++-..+.-|+...+++. ..+||...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~--~~~~~~VLvVDaDpd~nL-------~~~LGve~ 51 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLL--SKGGYNVLVVDADPDSNL-------PEALGVEE 51 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHH--hcCCceEEEEeCCCCCCh-------HHhcCCCC
Confidence 689999999999999999666652 233234555666666554 34556554
No 353
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.16 E-value=0.041 Score=50.15 Aligned_cols=39 Identities=15% Similarity=0.439 Sum_probs=29.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCC
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAST 192 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 192 (798)
++|.|+|..|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4899999999999999999999983 45666666666554
No 354
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.14 E-value=0.11 Score=49.49 Aligned_cols=26 Identities=35% Similarity=0.586 Sum_probs=22.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.-.+++|+|..|+|||||++.+....
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44699999999999999999998764
No 355
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.13 E-value=0.081 Score=49.98 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=58.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCC--C---CeEEEEEcCCcc--CHHHHHHHHHHHcCCCCCCCccccCCH-
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHK--F---GAVIMVKASTEL--NIEKIQDVIRSRLGIDPDGDKWKNRDD- 221 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--f---~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~- 221 (798)
.-.+++|+|..|.|||||++.+.......... + ..+.++ .+.. ....+...+.-. .. ..-+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~-----~~LS~G 95 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WD-----DVLSGG 95 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CC-----CCCCHH
Confidence 34689999999999999999998765221111 1 112222 2222 111233333210 11 11222
Q ss_pred HHHHHHHHHHhcCCcEEEEEecccCccccc------ccCCCCCCCcEEEEeCCchHHhh
Q 003753 222 QGRAAEIFRRLSNKKFALLLDDLRERIELS------EAGVPVQNASKIVFTTIFEEVCS 274 (798)
Q Consensus 222 ~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~------~~~~p~~~gs~iivTTR~~~v~~ 274 (798)
+...-.+.+.+-.++=++++|+--+..|.. +.. ...+..||++|.+.....
T Consensus 96 ~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l--~~~~~tiiivsh~~~~~~ 152 (166)
T cd03223 96 EQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL--KELGITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHH--HHhCCEEEEEeCChhHHh
Confidence 222334556666777888899865432211 111 111456777887766543
No 356
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.11 E-value=0.1 Score=51.80 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=21.4
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+|+|.|.+|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998877
No 357
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.09 E-value=0.038 Score=49.43 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhc--CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 137 SRLSEVWRYIED--DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 137 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
++.+++-+.|.. ....+|.+.|.-|+||||+++.+++..
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344444444433 334699999999999999999998876
No 358
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.08 E-value=0.044 Score=47.99 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=34.7
Q ss_pred cccchhHHHHHHHHHhhc-------CCceEEEEEecCCchHHHHHHHHHHH
Q 003753 131 NIVGIESRLSEVWRYIED-------DGVKIIGLYGVRGVGKSTLLKQLNDT 174 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (798)
.++|..-..+.+++.+.+ ..+-|++.+|..|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 577877777766666632 44679999999999999999888877
No 359
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.07 E-value=0.056 Score=55.20 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=30.6
Q ss_pred HHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 140 SEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 140 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
++..+++.+.+..++.|.|.+|+|||||+..+.+..
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345556666789999999999999999999998886
No 360
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.07 E-value=0.022 Score=57.01 Aligned_cols=91 Identities=19% Similarity=0.159 Sum_probs=52.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCC-----------Cccc-
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDG-----------DKWK- 217 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----------~~~~- 217 (798)
.-.++.|.|.+|+|||++|.++...... ..=+.++|++..++ ..++.+.+. .++.+... ....
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~--~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLK--NFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH--HHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhh--hcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 3479999999999999999987655421 11356788877554 344444432 44332100 0000
Q ss_pred ----cCCHHHHHHHHHHHhcC-CcEEEEEeccc
Q 003753 218 ----NRDDQGRAAEIFRRLSN-KKFALLLDDLR 245 (798)
Q Consensus 218 ----~~~~~~~~~~l~~~l~~-~r~LlVlDdv~ 245 (798)
..+.+.....+.+.++. +...+|+|.+.
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 34566666666666554 44677888754
No 361
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.07 E-value=0.064 Score=53.18 Aligned_cols=61 Identities=26% Similarity=0.365 Sum_probs=37.8
Q ss_pred HHHHHHHHhh--cCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHH
Q 003753 138 RLSEVWRYIE--DDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKI 199 (798)
Q Consensus 138 ~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 199 (798)
...++++.+. .++..+|+|.|++|+|||||.-.+...+.. +.+==.++-|+-|..++--.+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~-~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRE-RGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHH-TT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhh-cCCceEEEEECCCCCCCCCcc
Confidence 3445555553 356789999999999999999999888842 333335666666666654333
No 362
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.07 E-value=0.035 Score=56.71 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=20.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFS 176 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (798)
+.|.|+|.+|+||||+|+++.....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 4789999999999999999999874
No 363
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.05 E-value=0.091 Score=49.93 Aligned_cols=125 Identities=20% Similarity=0.261 Sum_probs=63.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCC--ccCHHHHHHHHHHHcCCCCCCCcccc-------CC
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAST--ELNIEKIQDVIRSRLGIDPDGDKWKN-------RD 220 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~~~~~~-------~~ 220 (798)
.-.+++|+|..|.|||||++.++.... .....+++.-.. ...... ....++.-.+...... .+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~t~~e~lLS 98 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD----PTSGEILIDGVDLRDLDLES----LRKNIAYVPQDPFLFSGTIRENILS 98 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC----CCCCEEEECCEEhhhcCHHH----HHhhEEEEcCCchhccchHHHHhhC
Confidence 346999999999999999999988752 223434432111 011111 1122222111100000 11
Q ss_pred HHHH-HHHHHHHhcCCcEEEEEecccCccc------ccccCCCCCCCcEEEEeCCchHHhhhcCCCcceec
Q 003753 221 DQGR-AAEIFRRLSNKKFALLLDDLRERIE------LSEAGVPVQNASKIVFTTIFEEVCSSMSVDWRFKV 284 (798)
Q Consensus 221 ~~~~-~~~l~~~l~~~r~LlVlDdv~~~~~------~~~~~~p~~~gs~iivTTR~~~v~~~~~~~~~~~l 284 (798)
..+. .-.+.+.+-.++-+++||+-....| +.++......+..||++|.+.+.... .+..+.+
T Consensus 99 ~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1111 2235566667788999998755432 11211111235678888887766543 3444443
No 364
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.05 E-value=0.084 Score=48.86 Aligned_cols=116 Identities=18% Similarity=0.184 Sum_probs=57.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCC---ccCHHHHHHHHHHHcCCC--CCCCccccCCHHH---
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAST---ELNIEKIQDVIRSRLGID--PDGDKWKNRDDQG--- 223 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~---~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~--- 223 (798)
..|-|++-.|.||||+|...+-+.. ...+ .+.++..-+ ......+++.+- .+... ..+..+...+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~--~~g~-~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL--GHGY-RVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--HCCC-eEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 4678888889999999988877762 2333 334433222 233333333330 01000 0000011111111
Q ss_pred ----HHHHHHHHhcC-CcEEEEEecccCcc--------cccccCCCCCCCcEEEEeCCchH
Q 003753 224 ----RAAEIFRRLSN-KKFALLLDDLRERI--------ELSEAGVPVQNASKIVFTTIFEE 271 (798)
Q Consensus 224 ----~~~~l~~~l~~-~r~LlVlDdv~~~~--------~~~~~~~p~~~gs~iivTTR~~~ 271 (798)
..+..++.+.. +-=|+|||++-... ++.++..-...+..+|+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 12233344444 44599999975431 22222111345679999999853
No 365
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.04 E-value=0.056 Score=57.78 Aligned_cols=45 Identities=24% Similarity=0.303 Sum_probs=36.9
Q ss_pred cccchhHHHHHHHHHhhc--------------CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIED--------------DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++|.++.++.+...+.. -..+-|.++|++|+|||++|+.+....
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 688999999888766632 124678999999999999999998886
No 366
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.03 E-value=0.19 Score=58.31 Aligned_cols=88 Identities=17% Similarity=0.222 Sum_probs=54.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCcc-CHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTEL-NIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF 229 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 229 (798)
.+|++++|+.|+||||.+.+++..... .+....+..++..... ...+-++...+.++.+.. ...+..++...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~-~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~----~~~~~~~l~~al~ 259 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVA-REGADQLALLTTDSFRIGALEQLRIYGRILGVPVH----AVKDAADLRFALA 259 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHH-HcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc----ccCCHHHHHHHHH
Confidence 479999999999999999998877621 2222355555543321 245566677777776552 2335555544443
Q ss_pred HHhcCCcEEEEEeccc
Q 003753 230 RRLSNKKFALLLDDLR 245 (798)
Q Consensus 230 ~~l~~~r~LlVlDdv~ 245 (798)
.++++ =++++|-.-
T Consensus 260 -~~~~~-D~VLIDTAG 273 (767)
T PRK14723 260 -ALGDK-HLVLIDTVG 273 (767)
T ss_pred -HhcCC-CEEEEeCCC
Confidence 44444 377778764
No 367
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.02 E-value=0.035 Score=60.52 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=37.6
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++||++.++.+...+..+ .-|.|.|++|+|||++|+.+....
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 5899999999998888654 368899999999999999998876
No 368
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.02 E-value=0.09 Score=57.33 Aligned_cols=97 Identities=15% Similarity=0.202 Sum_probs=59.4
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCcc-CHHHHHHHHHHHcCCCCCC--CccccCCHH---
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTEL-NIEKIQDVIRSRLGIDPDG--DKWKNRDDQ--- 222 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~~--- 222 (798)
..-..++|.|..|+|||||+.++..... .++-+.++++-+++.. .+.++..++...=.....- -...+....
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~~~--~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 3446899999999999999999877762 2333567777776554 4677777776532211000 000111111
Q ss_pred ---HHHHHHHHHh---cCCcEEEEEecccCc
Q 003753 223 ---GRAAEIFRRL---SNKKFALLLDDLRER 247 (798)
Q Consensus 223 ---~~~~~l~~~l---~~~r~LlVlDdv~~~ 247 (798)
..+..+.+++ +++.+|+++||+-..
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 2233455665 679999999998654
No 369
>PRK03839 putative kinase; Provisional
Probab=95.02 E-value=0.019 Score=55.15 Aligned_cols=23 Identities=43% Similarity=0.706 Sum_probs=21.4
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999886
No 370
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.02 E-value=0.081 Score=51.90 Aligned_cols=91 Identities=19% Similarity=0.327 Sum_probs=54.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc-cCHHHHHHHHHHHcCCCCCC--CccccCCHHHH---
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE-LNIEKIQDVIRSRLGIDPDG--DKWKNRDDQGR--- 224 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~--- 224 (798)
-.-++|.|..|+|||+|+.++.+... -+.++++.+++. ..+.++.+++...-.....- ....+......
