Query 003753
Match_columns 798
No_of_seqs 705 out of 4130
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 02:58:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003753.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003753hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 8.8E-50 3E-54 453.8 19.7 318 131-468 129-471 (549)
2 1vt4_I APAF-1 related killer D 100.0 3.3E-40 1.1E-44 377.1 17.9 288 131-461 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 3.5E-38 1.2E-42 397.4 27.8 315 130-468 124-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.9E-35 6.6E-40 341.4 25.2 310 130-465 124-449 (591)
5 3o6n_A APL1; leucine-rich repe 99.9 3.5E-23 1.2E-27 226.0 15.0 269 490-787 43-334 (390)
6 4fmz_A Internalin; leucine ric 99.9 4.4E-22 1.5E-26 213.7 20.7 259 487-786 61-326 (347)
7 2id5_A Lingo-1, leucine rich r 99.9 6.1E-22 2.1E-26 222.4 21.1 282 476-787 17-312 (477)
8 4fcg_A Uncharacterized protein 99.9 1.2E-22 4.2E-27 215.4 13.7 218 517-779 82-310 (328)
9 3oja_B Anopheles plasmodium-re 99.9 1.7E-22 5.8E-27 233.0 15.5 269 490-787 49-340 (597)
10 4fmz_A Internalin; leucine ric 99.9 1.6E-21 5.6E-26 209.2 20.6 262 480-781 76-344 (347)
11 1ogq_A PGIP-2, polygalacturona 99.9 1.7E-22 5.6E-27 213.2 11.5 251 492-789 50-310 (313)
12 4fcg_A Uncharacterized protein 99.9 5.6E-22 1.9E-26 210.4 15.2 223 538-795 79-302 (328)
13 1xku_A Decorin; proteoglycan, 99.9 2E-21 6.9E-26 206.9 18.6 254 493-781 32-304 (330)
14 3vq2_A TLR4, TOLL-like recepto 99.9 3.2E-21 1.1E-25 223.5 19.8 146 476-626 17-167 (606)
15 2id5_A Lingo-1, leucine rich r 99.9 1.9E-21 6.6E-26 218.3 16.8 265 488-781 52-331 (477)
16 2z80_A TOLL-like receptor 2, v 99.9 1.2E-21 4.1E-26 210.7 14.2 264 479-782 40-313 (353)
17 3v47_A TOLL-like receptor 5B a 99.9 2.6E-21 8.9E-26 216.0 17.4 147 475-626 15-168 (455)
18 3bz5_A Internalin-J, INLJ; leu 99.9 3E-21 1E-25 214.1 17.6 267 489-794 39-331 (457)
19 2ft3_A Biglycan; proteoglycan, 99.9 2.2E-21 7.5E-26 206.7 15.0 254 493-782 34-306 (332)
20 3bz5_A Internalin-J, INLJ; leu 99.9 5.9E-21 2E-25 211.8 18.7 273 482-780 54-349 (457)
21 1o6v_A Internalin A; bacterial 99.9 5.7E-21 1.9E-25 213.6 18.1 248 490-780 44-319 (466)
22 3o6n_A APL1; leucine-rich repe 99.9 5.1E-21 1.8E-25 208.8 17.3 275 481-781 56-350 (390)
23 1o6v_A Internalin A; bacterial 99.9 1.1E-20 3.9E-25 211.1 20.1 271 483-781 59-364 (466)
24 3oja_B Anopheles plasmodium-re 99.8 5.7E-21 1.9E-25 220.2 17.0 268 489-781 72-356 (597)
25 2z66_A Variable lymphocyte rec 99.8 2.7E-21 9.2E-26 203.6 12.9 129 492-624 28-162 (306)
26 4eco_A Uncharacterized protein 99.8 6.9E-21 2.3E-25 220.8 17.2 281 490-789 247-584 (636)
27 2z81_A CD282 antigen, TOLL-lik 99.8 6.1E-21 2.1E-25 218.4 16.5 144 479-625 14-161 (549)
28 4ecn_A Leucine-rich repeat pro 99.8 5.9E-21 2E-25 225.2 15.8 281 491-790 490-825 (876)
29 2z7x_B TOLL-like receptor 1, v 99.8 3.7E-20 1.3E-24 210.3 21.6 136 480-624 10-150 (520)
30 3zyj_A Leucine-rich repeat-con 99.8 1.2E-20 4.3E-25 209.1 16.3 131 492-624 64-197 (440)
31 3zyi_A Leucine-rich repeat-con 99.8 1.3E-20 4.4E-25 209.8 16.5 130 493-624 76-208 (452)
32 4ecn_A Leucine-rich repeat pro 99.8 1.5E-20 5.3E-25 221.6 17.4 269 493-787 549-843 (876)
33 3t6q_A CD180 antigen; protein- 99.8 5.6E-20 1.9E-24 213.1 21.6 285 477-780 19-386 (606)
34 4eco_A Uncharacterized protein 99.8 1.3E-20 4.4E-25 218.5 15.5 270 492-787 305-603 (636)
35 2z7x_B TOLL-like receptor 1, v 99.8 3.7E-20 1.3E-24 210.3 17.7 128 645-789 321-462 (520)
36 2z63_A TOLL-like receptor 4, v 99.8 4.5E-20 1.5E-24 212.2 18.5 144 477-625 14-162 (570)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5.7E-20 1.9E-24 210.7 18.9 288 475-789 36-491 (562)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.3E-19 4.6E-24 207.6 20.8 126 493-625 32-159 (562)
39 3t6q_A CD180 antigen; protein- 99.8 7.7E-20 2.6E-24 211.9 17.0 263 490-781 276-558 (606)
40 3v47_A TOLL-like receptor 5B a 99.8 7.3E-20 2.5E-24 204.2 16.2 132 488-622 50-190 (455)
41 2ft3_A Biglycan; proteoglycan, 99.8 2.3E-19 7.8E-24 191.1 19.1 272 481-781 44-331 (332)
42 3j0a_A TOLL-like receptor 5; m 99.8 1.8E-19 6.1E-24 216.2 20.2 148 473-625 7-161 (844)
43 1ziw_A TOLL-like receptor 3; i 99.8 1.4E-19 4.7E-24 212.7 18.4 146 476-625 10-158 (680)
44 3zyj_A Leucine-rich repeat-con 99.8 7.2E-20 2.4E-24 203.0 15.0 241 494-781 45-290 (440)
45 3zyi_A Leucine-rich repeat-con 99.8 7.7E-20 2.6E-24 203.5 15.0 239 495-780 57-300 (452)
46 3rgz_A Protein brassinosteroid 99.8 7.1E-20 2.4E-24 217.3 15.5 272 491-788 393-722 (768)
47 3rgz_A Protein brassinosteroid 99.8 1.3E-19 4.3E-24 215.2 17.4 132 489-625 197-331 (768)
48 2z66_A Variable lymphocyte rec 99.8 8.7E-20 3E-24 192.0 14.2 242 496-781 11-259 (306)
49 1ziw_A TOLL-like receptor 3; i 99.8 1.6E-19 5.5E-24 212.1 17.3 126 495-625 7-134 (680)
50 1ogq_A PGIP-2, polygalacturona 99.8 6.9E-20 2.4E-24 193.1 11.8 228 488-763 72-308 (313)
51 2z80_A TOLL-like receptor 2, v 99.8 1.7E-19 5.8E-24 193.9 14.1 252 497-790 36-296 (353)
52 2z63_A TOLL-like receptor 4, v 99.8 3.7E-19 1.3E-23 204.6 17.8 124 488-614 48-175 (570)
53 1xku_A Decorin; proteoglycan, 99.8 5.6E-19 1.9E-23 187.9 17.7 262 491-780 51-329 (330)
54 2z81_A CD282 antigen, TOLL-lik 99.8 3.5E-19 1.2E-23 203.8 17.2 122 497-624 10-135 (549)
55 3g06_A SSPH2 (leucine-rich rep 99.8 4E-19 1.4E-23 202.8 16.9 229 492-781 61-295 (622)
56 1ozn_A Reticulon 4 receptor; N 99.8 5.5E-19 1.9E-23 183.8 16.0 218 495-757 14-236 (285)
57 1wwl_A Monocyte differentiatio 99.8 2.3E-20 8E-25 196.7 5.2 243 492-781 43-307 (312)
58 3vq2_A TLR4, TOLL-like recepto 99.8 3.2E-19 1.1E-23 206.6 14.9 262 488-783 281-558 (606)
59 3o53_A Protein LRIM1, AGAP0063 99.8 2.2E-19 7.4E-24 189.8 11.5 242 491-786 33-278 (317)
60 1ozn_A Reticulon 4 receptor; N 99.8 3.5E-19 1.2E-23 185.3 12.7 213 478-724 19-237 (285)
61 3oja_A Leucine-rich immune mol 99.8 1.4E-19 4.8E-24 202.5 10.2 233 492-778 34-270 (487)
62 3o53_A Protein LRIM1, AGAP0063 99.8 9.1E-20 3.1E-24 192.7 6.7 244 488-785 54-301 (317)
63 4g8a_A TOLL-like receptor 4; l 99.8 4E-18 1.4E-22 198.6 19.4 145 477-626 38-187 (635)
64 1h6u_A Internalin H; cell adhe 99.8 2.6E-18 8.9E-23 180.5 15.4 192 488-723 37-228 (308)
65 3oja_A Leucine-rich immune mol 99.8 1.6E-19 5.4E-24 202.1 5.5 220 513-783 31-250 (487)
66 1p9a_G Platelet glycoprotein I 99.8 4.5E-18 1.5E-22 176.8 14.9 198 491-724 9-207 (290)
67 3j0a_A TOLL-like receptor 5; m 99.8 1.1E-17 3.8E-22 200.6 19.6 263 496-788 8-355 (844)
68 2o6q_A Variable lymphocyte rec 99.7 8.6E-18 2.9E-22 173.1 14.8 196 493-723 17-216 (270)
69 3rfs_A Internalin B, repeat mo 99.7 9.8E-18 3.4E-22 172.8 14.9 206 489-771 38-247 (272)
70 2z62_A TOLL-like receptor 4, v 99.7 7.6E-18 2.6E-22 174.2 13.7 128 493-624 29-161 (276)
71 1h6u_A Internalin H; cell adhe 99.7 6.9E-18 2.4E-22 177.2 13.1 197 512-763 37-233 (308)
72 2xwt_C Thyrotropin receptor; s 99.7 4.4E-18 1.5E-22 171.9 11.0 207 504-783 22-239 (239)
73 2z62_A TOLL-like receptor 4, v 99.7 1.7E-17 5.7E-22 171.7 15.3 210 504-756 18-234 (276)
74 1jl5_A Outer protein YOPM; leu 99.7 2.3E-17 8E-22 182.6 16.8 120 492-625 131-250 (454)
75 1jl5_A Outer protein YOPM; leu 99.7 6.1E-18 2.1E-22 187.3 11.0 244 491-788 10-274 (454)
76 3rfs_A Internalin B, repeat mo 99.7 3.6E-18 1.2E-22 176.1 8.0 221 493-791 20-243 (272)
77 1p9a_G Platelet glycoprotein I 99.7 2.7E-17 9.1E-22 171.0 13.9 198 512-757 6-206 (290)
78 2o6q_A Variable lymphocyte rec 99.7 3.7E-17 1.3E-21 168.3 14.1 197 516-757 16-216 (270)
79 3g06_A SSPH2 (leucine-rich rep 99.7 7.6E-17 2.6E-21 184.1 17.7 224 478-760 69-298 (622)
80 1wwl_A Monocyte differentiatio 99.7 1.9E-17 6.4E-22 174.4 8.5 203 514-756 93-306 (312)
81 1h6t_A Internalin B; cell adhe 99.7 3E-17 1E-21 170.8 8.0 168 514-723 44-211 (291)
82 4g8a_A TOLL-like receptor 4; l 99.7 3.3E-16 1.1E-20 182.3 17.5 140 504-658 42-183 (635)
83 2ca6_A RAN GTPase-activating p 99.7 6.1E-18 2.1E-22 184.1 1.8 136 512-660 28-199 (386)
84 2xwt_C Thyrotropin receptor; s 99.7 5.4E-17 1.8E-21 163.9 8.4 204 482-758 23-238 (239)
85 2ast_B S-phase kinase-associat 99.7 2.9E-17 9.9E-22 175.2 6.1 202 516-756 70-282 (336)
86 4ay9_X Follicle-stimulating ho 99.7 1.7E-16 5.9E-21 169.9 11.4 120 497-621 14-137 (350)
87 3m19_A Variable lymphocyte rec 99.7 7.6E-16 2.6E-20 156.6 15.1 172 493-723 15-190 (251)
88 2ast_B S-phase kinase-associat 99.7 1.5E-16 5.2E-21 169.6 9.9 220 518-780 49-282 (336)
89 1m9s_A Internalin B; cell inva 99.7 7.7E-17 2.6E-21 183.8 7.9 169 513-723 40-208 (605)
90 4glp_A Monocyte differentiatio 99.6 3E-16 1E-20 165.1 9.7 131 492-625 91-237 (310)
91 2qen_A Walker-type ATPase; unk 99.6 2E-14 6.9E-19 154.0 24.2 288 131-462 13-349 (350)
92 4ay9_X Follicle-stimulating ho 99.6 3.9E-16 1.3E-20 167.2 10.6 225 519-787 12-240 (350)
93 1h6t_A Internalin B; cell adhe 99.6 1.4E-15 4.8E-20 158.1 13.6 175 488-706 42-216 (291)
94 1w5s_A Origin recognition comp 99.6 2.6E-14 8.9E-19 156.9 22.9 304 131-457 23-387 (412)
95 4glp_A Monocyte differentiatio 99.6 6.5E-16 2.2E-20 162.5 9.1 221 516-781 64-305 (310)
96 1m9s_A Internalin B; cell inva 99.6 4.6E-16 1.6E-20 177.4 8.4 189 515-757 20-208 (605)
97 1z7x_W Ribonuclease inhibitor; 99.6 1.3E-16 4.6E-21 178.0 3.9 130 491-624 27-182 (461)
98 2ca6_A RAN GTPase-activating p 99.6 8.4E-16 2.9E-20 167.1 9.2 246 517-781 10-314 (386)
99 2fna_A Conserved hypothetical 99.6 3.5E-14 1.2E-18 152.6 21.8 287 131-461 14-356 (357)
100 1z7x_W Ribonuclease inhibitor; 99.6 2E-16 6.7E-21 176.7 3.7 264 493-780 86-408 (461)
101 3goz_A Leucine-rich repeat-con 99.6 4.2E-16 1.4E-20 167.8 4.3 235 493-757 23-295 (362)
102 3m19_A Variable lymphocyte rec 99.6 6.7E-15 2.3E-19 149.6 12.9 168 478-661 22-192 (251)
103 1xeu_A Internalin C; cellular 99.6 2.1E-15 7.3E-20 154.1 7.8 124 491-625 18-141 (263)
104 4ezg_A Putative uncharacterize 99.6 7.1E-15 2.4E-19 143.4 11.0 151 489-660 41-193 (197)
105 3cvr_A Invasion plasmid antige 99.6 1.5E-14 5E-19 163.1 14.5 186 493-728 60-246 (571)
106 3goz_A Leucine-rich repeat-con 99.6 4.6E-15 1.6E-19 159.6 9.9 238 513-781 19-295 (362)
107 2v9t_B SLIT homolog 2 protein 99.6 1E-14 3.4E-19 144.9 11.3 149 495-660 14-164 (220)
108 3cvr_A Invasion plasmid antige 99.5 1.3E-14 4.5E-19 163.5 12.0 182 516-763 59-247 (571)
109 3ogk_B Coronatine-insensitive 99.5 9.1E-15 3.1E-19 168.7 11.0 105 514-620 218-326 (592)
110 4ezg_A Putative uncharacterize 99.5 1.2E-14 4.2E-19 141.7 10.2 149 513-723 41-192 (197)
111 3e6j_A Variable lymphocyte rec 99.5 2.5E-14 8.7E-19 142.9 12.6 146 496-659 23-170 (229)
112 2o6s_A Variable lymphocyte rec 99.5 1.8E-14 6.1E-19 141.9 9.8 125 496-625 11-137 (208)
113 3e6j_A Variable lymphocyte rec 99.5 3.1E-14 1.1E-18 142.3 11.0 144 478-625 27-172 (229)
114 1xeu_A Internalin C; cellular 99.5 6E-14 2E-18 143.4 13.2 152 486-662 35-186 (263)
115 2v70_A SLIT-2, SLIT homolog 2 99.5 4.1E-14 1.4E-18 140.4 11.4 150 495-661 14-166 (220)
116 2v9t_B SLIT homolog 2 protein 99.5 5.8E-14 2E-18 139.3 11.8 145 477-625 18-165 (220)
117 2xot_A Amphoterin-induced prot 99.5 4E-14 1.4E-18 152.1 11.1 126 495-625 21-149 (361)
118 3ogk_B Coronatine-insensitive 99.5 3.1E-14 1.1E-18 164.2 8.0 267 490-781 162-499 (592)
119 2v70_A SLIT-2, SLIT homolog 2 99.5 1.8E-13 6E-18 135.8 11.0 143 479-625 20-166 (220)
120 2o6s_A Variable lymphocyte rec 99.5 2.7E-13 9.3E-18 133.4 11.8 132 491-625 27-161 (208)
121 2je0_A Acidic leucine-rich nuc 99.4 7.9E-14 2.7E-18 129.2 7.1 124 492-620 17-148 (149)
122 2ell_A Acidic leucine-rich nuc 99.4 7.1E-14 2.4E-18 132.4 6.9 129 492-625 24-160 (168)
123 2xot_A Amphoterin-induced prot 99.4 1.7E-13 5.9E-18 147.1 10.4 168 477-660 25-201 (361)
124 2qby_B CDC6 homolog 3, cell di 99.4 3.1E-11 1E-15 130.9 26.9 297 131-456 21-354 (384)
125 2p1m_B Transport inhibitor res 99.4 1.2E-13 4.1E-18 159.4 7.3 130 490-622 154-324 (594)
126 2wfh_A SLIT homolog 2 protein 99.4 7.9E-13 2.7E-17 128.0 11.7 125 495-625 13-139 (193)
127 1dce_A Protein (RAB geranylger 99.4 2.2E-15 7.5E-20 170.8 -7.9 197 513-753 346-567 (567)
128 1w8a_A SLIT protein; signaling 99.4 6.7E-13 2.3E-17 128.6 10.3 126 495-625 11-139 (192)
129 1a9n_A U2A', U2A'; complex (nu 99.4 2.6E-13 8.8E-18 129.6 6.6 106 514-624 17-125 (176)
130 2ell_A Acidic leucine-rich nuc 99.4 3.6E-13 1.2E-17 127.6 7.5 135 514-661 22-160 (168)
131 2v1u_A Cell division control p 99.4 4.1E-11 1.4E-15 130.0 24.9 300 131-457 20-367 (387)
132 2p1m_B Transport inhibitor res 99.4 9.5E-14 3.2E-18 160.2 3.9 213 492-720 130-405 (594)
133 1fnn_A CDC6P, cell division co 99.4 6.6E-11 2.2E-15 128.5 25.7 287 131-444 18-353 (389)
134 2o6r_A Variable lymphocyte rec 99.4 1.7E-12 6E-17 123.9 11.3 127 494-625 9-137 (177)
135 4b8c_D Glucose-repressible alc 99.4 1.7E-13 5.8E-18 160.3 4.2 88 534-624 218-305 (727)
136 2je0_A Acidic leucine-rich nuc 99.4 3.9E-13 1.3E-17 124.5 5.7 128 514-655 15-147 (149)
137 1a9n_A U2A', U2A'; complex (nu 99.3 1.6E-12 5.4E-17 124.1 8.5 130 490-625 17-153 (176)
138 2qby_A CDC6 homolog 1, cell di 99.3 9E-11 3.1E-15 127.3 23.5 300 131-456 21-363 (386)
139 4b8c_D Glucose-repressible alc 99.3 2.4E-12 8.1E-17 150.7 8.5 111 511-625 219-329 (727)
140 2wfh_A SLIT homolog 2 protein 99.3 3.6E-12 1.2E-16 123.4 8.1 125 519-660 13-138 (193)
141 1w8a_A SLIT protein; signaling 99.3 3.2E-12 1.1E-16 123.7 6.7 126 519-661 11-139 (192)
142 1dce_A Protein (RAB geranylger 99.2 1E-11 3.4E-16 140.8 9.7 101 518-624 443-545 (567)
143 2r9u_A Variable lymphocyte rec 99.2 3.3E-11 1.1E-15 114.3 9.1 105 495-604 15-121 (174)
144 1ds9_A Outer arm dynein; leuci 99.2 2E-13 7E-18 133.1 -7.0 116 505-625 37-153 (198)
145 1ds9_A Outer arm dynein; leuci 99.2 1.3E-12 4.5E-17 127.3 -2.9 127 518-661 25-153 (198)
146 2r9u_A Variable lymphocyte rec 99.1 5.8E-11 2E-15 112.7 8.1 103 518-625 14-118 (174)
147 2o6r_A Variable lymphocyte rec 99.1 7E-11 2.4E-15 112.7 8.7 128 517-661 8-137 (177)
148 3g39_A Variable lymphocyte rec 99.1 6.3E-11 2.2E-15 112.0 8.0 101 519-624 12-114 (170)
149 1njg_A DNA polymerase III subu 99.1 8.7E-10 3E-14 111.0 16.9 195 131-336 24-231 (250)
150 3g39_A Variable lymphocyte rec 99.1 9.7E-11 3.3E-15 110.7 8.7 105 494-603 11-117 (170)
151 2chg_A Replication factor C sm 99.1 1.5E-09 5.1E-14 107.6 16.8 181 131-335 18-206 (226)
152 3sb4_A Hypothetical leucine ri 99.1 5.1E-10 1.8E-14 118.3 12.8 265 490-788 23-314 (329)
153 3sb4_A Hypothetical leucine ri 98.9 8.4E-10 2.9E-14 116.7 7.4 53 690-753 273-328 (329)
154 4fdw_A Leucine rich hypothetic 98.9 1.1E-08 3.7E-13 110.6 15.5 238 493-787 114-361 (401)
155 4fdw_A Leucine rich hypothetic 98.9 2.4E-08 8.3E-13 107.9 18.2 232 492-777 135-377 (401)
156 1sxj_B Activator 1 37 kDa subu 98.9 9.6E-09 3.3E-13 108.2 13.9 180 130-333 21-210 (323)
157 2ifg_A High affinity nerve gro 98.8 4.8E-09 1.6E-13 111.8 8.7 93 504-598 20-114 (347)
158 1hqc_A RUVB; extended AAA-ATPa 98.8 7.9E-08 2.7E-12 101.2 16.0 171 131-336 13-214 (324)
159 2ifg_A High affinity nerve gro 98.8 1.2E-08 3.9E-13 108.8 8.6 102 519-625 11-116 (347)
160 3te6_A Regulatory protein SIR3 98.7 2E-07 6.7E-12 96.0 17.2 201 131-336 21-283 (318)
161 1iqp_A RFCS; clamp loader, ext 98.7 7.2E-08 2.4E-12 101.6 12.2 182 131-336 26-215 (327)
162 3un9_A NLR family member X1; l 98.7 8.7E-09 3E-13 110.3 4.3 15 690-704 239-253 (372)
163 1jbk_A CLPB protein; beta barr 98.6 8.7E-08 3E-12 92.2 8.8 148 131-296 23-194 (195)
164 1jr3_A DNA polymerase III subu 98.5 1.6E-06 5.3E-11 93.2 15.5 187 131-333 17-221 (373)
165 2chq_A Replication factor C sm 98.5 1E-06 3.4E-11 92.4 13.5 176 131-333 18-204 (319)
166 3un9_A NLR family member X1; l 98.4 4.2E-08 1.4E-12 105.0 1.7 59 564-624 155-223 (372)
167 3bos_A Putative DNA replicatio 98.4 4.8E-07 1.7E-11 90.5 8.4 168 131-333 29-217 (242)
168 2z4s_A Chromosomal replication 98.4 2.9E-06 9.8E-11 92.7 15.1 178 131-331 106-304 (440)
169 4fs7_A Uncharacterized protein 98.4 1.5E-06 5.3E-11 94.0 12.1 38 582-621 157-194 (394)
170 1sxj_A Activator 1 95 kDa subu 98.4 2.4E-06 8.3E-11 95.5 13.6 186 130-333 39-253 (516)
171 3h4m_A Proteasome-activating n 98.3 2.7E-06 9.2E-11 87.5 12.2 166 131-325 18-222 (285)
172 2ra8_A Uncharacterized protein 98.2 7.1E-07 2.4E-11 94.5 4.8 81 536-620 135-227 (362)
173 1sxj_D Activator 1 41 kDa subu 98.2 7.3E-06 2.5E-10 87.2 12.4 191 130-333 37-235 (353)
174 2ra8_A Uncharacterized protein 98.2 1.2E-06 4.3E-11 92.7 6.2 78 514-595 137-227 (362)
175 3pvs_A Replication-associated 98.2 5.3E-05 1.8E-09 82.4 18.9 172 130-333 26-215 (447)
176 2p65_A Hypothetical protein PF 98.2 1.8E-06 6.3E-11 82.3 6.2 45 131-175 23-67 (187)
177 1d2n_A N-ethylmaleimide-sensit 98.2 5.2E-05 1.8E-09 77.2 17.2 192 131-355 34-264 (272)
178 3e4g_A ATP synthase subunit S, 98.1 1.3E-06 4.6E-11 81.0 4.4 87 690-785 61-154 (176)
179 3syl_A Protein CBBX; photosynt 98.1 1.2E-05 4.2E-10 83.6 12.4 147 131-302 32-219 (309)
180 1sxj_E Activator 1 40 kDa subu 98.1 1.6E-05 5.6E-10 84.4 13.5 191 131-333 15-237 (354)
181 3qfl_A MLA10; coiled-coil, (CC 98.1 1.5E-06 5E-11 75.0 3.3 65 6-70 1-69 (115)
182 2qz4_A Paraplegin; AAA+, SPG7, 98.1 4.4E-05 1.5E-09 77.2 15.0 175 131-332 7-221 (262)
183 4gt6_A Cell surface protein; l 98.1 4.4E-05 1.5E-09 82.4 15.2 264 494-793 66-390 (394)
184 1l8q_A Chromosomal replication 98.0 2.6E-05 9E-10 81.7 12.7 162 138-327 22-202 (324)
185 3uk6_A RUVB-like 2; hexameric 98.0 3E-05 1E-09 82.9 13.3 45 131-175 45-94 (368)
186 3d8b_A Fidgetin-like protein 1 98.0 0.00014 4.7E-09 77.1 17.8 173 131-334 85-296 (357)
187 3pfi_A Holliday junction ATP-d 98.0 4.3E-05 1.5E-09 80.6 13.8 165 131-333 30-227 (338)
188 3b9p_A CG5977-PA, isoform A; A 98.0 0.00017 5.7E-09 74.4 17.1 172 131-333 22-233 (297)
189 1io0_A Tropomodulin; LRR prote 98.0 3.4E-06 1.2E-10 80.4 3.8 108 513-624 33-163 (185)
190 3cf0_A Transitional endoplasmi 98.0 0.00011 3.8E-09 75.9 15.4 169 131-328 16-223 (301)
191 1sxj_C Activator 1 40 kDa subu 98.0 7.6E-05 2.6E-09 78.7 14.4 175 131-329 26-208 (340)
192 3rw6_A Nuclear RNA export fact 97.9 3.4E-06 1.2E-10 84.6 3.5 105 514-620 139-259 (267)
193 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00024 8.2E-09 74.0 17.5 175 130-333 12-223 (322)
194 3pxg_A Negative regulator of g 97.9 0.00011 3.9E-09 80.8 15.3 147 130-302 180-340 (468)
195 3eie_A Vacuolar protein sortin 97.9 9.2E-05 3.1E-09 77.3 13.9 173 130-333 18-228 (322)
196 3u61_B DNA polymerase accessor 97.9 7E-05 2.4E-09 78.4 13.0 170 130-331 26-214 (324)
197 3e4g_A ATP synthase subunit S, 97.9 7.2E-06 2.5E-10 76.1 4.5 84 540-624 61-151 (176)
198 2qp9_X Vacuolar protein sortin 97.9 0.00015 5E-09 76.7 14.6 173 131-333 52-261 (355)
199 2w58_A DNAI, primosome compone 97.8 4.4E-05 1.5E-09 73.8 9.0 116 131-269 26-158 (202)
200 1a5t_A Delta prime, HOLB; zinc 97.8 0.00028 9.5E-09 74.0 15.6 167 135-332 7-204 (334)
201 3vfd_A Spastin; ATPase, microt 97.8 0.00054 1.8E-08 73.5 18.2 173 131-333 116-326 (389)
202 1qvr_A CLPB protein; coiled co 97.8 7.4E-05 2.5E-09 88.9 11.9 153 130-300 170-345 (854)
203 4fs7_A Uncharacterized protein 97.8 0.00013 4.5E-09 78.6 12.9 106 511-622 157-263 (394)
204 3ec2_A DNA replication protein 97.8 2.8E-05 9.7E-10 73.6 6.5 113 135-269 19-142 (180)
205 1io0_A Tropomodulin; LRR prote 97.8 1.1E-05 3.8E-10 76.8 3.5 119 534-662 30-165 (185)
206 4h09_A Hypothetical leucine ri 97.7 0.00045 1.6E-08 73.9 16.1 121 492-621 46-167 (379)
207 2zan_A Vacuolar protein sortin 97.7 0.00053 1.8E-08 74.8 16.6 175 130-333 134-345 (444)
208 4b4t_J 26S protease regulatory 97.7 0.00027 9.1E-09 74.5 13.6 168 130-326 148-354 (405)
209 3pxi_A Negative regulator of g 97.7 0.00029 1E-08 82.7 15.4 148 130-302 180-340 (758)
210 4gt6_A Cell surface protein; l 97.7 0.00092 3.2E-08 71.9 17.5 264 490-778 85-386 (394)
211 4b4t_H 26S protease regulatory 97.7 0.00047 1.6E-08 73.7 14.3 168 130-326 209-415 (467)
212 3rw6_A Nuclear RNA export fact 97.7 4E-05 1.4E-09 76.8 5.7 78 515-594 169-258 (267)
213 3hu3_A Transitional endoplasmi 97.6 0.00036 1.2E-08 76.7 13.4 166 131-325 205-406 (489)
214 1lv7_A FTSH; alpha/beta domain 97.6 0.0023 8E-08 64.1 17.8 170 131-329 13-221 (257)
215 4b4t_L 26S protease subunit RP 97.6 0.00034 1.1E-08 75.0 11.8 168 130-326 181-387 (437)
216 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00069 2.4E-08 79.7 15.7 153 130-300 186-362 (758)
217 2gno_A DNA polymerase III, gam 97.5 0.00076 2.6E-08 69.3 13.3 143 134-300 1-152 (305)
218 2r62_A Cell division protease 97.5 7.1E-05 2.4E-09 76.0 5.5 45 131-175 12-68 (268)
219 4b4t_M 26S protease regulatory 97.5 0.00029 9.8E-09 75.5 10.2 167 130-326 181-387 (434)
220 4b4t_I 26S protease regulatory 97.5 0.0007 2.4E-08 71.6 12.7 167 130-326 182-388 (437)
221 1in4_A RUVB, holliday junction 97.5 0.0017 5.9E-08 67.9 15.2 166 131-332 26-222 (334)
222 4b4t_K 26S protease regulatory 97.4 0.00089 3E-08 71.7 12.7 168 130-326 172-379 (428)
223 2kjq_A DNAA-related protein; s 97.4 6.1E-05 2.1E-09 68.6 3.1 55 131-191 19-73 (149)
224 1ofh_A ATP-dependent HSL prote 97.4 0.0015 5.3E-08 67.5 14.2 45 131-175 16-74 (310)
225 2ce7_A Cell division protein F 97.4 0.0013 4.3E-08 71.7 13.5 167 131-326 17-221 (476)
226 4fcw_A Chaperone protein CLPB; 97.4 0.0007 2.4E-08 70.2 10.9 60 131-193 18-86 (311)
227 2dhr_A FTSH; AAA+ protein, hex 96.9 0.011 3.6E-07 64.9 15.3 163 131-326 32-236 (499)
228 3cf2_A TER ATPase, transitiona 96.9 0.0049 1.7E-07 71.2 13.1 168 131-327 205-408 (806)
229 3hr8_A Protein RECA; alpha and 96.9 0.0081 2.8E-07 62.6 13.3 89 151-247 61-151 (356)
230 1ojl_A Transcriptional regulat 96.9 0.0022 7.4E-08 66.0 8.9 45 131-175 3-49 (304)
231 3t15_A Ribulose bisphosphate c 96.9 0.008 2.7E-07 61.4 12.9 26 150-175 35-60 (293)
232 2x8a_A Nuclear valosin-contain 96.9 0.021 7.2E-07 57.6 15.9 145 131-301 11-192 (274)
233 1ixz_A ATP-dependent metallopr 96.8 0.015 5.1E-07 58.0 14.2 45 131-175 17-73 (254)
234 1ypw_A Transitional endoplasmi 96.8 0.0051 1.7E-07 72.2 11.5 149 130-303 204-388 (806)
235 3pxi_A Negative regulator of g 96.7 0.0053 1.8E-07 72.0 11.1 59 131-192 492-559 (758)
236 3n70_A Transport activator; si 96.7 0.0012 4.1E-08 59.7 4.4 45 131-175 2-48 (145)
237 1iy2_A ATP-dependent metallopr 96.6 0.023 7.8E-07 57.5 14.1 46 130-175 40-97 (278)
238 3m6a_A ATP-dependent protease 96.6 0.011 3.7E-07 66.1 12.1 45 131-175 82-132 (543)
239 2cvh_A DNA repair and recombin 96.5 0.0064 2.2E-07 59.1 9.0 90 151-247 20-117 (220)
240 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.0023 7.7E-08 65.1 5.5 69 152-247 124-194 (331)
241 4h09_A Hypothetical leucine ri 96.5 0.0088 3E-07 63.7 10.6 103 513-620 237-341 (379)
242 2zr9_A Protein RECA, recombina 96.5 0.019 6.5E-07 60.0 12.7 89 151-247 61-151 (349)
243 1xp8_A RECA protein, recombina 96.4 0.028 9.5E-07 59.0 13.5 89 151-247 74-164 (366)
244 1u94_A RECA protein, recombina 96.4 0.019 6.4E-07 60.2 12.0 90 150-247 62-153 (356)
245 3io5_A Recombination and repai 96.4 0.012 4.2E-07 59.4 9.8 90 152-247 29-123 (333)
246 2z43_A DNA repair and recombin 96.3 0.0078 2.7E-07 62.5 8.4 95 151-246 107-214 (324)
247 2c9o_A RUVB-like 1; hexameric 96.1 0.011 3.6E-07 64.8 8.7 46 130-175 37-87 (456)
248 3co5_A Putative two-component 96.1 0.0017 5.7E-08 58.5 1.6 45 131-175 5-51 (143)
249 1v5w_A DMC1, meiotic recombina 96.0 0.026 9E-07 58.9 10.6 96 150-246 121-230 (343)
250 1n0w_A DNA repair protein RAD5 96.0 0.015 5.3E-07 57.3 8.4 95 151-247 24-131 (243)
251 2qgz_A Helicase loader, putati 96.0 0.0076 2.6E-07 62.0 6.2 41 135-175 133-176 (308)
252 3dm5_A SRP54, signal recogniti 95.9 0.029 9.9E-07 60.1 10.6 26 150-175 99-124 (443)
253 1r6b_X CLPA protein; AAA+, N-t 95.9 0.016 5.5E-07 68.0 9.4 56 131-192 459-523 (758)
254 1rz3_A Hypothetical protein rb 95.9 0.009 3.1E-07 57.2 5.9 42 134-175 2-46 (201)
255 2i1q_A DNA repair and recombin 95.8 0.013 4.5E-07 60.8 7.3 95 151-246 98-215 (322)
256 3rfe_A Platelet glycoprotein I 95.8 0.011 3.7E-07 52.0 5.6 52 544-598 12-66 (130)
257 1vma_A Cell division protein F 95.8 0.021 7.2E-07 58.4 8.3 91 150-245 103-196 (306)
258 1qvr_A CLPB protein; coiled co 95.8 0.018 6.2E-07 68.3 9.0 59 131-192 559-626 (854)
259 2b8t_A Thymidine kinase; deoxy 95.7 0.0042 1.4E-07 60.2 2.8 114 150-271 11-127 (223)
260 2bjv_A PSP operon transcriptio 95.7 0.0091 3.1E-07 60.1 5.5 59 131-192 7-67 (265)
261 3e70_C DPA, signal recognition 95.7 0.048 1.6E-06 56.3 11.0 58 149-209 127-185 (328)
262 3ice_A Transcription terminati 95.7 0.013 4.6E-07 60.7 6.6 45 149-194 172-216 (422)
263 3kl4_A SRP54, signal recogniti 95.7 0.037 1.3E-06 59.2 10.3 92 150-245 96-189 (433)
264 2px0_A Flagellar biosynthesis 95.6 0.041 1.4E-06 56.0 9.8 86 150-243 104-190 (296)
265 2w0m_A SSO2452; RECA, SSPF, un 95.5 0.031 1.1E-06 54.6 8.4 53 151-209 23-75 (235)
266 3c8u_A Fructokinase; YP_612366 95.5 0.013 4.4E-07 56.5 5.2 39 137-175 6-46 (208)
267 4a74_A DNA repair and recombin 95.5 0.041 1.4E-06 53.6 9.1 58 151-209 25-85 (231)
268 2xxa_A Signal recognition part 95.2 0.14 4.7E-06 55.1 12.7 92 150-244 99-192 (433)
269 3rfe_A Platelet glycoprotein I 95.2 0.028 9.7E-07 49.3 6.0 54 568-624 12-67 (130)
270 2ck3_D ATP synthase subunit be 95.1 0.044 1.5E-06 58.7 8.3 63 142-206 143-207 (482)
271 2hf9_A Probable hydrogenase ni 95.1 0.024 8.2E-07 55.3 5.9 40 136-175 23-62 (226)
272 1fx0_B ATP synthase beta chain 95.1 0.052 1.8E-06 58.4 8.8 96 149-246 163-277 (498)
273 3lda_A DNA repair protein RAD5 95.1 0.045 1.5E-06 58.2 8.2 59 151-210 178-239 (400)
274 1g5t_A COB(I)alamin adenosyltr 95.0 0.021 7.3E-07 53.6 5.0 112 152-270 29-163 (196)
275 1qhx_A CPT, protein (chloramph 95.0 0.012 4.1E-07 55.0 3.4 24 152-175 4-27 (178)
276 3kb2_A SPBC2 prophage-derived 95.0 0.013 4.3E-07 54.4 3.5 24 152-175 2-25 (173)
277 1sky_E F1-ATPase, F1-ATP synth 95.0 0.098 3.3E-06 56.2 10.6 52 152-205 152-204 (473)
278 2r44_A Uncharacterized protein 95.0 0.019 6.7E-07 59.7 5.2 43 131-175 28-70 (331)
279 1pzn_A RAD51, DNA repair and r 95.0 0.061 2.1E-06 56.2 8.9 97 150-247 130-243 (349)
280 2ga8_A Hypothetical 39.9 kDa p 95.0 0.029 9.8E-07 58.0 6.1 43 133-175 2-48 (359)
281 1j8m_F SRP54, signal recogniti 94.9 0.13 4.6E-06 52.2 11.1 90 151-244 98-189 (297)
282 2wsm_A Hydrogenase expression/ 94.9 0.023 8E-07 55.1 5.1 44 132-175 11-54 (221)
283 1jr3_D DNA polymerase III, del 94.9 0.21 7.3E-06 52.0 12.9 160 142-332 9-184 (343)
284 2dr3_A UPF0273 protein PH0284; 94.8 0.097 3.3E-06 51.6 9.7 47 151-202 23-69 (247)
285 3lw7_A Adenylate kinase relate 94.8 0.013 4.6E-07 54.4 3.1 20 152-171 2-21 (179)
286 3fwy_A Light-independent proto 94.8 0.015 5E-07 59.9 3.5 41 149-192 46-86 (314)
287 2ffh_A Protein (FFH); SRP54, s 94.8 0.12 4.2E-06 55.1 10.8 89 151-244 98-189 (425)
288 3vaa_A Shikimate kinase, SK; s 94.8 0.016 5.5E-07 55.3 3.6 26 150-175 24-49 (199)
289 1nlf_A Regulatory protein REPA 94.8 0.089 3.1E-06 53.1 9.4 43 151-193 30-79 (279)
290 1zp6_A Hypothetical protein AT 94.8 0.016 5.4E-07 54.8 3.5 25 150-174 8-32 (191)
291 2ehv_A Hypothetical protein PH 94.8 0.029 9.9E-07 55.6 5.6 24 151-174 30-53 (251)
292 2yhs_A FTSY, cell division pro 94.7 0.12 4E-06 56.0 10.3 26 150-175 292-317 (503)
293 3cf2_A TER ATPase, transitiona 94.7 0.063 2.1E-06 62.0 8.7 166 131-325 478-682 (806)
294 3uie_A Adenylyl-sulfate kinase 94.7 0.023 7.7E-07 54.3 4.3 27 149-175 23-49 (200)
295 1ly1_A Polynucleotide kinase; 94.6 0.019 6.4E-07 53.7 3.5 22 152-173 3-24 (181)
296 1kgd_A CASK, peripheral plasma 94.6 0.018 6.1E-07 54.0 3.4 24 152-175 6-29 (180)
297 1odf_A YGR205W, hypothetical 3 94.6 0.037 1.3E-06 56.2 5.8 56 149-204 29-84 (290)
298 1kag_A SKI, shikimate kinase I 94.6 0.015 5.2E-07 53.9 2.7 24 152-175 5-28 (173)
299 3trf_A Shikimate kinase, SK; a 94.5 0.019 6.7E-07 53.9 3.5 25 151-175 5-29 (185)
300 4eun_A Thermoresistant glucoki 94.5 0.021 7.2E-07 54.5 3.6 27 149-175 27-53 (200)
301 3sr0_A Adenylate kinase; phosp 94.5 0.093 3.2E-06 50.1 8.1 23 153-175 2-24 (206)
302 2rhm_A Putative kinase; P-loop 94.4 0.026 9E-07 53.3 4.2 25 151-175 5-29 (193)
303 1nks_A Adenylate kinase; therm 94.4 0.024 8.1E-07 53.6 3.8 24 152-175 2-25 (194)
304 2yvu_A Probable adenylyl-sulfa 94.4 0.024 8.1E-07 53.4 3.8 26 150-175 12-37 (186)
305 2j37_W Signal recognition part 94.4 0.31 1E-05 53.3 12.9 26 150-175 100-125 (504)
306 1zu4_A FTSY; GTPase, signal re 94.4 0.11 3.6E-06 53.5 8.8 38 150-190 104-141 (320)
307 3t61_A Gluconokinase; PSI-biol 94.4 0.018 6.1E-07 55.1 2.8 25 151-175 18-42 (202)
308 1knq_A Gluconate kinase; ALFA/ 94.3 0.026 9E-07 52.5 3.7 25 151-175 8-32 (175)
309 3cmu_A Protein RECA, recombina 94.3 0.082 2.8E-06 66.7 9.0 88 150-245 1426-1515(2050)
310 1g8p_A Magnesium-chelatase 38 94.3 0.022 7.4E-07 59.9 3.4 45 131-175 25-69 (350)
311 3bh0_A DNAB-like replicative h 94.2 0.15 5.2E-06 52.4 9.6 51 151-206 68-118 (315)
312 2ze6_A Isopentenyl transferase 94.2 0.027 9.2E-07 56.0 3.8 24 152-175 2-25 (253)
313 1kht_A Adenylate kinase; phosp 94.2 0.026 8.9E-07 53.3 3.4 24 152-175 4-27 (192)
314 3hws_A ATP-dependent CLP prote 94.1 0.031 1.1E-06 59.0 4.4 45 131-175 16-75 (363)
315 3iij_A Coilin-interacting nucl 94.1 0.023 7.7E-07 53.2 2.9 25 151-175 11-35 (180)
316 1xjc_A MOBB protein homolog; s 94.1 0.048 1.7E-06 50.1 5.0 26 150-175 3-28 (169)
317 3tr0_A Guanylate kinase, GMP k 94.1 0.024 8.2E-07 54.3 3.2 25 151-175 7-31 (205)
318 1ls1_A Signal recognition part 94.1 0.097 3.3E-06 53.2 7.8 90 151-244 98-189 (295)
319 2bdt_A BH3686; alpha-beta prot 94.1 0.027 9.4E-07 53.1 3.5 22 152-173 3-24 (189)
320 1um8_A ATP-dependent CLP prote 94.1 0.041 1.4E-06 58.4 5.2 45 131-175 22-96 (376)
321 3asz_A Uridine kinase; cytidin 94.1 0.03 1E-06 53.9 3.8 26 150-175 5-30 (211)
322 3nbx_X ATPase RAVA; AAA+ ATPas 94.1 0.035 1.2E-06 60.8 4.6 43 131-175 23-65 (500)
323 1via_A Shikimate kinase; struc 94.0 0.024 8.3E-07 52.7 2.9 24 152-175 5-28 (175)
324 1zuh_A Shikimate kinase; alpha 94.0 0.03 1E-06 51.7 3.4 25 151-175 7-31 (168)
325 1ye8_A Protein THEP1, hypothet 94.0 0.031 1.1E-06 52.1 3.6 23 153-175 2-24 (178)
326 3a00_A Guanylate kinase, GMP k 94.0 0.022 7.7E-07 53.6 2.6 24 152-175 2-25 (186)
327 2c95_A Adenylate kinase 1; tra 94.0 0.034 1.2E-06 52.7 3.9 26 150-175 8-33 (196)
328 1gvn_B Zeta; postsegregational 94.0 0.055 1.9E-06 54.9 5.6 26 150-175 32-57 (287)
329 3tau_A Guanylate kinase, GMP k 94.0 0.03 1E-06 53.8 3.5 26 150-175 7-32 (208)
330 1tev_A UMP-CMP kinase; ploop, 94.0 0.034 1.1E-06 52.7 3.8 25 151-175 3-27 (196)
331 2jaq_A Deoxyguanosine kinase; 94.0 0.031 1E-06 53.4 3.5 23 153-175 2-24 (205)
332 1y63_A LMAJ004144AAA protein; 93.9 0.033 1.1E-06 52.3 3.6 24 151-174 10-33 (184)
333 2bbw_A Adenylate kinase 4, AK4 93.9 0.033 1.1E-06 55.2 3.7 26 150-175 26-51 (246)
334 2qor_A Guanylate kinase; phosp 93.9 0.027 9.2E-07 54.0 2.9 26 150-175 11-36 (204)
335 1ukz_A Uridylate kinase; trans 93.9 0.037 1.3E-06 52.9 3.9 26 150-175 14-39 (203)
336 1cke_A CK, MSSA, protein (cyti 93.9 0.032 1.1E-06 54.4 3.6 24 152-175 6-29 (227)
337 2plr_A DTMP kinase, probable t 93.9 0.081 2.8E-06 50.7 6.4 25 151-175 4-28 (213)
338 1nn5_A Similar to deoxythymidy 93.9 0.083 2.8E-06 50.8 6.5 32 151-184 9-40 (215)
339 4a1f_A DNAB helicase, replicat 93.8 0.16 5.6E-06 52.3 8.9 52 151-207 46-97 (338)
340 2if2_A Dephospho-COA kinase; a 93.8 0.032 1.1E-06 53.4 3.4 22 152-173 2-23 (204)
341 1uf9_A TT1252 protein; P-loop, 93.8 0.037 1.3E-06 52.8 3.9 26 149-174 6-31 (203)
342 2p5t_B PEZT; postsegregational 93.8 0.052 1.8E-06 54.0 5.0 26 150-175 31-56 (253)
343 2j41_A Guanylate kinase; GMP, 93.8 0.033 1.1E-06 53.3 3.5 25 151-175 6-30 (207)
344 3umf_A Adenylate kinase; rossm 93.8 0.04 1.4E-06 53.1 4.0 27 149-175 27-53 (217)
345 3tlx_A Adenylate kinase 2; str 93.8 0.078 2.7E-06 52.3 6.2 42 134-175 10-53 (243)
346 3cm0_A Adenylate kinase; ATP-b 93.8 0.038 1.3E-06 51.9 3.7 25 151-175 4-28 (186)
347 3tqc_A Pantothenate kinase; bi 93.8 0.058 2E-06 55.3 5.3 99 132-235 69-171 (321)
348 2iyv_A Shikimate kinase, SK; t 93.8 0.027 9.2E-07 52.9 2.7 24 152-175 3-26 (184)
349 2qt1_A Nicotinamide riboside k 93.7 0.037 1.3E-06 53.1 3.6 26 150-175 20-45 (207)
350 2bwj_A Adenylate kinase 5; pho 93.7 0.037 1.3E-06 52.6 3.6 25 151-175 12-36 (199)
351 3jvv_A Twitching mobility prot 93.7 0.013 4.6E-07 61.2 0.4 114 149-273 121-234 (356)
352 1lvg_A Guanylate kinase, GMP k 93.7 0.03 1E-06 53.3 2.9 24 152-175 5-28 (198)
353 1pgv_A TMD-1, tropomodulin TMD 93.7 0.042 1.4E-06 51.8 3.7 17 642-658 151-167 (197)
354 3a4m_A L-seryl-tRNA(SEC) kinas 93.6 0.04 1.4E-06 55.1 3.8 25 151-175 4-28 (260)
355 3l0o_A Transcription terminati 93.6 0.036 1.2E-06 57.4 3.5 52 141-193 164-216 (427)
356 1e6c_A Shikimate kinase; phosp 93.6 0.032 1.1E-06 51.6 2.9 24 152-175 3-26 (173)
357 1ex7_A Guanylate kinase; subst 93.6 0.03 1E-06 52.4 2.6 24 152-175 2-25 (186)
358 4gp7_A Metallophosphoesterase; 93.6 0.032 1.1E-06 51.7 2.8 23 150-172 8-30 (171)
359 1qf9_A UMP/CMP kinase, protein 93.6 0.045 1.5E-06 51.7 3.9 25 151-175 6-30 (194)
360 1ypw_A Transitional endoplasmi 93.5 0.013 4.5E-07 68.7 -0.0 46 130-175 477-535 (806)
361 1htw_A HI0065; nucleotide-bind 93.5 0.043 1.5E-06 50.0 3.5 27 149-175 31-57 (158)
362 1jjv_A Dephospho-COA kinase; P 93.5 0.036 1.2E-06 53.1 3.1 22 152-173 3-24 (206)
363 2vli_A Antibiotic resistance p 93.5 0.031 1.1E-06 52.3 2.5 25 151-175 5-29 (183)
364 2grj_A Dephospho-COA kinase; T 93.5 0.045 1.6E-06 51.7 3.6 26 150-175 11-36 (192)
365 3ney_A 55 kDa erythrocyte memb 93.4 0.043 1.5E-06 51.9 3.4 26 150-175 18-43 (197)
366 1g41_A Heat shock protein HSLU 93.4 0.056 1.9E-06 57.9 4.7 45 131-175 16-74 (444)
367 1znw_A Guanylate kinase, GMP k 93.4 0.04 1.4E-06 52.9 3.2 26 150-175 19-44 (207)
368 2pt5_A Shikimate kinase, SK; a 93.4 0.045 1.5E-06 50.4 3.5 23 153-175 2-24 (168)
369 2cdn_A Adenylate kinase; phosp 93.4 0.045 1.5E-06 52.2 3.6 25 151-175 20-44 (201)
370 3aez_A Pantothenate kinase; tr 93.4 0.046 1.6E-06 56.1 3.8 43 149-192 88-130 (312)
371 2z0h_A DTMP kinase, thymidylat 93.3 0.1 3.5E-06 49.4 6.0 23 153-175 2-24 (197)
372 1uj2_A Uridine-cytidine kinase 93.3 0.048 1.7E-06 54.2 3.8 27 149-175 20-46 (252)
373 2jeo_A Uridine-cytidine kinase 93.3 0.049 1.7E-06 53.9 3.8 27 149-175 23-49 (245)
374 1q57_A DNA primase/helicase; d 93.3 0.38 1.3E-05 53.1 11.4 56 151-210 242-298 (503)
375 2pbr_A DTMP kinase, thymidylat 93.3 0.048 1.6E-06 51.6 3.5 23 153-175 2-24 (195)
376 1gtv_A TMK, thymidylate kinase 93.2 0.032 1.1E-06 53.8 2.3 24 152-175 1-24 (214)
377 2wwf_A Thymidilate kinase, put 93.2 0.052 1.8E-06 52.2 3.8 32 151-184 10-41 (212)
378 1rj9_A FTSY, signal recognitio 93.1 0.071 2.4E-06 54.4 4.8 26 150-175 101-126 (304)
379 3end_A Light-independent proto 93.1 0.082 2.8E-06 54.2 5.3 43 148-193 38-80 (307)
380 3vr4_D V-type sodium ATPase su 93.1 0.066 2.3E-06 57.0 4.5 93 151-246 151-259 (465)
381 1z6g_A Guanylate kinase; struc 93.1 0.039 1.4E-06 53.4 2.6 25 151-175 23-47 (218)
382 3fb4_A Adenylate kinase; psych 93.0 0.053 1.8E-06 52.3 3.6 23 153-175 2-24 (216)
383 4e22_A Cytidylate kinase; P-lo 93.0 0.051 1.7E-06 54.0 3.4 26 150-175 26-51 (252)
384 1aky_A Adenylate kinase; ATP:A 93.0 0.058 2E-06 52.3 3.7 25 151-175 4-28 (220)
385 1zak_A Adenylate kinase; ATP:A 92.9 0.052 1.8E-06 52.7 3.3 25 151-175 5-29 (222)
386 1zd8_A GTP:AMP phosphotransfer 92.9 0.055 1.9E-06 52.7 3.5 25 151-175 7-31 (227)
387 2f1r_A Molybdopterin-guanine d 92.9 0.045 1.5E-06 50.6 2.6 25 152-176 3-27 (171)
388 1tue_A Replication protein E1; 92.9 0.1 3.5E-06 49.2 5.0 38 138-175 44-82 (212)
389 1s96_A Guanylate kinase, GMP k 92.8 0.054 1.8E-06 52.4 3.2 26 150-175 15-40 (219)
390 1m7g_A Adenylylsulfate kinase; 92.7 0.11 3.8E-06 49.9 5.3 27 149-175 23-49 (211)
391 2v3c_C SRP54, signal recogniti 92.7 0.049 1.7E-06 58.5 2.9 26 151-176 99-124 (432)
392 1sq5_A Pantothenate kinase; P- 92.7 0.12 3.9E-06 53.1 5.6 83 149-236 78-160 (308)
393 3dl0_A Adenylate kinase; phosp 92.7 0.059 2E-06 52.0 3.2 23 153-175 2-24 (216)
394 2pez_A Bifunctional 3'-phospho 92.7 0.066 2.2E-06 49.9 3.5 25 151-175 5-29 (179)
395 2i3b_A HCR-ntpase, human cance 92.6 0.057 1.9E-06 50.9 2.9 24 152-175 2-25 (189)
396 1vht_A Dephospho-COA kinase; s 92.5 0.075 2.6E-06 51.4 3.8 23 151-173 4-26 (218)
397 2f6r_A COA synthase, bifunctio 92.5 0.071 2.4E-06 53.9 3.7 23 150-172 74-96 (281)
398 3p32_A Probable GTPase RV1496/ 92.4 0.22 7.5E-06 52.2 7.5 37 139-175 65-103 (355)
399 3b9q_A Chloroplast SRP recepto 92.4 0.082 2.8E-06 53.9 4.0 26 150-175 99-124 (302)
400 2v54_A DTMP kinase, thymidylat 92.4 0.068 2.3E-06 51.0 3.2 25 151-175 4-28 (204)
401 3nwj_A ATSK2; P loop, shikimat 92.3 0.062 2.1E-06 53.1 2.9 25 151-175 48-72 (250)
402 1np6_A Molybdopterin-guanine d 92.3 0.081 2.8E-06 49.0 3.5 25 151-175 6-30 (174)
403 2onk_A Molybdate/tungstate ABC 92.3 0.068 2.3E-06 52.5 3.1 26 149-175 23-48 (240)
404 3r20_A Cytidylate kinase; stru 92.3 0.08 2.7E-06 51.5 3.6 25 151-175 9-33 (233)
405 3k1j_A LON protease, ATP-depen 92.3 0.087 3E-06 59.7 4.4 43 131-175 42-84 (604)
406 4eaq_A DTMP kinase, thymidylat 92.2 0.18 6.1E-06 49.1 6.1 26 150-175 25-50 (229)
407 3ake_A Cytidylate kinase; CMP 92.2 0.081 2.8E-06 50.6 3.6 23 153-175 4-26 (208)
408 3d3q_A TRNA delta(2)-isopenten 92.2 0.08 2.7E-06 54.5 3.6 24 152-175 8-31 (340)
409 1cr0_A DNA primase/helicase; R 92.1 0.2 6.8E-06 51.0 6.6 53 150-206 34-86 (296)
410 3be4_A Adenylate kinase; malar 92.1 0.088 3E-06 50.9 3.7 24 152-175 6-29 (217)
411 1e4v_A Adenylate kinase; trans 92.1 0.088 3E-06 50.7 3.6 23 153-175 2-24 (214)
412 3io3_A DEHA2D07832P; chaperone 92.1 0.17 5.8E-06 52.6 6.0 49 146-195 13-61 (348)
413 3iqw_A Tail-anchored protein t 92.1 0.2 6.7E-06 51.8 6.4 49 146-197 11-59 (334)
414 3lnc_A Guanylate kinase, GMP k 92.0 0.051 1.8E-06 53.1 1.9 25 151-175 27-52 (231)
415 3b85_A Phosphate starvation-in 92.0 0.069 2.4E-06 51.2 2.7 23 152-174 23-45 (208)
416 1pgv_A TMD-1, tropomodulin TMD 92.0 0.13 4.4E-06 48.4 4.5 108 513-623 38-168 (197)
417 2pcj_A ABC transporter, lipopr 92.0 0.068 2.3E-06 51.9 2.7 25 151-175 30-54 (224)
418 2xb4_A Adenylate kinase; ATP-b 91.9 0.09 3.1E-06 51.0 3.5 23 153-175 2-24 (223)
419 3tif_A Uncharacterized ABC tra 91.9 0.077 2.6E-06 52.0 2.9 35 150-188 30-64 (235)
420 1ak2_A Adenylate kinase isoenz 91.9 0.1 3.4E-06 51.1 3.8 25 151-175 16-40 (233)
421 2q6t_A DNAB replication FORK h 91.8 0.86 2.9E-05 49.3 11.5 56 151-210 200-256 (444)
422 3lv8_A DTMP kinase, thymidylat 91.8 0.25 8.5E-06 48.2 6.5 37 151-189 27-63 (236)
423 2og2_A Putative signal recogni 91.7 0.12 4.2E-06 53.8 4.5 26 150-175 156-181 (359)
424 3cmu_A Protein RECA, recombina 91.6 0.29 9.9E-06 61.9 8.3 90 150-247 1080-1171(2050)
425 2c61_A A-type ATP synthase non 91.6 0.14 4.9E-06 54.7 4.8 97 150-246 151-260 (469)
426 4tmk_A Protein (thymidylate ki 91.5 0.3 1E-05 46.8 6.6 52 152-205 4-55 (213)
427 3crm_A TRNA delta(2)-isopenten 91.5 0.11 3.6E-06 53.2 3.6 24 152-175 6-29 (323)
428 3gfo_A Cobalt import ATP-bindi 91.5 0.08 2.7E-06 53.1 2.6 25 151-175 34-58 (275)
429 1b0u_A Histidine permease; ABC 91.4 0.082 2.8E-06 52.7 2.6 26 150-175 31-56 (262)
430 2d2e_A SUFC protein; ABC-ATPas 91.4 0.097 3.3E-06 51.8 3.1 24 151-174 29-52 (250)
431 2cbz_A Multidrug resistance-as 91.4 0.083 2.8E-06 51.8 2.6 26 150-175 30-55 (237)
432 1oix_A RAS-related protein RAB 91.3 0.11 3.8E-06 48.9 3.4 25 151-175 29-53 (191)
433 1a7j_A Phosphoribulokinase; tr 91.3 0.07 2.4E-06 54.1 2.1 26 150-175 4-29 (290)
434 1ji0_A ABC transporter; ATP bi 91.2 0.087 3E-06 51.8 2.6 25 151-175 32-56 (240)
435 2zu0_C Probable ATP-dependent 91.2 0.1 3.5E-06 52.2 3.1 25 150-174 45-69 (267)
436 1cp2_A CP2, nitrogenase iron p 91.2 0.23 7.9E-06 49.6 5.8 38 152-192 2-39 (269)
437 2r8r_A Sensor protein; KDPD, P 91.2 0.2 7E-06 48.0 5.0 38 152-192 7-44 (228)
438 3gqb_B V-type ATP synthase bet 91.2 0.14 4.8E-06 54.5 4.2 97 150-246 146-262 (464)
439 1g6h_A High-affinity branched- 91.2 0.089 3E-06 52.3 2.6 25 151-175 33-57 (257)
440 4g1u_C Hemin import ATP-bindin 91.2 0.088 3E-06 52.6 2.6 26 150-175 36-61 (266)
441 2olj_A Amino acid ABC transpor 91.1 0.09 3.1E-06 52.4 2.6 26 150-175 49-74 (263)
442 1sgw_A Putative ABC transporte 91.1 0.077 2.6E-06 51.0 2.0 25 151-175 35-59 (214)
443 3exa_A TRNA delta(2)-isopenten 91.1 0.11 3.8E-06 52.5 3.3 25 151-175 3-27 (322)
444 1mv5_A LMRA, multidrug resista 91.1 0.097 3.3E-06 51.6 2.8 26 150-175 27-52 (243)
445 2pze_A Cystic fibrosis transme 91.1 0.09 3.1E-06 51.3 2.5 25 151-175 34-58 (229)
446 3hjn_A DTMP kinase, thymidylat 91.1 0.46 1.6E-05 44.9 7.4 49 153-204 2-50 (197)
447 1yrb_A ATP(GTP)binding protein 91.1 0.14 4.7E-06 51.1 4.0 26 150-175 13-38 (262)
448 3bgw_A DNAB-like replicative h 91.0 0.63 2.2E-05 50.2 9.3 51 151-206 197-247 (444)
449 1vpl_A ABC transporter, ATP-bi 91.0 0.096 3.3E-06 52.0 2.6 26 150-175 40-65 (256)
450 2ff7_A Alpha-hemolysin translo 91.0 0.097 3.3E-06 51.7 2.6 25 151-175 35-59 (247)
451 4edh_A DTMP kinase, thymidylat 90.9 0.38 1.3E-05 46.1 6.8 33 151-185 6-38 (213)
452 3mfy_A V-type ATP synthase alp 90.9 0.69 2.4E-05 50.3 9.3 57 142-203 217-275 (588)
453 3a8t_A Adenylate isopentenyltr 90.9 0.1 3.5E-06 53.5 2.8 25 151-175 40-64 (339)
454 2eyu_A Twitching motility prot 90.8 0.13 4.5E-06 51.2 3.5 27 149-175 23-49 (261)
455 3foz_A TRNA delta(2)-isopenten 90.8 0.14 4.6E-06 51.8 3.5 26 150-175 9-34 (316)
456 2qi9_C Vitamin B12 import ATP- 90.7 0.1 3.6E-06 51.5 2.6 25 151-175 26-50 (249)
457 1ltq_A Polynucleotide kinase; 90.7 0.13 4.5E-06 52.5 3.5 23 152-174 3-25 (301)
458 4dzz_A Plasmid partitioning pr 90.7 0.43 1.5E-05 45.2 7.0 43 152-197 2-45 (206)
459 2afh_E Nitrogenase iron protei 90.7 0.22 7.4E-06 50.5 5.1 39 151-192 2-40 (289)
460 1g8f_A Sulfate adenylyltransfe 90.7 0.21 7.1E-06 54.6 5.2 44 132-175 374-419 (511)
461 2r6a_A DNAB helicase, replicat 90.6 0.52 1.8E-05 51.1 8.4 50 151-204 203-252 (454)
462 1tq4_A IIGP1, interferon-induc 90.6 0.21 7.1E-06 53.2 5.0 26 149-174 67-92 (413)
463 2ghi_A Transport protein; mult 90.6 0.11 3.7E-06 51.8 2.6 26 150-175 45-70 (260)
464 2ixe_A Antigen peptide transpo 90.6 0.11 3.7E-06 52.2 2.6 26 150-175 44-69 (271)
465 1q3t_A Cytidylate kinase; nucl 90.5 0.16 5.6E-06 49.7 3.8 26 150-175 15-40 (236)
466 2v9p_A Replication protein E1; 90.5 0.13 4.6E-06 52.1 3.3 27 149-175 124-150 (305)
467 2nq2_C Hypothetical ABC transp 90.5 0.11 3.8E-06 51.4 2.6 25 151-175 31-55 (253)
468 2yz2_A Putative ABC transporte 90.5 0.11 3.8E-06 51.9 2.6 26 150-175 32-57 (266)
469 2ihy_A ABC transporter, ATP-bi 90.5 0.11 3.8E-06 52.3 2.6 26 150-175 46-71 (279)
470 3cr8_A Sulfate adenylyltranfer 90.5 0.26 8.9E-06 54.6 5.7 26 150-175 368-393 (552)
471 3sop_A Neuronal-specific septi 90.5 0.14 4.9E-06 51.2 3.4 23 153-175 4-26 (270)
472 2f9l_A RAB11B, member RAS onco 90.4 0.14 4.9E-06 48.5 3.2 24 151-174 5-28 (199)
473 2dyk_A GTP-binding protein; GT 90.4 0.17 5.7E-06 45.8 3.5 23 152-174 2-24 (161)
474 1p9r_A General secretion pathw 90.4 0.42 1.4E-05 51.0 7.1 28 148-175 164-191 (418)
475 2r9v_A ATP synthase subunit al 90.3 0.27 9.1E-06 53.0 5.5 93 149-246 173-278 (515)
476 2wji_A Ferrous iron transport 90.3 0.14 4.9E-06 46.8 3.0 23 152-174 4-26 (165)
477 1nij_A Hypothetical protein YJ 90.2 0.15 5.2E-06 52.5 3.5 26 150-175 3-28 (318)
478 3upu_A ATP-dependent DNA helic 90.2 0.51 1.8E-05 51.3 7.9 42 134-176 29-70 (459)
479 2ocp_A DGK, deoxyguanosine kin 90.2 0.19 6.4E-06 49.4 3.9 25 151-175 2-26 (241)
480 3oaa_A ATP synthase subunit al 90.1 0.69 2.4E-05 49.7 8.4 93 149-246 160-265 (513)
481 3ld9_A DTMP kinase, thymidylat 90.1 0.39 1.3E-05 46.3 6.0 28 149-176 19-46 (223)
482 3cmw_A Protein RECA, recombina 90.1 0.39 1.3E-05 59.9 7.4 90 150-247 382-473 (1706)
483 2qmh_A HPR kinase/phosphorylas 90.1 0.15 5.1E-06 47.8 2.9 25 151-175 34-58 (205)
484 2ged_A SR-beta, signal recogni 90.1 0.28 9.6E-06 46.0 5.0 26 150-175 47-72 (193)
485 3zvl_A Bifunctional polynucleo 90.1 0.13 4.5E-06 55.2 2.9 27 149-175 256-282 (416)
486 3kjh_A CO dehydrogenase/acetyl 90.0 0.36 1.2E-05 47.5 5.9 40 154-196 3-42 (254)
487 2qe7_A ATP synthase subunit al 90.0 0.4 1.4E-05 51.6 6.4 93 149-246 160-265 (502)
488 1svm_A Large T antigen; AAA+ f 90.0 0.3 1E-05 51.3 5.4 27 149-175 167-193 (377)
489 2vp4_A Deoxynucleoside kinase; 89.8 0.12 4.1E-06 50.4 2.2 25 150-174 19-43 (230)
490 3eph_A TRNA isopentenyltransfe 89.7 0.2 6.9E-06 52.6 3.9 24 152-175 3-26 (409)
491 2pjz_A Hypothetical protein ST 89.7 0.14 4.9E-06 50.9 2.6 24 151-174 30-53 (263)
492 1fx0_A ATP synthase alpha chai 89.6 0.32 1.1E-05 52.4 5.4 91 151-246 163-266 (507)
493 2ce2_X GTPase HRAS; signaling 89.6 0.18 6.2E-06 45.6 3.1 23 153-175 5-27 (166)
494 2zej_A Dardarin, leucine-rich 89.6 0.16 5.3E-06 47.5 2.7 22 153-174 4-25 (184)
495 3nh6_A ATP-binding cassette SU 89.5 0.15 5.3E-06 51.8 2.7 27 149-175 78-104 (306)
496 3fvq_A Fe(3+) IONS import ATP- 89.5 0.18 6.1E-06 52.5 3.2 26 150-175 29-54 (359)
497 3cmw_A Protein RECA, recombina 89.5 0.47 1.6E-05 59.2 7.4 89 151-247 1431-1521(1706)
498 4gzl_A RAS-related C3 botulinu 89.4 0.22 7.4E-06 47.4 3.6 42 134-175 13-54 (204)
499 3f9v_A Minichromosome maintena 89.4 0.1 3.5E-06 58.8 1.4 46 130-175 295-351 (595)
500 2wjg_A FEOB, ferrous iron tran 89.2 0.21 7.2E-06 46.6 3.3 23 152-174 8-30 (188)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=8.8e-50 Score=453.83 Aligned_cols=318 Identities=14% Similarity=0.111 Sum_probs=253.7
Q ss_pred cccchhHHHHHHHHHhhcC---CceEEEEEecCCchHHHHHHHHHH--HhhhhcCCCCeEEEEEcCCcc--CHHHHHHHH
Q 003753 131 NIVGIESRLSEVWRYIEDD---GVKIIGLYGVRGVGKSTLLKQLND--TFSDMSHKFGAVIMVKASTEL--NIEKIQDVI 203 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i 203 (798)
..|||+.++++|.++|..+ ..++|+|+||||+||||||+++|+ +. .++.+|+.++||++++.+ +...++..|
T Consensus 129 ~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 129 TCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred ccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 4369999999999999653 689999999999999999999998 33 457899999999999985 899999999
Q ss_pred HHHcCCCCC---CCccccCCHHHHHHHHHHHhcCC-cEEEEEecccCcccccccCCCCCCCcEEEEeCCchHHhhhcC-C
Q 003753 204 RSRLGIDPD---GDKWKNRDDQGRAAEIFRRLSNK-KFALLLDDLRERIELSEAGVPVQNASKIVFTTIFEEVCSSMS-V 278 (798)
Q Consensus 204 ~~~l~~~~~---~~~~~~~~~~~~~~~l~~~l~~~-r~LlVlDdv~~~~~~~~~~~p~~~gs~iivTTR~~~v~~~~~-~ 278 (798)
+.+++.... .......+...+...+++.|+++ ||||||||||+..++ .++..+||+||||||+..++..++ .
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~---~~~~~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI---RWAQELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH---HHHHHTTCEEEEEESBGGGGGGCCSC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh---cccccCCCEEEEEcCCHHHHHHcCCC
Confidence 999986531 11122345677889999999996 999999999997754 223347999999999999998876 4
Q ss_pred CcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHHHhcCCCChhHHHHHHHHHhcCCCC
Q 003753 279 DWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRYPSG 358 (798)
Q Consensus 279 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~ 358 (798)
..+|+|++|++++||+||.++++... .++++.+++++|+++|+|+||||+++|+.|+.+ + |+.+ +.+....+.
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l~~ 357 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKLES 357 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHHHH
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHhhc
Confidence 46799999999999999999988653 246788999999999999999999999999764 2 4433 333322111
Q ss_pred CCCcccchhhhhhhhhcCCCchhHhHHHH-----------hhcCCCCCceecHHHHHHHHHhc--CCCcCCccHHHHHHh
Q 003753 359 FESIGTHVFPLLKFSYDRLTSETHKTCFL-----------YGSLFPRNQIIMKDELIELWIGE--GLLRDSHNIAVARRE 425 (798)
Q Consensus 359 ~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-----------~~s~fp~~~~i~~~~li~~W~a~--g~i~~~~~~~~~~~~ 425 (798)
.. .+.+..++.+||++||++ +|.||+ |||+||+++.|+ ++.|+|+ ||+...+.....++.
T Consensus 358 ~~--~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~ 430 (549)
T 2a5y_B 358 RG--LVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEV 430 (549)
T ss_dssp HC--SSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHH
T ss_pred cc--HHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHH
Confidence 11 236889999999999997 999999 999999999999 8999999 999765323334566
Q ss_pred HHHHHHHHHHcccccccccCCCcCcEEEccchHHHHHHHHhhc
Q 003753 426 GKFILESLKLACLLEEVEVNNSEDFVKMHNMLRDMALWIASSQ 468 (798)
Q Consensus 426 ~~~~l~~L~~~sll~~~~~~~~~~~~~mHdlv~d~a~~~~~~~ 468 (798)
++ |+++|+++||++....+ ...+|+|||+||+||++++.++
T Consensus 431 ~~-~l~~L~~rsLl~~~~~~-~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 431 AD-RLKRLSKRGALLSGKRM-PVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp HH-HHHHTTTBSSCSEEECS-SSCEEECCHHHHHHHHTTSCTH
T ss_pred HH-HHHHHHHcCCeeEecCC-CceEEEeChHHHHHHHHHHHHH
Confidence 66 99999999999987542 3568999999999999888663
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=3.3e-40 Score=377.14 Aligned_cols=288 Identities=16% Similarity=0.174 Sum_probs=230.5
Q ss_pred cccchhHHHHHHHHHhhc-CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCe-EEEEEcCCccCHHHHHHHHHHHcC
Q 003753 131 NIVGIESRLSEVWRYIED-DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGA-VIMVKASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~vs~~~~~~~~~~~i~~~l~ 208 (798)
..|||+.++++|.++|.+ ++.++|+|+||||+||||||+++|++. .++.+|+. ++|+++++.++...++..|++.++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 459999999999999976 568999999999999999999999876 44678886 999999999998888888887543
Q ss_pred CCC---CCC-c---cccCCHHHHHHHHHHHh---cCCcEEEEEecccCcccccccCCCCCCCcEEEEeCCchHHhhhcCC
Q 003753 209 IDP---DGD-K---WKNRDDQGRAAEIFRRL---SNKKFALLLDDLRERIELSEAGVPVQNASKIVFTTIFEEVCSSMSV 278 (798)
Q Consensus 209 ~~~---~~~-~---~~~~~~~~~~~~l~~~l---~~~r~LlVlDdv~~~~~~~~~~~p~~~gs~iivTTR~~~v~~~~~~ 278 (798)
... ... . ....+.+.....+++.| .++|+||||||||+...|..+ .+||+||||||++.++..+..
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f----~pGSRILVTTRd~~Va~~l~g 283 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----NLSCKILLTTRFKQVTDFLSA 283 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH----HSSCCEEEECSCSHHHHHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh----CCCeEEEEeccChHHHHhcCC
Confidence 211 000 0 01123345566677765 689999999999998877765 279999999999999865444
Q ss_pred Ccceecc------CCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHHHhcCCC-ChhHHHHHHHH
Q 003753 279 DWRFKVD------YLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGSAMASRR-DPDNWRYAIEE 351 (798)
Q Consensus 279 ~~~~~l~------~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~-~~~~w~~~~~~ 351 (798)
...|.++ +|+++|||+||.+..+.. . .++..+| |+|+||||+++|+.|+.+. +..+|+..
T Consensus 284 ~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~--- 350 (1221)
T 1vt4_I 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV--- 350 (1221)
T ss_dssp HSSCEEEECSSSSCCCHHHHHHHHHHHHCCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC---
T ss_pred CeEEEecCccccCCcCHHHHHHHHHHHcCCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC---
Confidence 4467777 999999999999985432 1 1233333 9999999999999999863 67788752
Q ss_pred HhcCCCCCCCcccchhhhhhhhhcCCCchhH-hHHHHhhcCCCCCceecHHHHHHHHHhcCCCcCCccHHHHHHhHHHHH
Q 003753 352 LQRYPSGFESIGTHVFPLLKFSYDRLTSETH-KTCFLYGSLFPRNQIIMKDELIELWIGEGLLRDSHNIAVARREGKFIL 430 (798)
Q Consensus 352 l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~l 430 (798)
..+.+..+|.+||+.||++ . |.||++||+||+++.|+++.++.+|+++| ++.+..++
T Consensus 351 ----------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L 408 (1221)
T 1vt4_I 351 ----------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVV 408 (1221)
T ss_dssp ----------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHH
T ss_pred ----------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHH
Confidence 1247999999999999997 8 99999999999999999999999999887 12477899
Q ss_pred HHHHHcccccccccCCCcCcEEEccchHHHH
Q 003753 431 ESLKLACLLEEVEVNNSEDFVKMHNMLRDMA 461 (798)
Q Consensus 431 ~~L~~~sll~~~~~~~~~~~~~mHdlv~d~a 461 (798)
++|+++||++.... ..+|+|||++++++
T Consensus 409 ~eLvdRSLLq~d~~---~~rYrMHDLllELr 436 (1221)
T 1vt4_I 409 NKLHKYSLVEKQPK---ESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHTSSSSSBCSS---SSEEBCCCHHHHHH
T ss_pred HHHHhhCCEEEeCC---CCEEEehHHHHHHh
Confidence 99999999998532 67899999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.5e-38 Score=397.42 Aligned_cols=315 Identities=19% Similarity=0.179 Sum_probs=257.5
Q ss_pred CcccchhHHHHHHHHHhh--cCCceEEEEEecCCchHHHHHHHHHHHhhhhcC-CCCeEEEEEcCCccC--HHHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIE--DDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSH-KFGAVIMVKASTELN--IEKIQDVIR 204 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~vs~~~~--~~~~~~~i~ 204 (798)
+.||||++++++|.++|. +++.++|+|+||||+||||||+++|++...... +|+.++|+++++..+ ....+..++
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 203 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLC 203 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHH
Confidence 369999999999999994 367899999999999999999999998633344 557889999998543 455577788
Q ss_pred HHcCCCCCCCccccCCHHHHHHHHHHHhcCC--cEEEEEecccCcccccccCCCCCCCcEEEEeCCchHHhhh-cCCCcc
Q 003753 205 SRLGIDPDGDKWKNRDDQGRAAEIFRRLSNK--KFALLLDDLRERIELSEAGVPVQNASKIVFTTIFEEVCSS-MSVDWR 281 (798)
Q Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~--r~LlVlDdv~~~~~~~~~~~p~~~gs~iivTTR~~~v~~~-~~~~~~ 281 (798)
..+............+.+.+...++..+.++ ||||||||||+..+|..+ .+||+||||||++.++.. ++....
T Consensus 204 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~----~~~~~ilvTtR~~~~~~~~~~~~~~ 279 (1249)
T 3sfz_A 204 MRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF----DNQCQILLTTRDKSVTDSVMGPKHV 279 (1249)
T ss_dssp HHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT----CSSCEEEEEESSTTTTTTCCSCBCC
T ss_pred HHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh----cCCCEEEEEcCCHHHHHhhcCCceE
Confidence 8876554322234567788899999999887 999999999998877665 578999999999999854 456678
Q ss_pred eeccC-CChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHHHhcCCCChhHHHHHHHHHhcCCCCCC
Q 003753 282 FKVDY-LPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRYPSGFE 360 (798)
Q Consensus 282 ~~l~~-L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~~~ 360 (798)
+.+++ |+++||++||...++... +++.+++++|+++|+|+||||+++|++|+.+. ..|+.+++.+....+..-
T Consensus 280 ~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~ 353 (1249)
T 3sfz_A 280 VPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRI 353 (1249)
T ss_dssp EECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCS
T ss_pred EEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhc
Confidence 89996 999999999999886432 33456799999999999999999999998743 579999999877643321
Q ss_pred -----CcccchhhhhhhhhcCCCchhHhHHHHhhcCCCCCceecHHHHHHHHHhcCCCcCCccHHHHHHhHHHHHHHHHH
Q 003753 361 -----SIGTHVFPLLKFSYDRLTSETHKTCFLYGSLFPRNQIIMKDELIELWIGEGLLRDSHNIAVARREGKFILESLKL 435 (798)
Q Consensus 361 -----~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~l~~L~~ 435 (798)
...+.+..++.+||+.||++ .|.||+|||+||+++.|+++.++.+|.++ ++.++.++++|++
T Consensus 354 ~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~ 420 (1249)
T 3sfz_A 354 RKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVN 420 (1249)
T ss_dssp SCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHh
Confidence 11136899999999999997 99999999999999999999999999654 3567889999999
Q ss_pred cccccccccCCCcCcEEEccchHHHHHHHHhhc
Q 003753 436 ACLLEEVEVNNSEDFVKMHNMLRDMALWIASSQ 468 (798)
Q Consensus 436 ~sll~~~~~~~~~~~~~mHdlv~d~a~~~~~~~ 468 (798)
+||++.... +...+|+|||+||++|+..+.++
T Consensus 421 ~sl~~~~~~-~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 421 KSLLFCNRN-GKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp TTSCEEEES-SSSEEEECCHHHHHHHHHHTGGG
T ss_pred ccceEEecC-CCceEEEecHHHHHHHHhhhhHH
Confidence 999997653 23457999999999999987664
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.9e-35 Score=341.37 Aligned_cols=310 Identities=19% Similarity=0.207 Sum_probs=240.4
Q ss_pred CcccchhHHHHHHHHHhhc--CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCC-CeEEEEEcCCccCHHHHHHH---H
Q 003753 130 NNIVGIESRLSEVWRYIED--DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKF-GAVIMVKASTELNIEKIQDV---I 203 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~---i 203 (798)
+.||||+.++++|.++|.. ++.++|+|+||||+||||||++++++....+.+| +.++|++++.. +...+... +
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l 202 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNL 202 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHH
Confidence 3699999999999999963 5679999999999999999999998752214677 58999999875 33334443 3
Q ss_pred HHHcCCCCCCCccccCCHHHHHHHHHHHhcC--CcEEEEEecccCcccccccCCCCCCCcEEEEeCCchHHhhhcCCCcc
Q 003753 204 RSRLGIDPDGDKWKNRDDQGRAAEIFRRLSN--KKFALLLDDLRERIELSEAGVPVQNASKIVFTTIFEEVCSSMSVDWR 281 (798)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--~r~LlVlDdv~~~~~~~~~~~p~~~gs~iivTTR~~~v~~~~~~~~~ 281 (798)
+..++...........+.+.....+...+.+ +++||||||||+...+..+ ..|++||||||+..++..+. ...