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~-----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQD-----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCT-----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhccc-----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 36799999999999999999988762 255588888765 45677777664431100000 00011111111
Q ss_pred ---HHHHHHHh--cCCcEEEEEecccC
Q 003753 225 ---AAEIFRRL--SNKKFALLLDDLRE 246 (798)
Q Consensus 225 ---~~~l~~~l--~~~r~LlVlDdv~~ 246 (798)
.-.+.+++ +++.+|+++||+-.
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred hccchhhhHHHhhcCCceeehhhhhHH
Confidence 11222333 68999999999854
No 371
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.01 E-value=0.12 Score=56.87 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=38.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc-cCHHHHHHHHHHHcCCCC
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE-LNIEKIQDVIRSRLGIDP 211 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~ 211 (798)
..|++++|+.|+||||++.+++..... ++....+..++.... ....+-++...+.++.+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~-~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVM-RHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHH-hcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 479999999999999999999887621 222234555554331 223444555566666554
No 372
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.99 E-value=0.096 Score=55.26 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=42.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhh---cCCCCeEEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDM---SHKFGAVIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
...++-|+|.+|+||||++.+++.....- ...-..++||+....++.+.+. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 35799999999999999999987664110 0011379999998888877655 44555554
No 373
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.97 E-value=0.062 Score=57.95 Aligned_cols=102 Identities=23% Similarity=0.296 Sum_probs=55.4
Q ss_pred HHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHH--HHHHHHHcCCCCCCCc
Q 003753 138 RLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKI--QDVIRSRLGIDPDGDK 215 (798)
Q Consensus 138 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~--~~~i~~~l~~~~~~~~ 215 (798)
..+.+++.+.......+.|.|.||+|||+|.+.+.+... ..-. .+-++++.......+ -..+-+.++++.....
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~---~~~~-~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~ 84 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLR---SRGK-KVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNE 84 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhc---cccc-eEEEecchHHHHHhccCCcchHHhcCccccccc
Confidence 345556666556668899999999999999999988872 2222 333344443322222 2233444455442211
Q ss_pred cccCCHHHHHHHHHHHhcCCcEEEEEeccc
Q 003753 216 WKNRDDQGRAAEIFRRLSNKKFALLLDDLR 245 (798)
Q Consensus 216 ~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~ 245 (798)
.... ........++.++.-. +||+|.+.
T Consensus 85 ~~~~-~~~~~~~~~~~l~~~~-~lIiDEis 112 (364)
T PF05970_consen 85 KSQC-KISKNSRLRERLRKAD-VLIIDEIS 112 (364)
T ss_pred cccc-cccccchhhhhhhhhe-eeeccccc
Confidence 1111 1112223344444433 78889875
No 374
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.97 E-value=0.048 Score=59.16 Aligned_cols=94 Identities=20% Similarity=0.198 Sum_probs=51.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHc-----CCCCCCCccc--cCCHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRL-----GIDPDGDKWK--NRDDQ 222 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l-----~~~~~~~~~~--~~~~~ 222 (798)
.-..++|+|..|+|||||++.+.... .....+++..-.+..++.+.....+... +.-...+... ..-..
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 34689999999999999999887643 2223455554334445555444333322 1111100000 00011
Q ss_pred HHHHHHHHHh--cCCcEEEEEecccCc
Q 003753 223 GRAAEIFRRL--SNKKFALLLDDLRER 247 (798)
Q Consensus 223 ~~~~~l~~~l--~~~r~LlVlDdv~~~ 247 (798)
..+..+.+++ +++.+|+++||+-..
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchHHH
Confidence 1222334444 479999999998554
No 375
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.1 Score=52.13 Aligned_cols=91 Identities=20% Similarity=0.329 Sum_probs=60.2
Q ss_pred CcccchhHHHHHHHHHhh----------c--CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHH
Q 003753 130 NNIVGIESRLSEVWRYIE----------D--DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIE 197 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 197 (798)
+++.|.+..++.|.+... . ...+-|.++|++|.||+.||++|+.... . .|++||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn---S-----TFFSvSSS---- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN---S-----TFFSVSSS---- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC---C-----ceEEeehH----
Confidence 357799999998887651 1 2257899999999999999999988762 2 23444443
Q ss_pred HHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhc-CCcEEEEEecccC
Q 003753 198 KIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLS-NKKFALLLDDLRE 246 (798)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~r~LlVlDdv~~ 246 (798)
++.... +| ..+.++..|.+.-+ +++-+|.+|.++.
T Consensus 201 DLvSKW---mG-----------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 201 DLVSKW---MG-----------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred HHHHHH---hc-----------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 222211 11 23455555555544 5888999999874
No 376
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.93 E-value=0.2 Score=50.66 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=20.2
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+..|+|++|+|||+||..++-..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999987764
No 377
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.92 E-value=0.049 Score=62.38 Aligned_cols=74 Identities=15% Similarity=0.261 Sum_probs=57.1
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
.++|.++.++.|...+... +.+.++|.+|+||||+|+.+.+... ...++..+|..-+ ..+...+++.+..++|.
T Consensus 32 ~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~np-~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 32 QVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPNP-EDPNNPKIRTVPAGKGK 105 (637)
T ss_pred HcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeCC-CcchHHHHHHHHHhcCH
Confidence 6889999999888877655 4788999999999999999988763 3456788886653 33677777777766653
No 378
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.92 E-value=0.022 Score=55.12 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=23.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+.++|.|.|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998765
No 379
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.92 E-value=0.041 Score=49.01 Aligned_cols=73 Identities=18% Similarity=0.127 Sum_probs=44.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFR 230 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 230 (798)
.+-|.|.|-+|+||||+|.+++... ..-|+++|+-..-..+....=+ +.+....|++.+...|..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~--------~~~~i~isd~vkEn~l~~gyDE-------~y~c~i~DEdkv~D~Le~ 71 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT--------GLEYIEISDLVKENNLYEGYDE-------EYKCHILDEDKVLDELEP 71 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh--------CCceEehhhHHhhhcchhcccc-------cccCccccHHHHHHHHHH
Confidence 3568899999999999999998544 1246666654322222221111 112234577788888877
Q ss_pred HhcCCcEE
Q 003753 231 RLSNKKFA 238 (798)
Q Consensus 231 ~l~~~r~L 238 (798)
.+.+..++
T Consensus 72 ~m~~Gg~I 79 (176)
T KOG3347|consen 72 LMIEGGNI 79 (176)
T ss_pred HHhcCCcE
Confidence 77664443
No 380
>PRK06217 hypothetical protein; Validated
Probab=94.91 E-value=0.039 Score=53.12 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.7
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..|.|.|.+|+||||+|+++....
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998876
No 381
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.90 E-value=0.021 Score=54.39 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=23.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+|+|-||-|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999987
No 382
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.89 E-value=0.075 Score=57.66 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=54.0
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCcc-CHHHHHHHHHHHcCCCCCC--CccccCCHH---
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTEL-NIEKIQDVIRSRLGIDPDG--DKWKNRDDQ--- 222 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~~--- 222 (798)
..-..++|+|..|+|||||++++++.. ..+.++++-+++.. .+.+...+.+..-+....- ....+....
T Consensus 156 ~~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 156 CRGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRR 230 (442)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHH
Confidence 345689999999999999999988765 12455556565543 3555555444432211100 000111111
Q ss_pred ---HHHHHHHHHh--cCCcEEEEEecccCc
Q 003753 223 ---GRAAEIFRRL--SNKKFALLLDDLRER 247 (798)
Q Consensus 223 ---~~~~~l~~~l--~~~r~LlVlDdv~~~ 247 (798)
..+..+.+++ +++.+|+++||+-..
T Consensus 231 ~a~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 231 QAAYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 1222344555 579999999998544
No 383
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.88 E-value=0.56 Score=49.20 Aligned_cols=49 Identities=24% Similarity=0.235 Sum_probs=35.2
Q ss_pred ceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHH
Q 003753 281 RFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLAL 329 (798)
Q Consensus 281 ~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 329 (798)
++++++++.+|+..++.-+....-......-+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999888765543322333456677777778988543
No 384
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.86 E-value=0.26 Score=52.39 Aligned_cols=91 Identities=18% Similarity=0.226 Sum_probs=53.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCC-ccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAST-ELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 228 (798)
.+.||-.+|.-|.||||.|..+++... +..+ .+.-|++.. .+..-+-++.++++.+.+.-+. ....++.+.+..-
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lk--k~~~-kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~-~~~~~Pv~Iak~a 174 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLK--KKGK-KVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS-GTEKDPVEIAKAA 174 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHH--HcCC-ceEEEecccCChHHHHHHHHHHHHcCCceecC-CCCCCHHHHHHHH
Confidence 467999999999999999999999883 2222 233333222 2235566778888887765322 1233444444443
Q ss_pred HHHhcCCc-EEEEEecc
Q 003753 229 FRRLSNKK-FALLLDDL 244 (798)
Q Consensus 229 ~~~l~~~r-~LlVlDdv 244 (798)
.+..+... =++|+|-.
T Consensus 175 l~~ak~~~~DvvIvDTA 191 (451)
T COG0541 175 LEKAKEEGYDVVIVDTA 191 (451)
T ss_pred HHHHHHcCCCEEEEeCC
Confidence 33333332 35555543
No 385
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.81 E-value=0.22 Score=53.78 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=21.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
-.+++|+|++|+||||||+.+..-.
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHccc
Confidence 4689999999999999999986544
No 386
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.79 E-value=0.18 Score=50.43 Aligned_cols=53 Identities=23% Similarity=0.231 Sum_probs=34.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
..++.|.|..|+||||+|.++..... +.. ..+++++... +..++.+.+ .+++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g-~~~~yi~~e~--~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFL--QNG-YSVSYVSTQL--TTTEFIKQM-MSLGY 76 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEeCCC--CHHHHHHHH-HHhCC
Confidence 46999999999999999877666542 222 4456666333 456666665 44544
No 387
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.78 E-value=0.27 Score=52.09 Aligned_cols=89 Identities=22% Similarity=0.273 Sum_probs=50.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc-cCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE-LNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 228 (798)
..++|.++|+.|+||||-...++.++. ....=..+..|+...- ....+-++.-++-++.+.. ...+..+....+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~----vv~~~~el~~ai 276 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE----VVYSPKELAEAI 276 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE----EecCHHHHHHHH
Confidence 368999999999999865555555542 1233345666655432 2345556666777777763 334444444433
Q ss_pred HHHhcCCcEEEEEeccc
Q 003753 229 FRRLSNKKFALLLDDLR 245 (798)
Q Consensus 229 ~~~l~~~r~LlVlDdv~ 245 (798)
. .+++. =++.+|-+-
T Consensus 277 ~-~l~~~-d~ILVDTaG 291 (407)
T COG1419 277 E-ALRDC-DVILVDTAG 291 (407)
T ss_pred H-HhhcC-CEEEEeCCC
Confidence 3 23333 344445543
No 388
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.74 E-value=0.11 Score=52.63 Aligned_cols=98 Identities=13% Similarity=0.102 Sum_probs=59.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhh-hcCCCCeEEEEEcCCcc-CHHHHHHHHHHHcCCCCCCC--ccccCCH----
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSD-MSHKFGAVIMVKASTEL-NIEKIQDVIRSRLGIDPDGD--KWKNRDD---- 221 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~--~~~~~~~---- 221 (798)
.-..++|.|-.|+|||+|+.++.++... .+.+-+.++++-+++.. .+.++..++.+.=.....-- ...+...
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3467899999999999999998877520 12335778888887765 47777777665421111000 0011111
Q ss_pred --HHHHHHHHHHhc---CCcEEEEEecccCc
Q 003753 222 --QGRAAEIFRRLS---NKKFALLLDDLRER 247 (798)
Q Consensus 222 --~~~~~~l~~~l~---~~r~LlVlDdv~~~ 247 (798)
...+..+.++++ ++++|+++||+-..
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 111223445553 68999999998654
No 389
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.74 E-value=0.022 Score=49.29 Aligned_cols=23 Identities=48% Similarity=0.732 Sum_probs=20.3
Q ss_pred EEEEecCCchHHHHHHHHHHHhh
Q 003753 154 IGLYGVRGVGKSTLLKQLNDTFS 176 (798)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~~ 176 (798)
|.|+|.+|+|||++|+.++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999888773
No 390
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.73 E-value=0.15 Score=57.30 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=42.7
Q ss_pred HHHHHHhhc--CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCC
Q 003753 140 SEVWRYIED--DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGID 210 (798)
Q Consensus 140 ~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 210 (798)
.++-+.|.. ..-+++.|.|.+|+|||||+.++..... ..-+.++++...+ +..++.... +.++.+
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~ 316 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEE--SRAQLLRNA-YSWGID 316 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeC--CHHHHHHHH-HHcCCC
Confidence 444455543 2457999999999999999999988763 2334566665444 455555553 555543
No 391
>PRK14527 adenylate kinase; Provisional
Probab=94.72 E-value=0.046 Score=53.08 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+|.|+|++|+||||+|+.++..+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998776
No 392
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.71 E-value=0.067 Score=54.43 Aligned_cols=23 Identities=48% Similarity=0.689 Sum_probs=21.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.|.++|.+|+||||+|+.+....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999887
No 393
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.71 E-value=0.071 Score=49.86 Aligned_cols=112 Identities=22% Similarity=0.319 Sum_probs=60.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCcc--CHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTEL--NIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 228 (798)
-.+++|+|..|.|||||++.+.... ......+++.-.... .... ....++...+ -.... ...-.+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~q----lS~G~-~~r~~l 91 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEE----LRRRIGYVPQ----LSGGQ-RQRVAL 91 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHH----HHhceEEEee----CCHHH-HHHHHH
Confidence 3699999999999999999998765 233455555322111 1111 1222222110 01112 222335
Q ss_pred HHHhcCCcEEEEEecccCccccc------ccCCC-CCCCcEEEEeCCchHHhhh
Q 003753 229 FRRLSNKKFALLLDDLRERIELS------EAGVP-VQNASKIVFTTIFEEVCSS 275 (798)
Q Consensus 229 ~~~l~~~r~LlVlDdv~~~~~~~------~~~~p-~~~gs~iivTTR~~~v~~~ 275 (798)
...+...+-++++|+.-...|.. +.... ...+..++++|-+.+....
T Consensus 92 ~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 92 ARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 55666677889999876543211 11111 1235678888877766544
No 394
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.70 E-value=0.082 Score=51.62 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=24.2
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
....+|+|+|++|+||||+|+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998876
No 395
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.69 E-value=0.082 Score=57.15 Aligned_cols=94 Identities=18% Similarity=0.199 Sum_probs=55.0
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCcc-CHHHHHHHHHHHcCCCCCC--CccccCCHH---
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTEL-NIEKIQDVIRSRLGIDPDG--DKWKNRDDQ--- 222 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~~--- 222 (798)
..-..++|+|..|+|||||++.+++.. ..+.++.+-+++.. .+.++...++..-+....- ....+....
T Consensus 160 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (444)
T PRK08972 160 GKGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRL 234 (444)
T ss_pred cCCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHH
Confidence 344689999999999999999987643 22566666666554 3566666654432211100 000111111
Q ss_pred ---HHHHHHHHHh--cCCcEEEEEecccCc
Q 003753 223 ---GRAAEIFRRL--SNKKFALLLDDLRER 247 (798)
Q Consensus 223 ---~~~~~l~~~l--~~~r~LlVlDdv~~~ 247 (798)
..+..+.+++ +++.+|+++||+-..
T Consensus 235 ~a~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 235 KGCETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 1122344554 579999999998554
No 396
>PRK00625 shikimate kinase; Provisional
Probab=94.67 E-value=0.025 Score=53.58 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.9
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.|.++||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 397
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.4 Score=54.37 Aligned_cols=92 Identities=20% Similarity=0.271 Sum_probs=61.3
Q ss_pred cccchhHHHHHHHHHhhc---------C---CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHH
Q 003753 131 NIVGIESRLSEVWRYIED---------D---GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEK 198 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~---------~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 198 (798)
++=|.++.+.+|.+-+.- . ..+=|.++|++|.|||-+|++|+.... .-|++|..+ +
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs--------L~FlSVKGP----E 740 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS--------LNFLSVKGP----E 740 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce--------eeEEeecCH----H
Confidence 455899999999887622 2 245688999999999999999988872 244555443 1
Q ss_pred HHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCc
Q 003753 199 IQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRER 247 (798)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~ 247 (798)
++..- ...+++.+.+...+.=.-++++|.||.+++.
T Consensus 741 LLNMY-------------VGqSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 741 LLNMY-------------VGQSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHH-------------hcchHHHHHHHHHHhhccCCeEEEecccccc
Confidence 21111 2233444444445555569999999998864
No 398
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.65 E-value=0.087 Score=57.31 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=35.3
Q ss_pred cccchhHHHHHHHHHhhc-------C---------CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIED-------D---------GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-------~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++|.+..++.+...+.. . ..+.+.++|++|+|||++|+.++...
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 689999999988655411 0 12568999999999999999998765
No 399
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.64 E-value=0.069 Score=53.71 Aligned_cols=61 Identities=30% Similarity=0.414 Sum_probs=43.6
Q ss_pred HHHHHHh--hcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHH
Q 003753 140 SEVWRYI--EDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQD 201 (798)
Q Consensus 140 ~~l~~~L--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 201 (798)
.+++..+ ..++..+|+|.|.+|+|||||.-.+...+. .+.+==.++-|+-|.+++--.++-
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~-~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELR-ERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHH-HCCcEEEEEEECCCCCCCCccccc
Confidence 3444444 336788999999999999999999888873 244445677777777776544443
No 400
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.63 E-value=0.09 Score=60.42 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=51.6
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
+++|.++.++.+...+.... -+.++|+.|+||||+|+.+.+... ...|..++++.-+ ..+...+++.+..+++.
T Consensus 19 ~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~n~-~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 19 QVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYPNP-EDPNMPRIVEVPAGEGR 92 (608)
T ss_pred hccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEeCC-CCCchHHHHHHHHhhch
Confidence 68999999988887776553 555999999999999999998773 2344444443322 22455557777766653
No 401
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.62 E-value=0.18 Score=49.14 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.5
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
++++|+|+.|.|||||++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999987543
No 402
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.61 E-value=0.11 Score=49.95 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.-.+++|+|..|.|||||++.+....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 403
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.61 E-value=0.093 Score=57.06 Aligned_cols=96 Identities=19% Similarity=0.209 Sum_probs=59.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCcc-CHHHHHHHHHHHcCCCCCC--CccccCCH-----
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTEL-NIEKIQDVIRSRLGIDPDG--DKWKNRDD----- 221 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~----- 221 (798)
.-..++|.|.+|+|||+|+.++..... +.+-+.++++-+++.. .+.++..++...=.....- ....+...
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~--~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV--GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 446899999999999999999877752 2344788888887655 4666777665432111000 00011111
Q ss_pred -HHHHHHHHHHhc---CCcEEEEEecccCc
Q 003753 222 -QGRAAEIFRRLS---NKKFALLLDDLRER 247 (798)
Q Consensus 222 -~~~~~~l~~~l~---~~r~LlVlDdv~~~ 247 (798)
...+..+.++++ ++.+|+++||+-..
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 122334555654 58999999998654
No 404
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.60 E-value=0.14 Score=55.64 Aligned_cols=97 Identities=16% Similarity=0.211 Sum_probs=59.1
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCcc-CHHHHHHHHHHHcCCCCCC--CccccCCHH---
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTEL-NIEKIQDVIRSRLGIDPDG--DKWKNRDDQ--- 222 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~~--- 222 (798)
..-..++|.|..|+|||||+.++..... .++-+.++++-+++.. .+.+++.++...=.....- ....+....
T Consensus 141 g~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 141 AKGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred ccCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 3446899999999999999999887752 2334567777776553 4677777775432111000 000111111
Q ss_pred ---HHHHHHHHHh---cCCcEEEEEecccCc
Q 003753 223 ---GRAAEIFRRL---SNKKFALLLDDLRER 247 (798)
Q Consensus 223 ---~~~~~l~~~l---~~~r~LlVlDdv~~~ 247 (798)
..+..+.+++ +++.+|+++||+-..
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 1233455665 468999999998654
No 405
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.58 E-value=0.11 Score=60.85 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=37.5
Q ss_pred cccchhHHHHHHHHHhhc---------CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIED---------DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++|.++.++.|.+.+.. .....+.++|+.|+|||++|+.++...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 588999999999888852 123578899999999999999998776
No 406
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.56 E-value=0.047 Score=55.99 Aligned_cols=57 Identities=25% Similarity=0.444 Sum_probs=35.1
Q ss_pred HHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHH
Q 003753 140 SEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQ 200 (798)
Q Consensus 140 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 200 (798)
..+++.+...+ +-+.++|+.|+|||++++....... ...| .+.-++.+...+...++
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~--~~~~-~~~~~~~s~~Tts~~~q 79 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLD--SDKY-LVITINFSAQTTSNQLQ 79 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCST--TCCE-EEEEEES-TTHHHHHHH
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCC--cccc-ceeEeeccCCCCHHHHH
Confidence 44555555554 4568999999999999999876542 2222 24445566554444443
No 407
>PF13245 AAA_19: Part of AAA domain
Probab=94.56 E-value=0.11 Score=41.61 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=18.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+.+++.|.|.+|.|||+++.+.....