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l----~~~~~ilvTsR~~~~~~~~~-~~~ 277 (591)
T 1z6t_A 203 CTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF----DSQCQILLTTRDKSVTDSVM-GPK 277 (591)
T ss_dssp HHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT----CSSCEEEEEESCGGGGTTCC-SCE
T ss_pred HHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh----cCCCeEEEECCCcHHHHhcC-CCc
Confidence 4455532111112345667788888888876 7999999999987666543 46899999999999877653 334
Q ss_pred eec---cCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHHHhcCCCChhHHHHHHHHHhcCCCC
Q 003753 282 FKV---DYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGSAMASRRDPDNWRYAIEELQRYPSG 358 (798)
Q Consensus 282 ~~l---~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~ 358 (798)
+++ ++|+.+||++||.+.++... +...+.+.+|+++|+|+||||..+|+.++.+ ...|..+++.+......
T Consensus 278 ~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~~ 351 (591)
T 1z6t_A 278 YVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFK 351 (591)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCCC
T ss_pred eEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHHH
Confidence 554 58999999999999987532 2223568999999999999999999999874 34799999888765422
Q ss_pred -C----CCcccchhhhhhhhhcCCCchhHhHHHHhhcCCCCCceecHHHHHHHHHhcCCCcCCccHHHHHHhHHHHHHHH
Q 003753 359 -F----ESIGTHVFPLLKFSYDRLTSETHKTCFLYGSLFPRNQIIMKDELIELWIGEGLLRDSHNIAVARREGKFILESL 433 (798)
Q Consensus 359 -~----~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~l~~L 433 (798)
. ......+..++.+||+.||++ .|.||++||+||+++.|+.+.+...|.++ .+.+..++++|
T Consensus 352 ~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L 418 (591)
T 1z6t_A 352 RIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEF 418 (591)
T ss_dssp CSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHH
T ss_pred HhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHH
Confidence 1 111237889999999999997 99999999999999999999999999543 23467889999
Q ss_pred HHcccccccccCCCcCcEEEccchHHHHHHHH
Q 003753 434 KLACLLEEVEVNNSEDFVKMHNMLRDMALWIA 465 (798)
Q Consensus 434 ~~~sll~~~~~~~~~~~~~mHdlv~d~a~~~~ 465 (798)
+++||++.... +...+|+||+++|++++...
T Consensus 419 ~~~~Ll~~~~~-~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 419 VNKSLLFCDRN-GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHTTSSEEEEE-TTEEEEECCHHHHHHHHHHT
T ss_pred HhCcCeEEecC-CCccEEEEcHHHHHHHHhhh
Confidence 99999986542 22458999999999999874
No 5
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=3.5e-23 Score=226.01 Aligned_cols=269 Identities=17% Similarity=0.163 Sum_probs=174.1
Q ss_pred chhceeeEEeecCCCCCCCCCC-CCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccc-ccccCCCCCC
Q 003753 490 SWKEAVRVSLWRSPSIDSLSPT-PPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLH-VGEGELIDLQ 567 (798)
Q Consensus 490 ~~~~l~~lsl~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~ 567 (798)
..++++.+++.++ .+..+|.. +..+++|++|++++|.+..+++..|..+++|++|++++| .++.+| ..++++++|+
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCC
Confidence 4568899999998 88888854 367899999999999999988877999999999999999 888874 5688999999
Q ss_pred EEEcCCCCCcccCcc-ccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhcc
Q 003753 568 YLNLSNTNICELPIG-IKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELES 646 (798)
Q Consensus 568 ~L~Ls~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 646 (798)
+|++++|.+..+|.. +.++++|++|++++|. +..+++..+..+++|++|++++|.+.. . .+..
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~------------~---~~~~ 184 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH------------V---DLSL 184 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB------------C---CGGG
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc------------c---cccc
Confidence 999999999999876 4889999999999997 777776668899999999999987752 1 2444
Q ss_pred CCCCCeeEEEEecccchhhhhhhhhhcccceeeee------ccCchhhhccCceEEeeccCCCCCCcccCCCCccEEEee
Q 003753 647 LKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM------GLPEAIFSQDLQDLSIINCSIKDLTCIVYIPRLRFLFAK 720 (798)
Q Consensus 647 l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~lp~~~lp~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~ 720 (798)
+++|+.|+++.+....+. ...+|+.|.+ .+|...+ ++|+.|++++|.++.++++..+++|++|+++
T Consensus 185 l~~L~~L~l~~n~l~~~~-------~~~~L~~L~l~~n~l~~~~~~~~-~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls 256 (390)
T 3o6n_A 185 IPSLFHANVSYNLLSTLA-------IPIAVEELDASHNSINVVRGPVN-VELTILKLQHNNLTDTAWLLNYPGLVEVDLS 256 (390)
T ss_dssp CTTCSEEECCSSCCSEEE-------CCSSCSEEECCSSCCCEEECCCC-SSCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred ccccceeecccccccccC-------CCCcceEEECCCCeeeecccccc-ccccEEECCCCCCcccHHHcCCCCccEEECC
Confidence 566666666544332221 1123444444 1121222 4555555555555554555555555555555
Q ss_pred cCCchhhhhccccc--------------cCCCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccCCCCCCC
Q 003753 721 DCPSLEEIIASDLR--------------FEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCPSLRKL 786 (798)
Q Consensus 721 ~~~~l~~l~~~~~~--------------~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l 786 (798)
+|. +..+....+. ....+.....+|+|+.|+|+++ .+..++.....+++|+.|++++| +++.+
T Consensus 257 ~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N-~i~~~ 333 (390)
T 3o6n_A 257 YNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTL 333 (390)
T ss_dssp SSC-CCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCC
T ss_pred CCc-CCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC-cccee
Confidence 532 2222110000 0000112344566666666653 44455544445566666666554 24444
Q ss_pred C
Q 003753 787 P 787 (798)
Q Consensus 787 p 787 (798)
|
T Consensus 334 ~ 334 (390)
T 3o6n_A 334 K 334 (390)
T ss_dssp C
T ss_pred C
Confidence 4
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=4.4e-22 Score=213.75 Aligned_cols=259 Identities=16% Similarity=0.199 Sum_probs=139.2
Q ss_pred hhhchhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCC
Q 003753 487 ETASWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDL 566 (798)
Q Consensus 487 ~~~~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L 566 (798)
....+++++.+++.+| .+..++. +..+++|++|++++|.+..++. |.++++|++|++++| .+..+|. +..+++|
T Consensus 61 ~~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L 134 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNED-NISDISP-LANLTKM 134 (347)
T ss_dssp TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTS-CCCCCGG-GTTCTTC
T ss_pred hhhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCC-cccCchh-hccCCce
Confidence 3344455555555555 5555552 5555556666665555555542 555555666666555 5555544 5555555
Q ss_pred CEEEcCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhcc
Q 003753 567 QYLNLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELES 646 (798)
Q Consensus 567 ~~L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 646 (798)
++|++++|.....+..+..+++|++|++++|. +..++. +..+++|++|++++|.+.. +..+..
T Consensus 135 ~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~~--------------~~~~~~ 197 (347)
T 4fmz_A 135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIED--------------ISPLAS 197 (347)
T ss_dssp CEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCCC--------------CGGGGG
T ss_pred eEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCcccc--------------cccccC
Confidence 55555555332222335555555666655554 444443 4555666666665554431 112455
Q ss_pred CCCCCeeEEEEecccchhhhhhhhhhcccceeeee------ccCc-hhhhccCceEEeeccCCCCCCcccCCCCccEEEe
Q 003753 647 LKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM------GLPE-AIFSQDLQDLSIINCSIKDLTCIVYIPRLRFLFA 719 (798)
Q Consensus 647 l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~lp~-~~lp~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L 719 (798)
+++|+.|+++.+....... ...+++|+.|.+ .+|. ..+ ++|++|++++|.++.++.+..+++|++|++
T Consensus 198 l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 272 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSPLANL-SQLTWLEIGTNQISDINAVKDLTKLKMLNV 272 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGGGTTC-TTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred CCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcchhcC-CCCCEEECCCCccCCChhHhcCCCcCEEEc
Confidence 5555555555443333222 222335555555 1221 334 566677776666666666666667777777
Q ss_pred ecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccCCCCCCC
Q 003753 720 KDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCPSLRKL 786 (798)
Q Consensus 720 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l 786 (798)
++|. +..+ ..+..+++|+.|++++|+-....+.....+++|+.|++++|+ ++.+
T Consensus 273 ~~n~-l~~~-----------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 273 GSNQ-ISDI-----------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDI 326 (347)
T ss_dssp CSSC-CCCC-----------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCC
T ss_pred cCCc-cCCC-----------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccc
Confidence 6652 3322 245567777777777754333333334556777777777764 4443
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=6.1e-22 Score=222.38 Aligned_cols=282 Identities=21% Similarity=0.248 Sum_probs=200.3
Q ss_pred EecCCcccchhhhhchhceeeEEeecCCCCCCCC-CCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccc
Q 003753 476 FQETDKSIKEQETASWKEAVRVSLWRSPSIDSLS-PTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLS 554 (798)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~l~~lsl~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~ 554 (798)
.+.+.....+|.. ..+.++.|++.+| .+..++ ..+..+++|++|++++|.+..+++..|.++++|++|+|++| .++
T Consensus 17 ~c~~~~l~~ip~~-~~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~ 93 (477)
T 2id5_A 17 LCHRKRFVAVPEG-IPTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLK 93 (477)
T ss_dssp ECCSCCCSSCCSC-CCTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCC
T ss_pred EeCCCCcCcCCCC-CCCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCC
Confidence 3344455555542 3458999999999 888875 45789999999999999999987777999999999999999 899
Q ss_pred cccc-cccCCCCCCEEEcCCCCCccc-CccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCC
Q 003753 555 KLHV-GEGELIDLQYLNLSNTNICEL-PIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSS 632 (798)
Q Consensus 555 ~lp~-~i~~L~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 632 (798)
.+|. .+.++++|++|+|++|.+..+ |..+.++++|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~------- 165 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLT------- 165 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCS-------
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCc-------
Confidence 9876 468999999999999999877 5678999999999999997 77776656899999999999998775
Q ss_pred CCCcccccHHHhccCCCCCeeEEEEecccchhhhhhhhhhcccceeeee-------ccCchhh-hccCceEEeeccCCCC
Q 003753 633 VPGVTVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM-------GLPEAIF-SQDLQDLSIINCSIKD 704 (798)
Q Consensus 633 ~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l-------~lp~~~l-p~~L~~L~L~~~~l~~ 704 (798)
......+.++++|+.|++..+....+.. .....+++|+.|.+ .+|...+ ..+|++|+|++|.++.
T Consensus 166 -----~~~~~~l~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 166 -----SIPTEALSHLHGLIVLRLRHLNINAIRD--YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp -----SCCHHHHTTCTTCCEEEEESCCCCEECT--TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred -----ccChhHhcccCCCcEEeCCCCcCcEeCh--hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence 3345567888889999888765544332 12233456777776 1222111 1478888888887777
Q ss_pred CC--cccCCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhc-ccCCCCCCCcceeeeccCC
Q 003753 705 LT--CIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNI-CHKAMAFPSLERIYVHGCP 781 (798)
Q Consensus 705 l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i-~~~~~~~~~L~~L~l~~c~ 781 (798)
+| .+..+++|+.|+|++|. +..+.. ..+..+++|+.|+|+++ .+..+ +.....+++|+.|++++|
T Consensus 239 ~~~~~~~~l~~L~~L~Ls~n~-l~~~~~---------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N- 306 (477)
T 2id5_A 239 VPYLAVRHLVYLRFLNLSYNP-ISTIEG---------SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN- 306 (477)
T ss_dssp CCHHHHTTCTTCCEEECCSSC-CCEECT---------TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-
T ss_pred cCHHHhcCccccCeeECCCCc-CCccCh---------hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-
Confidence 66 36777888888887754 343321 23455666666666663 33333 333445566666666554
Q ss_pred CCCCCC
Q 003753 782 SLRKLP 787 (798)
Q Consensus 782 ~L~~lp 787 (798)
+++.+|
T Consensus 307 ~l~~~~ 312 (477)
T 2id5_A 307 QLTTLE 312 (477)
T ss_dssp CCSCCC
T ss_pred cCceeC
Confidence 344443
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=1.2e-22 Score=215.45 Aligned_cols=218 Identities=19% Similarity=0.248 Sum_probs=131.7
Q ss_pred cceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCccccCCCcccEEeCCC
Q 003753 517 RLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKSCTHLRTLLLDG 596 (798)
Q Consensus 517 ~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~l~~ 596 (798)
+++.|++++|.+..+|.. +.++++|++|+|++| .++.+|..++++++|++|++++|.+..+|..++++++|++|++++
T Consensus 82 ~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ceeEEEccCCCchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 444555555555555544 444555555555555 555555555555555555555555555555555555555555555
Q ss_pred CCCcccccchhhc---------CCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecccchhhhh
Q 003753 597 TENLKAIPVGMLS---------SLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDSLNKLK 667 (798)
Q Consensus 597 ~~~l~~lp~~~i~---------~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~ 667 (798)
|..+..+|.. +. .+++|++|++++|.+. .....+.++++|+.|+++.+....+...
T Consensus 160 n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~-------------~lp~~l~~l~~L~~L~L~~N~l~~l~~~- 224 (328)
T 4fcg_A 160 CPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR-------------SLPASIANLQNLKSLKIRNSPLSALGPA- 224 (328)
T ss_dssp ETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC-------------CCCGGGGGCTTCCEEEEESSCCCCCCGG-
T ss_pred CCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC-------------cchHhhcCCCCCCEEEccCCCCCcCchh-
Confidence 5445555543 32 2555555555555442 1123345555555555554443322211
Q ss_pred hhhhhcccceeeeeccCchhhhccCceEEeeccCCC-CCC-cccCCCCccEEEeecCCchhhhhccccccCCCCcccccc
Q 003753 668 SSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIK-DLT-CIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMF 745 (798)
Q Consensus 668 ~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~-~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~ 745 (798)
. ..+ ++|++|+|++|.+. .+| .++.+++|++|+|++|+.++.++ ..+..+
T Consensus 225 --l---------------~~l-~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p----------~~~~~l 276 (328)
T 4fcg_A 225 --I---------------HHL-PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP----------LDIHRL 276 (328)
T ss_dssp --G---------------GGC-TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC----------TTGGGC
T ss_pred --h---------------ccC-CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc----------hhhhcC
Confidence 1 123 77888888887433 333 57888889999998887766553 357788
Q ss_pred cccceeecCCccchhhcccCCCCCCCcceeeecc
Q 003753 746 LHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHG 779 (798)
Q Consensus 746 ~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~ 779 (798)
++|+.|+|++|+.++.+|.....+++|+.+.+..
T Consensus 277 ~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 8899999998888888888888888888887764
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.7e-22 Score=232.98 Aligned_cols=269 Identities=17% Similarity=0.163 Sum_probs=168.4
Q ss_pred chhceeeEEeecCCCCCCCCCCC-CCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccc-cccCCCCCC
Q 003753 490 SWKEAVRVSLWRSPSIDSLSPTP-PCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHV-GEGELIDLQ 567 (798)
Q Consensus 490 ~~~~l~~lsl~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~ 567 (798)
...+++.+++.++ .+..+|..+ ..+++|++|++++|.+..+++..|+.+++|++|+|++| .++.+|. .++++++|+
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCC
Confidence 3457888888888 888888543 67889999999999888888767889999999999999 8887754 568899999
Q ss_pred EEEcCCCCCcccCcc-ccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhcc
Q 003753 568 YLNLSNTNICELPIG-IKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELES 646 (798)
Q Consensus 568 ~L~Ls~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 646 (798)
+|+|++|.+..+|.. ++++++|++|++++|. +..+++..++.+++|++|++++|.+.. . .+..
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~------------~---~~~~ 190 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH------------V---DLSL 190 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSB------------C---CGGG
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCC------------c---Chhh
Confidence 999999999888766 4889999999999987 777776668889999999999887652 1 1344
Q ss_pred CCCCCeeEEEEecccchhhhhhhhhhcccceeeee------ccCchhhhccCceEEeeccCCCCCCcccCCCCccEEEee
Q 003753 647 LKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM------GLPEAIFSQDLQDLSIINCSIKDLTCIVYIPRLRFLFAK 720 (798)
Q Consensus 647 l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~lp~~~lp~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~ 720 (798)
+++|+.|+++.+....+. ...+|+.|.+ .+|...+ ++|+.|+|++|.++.+++++.+++|+.|+|+
T Consensus 191 l~~L~~L~l~~n~l~~l~-------~~~~L~~L~ls~n~l~~~~~~~~-~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls 262 (597)
T 3oja_B 191 IPSLFHANVSYNLLSTLA-------IPIAVEELDASHNSINVVRGPVN-VELTILKLQHNNLTDTAWLLNYPGLVEVDLS 262 (597)
T ss_dssp CTTCSEEECCSSCCSEEE-------CCTTCSEEECCSSCCCEEECSCC-SCCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred hhhhhhhhcccCcccccc-------CCchhheeeccCCcccccccccC-CCCCEEECCCCCCCCChhhccCCCCCEEECC
Confidence 556666665544332211 1123444443 1111112 4455555555544444445555555555555
Q ss_pred cCCchhhhhccccc--------------cCCCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccCCCCCCC
Q 003753 721 DCPSLEEIIASDLR--------------FEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCPSLRKL 786 (798)
Q Consensus 721 ~~~~l~~l~~~~~~--------------~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l 786 (798)
+|. +..++...+. ....+.....+|+|+.|+|++| .+..++.....+++|+.|++++| ++..+
T Consensus 263 ~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N-~l~~~ 339 (597)
T 3oja_B 263 YNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTL 339 (597)
T ss_dssp SSC-CCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCC
T ss_pred CCc-cCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC-CCCCc
Confidence 432 2221110000 0000123344566666666663 44455554455666666666654 24444
Q ss_pred C
Q 003753 787 P 787 (798)
Q Consensus 787 p 787 (798)
|
T Consensus 340 ~ 340 (597)
T 3oja_B 340 K 340 (597)
T ss_dssp C
T ss_pred C
Confidence 3
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=1.6e-21 Score=209.25 Aligned_cols=262 Identities=16% Similarity=0.211 Sum_probs=211.0
Q ss_pred CcccchhhhhchhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccccc
Q 003753 480 DKSIKEQETASWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVG 559 (798)
Q Consensus 480 ~~~~~~~~~~~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~ 559 (798)
......+.....++++.|.+.+| .+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|..+..+ ..
T Consensus 76 n~i~~~~~~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~ 150 (347)
T 4fmz_A 76 NQITDISPLSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SP 150 (347)
T ss_dssp SCCCCCGGGTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GG
T ss_pred CccccchhhhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cc
Confidence 34444455666789999999999 898887 68999999999999999998887 889999999999999444444 45
Q ss_pred ccCCCCCCEEEcCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccc
Q 003753 560 EGELIDLQYLNLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVL 639 (798)
Q Consensus 560 i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 639 (798)
+..+++|++|++++|.+..++. +..+++|++|++++|. +..++. +..+++|++|++++|.+..
T Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~------------- 213 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP--LASLTSLHYFTAYVNQITD------------- 213 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG--GGGCTTCCEEECCSSCCCC-------------
T ss_pred hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc--ccCCCccceeecccCCCCC-------------
Confidence 8999999999999999988875 8899999999999997 888876 7899999999999987651
Q ss_pred cHHHhccCCCCCeeEEEEecccchhhhhhhhhhcccceeeee------ccCc-hhhhccCceEEeeccCCCCCCcccCCC
Q 003753 640 LLEELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM------GLPE-AIFSQDLQDLSIINCSIKDLTCIVYIP 712 (798)
Q Consensus 640 ~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~lp~-~~lp~~L~~L~L~~~~l~~l~~l~~l~ 712 (798)
...+..+++|+.|+++.+....+.. ...+++|+.|.+ .++. ..+ ++|+.|++++|.++.++.+..++
T Consensus 214 -~~~~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~l~ 287 (347)
T 4fmz_A 214 -ITPVANMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTNQISDINAVKDL-TKLKMLNVGSNQISDISVLNNLS 287 (347)
T ss_dssp -CGGGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCCGGGTTC-TTCCEEECCSSCCCCCGGGGGCT
T ss_pred -CchhhcCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCCccCCChhHhcC-CCcCEEEccCCccCCChhhcCCC
Confidence 1227788899999988776655444 334557888887 2232 455 89999999999999888899999
Q ss_pred CccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccCC
Q 003753 713 RLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCP 781 (798)
Q Consensus 713 ~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~ 781 (798)
+|+.|++++|......+ ..+..+++|+.|++++|+ +..++. ...+++|++|++++|+
T Consensus 288 ~L~~L~L~~n~l~~~~~----------~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 288 QLNSLFLNNNQLGNEDM----------EVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp TCSEEECCSSCCCGGGH----------HHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred CCCEEECcCCcCCCcCh----------hHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 99999999976433321 356789999999999975 666554 6678999999999985
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=1.7e-22 Score=213.18 Aligned_cols=251 Identities=14% Similarity=0.100 Sum_probs=203.0
Q ss_pred hceeeEEeecCCCCC---CCCCCCCCCCcceeeeecc-cccc-cccHHHHhcCCceeEEeCCCCcccc-cccccccCCCC
Q 003753 492 KEAVRVSLWRSPSID---SLSPTPPCSPRLLTLLVRY-TMIK-EFENKFFKSMYALRVLDSSQNAKLS-KLHVGEGELID 565 (798)
Q Consensus 492 ~~l~~lsl~~~~~~~---~l~~~~~~~~~L~~L~l~~-~~~~-~l~~~~~~~l~~Lr~L~L~~~~~i~-~lp~~i~~L~~ 565 (798)
.+++.|++.++ .+. .+|..+..+++|++|++++ |.+. .+|.. |+++++|++|++++| .++ .+|..++++++
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGGGCTT
T ss_pred ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC-eeCCcCCHHHhCCCC
Confidence 37899999999 776 5787889999999999995 7776 55555 899999999999999 887 78999999999
Q ss_pred CCEEEcCCCCCc-ccCccccCCCcccEEeCCCCCCcc-cccchhhcCCC-CCccccccCCCCCCccCCCCCCCcccccHH
Q 003753 566 LQYLNLSNTNIC-ELPIGIKSCTHLRTLLLDGTENLK-AIPVGMLSSLL-SLRVFSWVPTRYAGFNYGSSVPGVTVLLLE 642 (798)
Q Consensus 566 L~~L~Ls~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~-~lp~~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 642 (798)
|++|++++|.+. .+|..+..+++|++|++++|. +. .+|.. +..++ +|++|++++|.+. +....
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~-l~~l~~~L~~L~L~~N~l~------------~~~~~ 192 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDS-YGSFSKLFTSMTISRNRLT------------GKIPP 192 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGG-GGCCCTTCCEEECCSSEEE------------EECCG
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHH-HhhhhhcCcEEECcCCeee------------ccCCh
Confidence 999999999998 679999999999999999998 55 78877 88888 9999999998764 34556
Q ss_pred HhccCCCCCeeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCC-CCcccCCCCccEEEeec
Q 003753 643 ELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKD-LTCIVYIPRLRFLFAKD 721 (798)
Q Consensus 643 ~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~-l~~l~~l~~L~~L~L~~ 721 (798)
.+..++ |+.|+++.+...... +... ..+ ++|+.|+|++|.++. ++.+..+++|++|+|++
T Consensus 193 ~~~~l~-L~~L~Ls~N~l~~~~--~~~~---------------~~l-~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 193 TFANLN-LAFVDLSRNMLEGDA--SVLF---------------GSD-KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN 253 (313)
T ss_dssp GGGGCC-CSEEECCSSEEEECC--GGGC---------------CTT-SCCSEEECCSSEECCBGGGCCCCTTCCEEECCS
T ss_pred HHhCCc-ccEEECcCCcccCcC--CHHH---------------hcC-CCCCEEECCCCceeeecCcccccCCCCEEECcC
Confidence 677776 999999766544321 1111 223 899999999997764 45688899999999999
Q ss_pred CCchhhhhccccccCCCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccCCCCCCCCCC
Q 003753 722 CPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCPSLRKLPLS 789 (798)
Q Consensus 722 ~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~lp~~ 789 (798)
|.....+ +..+..+++|+.|+|++++--..+|.. ..+++|+.|++.+++.+...|..
T Consensus 254 N~l~~~~----------p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~ 310 (313)
T 1ogq_A 254 NRIYGTL----------PQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp SCCEECC----------CGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSS
T ss_pred CcccCcC----------ChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCCC
Confidence 7643333 346788999999999996544466654 78999999999999988776654
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=5.6e-22 Score=210.40 Aligned_cols=223 Identities=23% Similarity=0.266 Sum_probs=183.9
Q ss_pred cCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccc
Q 003753 538 SMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVF 617 (798)
Q Consensus 538 ~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L 617 (798)
...++++|+|++| .++.+|..++++++|++|+|++|.+..+|..++++++|++|++++|. +..+|.. ++++++|++|
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~-l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPAS-IASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGG-GGGCTTCCEE
T ss_pred cccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHH-HhcCcCCCEE
Confidence 4588999999999 99999999999999999999999999999999999999999999997 8899987 9999999999
Q ss_pred cccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEe
Q 003753 618 SWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSI 697 (798)
Q Consensus 618 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L 697 (798)
++++|...+. .+..+. .......+.++++|+.|+++.+....+.. .. ..+ ++|++|+|
T Consensus 156 ~L~~n~~~~~-~p~~~~--~~~~~~~~~~l~~L~~L~L~~n~l~~lp~---~l---------------~~l-~~L~~L~L 213 (328)
T 4fcg_A 156 SIRACPELTE-LPEPLA--STDASGEHQGLVNLQSLRLEWTGIRSLPA---SI---------------ANL-QNLKSLKI 213 (328)
T ss_dssp EEEEETTCCC-CCSCSE--EEC-CCCEEESTTCCEEEEEEECCCCCCG---GG---------------GGC-TTCCEEEE
T ss_pred ECCCCCCccc-cChhHh--hccchhhhccCCCCCEEECcCCCcCcchH---hh---------------cCC-CCCCEEEc
Confidence 9999765420 000000 00111235669999999999886654332 22 223 89999999
Q ss_pred eccCCCCCC-cccCCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcccCCCCCCCcceee
Q 003753 698 INCSIKDLT-CIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIY 776 (798)
Q Consensus 698 ~~~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~ 776 (798)
++|.++.+| .++.+++|++|+|++|+....++ ..+..+++|+.|+|++|+.++.++.....+++|+.|+
T Consensus 214 ~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p----------~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 283 (328)
T 4fcg_A 214 RNSPLSALGPAIHHLPKLEELDLRGCTALRNYP----------PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283 (328)
T ss_dssp ESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCC----------CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred cCCCCCcCchhhccCCCCCEEECcCCcchhhhH----------HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence 999888765 58899999999999988766553 4678899999999999999999998889999999999
Q ss_pred eccCCCCCCCCCCCCCCCC
Q 003753 777 VHGCPSLRKLPLSLESGKR 795 (798)
Q Consensus 777 l~~c~~L~~lp~~~~~~~~ 795 (798)
+++|+.+..+|......+.
T Consensus 284 L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 284 LRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp CTTCTTCCCCCGGGGGSCT
T ss_pred CCCCCchhhccHHHhhccC
Confidence 9999999999987766553
No 13
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=2e-21 Score=206.88 Aligned_cols=254 Identities=19% Similarity=0.230 Sum_probs=175.4
Q ss_pred ceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccc-cccccCCCCCCEEEc
Q 003753 493 EAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKL-HVGEGELIDLQYLNL 571 (798)
Q Consensus 493 ~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~L 571 (798)
+++.+.+.++ .+..+|..+. ++|++|++++|.+..++...|.++++|++|++++| .++.+ |..++.+++|++|++
T Consensus 32 ~l~~l~~~~~-~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTS-CCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCC-CccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEEC
Confidence 5777888888 8888885443 68999999999999998877999999999999999 88877 788999999999999
Q ss_pred CCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCC
Q 003753 572 SNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQ 651 (798)
Q Consensus 572 s~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 651 (798)
++|.++.+|..+. ++|++|++++|. +..++...+.++++|++|++++|.+.. .+.....+.++++|+
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKS----------SGIENGAFQGMKKLS 174 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCG----------GGBCTTGGGGCTTCC
T ss_pred CCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCc----------cCcChhhccCCCCcC
Confidence 9999999987765 799999999997 888887778999999999999987642 123446678889999
Q ss_pred eeEEEEecccchhhhhhhhhhcccceeeee------ccCc---hhhhccCceEEeeccCCCCCC--cccCCCCccEEEee
Q 003753 652 EISVIILTIDSLNKLKSSLKLQSCIRRLVM------GLPE---AIFSQDLQDLSIINCSIKDLT--CIVYIPRLRFLFAK 720 (798)
Q Consensus 652 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~lp~---~~lp~~L~~L~L~~~~l~~l~--~l~~l~~L~~L~L~ 720 (798)
.|+++.+....+.... .++|+.|.+ .++. ..+ ++|+.|++++|.++.++ .+..+++|++|+|+
T Consensus 175 ~L~l~~n~l~~l~~~~-----~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 248 (330)
T 1xku_A 175 YIRIADTNITTIPQGL-----PPSLTELHLDGNKITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248 (330)
T ss_dssp EEECCSSCCCSCCSSC-----CTTCSEEECTTSCCCEECTGGGTTC-TTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred EEECCCCccccCCccc-----cccCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCceeChhhccCCCCCCEEECC
Confidence 9998766554332211 134555554 1111 233 45666666666555433 35556666666666
Q ss_pred cCCchhhhhccccccCCCCcccccccccceeecCCccchhhcccCCC-------CCCCcceeeeccCC
Q 003753 721 DCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAM-------AFPSLERIYVHGCP 781 (798)
Q Consensus 721 ~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~-------~~~~L~~L~l~~c~ 781 (798)
+|. +..++ ..+..+++|+.|+++++ .++.++.... ..++|+.|+++++|
T Consensus 249 ~N~-l~~lp----------~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 249 NNK-LVKVP----------GGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp SSC-CSSCC----------TTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CCc-CccCC----------hhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 542 33331 23455566666666652 3444433211 13555666666554
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=3.2e-21 Score=223.49 Aligned_cols=146 Identities=16% Similarity=0.094 Sum_probs=125.2
Q ss_pred EecCCcccchhhhhchhceeeEEeecCCCCCCCCC-CCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccc
Q 003753 476 FQETDKSIKEQETASWKEAVRVSLWRSPSIDSLSP-TPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLS 554 (798)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~l~~lsl~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~ 554 (798)
.+.+.+...+|.. ..++++.|++++| .+..++. .+.++++|++|++++|.+..+++..|.++++|++|+|++| .++
T Consensus 17 ~c~~~~l~~ip~~-~~~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~ 93 (606)
T 3vq2_A 17 QCMDQKLSKVPDD-IPSSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQ 93 (606)
T ss_dssp ECTTSCCSSCCTT-SCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCC
T ss_pred EccCCCcccCCCC-CCCCcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-ccc
Confidence 3445555666653 2368999999999 8888775 5689999999999999999998877999999999999999 888
Q ss_pred cc-cccccCCCCCCEEEcCCCCCcccC-ccccCCCcccEEeCCCCCCcc--cccchhhcCCCCCccccccCCCCCC
Q 003753 555 KL-HVGEGELIDLQYLNLSNTNICELP-IGIKSCTHLRTLLLDGTENLK--AIPVGMLSSLLSLRVFSWVPTRYAG 626 (798)
Q Consensus 555 ~l-p~~i~~L~~L~~L~Ls~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~--~lp~~~i~~L~~L~~L~l~~~~~~~ 626 (798)
.+ |..++++++|++|++++|.+..+| ..++++++|++|++++|. +. .+|.. ++++++|++|++++|.+..
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCCE
T ss_pred ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHh-HhhcCCCCEEEccCCccee
Confidence 87 888999999999999999998886 679999999999999997 65 46776 9999999999999987753
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=218.33 Aligned_cols=265 Identities=18% Similarity=0.164 Sum_probs=213.3
Q ss_pred hhchhceeeEEeecCCCCCCC-CCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccc-cccccCCCC
Q 003753 488 TASWKEAVRVSLWRSPSIDSL-SPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKL-HVGEGELID 565 (798)
Q Consensus 488 ~~~~~~l~~lsl~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~ 565 (798)
....++++.|.+.+| .+..+ |..+.++++|++|++++|.+..+|...|.++++|++|+|++| .+..+ |..+..+++
T Consensus 52 ~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 52 FASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYN 129 (477)
T ss_dssp TTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTT
T ss_pred ccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC-ccccCChhHcccccc
Confidence 345678999999999 88877 556789999999999999999999988999999999999999 88876 678999999
Q ss_pred CCEEEcCCCCCccc-CccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHh
Q 003753 566 LQYLNLSNTNICEL-PIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL 644 (798)
Q Consensus 566 L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 644 (798)
|++|++++|.+..+ |..+.++++|++|++++|. +..+|...+..+++|+.|++++|.+. ......+
T Consensus 130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~------------~~~~~~~ 196 (477)
T 2id5_A 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNIN------------AIRDYSF 196 (477)
T ss_dssp CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCC------------EECTTCS
T ss_pred CCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCc------------EeChhhc
Confidence 99999999999877 5689999999999999997 88898877999999999999998875 3334567
Q ss_pred ccCCCCCeeEEEEecccchhhhhhhhhhcccceeeee------ccCc---hhhhccCceEEeeccCCCCCC--cccCCCC
Q 003753 645 ESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM------GLPE---AIFSQDLQDLSIINCSIKDLT--CIVYIPR 713 (798)
Q Consensus 645 ~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~lp~---~~lp~~L~~L~L~~~~l~~l~--~l~~l~~ 713 (798)
..+++|+.|+++.+.. ...++.......+|+.|++ .+|. ..+ ++|+.|+|++|.++.++ .+..+++
T Consensus 197 ~~l~~L~~L~l~~~~~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (477)
T 2id5_A 197 KRLYRLKVLEISHWPY--LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL-VYLRFLNLSYNPISTIEGSMLHELLR 273 (477)
T ss_dssp CSCTTCCEEEEECCTT--CCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC-TTCCEEECCSSCCCEECTTSCTTCTT
T ss_pred ccCcccceeeCCCCcc--ccccCcccccCccccEEECcCCcccccCHHHhcCc-cccCeeECCCCcCCccChhhcccccc
Confidence 7889999999976432 2222222222237888887 3443 456 78999999999887765 4789999
Q ss_pred ccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcccC-CCCCCCcceeeeccCC
Q 003753 714 LRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHK-AMAFPSLERIYVHGCP 781 (798)
Q Consensus 714 L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~-~~~~~~L~~L~l~~c~ 781 (798)
|+.|+|++|. +..+. +..+..+++|+.|+|+++ .+..++.. ...+++|+.|+++++|
T Consensus 274 L~~L~L~~n~-l~~~~---------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 274 LQEIQLVGGQ-LAVVE---------PYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCEEECCSSC-CSEEC---------TTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CCEEECCCCc-cceEC---------HHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 9999999864 44442 246778999999999994 67777653 4568999999998865
No 16
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=210.74 Aligned_cols=264 Identities=17% Similarity=0.134 Sum_probs=172.0
Q ss_pred CCcccchhhhhchhceeeEEeecCCCCCCCCC-CCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccc
Q 003753 479 TDKSIKEQETASWKEAVRVSLWRSPSIDSLSP-TPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLH 557 (798)
Q Consensus 479 ~~~~~~~~~~~~~~~l~~lsl~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp 557 (798)
+.....+|.. ..++++.|++.+| .+..++. .+..+++|++|++++|.+..+++..|.++++|++|++++| .++.+|
T Consensus 40 ~~~l~~iP~~-~~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~ 116 (353)
T 2z80_A 40 SGSLNSIPSG-LTEAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLS 116 (353)
T ss_dssp STTCSSCCTT-CCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCC
T ss_pred CCCccccccc-ccccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCC
Confidence 3334444432 2346777777777 6766664 4567777777777777777776655777777777777777 777776
Q ss_pred cc-ccCCCCCCEEEcCCCCCcccCc--cccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCC
Q 003753 558 VG-EGELIDLQYLNLSNTNICELPI--GIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVP 634 (798)
Q Consensus 558 ~~-i~~L~~L~~L~Ls~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 634 (798)
.. ++++++|++|++++|.+..+|. .+.++++|++|++++|..+..++...+..+++|++|++++|.+.
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~--------- 187 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ--------- 187 (353)
T ss_dssp HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC---------
T ss_pred HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC---------
Confidence 54 6777777777777777777765 56677777777777774466665544677777777777776654
Q ss_pred CcccccHHHhccCCCCCeeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCC-----ccc
Q 003753 635 GVTVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLT-----CIV 709 (798)
Q Consensus 635 ~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~-----~l~ 709 (798)
......+.++++|+.|+++.+....+..... ..+ ++|+.|++++|.++..+ ...
T Consensus 188 ---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-----------------~~~-~~L~~L~L~~n~l~~~~~~~l~~~~ 246 (353)
T 2z80_A 188 ---SYEPKSLKSIQNVSHLILHMKQHILLLEIFV-----------------DVT-SSVECLELRDTDLDTFHFSELSTGE 246 (353)
T ss_dssp ---EECTTTTTTCSEEEEEEEECSCSTTHHHHHH-----------------HHT-TTEEEEEEESCBCTTCCCC------
T ss_pred ---ccCHHHHhccccCCeecCCCCccccchhhhh-----------------hhc-ccccEEECCCCcccccccccccccc
Confidence 2334556667777777776655433332211 123 78899999998766543 233
Q ss_pred CCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcccCC-CCCCCcceeeeccCCC
Q 003753 710 YIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKA-MAFPSLERIYVHGCPS 782 (798)
Q Consensus 710 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~-~~~~~L~~L~l~~c~~ 782 (798)
..+.++.++++++..-..-.. ..+..+..+++|+.|+|+++ .++.++... ..+++|++|++++|+-
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~------~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLF------QVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHH------HHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccchhhccccccccccCcchh------hhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 567788888887543221100 11234667899999999984 677887764 6789999999988753
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=2.6e-21 Score=215.95 Aligned_cols=147 Identities=20% Similarity=0.199 Sum_probs=122.2
Q ss_pred EEecCCcccchhhhhchhceeeEEeecCCCCCCC-CCCCCCCCcceeeeecccccc-cccHHHHhcCCceeEEeCCCCcc
Q 003753 475 VFQETDKSIKEQETASWKEAVRVSLWRSPSIDSL-SPTPPCSPRLLTLLVRYTMIK-EFENKFFKSMYALRVLDSSQNAK 552 (798)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~l~~lsl~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~l~~Lr~L~L~~~~~ 552 (798)
+.+.+.+...+|. ..+++++|++++| .+..+ |..+..+++|++|++++|.+. .+++..|.++++|++|+|++| .
T Consensus 15 ~~c~~~~l~~lp~--l~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~ 90 (455)
T 3v47_A 15 AICINRGLHQVPE--LPAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-Q 90 (455)
T ss_dssp EECCSSCCSSCCC--CCTTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-T
T ss_pred cCcCCCCcccCCC--CCCccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-c
Confidence 3344555566665 3468999999999 88887 556789999999999999776 777777999999999999999 8
Q ss_pred cccc-cccccCCCCCCEEEcCCCCCcc-cCcc--ccCCCcccEEeCCCCCCcccc-cchhhcCCCCCccccccCCCCCC
Q 003753 553 LSKL-HVGEGELIDLQYLNLSNTNICE-LPIG--IKSCTHLRTLLLDGTENLKAI-PVGMLSSLLSLRVFSWVPTRYAG 626 (798)
Q Consensus 553 i~~l-p~~i~~L~~L~~L~Ls~~~i~~-lp~~--i~~l~~L~~L~l~~~~~l~~l-p~~~i~~L~~L~~L~l~~~~~~~ 626 (798)
++.+ |..++++++|++|++++|.+.. +|.. +.++++|++|++++|. +..+ |...+.++++|++|++++|.+..