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44688889999999995555444433
No 408
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.2 Score=48.49 Aligned_cols=59 Identities=12% Similarity=0.197 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCcEEEEEecccCcccccccCCC-------CCCCcEEEEeCCchHHhhhcCCCcce
Q 003753 224 RAAEIFRRLSNKKFALLLDDLRERIELSEAGVP-------VQNASKIVFTTIFEEVCSSMSVDWRF 282 (798)
Q Consensus 224 ~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~~p-------~~~gs~iivTTR~~~v~~~~~~~~~~ 282 (798)
....|.+.+--++-+.|||..++-.|.+.+..- ...|+-+++.|-...++.....+.+|
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 334555555667889999999887665544211 45677788888888888876555444
No 409
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.51 E-value=0.22 Score=47.82 Aligned_cols=123 Identities=17% Similarity=0.220 Sum_probs=69.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcC-------------------Ccc----------------
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAS-------------------TEL---------------- 194 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs-------------------~~~---------------- 194 (798)
.-.|++|+|++|+|||||.+.+..-. ..=.+.+|+.-. +.|
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE----~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE----EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc----CCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 34699999999999999999886543 122344555321 111
Q ss_pred ---------CHHHHHHHHHHHcCCCCCCCcccc--CCHHHHHHHHHHHhcCCcEEEEEecccCcccccc------cCCC-
Q 003753 195 ---------NIEKIQDVIRSRLGIDPDGDKWKN--RDDQGRAAEIFRRLSNKKFALLLDDLRERIELSE------AGVP- 256 (798)
Q Consensus 195 ---------~~~~~~~~i~~~l~~~~~~~~~~~--~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~------~~~p- 256 (798)
..++...++++..++....+.+.. ..-++..-.|.+.|.=++-++.||..-+.-|-+- ....
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L 182 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence 123344444555555433222211 1222223346677777888999999866532221 1111
Q ss_pred CCCCcEEEEeCCchHHhhhc
Q 003753 257 VQNASKIVFTTIFEEVCSSM 276 (798)
Q Consensus 257 ~~~gs~iivTTR~~~v~~~~ 276 (798)
...|-..|+.|-....|...
T Consensus 183 A~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 183 AEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HHcCCeEEEEechhHHHHHh
Confidence 45677777777777666654
No 410
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.51 E-value=0.12 Score=61.95 Aligned_cols=105 Identities=20% Similarity=0.336 Sum_probs=61.1
Q ss_pred CcccchhHHHHHHHHHhhc-------C--CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIED-------D--GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQ 200 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 200 (798)
..++|.+..++.+.+.+.. . ...++.++|+.|+|||+||+.+++..- ..-...+-++.+.-.+...+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~---~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF---GSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc---CCccceEEEEchhccccccHH
Confidence 3688999999999888742 1 134677899999999999999987651 112334455554432222221
Q ss_pred HHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCc-EEEEEecccCc
Q 003753 201 DVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKK-FALLLDDLRER 247 (798)
Q Consensus 201 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r-~LlVlDdv~~~ 247 (798)
+ -+|.++. +...+. ...+.+.++.++ -+++||+++..
T Consensus 586 ~----l~g~~~g---yvg~~~---~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 586 K----LIGSPPG---YVGYNE---GGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred H----hcCCCCc---ccCcCc---cchHHHHHHhCCCeEEEECChhhC
Confidence 1 1232221 111111 113445555555 58889999764
No 411
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.47 E-value=0.12 Score=48.86 Aligned_cols=81 Identities=20% Similarity=0.245 Sum_probs=47.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRL 232 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 232 (798)
++.|.|..|+|||++|.++.... ...++++.-.+.++.+ ..+.|...-...+ ......+....+.+.+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~e-m~~rI~~H~~~R~-----~~w~t~E~~~~l~~~l 68 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDDE-MAERIARHRKRRP-----AHWRTIETPRDLVSAL 68 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCHH-HHHHHHHHHHhCC-----CCceEeecHHHHHHHH
Confidence 36799999999999999986542 2356777767766653 4445444332222 1222223333344444
Q ss_pred cC--CcEEEEEeccc
Q 003753 233 SN--KKFALLLDDLR 245 (798)
Q Consensus 233 ~~--~r~LlVlDdv~ 245 (798)
.. +.-.+++|.+-
T Consensus 69 ~~~~~~~~VLIDclt 83 (169)
T cd00544 69 KELDPGDVVLIDCLT 83 (169)
T ss_pred HhcCCCCEEEEEcHh
Confidence 21 23379999863
No 412
>PRK05973 replicative DNA helicase; Provisional
Probab=94.45 E-value=0.24 Score=49.29 Aligned_cols=49 Identities=14% Similarity=0.057 Sum_probs=34.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVI 203 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 203 (798)
.-.++.|.|.+|+|||++|.++..... +. -..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~~-Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--KS-GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--hc-CCeEEEEEEeCC--HHHHHHHH
Confidence 346899999999999999999877662 22 345666655443 45555554
No 413
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.45 E-value=0.027 Score=53.95 Aligned_cols=23 Identities=43% Similarity=0.693 Sum_probs=21.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 414
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.44 E-value=0.029 Score=49.28 Aligned_cols=27 Identities=44% Similarity=0.619 Sum_probs=18.9
Q ss_pred EEEEecCCchHHHHHHHHHHHhhhhcCCCC
Q 003753 154 IGLYGVRGVGKSTLLKQLNDTFSDMSHKFG 183 (798)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~ 183 (798)
|.|+|.+|+||||+|+.++... ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCcee
Confidence 6789999999999999999886 45564
No 415
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.43 E-value=0.026 Score=55.23 Aligned_cols=23 Identities=35% Similarity=0.666 Sum_probs=20.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+|+|.|.+|+||||||+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997765
No 416
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.43 E-value=0.08 Score=58.42 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=52.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEE-EEcCCcc-CHHHHHHHHHHHcCCCC-CCCccccCCHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIM-VKASTEL-NIEKIQDVIRSRLGIDP-DGDKWKNRDDQGRAA 226 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w-v~vs~~~-~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~ 226 (798)
.-....|+|.+|+|||||++.+.+... ..+-++.++ +-|.+.. .+.+..+.+-.++-... +.+..........+-
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 345789999999999999999998763 334455433 3444433 34444333311111111 000000011122223
Q ss_pred HHHHHh--cCCcEEEEEecccCc
Q 003753 227 EIFRRL--SNKKFALLLDDLRER 247 (798)
Q Consensus 227 ~l~~~l--~~~r~LlVlDdv~~~ 247 (798)
.+.+++ .++.+||++|++-..
T Consensus 493 ~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCchHH
Confidence 344444 579999999998543
No 417
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.43 E-value=0.027 Score=54.30 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.9
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
||.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998765
No 418
>PRK15453 phosphoribulokinase; Provisional
Probab=94.42 E-value=0.24 Score=50.19 Aligned_cols=82 Identities=12% Similarity=0.064 Sum_probs=46.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCC--ccCHHHHHHHHH--HHcCCCCCCCccccCCHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAST--ELNIEKIQDVIR--SRLGIDPDGDKWKNRDDQGRA 225 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~--~~~~~~~~~~i~--~~l~~~~~~~~~~~~~~~~~~ 225 (798)
...+|+|.|.+|+||||+|+.+.+.+. ..-.....++... .++..+.-..+. +.-+...+.......+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~---~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR---RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh---hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 457999999999999999999987762 1111233343322 123333333222 222222211113556777777
Q ss_pred HHHHHHhcC
Q 003753 226 AEIFRRLSN 234 (798)
Q Consensus 226 ~~l~~~l~~ 234 (798)
+.++....+
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 777776554
No 419
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.41 E-value=0.039 Score=52.81 Aligned_cols=23 Identities=35% Similarity=0.754 Sum_probs=21.4
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998887
No 420
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.39 E-value=0.14 Score=56.54 Aligned_cols=87 Identities=24% Similarity=0.294 Sum_probs=50.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCcc-ccCCHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKW-KNRDDQGRAAEIF 229 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~l~ 229 (798)
-.++.|.|.+|+|||||+.+++.... ..-..++|++..+. ..++.. -++.++...+.... ...+.+.+...+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 46999999999999999999988763 22346788876543 333332 25556653321000 1123333333332
Q ss_pred HHhcCCcEEEEEecccC
Q 003753 230 RRLSNKKFALLLDDLRE 246 (798)
Q Consensus 230 ~~l~~~r~LlVlDdv~~ 246 (798)
..+.-++|+|.+..
T Consensus 154 ---~~~~~lVVIDSIq~ 167 (446)
T PRK11823 154 ---EEKPDLVVIDSIQT 167 (446)
T ss_pred ---hhCCCEEEEechhh
Confidence 22455788888754
No 421
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.39 E-value=0.043 Score=51.95 Aligned_cols=42 Identities=26% Similarity=0.234 Sum_probs=33.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhc-CCCCeEEEEEcCCccC
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMS-HKFGAVIMVKASTELN 195 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~vs~~~~ 195 (798)
..++.+.|+.|+|||.+|+.++... . +.....+-++++.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l---~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELL---FVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHH---T-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHh---ccCCccchHHHhhhcccc
Confidence 4678899999999999999999887 3 4556677777766544
No 422
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.37 E-value=0.036 Score=52.83 Aligned_cols=25 Identities=36% Similarity=0.388 Sum_probs=22.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...|.|+|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 423
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.36 E-value=0.045 Score=53.92 Aligned_cols=32 Identities=25% Similarity=0.580 Sum_probs=27.9
Q ss_pred HHhhcCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 144 RYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 144 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+.+.+.++++|+++|..|+|||||..++.+..
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34556789999999999999999999998875
No 424
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.35 E-value=0.14 Score=54.94 Aligned_cols=74 Identities=20% Similarity=0.223 Sum_probs=49.1
Q ss_pred cccchhHHHHHHHHHhhc--------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCC---CeEEEEEc-CC
Q 003753 131 NIVGIESRLSEVWRYIED--------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKF---GAVIMVKA-ST 192 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~v-s~ 192 (798)
.++|.+..++.+..++.. -..+.|.++|+.|+|||++|+.+.... ...| +...|... -.
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l---~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFTEVGYV 92 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh---CChheeecchhhccCCcc
Confidence 689999999999887732 014678999999999999999998876 2222 32222221 12
Q ss_pred ccCHHHHHHHHHHHc
Q 003753 193 ELNIEKIQDVIRSRL 207 (798)
Q Consensus 193 ~~~~~~~~~~i~~~l 207 (798)
..+.+...+.+.+..
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235556666665543
No 425
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.35 E-value=0.021 Score=55.06 Aligned_cols=117 Identities=19% Similarity=0.180 Sum_probs=56.3
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRL 232 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 232 (798)
++.|+|..|.||||+.+.+.-..- -.+-.+.+|-.-.. -.....+...++.... ..............+...+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~--la~~G~~v~a~~~~----~~~~d~il~~~~~~d~-~~~~~s~fs~~~~~l~~~l 73 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVI--MAQIGSFVPAESAE----LPVFDRIFTRIGASDS-LAQGLSTFMVEMKETANIL 73 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH--HHHhCCCeeehheE----ecccceEEEEeCCCCc-hhccccHHHHHHHHHHHHH
Confidence 478999999999999999873321 01111111110000 0000111111111110 0001112223333455555
Q ss_pred cC--CcEEEEEecccCccccc---cc---CCC--CC-CCcEEEEeCCchHHhhhc
Q 003753 233 SN--KKFALLLDDLRERIELS---EA---GVP--VQ-NASKIVFTTIFEEVCSSM 276 (798)
Q Consensus 233 ~~--~r~LlVlDdv~~~~~~~---~~---~~p--~~-~gs~iivTTR~~~v~~~~ 276 (798)
.. ++-|+++|..-...+.. .+ .+. .. .++.+|++|.+.++....
T Consensus 74 ~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 74 KNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLA 128 (185)
T ss_pred HhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHh
Confidence 54 88999999975442211 11 011 22 478899999988876543
No 426
>PTZ00494 tuzin-like protein; Provisional
Probab=94.34 E-value=0.97 Score=48.29 Aligned_cols=158 Identities=16% Similarity=0.111 Sum_probs=96.0
Q ss_pred CcccchhHHHHHHHHHhhc---CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIED---DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSR 206 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 206 (798)
..+|.|+.+-..+.+.|.+ ..++++.+.|.-|.||++|.+....... -..++|.+... ++-++.|.+.
T Consensus 371 ~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~------~paV~VDVRg~---EDtLrsVVKA 441 (664)
T PTZ00494 371 AFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG------VALVHVDVGGT---EDTLRSVVRA 441 (664)
T ss_pred ccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC------CCeEEEEecCC---cchHHHHHHH
Confidence 3689999888888777754 5689999999999999999998766541 24567777655 4567888899
Q ss_pred cCCCCCCCccccCCHHHHHH----HHHHHhcCCcEEEEEecccCccccccc-----CCC-CCCCcEEEEeCCchHHhhh-
Q 003753 207 LGIDPDGDKWKNRDDQGRAA----EIFRRLSNKKFALLLDDLRERIELSEA-----GVP-VQNASKIVFTTIFEEVCSS- 275 (798)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~----~l~~~l~~~r~LlVlDdv~~~~~~~~~-----~~p-~~~gs~iivTTR~~~v~~~- 275 (798)
++.+.-+ .-.|.-+.+. .-.....++.-+||+- +.+-.++.++ .+- ...-|+|++---.+.+.-.
T Consensus 442 LgV~nve---~CGDlLdFI~ea~~~A~~~~~g~~P~lVlk-LREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n 517 (664)
T PTZ00494 442 LGVSNVE---VCGDLLGFVEEAMRGATVKASDGVPFLVMR-LREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLN 517 (664)
T ss_pred hCCCChh---hhccHHHHHHHHHHHHHHhcCCCCCEEEEE-eccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhh
Confidence 9887621 1122222221 1222244555566653 1221222221 111 3345677765444433211
Q ss_pred --cCCCcceeccCCChHHHHHHHHHhc
Q 003753 276 --MSVDWRFKVDYLPQEEAWNLFRLKV 300 (798)
Q Consensus 276 --~~~~~~~~l~~L~~~~a~~Lf~~~~ 300 (798)
..--..|-+++++.++|.+.-.+..
T Consensus 518 ~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 518 VSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ccCccceeEecCCcCHHHHHHHHhccc
Confidence 1222468899999999998887664
No 427
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.66 Score=45.46 Aligned_cols=53 Identities=25% Similarity=0.359 Sum_probs=40.2
Q ss_pred ccccCCC--CcccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 123 VEILPKE--NNIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 123 ~~~~~~~--~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+++.|.+ +++=|-++.++++++.+-- ..++-+..+|++|.|||-+|++.+..-
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 3445554 3566899999999998711 235678899999999999999887664
No 428
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.31 E-value=0.065 Score=55.73 Aligned_cols=75 Identities=23% Similarity=0.338 Sum_probs=53.9
Q ss_pred cccchhHHHHHHHHHhhc------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcC----Ccc---CHH
Q 003753 131 NIVGIESRLSEVWRYIED------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAS----TEL---NIE 197 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs----~~~---~~~ 197 (798)
.++|.++.++++++.+.. ..-+|+.++|+.|.||||||..+.+-.+ .+ .+|.-.. +.+ =..
T Consensus 62 ~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le---~y---~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE---EY---PIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred cccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh---eE---EEEEecCCccccChhhhCCH
Confidence 699999999999999943 4568999999999999999999987762 22 3333211 111 145
Q ss_pred HHHHHHHHHcCCCC
Q 003753 198 KIQDVIRSRLGIDP 211 (798)
Q Consensus 198 ~~~~~i~~~l~~~~ 211 (798)
+.-+.+.+.++...
T Consensus 136 ~~r~~~~~~~~~~i 149 (358)
T PF08298_consen 136 ELRREFEDELGIRI 149 (358)
T ss_pred hHHHHHHHHhCccc
Confidence 56666777777644
No 429
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.30 E-value=0.13 Score=51.59 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=35.6
Q ss_pred cccchhHHHHHHHHHhhc-------CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIED-------DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++|..-.++.++..+.+ ..+-|++.+|..|+||.-+++.+++..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 466777667777776633 346699999999999999999998876
No 430
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.29 E-value=0.22 Score=50.04 Aligned_cols=81 Identities=12% Similarity=0.058 Sum_probs=45.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc--cCHHHHHHHHHHHc--CCCCCCCccccCCHHHHHHHH
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE--LNIEKIQDVIRSRL--GIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~~~~~l 228 (798)
+|+|.|.+|+||||+|+.+...... .+ ..+..++...- .+-......+..+. +...+.......+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~-~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR-EG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh-cC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 5899999999999999999887731 11 12334432221 22223322333322 222211112556777777777
Q ss_pred HHHhcCCc
Q 003753 229 FRRLSNKK 236 (798)
Q Consensus 229 ~~~l~~~r 236 (798)
+..-+++.
T Consensus 78 ~~L~~g~~ 85 (277)
T cd02029 78 RTYGETGR 85 (277)
T ss_pred HHHHcCCC
Confidence 77766643
No 431
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.28 E-value=0.16 Score=53.39 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEecCCchHHHHHHHHHHHh
Q 003753 154 IGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+.+.|++|+||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998876
No 432
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.25 E-value=0.037 Score=53.11 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.7
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.+++|+|+.|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998775
No 433
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.25 E-value=0.18 Score=47.56 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=37.6
Q ss_pred ccchhHHHHHHHHHhhc--CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcC
Q 003753 132 IVGIESRLSEVWRYIED--DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAS 191 (798)
Q Consensus 132 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs 191 (798)
+||....+.++++.+.. ....-|.|+|..|+||+.+|+.+++.-. ..-...+-|+++
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~---r~~~pfi~vnc~ 59 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP---RKNGPFISVNCA 59 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST---TTTS-EEEEETT
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh---cccCCeEEEehh
Confidence 47888888888887744 2335666999999999999999988542 222333445555
No 434
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.25 E-value=0.084 Score=57.21 Aligned_cols=94 Identities=20% Similarity=0.198 Sum_probs=51.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCC--ccccCCHH-----
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGD--KWKNRDDQ----- 222 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~----- 222 (798)
.-..++|+|..|+|||||++.+.... .....++...-.+...+.++....+..-+....-- ...+....
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~----~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT----DADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC----CCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 44689999999999999999887654 22223333222333345556555544322111000 00111111
Q ss_pred -HHHHHHHHHh--cCCcEEEEEecccCc
Q 003753 223 -GRAAEIFRRL--SNKKFALLLDDLRER 247 (798)
Q Consensus 223 -~~~~~l~~~l--~~~r~LlVlDdv~~~ 247 (798)
..+..+.+++ +++.+|+++||+-..
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1222344555 578999999998554
No 435
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.62 Score=45.44 Aligned_cols=45 Identities=29% Similarity=0.429 Sum_probs=35.4
Q ss_pred cccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
++=|.|-.++++.+..+- +.++-|.++|++|.|||-||++|+++-
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 344777777777766521 456788999999999999999999986
No 436
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.25 E-value=0.046 Score=53.29 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=22.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.-.+++|+|.+|+|||||++.+..-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 34699999999999999999997765
No 437
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.22 Score=52.51 Aligned_cols=99 Identities=22% Similarity=0.309 Sum_probs=60.8
Q ss_pred HHHHHHHhhcC--CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCc-
Q 003753 139 LSEVWRYIEDD--GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDK- 215 (798)
Q Consensus 139 ~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~- 215 (798)
+.++...|..+ .-.+|.|=|-+|+|||||..+++.+.. +.- .+.||+-.+. ..++ +--++.++.+...-.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l 151 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEES--LQQI-KLRADRLGLPTNNLYL 151 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcC--HHHH-HHHHHHhCCCccceEE
Confidence 34455555432 236999999999999999999999883 222 7777765443 3222 334566776542111
Q ss_pred cccCCHHHHHHHHHHHhcCCcEEEEEecccCc
Q 003753 216 WKNRDDQGRAAEIFRRLSNKKFALLLDDLRER 247 (798)
Q Consensus 216 ~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~ 247 (798)
....+.+...+.+.+ .++-++|+|.+...
T Consensus 152 ~aEt~~e~I~~~l~~---~~p~lvVIDSIQT~ 180 (456)
T COG1066 152 LAETNLEDIIAELEQ---EKPDLVVIDSIQTL 180 (456)
T ss_pred ehhcCHHHHHHHHHh---cCCCEEEEecccee
Confidence 123344444444433 57889999998654
No 438
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.22 E-value=0.055 Score=52.10 Aligned_cols=38 Identities=42% Similarity=0.558 Sum_probs=31.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcC
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAS 191 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs 191 (798)
.+++.|+|+.|+|||||++++.... ...|...++.+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeeccc
Confidence 4789999999999999999999987 5778666665543
No 439
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.21 E-value=0.048 Score=51.31 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=23.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 46799999999999999999998887
No 440
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.20 E-value=0.12 Score=52.91 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=41.3
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
..-+++.|.|.+|+|||++|.++.... ......++||+..+. ..++.....+ ++.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~-~g~ 75 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS-FGW 75 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH-cCC
Confidence 345899999999999999999998877 345888999987765 4445444433 543
No 441
>PRK08149 ATP synthase SpaL; Validated
Probab=94.16 E-value=0.13 Score=55.66 Aligned_cols=94 Identities=12% Similarity=0.168 Sum_probs=53.9
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc-cCHHHHHHHHHHHcCCCCCCCc--cccCC-----
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE-LNIEKIQDVIRSRLGIDPDGDK--WKNRD----- 220 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~--~~~~~----- 220 (798)
..-..++|+|..|+|||||++.+++.. ..+.++...+... .++.++..+...........-- ..+..
T Consensus 149 ~~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~ 223 (428)
T PRK08149 149 GVGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRC 223 (428)
T ss_pred ecCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHH
Confidence 344689999999999999999887754 2234444444433 3566666666654321110000 01111
Q ss_pred -HHHHHHHHHHHh--cCCcEEEEEecccCc
Q 003753 221 -DQGRAAEIFRRL--SNKKFALLLDDLRER 247 (798)
Q Consensus 221 -~~~~~~~l~~~l--~~~r~LlVlDdv~~~ 247 (798)
....+..+.+++ +++.+||++||+-..