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccc
Confidence 8876 7889999999999999999985 3444 8899999999999998 6666 55447899999999999988763
No 18
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=3e-21 Score=214.12 Aligned_cols=267 Identities=16% Similarity=0.139 Sum_probs=166.3
Q ss_pred hchhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCE
Q 003753 489 ASWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQY 568 (798)
Q Consensus 489 ~~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~ 568 (798)
..+++++.+++.++ .+..+| .+..+++|++|++++|.+..+| ++.+++|++|++++| .++.+| ++.+++|++
T Consensus 39 ~~l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 39 EQLATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTY 110 (457)
T ss_dssp HHHTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCE
T ss_pred hHcCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCCE
Confidence 34567788888887 777776 6777788888888888777775 677788888888888 777764 777888888
Q ss_pred EEcCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCC
Q 003753 569 LNLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLK 648 (798)
Q Consensus 569 L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 648 (798)
|++++|.+..+| ++.+++|++|++++|. +..+| ++.+++|++|++++|...+ .. .+..++
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~~-----------~~---~~~~l~ 170 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKIT-----------KL---DVTPQT 170 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCCC-----------CC---CCTTCT
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCccc-----------cc---ccccCC
Confidence 888888777775 7777888888888776 66664 5677777777777774331 11 244556
Q ss_pred CCCeeEEEEecccchhhhhhhhhhcccceeeee------ccCchhhhccCceEEeeccCCCCCCcccCCCCccEEEeecC
Q 003753 649 HLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM------GLPEAIFSQDLQDLSIINCSIKDLTCIVYIPRLRFLFAKDC 722 (798)
Q Consensus 649 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~lp~~~lp~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~ 722 (798)
+|+.|+++.+....++ ...+++|+.|.+ .++-..+ ++|+.|++++|.++.+| ++.+++|+.|++++|
T Consensus 171 ~L~~L~ls~n~l~~l~-----l~~l~~L~~L~l~~N~l~~~~l~~l-~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 171 QLTTLDCSFNKITELD-----VSQNKLLNRLNCDTNNITKLDLNQN-IQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVN 243 (457)
T ss_dssp TCCEEECCSSCCCCCC-----CTTCTTCCEEECCSSCCSCCCCTTC-TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSS
T ss_pred cCCEEECCCCccceec-----cccCCCCCEEECcCCcCCeeccccC-CCCCEEECcCCcccccC-ccccCCCCEEEeeCC
Confidence 6666666555444332 122335555554 1122344 56666666666666555 556666666666664
Q ss_pred Cchhhhhcccccc-----------C---------CCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccCCC
Q 003753 723 PSLEEIIASDLRF-----------E---------PSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCPS 782 (798)
Q Consensus 723 ~~l~~l~~~~~~~-----------~---------~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~~ 782 (798)
. ++.++...+.. . ........+++|+.|++++|+.++.++. .+++|+.|++++|++
T Consensus 244 ~-l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~~~ 319 (457)
T 3bz5_A 244 P-LTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQNPK 319 (457)
T ss_dssp C-CSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTCTT
T ss_pred c-CCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceecc---CCCcceEechhhccc
Confidence 3 22221100000 0 0001124567777777777776666664 345666666777777
Q ss_pred CCCCCCCCCCCC
Q 003753 783 LRKLPLSLESGK 794 (798)
Q Consensus 783 L~~lp~~~~~~~ 794 (798)
|+.|..+.|..+
T Consensus 320 L~~L~L~~N~l~ 331 (457)
T 3bz5_A 320 LVYLYLNNTELT 331 (457)
T ss_dssp CCEEECTTCCCS
T ss_pred CCEEECCCCccc
Confidence 776666655544
No 19
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=2.2e-21 Score=206.74 Aligned_cols=254 Identities=18% Similarity=0.250 Sum_probs=185.4
Q ss_pred ceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccc-cccccCCCCCCEEEc
Q 003753 493 EAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKL-HVGEGELIDLQYLNL 571 (798)
Q Consensus 493 ~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~L 571 (798)
+++.+.+.++ .+..+|..+ .++|++|++++|.+..+++..|.++++|++|++++| .++.+ |..++++++|++|++
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCC-CccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEEC
Confidence 5677888888 788888544 368889999999888887766888999999999998 78877 778888999999999
Q ss_pred CCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCC
Q 003753 572 SNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQ 651 (798)
Q Consensus 572 s~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 651 (798)
++|.+..+|..+. ++|++|++++|. +..+|...+..+++|++|++++|.+... +.....+..+ +|+
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENS----------GFEPGAFDGL-KLN 175 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGG----------GSCTTSSCSC-CCS
T ss_pred CCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccC----------CCCcccccCC-ccC
Confidence 9998888887665 789999999887 7888877688899999999988876410 1233444555 777
Q ss_pred eeEEEEecccchhhhhhhhhhcccceeeee------ccCc---hhhhccCceEEeeccCCCCCC--cccCCCCccEEEee
Q 003753 652 EISVIILTIDSLNKLKSSLKLQSCIRRLVM------GLPE---AIFSQDLQDLSIINCSIKDLT--CIVYIPRLRFLFAK 720 (798)
Q Consensus 652 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~lp~---~~lp~~L~~L~L~~~~l~~l~--~l~~l~~L~~L~L~ 720 (798)
.|+++.+....+... ..++|+.|++ .++. ..+ ++|+.|++++|.++.++ ++..+++|+.|+++
T Consensus 176 ~L~l~~n~l~~l~~~-----~~~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 176 YLRISEAKLTGIPKD-----LPETLNELHLDHNKIQAIELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249 (332)
T ss_dssp CCBCCSSBCSSCCSS-----SCSSCSCCBCCSSCCCCCCTTSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred EEECcCCCCCccCcc-----ccCCCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCCEEECC
Confidence 777766654443221 1136666666 1221 345 78888999888777765 47888899999998
Q ss_pred cCCchhhhhccccccCCCCcccccccccceeecCCccchhhcccCCC-------CCCCcceeeeccCCC
Q 003753 721 DCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAM-------AFPSLERIYVHGCPS 782 (798)
Q Consensus 721 ~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~-------~~~~L~~L~l~~c~~ 782 (798)
+|. +..++ ..+..+++|+.|++++ +.++.++.... .+++|+.|+++++|-
T Consensus 250 ~N~-l~~lp----------~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 250 NNK-LSRVP----------AGLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp SSC-CCBCC----------TTGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred CCc-CeecC----------hhhhcCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCcc
Confidence 853 44442 3567888999999988 45666654211 257788888888863
No 20
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=5.9e-21 Score=211.78 Aligned_cols=273 Identities=13% Similarity=0.132 Sum_probs=178.5
Q ss_pred ccchhhhhchhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccccccc
Q 003753 482 SIKEQETASWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEG 561 (798)
Q Consensus 482 ~~~~~~~~~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~ 561 (798)
....+....+++++.|.+.+| .+..+| +..+++|++|++++|.+..++ |+++++|++|++++| .++.+| ++
T Consensus 54 l~~~~~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l~~l~--~~ 124 (457)
T 3bz5_A 54 ITDMTGIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KLTKLD--VS 124 (457)
T ss_dssp CCCCTTGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CCSCCC--CT
T ss_pred cccChhhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cCCeec--CC
Confidence 334455556778999999999 888886 788999999999999888885 788999999999999 888886 88
Q ss_pred CCCCCCEEEcCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCC-------CCC
Q 003753 562 ELIDLQYLNLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGS-------SVP 634 (798)
Q Consensus 562 ~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~-------~~~ 634 (798)
.+++|++|++++|.++.+| ++.+++|++|++++|..+..++ +..+++|++|++++|.+....+.. .+.
T Consensus 125 ~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~ 199 (457)
T 3bz5_A 125 QNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCD 199 (457)
T ss_dssp TCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECC
T ss_pred CCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceeccccCCCCCEEECc
Confidence 9999999999999988875 7888889999998886566663 677888888888888765321000 000
Q ss_pred CcccccHHHhccCCCCCeeEEEEecccchhhhhhhhhhcccceeeee------ccCchhhhccCceEEeeccCCCCCC--
Q 003753 635 GVTVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM------GLPEAIFSQDLQDLSIINCSIKDLT-- 706 (798)
Q Consensus 635 ~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~lp~~~lp~~L~~L~L~~~~l~~l~-- 706 (798)
+..-..+ .+..+++|+.|+++.+....++ ...+++|+.|.+ .+|...+ ++|+.|++++++++.+.
T Consensus 200 ~N~l~~~-~l~~l~~L~~L~Ls~N~l~~ip-----~~~l~~L~~L~l~~N~l~~~~~~~l-~~L~~L~l~~n~L~~L~l~ 272 (457)
T 3bz5_A 200 TNNITKL-DLNQNIQLTFLDCSSNKLTEID-----VTPLTQLTYFDCSVNPLTELDVSTL-SKLTTLHCIQTDLLEIDLT 272 (457)
T ss_dssp SSCCSCC-CCTTCTTCSEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCSCCCCTTC-TTCCEEECTTCCCSCCCCT
T ss_pred CCcCCee-ccccCCCCCEEECcCCcccccC-----ccccCCCCEEEeeCCcCCCcCHHHC-CCCCEEeccCCCCCEEECC
Confidence 0000001 2455566666666555444432 222345555555 2233444 45555544444333221
Q ss_pred --------cccCCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcccCCCCCCCcceeeec
Q 003753 707 --------CIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVH 778 (798)
Q Consensus 707 --------~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~ 778 (798)
+.+.+++|+.|++++|..++.++.....-. .-.+..+++|+.|++++ +.++.++ ...+++|+.|+++
T Consensus 273 ~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~--~L~l~~~~~L~~L~L~~-N~l~~l~--l~~l~~L~~L~l~ 347 (457)
T 3bz5_A 273 HNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT--ELDLSQNPKLVYLYLNN-TELTELD--VSHNTKLKSLSCV 347 (457)
T ss_dssp TCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCS--CCCCTTCTTCCEEECTT-CCCSCCC--CTTCTTCSEEECC
T ss_pred CCccCCcccccccccCCEEECCCCcccceeccCCCcce--EechhhcccCCEEECCC-Ccccccc--cccCCcCcEEECC
Confidence 234567788888887776665542110000 11355667888888877 4566653 5678888888886
Q ss_pred cC
Q 003753 779 GC 780 (798)
Q Consensus 779 ~c 780 (798)
++
T Consensus 348 ~N 349 (457)
T 3bz5_A 348 NA 349 (457)
T ss_dssp SS
T ss_pred CC
Confidence 63
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=5.7e-21 Score=213.56 Aligned_cols=248 Identities=19% Similarity=0.226 Sum_probs=154.8
Q ss_pred chhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEE
Q 003753 490 SWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYL 569 (798)
Q Consensus 490 ~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L 569 (798)
.+++++.+++.++ .+..+| .+..+++|++|++++|.+..+++ |.++++|++|++++| .+..+|. ++++++|++|
T Consensus 44 ~l~~l~~L~l~~~-~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRL-GIKSID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP-LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEE
T ss_pred HhccccEEecCCC-CCccCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCC-ccccChh-hcCCCCCCEE
Confidence 3457777887777 777777 56777788888888887777776 777888888888887 7777766 7778888888
Q ss_pred EcCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCcccccc---------------------CCCCCCcc
Q 003753 570 NLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWV---------------------PTRYAGFN 628 (798)
Q Consensus 570 ~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~---------------------~~~~~~~~ 628 (798)
++++|.+..+|. +.++++|++|++++|. +..+|. +..+++|++|++. +|.+.
T Consensus 118 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~--- 190 (466)
T 1o6v_A 118 TLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS--- 190 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC---
T ss_pred ECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC---
Confidence 888887777764 7777888888887776 666653 5666666666654 33221
Q ss_pred CCCCCCCcccccHHHhccCCCCCeeEEEEecccchhhhhhhhhhcccceeeee------ccCc-hhhhccCceEEeeccC
Q 003753 629 YGSSVPGVTVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM------GLPE-AIFSQDLQDLSIINCS 701 (798)
Q Consensus 629 ~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~lp~-~~lp~~L~~L~L~~~~ 701 (798)
.+..+..+++|+.|+++.+....... ...+++|+.|.+ .++. ..+ ++|+.|++++|.
T Consensus 191 -----------~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~l~~l-~~L~~L~l~~n~ 254 (466)
T 1o6v_A 191 -----------DISVLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKDIGTLASL-TNLTDLDLANNQ 254 (466)
T ss_dssp -----------CCGGGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSC
T ss_pred -----------CChhhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCCcccchhhhcC-CCCCEEECCCCc
Confidence 11234445555555554433322221 122334555544 1111 333 556666666665
Q ss_pred CCCCCcccCCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccC
Q 003753 702 IKDLTCIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGC 780 (798)
Q Consensus 702 l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c 780 (798)
++.++.+..+++|+.|++++|. +..+ ..+..+++|+.|++++| .+..++. ...+++|+.|++++|
T Consensus 255 l~~~~~~~~l~~L~~L~l~~n~-l~~~-----------~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 255 ISNLAPLSGLTKLTELKLGANQ-ISNI-----------SPLAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFN 319 (466)
T ss_dssp CCCCGGGTTCTTCSEEECCSSC-CCCC-----------GGGTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSS
T ss_pred cccchhhhcCCCCCEEECCCCc-cCcc-----------ccccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCC
Confidence 5555555566666666666543 2222 12566788888888874 4555544 556788888888776
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=5.1e-21 Score=208.83 Aligned_cols=275 Identities=17% Similarity=0.147 Sum_probs=205.3
Q ss_pred cccchhh--hhchhceeeEEeecCCCCCCCCC-CCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccc
Q 003753 481 KSIKEQE--TASWKEAVRVSLWRSPSIDSLSP-TPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLH 557 (798)
Q Consensus 481 ~~~~~~~--~~~~~~l~~lsl~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp 557 (798)
....+|. ...+++++.|.+.++ .+..++. .+..+++|++|++++|.+..+++..|+++++|++|++++| .++.+|
T Consensus 56 ~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~ 133 (390)
T 3o6n_A 56 TMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLP 133 (390)
T ss_dssp EESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred chhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCC
Confidence 3334443 345678999999999 8888874 5689999999999999999998888999999999999999 999998
Q ss_pred cc-ccCCCCCCEEEcCCCCCcccC-ccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCC--
Q 003753 558 VG-EGELIDLQYLNLSNTNICELP-IGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSV-- 633 (798)
Q Consensus 558 ~~-i~~L~~L~~L~Ls~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~-- 633 (798)
.. ++++++|++|++++|.+..++ ..+.++++|++|++++|. +..++ +..+++|++|++++|.+........+
T Consensus 134 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~ 209 (390)
T 3o6n_A 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEE 209 (390)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSE
T ss_pred HHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeecccccccccCCCCcceE
Confidence 76 489999999999999998884 468999999999999997 77775 56788888888888766532111110
Q ss_pred ---CCcccccHHHhccCCCCCeeEEEEecccchhhhhhhhhhcccceeeee------cc-Cc--hhhhccCceEEeeccC
Q 003753 634 ---PGVTVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM------GL-PE--AIFSQDLQDLSIINCS 701 (798)
Q Consensus 634 ---~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~l-p~--~~lp~~L~~L~L~~~~ 701 (798)
.+..-..+ .....++|+.|+++.+...... ....+++|+.|++ .+ |. ..+ ++|+.|+|++|.
T Consensus 210 L~l~~n~l~~~-~~~~~~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~ 283 (390)
T 3o6n_A 210 LDASHNSINVV-RGPVNVELTILKLQHNNLTDTA----WLLNYPGLVEVDLSYNELEKIMYHPFVKM-QRLERLYISNNR 283 (390)
T ss_dssp EECCSSCCCEE-ECCCCSSCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCEEESGGGTTC-SSCCEEECCSSC
T ss_pred EECCCCeeeec-cccccccccEEECCCCCCcccH----HHcCCCCccEEECCCCcCCCcChhHcccc-ccCCEEECCCCc
Confidence 00000000 0122467888888766655442 2334557888888 12 22 456 789999999998
Q ss_pred CCCCCc-ccCCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccC
Q 003753 702 IKDLTC-IVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGC 780 (798)
Q Consensus 702 l~~l~~-l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c 780 (798)
++.++. +..+++|++|+|++|. +..++ ..+..+++|+.|+|+++ .+..++ ...+++|+.|+++++
T Consensus 284 l~~~~~~~~~l~~L~~L~L~~n~-l~~~~----------~~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 284 LVALNLYGQPIPTLKVLDLSHNH-LLHVE----------RNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp CCEEECSSSCCTTCCEEECCSSC-CCCCG----------GGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSS
T ss_pred CcccCcccCCCCCCCEEECCCCc-ceecC----------ccccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCC
Confidence 887654 5678999999999864 44442 35678999999999995 566665 567899999999886
Q ss_pred C
Q 003753 781 P 781 (798)
Q Consensus 781 ~ 781 (798)
+
T Consensus 350 ~ 350 (390)
T 3o6n_A 350 D 350 (390)
T ss_dssp C
T ss_pred C
Confidence 4
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=1.1e-20 Score=211.07 Aligned_cols=271 Identities=16% Similarity=0.259 Sum_probs=159.3
Q ss_pred cchhhhhchhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccC
Q 003753 483 IKEQETASWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGE 562 (798)
Q Consensus 483 ~~~~~~~~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~ 562 (798)
..++....+++++.|++.+| .+..+++ +..+++|++|++++|.+..+++ +.++++|++|++++| .++.+|. +.+
T Consensus 59 ~~l~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-~~~ 132 (466)
T 1o6v_A 59 KSIDGVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDIDP-LKN 132 (466)
T ss_dssp CCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTT
T ss_pred ccCcchhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCCCChH-HcC
Confidence 33444455667777888777 7777764 6777777777777777777766 777777777777777 7777765 677
Q ss_pred CCCCCEEEcCCCCCcccCc--------------------cccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCC
Q 003753 563 LIDLQYLNLSNTNICELPI--------------------GIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPT 622 (798)
Q Consensus 563 L~~L~~L~Ls~~~i~~lp~--------------------~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 622 (798)
+++|++|++++|.+..+|. .+.++++|++|++++|. +..++. +..+++|++|++++|
T Consensus 133 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 133 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISV--LAKLTNLESLIATNN 209 (466)
T ss_dssp CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSS
T ss_pred CCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChh--hccCCCCCEEEecCC
Confidence 7777777777776554431 25567778888888886 666654 778888888888887
Q ss_pred CCCCccC-C-------CCCCCcccccHHHhccCCCCCeeEEEEecccchhhhhhhhhhcccceeeee------ccCc-hh
Q 003753 623 RYAGFNY-G-------SSVPGVTVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM------GLPE-AI 687 (798)
Q Consensus 623 ~~~~~~~-~-------~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~lp~-~~ 687 (798)
.+..... . ..+.+..-..+..+..+++|+.|+++.+....... ...+++|+.|.+ .+|. ..
T Consensus 210 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~ 285 (466)
T 1o6v_A 210 QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNISPLAG 285 (466)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCCCCGGGTT
T ss_pred cccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCCccCccccccC
Confidence 7652100 0 00000000111234444445555444433322221 122234444444 1111 33
Q ss_pred hhccCceEEeeccCCCCCCcccCCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcccCCC
Q 003753 688 FSQDLQDLSIINCSIKDLTCIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAM 767 (798)
Q Consensus 688 lp~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~ 767 (798)
+ ++|+.|++++|.++.++.++.+++|+.|++++|. +..+ ..+..+++|+.|++++| .+..++ ...
T Consensus 286 l-~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~-----------~~~~~l~~L~~L~l~~n-~l~~~~-~l~ 350 (466)
T 1o6v_A 286 L-TALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDI-----------SPVSSLTKLQRLFFYNN-KVSDVS-SLA 350 (466)
T ss_dssp C-TTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC-CSCC-----------GGGGGCTTCCEEECCSS-CCCCCG-GGT
T ss_pred C-CccCeEEcCCCcccCchhhcCCCCCCEEECcCCc-CCCc-----------hhhccCccCCEeECCCC-ccCCch-hhc
Confidence 3 5566666666655555555566666666666543 2222 12456777777777775 455443 345
Q ss_pred CCCCcceeeeccCC
Q 003753 768 AFPSLERIYVHGCP 781 (798)
Q Consensus 768 ~~~~L~~L~l~~c~ 781 (798)
.+++|+.|++++|+
T Consensus 351 ~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 351 NLTNINWLSAGHNQ 364 (466)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cCCCCCEEeCCCCc
Confidence 67788888877763
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=5.7e-21 Score=220.21 Aligned_cols=268 Identities=18% Similarity=0.159 Sum_probs=202.0
Q ss_pred hchhceeeEEeecCCCCCCCCC-CCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccccc-ccCCCCC
Q 003753 489 ASWKEAVRVSLWRSPSIDSLSP-TPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVG-EGELIDL 566 (798)
Q Consensus 489 ~~~~~l~~lsl~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~-i~~L~~L 566 (798)
..+++++.|++.+| .+..+++ .+..+++|++|++++|.+..+++..|+++++|++|+|++| .++.+|.. ++++++|
T Consensus 72 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 72 DSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKL 149 (597)
T ss_dssp HHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred ccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCC
Confidence 34678999999999 8888764 6789999999999999999999988999999999999999 99999876 4899999
Q ss_pred CEEEcCCCCCcccC-ccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCc--ccccHHH
Q 003753 567 QYLNLSNTNICELP-IGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGV--TVLLLEE 643 (798)
Q Consensus 567 ~~L~Ls~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~--~~~~~~~ 643 (798)
++|+|++|.+..+| ..++++++|++|++++|. +..++ ++.+++|++|++++|.+..+.....+... ....+..
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 225 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCE
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccc
Confidence 99999999998885 469999999999999997 77776 45788888888888776532211110000 0000000
Q ss_pred h--ccCCCCCeeEEEEecccchhhhhhhhhhcccceeeee------cc-Cc--hhhhccCceEEeeccCCCCCCc-ccCC
Q 003753 644 L--ESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM------GL-PE--AIFSQDLQDLSIINCSIKDLTC-IVYI 711 (798)
Q Consensus 644 L--~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~l-p~--~~lp~~L~~L~L~~~~l~~l~~-l~~l 711 (798)
+ ...++|+.|+++.+..... .....+++|+.|++ .+ |. ..+ ++|+.|+|++|.++.+|. +..+
T Consensus 226 ~~~~~~~~L~~L~L~~n~l~~~----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~~~l 300 (597)
T 3oja_B 226 VRGPVNVELTILKLQHNNLTDT----AWLLNYPGLVEVDLSYNELEKIMYHPFVKM-QRLERLYISNNRLVALNLYGQPI 300 (597)
T ss_dssp EECSCCSCCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCEEESGGGTTC-SSCCEEECTTSCCCEEECSSSCC
T ss_pred cccccCCCCCEEECCCCCCCCC----hhhccCCCCCEEECCCCccCCCCHHHhcCc-cCCCEEECCCCCCCCCCcccccC
Confidence 0 1125677888776655543 22334558888888 12 22 456 789999999998887664 5678
Q ss_pred CCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccCC
Q 003753 712 PRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCP 781 (798)
Q Consensus 712 ~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~ 781 (798)
++|+.|+|++|. +..++ ..+..+++|+.|+|++| .+..++ ...+++|+.|++++||
T Consensus 301 ~~L~~L~Ls~N~-l~~i~----------~~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 301 PTLKVLDLSHNH-LLHVE----------RNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp TTCCEEECCSSC-CCCCG----------GGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCcEEECCCCC-CCccC----------cccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCC
Confidence 999999999864 44443 35678999999999995 466654 5678999999999875
No 25
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=2.7e-21 Score=203.59 Aligned_cols=129 Identities=19% Similarity=0.146 Sum_probs=66.7
Q ss_pred hceeeEEeecCCCCCCCCCC-CCCCCcceeeeecccccccc---cHHHHhcCCceeEEeCCCCcccccccccccCCCCCC
Q 003753 492 KEAVRVSLWRSPSIDSLSPT-PPCSPRLLTLLVRYTMIKEF---ENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQ 567 (798)
Q Consensus 492 ~~l~~lsl~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~l---~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~ 567 (798)
+++++|.+.++ .+..+|.. +..+++|++|++++|.+..+ +.. +..+++|++|++++| .+..+|..+..+++|+
T Consensus 28 ~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFN-GVITMSSNFLGLEQLE 104 (306)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSC-SEEEEEEEEETCTTCC
T ss_pred CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCC-ccccChhhcCCCCCCC
Confidence 35555555555 55555533 24555555555555544433 233 344555555555555 5555555555555555
Q ss_pred EEEcCCCCCcccCc--cccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCC
Q 003753 568 YLNLSNTNICELPI--GIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRY 624 (798)
Q Consensus 568 ~L~Ls~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 624 (798)
+|++++|.+..+|. .+..+++|++|++++|. +..++...+..+++|++|++++|.+
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEE
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcc
Confidence 55555555555432 45555555555555554 3333333355555555555555543
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.85 E-value=6.9e-21 Score=220.82 Aligned_cols=281 Identities=13% Similarity=0.155 Sum_probs=199.9
Q ss_pred chhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccc-ccc--ccHHHHhcC------CceeEEeCCCCcccccccc--
Q 003753 490 SWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTM-IKE--FENKFFKSM------YALRVLDSSQNAKLSKLHV-- 558 (798)
Q Consensus 490 ~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~--l~~~~~~~l------~~Lr~L~L~~~~~i~~lp~-- 558 (798)
..++++.|.+.+|.....+|..+.++++|++|++++|. +.. +|.. ++.+ ++|++|++++| .++.+|.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~ 324 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYN-NLKTFPVET 324 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSS-CCSSCCCHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCC-cCCccCchh
Confidence 46789999999984456788888999999999999997 874 7776 6665 99999999999 8999998
Q ss_pred cccCCCCCCEEEcCCCCCc-ccCccccCCCcccEEeCCCCCCcccccchhhcCCCC-CccccccCCCCCCccCCCC----
Q 003753 559 GEGELIDLQYLNLSNTNIC-ELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLS-LRVFSWVPTRYAGFNYGSS---- 632 (798)
Q Consensus 559 ~i~~L~~L~~L~Ls~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~-L~~L~l~~~~~~~~~~~~~---- 632 (798)
.++++++|++|++++|.+. .+| .++.+++|++|++++|. +..+|.. +..+++ |++|++++|.+......+.
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l 401 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPAN-FCGFTEQVENLSFAHNKLKYIPNIFDAKSV 401 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTT-SEEECTTCCEEECCSSCCSSCCSCCCTTCS
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHh-hhhhcccCcEEEccCCcCcccchhhhhccc
Confidence 8999999999999999998 899 89999999999999997 7789987 889998 9999999988763211100
Q ss_pred -------CC--CcccccHHHhc-------cCCCCCeeEEEEecccchhhhhhhhhhcccceeeee------ccCchhhh-
Q 003753 633 -------VP--GVTVLLLEELE-------SLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM------GLPEAIFS- 689 (798)
Q Consensus 633 -------~~--~~~~~~~~~L~-------~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~lp~~~lp- 689 (798)
+. ...+.....+. .+++|+.|+++.+....+... ....+++|+.|.+ .+|...++
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~--~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 479 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE--LFSTGSPLSSINLMGNMLTEIPKNSLKD 479 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH--HHHTTCCCSEEECCSSCCSBCCSSSSEE
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHH--HHccCCCCCEEECCCCCCCCcCHHHhcc
Confidence 00 00111122233 556777777766655433221 1122457777777 34442220
Q ss_pred --------ccCceEEeeccCCCCCCc-cc--CCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCC---
Q 003753 690 --------QDLQDLSIINCSIKDLTC-IV--YIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFK--- 755 (798)
Q Consensus 690 --------~~L~~L~L~~~~l~~l~~-l~--~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~--- 755 (798)
++|+.|+|++|.++.+|. +. .+++|+.|+|++|. +..++ ..+..+++|+.|+|++
T Consensus 480 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip----------~~~~~l~~L~~L~Ls~N~~ 548 (636)
T 4eco_A 480 ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFP----------TQPLNSSTLKGFGIRNQRD 548 (636)
T ss_dssp TTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSC-CSSCC----------CGGGGCSSCCEEECCSCBC
T ss_pred ccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCC-CCCcC----------hhhhcCCCCCEEECCCCcc
Confidence 278888888887777663 44 78888888888854 33342 3556677777777743
Q ss_pred ---ccchhhcccCCCCCCCcceeeeccCCCCCCCCCC
Q 003753 756 ---LPNLKNICHKAMAFPSLERIYVHGCPSLRKLPLS 789 (798)
Q Consensus 756 ---~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~lp~~ 789 (798)
+...+.++.....+++|+.|++++| +++.+|..
T Consensus 549 ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~ 584 (636)
T 4eco_A 549 AQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK 584 (636)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC
T ss_pred cccCcccccChHHHhcCCCCCEEECCCC-cCCccCHh
Confidence 3334456666666777777777776 34666654
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=6.1e-21 Score=218.40 Aligned_cols=144 Identities=23% Similarity=0.206 Sum_probs=120.2
Q ss_pred CCcccchhhhhchhceeeEEeecCCCCCCCC-CCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccc
Q 003753 479 TDKSIKEQETASWKEAVRVSLWRSPSIDSLS-PTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLH 557 (798)
Q Consensus 479 ~~~~~~~~~~~~~~~l~~lsl~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp 557 (798)
+.+...+|.. .++.++.|++.+| .+..++ ..+..+++|++|++++|.+..+++..|.++++|++|++++| .++.+|
T Consensus 14 ~~~l~~ip~~-~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~ 90 (549)
T 2z81_A 14 SRSFTSIPSG-LTAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLS 90 (549)
T ss_dssp TSCCSSCCSC-CCTTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCC
T ss_pred CCcccccccc-CCCCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccC
Confidence 3345555543 2368999999999 887764 45789999999999999999988777999999999999999 888886
Q ss_pred cc-ccCCCCCCEEEcCCCCCccc--CccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCC
Q 003753 558 VG-EGELIDLQYLNLSNTNICEL--PIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 558 ~~-i~~L~~L~~L~Ls~~~i~~l--p~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 625 (798)
.. ++++++|++|++++|.+..+ |..++++++|++|++++|..+..+|...+.++++|++|++++|.+.
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 54 89999999999999998854 6788999999999999997678888655889999999999988765
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=5.9e-21 Score=225.21 Aligned_cols=281 Identities=13% Similarity=0.168 Sum_probs=145.5
Q ss_pred hhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccc-ccc--ccHHHHhcCC-------ceeEEeCCCCcccccccc--
Q 003753 491 WKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTM-IKE--FENKFFKSMY-------ALRVLDSSQNAKLSKLHV-- 558 (798)
Q Consensus 491 ~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~--l~~~~~~~l~-------~Lr~L~L~~~~~i~~lp~-- 558 (798)
+++++.|.+.+|.....+|..+.++++|++|++++|. +.. +|.. ++++. +|++|+|++| .++.+|.
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~ 567 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYN-NLEEFPASA 567 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSS-CCCBCCCHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCC-cCCccCChh
Confidence 3445555555542234444444555555555555554 442 4443 33333 5555555555 5555555
Q ss_pred cccCCCCCCEEEcCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCC-CccccccCCCCCCccCCCCCCC--
Q 003753 559 GEGELIDLQYLNLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLS-LRVFSWVPTRYAGFNYGSSVPG-- 635 (798)
Q Consensus 559 ~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~-L~~L~l~~~~~~~~~~~~~~~~-- 635 (798)
.++++++|++|+|++|.+..+| .++++++|++|++++|. +..+|.. +..+++ |++|++++|.+..+...+....
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~ 644 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPED-FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC-CSCCCTT-SCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred hhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc-cccchHH-HhhccccCCEEECcCCCCCcCchhhhccccC
Confidence 5666666666666666655556 56666666666666665 4556655 556665 6666666665542110000000
Q ss_pred -c-----ccccH----H----Hhc--cCCCCCeeEEEEecccchhhhhhhhhhcccceeeee------ccCchhhh----
Q 003753 636 -V-----TVLLL----E----ELE--SLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM------GLPEAIFS---- 689 (798)
Q Consensus 636 -~-----~~~~~----~----~L~--~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~lp~~~lp---- 689 (798)
. ....+ . .+. .+.+|+.|+++.+....++... ...+++|+.|.+ .+|...+.
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~--~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~ 722 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL--FATGSPISTIILSNNLMTSIPENSLKPKDG 722 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHH--HHTTCCCSEEECCSCCCSCCCTTSSSCTTS
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHH--HccCCCCCEEECCCCcCCccChHHhccccc
Confidence 0 00000 0 011 1224555555444333222111 112345666665 23331110
Q ss_pred -----ccCceEEeeccCCCCCCc-cc--CCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCC------
Q 003753 690 -----QDLQDLSIINCSIKDLTC-IV--YIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFK------ 755 (798)
Q Consensus 690 -----~~L~~L~L~~~~l~~l~~-l~--~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~------ 755 (798)
++|+.|+|++|.++.+|. +. .+++|+.|+|++|. +..+ +..+..+++|+.|+|++
T Consensus 723 ~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~l----------p~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSF----------PTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp CCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSC-CSSC----------CCGGGGCTTCCEEECCCCBCTTC
T ss_pred cccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCC-CCcc----------chhhhcCCCCCEEECCCCCCccc
Confidence 277777777776666653 43 67777777777753 3333 23556777777777765
Q ss_pred ccchhhcccCCCCCCCcceeeeccCCCCCCCCCCC
Q 003753 756 LPNLKNICHKAMAFPSLERIYVHGCPSLRKLPLSL 790 (798)
Q Consensus 756 ~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~lp~~~ 790 (798)
+.....+|.....+++|+.|++++| ++..+|...
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~l 825 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKL 825 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCC
T ss_pred ccccccChHHHhcCCCCCEEECCCC-CCCccCHhh
Confidence 3334455556666777777777776 346676643
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=3.7e-20 Score=210.34 Aligned_cols=136 Identities=21% Similarity=0.192 Sum_probs=96.5
Q ss_pred CcccchhhhhchhceeeEEeecCCCCCCCC-CCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccc
Q 003753 480 DKSIKEQETASWKEAVRVSLWRSPSIDSLS-PTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHV 558 (798)
Q Consensus 480 ~~~~~~~~~~~~~~l~~lsl~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~ 558 (798)
.....+|.... +++++|++++| .+..++ ..+..+++|++|++++|.+..+++..|.++++|++|+|++| .++.+|.
T Consensus 10 n~l~~ip~~~~-~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~ 86 (520)
T 2z7x_B 10 NGLIHVPKDLS-QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISC 86 (520)
T ss_dssp SCCSSCCCSCC-TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEEC
T ss_pred CCccccccccc-ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCc
Confidence 33444443222 67788888887 777665 24577788888888888777776666778888888888888 7777776
Q ss_pred cccCCCCCCEEEcCCCCCcc--cCccccCCCcccEEeCCCCCCcccccchhhcCCCCC--ccccccCCCC
Q 003753 559 GEGELIDLQYLNLSNTNICE--LPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSL--RVFSWVPTRY 624 (798)
Q Consensus 559 ~i~~L~~L~~L~Ls~~~i~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L--~~L~l~~~~~ 624 (798)
. .+++|++|++++|.+.. +|..++++++|++|++++|. +... .+..+++| ++|++++|.+
T Consensus 87 ~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 87 H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh---hccccccceeeEEEeecccc
Confidence 6 67888888888887765 46777888888888888776 4442 25667777 8888877765
No 30
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=209.13 Aligned_cols=131 Identities=21% Similarity=0.223 Sum_probs=67.4
Q ss_pred hceeeEEeecCCCCCCCC-CCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccc-cccCCCCCCEE
Q 003753 492 KEAVRVSLWRSPSIDSLS-PTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHV-GEGELIDLQYL 569 (798)
Q Consensus 492 ~~l~~lsl~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L 569 (798)
++++.|.+.+| .+..++ ..+.++++|++|++++|.+..++...|.++++|++|+|++| .++.+|. .+..+++|++|
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCcee
Confidence 34555555555 444443 23345555555555555555555444555555555555555 5555543 34555555555
Q ss_pred EcCCCCCcccCc-cccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCC
Q 003753 570 NLSNTNICELPI-GIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRY 624 (798)
Q Consensus 570 ~Ls~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 624 (798)
+|++|.+..+|. .+.++++|++|++++|..+..++.+.+.++++|++|++++|.+
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 555555555432 3455555555555554445555544455555555555555543
No 31
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=1.3e-20 Score=209.76 Aligned_cols=130 Identities=21% Similarity=0.213 Sum_probs=64.9
Q ss_pred ceeeEEeecCCCCCCCC-CCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccc-cccCCCCCCEEE
Q 003753 493 EAVRVSLWRSPSIDSLS-PTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHV-GEGELIDLQYLN 570 (798)
Q Consensus 493 ~l~~lsl~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~ 570 (798)
+++.|++.+| .+..++ ..+.++++|++|++++|.+..+++..|.++++|++|+|++| .++.+|. .+..+++|++|+
T Consensus 76 ~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 76 NTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred CccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence 4555555555 444442 23345555555555555555554444555555555555555 4554433 244455555555
Q ss_pred cCCCCCcccCc-cccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCC
Q 003753 571 LSNTNICELPI-GIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRY 624 (798)
Q Consensus 571 Ls~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 624 (798)
|++|.+..+|. .+.++++|++|++++|..+..+|.+.+..+++|++|++++|.+
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 55555554432 3445555555555554445555544455555555555555443
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=1.5e-20 Score=221.65 Aligned_cols=269 Identities=9% Similarity=0.064 Sum_probs=152.7
Q ss_pred ceeeEEeecCCCCCCCCC--CCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCC-CCEE
Q 003753 493 EAVRVSLWRSPSIDSLSP--TPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELID-LQYL 569 (798)
Q Consensus 493 ~l~~lsl~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~-L~~L 569 (798)
+++.|.+.+| .+..+|. .+.++++|+.|++++|.+..+| .|+++++|++|+|++| .+..+|..+..+++ |++|
T Consensus 549 ~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 549 KIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGL 624 (876)
T ss_dssp TCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSS-CCSCCCTTSCEECTTCCEE
T ss_pred CccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCC-ccccchHHHhhccccCCEE
Confidence 4444444444 4444443 3444444555555444444444 2444445555555544 44444444444444 5555
Q ss_pred EcCCCCCcccCccccCCCc--ccEEeCCCCCCcccccchh---hc--CCCCCccccccCCCCCCccCCCCCCCcccccHH
Q 003753 570 NLSNTNICELPIGIKSCTH--LRTLLLDGTENLKAIPVGM---LS--SLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLE 642 (798)
Q Consensus 570 ~Ls~~~i~~lp~~i~~l~~--L~~L~l~~~~~l~~lp~~~---i~--~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 642 (798)
+|++|.+..+|..+..+.. |+.|++++|. +...++.. +. .+++|+.|++++|.+. .....
T Consensus 625 ~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~------------~lp~~ 691 (876)
T 4ecn_A 625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYNEIQ------------KFPTE 691 (876)
T ss_dssp ECCSSCCCSCCSCCCTTCSSCEEEEECCSSC-TTTTSSSCSSCTTTCCCCCEEEEECCSSCCC------------SCCHH
T ss_pred ECcCCCCCcCchhhhccccCCCCEEECcCCc-CCCccccchhhhccccCCCcCEEEccCCcCC------------ccCHH
Confidence 5555444444444433322 4444444444 21111110 11 2234455555444432 22223
Q ss_pred HhccCCCCCeeEEEEecccchhhhhhh-----hhhcccceeeee------ccCc--h--hhhccCceEEeeccCCCCCC-
Q 003753 643 ELESLKHLQEISVIILTIDSLNKLKSS-----LKLQSCIRRLVM------GLPE--A--IFSQDLQDLSIINCSIKDLT- 706 (798)
Q Consensus 643 ~L~~l~~L~~L~l~~~~~~~~~~l~~~-----~~~~~~L~~L~l------~lp~--~--~lp~~L~~L~L~~~~l~~l~- 706 (798)
-+..+++|+.|+++.+....++..... ...+++|+.|.+ .+|. . .+ ++|+.|+|++|.++.+|
T Consensus 692 ~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l-~~L~~L~Ls~N~L~~lp~ 770 (876)
T 4ecn_A 692 LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL-PYLSNMDVSYNCFSSFPT 770 (876)
T ss_dssp HHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTC-TTCCEEECCSSCCSSCCC
T ss_pred HHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccC-CCcCEEEeCCCCCCccch
Confidence 345788999999987766544332211 112337888888 3554 2 67 89999999999888776
Q ss_pred cccCCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccCCCCCCC
Q 003753 707 CIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCPSLRKL 786 (798)
Q Consensus 707 ~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l 786 (798)
.+..+++|+.|+|++|..+.. .......+..+..+++|+.|+|++| .++.+|... +++|+.|++++|+ +..+
T Consensus 771 ~l~~L~~L~~L~Ls~N~~ls~----N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~l--~~~L~~LdLs~N~-l~~i 842 (876)
T 4ecn_A 771 QPLNSSQLKAFGIRHQRDAEG----NRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKL--TPQLYILDIADNP-NISI 842 (876)
T ss_dssp GGGGCTTCCEEECCCCBCTTC----CBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCC--CSSSCEEECCSCT-TCEE
T ss_pred hhhcCCCCCEEECCCCCCccc----ccccccChHHHhcCCCCCEEECCCC-CCCccCHhh--cCCCCEEECCCCC-CCcc
Confidence 588999999999987541110 0001123457788999999999996 458888764 3799999999986 4444
Q ss_pred C
Q 003753 787 P 787 (798)
Q Consensus 787 p 787 (798)
+
T Consensus 843 ~ 843 (876)
T 4ecn_A 843 D 843 (876)
T ss_dssp E
T ss_pred C
Confidence 3
No 33
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=5.6e-20 Score=213.06 Aligned_cols=285 Identities=15% Similarity=0.117 Sum_probs=190.8
Q ss_pred ecCCcccchhhhhchhceeeEEeecCCCCCCC-CCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccc
Q 003753 477 QETDKSIKEQETASWKEAVRVSLWRSPSIDSL-SPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSK 555 (798)
Q Consensus 477 ~~~~~~~~~~~~~~~~~l~~lsl~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~ 555 (798)
+.+.+...+|.. -.+.++.|++++| .+..+ |..+.++++|++|++++|.+..+++..|.++++|++|+|++| .++.
T Consensus 19 c~~~~l~~iP~~-l~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~ 95 (606)
T 3t6q_A 19 CENLGLNEIPGT-LPNSTECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIF 95 (606)
T ss_dssp CTTSCCSSCCTT-SCTTCCEEECTTC-CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSE
T ss_pred CCCCCcccCcCC-CCCcCcEEEccCC-ccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccc
Confidence 344455555542 2358999999999 88888 446789999999999999999887777999999999999999 8877
Q ss_pred c-cccccCCCCCCEEEcCCCCCccc-CccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCC
Q 003753 556 L-HVGEGELIDLQYLNLSNTNICEL-PIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSV 633 (798)
Q Consensus 556 l-p~~i~~L~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 633 (798)
+ |..++++++|++|++++|.+..+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-------- 166 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIH-------- 166 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCC--------
T ss_pred cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCccc--------
Confidence 6 77899999999999999999988 6789999999999999997 77764222566999999999998775
Q ss_pred CCcccccHHHhccCCCCC--eeEEEEecccchhhhhhh------------------------------------------
Q 003753 634 PGVTVLLLEELESLKHLQ--EISVIILTIDSLNKLKSS------------------------------------------ 669 (798)
Q Consensus 634 ~~~~~~~~~~L~~l~~L~--~L~l~~~~~~~~~~l~~~------------------------------------------ 669 (798)
......+..+++|+ .|+++.+....+......
T Consensus 167 ----~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~ 242 (606)
T 3t6q_A 167 ----YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242 (606)
T ss_dssp ----EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCC
T ss_pred ----ccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccc
Confidence 34456677777777 444433322211100000
Q ss_pred -----hhhc--ccceeeee------ccCc---hhhhccCceEEeeccCCCCCC-cccCCCCccEEEeecCCchhhhhccc
Q 003753 670 -----LKLQ--SCIRRLVM------GLPE---AIFSQDLQDLSIINCSIKDLT-CIVYIPRLRFLFAKDCPSLEEIIASD 732 (798)
Q Consensus 670 -----~~~~--~~L~~L~l------~lp~---~~lp~~L~~L~L~~~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~ 732 (798)
.... .+|+.|.+ .++. ..+ ++|++|++++|.++.+| .+..+++|++|++++|. +..++...
T Consensus 243 i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~ 320 (606)
T 3t6q_A 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF-SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK-FENLCQIS 320 (606)
T ss_dssp CCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTC-TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCC-CSBGGGGC
T ss_pred cChhHhchhhcCceeEEEeecCccCccCHHHhccc-cCCCEEeccCCccCCCChhhcccccCCEEECccCC-cCcCchhh
Confidence 0000 03444444 2222 345 67888888888776665 46777888888887754 33321100
Q ss_pred c----------------ccCCCCcccccccccceeecCCccchhhc---ccCCCCCCCcceeeeccC
Q 003753 733 L----------------RFEPSEENLSMFLHLRQAYFFKLPNLKNI---CHKAMAFPSLERIYVHGC 780 (798)
Q Consensus 733 ~----------------~~~~~~~~~~~~~~L~~L~L~~~~~l~~i---~~~~~~~~~L~~L~l~~c 780 (798)
+ .+......+..+++|+.|+++++ .+..+ +.....+++|+.|++++|
T Consensus 321 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSC
T ss_pred hhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCC
Confidence 0 00001123455666777777664 33333 334556777777777664
No 34
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=1.3e-20 Score=218.53 Aligned_cols=270 Identities=10% Similarity=0.104 Sum_probs=203.2
Q ss_pred hceeeEEeecCCCCCCCCC--CCCCCCcceeeeecccccc-cccHHHHhcCCceeEEeCCCCcccccccccccCCCC-CC
Q 003753 492 KEAVRVSLWRSPSIDSLSP--TPPCSPRLLTLLVRYTMIK-EFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELID-LQ 567 (798)
Q Consensus 492 ~~l~~lsl~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~-~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~-L~ 567 (798)
++++.|.+.+| .+..+|. .+..+++|++|++++|.+. .+| .|+.+++|++|++++| .++.+|..++.+++ |+
T Consensus 305 ~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~ 380 (636)
T 4eco_A 305 EKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVE 380 (636)
T ss_dssp GTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSS-EEEECCTTSEEECTTCC
T ss_pred CCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCC-ccccccHhhhhhcccCc
Confidence 68899999998 8888886 6788999999999999888 888 3888999999999999 88888988999998 99
Q ss_pred EEEcCCCCCcccCccccCCC--cccEEeCCCCCCcccccchhhc-------CCCCCccccccCCCCCCccCCCCCCCccc
Q 003753 568 YLNLSNTNICELPIGIKSCT--HLRTLLLDGTENLKAIPVGMLS-------SLLSLRVFSWVPTRYAGFNYGSSVPGVTV 638 (798)
Q Consensus 568 ~L~Ls~~~i~~lp~~i~~l~--~L~~L~l~~~~~l~~lp~~~i~-------~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 638 (798)
+|++++|.+..+|..+..+. +|++|++++|.....+|.. +. .+++|++|++++|.+. .
T Consensus 381 ~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~------------~ 447 (636)
T 4eco_A 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQIS------------K 447 (636)
T ss_dssp EEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCCC------------S
T ss_pred EEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCccC------------c
Confidence 99999998888888777655 8999999998744445544 66 7788999999988765 2
Q ss_pred ccHHHhccCCCCCeeEEEEecccchhhhhhh-----hhhcccceeeee------ccCc--h--hhhccCceEEeeccCCC
Q 003753 639 LLLEELESLKHLQEISVIILTIDSLNKLKSS-----LKLQSCIRRLVM------GLPE--A--IFSQDLQDLSIINCSIK 703 (798)
Q Consensus 639 ~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~-----~~~~~~L~~L~l------~lp~--~--~lp~~L~~L~L~~~~l~ 703 (798)
.....+..+++|+.|+++.+....++..... ...+++|+.|++ .+|. . .+ ++|+.|+|++|.++
T Consensus 448 lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l-~~L~~L~Ls~N~l~ 526 (636)
T 4eco_A 448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL-PYLVGIDLSYNSFS 526 (636)
T ss_dssp CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTC-TTCCEEECCSSCCS
T ss_pred CCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccC-CCcCEEECCCCCCC
Confidence 2233455688999999987765543322111 111237888887 4554 2 67 89999999999888
Q ss_pred CCC-cccCCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccCCC
Q 003753 704 DLT-CIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCPS 782 (798)
Q Consensus 704 ~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~~ 782 (798)
.+| .+..+++|+.|+|++|..+.. .......+..+..+++|+.|+|++| .++.+|.... ++|+.|++++|+
T Consensus 527 ~ip~~~~~l~~L~~L~Ls~N~~ls~----N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~- 598 (636)
T 4eco_A 527 KFPTQPLNSSTLKGFGIRNQRDAQG----NRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKIT--PNISVLDIKDNP- 598 (636)
T ss_dssp SCCCGGGGCSSCCEEECCSCBCTTC----CBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC--TTCCEEECCSCT-
T ss_pred CcChhhhcCCCCCEEECCCCccccc----CcccccChHHHhcCCCCCEEECCCC-cCCccCHhHh--CcCCEEECcCCC-
Confidence 776 588999999999976431110 0001123457788999999999995 5588887643 899999999985
Q ss_pred CCCCC
Q 003753 783 LRKLP 787 (798)
Q Consensus 783 L~~lp 787 (798)
+..++
T Consensus 599 l~~~~ 603 (636)
T 4eco_A 599 NISID 603 (636)
T ss_dssp TCEEE
T ss_pred Ccccc
Confidence 44444
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=3.7e-20 Score=210.26 Aligned_cols=128 Identities=13% Similarity=0.142 Sum_probs=88.4
Q ss_pred ccCCCCCeeEEEEecccchhhhhhhhhhcccceeeee---cc---Cc-----hhhhccCceEEeeccCCCC-CC--cccC
Q 003753 645 ESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM---GL---PE-----AIFSQDLQDLSIINCSIKD-LT--CIVY 710 (798)
Q Consensus 645 ~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l---~l---p~-----~~lp~~L~~L~L~~~~l~~-l~--~l~~ 710 (798)
..+++|+.|+++.+.... ..+.....+++|+.|.+ .+ |. ..+ ++|++|++++|.++. +| .+..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l-~~L~~L~Ls~N~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTD--TVFENCGHLTELETLILQMNQLKELSKIAEMTTQM-KSLQQLDISQNSVSYDEKKGDCSW 397 (520)
T ss_dssp SSCCCCCEEECCSSCCCT--TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTC-TTCCEEECCSSCCBCCGGGCSCCC
T ss_pred hhCCcccEEEeECCccCh--hhhhhhccCCCCCEEEccCCccCccccchHHHhhC-CCCCEEECCCCcCCcccccchhcc
Confidence 577889999887665443 12233344568888887 12 21 456 789999999998776 65 3678
Q ss_pred CCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccCCCCCCCCCC
Q 003753 711 IPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCPSLRKLPLS 789 (798)
Q Consensus 711 l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~lp~~ 789 (798)
+++|+.|++++|.....++. .+ .++|+.|+|++| .+..++.....+++|+.|++++| +++.+|..
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~----------~l--~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 462 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFR----------CL--PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDG 462 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGG----------SC--CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTT
T ss_pred CccCCEEECcCCCCCcchhh----------hh--cccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHH
Confidence 89999999998764333321 11 168888888884 66677776667888888888876 67777764
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=4.5e-20 Score=212.22 Aligned_cols=144 Identities=19% Similarity=0.137 Sum_probs=105.8
Q ss_pred ecCCcccchhhhhchhceeeEEeecCCCCCCCCC-CCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccc
Q 003753 477 QETDKSIKEQETASWKEAVRVSLWRSPSIDSLSP-TPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSK 555 (798)
Q Consensus 477 ~~~~~~~~~~~~~~~~~l~~lsl~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~ 555 (798)
+.+.+...+|.. ..+.+++|++++| .+..++. .+..+++|++|++++|.+..+++..|.++++|++|+|++| .++.
T Consensus 14 c~~~~l~~ip~~-l~~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~ 90 (570)
T 2z63_A 14 CMELNFYKIPDN-LPFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQS 90 (570)
T ss_dssp CCSSCCSSCCSS-SCSSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCE
T ss_pred eCCCCccccCCC-ccccccEEEccCC-ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCc
Confidence 334445555542 2357888888888 7777653 4577888888888888888887777888888888888888 7777
Q ss_pred cc-ccccCCCCCCEEEcCCCCCcccCc-cccCCCcccEEeCCCCCCccc--ccchhhcCCCCCccccccCCCCC
Q 003753 556 LH-VGEGELIDLQYLNLSNTNICELPI-GIKSCTHLRTLLLDGTENLKA--IPVGMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 556 lp-~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~ 625 (798)
+| ..++.+++|++|++++|.+..+|. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+.
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCCccc
Confidence 64 567888888888888888877764 57788888888888876 554 5665 778888888888777654
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=5.7e-20 Score=210.67 Aligned_cols=288 Identities=15% Similarity=0.144 Sum_probs=202.3
Q ss_pred EEecCCcccchhhhhchhceeeEEeecCCCCCCCC-CCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccc
Q 003753 475 VFQETDKSIKEQETASWKEAVRVSLWRSPSIDSLS-PTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKL 553 (798)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~l~~lsl~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i 553 (798)
+...+.....+|... +++++.|++++| .+..++ ..+..+++|++|++++|.+..+++..|.++++|++|+|++| .+
T Consensus 36 l~ls~~~L~~ip~~~-~~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l 112 (562)
T 3a79_B 36 VDYSNRNLTHVPKDL-PPRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RL 112 (562)
T ss_dssp EECTTSCCCSCCTTS-CTTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CC
T ss_pred EEcCCCCCccCCCCC-CCCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cC
Confidence 333444555555432 368999999999 888887 35788999999999999999987777999999999999999 89
Q ss_pred ccccccccCCCCCCEEEcCCCCCcccC--ccccCCCcccEEeCCCCCCcccccchhhcCCCCC--ccccccCCCC--CCc
Q 003753 554 SKLHVGEGELIDLQYLNLSNTNICELP--IGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSL--RVFSWVPTRY--AGF 627 (798)
Q Consensus 554 ~~lp~~i~~L~~L~~L~Ls~~~i~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L--~~L~l~~~~~--~~~ 627 (798)
+.+|.. .+++|++|++++|.+..+| ..++++++|++|++++|. +...+ +..+++| ++|++++|.+ ...
T Consensus 113 ~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 113 QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp CEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSCCCCSS
T ss_pred CccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeeccccccccc
Confidence 999887 8999999999999998764 689999999999999886 54322 3444444 6666655544 100
Q ss_pred c------CC-----------------------------------------------------------------------
Q 003753 628 N------YG----------------------------------------------------------------------- 630 (798)
Q Consensus 628 ~------~~----------------------------------------------------------------------- 630 (798)
. ..
T Consensus 187 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 266 (562)
T 3a79_B 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266 (562)
T ss_dssp SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHH
T ss_pred CcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHH
Confidence 0 00
Q ss_pred -----------------------CCCCCcc------------------------cccHHHh-------------------
Q 003753 631 -----------------------SSVPGVT------------------------VLLLEEL------------------- 644 (798)
Q Consensus 631 -----------------------~~~~~~~------------------------~~~~~~L------------------- 644 (798)
-.++..- ...+..+
T Consensus 267 ~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~ 346 (562)
T 3a79_B 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346 (562)
T ss_dssp HHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccc
Confidence 0000000 0001111
Q ss_pred ---ccCCCCCeeEEEEecccchhhhhhhhhhcccceeeee------ccCc-----hhhhccCceEEeeccCCCC-CC--c
Q 003753 645 ---ESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM------GLPE-----AIFSQDLQDLSIINCSIKD-LT--C 707 (798)
Q Consensus 645 ---~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~lp~-----~~lp~~L~~L~L~~~~l~~-l~--~ 707 (798)
..+++|+.|+++.+.... ..+.....+++|+.|.+ .+|. ..+ ++|+.|++++|.++. +| .
T Consensus 347 ~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~ 423 (562)
T 3a79_B 347 VCPPSPSSFTFLNFTQNVFTD--SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM-SSLETLDVSLNSLNSHAYDRT 423 (562)
T ss_dssp CCCSSCCCCCEEECCSSCCCT--TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTC-TTCCEEECTTSCCBSCCSSCC
T ss_pred cCccCCCCceEEECCCCcccc--chhhhhcccCCCCEEECCCCCcCCcccchhhhcCC-CCCCEEECCCCcCCCccChhh
Confidence 677899999997665443 22333344568888888 2332 456 789999999998776 55 3
Q ss_pred ccCCCCccEEEeecCCchhhhhccccccCCCCcccccc-cccceeecCCccchhhcccCCCCCCCcceeeeccCCCCCCC
Q 003753 708 IVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMF-LHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCPSLRKL 786 (798)
Q Consensus 708 l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l 786 (798)
+..+++|+.|++++|.....++ ..+ ++|+.|+|+++ .++.++.....+++|+.|++++| +|+.+
T Consensus 424 ~~~l~~L~~L~l~~n~l~~~~~-------------~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l 488 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTGSVF-------------RCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSV 488 (562)
T ss_dssp CCCCTTCCEEECCSSCCCGGGG-------------SSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCC
T ss_pred hcCcccCCEEECCCCCCCcchh-------------hhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCC
Confidence 7789999999999976433322 223 68888888884 77788877778888888888886 67777
Q ss_pred CCC
Q 003753 787 PLS 789 (798)
Q Consensus 787 p~~ 789 (798)
|..
T Consensus 489 ~~~ 491 (562)
T 3a79_B 489 PDG 491 (562)
T ss_dssp CTT
T ss_pred CHH
Confidence 765
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=1.3e-19 Score=207.56 Aligned_cols=126 Identities=21% Similarity=0.267 Sum_probs=112.6
Q ss_pred ceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccc-cccccCCCCCCEEEc
Q 003753 493 EAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKL-HVGEGELIDLQYLNL 571 (798)
Q Consensus 493 ~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~L 571 (798)
..+.+++.++ .+..+|..+. ++|++|++++|.+..+++..|.++++|++|+|++| .++.+ |..++++++|++|++
T Consensus 32 ~~~~l~ls~~-~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNR-NLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTS-CCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCC-CCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEEC
Confidence 3478999999 9999996554 89999999999999999877999999999999999 99988 678999999999999
Q ss_pred CCCCCcccCccccCCCcccEEeCCCCCCcccccc-hhhcCCCCCccccccCCCCC
Q 003753 572 SNTNICELPIGIKSCTHLRTLLLDGTENLKAIPV-GMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 572 s~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~ 625 (798)
++|.++.+|.. .+++|++|++++|. +..+|. ..++++++|++|++++|.+.
T Consensus 108 s~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 108 SHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp TTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccc
Confidence 99999999977 89999999999998 777652 34999999999999998875
No 39
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=7.7e-20 Score=211.85 Aligned_cols=263 Identities=13% Similarity=0.119 Sum_probs=157.6
Q ss_pred chhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccc-cccc-cccCCCCCC
Q 003753 490 SWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLS-KLHV-GEGELIDLQ 567 (798)
Q Consensus 490 ~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~-~lp~-~i~~L~~L~ 567 (798)
..++++.+.+.+| .+..+|..+..+++|++|++++|.+..+++..+.++++|++|++++| .+. .+|. .+..+++|+
T Consensus 276 ~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 276 CFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN-TKRLELGTGCLENLENLR 353 (606)
T ss_dssp TCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC-SSCCBCCSSTTTTCTTCC
T ss_pred cccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC-CcccccchhhhhccCcCC
Confidence 3456777777777 77777766677777777777777777666555777777777777777 554 4543 366777777
Q ss_pred EEEcCCCCCccc---CccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHh
Q 003753 568 YLNLSNTNICEL---PIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL 644 (798)
Q Consensus 568 ~L~Ls~~~i~~l---p~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 644 (798)
+|++++|.+..+ |..+..+++|++|++++|. +..+++..+..+++|++|++++|.+.. ......+
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~ 421 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKV-----------KDAQSPF 421 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEEC-----------CTTCCTT
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCC-----------cccchhh
Confidence 777777766655 4566777777777777776 555544446777777777777766541 1111235
Q ss_pred ccCCCCCeeEEEEecccchhhhhhhhhhcccceeeee---cc-----Cc----hhhhccCceEEeeccCCCCCC--cccC
Q 003753 645 ESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM---GL-----PE----AIFSQDLQDLSIINCSIKDLT--CIVY 710 (798)
Q Consensus 645 ~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l---~l-----p~----~~lp~~L~~L~L~~~~l~~l~--~l~~ 710 (798)
.++++|+.|+++.+...... +.....+++|+.|++ .+ |. ..+ ++|+.|++++|.++.++ .+..
T Consensus 422 ~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~ 498 (606)
T 3t6q_A 422 QNLHLLKVLNLSHSLLDISS--EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL-GRLEILVLSFCDLSSIDQHAFTS 498 (606)
T ss_dssp TTCTTCCEEECTTCCCBTTC--TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC-TTCCEEECTTSCCCEECTTTTTT
T ss_pred hCcccCCEEECCCCccCCcC--HHHHhCCCCCCEEECCCCCCCccccccchhhccC-CCccEEECCCCccCccChhhhcc
Confidence 56677777777544432211 112223345666655 11 11 334 56777777777555442 4566
Q ss_pred CCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhccc-CCCCCCCcceeeeccCC
Q 003753 711 IPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICH-KAMAFPSLERIYVHGCP 781 (798)
Q Consensus 711 l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~-~~~~~~~L~~L~l~~c~ 781 (798)
+++|+.|+|++|.. ..+. +..+..+++| .|+|+++ .+..++. ....+++|+.|++++||
T Consensus 499 l~~L~~L~Ls~N~l-~~~~---------~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 499 LKMMNHVDLSHNRL-TSSS---------IEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CTTCCEEECCSSCC-CGGG---------GGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred ccCCCEEECCCCcc-CcCC---------hhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCC
Confidence 67777777776543 2221 1345556666 6777664 3333332 23456677777776654
No 40
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=7.3e-20 Score=204.19 Aligned_cols=132 Identities=18% Similarity=0.203 Sum_probs=101.3
Q ss_pred hhchhceeeEEeecCCCCC-CCC-CCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccc-cccc--ccC
Q 003753 488 TASWKEAVRVSLWRSPSID-SLS-PTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSK-LHVG--EGE 562 (798)
Q Consensus 488 ~~~~~~l~~lsl~~~~~~~-~l~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~-lp~~--i~~ 562 (798)
....++++.|.+.+| .+. .++ ..+..+++|++|++++|.+..+++..|+++++|++|++++| .++. +|.. ++.
T Consensus 50 ~~~l~~L~~L~L~~n-~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~ 127 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQ-TPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC-NLDGAVLSGNFFKP 127 (455)
T ss_dssp TSSCTTCCEEECCCC-STTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS-CCBTHHHHSSTTTT
T ss_pred hccCccccEEECcCC-cccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC-CCCccccCcccccC
Confidence 345678999999998 664 553 35688999999999999998887666999999999999999 8875 4444 889
Q ss_pred CCCCCEEEcCCCCCccc-Ccc-ccCCCcccEEeCCCCCCcccccchhhcCC--CCCccccccCC
Q 003753 563 LIDLQYLNLSNTNICEL-PIG-IKSCTHLRTLLLDGTENLKAIPVGMLSSL--LSLRVFSWVPT 622 (798)
Q Consensus 563 L~~L~~L~Ls~~~i~~l-p~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~L--~~L~~L~l~~~ 622 (798)
+++|++|++++|.+..+ |.. +.++++|++|++++|. +..++...+..+ .+|+.|++++|
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n 190 (455)
T 3v47_A 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSI 190 (455)
T ss_dssp CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTC
T ss_pred cccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccC
Confidence 99999999999999887 544 8899999999999997 655544335444 33444444433
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=2.3e-19 Score=191.09 Aligned_cols=272 Identities=14% Similarity=0.146 Sum_probs=192.5
Q ss_pred cccchhhhhchhceeeEEeecCCCCCCCCC-CCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccccc
Q 003753 481 KSIKEQETASWKEAVRVSLWRSPSIDSLSP-TPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVG 559 (798)
Q Consensus 481 ~~~~~~~~~~~~~l~~lsl~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~ 559 (798)
....+|.. .+++++.|.+.+| .+..+++ .+..+++|++|++++|.+..+++..|.++++|++|++++| .++.+|..
T Consensus 44 ~l~~ip~~-~~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~ 120 (332)
T 2ft3_A 44 GLKAVPKE-ISPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPN 120 (332)
T ss_dssp CCSSCCSC-CCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSS
T ss_pred CccccCCC-CCCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcc
Confidence 34444432 2468999999999 8888854 5789999999999999999997777999999999999999 99999987
Q ss_pred ccCCCCCCEEEcCCCCCcccCc-cccCCCcccEEeCCCCCCccc--ccchhhcCCCCCccccccCCCCCCccCCCCCCCc
Q 003753 560 EGELIDLQYLNLSNTNICELPI-GIKSCTHLRTLLLDGTENLKA--IPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGV 636 (798)
Q Consensus 560 i~~L~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 636 (798)
+. ++|++|++++|.+..+|. .+.++++|++|++++|. +.. ++...+..+ +|++|++++|.+....
T Consensus 121 ~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~-------- 188 (332)
T 2ft3_A 121 LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTGIP-------- 188 (332)
T ss_dssp CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC--------
T ss_pred cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCCccC--------
Confidence 76 899999999999999975 48899999999999997 543 333447777 9999999998775311
Q ss_pred ccccHHHhccCCCCCeeEEEEecccchhhhhhhhhhcccceeeee------ccCc---hhhhccCceEEeeccCCCCCC-
Q 003753 637 TVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM------GLPE---AIFSQDLQDLSIINCSIKDLT- 706 (798)
Q Consensus 637 ~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~lp~---~~lp~~L~~L~L~~~~l~~l~- 706 (798)
..+ .++|+.|+++.+....+.. .....+++|+.|.+ .++. ..+ ++|+.|++++|.++.+|
T Consensus 189 -----~~~--~~~L~~L~l~~n~i~~~~~--~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~lp~ 258 (332)
T 2ft3_A 189 -----KDL--PETLNELHLDHNKIQAIEL--EDLLRYSKLYRLGLGHNQIRMIENGSLSFL-PTLRELHLDNNKLSRVPA 258 (332)
T ss_dssp -----SSS--CSSCSCCBCCSSCCCCCCT--TSSTTCTTCSCCBCCSSCCCCCCTTGGGGC-TTCCEEECCSSCCCBCCT
T ss_pred -----ccc--cCCCCEEECCCCcCCccCH--HHhcCCCCCCEEECCCCcCCcCChhHhhCC-CCCCEEECCCCcCeecCh
Confidence 011 1456666665444332221 11222345666655 1222 345 89999999999888876
Q ss_pred cccCCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccch--hhcccCCCCCCCcceeeeccCC
Q 003753 707 CIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNL--KNICHKAMAFPSLERIYVHGCP 781 (798)
Q Consensus 707 ~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l--~~i~~~~~~~~~L~~L~l~~c~ 781 (798)
.+..+++|+.|++++| .++.+....+... .....+++|+.|++.+++.. ...+.....+++|+.|++++|.
T Consensus 259 ~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~---~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTN-NITKVGVNDFCPV---GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TGGGCTTCCEEECCSS-CCCBCCTTSSSCS---SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhhcCccCCEEECCCC-CCCccChhHcccc---ccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 5889999999999995 4565533222110 11123788999999997643 2233345567889999998875
No 42
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=216.19 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=124.2
Q ss_pred EEEEecCCcccchhhhhchhceeeEEeecCCCCCCC-CCCCCCCCcceeeeeccc-ccccccHHHHhcCCceeEEeCCCC
Q 003753 473 ILVFQETDKSIKEQETASWKEAVRVSLWRSPSIDSL-SPTPPCSPRLLTLLVRYT-MIKEFENKFFKSMYALRVLDSSQN 550 (798)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~l~~lsl~~~~~~~~l-~~~~~~~~~L~~L~l~~~-~~~~l~~~~~~~l~~Lr~L~L~~~ 550 (798)
..+.+.......+|. .+++++.|++++| .+..+ +..+.++++|++|++++| .+..+++..|.++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 344455666777776 5679999999999 88876 456799999999999999 566786777999999999999999
Q ss_pred cccccc-cccccCCCCCCEEEcCCCCCcc-cCcc--ccCCCcccEEeCCCCCCccccc-chhhcCCCCCccccccCCCCC
Q 003753 551 AKLSKL-HVGEGELIDLQYLNLSNTNICE-LPIG--IKSCTHLRTLLLDGTENLKAIP-VGMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 551 ~~i~~l-p~~i~~L~~L~~L~Ls~~~i~~-lp~~--i~~l~~L~~L~l~~~~~l~~lp-~~~i~~L~~L~~L~l~~~~~~ 625 (798)
.+..+ |..++++++|++|+|++|.+.. +|.. +.++++|++|++++|. +..++ ...++++++|++|++++|.+.
T Consensus 84 -~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 84 -KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp -CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred -cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCC
Confidence 88877 8899999999999999999875 4554 8999999999999998 66553 234899999999999998775
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=1.4e-19 Score=212.71 Aligned_cols=146 Identities=18% Similarity=0.156 Sum_probs=123.8
Q ss_pred EecCCcccchhhhhchhceeeEEeecCCCCCCCCCC-CCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccc
Q 003753 476 FQETDKSIKEQETASWKEAVRVSLWRSPSIDSLSPT-PPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLS 554 (798)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~l~~lsl~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~ 554 (798)
.+.+.....+|... .+++++|++++| .+..++.. +.++++|++|++++|.+..+++..|+++++|++|+|++| .++
T Consensus 10 ~cs~~~L~~ip~~~-~~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~ 86 (680)
T 1ziw_A 10 DCSHLKLTQVPDDL-PTNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELS 86 (680)
T ss_dssp ECCSSCCSSCCSCS-CTTCSEEECCSS-CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCC
T ss_pred ECCCCCcccccccc-CCCCcEEECCCC-CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccC
Confidence 33444555555432 368999999999 88888753 688999999999999999998888999999999999999 999
Q ss_pred cccc-cccCCCCCCEEEcCCCCCcccC-ccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCC
Q 003753 555 KLHV-GEGELIDLQYLNLSNTNICELP-IGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 555 ~lp~-~i~~L~~L~~L~Ls~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 625 (798)
.+|. .++++++|++|++++|.+..+| ..++++++|++|++++|. +..++.+.++++++|++|++++|.+.
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCccc
Confidence 9986 5999999999999999999886 579999999999999997 66666555889999999999998765
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=7.2e-20 Score=203.01 Aligned_cols=241 Identities=17% Similarity=0.243 Sum_probs=178.4
Q ss_pred eeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccc-ccccCCCCCCEEEcC
Q 003753 494 AVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLS 572 (798)
Q Consensus 494 l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~Ls 572 (798)
.+.+...+. .+..+|..+. ++++.|++++|.+..++...|.++++|++|+|++| .++.++ ..+.++++|++|+|+
T Consensus 45 ~~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRK-NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSC-CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCC-CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECC
Confidence 345666666 8888886554 78999999999999999888999999999999999 898875 679999999999999
Q ss_pred CCCCcccCc-cccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCC
Q 003753 573 NTNICELPI-GIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQ 651 (798)
Q Consensus 573 ~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 651 (798)
+|.++.+|. .+..+++|++|++++|. +..+|...+..+++|++|++++|... .......+.++++|+
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l-----------~~i~~~~~~~l~~L~ 188 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRL-----------SYISEGAFEGLSNLR 188 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTC-----------CEECTTTTTTCSSCC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCc-----------ceeCcchhhcccccC
Confidence 999999976 58999999999999998 88998877999999999999986544 233445678899999
Q ss_pred eeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCC--cccCCCCccEEEeecCCchhhhh
Q 003753 652 EISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLT--CIVYIPRLRFLFAKDCPSLEEII 729 (798)
Q Consensus 652 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~ 729 (798)
.|+++.+....++.+ . .+ ++|+.|+|++|.++.++ .+..+++|+.|+|++|. +..+.
T Consensus 189 ~L~L~~n~l~~~~~~----~---------------~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~ 247 (440)
T 3zyj_A 189 YLNLAMCNLREIPNL----T---------------PL-IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIE 247 (440)
T ss_dssp EEECTTSCCSSCCCC----T---------------TC-SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEEC
T ss_pred eecCCCCcCcccccc----C---------------CC-cccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEC
Confidence 999977765544321 1 12 56677777776555542 45666677777776643 33331
Q ss_pred ccccccCCCCcccccccccceeecCCccchhhcccC-CCCCCCcceeeeccCC
Q 003753 730 ASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHK-AMAFPSLERIYVHGCP 781 (798)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~-~~~~~~L~~L~l~~c~ 781 (798)
+..+..+++|+.|+|++ +.+..++.. ...+++|+.|+++++|
T Consensus 248 ---------~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 248 ---------RNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ---------TTSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ---------hhhhcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence 13455666677777766 345555443 3446666666666543
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=7.7e-20 Score=203.49 Aligned_cols=239 Identities=17% Similarity=0.220 Sum_probs=170.2
Q ss_pred eeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccc-ccccCCCCCCEEEcCC
Q 003753 495 VRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLSN 573 (798)
Q Consensus 495 ~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~Ls~ 573 (798)
+.+...+. .+..+|..+. ++|++|++++|.+..+++..|.++++|++|+|++| .++.++ ..+.++++|++|+|++
T Consensus 57 ~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 57 SKVVCTRR-GLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp CEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred cEEEECCC-CcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCC
Confidence 45566666 7888885544 68999999999999998878999999999999999 898874 7899999999999999
Q ss_pred CCCcccCcc-ccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCe
Q 003753 574 TNICELPIG-IKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQE 652 (798)
Q Consensus 574 ~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 652 (798)
|.+..+|.. +..+++|++|++++|. +..+|...+.++++|++|++++|... .......+.++++|+.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l-----------~~i~~~~~~~l~~L~~ 200 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKL-----------EYISEGAFEGLFNLKY 200 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTC-----------CEECTTTTTTCTTCCE
T ss_pred CcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCc-----------cccChhhccCCCCCCE
Confidence 999999764 8899999999999998 88999877999999999999986544 2334446788999999
Q ss_pred eEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCC--cccCCCCccEEEeecCCchhhhhc
Q 003753 653 ISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLT--CIVYIPRLRFLFAKDCPSLEEIIA 730 (798)
Q Consensus 653 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~~ 730 (798)
|+++.+....+..+ .. + ++|+.|+|++|.++.++ .+..+++|+.|+|++|. +..+.
T Consensus 201 L~L~~n~l~~~~~~----~~---------------l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~- 258 (452)
T 3zyi_A 201 LNLGMCNIKDMPNL----TP---------------L-VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIE- 258 (452)
T ss_dssp EECTTSCCSSCCCC----TT---------------C-TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEEC-
T ss_pred EECCCCcccccccc----cc---------------c-ccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-CceEC-
Confidence 99977765544321 11 2 45666666666554432 35555666666665532 22221
Q ss_pred cccccCCCCcccccccccceeecCCccchhhcccC-CCCCCCcceeeeccC
Q 003753 731 SDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHK-AMAFPSLERIYVHGC 780 (798)
Q Consensus 731 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~-~~~~~~L~~L~l~~c 780 (798)
+..+..+++|+.|+|+++ .+..++.. ...+++|+.|+++++
T Consensus 259 --------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 259 --------RNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp --------TTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSS
T ss_pred --------HHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCC
Confidence 123445556666666553 44444432 234555666655554
No 46
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.81 E-value=7.1e-20 Score=217.35 Aligned_cols=272 Identities=15% Similarity=0.104 Sum_probs=183.3
Q ss_pred hhceeeEEeecCCCCC-CCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccc-cccccccCCCCCCE
Q 003753 491 WKEAVRVSLWRSPSID-SLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLS-KLHVGEGELIDLQY 568 (798)
Q Consensus 491 ~~~l~~lsl~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~-~lp~~i~~L~~L~~ 568 (798)
.++++.+.+.+| .+. .+|..+..+++|++|++++|.+....+..|.++++|++|++++| .+. .+|..++.+++|++
T Consensus 393 ~~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 393 KNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLET 470 (768)
T ss_dssp TCCCCEEECCSS-EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCE
T ss_pred cCCccEEECCCC-ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC-cccCcCCHHHcCCCCceE
Confidence 346777777777 554 55656677788888888888776444444778888888888888 666 56777888888888
Q ss_pred EEcCCCCCc-ccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccC
Q 003753 569 LNLSNTNIC-ELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESL 647 (798)
Q Consensus 569 L~Ls~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l 647 (798)
|++++|.+. .+|..+.++++|++|++++|.....+|.. ++.+++|++|++++|.+. +..+..+.++
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~------------~~~p~~l~~l 537 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFS------------GNIPAELGDC 537 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCE------------EECCGGGGGC
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCccc------------CcCCHHHcCC
Confidence 888888776 56777888888888888888733366665 778888888888887764 4556678888
Q ss_pred CCCCeeEEEEeccc-chhhhhhhh-------------------------------------------hhcccceeeee--
Q 003753 648 KHLQEISVIILTID-SLNKLKSSL-------------------------------------------KLQSCIRRLVM-- 681 (798)
Q Consensus 648 ~~L~~L~l~~~~~~-~~~~l~~~~-------------------------------------------~~~~~L~~L~l-- 681 (798)
++|+.|+++.+... .++...... .....+..+.+
T Consensus 538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence 88888888765433 111110000 00000000000
Q ss_pred -----ccCc--hhhhccCceEEeeccCCCC-CC-cccCCCCccEEEeecCCchhhhhccccccCCCCcccccccccceee
Q 003753 682 -----GLPE--AIFSQDLQDLSIINCSIKD-LT-CIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAY 752 (798)
Q Consensus 682 -----~lp~--~~lp~~L~~L~L~~~~l~~-l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~ 752 (798)
.+|. ..+ ++|+.|+|++|+++. +| .++.+++|+.|+|++|.....+ +..++.+++|+.|+
T Consensus 618 ~~~~g~~~~~~~~l-~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i----------p~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 618 RVYGGHTSPTFDNN-GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI----------PDEVGDLRGLNILD 686 (768)
T ss_dssp CEEEEECCCSCSSS-BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC----------CGGGGGCTTCCEEE
T ss_pred ceecccCchhhhcc-ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC----------ChHHhCCCCCCEEE
Confidence 1111 335 678888998887663 33 5888888999999886554444 34777888888888
Q ss_pred cCCccchhhcccCCCCCCCcceeeeccCCCCCCCCC
Q 003753 753 FFKLPNLKNICHKAMAFPSLERIYVHGCPSLRKLPL 788 (798)
Q Consensus 753 L~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~lp~ 788 (798)
|+++.--..+|.....+++|++|++++|+--..+|.
T Consensus 687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred CCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 888665557777777888888888888743334553
No 47
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.81 E-value=1.3e-19 Score=215.19 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=93.1
Q ss_pred hchhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccc-ccccccCCCCCC
Q 003753 489 ASWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSK-LHVGEGELIDLQ 567 (798)
Q Consensus 489 ~~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~-lp~~i~~L~~L~ 567 (798)
...++++.|.+.+| .+....+.+..+++|++|++++|.+....+..|.++++|++|++++| .+.. +|.. .+++|+
T Consensus 197 ~~l~~L~~L~Ls~n-~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~--~l~~L~ 272 (768)
T 3rgz_A 197 SRCVNLEFLDVSSN-NFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN-QFVGPIPPL--PLKSLQ 272 (768)
T ss_dssp TTCTTCCEEECCSS-CCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSS-CCEESCCCC--CCTTCC
T ss_pred ccCCcCCEEECcCC-cCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCC-cccCccCcc--ccCCCC
Confidence 45668899999988 66654435888999999999999888655555888999999999988 6653 3432 667777
Q ss_pred EEEcCCCCCc-ccCccccCC-CcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCC
Q 003753 568 YLNLSNTNIC-ELPIGIKSC-THLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 568 ~L~Ls~~~i~-~lp~~i~~l-~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 625 (798)
+|++++|.+. .+|..+..+ ++|++|++++|.....+|.. ++.+++|++|++++|.+.
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFS 331 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEE
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCccc
Confidence 7777777665 566666554 67777777777622244544 667777777777766543
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=8.7e-20 Score=192.03 Aligned_cols=242 Identities=15% Similarity=0.152 Sum_probs=186.5
Q ss_pred eEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccc---cccccCCCCCCEEEcC
Q 003753 496 RVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKL---HVGEGELIDLQYLNLS 572 (798)
Q Consensus 496 ~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~l---p~~i~~L~~L~~L~Ls 572 (798)
.+...++ .+..+|..+ .++|++|++++|.+..+|..+|.++++|++|++++| .++.+ |..+..+++|++|+++
T Consensus 11 ~l~c~~~-~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSK-GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSS-CCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCC-CcccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECC
Confidence 4666666 788888544 369999999999999999988999999999999999 88765 6677889999999999
Q ss_pred CCCCcccCccccCCCcccEEeCCCCCCcccccc-hhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCC
Q 003753 573 NTNICELPIGIKSCTHLRTLLLDGTENLKAIPV-GMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQ 651 (798)
Q Consensus 573 ~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 651 (798)
+|.+..+|..+..+++|++|++++|. +..++. ..+..+++|++|++++|.+. ......+.++++|+
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~L~ 153 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTR------------VAFNGIFNGLSSLE 153 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCE------------ECSTTTTTTCTTCC
T ss_pred CCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCC------------ccchhhcccCcCCC
Confidence 99999999999999999999999997 787775 44899999999999998764 33445577889999
Q ss_pred eeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCC--cccCCCCccEEEeecCCchhhhh
Q 003753 652 EISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLT--CIVYIPRLRFLFAKDCPSLEEII 729 (798)
Q Consensus 652 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~ 729 (798)
.|+++.+..... ..+... ..+ ++|++|++++|.++.++ .+..+++|++|+|++|. +..+.