T Consensus 224 ~a~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 224 NAALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 112233344444 579999999998554
No 442
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.15 E-value=0.084 Score=55.06 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=35.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDV 202 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 202 (798)
.+++.+.|.||+||||+|.+.+-... .....+.-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA---~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA---ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH---HcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999998666553 22244777776666666665544
No 443
>PRK05439 pantothenate kinase; Provisional
Probab=94.12 E-value=0.44 Score=49.53 Aligned_cols=83 Identities=22% Similarity=0.117 Sum_probs=44.7
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 228 (798)
+..-+|+|.|.+|+||||+|+.+...... ...-..+.-++...-....+.+. +-+..........-|.+.+...|
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~-~~~~~~v~vi~~DdFy~~~~~l~----~~~l~~~kg~Pes~D~~~l~~~L 158 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR-WPEHPKVELVTTDGFLYPNAVLE----ERGLMKRKGFPESYDMRALLRFL 158 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh-hCCCCceEEEeccccccCHHHHh----hhhccccCCCcccccHHHHHHHH
Confidence 45679999999999999999998776521 11112334444433322222221 11111100011345666777767
Q ss_pred HHHhcCCc
Q 003753 229 FRRLSNKK 236 (798)
Q Consensus 229 ~~~l~~~r 236 (798)
.....++.
T Consensus 159 ~~Lk~G~~ 166 (311)
T PRK05439 159 SDVKSGKP 166 (311)
T ss_pred HHHHcCCC
Confidence 66666655
No 444
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.12 E-value=0.073 Score=52.77 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.7
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.|.|+|++|+||||+|+.++..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998776
No 445
>PRK05922 type III secretion system ATPase; Validated
Probab=94.10 E-value=0.19 Score=54.61 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=51.2
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCC-ccCHHHHHHHHHHHcCCCCCCCc--cccCCH----
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAST-ELNIEKIQDVIRSRLGIDPDGDK--WKNRDD---- 221 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~---- 221 (798)
..-..++|+|..|+|||||++.+.+.. . .+....+.+++ ...+.+.+.+..........--- ..+...
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~----~-~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGS----K-STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC----C-CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 344679999999999999999988754 1 23333333333 33344555444433222110000 001111
Q ss_pred --HHHHHHHHHHh--cCCcEEEEEecccCc
Q 003753 222 --QGRAAEIFRRL--SNKKFALLLDDLRER 247 (798)
Q Consensus 222 --~~~~~~l~~~l--~~~r~LlVlDdv~~~ 247 (798)
...+..+.+++ +++++|+++||+-..
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 11223344555 579999999998654
No 446
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.10 E-value=0.38 Score=49.66 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=37.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSR 206 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 206 (798)
-.++.|.|.+|+||||++.+++.... ..+-..++|++... +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 35888999999999999999877762 23235688887655 345566555444
No 447
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.09 E-value=0.17 Score=54.92 Aligned_cols=99 Identities=11% Similarity=0.119 Sum_probs=58.3
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhc-CCCC---------eEEEEEcCCccCHHHHHHHHHHHcC-CCCCCC--c
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMS-HKFG---------AVIMVKASTELNIEKIQDVIRSRLG-IDPDGD--K 215 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~---------~~~wv~vs~~~~~~~~~~~i~~~l~-~~~~~~--~ 215 (798)
..-.-++|.|-.|+|||||+.++.+.....+ .-.| .+++.-+++.....+.+.+.+..-+ ....-- .
T Consensus 139 g~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 139 ARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred ccCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 3446899999999999999999887762000 0022 5677778877666665555555544 111000 0
Q ss_pred cccCCH------HHHHHHHHHHhc---CCcEEEEEecccCc
Q 003753 216 WKNRDD------QGRAAEIFRRLS---NKKFALLLDDLRER 247 (798)
Q Consensus 216 ~~~~~~------~~~~~~l~~~l~---~~r~LlVlDdv~~~ 247 (798)
..+... ...+..+.++++ ++.+|+++||+-..
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 001111 112233556655 59999999998543
No 448
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=94.09 E-value=0.19 Score=50.89 Aligned_cols=59 Identities=34% Similarity=0.501 Sum_probs=39.3
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhhhcCCC-------CeEEEEEcCCcc-CHHHHHHHHHHHcCCCC
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTFSDMSHKF-------GAVIMVKASTEL-NIEKIQDVIRSRLGIDP 211 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-------~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~ 211 (798)
++.|+|.||+|||||+...+-.....++-| ..+++|++.... ++-.=++.+..++++++
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 455679999999999976654432223333 467777765543 45566677788888765
No 449
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.07 E-value=0.038 Score=50.96 Aligned_cols=23 Identities=43% Similarity=0.599 Sum_probs=21.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+|.|.|..|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 450
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.06 E-value=0.042 Score=52.49 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=22.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998775
No 451
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.04 E-value=0.24 Score=54.85 Aligned_cols=99 Identities=22% Similarity=0.242 Sum_probs=53.9
Q ss_pred HHHHHHHhhc--CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCc-
Q 003753 139 LSEVWRYIED--DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDK- 215 (798)
Q Consensus 139 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~- 215 (798)
+.++-+.|.. ..-.++.|.|.+|+|||||+.++..... ..-..++|++..+. ..++.. -++.++...+...
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a---~~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~ 153 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA---KNQMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYV 153 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEE
Confidence 3445555533 2347999999999999999999977762 22235778875543 333322 2334544321100
Q ss_pred cccCCHHHHHHHHHHHhcCCcEEEEEecccC
Q 003753 216 WKNRDDQGRAAEIFRRLSNKKFALLLDDLRE 246 (798)
Q Consensus 216 ~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~ 246 (798)
....+.+.+...+.+ .+.-++|+|.+..
T Consensus 154 ~~e~~~~~I~~~i~~---~~~~~vVIDSIq~ 181 (454)
T TIGR00416 154 LSETNWEQICANIEE---ENPQACVIDSIQT 181 (454)
T ss_pred cCCCCHHHHHHHHHh---cCCcEEEEecchh
Confidence 012233333332221 2455788887654
No 452
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.03 E-value=0.078 Score=55.96 Aligned_cols=45 Identities=27% Similarity=0.335 Sum_probs=38.8
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.+||.+..+..++-.+.++...-+.|.|..|+|||||++.+..-.
T Consensus 5 ~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 689999999998777777666678899999999999999997665
No 453
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.01 E-value=0.11 Score=55.59 Aligned_cols=91 Identities=18% Similarity=0.187 Sum_probs=52.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF 229 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 229 (798)
....+.|.|+.|+||||+++.+.+.. .......++. +.++.. -..... ..+-...+ ...+.......++
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E--~~~~~~-~~~i~q~e----vg~~~~~~~~~l~ 189 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIE--YVHRNK-RSLINQRE----VGLDTLSFANALR 189 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChh--hhccCc-cceEEccc----cCCCCcCHHHHHH
Confidence 34789999999999999999988765 2334444443 222211 110000 00000000 0112233556677
Q ss_pred HHhcCCcEEEEEecccCccccc
Q 003753 230 RRLSNKKFALLLDDLRERIELS 251 (798)
Q Consensus 230 ~~l~~~r~LlVlDdv~~~~~~~ 251 (798)
..|+..+=.|++|.+.+.+.+.
T Consensus 190 ~~lr~~pd~i~vgEird~~~~~ 211 (343)
T TIGR01420 190 AALREDPDVILIGEMRDLETVE 211 (343)
T ss_pred HhhccCCCEEEEeCCCCHHHHH
Confidence 8888999999999998765443
No 454
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.99 E-value=0.038 Score=51.24 Aligned_cols=23 Identities=48% Similarity=0.650 Sum_probs=20.2
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999997764
No 455
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.99 E-value=0.058 Score=56.92 Aligned_cols=46 Identities=30% Similarity=0.365 Sum_probs=40.7
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhh
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFS 176 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (798)
.+||-++.+..|...+.+....-|.|.|..|+||||+|+.+++-..
T Consensus 18 ~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 18 AIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred HHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 6899999999998888887777788999999999999999977663
No 456
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.99 E-value=0.04 Score=52.00 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=21.6
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+.|-+.|.+|+||||+|++++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 467889999999999999998877
No 457
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.99 E-value=0.077 Score=52.39 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDT 174 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (798)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 489999999999999999998743
No 458
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.37 Score=56.56 Aligned_cols=103 Identities=16% Similarity=0.313 Sum_probs=68.1
Q ss_pred CcccchhHHHHHHHHHhhc------C--CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIED------D--GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQD 201 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 201 (798)
..++|.++.+..|-+.+.. . ......+.|+.|+|||-||+.++... -+..+..+-++.|.-. .
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~~------e 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEFQ------E 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhhh------h
Confidence 3678888888888888843 1 35678899999999999999998876 4556666766655422 1
Q ss_pred HHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcE-EEEEecccCcc
Q 003753 202 VIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKF-ALLLDDLRERI 248 (798)
Q Consensus 202 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~-LlVlDdv~~~~ 248 (798)
+.+-.+.++. +...+ ....|-+.++.++| +|+||||+..+
T Consensus 633 -vskligsp~g---yvG~e---~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 633 -VSKLIGSPPG---YVGKE---EGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred -hhhccCCCcc---cccch---hHHHHHHHHhcCCceEEEEechhhcC
Confidence 3333343331 12222 23367777888777 66679998653
No 459
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=93.98 E-value=0.26 Score=56.35 Aligned_cols=26 Identities=42% Similarity=0.662 Sum_probs=22.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.-.+++|+|..|+|||||++.++...
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998764
No 460
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=93.96 E-value=0.3 Score=57.14 Aligned_cols=26 Identities=42% Similarity=0.549 Sum_probs=22.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.-.+++|+|..|+|||||.+.++...