T Consensus 154 ~L~l~~n~l~~~-~~~~~~---------------~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 215 (306)
T 2z66_A 154 VLKMAGNSFQEN-FLPDIF---------------TEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLD 215 (306)
T ss_dssp EEECTTCEEGGG-EECSCC---------------TTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCC
T ss_pred EEECCCCccccc-cchhHH---------------hhC-cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccC
Confidence 999976543320 011111 123 78889999888777653 57788899999998854 33332
Q ss_pred ccccccCCCCcccccccccceeecCCccchhhcccCCCCCC-CcceeeeccCC
Q 003753 730 ASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFP-SLERIYVHGCP 781 (798)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~-~L~~L~l~~c~ 781 (798)
...+..+++|+.|+|+++.-....+.....+| +|++|++++++
T Consensus 216 ---------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 216 ---------TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ---------SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ---------hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 12456788899999988644444444556664 88888888864
No 49
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=1.6e-19 Score=212.14 Aligned_cols=126 Identities=18% Similarity=0.188 Sum_probs=112.0
Q ss_pred eeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccc-cccccCCCCCCEEEcCC
Q 003753 495 VRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLSN 573 (798)
Q Consensus 495 ~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~Ls~ 573 (798)
+.++.+++ .+.++|..++ +++++|++++|.+..+++..|.++++|++|+|++| .++.+ |..++++++|++|++++
T Consensus 7 ~~~~cs~~-~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 7 EVADCSHL-KLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SEEECCSS-CCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCS
T ss_pred CeeECCCC-CccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCC
Confidence 34666667 7888886554 79999999999999999988999999999999999 88877 67789999999999999
Q ss_pred CCCcccCc-cccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCC
Q 003753 574 TNICELPI-GIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 574 ~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 625 (798)
|.+..+|. .++++++|++|++++|. +..+|+..++++++|++|++++|.+.
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~ 134 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLS 134 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCS
T ss_pred CccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCccc
Confidence 99999986 59999999999999997 88888666999999999999999775
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=6.9e-20 Score=193.09 Aligned_cols=228 Identities=16% Similarity=0.090 Sum_probs=185.2
Q ss_pred hhchhceeeEEeec-CCCCC-CCCCCCCCCCcceeeeecccccc-cccHHHHhcCCceeEEeCCCCcccc-cccccccCC
Q 003753 488 TASWKEAVRVSLWR-SPSID-SLSPTPPCSPRLLTLLVRYTMIK-EFENKFFKSMYALRVLDSSQNAKLS-KLHVGEGEL 563 (798)
Q Consensus 488 ~~~~~~l~~lsl~~-~~~~~-~l~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~l~~Lr~L~L~~~~~i~-~lp~~i~~L 563 (798)
...+++++.|++.+ + .+. .+|..+..+++|++|++++|.+. .+|.. |.++++|++|++++| .++ .+|..+..+
T Consensus 72 l~~l~~L~~L~L~~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l 148 (313)
T 1ogq_A 72 LANLPYLNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYN-ALSGTLPPSISSL 148 (313)
T ss_dssp GGGCTTCSEEEEEEET-TEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSS-EEESCCCGGGGGC
T ss_pred HhCCCCCCeeeCCCCC-cccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCEEeCCCC-ccCCcCChHHhcC
Confidence 44567899999994 6 454 67877899999999999999998 55554 999999999999999 888 789999999
Q ss_pred CCCCEEEcCCCCCc-ccCccccCCC-cccEEeCCCCCCcc-cccchhhcCCCCCccccccCCCCCCccCCCCCCCccccc
Q 003753 564 IDLQYLNLSNTNIC-ELPIGIKSCT-HLRTLLLDGTENLK-AIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLL 640 (798)
Q Consensus 564 ~~L~~L~Ls~~~i~-~lp~~i~~l~-~L~~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 640 (798)
++|++|++++|.+. .+|..+..++ +|++|++++|. +. .+|.. +..++ |++|++++|.+. ...
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~-~~~l~-L~~L~Ls~N~l~------------~~~ 213 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPT-FANLN-LAFVDLSRNMLE------------GDA 213 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGG-GGGCC-CSEEECCSSEEE------------ECC
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChH-HhCCc-ccEEECcCCccc------------CcC
Confidence 99999999999998 7899999998 99999999998 55 66765 88887 999999998775 345
Q ss_pred HHHhccCCCCCeeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCC-CCC-cccCCCCccEEE
Q 003753 641 LEELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIK-DLT-CIVYIPRLRFLF 718 (798)
Q Consensus 641 ~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~-~l~-~l~~l~~L~~L~ 718 (798)
...+..+++|+.|+++.+........ . ..+ ++|++|+|++|.++ .+| ++..+++|++|+
T Consensus 214 ~~~~~~l~~L~~L~L~~N~l~~~~~~---~---------------~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 274 (313)
T 1ogq_A 214 SVLFGSDKNTQKIHLAKNSLAFDLGK---V---------------GLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274 (313)
T ss_dssp GGGCCTTSCCSEEECCSSEECCBGGG---C---------------CCC-TTCCEEECCSSCCEECCCGGGGGCTTCCEEE
T ss_pred CHHHhcCCCCCEEECCCCceeeecCc---c---------------ccc-CCCCEEECcCCcccCcCChHHhcCcCCCEEE
Confidence 66788899999999987655322111 1 123 89999999999876 444 689999999999
Q ss_pred eecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcc
Q 003753 719 AKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNIC 763 (798)
Q Consensus 719 L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~ 763 (798)
|++|.....++ ....+++|+.|++.+++.+...|
T Consensus 275 Ls~N~l~~~ip-----------~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 275 VSFNNLCGEIP-----------QGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCSSEEEEECC-----------CSTTGGGSCGGGTCSSSEEESTT
T ss_pred CcCCcccccCC-----------CCccccccChHHhcCCCCccCCC
Confidence 99976543442 33789999999999987665443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=193.87 Aligned_cols=252 Identities=17% Similarity=0.148 Sum_probs=192.5
Q ss_pred EEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccc-cccccCCCCCCEEEcCCCC
Q 003753 497 VSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLSNTN 575 (798)
Q Consensus 497 lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~Ls~~~ 575 (798)
....++ .++.+|..+. ++|++|++++|.+..++...|.++++|++|++++| .++.+ |..++++++|++|++++|.
T Consensus 36 c~~~~~-~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 36 CKGSSG-SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EECCST-TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eeCCCC-Cccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc
Confidence 566677 8888986544 59999999999999999877999999999999999 89887 5679999999999999999
Q ss_pred CcccCcc-ccCCCcccEEeCCCCCCcccccc-hhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCee
Q 003753 576 ICELPIG-IKSCTHLRTLLLDGTENLKAIPV-GMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEI 653 (798)
Q Consensus 576 i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L 653 (798)
++.+|.. +.++++|++|++++|. +..+|. ..+..+++|++|++++|... .......+.++++|+.|
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~-----------~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTF-----------TKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSC-----------CEECTTTTTTCCEEEEE
T ss_pred CCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccc-----------cccCHHHccCCCCCCEE
Confidence 9999876 8999999999999997 888987 55899999999999998532 23344567889999999
Q ss_pred EEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCCc--ccCCCCccEEEeecCCchhhhhcc
Q 003753 654 SVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLTC--IVYIPRLRFLFAKDCPSLEEIIAS 731 (798)
Q Consensus 654 ~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~~--l~~l~~L~~L~L~~~~~l~~l~~~ 731 (798)
+++.+...... +... ..+ ++|++|++++|.+..++. +..+++|+.|++++|. +..+...
T Consensus 180 ~l~~n~l~~~~--~~~l---------------~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~ 240 (353)
T 2z80_A 180 EIDASDLQSYE--PKSL---------------KSI-QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD-LDTFHFS 240 (353)
T ss_dssp EEEETTCCEEC--TTTT---------------TTC-SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB-CTTCCCC
T ss_pred ECCCCCcCccC--HHHH---------------hcc-ccCCeecCCCCccccchhhhhhhcccccEEECCCCc-ccccccc
Confidence 99877654331 1111 123 789999999998877663 4568999999999964 4433210
Q ss_pred ccccCCCCcccccccccceeecCCcc----chhhcccCCCCCCCcceeeeccCCCCCCCCCCC
Q 003753 732 DLRFEPSEENLSMFLHLRQAYFFKLP----NLKNICHKAMAFPSLERIYVHGCPSLRKLPLSL 790 (798)
Q Consensus 732 ~~~~~~~~~~~~~~~~L~~L~L~~~~----~l~~i~~~~~~~~~L~~L~l~~c~~L~~lp~~~ 790 (798)
. .......+.++.++|+++. .+..++.....+++|+.|++++| +++.+|...
T Consensus 241 ~------l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~ 296 (353)
T 2z80_A 241 E------LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGI 296 (353)
T ss_dssp ------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTT
T ss_pred c------cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHH
Confidence 0 0122345566666666643 23355655667899999999987 688888653
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=3.7e-19 Score=204.56 Aligned_cols=124 Identities=23% Similarity=0.255 Sum_probs=96.2
Q ss_pred hhchhceeeEEeecCCCCCCCCC-CCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccc-cccCCCC
Q 003753 488 TASWKEAVRVSLWRSPSIDSLSP-TPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHV-GEGELID 565 (798)
Q Consensus 488 ~~~~~~l~~lsl~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~ 565 (798)
....++++.|++.+| .+..+++ .+.++++|++|++++|.+..+++..|.++++|++|++++| .++.+|. .++++++
T Consensus 48 ~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 48 FFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKT 125 (570)
T ss_dssp TTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTT
T ss_pred hhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCcccccccc
Confidence 345668888999888 7877753 4578889999999988888888777888899999999988 8888765 6888888
Q ss_pred CCEEEcCCCCCcc--cCccccCCCcccEEeCCCCCCcccccchhhcCCCCC
Q 003753 566 LQYLNLSNTNICE--LPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSL 614 (798)
Q Consensus 566 L~~L~Ls~~~i~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L 614 (798)
|++|++++|.+.. +|..++++++|++|++++|. +..++...++.+++|
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQM 175 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTC
T ss_pred ccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhcc
Confidence 9999998888875 68888888888888888886 555543334444444
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=5.6e-19 Score=187.92 Aligned_cols=262 Identities=15% Similarity=0.132 Sum_probs=188.0
Q ss_pred hhceeeEEeecCCCCCCCCC-CCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEE
Q 003753 491 WKEAVRVSLWRSPSIDSLSP-TPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYL 569 (798)
Q Consensus 491 ~~~l~~lsl~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L 569 (798)
.+.++.|.+.+| .+..++. .+..+++|++|++++|.+..+++..|.++++|++|++++| .++.+|..+. ++|++|
T Consensus 51 ~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L 126 (330)
T 1xku_A 51 PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQEL 126 (330)
T ss_dssp CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEE
T ss_pred CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEE
Confidence 358999999999 8988875 4689999999999999999986666999999999999999 8999988775 799999
Q ss_pred EcCCCCCcccCc-cccCCCcccEEeCCCCCCccc--ccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhcc
Q 003753 570 NLSNTNICELPI-GIKSCTHLRTLLLDGTENLKA--IPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELES 646 (798)
Q Consensus 570 ~Ls~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 646 (798)
++++|.+..++. .+.++++|++|++++|. +.. +....+..+++|++|++++|.+..... .+
T Consensus 127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-------------~~-- 190 (330)
T 1xku_A 127 RVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-------------GL-- 190 (330)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-------------SC--
T ss_pred ECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccCCc-------------cc--
Confidence 999999998865 57899999999999997 542 333348899999999999987753110 01
Q ss_pred CCCCCeeEEEEecccchhhhhhhhhhcccceeeee------ccCc---hhhhccCceEEeeccCCCCCC-cccCCCCccE
Q 003753 647 LKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM------GLPE---AIFSQDLQDLSIINCSIKDLT-CIVYIPRLRF 716 (798)
Q Consensus 647 l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~lp~---~~lp~~L~~L~L~~~~l~~l~-~l~~l~~L~~ 716 (798)
.++|+.|+++.+....+. +.....+++|+.|++ .++. ..+ ++|++|+|++|.++.+| ++..+++|++
T Consensus 191 ~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~lp~~l~~l~~L~~ 267 (330)
T 1xku_A 191 PPSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAVDNGSLANT-PHLRELHLNNNKLVKVPGGLADHKYIQV 267 (330)
T ss_dssp CTTCSEEECTTSCCCEEC--TGGGTTCTTCCEEECCSSCCCEECTTTGGGS-TTCCEEECCSSCCSSCCTTTTTCSSCCE
T ss_pred cccCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCceeChhhccCC-CCCCEEECCCCcCccCChhhccCCCcCE
Confidence 145666666544333221 112223345666665 1221 345 79999999999888876 5889999999
Q ss_pred EEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhc---ccCCCCCCCcceeeeccC
Q 003753 717 LFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNI---CHKAMAFPSLERIYVHGC 780 (798)
Q Consensus 717 L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i---~~~~~~~~~L~~L~l~~c 780 (798)
|++++| .++.+....+... .....++.|+.|++.+++ +..+ +.....+++|+.++++++
T Consensus 268 L~l~~N-~i~~~~~~~f~~~---~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 268 VYLHNN-NISAIGSNDFCPP---GYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp EECCSS-CCCCCCTTSSSCS---SCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred EECCCC-cCCccChhhcCCc---ccccccccccceEeecCc-ccccccCccccccccceeEEEeccc
Confidence 999985 4566543222111 112246889999999965 3332 233445678888888775
No 54
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=3.5e-19 Score=203.81 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=106.2
Q ss_pred EEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccc-ccccCCCCCCEEEcCCCC
Q 003753 497 VSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLSNTN 575 (798)
Q Consensus 497 lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~Ls~~~ 575 (798)
.+..++ .+.++|..+. ++|++|++++|.+..+++..|.++++|++|++++| .++.+| ..++.+++|++|++++|.
T Consensus 10 c~~~~~-~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 10 CDGRSR-SFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp EECTTS-CCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCC-ccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCc
Confidence 445566 7888986554 79999999999999987777999999999999999 898875 689999999999999999
Q ss_pred CcccCcc-ccCCCcccEEeCCCCCCccc--ccchhhcCCCCCccccccCCCC
Q 003753 576 ICELPIG-IKSCTHLRTLLLDGTENLKA--IPVGMLSSLLSLRVFSWVPTRY 624 (798)
Q Consensus 576 i~~lp~~-i~~l~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~ 624 (798)
+..+|.. ++++++|++|++++|. +.. +|.. ++++++|++|++++|..
T Consensus 86 l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~~l~~L~~L~L~~n~~ 135 (549)
T 2z81_A 86 LSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSL-FPNLTNLQTLRIGNVET 135 (549)
T ss_dssp CCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCS-CTTCTTCCEEEEEESSS
T ss_pred cCccCHHHhccCCCCcEEECCCCc-ccccchhhh-hhccCCccEEECCCCcc
Confidence 9999765 9999999999999997 764 3554 89999999999999874
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=4e-19 Score=202.83 Aligned_cols=229 Identities=21% Similarity=0.196 Sum_probs=150.6
Q ss_pred hceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEc
Q 003753 492 KEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNL 571 (798)
Q Consensus 492 ~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~L 571 (798)
++++.|.+.+| .+..+|. .+++|++|++++|.++.+|. .+++|++|++++| .++.+|. .+.+|++|++
T Consensus 61 ~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CCCCCCC---CCTTCCEEEC
T ss_pred CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cCCCCCC---CCCCcCEEEC
Confidence 46666666666 6666663 45666666666666666654 4566666666666 6666655 4556666666
Q ss_pred CCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCC
Q 003753 572 SNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQ 651 (798)
Q Consensus 572 s~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 651 (798)
++|+++.+|.. +++|++|++++|. +..+|. .+++|+.|++++|.+.. +. ..+++|+
T Consensus 129 ~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~~--------------l~--~~~~~L~ 184 (622)
T 3g06_A 129 FGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLTS--------------LP--MLPSGLQ 184 (622)
T ss_dssp CSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSC--------------CC--CCCTTCC
T ss_pred CCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCCC--------------Cc--ccCCCCc
Confidence 66666666643 3566666666665 555553 23456666666665441 11 3457788
Q ss_pred eeEEEEecccchhhhhhhhhhcccceeeee------ccCchhhhccCceEEeeccCCCCCCcccCCCCccEEEeecCCch
Q 003753 652 EISVIILTIDSLNKLKSSLKLQSCIRRLVM------GLPEAIFSQDLQDLSIINCSIKDLTCIVYIPRLRFLFAKDCPSL 725 (798)
Q Consensus 652 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~lp~~~lp~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~l 725 (798)
.|+++.+....++.. .++|+.|.+ .+| ..+ ++|+.|++++|.++.+| ..+++|+.|+|++| .+
T Consensus 185 ~L~Ls~N~l~~l~~~------~~~L~~L~L~~N~l~~l~-~~~-~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N-~L 253 (622)
T 3g06_A 185 ELSVSDNQLASLPTL------PSELYKLWAYNNRLTSLP-ALP-SGLKELIVSGNRLTSLP--VLPSELKELMVSGN-RL 253 (622)
T ss_dssp EEECCSSCCSCCCCC------CTTCCEEECCSSCCSSCC-CCC-TTCCEEECCSSCCSCCC--CCCTTCCEEECCSS-CC
T ss_pred EEECCCCCCCCCCCc------cchhhEEECcCCcccccC-CCC-CCCCEEEccCCccCcCC--CCCCcCcEEECCCC-CC
Confidence 888876655543322 246777766 233 223 78999999999888777 56788999999885 45
Q ss_pred hhhhccccccCCCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccCC
Q 003753 726 EEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCP 781 (798)
Q Consensus 726 ~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~ 781 (798)
+.++ . .+++|+.|+|++| .+..+|.....+++|+.|++++|+
T Consensus 254 ~~lp----------~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 254 TSLP----------M---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp SCCC----------C---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CcCC----------c---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 5441 1 5788999999985 677888777888999999998875
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=5.5e-19 Score=183.81 Aligned_cols=218 Identities=17% Similarity=0.190 Sum_probs=169.1
Q ss_pred eeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccc-cccccCCCCCCEEEcCC
Q 003753 495 VRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLSN 573 (798)
Q Consensus 495 ~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~Ls~ 573 (798)
+.++..++ .+..+|..+ .++|++|++++|.+..++...|..+++|++|++++| .++.+ |..+..+++|++|++++
T Consensus 14 ~~~~c~~~-~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQ-GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSS-CCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcC-CcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCC
Confidence 45666666 788887433 468999999999999998877899999999999999 88877 77899999999999999
Q ss_pred CC-Cccc-CccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCC
Q 003753 574 TN-ICEL-PIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQ 651 (798)
Q Consensus 574 ~~-i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 651 (798)
|. +..+ |..+..+++|++|++++|. +..++...+..+++|++|++++|.+. ......+..+++|+
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~L~ 156 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQ------------ALPDDTFRDLGNLT 156 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCC------------CCCTTTTTTCTTCC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCccc------------ccCHhHhccCCCcc
Confidence 96 8888 6788999999999999997 77776666889999999999998765 22334467788888
Q ss_pred eeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCC--CcccCCCCccEEEeecCCchhhhh
Q 003753 652 EISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDL--TCIVYIPRLRFLFAKDCPSLEEII 729 (798)
Q Consensus 652 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l--~~l~~l~~L~~L~L~~~~~l~~l~ 729 (798)
.|+++.+....+.... . ..+ ++|+.|++++|.++.+ ..+..+++|+.|++++|. +..++
T Consensus 157 ~L~l~~n~l~~~~~~~--~---------------~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~ 217 (285)
T 1ozn_A 157 HLFLHGNRISSVPERA--F---------------RGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALP 217 (285)
T ss_dssp EEECCSSCCCEECTTT--T---------------TTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCC
T ss_pred EEECCCCcccccCHHH--h---------------cCc-cccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCC
Confidence 8888766544332210 1 123 7899999999977765 357889999999999864 44432
Q ss_pred ccccccCCCCcccccccccceeecCCcc
Q 003753 730 ASDLRFEPSEENLSMFLHLRQAYFFKLP 757 (798)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 757 (798)
. ..+..+++|+.|+|++++
T Consensus 218 ~---------~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 218 T---------EALAPLRALQYLRLNDNP 236 (285)
T ss_dssp H---------HHHTTCTTCCEEECCSSC
T ss_pred H---------HHcccCcccCEEeccCCC
Confidence 1 246678999999999864
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=2.3e-20 Score=196.73 Aligned_cols=243 Identities=14% Similarity=0.103 Sum_probs=187.1
Q ss_pred hceeeEEeecCCCCCCCCCCCCCCCcceeeeeccccccc--ccHHHHh-------cCCceeEEeCCCCcccc-cccccc-
Q 003753 492 KEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKE--FENKFFK-------SMYALRVLDSSQNAKLS-KLHVGE- 560 (798)
Q Consensus 492 ~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--l~~~~~~-------~l~~Lr~L~L~~~~~i~-~lp~~i- 560 (798)
++++.+.+.+| .+ .+|..+... |+.|++++|.+.. +|.. +. ++++|++|+|++| .++ .+|..+
T Consensus 43 ~~L~~l~l~~n-~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 116 (312)
T 1wwl_A 43 RSLEYLLKRVD-TE-ADLGQFTDI--IKSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENL-EVTGTAPPPLL 116 (312)
T ss_dssp EECTTHHHHCC-TT-CCCHHHHHH--HHHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCSS
T ss_pred CCceeEeeccc-cc-ccHHHHHHH--HhhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCC-cccchhHHHHH
Confidence 35677777777 66 666434333 9999999998754 5554 33 6999999999999 887 678876
Q ss_pred -cCCCCCCEEEcCCCCCcccCccccCC-----CcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCC
Q 003753 561 -GELIDLQYLNLSNTNICELPIGIKSC-----THLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVP 634 (798)
Q Consensus 561 -~~L~~L~~L~Ls~~~i~~lp~~i~~l-----~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 634 (798)
+.+++|++|++++|.+..+|..+..+ ++|++|++++|. +..++...++.+++|++|++++|.+.+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------- 187 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELG-------- 187 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCH--------
T ss_pred HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCc--------
Confidence 89999999999999999888888877 999999999998 888886569999999999999987641
Q ss_pred CcccccHHHh--ccCCCCCeeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCC---Cccc
Q 003753 635 GVTVLLLEEL--ESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDL---TCIV 709 (798)
Q Consensus 635 ~~~~~~~~~L--~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l---~~l~ 709 (798)
....+..+ ..+++|+.|+++.+....+..+..... ..+ ++|+.|++++|.++.. +.+.
T Consensus 188 --~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~--------------~~l-~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 188 --ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA--------------AAR-VQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp --HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH--------------HTT-CCCSEEECTTSCCCSSCCCSCCC
T ss_pred --chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH--------------hcC-CCCCEEECCCCcCCcccchhhhh
Confidence 11123455 789999999998776665544433211 123 7999999999987764 3466
Q ss_pred CCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccCC
Q 003753 710 YIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCP 781 (798)
Q Consensus 710 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~ 781 (798)
.+++|++|+|++|. ++.++. .+. ++|+.|+|++ +.++.++. ...+++|++|++++++
T Consensus 251 ~l~~L~~L~Ls~N~-l~~ip~----------~~~--~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 251 WPSQLNSLNLSFTG-LKQVPK----------GLP--AKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCTTCCEEECTTSC-CSSCCS----------SCC--SEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred hcCCCCEEECCCCc-cChhhh----------hcc--CCceEEECCC-CCCCCChh-HhhCCCCCEEeccCCC
Confidence 78999999999964 455532 222 8999999999 57787765 7789999999999864
No 58
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.79 E-value=3.2e-19 Score=206.64 Aligned_cols=262 Identities=16% Similarity=0.135 Sum_probs=164.5
Q ss_pred hhchhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCC
Q 003753 488 TASWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQ 567 (798)
Q Consensus 488 ~~~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~ 567 (798)
...+++++.+++.++ .+..+| .+..+++|++|++++|.+..+| . + .+++|++|++++|..+..+ .++.+++|+
T Consensus 281 ~~~l~~L~~L~l~~~-~~~~l~-~l~~~~~L~~L~l~~n~l~~lp-~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 353 (606)
T 3vq2_A 281 FHCLANVSAMSLAGV-SIKYLE-DVPKHFKWQSLSIIRCQLKQFP-T-L-DLPFLKSLTLTMNKGSISF--KKVALPSLS 353 (606)
T ss_dssp CGGGTTCSEEEEESC-CCCCCC-CCCTTCCCSEEEEESCCCSSCC-C-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCC
T ss_pred cccCCCCCEEEecCc-cchhhh-hccccccCCEEEcccccCcccc-c-C-CCCccceeeccCCcCccch--hhccCCCCC
Confidence 344556677777766 666666 6666677777777777666666 2 3 6666666666666322222 455666666
Q ss_pred EEEcCCCCCccc---CccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHh
Q 003753 568 YLNLSNTNICEL---PIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL 644 (798)
Q Consensus 568 ~L~Ls~~~i~~l---p~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 644 (798)
+|++++|.+..+ |..+..+++|++|++++|. +..+|.. +..+++|++|++++|.+.. ......+
T Consensus 354 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~-~~~l~~L~~L~l~~n~l~~-----------~~~~~~~ 420 (606)
T 3vq2_A 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSAN-FMGLEELQHLDFQHSTLKR-----------VTEFSAF 420 (606)
T ss_dssp EEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCC-CTTCTTCCEEECTTSEEES-----------TTTTTTT
T ss_pred EEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhh-ccCCCCCCeeECCCCccCC-----------ccChhhh
Confidence 666666665544 5556666666666666665 5556643 6666666666666665431 1111345
Q ss_pred ccCCCCCeeEEEEecccchhhhhhhhhhcccceeeee------c--cCc--hhhhccCceEEeeccCCCCCC--cccCCC
Q 003753 645 ESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM------G--LPE--AIFSQDLQDLSIINCSIKDLT--CIVYIP 712 (798)
Q Consensus 645 ~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~--lp~--~~lp~~L~~L~L~~~~l~~l~--~l~~l~ 712 (798)
.++++|+.|+++.+..... .+.....+++|+.|.+ . +|. ..+ ++|+.|++++|.++.++ ++..++
T Consensus 421 ~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKID--FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT-TNLTFLDLSKCQLEQISWGVFDTLH 497 (606)
T ss_dssp TTCTTCCEEECTTSCCEEC--CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hccccCCEEECcCCCCCcc--chhhhcCCCCCCEEECCCCcCCCcchHHhhccC-CCCCEEECCCCcCCccChhhhcccc
Confidence 5556666666644332221 1112222335555555 1 222 445 88999999999777653 478899
Q ss_pred CccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcccCCCCCC-CcceeeeccCCCC
Q 003753 713 RLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFP-SLERIYVHGCPSL 783 (798)
Q Consensus 713 ~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~-~L~~L~l~~c~~L 783 (798)
+|++|+|++|.. ..++ +..+..+++|+.|+|++| .+..++.....+| +|++|+++++|-.
T Consensus 498 ~L~~L~Ls~N~l-~~~~---------~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 498 RLQLLNMSHNNL-LFLD---------SSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp TCCEEECCSSCC-SCEE---------GGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred cCCEEECCCCcC-CCcC---------HHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCcc
Confidence 999999999753 3332 246778899999999995 5788888777787 5999999887643
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=2.2e-19 Score=189.78 Aligned_cols=242 Identities=13% Similarity=0.091 Sum_probs=170.8
Q ss_pred hhceeeEEeecCCCCCCCC-CCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEE
Q 003753 491 WKEAVRVSLWRSPSIDSLS-PTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYL 569 (798)
Q Consensus 491 ~~~l~~lsl~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L 569 (798)
.++++.|++.+| .+..++ ..+..+++|++|++++|.+..+++ |..+++|++|++++| .++.+|. +++|++|
T Consensus 33 ~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~~----~~~L~~L 104 (317)
T 3o53_A 33 AWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETL 104 (317)
T ss_dssp GGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEEE----CTTCCEE
T ss_pred CCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-ccccccC----CCCcCEE
Confidence 347888888888 777665 245778888888888887776665 778888888888888 7776653 3778888
Q ss_pred EcCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHh-ccCC
Q 003753 570 NLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEEL-ESLK 648 (798)
Q Consensus 570 ~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L-~~l~ 648 (798)
++++|.+..++.. .+++|++|++++|. +..++...++.+++|++|++++|.+. ......+ ..++
T Consensus 105 ~l~~n~l~~~~~~--~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~~l~ 169 (317)
T 3o53_A 105 HAANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID------------TVNFAELAASSD 169 (317)
T ss_dssp ECCSSCCSEEEEC--CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCC------------EEEGGGGGGGTT
T ss_pred ECCCCccCCcCcc--ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCC------------cccHHHHhhccC
Confidence 8888888777533 36778888888886 77776555777888888888887765 2233344 4677
Q ss_pred CCCeeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCC-cccCCCCccEEEeecCCchhh
Q 003753 649 HLQEISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLT-CIVYIPRLRFLFAKDCPSLEE 727 (798)
Q Consensus 649 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~-~l~~l~~L~~L~L~~~~~l~~ 727 (798)
+|+.|+++.+....+.... .+ ++|+.|++++|.++.++ .+..+++|+.|+|++| .+..
T Consensus 170 ~L~~L~L~~N~l~~~~~~~-------------------~l-~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~ 228 (317)
T 3o53_A 170 TLEHLNLQYNFIYDVKGQV-------------------VF-AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVL 228 (317)
T ss_dssp TCCEEECTTSCCCEEECCC-------------------CC-TTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCE
T ss_pred cCCEEECCCCcCccccccc-------------------cc-ccCCEEECCCCcCCcchhhhcccCcccEEECcCC-cccc
Confidence 8888887655544332111 12 78899999998777764 4778889999999885 4455
Q ss_pred hhccccccCCCCcccccccccceeecCCccch-hhcccCCCCCCCcceeeeccCCCCCCC
Q 003753 728 IIASDLRFEPSEENLSMFLHLRQAYFFKLPNL-KNICHKAMAFPSLERIYVHGCPSLRKL 786 (798)
Q Consensus 728 l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l-~~i~~~~~~~~~L~~L~l~~c~~L~~l 786 (798)
++ ..+..+++|+.|+|++++-. ..++.....+++|+.|++.+|+.++..
T Consensus 229 l~----------~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 229 IE----------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp EC----------TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred hh----------hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 42 35667889999999886544 345555566788888888866555544
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=3.5e-19 Score=185.26 Aligned_cols=213 Identities=17% Similarity=0.196 Sum_probs=174.5
Q ss_pred cCCcccchhhhhchhceeeEEeecCCCCCCCCC-CCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcc-ccc
Q 003753 478 ETDKSIKEQETASWKEAVRVSLWRSPSIDSLSP-TPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAK-LSK 555 (798)
Q Consensus 478 ~~~~~~~~~~~~~~~~l~~lsl~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~-i~~ 555 (798)
.+.+...+|. ...+++++|.+.++ .+..++. .+..+++|++|++++|.+..+++..|.++++|++|++++| . ++.
T Consensus 19 ~~~~l~~ip~-~~~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~l~~ 95 (285)
T 1ozn_A 19 PQQGLQAVPV-GIPAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN-AQLRS 95 (285)
T ss_dssp CSSCCSSCCT-TCCTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC-TTCCC
T ss_pred CcCCcccCCc-CCCCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC-CCccc
Confidence 3344444543 23568999999999 8888874 4689999999999999999997777999999999999999 6 888
Q ss_pred c-cccccCCCCCCEEEcCCCCCccc-CccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCC
Q 003753 556 L-HVGEGELIDLQYLNLSNTNICEL-PIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSV 633 (798)
Q Consensus 556 l-p~~i~~L~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 633 (798)
+ |..+..+++|++|++++|.+..+ |..+.++++|++|++++|. +..+|...++.+++|++|++++|.+.
T Consensus 96 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-------- 166 (285)
T 1ozn_A 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS-------- 166 (285)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC--------
T ss_pred cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccc--------
Confidence 8 77899999999999999999888 5678999999999999997 88888777899999999999999775
Q ss_pred CCcccccHHHhccCCCCCeeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCC--cccCC
Q 003753 634 PGVTVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLT--CIVYI 711 (798)
Q Consensus 634 ~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~--~l~~l 711 (798)
......+..+++|+.|+++.+...... +... ..+ ++|+.|++++|.++.++ .+..+
T Consensus 167 ----~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~---------------~~l-~~L~~L~l~~n~l~~~~~~~~~~l 224 (285)
T 1ozn_A 167 ----SVPERAFRGLHSLDRLLLHQNRVAHVH--PHAF---------------RDL-GRLMTLYLFANNLSALPTEALAPL 224 (285)
T ss_dssp ----EECTTTTTTCTTCCEEECCSSCCCEEC--TTTT---------------TTC-TTCCEEECCSSCCSCCCHHHHTTC
T ss_pred ----ccCHHHhcCccccCEEECCCCcccccC--HhHc---------------cCc-ccccEeeCCCCcCCcCCHHHcccC
Confidence 233345778899999999776544331 1111 123 79999999999888876 38899
Q ss_pred CCccEEEeecCCc
Q 003753 712 PRLRFLFAKDCPS 724 (798)
Q Consensus 712 ~~L~~L~L~~~~~ 724 (798)
++|+.|+|++|+.
T Consensus 225 ~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 225 RALQYLRLNDNPW 237 (285)
T ss_dssp TTCCEEECCSSCE
T ss_pred cccCEEeccCCCc
Confidence 9999999999764
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=1.4e-19 Score=202.54 Aligned_cols=233 Identities=13% Similarity=0.101 Sum_probs=144.6
Q ss_pred hceeeEEeecCCCCCCCC-CCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEE
Q 003753 492 KEAVRVSLWRSPSIDSLS-PTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLN 570 (798)
Q Consensus 492 ~~l~~lsl~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~ 570 (798)
++++.|++.+| .+..++ ..+..+++|++|++++|.+..+++ |..+++|++|+|++| .++.+|. .++|++|+
T Consensus 34 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLH 105 (487)
T ss_dssp GGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEE
T ss_pred CCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEEE
Confidence 36777777777 666654 245667777777777776665554 667777777777777 6666654 26677777
Q ss_pred cCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhc-cCCC
Q 003753 571 LSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELE-SLKH 649 (798)
Q Consensus 571 Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~-~l~~ 649 (798)
+++|.+..+|. ..+++|++|++++|. +..+++..++.+++|++|++++|.+. ...+..+. .+++
T Consensus 106 L~~N~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~------------~~~~~~l~~~l~~ 170 (487)
T 3oja_A 106 AANNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID------------TVNFAELAASSDT 170 (487)
T ss_dssp CCSSCCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCC------------EEEGGGGGGGTTT
T ss_pred CcCCcCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCC------------CcChHHHhhhCCc
Confidence 77777766653 245677777777776 55554433667777777777776654 22334443 5667
Q ss_pred CCeeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCC-cccCCCCccEEEeecCCchhhh
Q 003753 650 LQEISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLT-CIVYIPRLRFLFAKDCPSLEEI 728 (798)
Q Consensus 650 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l 728 (798)
|+.|+++.+....+... ..+ ++|+.|+|++|.++.+| .+..+++|+.|+|++|. +..+
T Consensus 171 L~~L~Ls~N~l~~~~~~-------------------~~l-~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~l 229 (487)
T 3oja_A 171 LEHLNLQYNFIYDVKGQ-------------------VVF-AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLI 229 (487)
T ss_dssp CCEEECTTSCCCEEECC-------------------CCC-TTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEE
T ss_pred ccEEecCCCcccccccc-------------------ccC-CCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-Cccc
Confidence 77777655543333111 112 67777777777666653 46677777777777743 3333
Q ss_pred hccccccCCCCcccccccccceeecCCccch-hhcccCCCCCCCcceeeec
Q 003753 729 IASDLRFEPSEENLSMFLHLRQAYFFKLPNL-KNICHKAMAFPSLERIYVH 778 (798)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l-~~i~~~~~~~~~L~~L~l~ 778 (798)
+ ..+..+++|+.|++++++-. ..++.....++.|+.|.+.
T Consensus 230 p----------~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 230 E----------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp C----------TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred c----------hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 2 24556777777777775544 2444444556666666664
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=9.1e-20 Score=192.69 Aligned_cols=244 Identities=12% Similarity=0.079 Sum_probs=192.3
Q ss_pred hhchhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCC
Q 003753 488 TASWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQ 567 (798)
Q Consensus 488 ~~~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~ 567 (798)
....++++.|.+.+| .+..++ .+..+++|++|++++|.+..++. +++|++|++++| .++.++.. .+++|+
T Consensus 54 ~~~l~~L~~L~Ls~n-~l~~~~-~~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~l~~n-~l~~~~~~--~~~~L~ 123 (317)
T 3o53_A 54 LAPFTKLELLNLSSN-VLYETL-DLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANN-NISRVSCS--RGQGKK 123 (317)
T ss_dssp HTTCTTCCEEECTTS-CCEEEE-EETTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSS-CCSEEEEC--CCSSCE
T ss_pred hhCCCcCCEEECCCC-cCCcch-hhhhcCCCCEEECcCCccccccC-----CCCcCEEECCCC-ccCCcCcc--ccCCCC
Confidence 456679999999999 887777 38899999999999999988774 489999999999 89988653 478999
Q ss_pred EEEcCCCCCcccC-ccccCCCcccEEeCCCCCCcccccchhh-cCCCCCccccccCCCCCCccCCCCCCCcccccHHHhc
Q 003753 568 YLNLSNTNICELP-IGIKSCTHLRTLLLDGTENLKAIPVGML-SSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELE 645 (798)
Q Consensus 568 ~L~Ls~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~i-~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 645 (798)
+|++++|.+..++ ..+..+++|++|++++|. +..++...+ ..+++|++|++++|.+.. +....
T Consensus 124 ~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~--------------~~~~~ 188 (317)
T 3o53_A 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYD--------------VKGQV 188 (317)
T ss_dssp EEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCE--------------EECCC
T ss_pred EEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCcc--------------ccccc
Confidence 9999999999884 478899999999999997 777654434 579999999999998752 12334
Q ss_pred cCCCCCeeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCC-cccCCCCccEEEeecCCc
Q 003753 646 SLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLT-CIVYIPRLRFLFAKDCPS 724 (798)
Q Consensus 646 ~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~-~l~~l~~L~~L~L~~~~~ 724 (798)
.+++|+.|+++.+....+.... ..+ ++|+.|++++|.++.+| .+..+++|+.|++++|+.
T Consensus 189 ~l~~L~~L~Ls~N~l~~l~~~~------------------~~l-~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLAFMGPEF------------------QSA-AGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp CCTTCCEEECCSSCCCEECGGG------------------GGG-TTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCC
T ss_pred ccccCCEEECCCCcCCcchhhh------------------ccc-CcccEEECcCCcccchhhHhhcCCCCCEEEccCCCc
Confidence 5889999999877665443221 123 89999999999888766 578899999999999776
Q ss_pred h-hhhhccccccCCCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccCCCCCC
Q 003753 725 L-EEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCPSLRK 785 (798)
Q Consensus 725 l-~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~ 785 (798)
. ..++ ..+..+++|+.|++.+++.++.........+.+....-..|..|..
T Consensus 250 ~~~~~~----------~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~~ 301 (317)
T 3o53_A 250 HCGTLR----------DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301 (317)
T ss_dssp BHHHHH----------HHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCTT
T ss_pred cCcCHH----------HHHhccccceEEECCCchhccCCchhccCCCceecccceeeccCCh
Confidence 5 2332 3667899999999998888887766555556666655566776653
No 63
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=4e-18 Score=198.60 Aligned_cols=145 Identities=19% Similarity=0.145 Sum_probs=123.7
Q ss_pred ecCCcccchhhhhchhceeeEEeecCCCCCCCCC-CCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccc
Q 003753 477 QETDKSIKEQETASWKEAVRVSLWRSPSIDSLSP-TPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSK 555 (798)
Q Consensus 477 ~~~~~~~~~~~~~~~~~l~~lsl~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~ 555 (798)
+.+.+...+|.. -+..+++|++++| .++.+++ .+.++++|++|+|++|.+..+++..|.++++|++|+|++| .++.
T Consensus 38 c~~~~l~~vP~~-lp~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~ 114 (635)
T 4g8a_A 38 CMELNFYKIPDN-LPFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQS 114 (635)
T ss_dssp CTTSCCSSCCSS-SCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCE
T ss_pred CCCCCcCccCCC-CCcCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCC
Confidence 344455666643 2358999999999 9999874 4689999999999999999999988999999999999999 9999
Q ss_pred ccc-cccCCCCCCEEEcCCCCCcccCc-cccCCCcccEEeCCCCCCcccc--cchhhcCCCCCccccccCCCCCC
Q 003753 556 LHV-GEGELIDLQYLNLSNTNICELPI-GIKSCTHLRTLLLDGTENLKAI--PVGMLSSLLSLRVFSWVPTRYAG 626 (798)
Q Consensus 556 lp~-~i~~L~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~l--p~~~i~~L~~L~~L~l~~~~~~~ 626 (798)
+|. .+.+|++|++|++++|+++.+|. .++++++|++|++++|. +..+ |.. ++.+++|++|++++|.+..
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCccccc
Confidence 975 57999999999999999999975 58999999999999997 6543 554 8899999999999987653
No 64
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=2.6e-18 Score=180.46 Aligned_cols=192 Identities=19% Similarity=0.275 Sum_probs=164.7
Q ss_pred hhchhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCC
Q 003753 488 TASWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQ 567 (798)
Q Consensus 488 ~~~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~ 567 (798)
...+++++.|++.++ .+..++ .+..+++|++|++++|.+..++. +..+++|++|++++| .++.+| .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCC
Confidence 345678999999999 899888 78889999999999999999887 899999999999999 899886 589999999
Q ss_pred EEEcCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccC
Q 003753 568 YLNLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESL 647 (798)
Q Consensus 568 ~L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l 647 (798)
+|++++|.+..+|. +..+++|++|++++|. +..++. +..+++|++|++++|.+.. +..+..+
T Consensus 111 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~--------------~~~l~~l 172 (308)
T 1h6u_A 111 TLDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQVSD--------------LTPLANL 172 (308)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCC--------------CGGGTTC
T ss_pred EEECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCCcCCC--------------ChhhcCC
Confidence 99999999999874 8999999999999997 888876 8899999999999987751 2227888
Q ss_pred CCCCeeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCCcccCCCCccEEEeecCC
Q 003753 648 KHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLTCIVYIPRLRFLFAKDCP 723 (798)
Q Consensus 648 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~ 723 (798)
++|+.|+++.+....+..+ ..+ ++|+.|++++|.++.++.+..+++|+.|++++|.
T Consensus 173 ~~L~~L~l~~n~l~~~~~l-------------------~~l-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 173 SKLTTLKADDNKISDISPL-------------------ASL-PNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp TTCCEEECCSSCCCCCGGG-------------------GGC-TTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred CCCCEEECCCCccCcChhh-------------------cCC-CCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence 9999999987765554431 123 7899999999988888889999999999999865
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.6e-19 Score=202.13 Aligned_cols=220 Identities=16% Similarity=0.093 Sum_probs=179.5
Q ss_pred CCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCccccCCCcccEE
Q 003753 513 PCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKSCTHLRTL 592 (798)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L 592 (798)
..+++|++|++++|.+..+++..|..+++|++|+|++| .++..++ ++.+++|++|+|++|.+..+|. .++|++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 45669999999999999998877999999999999999 8887765 9999999999999999988874 3899999
Q ss_pred eCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecccchhhhhhhhhh
Q 003753 593 LLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKL 672 (798)
Q Consensus 593 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~ 672 (798)
++++|. +..+|.. .+++|++|++++|.+. ......+.++++|+.|+++.+....... ....
T Consensus 105 ~L~~N~-l~~~~~~---~l~~L~~L~L~~N~l~------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~l~- 165 (487)
T 3oja_A 105 HAANNN-ISRVSCS---RGQGKKNIYLANNKIT------------MLRDLDEGCRSRVQYLDLKLNEIDTVNF--AELA- 165 (487)
T ss_dssp ECCSSC-CCCEEEC---CCSSCEEEECCSSCCC------------SGGGBCGGGGSSEEEEECTTSCCCEEEG--GGGG-
T ss_pred ECcCCc-CCCCCcc---ccCCCCEEECCCCCCC------------CCCchhhcCCCCCCEEECCCCCCCCcCh--HHHh-
Confidence 999997 8888754 5789999999999875 2334456778999999997665443221 1110
Q ss_pred cccceeeeeccCchhhhccCceEEeeccCCCCCCcccCCCCccEEEeecCCchhhhhccccccCCCCcccccccccceee
Q 003753 673 QSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLTCIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAY 752 (798)
Q Consensus 673 ~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~ 752 (798)
..+ ++|+.|+|++|.++.++....+++|+.|+|++|. +..++ ..+..+++|+.|+
T Consensus 166 -------------~~l-~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~----------~~~~~l~~L~~L~ 220 (487)
T 3oja_A 166 -------------ASS-DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNK-LAFMG----------PEFQSAAGVTWIS 220 (487)
T ss_dssp -------------GGT-TTCCEEECTTSCCCEEECCCCCTTCCEEECCSSC-CCEEC----------GGGGGGTTCSEEE
T ss_pred -------------hhC-CcccEEecCCCccccccccccCCCCCEEECCCCC-CCCCC----------HhHcCCCCccEEE
Confidence 123 8999999999999888877889999999999964 55543 3577899999999
Q ss_pred cCCccchhhcccCCCCCCCcceeeeccCCCC
Q 003753 753 FFKLPNLKNICHKAMAFPSLERIYVHGCPSL 783 (798)
Q Consensus 753 L~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L 783 (798)
|++ +.+..+|.....+++|+.|++++|+-.
T Consensus 221 Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 221 LRN-NKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTT-SCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred ecC-CcCcccchhhccCCCCCEEEcCCCCCc
Confidence 999 567788888888999999999998643
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=4.5e-18 Score=176.82 Aligned_cols=198 Identities=20% Similarity=0.221 Sum_probs=163.8
Q ss_pred hhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEE
Q 003753 491 WKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLN 570 (798)
Q Consensus 491 ~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~ 570 (798)
.++++.+.+.++ .+..+|..+. ++++.|++++|.+..+++..|..+++|++|+|++| .++.+|.. +.+++|++|+
T Consensus 9 l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEE
T ss_pred cCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEE
Confidence 457889999998 9999986554 78999999999999998888999999999999999 99998764 8899999999
Q ss_pred cCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCC
Q 003753 571 LSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHL 650 (798)
Q Consensus 571 Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L 650 (798)
+++|.+..+|..+..+++|++|++++|. +..+|.+.+..+++|++|++++|.+. ......+..+++|
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~------------~~~~~~~~~l~~L 150 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELK------------TLPPGLLTPTPKL 150 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCC------------CCCTTTTTTCTTC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCC------------ccChhhcccccCC
Confidence 9999999999999999999999999997 88998777999999999999999875 2233446778889
Q ss_pred CeeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCC-cccCCCCccEEEeecCCc
Q 003753 651 QEISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLT-CIVYIPRLRFLFAKDCPS 724 (798)
Q Consensus 651 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~-~l~~l~~L~~L~L~~~~~ 724 (798)
+.|+++.+....+..... ..+ ++|+.|+|++|.++.+| .+..+++|+.|+|++|+.
T Consensus 151 ~~L~L~~N~l~~l~~~~~-----------------~~l-~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGLL-----------------NGL-ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CEEECTTSCCSCCCTTTT-----------------TTC-TTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CEEECCCCcCCccCHHHh-----------------cCc-CCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 988887665443322110 123 78999999999888776 466778899999987653
No 67
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=200.57 Aligned_cols=263 Identities=15% Similarity=0.152 Sum_probs=190.0
Q ss_pred eEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccc-cccccCCCCCCEEEcCCC
Q 003753 496 RVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLSNT 574 (798)
Q Consensus 496 ~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~Ls~~ 574 (798)
.+..+++ .+..+|. -.++|++|++++|.+..+++..|.++++|++|+|++|..+..+ |..++++++|++|+|++|
T Consensus 8 ~~dcs~~-~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFC-NLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCC-CSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCC-CCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 3455566 7888884 5589999999999999987777999999999999999555667 788999999999999999
Q ss_pred CCccc-CccccCCCcccEEeCCCCCCccc-ccc-hhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCC
Q 003753 575 NICEL-PIGIKSCTHLRTLLLDGTENLKA-IPV-GMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQ 651 (798)
Q Consensus 575 ~i~~l-p~~i~~l~~L~~L~l~~~~~l~~-lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 651 (798)
.+..+ |..+.++++|++|++++|. +.. +|. ..++++++|++|++++|.+.. ......++++++|+
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~-----------~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQIRS-----------LYLHPSFGKLNSLK 151 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCCCCC-----------CCCCGGGGTCSSCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCcccc-----------cccchhHhhCCCCC
Confidence 99887 8899999999999999997 554 443 348899999999999998762 12224678888889
Q ss_pred eeEEEEecccchh--hhhhhhhhccc------------------------------ceeeeec-------cCc-------
Q 003753 652 EISVIILTIDSLN--KLKSSLKLQSC------------------------------IRRLVMG-------LPE------- 685 (798)
Q Consensus 652 ~L~l~~~~~~~~~--~l~~~~~~~~~------------------------------L~~L~l~-------lp~------- 685 (798)
.|+++.+...... .+.... ..+ |+.|++. +|.
T Consensus 152 ~L~Ls~N~i~~~~~~~l~~l~--~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 229 (844)
T 3j0a_A 152 SIDFSSNQIFLVCEHELEPLQ--GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229 (844)
T ss_dssp EEEEESSCCCCCCSGGGHHHH--HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSC
T ss_pred EEECCCCcCCeeCHHHccccc--CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcC
Confidence 8888866543221 111000 012 4444440 000
Q ss_pred ----------------------------hhh----hccCceEEeeccCCCCCC--cccCCCCccEEEeecCCchhhhhcc
Q 003753 686 ----------------------------AIF----SQDLQDLSIINCSIKDLT--CIVYIPRLRFLFAKDCPSLEEIIAS 731 (798)
Q Consensus 686 ----------------------------~~l----p~~L~~L~L~~~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~ 731 (798)
..| +++|+.|++++|.+..++ .+..+++|+.|+|++|. +..+.
T Consensus 230 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~-- 306 (844)
T 3j0a_A 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIA-- 306 (844)
T ss_dssp SCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEEC--
T ss_pred cccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCC--
Confidence 000 256788888887665542 46788888888888854 33332
Q ss_pred ccccCCCCcccccccccceeecCCccchhhc-ccCCCCCCCcceeeeccCCCCCCCCC
Q 003753 732 DLRFEPSEENLSMFLHLRQAYFFKLPNLKNI-CHKAMAFPSLERIYVHGCPSLRKLPL 788 (798)
Q Consensus 732 ~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i-~~~~~~~~~L~~L~l~~c~~L~~lp~ 788 (798)
+..+..+++|+.|+|+++ .+..+ +.....+++|+.|++++| ++..+|.
T Consensus 307 -------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~ 355 (844)
T 3j0a_A 307 -------DEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKN-HIAIIQD 355 (844)
T ss_dssp -------TTTTTTCSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEECCSC-CCCCCCS
T ss_pred -------hHHhcCCCCCCEEECCCC-CCCccCHHHhcCCCCCCEEECCCC-CCCccCh
Confidence 235678899999999985 45554 456678899999999886 5665554
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=8.6e-18 Score=173.12 Aligned_cols=196 Identities=21% Similarity=0.297 Sum_probs=144.2
Q ss_pred ceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccccc-ccCCCCCCEEEc
Q 003753 493 EAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVG-EGELIDLQYLNL 571 (798)
Q Consensus 493 ~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~L 571 (798)
..+.+.+.++ .+..+|..+. ++|+.|++++|.+..++...|.++++|++|++++| .++.+|.. +..+++|++|++
T Consensus 17 ~~~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCC-CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEEC
Confidence 4567888888 8888885444 68999999999999988877899999999999999 88888765 478999999999
Q ss_pred CCCCCcccCc-cccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCC
Q 003753 572 SNTNICELPI-GIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHL 650 (798)
Q Consensus 572 s~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L 650 (798)
++|.+..+|. .+..+++|++|++++|. +..+|...+..+++|++|++++|.+. ......+..+++|
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~------------~~~~~~~~~l~~L 159 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQ------------SLPKGVFDKLTSL 159 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC------------CCCTTTTTTCTTC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCC------------ccCHhHccCCccc
Confidence 9999988865 46889999999999987 88888776889999999999988765 1222335566677
Q ss_pred CeeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCCc--ccCCCCccEEEeecCC
Q 003753 651 QEISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLTC--IVYIPRLRFLFAKDCP 723 (798)
Q Consensus 651 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~~--l~~l~~L~~L~L~~~~ 723 (798)
+.|+++.+....+.... . ..+ ++|+.|+|++|.++.++. +..+++|+.|+|++|+
T Consensus 160 ~~L~L~~n~l~~~~~~~--~---------------~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 160 KELRLYNNQLKRVPEGA--F---------------DKL-TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CEEECCSSCCSCCCTTT--T---------------TTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ceeEecCCcCcEeChhH--h---------------ccC-CCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 77766554433322110 0 112 567777777776665543 5666777777776654
No 69
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=9.8e-18 Score=172.85 Aligned_cols=206 Identities=18% Similarity=0.207 Sum_probs=137.6
Q ss_pred hchhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccc-cccCCCCCC
Q 003753 489 ASWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHV-GEGELIDLQ 567 (798)
Q Consensus 489 ~~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~ 567 (798)
..+++++.+.+.++ .+..++ .+..+++|++|++++|.+..++. +..+++|++|++++| .++.+|. .++.+++|+
T Consensus 38 ~~l~~L~~L~l~~~-~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANNS-DIKSVQ-GIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGN-QLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCC
T ss_pred ccccceeeeeeCCC-Cccccc-ccccCCCCcEEECCCCCCCCchh--hcCCCCCCEEECCCC-ccCccChhHhcCCcCCC
Confidence 34556777777777 676666 56677777777777777766642 677777777777777 7776654 356777777
Q ss_pred EEEcCCCCCcccCcc-ccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhcc
Q 003753 568 YLNLSNTNICELPIG-IKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELES 646 (798)
Q Consensus 568 ~L~Ls~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 646 (798)
+|++++|.+..+|.. +..+++|++|++++|. +..+|...+..+++|++|++++|.+.. .....+.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~- 178 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQS------------LPEGVFD- 178 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC------------CCTTTTT-
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCc------------cCHHHhc-
Confidence 777777777766543 5677777777777775 666766656677777777777765431 1101111
Q ss_pred CCCCCeeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCCc--ccCCCCccEEEeecCCc
Q 003753 647 LKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLTC--IVYIPRLRFLFAKDCPS 724 (798)
Q Consensus 647 l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~~--l~~l~~L~~L~L~~~~~ 724 (798)
.+ ++|+.|++++|.++.++. +..+++|+.|++++|+.
T Consensus 179 ----------------------------------------~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 179 ----------------------------------------KL-TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp ----------------------------------------TC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ----------------------------------------CC-ccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 12 678888888887776653 67888888888888642
Q ss_pred hhhhhccccccCCCCcccccccccceeecCCccchhhcccCCCCCCC
Q 003753 725 LEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPS 771 (798)
Q Consensus 725 l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~ 771 (798)
.+.+|+|+.|++..+.....+|...+.++.
T Consensus 218 -----------------~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 218 -----------------DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp -----------------CCCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred -----------------cccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 234677888888775555566665554443
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=7.6e-18 Score=174.25 Aligned_cols=128 Identities=20% Similarity=0.202 Sum_probs=58.0
Q ss_pred ceeeEEeecCCCCCCCCC-CCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccc-ccccCCCCCCEEE
Q 003753 493 EAVRVSLWRSPSIDSLSP-TPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLH-VGEGELIDLQYLN 570 (798)
Q Consensus 493 ~l~~lsl~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~ 570 (798)
+++.|.+.+| .+..++. .+..+++|++|++++|.+..++...|.++++|++|++++| .++.++ ..+.++++|++|+
T Consensus 29 ~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred CccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEE
Confidence 3444444444 4444432 2344444444444444444444433444444444444444 444432 3344444444444
Q ss_pred cCCCCCcccCc-cccCCCcccEEeCCCCCCccc--ccchhhcCCCCCccccccCCCC
Q 003753 571 LSNTNICELPI-GIKSCTHLRTLLLDGTENLKA--IPVGMLSSLLSLRVFSWVPTRY 624 (798)
Q Consensus 571 Ls~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~ 624 (798)
+++|.+..++. .+.++++|++|++++|. +.. +|.. +..+++|++|++++|.+
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCC
Confidence 44444444432 34444444444444443 333 2332 44444444444444443
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=6.9e-18 Score=177.20 Aligned_cols=197 Identities=20% Similarity=0.224 Sum_probs=164.0
Q ss_pred CCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCccccCCCcccE
Q 003753 512 PPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKSCTHLRT 591 (798)
Q Consensus 512 ~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 591 (798)
...+++|++|++++|.+..++. +..+++|++|++++| .++.+|. +..+++|++|++++|.+..+| .+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 4568899999999999998874 899999999999999 9999987 999999999999999999887 7999999999
Q ss_pred EeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecccchhhhhhhhh
Q 003753 592 LLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDSLNKLKSSLK 671 (798)
Q Consensus 592 L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~ 671 (798)
|++++|. +..+|. +..+++|++|++++|.+.. +..+..+++|+.|+++.+....+..+
T Consensus 112 L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~--------------~~~l~~l~~L~~L~l~~n~l~~~~~l----- 169 (308)
T 1h6u_A 112 LDLTSTQ-ITDVTP--LAGLSNLQVLYLDLNQITN--------------ISPLAGLTNLQYLSIGNAQVSDLTPL----- 169 (308)
T ss_dssp EECTTSC-CCCCGG--GTTCTTCCEEECCSSCCCC--------------CGGGGGCTTCCEEECCSSCCCCCGGG-----
T ss_pred EECCCCC-CCCchh--hcCCCCCCEEECCCCccCc--------------CccccCCCCccEEEccCCcCCCChhh-----
Confidence 9999998 888875 8999999999999998751 12278899999999987665544331
Q ss_pred hcccceeeeeccCchhhhccCceEEeeccCCCCCCcccCCCCccEEEeecCCchhhhhccccccCCCCccccccccccee
Q 003753 672 LQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLTCIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQA 751 (798)
Q Consensus 672 ~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L 751 (798)
..+ ++|+.|++++|.++.++.+..+++|++|++++|. +..+ ..+..+++|+.|
T Consensus 170 --------------~~l-~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~-l~~~-----------~~l~~l~~L~~L 222 (308)
T 1h6u_A 170 --------------ANL-SKLTTLKADDNKISDISPLASLPNLIEVHLKNNQ-ISDV-----------SPLANTSNLFIV 222 (308)
T ss_dssp --------------TTC-TTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSC-CCBC-----------GGGTTCTTCCEE
T ss_pred --------------cCC-CCCCEEECCCCccCcChhhcCCCCCCEEEccCCc-cCcc-----------ccccCCCCCCEE
Confidence 123 8899999999999888889999999999999864 4443 136789999999
Q ss_pred ecCCccchhhcc
Q 003753 752 YFFKLPNLKNIC 763 (798)
Q Consensus 752 ~L~~~~~l~~i~ 763 (798)
+|+++ .+...+
T Consensus 223 ~l~~N-~i~~~~ 233 (308)
T 1h6u_A 223 TLTNQ-TITNQP 233 (308)
T ss_dssp EEEEE-EEECCC
T ss_pred EccCC-eeecCC
Confidence 99985 344433
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=4.4e-18 Score=171.93 Aligned_cols=207 Identities=14% Similarity=0.155 Sum_probs=139.6
Q ss_pred CCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcc-cccccc-cccCCCCCCEEEcCC-CCCcccC
Q 003753 504 SIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAK-LSKLHV-GEGELIDLQYLNLSN-TNICELP 580 (798)
Q Consensus 504 ~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~-i~~lp~-~i~~L~~L~~L~Ls~-~~i~~lp 580 (798)
.+.++|. + .++|++|++++|.++.+++..|.++++|++|++++| . ++.+|. .+..+++|++|++++ |.++.+|
T Consensus 22 ~l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 22 DIQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID-VTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp SCSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECC-SSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred CccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCC-CCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 4666774 2 337888888888888888766888888888888888 5 777754 677888888888887 7887775
Q ss_pred -ccccCCCcccEEeCCCCCCcccccchhhcCCCCCc---cccccCC-CCCCccCCCCCCCcccccHHHhccCCCCCeeEE
Q 003753 581 -IGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLR---VFSWVPT-RYAGFNYGSSVPGVTVLLLEELESLKHLQEISV 655 (798)
Q Consensus 581 -~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l 655 (798)
..+.++++|++|++++|. +..+|. +..+++|+ +|++++| .+. ......+.+
T Consensus 98 ~~~f~~l~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~~L~l~~N~~l~------------~i~~~~~~~--------- 153 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTG-LKMFPD--LTKVYSTDIFFILEITDNPYMT------------SIPVNAFQG--------- 153 (239)
T ss_dssp TTSEECCTTCCEEEEEEEC-CCSCCC--CTTCCBCCSEEEEEEESCTTCC------------EECTTTTTT---------
T ss_pred HHHhCCCCCCCEEeCCCCC-Cccccc--cccccccccccEEECCCCcchh------------hcCcccccc---------
Confidence 457778888888888886 777775 66677776 7777766 432 111111111
Q ss_pred EEecccchhhhhhhhhhcccceeeeeccCchhhhccCc-eEEeeccCCCCCCc-ccCCCCccEEEeecCCchhhhhcccc
Q 003753 656 IILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQ-DLSIINCSIKDLTC-IVYIPRLRFLFAKDCPSLEEIIASDL 733 (798)
Q Consensus 656 ~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~-~L~L~~~~l~~l~~-l~~l~~L~~L~L~~~~~l~~l~~~~~ 733 (798)
+ ++|+ .|++++|.++.+|. ....++|+.|++++|..++.++.
T Consensus 154 --------------------------------l-~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~--- 197 (239)
T 2xwt_C 154 --------------------------------L-CNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK--- 197 (239)
T ss_dssp --------------------------------T-BSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECT---
T ss_pred --------------------------------h-hcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCH---
Confidence 2 6677 77777776665542 22236788888887644555432
Q ss_pred ccCCCCcccccc-cccceeecCCccchhhcccCCCCCCCcceeeeccCCCC
Q 003753 734 RFEPSEENLSMF-LHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCPSL 783 (798)
Q Consensus 734 ~~~~~~~~~~~~-~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L 783 (798)
..+..+ ++|+.|++++ +.++.++.. .|++|+.|.++++++|
T Consensus 198 ------~~~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 198 ------DAFGGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp ------TTTTTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECTTC---
T ss_pred ------HHhhccccCCcEEECCC-CccccCChh--HhccCceeeccCccCC
Confidence 345566 7888888887 566666654 6788888888887654
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=1.7e-17 Score=171.66 Aligned_cols=210 Identities=16% Similarity=0.171 Sum_probs=161.9
Q ss_pred CCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccc-cccCCCCCCEEEcCCCCCcccC-c
Q 003753 504 SIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHV-GEGELIDLQYLNLSNTNICELP-I 581 (798)
Q Consensus 504 ~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~Ls~~~i~~lp-~ 581 (798)
.+.++|..+. ++|++|++++|.+..++...|.++++|++|++++| .++.++. .+..+++|++|++++|.+..++ .
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 5667775443 57999999999999999877999999999999999 8988854 7899999999999999999885 6
Q ss_pred cccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEeccc
Q 003753 582 GIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTID 661 (798)
Q Consensus 582 ~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 661 (798)
.+.++++|++|++++|. +..++...+..+++|++|++++|.+.. ......+.++++|+.|+++.+...
T Consensus 95 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQS-----------FKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCC-----------CCCCGGGGGCTTCCEEECCSSCCC
T ss_pred hhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccce-----------ecCchhhccCCCCCEEECCCCCCC
Confidence 78999999999999997 777877558999999999999998751 123467888999999999876554
Q ss_pred chhhhhhhhhhcccceeeeeccCchhhhccCc----eEEeeccCCCCCC-cccCCCCccEEEeecCCchhhhhccccccC
Q 003753 662 SLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQ----DLSIINCSIKDLT-CIVYIPRLRFLFAKDCPSLEEIIASDLRFE 736 (798)
Q Consensus 662 ~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~----~L~L~~~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~ 736 (798)
.+..- .. ..+ ++|+ +|++++|.++.++ ......+|+.|++++|. ++.++.
T Consensus 163 ~~~~~--~~---------------~~l-~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~------ 217 (276)
T 2z62_A 163 SIYCT--DL---------------RVL-HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPD------ 217 (276)
T ss_dssp EECGG--GG---------------HHH-HTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCT------
T ss_pred cCCHH--Hh---------------hhh-hhccccceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCH------
Confidence 43211 11 111 3444 7888888777654 33445589999998854 554422
Q ss_pred CCCcccccccccceeecCCc
Q 003753 737 PSEENLSMFLHLRQAYFFKL 756 (798)
Q Consensus 737 ~~~~~~~~~~~L~~L~L~~~ 756 (798)
..+..+++|+.|+|+++
T Consensus 218 ---~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 218 ---GIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ---TTTTTCCSCCEEECCSS
T ss_pred ---hHhcccccccEEEccCC
Confidence 34567888999998874
No 74
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=2.3e-17 Score=182.63 Aligned_cols=120 Identities=17% Similarity=0.133 Sum_probs=76.6
Q ss_pred hceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEc
Q 003753 492 KEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNL 571 (798)
Q Consensus 492 ~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~L 571 (798)
++++.+.+.+| .+..+| .+..+++|++|++++|.+..+|.. ..+|++|++++| .++.+| .++.+++|++|++
T Consensus 131 ~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCC-cCCcCc-cccCCCCCCEEEC
Confidence 35666666666 666666 466666666666666666665542 246666666666 666666 4666667777777
Q ss_pred CCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCC
Q 003753 572 SNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 572 s~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 625 (798)
++|.+..+|... .+|++|++++|. +..+|. ++.+++|++|++++|.+.
T Consensus 203 ~~N~l~~l~~~~---~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 203 DNNSLKKLPDLP---LSLESIVAGNNI-LEELPE--LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp CSSCCSSCCCCC---TTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSSCCS
T ss_pred CCCcCCcCCCCc---CcccEEECcCCc-CCcccc--cCCCCCCCEEECCCCcCC
Confidence 776666665432 466667776665 556663 667777777777776654
No 75
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=6.1e-18 Score=187.32 Aligned_cols=244 Identities=22% Similarity=0.154 Sum_probs=154.2
Q ss_pred hhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccc-cccHHHHhcCCce-------------eEEeCCCCcccccc
Q 003753 491 WKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIK-EFENKFFKSMYAL-------------RVLDSSQNAKLSKL 556 (798)
Q Consensus 491 ~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~l~~L-------------r~L~L~~~~~i~~l 556 (798)
...++.+.++++ .++.+|..+.++++|++|++++|.+. .+|.. ++++++| ++|++++| .++.+
T Consensus 10 ~~~L~~L~l~~n-~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~l 86 (454)
T 1jl5_A 10 NTFLQEPLRHSS-NLTEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNL-GLSSL 86 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCC
T ss_pred cccchhhhcccC-chhhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhccCCCEEEecCC-ccccC
Confidence 457899999999 88999988999999999999999776 56665 7777765 99999999 89988
Q ss_pred cccccCCCCCCEEEcCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCc
Q 003753 557 HVGEGELIDLQYLNLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGV 636 (798)
Q Consensus 557 p~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 636 (798)
|.. .++|++|++++|.++.+|.. +.+|++|++++|. +..+|.. .++|++|++++|.+.
T Consensus 87 p~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~----~~~L~~L~L~~n~l~----------- 144 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL----PPLLEYLGVSNNQLE----------- 144 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC----CTTCCEEECCSSCCS-----------
T ss_pred CCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC----CCCCCEEECcCCCCC-----------
Confidence 873 46899999999999888853 4789999999886 7766642 268999999888765
Q ss_pred ccccHHHhccCCCCCeeEEEEecccchhhhhhhhhhcccceeeee------ccCc-hhhhccCceEEeeccCCCCCCccc
Q 003753 637 TVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM------GLPE-AIFSQDLQDLSIINCSIKDLTCIV 709 (798)
Q Consensus 637 ~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~lp~-~~lp~~L~~L~L~~~~l~~l~~l~ 709 (798)
. +.++.++++|+.|+++.+....++... .+|+.|++ .+|. ..+ ++|+.|++++|.++.+|..
T Consensus 145 -~--lp~~~~l~~L~~L~l~~N~l~~lp~~~------~~L~~L~L~~n~l~~l~~~~~l-~~L~~L~l~~N~l~~l~~~- 213 (454)
T 1jl5_A 145 -K--LPELQNSSFLKIIDVDNNSLKKLPDLP------PSLEFIAAGNNQLEELPELQNL-PFLTAIYADNNSLKKLPDL- 213 (454)
T ss_dssp -S--CCCCTTCTTCCEEECCSSCCSCCCCCC------TTCCEEECCSSCCSSCCCCTTC-TTCCEEECCSSCCSSCCCC-
T ss_pred -C--CcccCCCCCCCEEECCCCcCcccCCCc------ccccEEECcCCcCCcCccccCC-CCCCEEECCCCcCCcCCCC-
Confidence 1 124788888999888766554433221 25555555 2232 345 6677777777766655533
Q ss_pred CCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccCCCCCCCCC
Q 003753 710 YIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCPSLRKLPL 788 (798)
Q Consensus 710 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~lp~ 788 (798)
.++|++|++++|. +..+ ..+..+++|+.|+++++ .+..++. .+++|+.|++++| +++.+|.
T Consensus 214 -~~~L~~L~l~~n~-l~~l-----------p~~~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N-~l~~l~~ 274 (454)
T 1jl5_A 214 -PLSLESIVAGNNI-LEEL-----------PELQNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDN-YLTDLPE 274 (454)
T ss_dssp -CTTCCEEECCSSC-CSSC-----------CCCTTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSS-CCSCCCC
T ss_pred -cCcccEEECcCCc-CCcc-----------cccCCCCCCCEEECCCC-cCCcccc---cccccCEEECCCC-cccccCc
Confidence 2467777777653 3333 13667888999999884 5666553 3478888888876 4555554
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=3.6e-18 Score=176.12 Aligned_cols=221 Identities=18% Similarity=0.246 Sum_probs=159.6
Q ss_pred ceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcC
Q 003753 493 EAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLS 572 (798)
Q Consensus 493 ~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls 572 (798)
++..+.+..+ .+..+. ....+++|+.|++.+|.+..++. +..+++|++|++++| .++.++ .++.+++|++|+++
T Consensus 20 ~l~~l~l~~~-~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKK-SVTDAV-TQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCS-CTTSEE-CHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECT
T ss_pred HHHHHHhcCc-cccccc-ccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECC
Confidence 4444555554 444443 34567788888888888877764 778888888888888 787765 68888888888888
Q ss_pred CCCCcccCcc-ccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCC
Q 003753 573 NTNICELPIG-IKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQ 651 (798)
Q Consensus 573 ~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 651 (798)
+|.+..+|.. +.++++|++|++++|. +..+|...+..+++|++|++++|.+.. .....+
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~~------- 153 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQS------------LPKGVF------- 153 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCC------------CCTTTT-------
T ss_pred CCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCc------------cCHHHh-------
Confidence 8888877644 6788888888888887 777777667888888888888876531 000001
Q ss_pred eeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCCc--ccCCCCccEEEeecCCchhhhh
Q 003753 652 EISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLTC--IVYIPRLRFLFAKDCPSLEEII 729 (798)
Q Consensus 652 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~~--l~~l~~L~~L~L~~~~~l~~l~ 729 (798)
..+ ++|+.|++++|.++.++. ++.+++|+.|++++|. +..++
T Consensus 154 ----------------------------------~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 197 (272)
T 3rfs_A 154 ----------------------------------DKL-TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVP 197 (272)
T ss_dssp ----------------------------------TTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCC
T ss_pred ----------------------------------ccC-ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccC
Confidence 112 789999999998887764 7899999999999964 44442
Q ss_pred ccccccCCCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccCCCCCCCCCCCC
Q 003753 730 ASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCPSLRKLPLSLE 791 (798)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~lp~~~~ 791 (798)
. ..+..+++|+.|+|++++- .+.+|+|+.|++..+.--..+|...+
T Consensus 198 ~---------~~~~~l~~L~~L~l~~N~~-------~~~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 198 D---------GVFDRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp T---------TTTTTCTTCCEEECCSSCB-------CCCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred H---------HHHhCCcCCCEEEccCCCc-------cccCcHHHHHHHHHHhCCCcccCccc
Confidence 2 3567899999999999742 24467888888776543345555444
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=2.7e-17 Score=170.97 Aligned_cols=198 Identities=21% Similarity=0.182 Sum_probs=155.5
Q ss_pred CCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccc-cccccCCCCCCEEEcCCCCCcccCccccCCCccc
Q 003753 512 PPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLSNTNICELPIGIKSCTHLR 590 (798)
Q Consensus 512 ~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~ 590 (798)
+.+++++++++++++.++.+|..+ .++|++|+|++| .++.+ |..+..+++|++|++++|.++.+|.. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 356788999999999999999763 378999999999 88877 56799999999999999999998754 8899999
Q ss_pred EEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecccchhhhhhhh
Q 003753 591 TLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDSLNKLKSSL 670 (798)
Q Consensus 591 ~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~ 670 (798)
+|++++|. +..+|.. +..+++|++|++++|.+. ......+.++++|+.|+++.+....+.....
T Consensus 81 ~L~Ls~N~-l~~l~~~-~~~l~~L~~L~l~~N~l~------------~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-- 144 (290)
T 1p9a_G 81 TLDLSHNQ-LQSLPLL-GQTLPALTVLDVSFNRLT------------SLPLGALRGLGELQELYLKGNELKTLPPGLL-- 144 (290)
T ss_dssp EEECCSSC-CSSCCCC-TTTCTTCCEEECCSSCCC------------CCCSSTTTTCTTCCEEECTTSCCCCCCTTTT--
T ss_pred EEECCCCc-CCcCchh-hccCCCCCEEECCCCcCc------------ccCHHHHcCCCCCCEEECCCCCCCccChhhc--
Confidence 99999997 8899986 899999999999999875 2233456778888888886655443322110
Q ss_pred hhcccceeeeeccCchhhhccCceEEeeccCCCCCCc--ccCCCCccEEEeecCCchhhhhccccccCCCCccccccccc
Q 003753 671 KLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLTC--IVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHL 748 (798)
Q Consensus 671 ~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~~--l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L 748 (798)
..+ ++|+.|+|++|.++.+|. +..+++|+.|+|++| .++.++ ..+..+++|
T Consensus 145 ---------------~~l-~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip----------~~~~~~~~L 197 (290)
T 1p9a_G 145 ---------------TPT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIP----------KGFFGSHLL 197 (290)
T ss_dssp ---------------TTC-TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCCCCC----------TTTTTTCCC
T ss_pred ---------------ccc-cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC-cCCccC----------hhhcccccC
Confidence 123 788899999888887764 677889999999885 445543 345566788
Q ss_pred ceeecCCcc
Q 003753 749 RQAYFFKLP 757 (798)
Q Consensus 749 ~~L~L~~~~ 757 (798)
+.|+|.+++
T Consensus 198 ~~l~L~~Np 206 (290)
T 1p9a_G 198 PFAFLHGNP 206 (290)
T ss_dssp SEEECCSCC
T ss_pred CeEEeCCCC
Confidence 888888754
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=3.7e-17 Score=168.34 Aligned_cols=197 Identities=21% Similarity=0.272 Sum_probs=157.5
Q ss_pred CcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccc-cccCCCCCCEEEcCCCCCcccCcc-ccCCCcccEEe
Q 003753 516 PRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHV-GEGELIDLQYLNLSNTNICELPIG-IKSCTHLRTLL 593 (798)
Q Consensus 516 ~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~ 593 (798)
.++++++++++.++.+|.. + .++|++|+|++| .++.+|. .+.++++|++|++++|.+..+|.. +.++++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~-~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSN-I--PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCCSC-C--CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccCCC-C--CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 3578999999999999875 2 368999999999 8998864 799999999999999999999765 47899999999
Q ss_pred CCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecccchhhhhhhhhhc
Q 003753 594 LDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQ 673 (798)
Q Consensus 594 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~ 673 (798)
+++|. +..+|...+..+++|++|++++|.+. ......+..+++|+.|+++.+....+.... .
T Consensus 92 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~--- 153 (270)
T 2o6q_A 92 VTDNK-LQALPIGVFDQLVNLAELRLDRNQLK------------SLPPRVFDSLTKLTYLSLGYNELQSLPKGV--F--- 153 (270)
T ss_dssp CCSSC-CCCCCTTTTTTCSSCCEEECCSSCCC------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTT--T---
T ss_pred CCCCc-CCcCCHhHcccccCCCEEECCCCccC------------eeCHHHhCcCcCCCEEECCCCcCCccCHhH--c---
Confidence 99997 88898877899999999999998875 233445678899999999766544332211 0
Q ss_pred ccceeeeeccCchhhhccCceEEeeccCCCCCCc--ccCCCCccEEEeecCCchhhhhccccccCCCCccccccccccee
Q 003753 674 SCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLTC--IVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQA 751 (798)
Q Consensus 674 ~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~~--l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L 751 (798)
..+ ++|+.|+|++|.++.++. +..+++|++|+|++| .++.++. ..+..+++|+.|
T Consensus 154 ------------~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~---------~~~~~l~~L~~L 210 (270)
T 2o6q_A 154 ------------DKL-TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPE---------GAFDSLEKLKML 210 (270)
T ss_dssp ------------TTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCT---------TTTTTCTTCCEE
T ss_pred ------------cCC-cccceeEecCCcCcEeChhHhccCCCcCEEECCCC-cCCcCCH---------HHhccccCCCEE
Confidence 123 789999999998887763 788999999999986 4554422 346678999999
Q ss_pred ecCCcc
Q 003753 752 YFFKLP 757 (798)
Q Consensus 752 ~L~~~~ 757 (798)
+|++++
T Consensus 211 ~l~~N~ 216 (270)
T 2o6q_A 211 QLQENP 216 (270)
T ss_dssp ECCSSC
T ss_pred EecCCC
Confidence 998854
No 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=7.6e-17 Score=184.07 Aligned_cols=224 Identities=20% Similarity=0.168 Sum_probs=174.8
Q ss_pred cCCcccchhhhhchhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccc
Q 003753 478 ETDKSIKEQETASWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLH 557 (798)
Q Consensus 478 ~~~~~~~~~~~~~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp 557 (798)
.+.....++. .+++++.|.+++| .+..+|. .+++|++|++++|.+..+|. .+++|++|++++| .++.+|
T Consensus 69 ~~N~l~~lp~--~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N-~l~~lp 137 (622)
T 3g06_A 69 PDNNLTSLPA--LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGN-QLTSLP 137 (622)
T ss_dssp CSCCCSCCCC--CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSS-CCSCCC
T ss_pred cCCCCCCCCC--cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCC-CCCcCC
Confidence 3444555555 4679999999999 8999984 78999999999999999887 5789999999999 999998
Q ss_pred ccccCCCCCCEEEcCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcc
Q 003753 558 VGEGELIDLQYLNLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVT 637 (798)
Q Consensus 558 ~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 637 (798)
.. +++|++|++++|++..+|. .+.+|+.|++++|. +..+| ..+++|++|++++|.+..+ +
T Consensus 138 ~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~-l~~l~----~~~~~L~~L~Ls~N~l~~l------~--- 197 (622)
T 3g06_A 138 VL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQ-LTSLP----MLPSGLQELSVSDNQLASL------P--- 197 (622)
T ss_dssp CC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCC----CCCTTCCEEECCSSCCSCC------C---
T ss_pred CC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCC-CCCCc----ccCCCCcEEECCCCCCCCC------C---
Confidence 75 4899999999999999985 35689999999997 88888 3478899999999877521 0
Q ss_pred cccHHHhccCCCCCeeEEEEecccchhhhhhhhhhcccceeeee------ccCchhhhccCceEEeeccCCCCCCcccCC
Q 003753 638 VLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM------GLPEAIFSQDLQDLSIINCSIKDLTCIVYI 711 (798)
Q Consensus 638 ~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l------~lp~~~lp~~L~~L~L~~~~l~~l~~l~~l 711 (798)
..+++|+.|+++.+....+... +++|+.|++ .+| ..+ ++|+.|+|++|.++.+|. .+
T Consensus 198 -------~~~~~L~~L~L~~N~l~~l~~~------~~~L~~L~Ls~N~L~~lp-~~l-~~L~~L~Ls~N~L~~lp~--~~ 260 (622)
T 3g06_A 198 -------TLPSELYKLWAYNNRLTSLPAL------PSGLKELIVSGNRLTSLP-VLP-SELKELMVSGNRLTSLPM--LP 260 (622)
T ss_dssp -------CCCTTCCEEECCSSCCSSCCCC------CTTCCEEECCSSCCSCCC-CCC-TTCCEEECCSSCCSCCCC--CC
T ss_pred -------CccchhhEEECcCCcccccCCC------CCCCCEEEccCCccCcCC-CCC-CcCcEEECCCCCCCcCCc--cc
Confidence 1236777777766655443322 246777776 334 344 899999999999888887 78
Q ss_pred CCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchh
Q 003753 712 PRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLK 760 (798)
Q Consensus 712 ~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 760 (798)
++|+.|+|++| .+..++ ..+..+++|+.|+|++++--.
T Consensus 261 ~~L~~L~Ls~N-~L~~lp----------~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 261 SGLLSLSVYRN-QLTRLP----------ESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp TTCCEEECCSS-CCCSCC----------GGGGGSCTTCEEECCSCCCCH
T ss_pred ccCcEEeCCCC-CCCcCC----------HHHhhccccCEEEecCCCCCC
Confidence 99999999996 455553 467889999999999965433
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=1.9e-17 Score=174.43 Aligned_cols=203 Identities=12% Similarity=0.047 Sum_probs=105.7
Q ss_pred CCCcceeeeecccccc-cccHHHH-hcCCceeEEeCCCCcccccccccccCC-----CCCCEEEcCCCCCcccC-ccccC
Q 003753 514 CSPRLLTLLVRYTMIK-EFENKFF-KSMYALRVLDSSQNAKLSKLHVGEGEL-----IDLQYLNLSNTNICELP-IGIKS 585 (798)
Q Consensus 514 ~~~~L~~L~l~~~~~~-~l~~~~~-~~l~~Lr~L~L~~~~~i~~lp~~i~~L-----~~L~~L~Ls~~~i~~lp-~~i~~ 585 (798)
++++|++|++++|.+. .+|..+| ..+++|++|+|++| .++.+|..++.+ ++|++|++++|++..+| ..+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 3555666666665554 3444322 55566666666666 555555555444 55666666666555553 45555
Q ss_pred CCcccEEeCCCCCCccc--ccch-hhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecccc
Q 003753 586 CTHLRTLLLDGTENLKA--IPVG-MLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDS 662 (798)
Q Consensus 586 l~~L~~L~l~~~~~l~~--lp~~-~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~ 662 (798)
+++|++|++++|..... +|.. .+..+++|++|++++|.+... ......-+.++++|+.|+++.+....