T Consensus 28 ~Ge~v~LvG~NGsGKSTLLriiaG~~ 53 (635)
T PRK11147 28 DNERVCLVGRNGAGKSTLMKILNGEV 53 (635)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34689999999999999999998764
No 461
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.94 E-value=0.19 Score=56.46 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCcEEEEEecccCccccccc-----CCCCCCCcEEEEeCCchHHhhhc
Q 003753 225 AAEIFRRLSNKKFALLLDDLRERIELSEA-----GVPVQNASKIVFTTIFEEVCSSM 276 (798)
Q Consensus 225 ~~~l~~~l~~~r~LlVlDdv~~~~~~~~~-----~~p~~~gs~iivTTR~~~v~~~~ 276 (798)
.-.|.+.|-.++=+|+||.--+.-|...+ .+-.-+| .+||.|-++.....+
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V 216 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNV 216 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Confidence 34566777788889999987766443332 1223455 888999998876654
No 462
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=0.36 Score=47.36 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=35.8
Q ss_pred cccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
++=|=.+.++++.+..+- +.++-|.++|++|.|||-+|++|+|+-
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 344778888888776532 446778899999999999999999976
No 463
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.92 E-value=0.035 Score=29.98 Aligned_cols=14 Identities=43% Similarity=0.646 Sum_probs=4.8
Q ss_pred CCEEEcCCCCCccc
Q 003753 566 LQYLNLSNTNICEL 579 (798)
Q Consensus 566 L~~L~Ls~~~i~~l 579 (798)
|+.|++++|+++.+
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444433
No 464
>PRK13949 shikimate kinase; Provisional
Probab=93.90 E-value=0.046 Score=51.77 Aligned_cols=23 Identities=43% Similarity=0.457 Sum_probs=21.4
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
-|.|+|+.|+||||+++.++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998876
No 465
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.87 E-value=0.19 Score=52.55 Aligned_cols=93 Identities=18% Similarity=0.203 Sum_probs=52.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcC-CccCHHHHHHHHHHHcCCCCCC--CccccCCH-----
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAS-TELNIEKIQDVIRSRLGIDPDG--DKWKNRDD----- 221 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~----- 221 (798)
.-..++|+|..|+|||||++.+.+... .+..+..-+. +..++.+........-+....- ....+...
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT-----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 346899999999999999998877641 2333334444 3345666666655543221100 00011111
Q ss_pred -HHHHHHHHHHh--cCCcEEEEEecccCc
Q 003753 222 -QGRAAEIFRRL--SNKKFALLLDDLRER 247 (798)
Q Consensus 222 -~~~~~~l~~~l--~~~r~LlVlDdv~~~ 247 (798)
...+..+.+++ +++.+|+++||+-..
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 11222333444 579999999997554
No 466
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.82 E-value=0.08 Score=49.20 Aligned_cols=34 Identities=18% Similarity=0.461 Sum_probs=26.0
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEE
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMV 188 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 188 (798)
|++|+|+.|+|||||+.++..... ...+...+.-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~--~~G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK--ARGYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEe
Confidence 589999999999999999999873 2345444443
No 467
>PRK13947 shikimate kinase; Provisional
Probab=93.82 E-value=0.048 Score=51.84 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=21.2
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
-|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998876
No 468
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.35 Score=45.36 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=21.5
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+.|.|..|+|||||.+.++.-.
T Consensus 29 e~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHccc
Confidence 578899999999999999997765
No 469
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.80 E-value=0.046 Score=49.75 Aligned_cols=23 Identities=61% Similarity=0.840 Sum_probs=20.6
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998775
No 470
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.80 E-value=0.12 Score=52.83 Aligned_cols=103 Identities=18% Similarity=0.254 Sum_probs=58.2
Q ss_pred chhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCC
Q 003753 134 GIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDG 213 (798)
Q Consensus 134 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 213 (798)
|...+..+.+..+......++.|.|..|+||||+++.+..... ..-..++.+.-..++....+ .++....
T Consensus 63 g~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~---~~~~~iitiEdp~E~~~~~~-----~q~~v~~-- 132 (264)
T cd01129 63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN---TPEKNIITVEDPVEYQIPGI-----NQVQVNE-- 132 (264)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC---CCCCeEEEECCCceecCCCc-----eEEEeCC--
Confidence 5444444444434334456899999999999999998876652 21123333322222211110 1111111
Q ss_pred CccccCCHHHHHHHHHHHhcCCcEEEEEecccCccccc
Q 003753 214 DKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIELS 251 (798)
Q Consensus 214 ~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~ 251 (798)
.........++..|+...=.++++++.+.+...
T Consensus 133 -----~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 133 -----KAGLTFARGLRAILRQDPDIIMVGEIRDAETAE 165 (264)
T ss_pred -----cCCcCHHHHHHHHhccCCCEEEeccCCCHHHHH
Confidence 111234566777888889999999999876433
No 471
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.79 E-value=0.21 Score=54.11 Aligned_cols=46 Identities=22% Similarity=0.209 Sum_probs=36.0
Q ss_pred CcccchhHHHHHHHHHhh-------c----C-------CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 130 NNIVGIESRLSEVWRYIE-------D----D-------GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~-------~----~-------~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..++|.++.++.+...+. . . ....+.++|++|+|||++|+.++...
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 368999999998876551 1 1 12579999999999999999998765
No 472
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.79 E-value=0.054 Score=53.12 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.6
Q ss_pred eEEEEEecCCchHHHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLND 173 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (798)
.+++|+|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7999999999999999999974
No 473
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=93.78 E-value=0.51 Score=49.12 Aligned_cols=25 Identities=48% Similarity=0.705 Sum_probs=22.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
-.++++.|+.|+|||||.+.+....
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCc
Confidence 4699999999999999999998765
No 474
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.76 E-value=0.044 Score=52.60 Aligned_cols=24 Identities=46% Similarity=0.546 Sum_probs=21.7
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
++|+|+|+.|+||||||+.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 589999999999999999998754
No 475
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.73 E-value=0.085 Score=55.14 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=30.4
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQ 200 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 200 (798)
+++.+.|.||+||||+|...+-...+ ++ ..+.-++.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~-~G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR-RG--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH-TT--S-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh-CC--CCeeEeecCCCccHHHHh
Confidence 68999999999999999887776632 21 335555555444444433
No 476
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.72 E-value=0.13 Score=55.94 Aligned_cols=95 Identities=19% Similarity=0.210 Sum_probs=54.0
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCC--ccccCCH-----
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGD--KWKNRDD----- 221 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~----- 221 (798)
..-..++|.|..|+|||||++.++.... .-..+++..-.+...+.++.+.+...-+....-- ...+...
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~~----~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGTQ----CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 3456899999999999999999976541 1124444444444556666666654322111000 0011111
Q ss_pred -HHHHHHHHHHh--cCCcEEEEEecccCc
Q 003753 222 -QGRAAEIFRRL--SNKKFALLLDDLRER 247 (798)
Q Consensus 222 -~~~~~~l~~~l--~~~r~LlVlDdv~~~ 247 (798)
...+..+.+++ +++.+|+++||+-..
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 11222344554 478999999998654
No 477
>PRK14530 adenylate kinase; Provisional
Probab=93.71 E-value=0.053 Score=53.79 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=21.6
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998776
No 478
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.70 E-value=0.12 Score=50.17 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=35.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEc-CCccCHHHHHHHHHHHcCCCC
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKA-STELNIEKIQDVIRSRLGIDP 211 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v-s~~~~~~~~~~~i~~~l~~~~ 211 (798)
-..|+|+|..|+|||||.+.+..-.. .=...+.+.- .-..-..+-++++..+.|.-.
T Consensus 30 GE~VaiIG~SGaGKSTLLR~lngl~d----~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIf 87 (258)
T COG3638 30 GEMVAIIGPSGAGKSTLLRSLNGLVD----PTSGEILFNGVQITKLKGKELRKLRRDIGMIF 87 (258)
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccC----CCcceEEecccchhccchHHHHHHHHhceeEe
Confidence 46899999999999999999977441 1122333332 222224445556666665544
No 479
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.67 E-value=0.0034 Score=60.01 Aligned_cols=82 Identities=16% Similarity=0.061 Sum_probs=44.8
Q ss_pred hhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEE
Q 003753 491 WKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLN 570 (798)
Q Consensus 491 ~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~ 570 (798)
++.++.|+++.+ ..-.+...++.++.|..|+++.|.+..+|.+ ++.+..++.+++..| +.+.+|.+.+.++++++++
T Consensus 41 ~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhcc-chhhCCccccccCCcchhh
Confidence 344555555555 4444443444455555555555555555555 555555555555555 5555565566666666665
Q ss_pred cCCCC
Q 003753 571 LSNTN 575 (798)
Q Consensus 571 Ls~~~ 575 (798)
+.+|.
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 55554
No 480
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.66 E-value=0.087 Score=48.79 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 137 SRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 137 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+.+++|.++|.+ +++.++|..|+|||||+..+....
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 345666666654 799999999999999999987754
No 481
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.64 E-value=0.06 Score=63.69 Aligned_cols=179 Identities=20% Similarity=0.221 Sum_probs=89.5
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhh-hhcC------------CCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCc
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFS-DMSH------------KFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDK 215 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~------------~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 215 (798)
++.+++.|.|+.+.||||+.+.+.-..- ...+ .|+.+ +..++...++..-.
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i-~~~ig~~~si~~~l--------------- 388 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEI-FADIGDEQSIEQSL--------------- 388 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceE-EEecCCccchhhch---------------
Confidence 3457899999999999999998754310 0011 12221 22222222221111
Q ss_pred cccCCHHHHHHHHHHHhc--CCcEEEEEecccCccccc---ccC---CC--CCCCcEEEEeCCchHHhhhcCCCcceecc
Q 003753 216 WKNRDDQGRAAEIFRRLS--NKKFALLLDDLRERIELS---EAG---VP--VQNASKIVFTTIFEEVCSSMSVDWRFKVD 285 (798)
Q Consensus 216 ~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~~~~---~~~---~p--~~~gs~iivTTR~~~v~~~~~~~~~~~l~ 285 (798)
.+...-...+...+. +.+-|+++|..-...+.. .+. +- ...|+.+|+||-..+++........+.-.
T Consensus 389 ---StfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~ 465 (782)
T PRK00409 389 ---STFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENA 465 (782)
T ss_pred ---hHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEE
Confidence 111112222222222 477899999986543211 110 11 34578999999998876543222111110
Q ss_pred CCC-hHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHHHhcCCCChhHHHHHHHHHhc
Q 003753 286 YLP-QEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQR 354 (798)
Q Consensus 286 ~L~-~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~ 354 (798)
.+. +++... +.-.+.... .. ...|-.|++++ |+|-.+..-|..+.. .....++.+++.+..
T Consensus 466 ~~~~d~~~l~-~~Ykl~~G~-~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~l~~ 527 (782)
T PRK00409 466 SVEFDEETLR-PTYRLLIGI-PG----KSNAFEIAKRL-GLPENIIEEAKKLIG-EDKEKLNELIASLEE 527 (782)
T ss_pred EEEEecCcCc-EEEEEeeCC-CC----CcHHHHHHHHh-CcCHHHHHHHHHHHh-hhhhHHHHHHHHHHH
Confidence 110 111100 000110111 11 33578888887 788888888877765 344566666665554
No 482
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.61 E-value=0.096 Score=49.38 Aligned_cols=22 Identities=45% Similarity=0.662 Sum_probs=19.6
Q ss_pred EEEEecCCchHHHHHHHHHHHh
Q 003753 154 IGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~ 175 (798)
|.|.|..|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999999887
No 483
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.60 E-value=0.22 Score=50.46 Aligned_cols=93 Identities=11% Similarity=0.099 Sum_probs=51.9
Q ss_pred CceEEEEEecCCchHHHHH-HHHHHHhhhhcCCCCeE-EEEEcCCcc-CHHHHHHHHHHHcCCCCCC--CccccCCHHH-
Q 003753 150 GVKIIGLYGVRGVGKSTLL-KQLNDTFSDMSHKFGAV-IMVKASTEL-NIEKIQDVIRSRLGIDPDG--DKWKNRDDQG- 223 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~- 223 (798)
.-..++|.|..|+|||+|| ..+.+.. .-+.+ +++-+.+.. .+.++..++.+.-.....- ....+.....
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 3467999999999999996 5555432 23444 666666654 4677777766432111000 0001111111
Q ss_pred -----HHHHHHHHh--cCCcEEEEEecccCc
Q 003753 224 -----RAAEIFRRL--SNKKFALLLDDLRER 247 (798)
Q Consensus 224 -----~~~~l~~~l--~~~r~LlVlDdv~~~ 247 (798)
.+-.+.+++ +++.+|+++||+-..
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 122233333 479999999998654
No 484
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.60 E-value=0.049 Score=50.16 Aligned_cols=20 Identities=45% Similarity=0.732 Sum_probs=18.7
Q ss_pred EEEEEecCCchHHHHHHHHH
Q 003753 153 IIGLYGVRGVGKSTLLKQLN 172 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~ 172 (798)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999886
No 485
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.59 E-value=0.084 Score=52.12 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.9
Q ss_pred EEEEecCCchHHHHHHHHHHHh
Q 003753 154 IGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~ 175 (798)
|.|.|++|+||||+|+.+...+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999997765
No 486
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.56 E-value=0.02 Score=53.92 Aligned_cols=34 Identities=41% Similarity=0.742 Sum_probs=23.2
Q ss_pred ccCceEEeecc-CCCC--CCcccCCCCccEEEeecCC
Q 003753 690 QDLQDLSIINC-SIKD--LTCIVYIPRLRFLFAKDCP 723 (798)
Q Consensus 690 ~~L~~L~L~~~-~l~~--l~~l~~l~~L~~L~L~~~~ 723 (798)
++|+.|+|++| .+++ +.++..+++|+.|.|.+.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 67777777777 6665 4466677777777776643
No 487
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.53 E-value=0.24 Score=50.74 Aligned_cols=56 Identities=23% Similarity=0.380 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHH
Q 003753 137 SRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQ 200 (798)
Q Consensus 137 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 200 (798)
.-++++..++..+ .-+.+.|.+|+|||++|+.++... . ...+.+++....+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g---~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---D---RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---C---CCEEEEeCCccCCHHHHh
Confidence 3445555555433 356689999999999999998744 2 234556666655555443
No 488
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.51 E-value=0.16 Score=49.52 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=21.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999887
No 489
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.50 E-value=0.21 Score=54.28 Aligned_cols=123 Identities=14% Similarity=0.140 Sum_probs=65.3
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCC--ccccCC------
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGD--KWKNRD------ 220 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~------ 220 (798)
..-..++|+|..|+|||||++.++.... ....++...-.+...+.+.....+..-+....-- ...+..
T Consensus 154 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~r 229 (432)
T PRK06793 154 GIGQKIGIFAGSGVGKSTLLGMIAKNAK----ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLR 229 (432)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccCC----CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHH
Confidence 3446889999999999999999887651 1223343322334567677666655433221000 000111
Q ss_pred HHHHHHHHHHHh--cCCcEEEEEecccCcccc-ccc----CCCCCCCcEEEEeCCchHHhhh
Q 003753 221 DQGRAAEIFRRL--SNKKFALLLDDLRERIEL-SEA----GVPVQNASKIVFTTIFEEVCSS 275 (798)
Q Consensus 221 ~~~~~~~l~~~l--~~~r~LlVlDdv~~~~~~-~~~----~~p~~~gs~iivTTR~~~v~~~ 275 (798)
....+..+.+++ +++..|+++||+-...+- .++ +-|...|--..+.|....++..
T Consensus 230 a~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~G~~~~~~s~l~~L~ER 291 (432)
T PRK06793 230 AAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIGGKTLLMESYMKKLLER 291 (432)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCCCeeeeeeccchhHHHH
Confidence 112223344444 469999999998654321 111 2222235555565555555443
No 490
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=93.50 E-value=0.23 Score=53.99 Aligned_cols=94 Identities=18% Similarity=0.206 Sum_probs=50.1
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCC-ccCHHHHHHHHHHHcCCC-------CCC-CccccC
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAST-ELNIEKIQDVIRSRLGID-------PDG-DKWKNR 219 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~-~~~~~~ 219 (798)
..-..++|+|..|+|||||++.+.... ..+..+...+.. ..++.+.....+.+-+.. ..+ ......
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~-----~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl 227 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRYT-----QADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRI 227 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhccc-----CCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhH
Confidence 445789999999999999999887754 123332232322 223444443333332211 100 000111
Q ss_pred CHHHHHHHHHHHh--cCCcEEEEEecccCc
Q 003753 220 DDQGRAAEIFRRL--SNKKFALLLDDLRER 247 (798)
Q Consensus 220 ~~~~~~~~l~~~l--~~~r~LlVlDdv~~~ 247 (798)
...+.+..+.+++ +++.+|+++||+-..
T Consensus 228 ~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~ 257 (434)
T PRK07196 228 KATELCHAIATYYRDKGHDVLLLVDSLTRY 257 (434)
T ss_pred HHHHHHHHHHHHhhhccCCEEEeecchhHH
Confidence 1222333344443 579999999998654
No 491
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.49 E-value=0.12 Score=54.21 Aligned_cols=149 Identities=19% Similarity=0.294 Sum_probs=79.0
Q ss_pred ccchhHHHHHHHHHhhc-----------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcC-CC--C-eEEEEE-
Q 003753 132 IVGIESRLSEVWRYIED-----------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSH-KF--G-AVIMVK- 189 (798)
Q Consensus 132 ~vGr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f--~-~~~wv~- 189 (798)
..|-..+...|.+.... ..-.+++|+|.+|.||||+.+++......... .| + +.+-+.
T Consensus 373 ~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~ 452 (593)
T COG2401 373 IKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPK 452 (593)
T ss_pred cccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccc
Confidence 44666777777776622 22358999999999999999998776521100 11 0 111111
Q ss_pred ----c------CCccCHHHHHH-------------HHHHHcCCCCCC---Cccc-cCCHHHHHHHHHHHhcCCcEEEEEe
Q 003753 190 ----A------STELNIEKIQD-------------VIRSRLGIDPDG---DKWK-NRDDQGRAAEIFRRLSNKKFALLLD 242 (798)
Q Consensus 190 ----v------s~~~~~~~~~~-------------~i~~~l~~~~~~---~~~~-~~~~~~~~~~l~~~l~~~r~LlVlD 242 (798)
+ ...++-..++. +|++..|+.+.- ..+. -.+-+.-..+|.+.+.++.-+++.|
T Consensus 453 nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 453 NTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 0 11122223333 333333333210 0011 1122333456778888888899999
Q ss_pred cccCcccccc---cC--CC---CCCCcEEEEeCCchHHhhhcCCCc
Q 003753 243 DLRERIELSE---AG--VP---VQNASKIVFTTIFEEVCSSMSVDW 280 (798)
Q Consensus 243 dv~~~~~~~~---~~--~p---~~~gs~iivTTR~~~v~~~~~~~~ 280 (798)
......|-.. ++ +. ...|+.+++.|+.+++...+..+.
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~ 578 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDT 578 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCce
Confidence 8765432111 10 00 235777777777788877664443
No 492
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.48 E-value=0.089 Score=55.40 Aligned_cols=45 Identities=31% Similarity=0.400 Sum_probs=37.2
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++|.+..++.+.-.+.+.+..-+.+.|..|+||||+|+.+..-.
T Consensus 9 ~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 9 AIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 689999999988765554455569999999999999999987765
No 493
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.47 E-value=0.12 Score=47.78 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=25.5
Q ss_pred hcCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 147 EDDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 147 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
......||.+.|.+|+||||+|..++...
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 33566899999999999999999998887
No 494
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.46 E-value=3.7 Score=42.71 Aligned_cols=163 Identities=11% Similarity=0.075 Sum_probs=87.2
Q ss_pred HHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhh-------hcCCCCeEEEEEc-CCccCHHHHHHHHHHHcCC
Q 003753 139 LSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSD-------MSHKFGAVIMVKA-STELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 139 ~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~-------~~~~f~~~~wv~v-s~~~~~~~~~~~i~~~l~~ 209 (798)
++.+.+.+..+.. ++..++|..|.||+++|..+.+..-- ...+-+-+.++.. +....++++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 4445555555554 56669999999999999998776510 0112222333321 1222333332 33333322
Q ss_pred CCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc-----cccc-CCCCCCCcEEEE-eCCchHHhhh-cCCCcc
Q 003753 210 DPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE-----LSEA-GVPVQNASKIVF-TTIFEEVCSS-MSVDWR 281 (798)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-----~~~~-~~p~~~gs~iiv-TTR~~~v~~~-~~~~~~ 281 (798)
.+ .-.+++=++|+|++....+ +.+. .- ...++.+|+ |+....+... ......
T Consensus 84 ~~-------------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE-Pp~~t~~il~~~~~~kll~TI~SRc~~ 143 (299)
T PRK07132 84 SS-------------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEE-PPKDTYFLLTTKNINKVLPTIVSRCQV 143 (299)
T ss_pred CC-------------------cccCCceEEEEecccccCHHHHHHHHHHhhC-CCCCeEEEEEeCChHhChHHHHhCeEE
Confidence 21 0014677888888865432 2222 22 234555555 5444444432 234568
Q ss_pred eeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHH
Q 003753 282 FKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVT 331 (798)
Q Consensus 282 ~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 331 (798)
+++.++++++..+.+... + .+ .+.+..++...+|.=-|+..
T Consensus 144 ~~f~~l~~~~l~~~l~~~-~-----~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 144 FNVKEPDQQKILAKLLSK-N-----KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred EECCCCCHHHHHHHHHHc-C-----CC---hhHHHHHHHHcCCHHHHHHH
Confidence 899999999988777654 1 11 12355666666663344444
No 495
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.45 E-value=0.063 Score=49.95 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEecCCchHHHHHHHHHHHh
Q 003753 154 IGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~ 175 (798)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998775
No 496
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.45 E-value=0.071 Score=51.70 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+|.|.|.+|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998875
No 497
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.42 E-value=0.059 Score=52.99 Aligned_cols=26 Identities=42% Similarity=0.422 Sum_probs=23.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+|+|+|+.|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998875
No 498
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.40 E-value=0.13 Score=58.28 Aligned_cols=45 Identities=20% Similarity=0.326 Sum_probs=38.3
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+++|.+..++.+...+......-+.|+|..|+|||++|+.+++..
T Consensus 66 ~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999888765555667899999999999999998754
No 499
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.35 E-value=0.07 Score=45.61 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.9
Q ss_pred ceEEEEEecCCchHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLN 172 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~ 172 (798)
-..++|+|+.|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999875
No 500
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.35 E-value=0.059 Score=52.04 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=21.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++.|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999996654
Done!