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~---------~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP---------SGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH---------HHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch---------HHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 66666666665542221 1222 015556666666665554310 01111122345556666554443322
Q ss_pred hhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCCcccCCCCccEEEeecCCchhhhhccccccCCCCccc
Q 003753 663 LNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLTCIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENL 742 (798)
Q Consensus 663 ~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~ 742 (798)
....... ..+ ++|++|++++|.++.+|.-.. ++|++|+|++| .++.+ ..+
T Consensus 243 ~~~~~~~----------------~~l-~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N-~l~~~-----------p~~ 292 (312)
T 1wwl_A 243 AAGAPSC----------------DWP-SQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYN-RLDRN-----------PSP 292 (312)
T ss_dssp SCCCSCC----------------CCC-TTCCEEECTTSCCSSCCSSCC-SEEEEEECCSS-CCCSC-----------CCT
T ss_pred ccchhhh----------------hhc-CCCCEEECCCCccChhhhhcc-CCceEEECCCC-CCCCC-----------hhH
Confidence 2100000 012 678888888887776653222 77888888875 34433 125
Q ss_pred ccccccceeecCCc
Q 003753 743 SMFLHLRQAYFFKL 756 (798)
Q Consensus 743 ~~~~~L~~L~L~~~ 756 (798)
..+++|+.|+|+++
T Consensus 293 ~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 293 DELPQVGNLSLKGN 306 (312)
T ss_dssp TTSCEEEEEECTTC
T ss_pred hhCCCCCEEeccCC
Confidence 67788888888874
No 81
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=3e-17 Score=170.77 Aligned_cols=168 Identities=20% Similarity=0.230 Sum_probs=82.9
Q ss_pred CCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCccccCCCcccEEe
Q 003753 514 CSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKSCTHLRTLL 593 (798)
Q Consensus 514 ~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~ 593 (798)
.+++|+.|++++|.+..++. +..+++|++|++++| .++.++. +..+++|++|++++|.+..+| .+..+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccChh--HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCCh-hhccCCCCCEEE
Confidence 34444444444444444432 444455555555555 4444443 444555555555555444443 244455555555
Q ss_pred CCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecccchhhhhhhhhhc
Q 003753 594 LDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQ 673 (798)
Q Consensus 594 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~ 673 (798)
+++|. +..++. +..+++|++|++++|.+.. +..+..+++|+.|+++.+....+..+
T Consensus 119 L~~n~-i~~~~~--l~~l~~L~~L~l~~n~l~~--------------~~~l~~l~~L~~L~L~~N~l~~~~~l------- 174 (291)
T 1h6t_A 119 LEHNG-ISDING--LVHLPQLESLYLGNNKITD--------------ITVLSRLTKLDTLSLEDNQISDIVPL------- 174 (291)
T ss_dssp CTTSC-CCCCGG--GGGCTTCCEEECCSSCCCC--------------CGGGGGCTTCSEEECCSSCCCCCGGG-------
T ss_pred CCCCc-CCCChh--hcCCCCCCEEEccCCcCCc--------------chhhccCCCCCEEEccCCccccchhh-------
Confidence 55543 444432 4445555555555444320 12344444455554443333222210
Q ss_pred ccceeeeeccCchhhhccCceEEeeccCCCCCCcccCCCCccEEEeecCC
Q 003753 674 SCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLTCIVYIPRLRFLFAKDCP 723 (798)
Q Consensus 674 ~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~ 723 (798)
..+ ++|+.|++++|.++.++.+..+++|+.|++++|.
T Consensus 175 ------------~~l-~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 175 ------------AGL-TKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp ------------TTC-TTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred ------------cCC-CccCEEECCCCcCCCChhhccCCCCCEEECcCCc
Confidence 112 5677777777766666666777777777777653
No 82
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.68 E-value=3.3e-16 Score=182.34 Aligned_cols=140 Identities=19% Similarity=0.216 Sum_probs=116.4
Q ss_pred CCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccc-cccCCCCCCEEEcCCCCCcccCc-
Q 003753 504 SIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHV-GEGELIDLQYLNLSNTNICELPI- 581 (798)
Q Consensus 504 ~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~Ls~~~i~~lp~- 581 (798)
.+.++|..++ +++++|+|++|.++.+++..|.++++|++|+|++| .|+.+|+ .|.+|++|++|+|++|+++.+|.
T Consensus 42 ~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 42 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp CCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred CcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence 5677885543 47999999999999999888999999999999999 9999964 68999999999999999999985
Q ss_pred cccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEe
Q 003753 582 GIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIIL 658 (798)
Q Consensus 582 ~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~ 658 (798)
.|.++++|++|++++|. +..+|...++++++|++|++++|.+... .....+..+++|+.|+++.+
T Consensus 119 ~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~-----------~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSF-----------KLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp GGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCC-----------CCCGGGGGCTTCCEEECCSS
T ss_pred HhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccC-----------CCchhhccchhhhhhcccCc
Confidence 57999999999999997 8999987799999999999999987531 12233445555555555433
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.67 E-value=6.1e-18 Score=184.12 Aligned_cols=136 Identities=15% Similarity=0.094 Sum_probs=70.7
Q ss_pred CCCCCcceeeeecccccccccHHH----HhcCCceeEEeCCCCccccc----ccccc-------cCCCCCCEEEcCCCCC
Q 003753 512 PPCSPRLLTLLVRYTMIKEFENKF----FKSMYALRVLDSSQNAKLSK----LHVGE-------GELIDLQYLNLSNTNI 576 (798)
Q Consensus 512 ~~~~~~L~~L~l~~~~~~~l~~~~----~~~l~~Lr~L~L~~~~~i~~----lp~~i-------~~L~~L~~L~Ls~~~i 576 (798)
+..+++|++|++++|.+....... +..+++|++|+|++| .+.. +|..+ ..+++|++|+|++|.+
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 344556666666666554432221 445666666666665 3332 23222 4566666666666665
Q ss_pred cc-----cCccccCCCcccEEeCCCCCCcccccchh----hcCC---------CCCccccccCCCCCCccCCCCCCCccc
Q 003753 577 CE-----LPIGIKSCTHLRTLLLDGTENLKAIPVGM----LSSL---------LSLRVFSWVPTRYAGFNYGSSVPGVTV 638 (798)
Q Consensus 577 ~~-----lp~~i~~l~~L~~L~l~~~~~l~~lp~~~----i~~L---------~~L~~L~l~~~~~~~~~~~~~~~~~~~ 638 (798)
.. +|..+.++++|++|++++|. +...+... +..+ ++|++|++++|.+. ..
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~-----------~~ 174 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE-----------NG 174 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT-----------GG
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC-----------cH
Confidence 54 45556666666666666665 33221111 2223 56666666666543 11
Q ss_pred ccH---HHhccCCCCCeeEEEEecc
Q 003753 639 LLL---EELESLKHLQEISVIILTI 660 (798)
Q Consensus 639 ~~~---~~L~~l~~L~~L~l~~~~~ 660 (798)
... ..+..+++|+.|+++.+..
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n~l 199 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQNGI 199 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCC
Confidence 111 3455566666666655443
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=5.4e-17 Score=163.89 Aligned_cols=204 Identities=11% Similarity=0.129 Sum_probs=161.8
Q ss_pred ccchhhhhchhceeeEEeecCCCCCCCCC-CCCCCCcceeeeecccc-cccccHHHHhcCCceeEEeCCC-Cccccccc-
Q 003753 482 SIKEQETASWKEAVRVSLWRSPSIDSLSP-TPPCSPRLLTLLVRYTM-IKEFENKFFKSMYALRVLDSSQ-NAKLSKLH- 557 (798)
Q Consensus 482 ~~~~~~~~~~~~l~~lsl~~~~~~~~l~~-~~~~~~~L~~L~l~~~~-~~~l~~~~~~~l~~Lr~L~L~~-~~~i~~lp- 557 (798)
...+|. ..++++.|.+.+| .+..++. .+..+++|++|++++|. +..+++..|.++++|++|++++ | .++.+|
T Consensus 23 l~~ip~--~~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDP 98 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECT
T ss_pred ccccCC--CCCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCH
Confidence 344454 3458999999999 9999886 46889999999999996 9999987799999999999998 7 899886
Q ss_pred ccccCCCCCCEEEcCCCCCcccCccccCCCccc---EEeCCCCCCcccccchhhcCCCCCc-cccccCCCCCCccCCCCC
Q 003753 558 VGEGELIDLQYLNLSNTNICELPIGIKSCTHLR---TLLLDGTENLKAIPVGMLSSLLSLR-VFSWVPTRYAGFNYGSSV 633 (798)
Q Consensus 558 ~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~---~L~l~~~~~l~~lp~~~i~~L~~L~-~L~l~~~~~~~~~~~~~~ 633 (798)
..+..+++|++|++++|.++.+|. +..+++|+ +|++++|..+..+|...+..+++|+ +|++++|.+..
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~------- 170 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS------- 170 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-------
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-------
Confidence 568899999999999999999996 88889988 9999999449999987789999999 99999876531
Q ss_pred CCcccccHHHhccCCCCCeeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeecc-CCCCCC--cccC
Q 003753 634 PGVTVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINC-SIKDLT--CIVY 710 (798)
Q Consensus 634 ~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~-~l~~l~--~l~~ 710 (798)
.....+ .. ++|+.|++++| .++.++ .+..
T Consensus 171 -----i~~~~~------------------------------------------~~-~~L~~L~L~~n~~l~~i~~~~~~~ 202 (239)
T 2xwt_C 171 -----VQGYAF------------------------------------------NG-TKLDAVYLNKNKYLTVIDKDAFGG 202 (239)
T ss_dssp -----ECTTTT------------------------------------------TT-CEEEEEECTTCTTCCEECTTTTTT
T ss_pred -----cCHhhc------------------------------------------CC-CCCCEEEcCCCCCcccCCHHHhhc
Confidence 000000 01 46888888888 487764 3677
Q ss_pred C-CCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccc
Q 003753 711 I-PRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPN 758 (798)
Q Consensus 711 l-~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 758 (798)
+ ++|+.|++++| .++.++. ..|++|+.|++.++..
T Consensus 203 l~~~L~~L~l~~N-~l~~l~~------------~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 203 VYSGPSLLDVSQT-SVTALPS------------KGLEHLKELIARNTWT 238 (239)
T ss_dssp CSBCCSEEECTTC-CCCCCCC------------TTCTTCSEEECTTC--
T ss_pred cccCCcEEECCCC-ccccCCh------------hHhccCceeeccCccC
Confidence 8 89999999884 4455421 2688899999888654
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=2.9e-17 Score=175.18 Aligned_cols=202 Identities=13% Similarity=0.146 Sum_probs=110.3
Q ss_pred CcceeeeecccccccccHHHHhcCCceeEEeCCCCccccc--ccccccCCCCCCEEEcCCCCCc-ccCccccCCCcccEE
Q 003753 516 PRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSK--LHVGEGELIDLQYLNLSNTNIC-ELPIGIKSCTHLRTL 592 (798)
Q Consensus 516 ~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~--lp~~i~~L~~L~~L~Ls~~~i~-~lp~~i~~l~~L~~L 592 (798)
++++.|++.+|.+...++. +..+++|++|++++| .++. +|..+..+++|++|++++|.+. ..|..+..+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 4555666666555554444 344566666666666 4542 4555556666666666666554 334455556666666
Q ss_pred eCCCCCCccc--ccchhhcCCCCCccccccCC-CCCCccCCCCCCCcccccHHHhccCC-CCCeeEEEEecc-cchhhhh
Q 003753 593 LLDGTENLKA--IPVGMLSSLLSLRVFSWVPT-RYAGFNYGSSVPGVTVLLLEELESLK-HLQEISVIILTI-DSLNKLK 667 (798)
Q Consensus 593 ~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~l~-~L~~L~l~~~~~-~~~~~l~ 667 (798)
++++|..+.. +|.. +..+++|++|++++| .+. +......+..++ +|+.|+++.+.. -....++
T Consensus 148 ~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~-----------~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~ 215 (336)
T 2ast_B 148 NLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFT-----------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215 (336)
T ss_dssp ECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCC-----------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH
T ss_pred ECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcC-----------hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH
Confidence 6666633442 3332 555666666666665 433 111233455566 666666654421 0001111
Q ss_pred hhhhhcccceeeeeccCchhhhccCceEEeeccC-CCC--CCcccCCCCccEEEeecCCchhhhhccccccCCCCccccc
Q 003753 668 SSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCS-IKD--LTCIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSM 744 (798)
Q Consensus 668 ~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~-l~~--l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~ 744 (798)
... ..+ ++|+.|++++|. ++. ++.+..+++|++|++++|..+... ....+..
T Consensus 216 ~~~---------------~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~---------~~~~l~~ 270 (336)
T 2ast_B 216 TLV---------------RRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE---------TLLELGE 270 (336)
T ss_dssp HHH---------------HHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG---------GGGGGGG
T ss_pred HHH---------------hhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH---------HHHHHhc
Confidence 111 123 677888888775 443 446677788888888877533221 0124556
Q ss_pred ccccceeecCCc
Q 003753 745 FLHLRQAYFFKL 756 (798)
Q Consensus 745 ~~~L~~L~L~~~ 756 (798)
+++|+.|++++|
T Consensus 271 ~~~L~~L~l~~~ 282 (336)
T 2ast_B 271 IPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEeccCc
Confidence 788888888876
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=1.7e-16 Score=169.92 Aligned_cols=120 Identities=16% Similarity=0.155 Sum_probs=72.6
Q ss_pred EEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccc-ccccc-cccCCCCCCE-EEcCC
Q 003753 497 VSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKL-SKLHV-GEGELIDLQY-LNLSN 573 (798)
Q Consensus 497 lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i-~~lp~-~i~~L~~L~~-L~Ls~ 573 (798)
+.-.++ .++++|..+ .+++++|+|++|.++.+|...|.++++|++|+|++| .+ +.+|. .+.++++|+. +.+++
T Consensus 14 v~C~~~-~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 14 FLCQES-KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEST-TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEecCC-CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhhhcccC
Confidence 334444 566666444 246677777777777777666677777777777777 54 33443 4566666554 44455
Q ss_pred CCCccc-CccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccC
Q 003753 574 TNICEL-PIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVP 621 (798)
Q Consensus 574 ~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~ 621 (798)
|++..+ |..+..+++|++|++++|. +..+|...+....++..|++.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEES
T ss_pred CcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhcc
Confidence 666666 3456667777777777765 6666654344555556666654
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=7.6e-16 Score=156.61 Aligned_cols=172 Identities=22% Similarity=0.312 Sum_probs=135.4
Q ss_pred ceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccc-ccccCCCCCCEEEc
Q 003753 493 EAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLH-VGEGELIDLQYLNL 571 (798)
Q Consensus 493 ~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~L 571 (798)
..+.+++.++ .+..+|..+. ++|+.|++++|.+..+++..|.++++|++|+|++| .++.++ ..+..+++|++|++
T Consensus 15 ~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEEC
Confidence 4567888888 8888886554 68999999999999998877999999999999999 888775 45789999999999
Q ss_pred CCCCCcccCc-cccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCC
Q 003753 572 SNTNICELPI-GIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHL 650 (798)
Q Consensus 572 s~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L 650 (798)
++|.+..+|. .+..+++|++|++++|. +..+|...+..+++|++|++++|.+.. .....+..+
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~------------~~~~~~~~l--- 154 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQS------------IPAGAFDKL--- 154 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC------------CCTTTTTTC---
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCc------------cCHHHcCcC---
Confidence 9999998864 56889999999999997 888888767889999999999887641 111122222
Q ss_pred CeeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCC--cccCCCCccEEEeecCC
Q 003753 651 QEISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLT--CIVYIPRLRFLFAKDCP 723 (798)
Q Consensus 651 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~--~l~~l~~L~~L~L~~~~ 723 (798)
++|+.|+|++|.++.++ .+..+++|+.|+|++|+
T Consensus 155 ---------------------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 155 ---------------------------------------TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ---------------------------------------TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ---------------------------------------cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 56777777777666654 36677777777777754
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=1.5e-16 Score=169.56 Aligned_cols=220 Identities=16% Similarity=0.163 Sum_probs=164.9
Q ss_pred ceeeeecccccccccHHHHhcC--CceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcc--cCccccCCCcccEEe
Q 003753 518 LLTLLVRYTMIKEFENKFFKSM--YALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICE--LPIGIKSCTHLRTLL 593 (798)
Q Consensus 518 L~~L~l~~~~~~~l~~~~~~~l--~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~--lp~~i~~l~~L~~L~ 593 (798)
++.|+++++.+. +..+..+ +++++|++++| .+...+..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 567777777554 3447777 89999999999 888887778899999999999998864 788899999999999
Q ss_pred CCCCCCcc-cccchhhcCCCCCccccccCC-CCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEe-cccchhhhhhhh
Q 003753 594 LDGTENLK-AIPVGMLSSLLSLRVFSWVPT-RYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIIL-TIDSLNKLKSSL 670 (798)
Q Consensus 594 l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~-~~~~~~~l~~~~ 670 (798)
+++|. +. ..|.. ++.+++|++|++++| .+. +......+.++++|+.|+++.+ ..... .+....
T Consensus 125 L~~~~-l~~~~~~~-l~~~~~L~~L~L~~~~~l~-----------~~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~ 190 (336)
T 2ast_B 125 LEGLR-LSDPIVNT-LAKNSNLVRLNLSGCSGFS-----------EFALQTLLSSCSRLDELNLSWCFDFTEK-HVQVAV 190 (336)
T ss_dssp CTTCB-CCHHHHHH-HTTCTTCSEEECTTCBSCC-----------HHHHHHHHHHCTTCCEEECCCCTTCCHH-HHHHHH
T ss_pred CcCcc-cCHHHHHH-HhcCCCCCEEECCCCCCCC-----------HHHHHHHHhcCCCCCEEcCCCCCCcChH-HHHHHH
Confidence 99997 55 45554 889999999999998 443 2223445788999999999876 44321 122211
Q ss_pred hhcccceeeeeccCchhhhc-cCceEEeecc--CCCC--CC-cccCCCCccEEEeecCCchhhhhccccccCCCCccccc
Q 003753 671 KLQSCIRRLVMGLPEAIFSQ-DLQDLSIINC--SIKD--LT-CIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSM 744 (798)
Q Consensus 671 ~~~~~L~~L~l~lp~~~lp~-~L~~L~L~~~--~l~~--l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~ 744 (798)
..+ + +|++|++++| .++. ++ .+..+++|++|++++|..++... ...+..
T Consensus 191 ---------------~~l-~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~---------~~~l~~ 245 (336)
T 2ast_B 191 ---------------AHV-SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC---------FQEFFQ 245 (336)
T ss_dssp ---------------HHS-CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG---------GGGGGG
T ss_pred ---------------Hhc-ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH---------HHHHhC
Confidence 223 6 9999999999 4542 33 46789999999999987554321 135678
Q ss_pred ccccceeecCCccchhhcc-cCCCCCCCcceeeeccC
Q 003753 745 FLHLRQAYFFKLPNLKNIC-HKAMAFPSLERIYVHGC 780 (798)
Q Consensus 745 ~~~L~~L~L~~~~~l~~i~-~~~~~~~~L~~L~l~~c 780 (798)
+++|+.|+|++|..+.... .....+++|+.|++++|
T Consensus 246 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 246 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 8999999999987433211 13456899999999887
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=7.7e-17 Score=183.81 Aligned_cols=169 Identities=21% Similarity=0.218 Sum_probs=94.3
Q ss_pred CCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCccccCCCcccEE
Q 003753 513 PCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKSCTHLRTL 592 (798)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L 592 (798)
..+++|+.|++++|.+..++. |..+++|+.|+|++| .+..+|. +..+++|++|+|++|.+..+| .+..+++|++|
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred hcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence 345555555555555555542 555566666666665 5555544 555556666666666555554 45555666666
Q ss_pred eCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecccchhhhhhhhhh
Q 003753 593 LLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKL 672 (798)
Q Consensus 593 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~ 672 (798)
+|++|. +..+|. +..|++|+.|++++|.+. .+..+..+++|+.|+++.+....+..+
T Consensus 115 ~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~--------------~l~~l~~l~~L~~L~Ls~N~l~~~~~l------ 171 (605)
T 1m9s_A 115 SLEHNG-ISDING--LVHLPQLESLYLGNNKIT--------------DITVLSRLTKLDTLSLEDNQISDIVPL------ 171 (605)
T ss_dssp ECTTSC-CCCCGG--GGGCTTCSEEECCSSCCC--------------CCGGGGSCTTCSEEECCSSCCCCCGGG------
T ss_pred EecCCC-CCCCcc--ccCCCccCEEECCCCccC--------------CchhhcccCCCCEEECcCCcCCCchhh------
Confidence 666554 554442 555566666666555543 113455555555555544433322220
Q ss_pred cccceeeeeccCchhhhccCceEEeeccCCCCCCcccCCCCccEEEeecCC
Q 003753 673 QSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLTCIVYIPRLRFLFAKDCP 723 (798)
Q Consensus 673 ~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~ 723 (798)
..+ ++|+.|+|++|.++.++.+..+++|+.|+|++|+
T Consensus 172 -------------~~l-~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 172 -------------AGL-TKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp -------------TTC-TTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEE
T ss_pred -------------ccC-CCCCEEECcCCCCCCChHHccCCCCCEEEccCCc
Confidence 112 6677777777766666666777777777777654
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=3e-16 Score=165.11 Aligned_cols=131 Identities=15% Similarity=0.095 Sum_probs=87.8
Q ss_pred hceeeEEeecCCCCC-CCCCCC--CCCCcceeeeeccccccc----ccHHHHhcCCceeEEeCCCCccccccc-ccccCC
Q 003753 492 KEAVRVSLWRSPSID-SLSPTP--PCSPRLLTLLVRYTMIKE----FENKFFKSMYALRVLDSSQNAKLSKLH-VGEGEL 563 (798)
Q Consensus 492 ~~l~~lsl~~~~~~~-~l~~~~--~~~~~L~~L~l~~~~~~~----l~~~~~~~l~~Lr~L~L~~~~~i~~lp-~~i~~L 563 (798)
++++.|.+.+| .+. ..|..+ ..+++|++|++++|.+.. ++...+..+++|++|+|++| .+..+| ..++.+
T Consensus 91 ~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCC
T ss_pred CceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccC
Confidence 45778888777 554 344344 667788888888886664 22233556778888888888 776664 567778
Q ss_pred CCCCEEEcCCCCCcc---cC--ccccCCCcccEEeCCCCCCcccccch---hhcCCCCCccccccCCCCC
Q 003753 564 IDLQYLNLSNTNICE---LP--IGIKSCTHLRTLLLDGTENLKAIPVG---MLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 564 ~~L~~L~Ls~~~i~~---lp--~~i~~l~~L~~L~l~~~~~l~~lp~~---~i~~L~~L~~L~l~~~~~~ 625 (798)
++|++|++++|++.. ++ ..+..+++|++|++++|. ++.+|.. .++.+++|++|++++|.+.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~ 237 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLR 237 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCC
Confidence 888888888887643 32 233677788888888776 6655542 2456778888888777664
No 91
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.64 E-value=2e-14 Score=153.99 Aligned_cols=288 Identities=15% Similarity=0.082 Sum_probs=177.4
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCcc------CHHHHHHHHH
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTEL------NIEKIQDVIR 204 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~------~~~~~~~~i~ 204 (798)
.++||++++++|.+++..+ +++.|+|++|+|||||++++++.. . .+|+.+.... +...+...+.
T Consensus 13 ~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (350)
T 2qen_A 13 DIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKELQ 82 (350)
T ss_dssp GSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHHHH
Confidence 6999999999999998764 799999999999999999998764 1 6788765443 5667777777
Q ss_pred HHcCCC--------------CCCCccccCCHHHHHHHHHHHhcC-CcEEEEEecccCccc--------ccccC---CCCC
Q 003753 205 SRLGID--------------PDGDKWKNRDDQGRAAEIFRRLSN-KKFALLLDDLRERIE--------LSEAG---VPVQ 258 (798)
Q Consensus 205 ~~l~~~--------------~~~~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~~~~~--------~~~~~---~p~~ 258 (798)
+.+... .........+..+....+.+.... ++++||+||++...+ +.... ....
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~ 162 (350)
T 2qen_A 83 STISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL 162 (350)
T ss_dssp HHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhc
Confidence 665420 000001123455566666665543 499999999987432 11110 0123
Q ss_pred CCcEEEEeCCchHHhhh-----------cC-CCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc
Q 003753 259 NASKIVFTTIFEEVCSS-----------MS-VDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP 326 (798)
Q Consensus 259 ~gs~iivTTR~~~v~~~-----------~~-~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 326 (798)
.+.++|+|++...+... .+ ....+.+.+|+.+|+.+++.+.+........ .+.+..|++.|+|+|
T Consensus 163 ~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~tgG~P 239 (350)
T 2qen_A 163 PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVELLDGIP 239 (350)
T ss_dssp TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHHTTCH
T ss_pred CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCH
Confidence 57889999887653211 11 1246899999999999999876533221112 346789999999999
Q ss_pred hHHHHHHHHhcCCCChhHHH-HHHHHHhcCCCCCCCcccchhhhhhhhhcCC---CchhHhHHHHhhcCCCCCceecHHH
Q 003753 327 LALVTIGSAMASRRDPDNWR-YAIEELQRYPSGFESIGTHVFPLLKFSYDRL---TSETHKTCFLYGSLFPRNQIIMKDE 402 (798)
Q Consensus 327 Lai~~~g~~l~~~~~~~~w~-~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~~k~cfl~~s~fp~~~~i~~~~ 402 (798)
+++..++..+....+...+. ...+. +...+.-.+..+ ++. .+..+..+|. .. ++...
T Consensus 240 ~~l~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~l~~~~~~-~~~~l~~la~--g~--~~~~~ 300 (350)
T 2qen_A 240 GWLVVFGVEYLRNGDFGRAMKRTLEV--------------AKGLIMGELEELRRRSPR-YVDILRAIAL--GY--NRWSL 300 (350)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH--------------HHHHHHHHHHHHHHHCHH-HHHHHHHHHT--TC--CSHHH
T ss_pred HHHHHHHHHHhccccHhHHHHHHHHH--------------HHHHHHHHHHHHHhCChh-HHHHHHHHHh--CC--CCHHH
Confidence 99999987653222222221 11111 111111112222 554 7888888887 21 34444
Q ss_pred HHHHHHhcCCCcCCccHHHHHHhHHHHHHHHHHcccccccccCCCcCcEEE-ccchHHHHH
Q 003753 403 LIELWIGEGLLRDSHNIAVARREGKFILESLKLACLLEEVEVNNSEDFVKM-HNMLRDMAL 462 (798)
Q Consensus 403 li~~W~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~m-Hdlv~d~a~ 462 (798)
+.....+.. - .. .......+++.|.+.++|.... ..|.+ |++++++.+
T Consensus 301 l~~~~~~~~-~-~~-----~~~~~~~~l~~L~~~gli~~~~-----~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 301 IRDYLAVKG-T-KI-----PEPRLYALLENLKKMNWIVEED-----NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHTT-C-CC-----CHHHHHHHHHHHHHTTSEEEET-----TEEEESSHHHHHHHT
T ss_pred HHHHHHHHh-C-CC-----CHHHHHHHHHHHHhCCCEEecC-----CEEEEecHHHHHHHc
Confidence 443322110 0 10 1234567899999999998752 34555 667777653
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=3.9e-16 Score=167.17 Aligned_cols=225 Identities=13% Similarity=0.077 Sum_probs=144.6
Q ss_pred eeeeecccccccccHHHHhcCCceeEEeCCCCcccccccc-cccCCCCCCEEEcCCCCCc-ccCc-cccCCCcccEEeCC
Q 003753 519 LTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHV-GEGELIDLQYLNLSNTNIC-ELPI-GIKSCTHLRTLLLD 595 (798)
Q Consensus 519 ~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~Ls~~~i~-~lp~-~i~~l~~L~~L~l~ 595 (798)
++++.+++.++.+|..+ .+++++|+|++| .|+.+|. .+.++++|++|+|++|++. .+|. .+.++++|+++...
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 67888888999999863 468999999999 9999986 5899999999999999874 4654 57889998875554
Q ss_pred CCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecccchhhhhhhhhhccc
Q 003753 596 GTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQSC 675 (798)
Q Consensus 596 ~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ 675 (798)
++..+..+|++.+..+++|++|++++|.+... .........++..|++.. ...+..+.....
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~------------~~~~~~~~~~l~~l~l~~--~~~i~~l~~~~f---- 149 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHL------------PDVHKIHSLQKVLLDIQD--NINIHTIERNSF---- 149 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSC------------CCCTTCCBSSCEEEEEES--CTTCCEECTTSS----
T ss_pred cCCcccccCchhhhhccccccccccccccccC------------Cchhhcccchhhhhhhcc--ccccccccccch----
Confidence 43349999887799999999999999887521 111122333455555532 222222211100
Q ss_pred ceeeeeccCchhhhccCceEEeeccCCCCCCc-ccCCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecC
Q 003753 676 IRRLVMGLPEAIFSQDLQDLSIINCSIKDLTC-IVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFF 754 (798)
Q Consensus 676 L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~~-l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~ 754 (798)
..++..++.|++++|+++.++. .....+|+.|++++++.++.++. ..+..+++|+.|+|+
T Consensus 150 ----------~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~---------~~f~~l~~L~~LdLs 210 (350)
T 4ay9_X 150 ----------VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN---------DVFHGASGPVILDIS 210 (350)
T ss_dssp ----------TTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCT---------TTTTTEECCSEEECT
T ss_pred ----------hhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCH---------HHhccCcccchhhcC
Confidence 0011345666666666655542 33445666666666565555532 234556666666666
Q ss_pred CccchhhcccCCCCCCCcceeeeccCCCCCCCC
Q 003753 755 KLPNLKNICHKAMAFPSLERIYVHGCPSLRKLP 787 (798)
Q Consensus 755 ~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~lp 787 (798)
+ +.++.++. ..|.+|+.|.+.+|.+|+.+|
T Consensus 211 ~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 211 R-TRIHSLPS--YGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp T-SCCCCCCS--SSCTTCCEEECTTCTTCCCCC
T ss_pred C-CCcCccCh--hhhccchHhhhccCCCcCcCC
Confidence 6 35555554 235566666666666666666
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=1.4e-15 Score=158.11 Aligned_cols=175 Identities=20% Similarity=0.260 Sum_probs=149.1
Q ss_pred hhchhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCC
Q 003753 488 TASWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQ 567 (798)
Q Consensus 488 ~~~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~ 567 (798)
...+++++.+.+.++ .+..++ .+..+++|++|++++|.+..+++ +.++++|++|++++| .++.+|. +..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCC
T ss_pred hhhcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCChh-hccCCCCC
Confidence 345678999999999 999998 68889999999999999999987 899999999999999 8998875 99999999
Q ss_pred EEEcCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccC
Q 003753 568 YLNLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESL 647 (798)
Q Consensus 568 ~L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l 647 (798)
+|++++|.+..++ .+..+++|++|++++|. +..++ . ++.+++|++|++++|.+.. . ..+..+
T Consensus 116 ~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~-l~~l~~L~~L~L~~N~l~~------------~--~~l~~l 177 (291)
T 1h6t_A 116 SLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-V-LSRLTKLDTLSLEDNQISD------------I--VPLAGL 177 (291)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG-G-GGGCTTCSEEECCSSCCCC------------C--GGGTTC
T ss_pred EEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcch-h-hccCCCCCEEEccCCcccc------------c--hhhcCC
Confidence 9999999999885 78999999999999997 88884 3 8999999999999998751 1 128889
Q ss_pred CCCCeeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCC
Q 003753 648 KHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLT 706 (798)
Q Consensus 648 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~ 706 (798)
++|+.|+++.+....+..+ ..+ ++|+.|++++|.+...+
T Consensus 178 ~~L~~L~L~~N~i~~l~~l-------------------~~l-~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 178 TKLQNLYLSKNHISDLRAL-------------------AGL-KNLDVLELFSQECLNKP 216 (291)
T ss_dssp TTCCEEECCSSCCCBCGGG-------------------TTC-TTCSEEEEEEEEEECCC
T ss_pred CccCEEECCCCcCCCChhh-------------------ccC-CCCCEEECcCCcccCCc
Confidence 9999999987766554332 123 89999999999766543
No 94
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.62 E-value=2.6e-14 Score=156.87 Aligned_cols=304 Identities=13% Similarity=0.094 Sum_probs=183.3
Q ss_pred cccchhHHHHHHHHHh-hc------CCceEEEE--EecCCchHHHHHHHHHHHhhhh--cCCCC-eEEEEEcCCccCHHH
Q 003753 131 NIVGIESRLSEVWRYI-ED------DGVKIIGL--YGVRGVGKSTLLKQLNDTFSDM--SHKFG-AVIMVKASTELNIEK 198 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L-~~------~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~--~~~f~-~~~wv~vs~~~~~~~ 198 (798)
.++||+.+++++.+++ .. .....+.| +|++|+||||||+.+++..... ...++ .++|+.+....+...
T Consensus 23 ~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (412)
T 1w5s_A 23 ELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYT 102 (412)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHH
T ss_pred CCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHH
Confidence 6999999999999988 42 24567777 9999999999999999876321 01233 367888777778899
Q ss_pred HHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhc--CCcEEEEEecccCccc--------cccc-CCC---C--C--CC
Q 003753 199 IQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLS--NKKFALLLDDLRERIE--------LSEA-GVP---V--Q--NA 260 (798)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~~--------~~~~-~~p---~--~--~g 260 (798)
++..|+.+++..... ...+.......+.+.+. +++++|||||++.... +..+ ... . + .+
T Consensus 103 ~~~~l~~~l~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 103 ILSLIVRQTGYPIQV---RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHTCCCCC---TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHhCCCCCC---CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 999999999765321 22345566667777665 6899999999986421 1111 111 1 2 34
Q ss_pred cEEEEeCCchHHhhhc---------CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhC------CC
Q 003753 261 SKIVFTTIFEEVCSSM---------SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCG------GL 325 (798)
Q Consensus 261 s~iivTTR~~~v~~~~---------~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~------gl 325 (798)
..+|+||+...+...+ .....+.+++++.++++++|...+...... ..--.+....|++.|+ |.
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD-TVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT-TSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC-CCCChHHHHHHHHHHHHhccCCCc
Confidence 4578888765532111 112238999999999999998764321100 0011456788999999 99
Q ss_pred chHHHHHHHHh---c--CC---CChhHHHHHHHHHhcCCCCCCCcccchhhhhhhhhcCCCchhHhHHHHhhcCCC--CC
Q 003753 326 PLALVTIGSAM---A--SR---RDPDNWRYAIEELQRYPSGFESIGTHVFPLLKFSYDRLTSETHKTCFLYGSLFP--RN 395 (798)
Q Consensus 326 PLai~~~g~~l---~--~~---~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp--~~ 395 (798)
|..+..+.... . .. -+...+..+...... ...+.-++..||++ .+.++..++.+. .+
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSIH-ELIILRLIAEATLGGM 325 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCHH-HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCC
Confidence 97655554321 1 11 122333333322110 22344567889986 888888887643 22
Q ss_pred ceecHHHHHHHHH--h---cCCCcCCccHHHHHHhHHHHHHHHHHcccccccccC-CCcCcEEEccch
Q 003753 396 QIIMKDELIELWI--G---EGLLRDSHNIAVARREGKFILESLKLACLLEEVEVN-NSEDFVKMHNML 457 (798)
Q Consensus 396 ~~i~~~~li~~W~--a---~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~-~~~~~~~mHdlv 457 (798)
..++...+...+. + .|. .+. .......+++.|...++|.....+ +....|++|++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 326 EWINAGLLRQRYEDASLTMYNV-KPR-----GYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp SSBCHHHHHHHHHHHHHHHSCC-CCC-----CHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CCccHHHHHHHHHHHHHhhcCC-CCC-----CHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 3455555444331 1 121 110 123456789999999999876432 234556667665
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=6.5e-16 Score=162.53 Aligned_cols=221 Identities=14% Similarity=0.082 Sum_probs=158.9
Q ss_pred Ccceeeeecccccc-----cccHHHHhcCCceeEEeCCCCcccc-cccccc--cCCCCCCEEEcCCCCCccc-C----cc
Q 003753 516 PRLLTLLVRYTMIK-----EFENKFFKSMYALRVLDSSQNAKLS-KLHVGE--GELIDLQYLNLSNTNICEL-P----IG 582 (798)
Q Consensus 516 ~~L~~L~l~~~~~~-----~l~~~~~~~l~~Lr~L~L~~~~~i~-~lp~~i--~~L~~L~~L~Ls~~~i~~l-p----~~ 582 (798)
..++.|.+.++.+. .+.. +..+++|++|++++| .+. ..|..+ ..+++|++|++++|.+... | ..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALR--VLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHH--HHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred cceeEEEEeCCcCCHHHHHHHHH--hcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 34666777766443 2222 234577999999999 776 457777 8999999999999988753 2 34
Q ss_pred ccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccH---HHhccCCCCCeeEEEEec
Q 003753 583 IKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLL---EELESLKHLQEISVIILT 659 (798)
Q Consensus 583 i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~---~~L~~l~~L~~L~l~~~~ 659 (798)
+..+++|++|++++|. +..++...++.+++|++|++++|.+. ....+ ..+..+++|+.|+++.+.
T Consensus 141 ~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~~~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGL-----------GERGLMAALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp TTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTC-----------HHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred hhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCc-----------cchhhhHHHhhhcCCCCCEEECCCCC
Confidence 5678999999999998 77777666889999999999998764 11111 123578899999998877
Q ss_pred ccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCC-C-cccCC---CCccEEEeecCCchhhhhccccc
Q 003753 660 IDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDL-T-CIVYI---PRLRFLFAKDCPSLEEIIASDLR 734 (798)
Q Consensus 660 ~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l-~-~l~~l---~~L~~L~L~~~~~l~~l~~~~~~ 734 (798)
...+........ ..+ ++|++|+|++|.++.. | .+..+ ++|++|+|++|. ++.++.
T Consensus 209 l~~l~~~~~~l~--------------~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~---- 268 (310)
T 4glp_A 209 METPTGVCAALA--------------AAG-VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPK---- 268 (310)
T ss_dssp CCCHHHHHHHHH--------------HHT-CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCS----
T ss_pred CCchHHHHHHHH--------------hcC-CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhh----
Confidence 665554432210 123 8999999999987765 3 34444 799999999854 555532
Q ss_pred cCCCCcccccccccceeecCCccchhhcccCCCCCCCcceeeeccCC
Q 003753 735 FEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPSLERIYVHGCP 781 (798)
Q Consensus 735 ~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~L~~L~l~~c~ 781 (798)
.+ +++|+.|+|++ +.+..++. ...+++|+.|++++++
T Consensus 269 ------~~--~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 269 ------GL--PAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp ------CC--CSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred ------hh--cCCCCEEECCC-CcCCCCch-hhhCCCccEEECcCCC
Confidence 22 48999999999 56777655 5678889999888864
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=4.6e-16 Score=177.42 Aligned_cols=189 Identities=15% Similarity=0.224 Sum_probs=154.6
Q ss_pred CCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCccccCCCcccEEeC
Q 003753 515 SPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKSCTHLRTLLL 594 (798)
Q Consensus 515 ~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~l 594 (798)
+..+..+.+..+.+..+.. +..+.+|+.|++++| .+..+| .+..|++|++|+|++|.+..+|. +..+++|++|+|
T Consensus 20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~L 94 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEEC
T ss_pred HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEEC
Confidence 3345555556566665554 578899999999999 899987 59999999999999999999986 999999999999
Q ss_pred CCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecccchhhhhhhhhhcc
Q 003753 595 DGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQS 674 (798)
Q Consensus 595 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~ 674 (798)
++|. +..+|. +..+++|++|++++|.+. .+..+..+++|+.|+++.+....+..+
T Consensus 95 s~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~--------------~l~~l~~l~~L~~L~Ls~N~l~~l~~l-------- 149 (605)
T 1m9s_A 95 DENK-IKDLSS--LKDLKKLKSLSLEHNGIS--------------DINGLVHLPQLESLYLGNNKITDITVL-------- 149 (605)
T ss_dssp CSSC-CCCCTT--STTCTTCCEEECTTSCCC--------------CCGGGGGCTTCSEEECCSSCCCCCGGG--------
T ss_pred cCCC-CCCChh--hccCCCCCEEEecCCCCC--------------CCccccCCCccCEEECCCCccCCchhh--------
Confidence 9997 888873 899999999999999875 135688899999999987766554211
Q ss_pred cceeeeeccCchhhhccCceEEeeccCCCCCCcccCCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecC
Q 003753 675 CIRRLVMGLPEAIFSQDLQDLSIINCSIKDLTCIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFF 754 (798)
Q Consensus 675 ~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~ 754 (798)
..+ ++|+.|+|++|.++.++++..+++|+.|+|++|. +..+ ..+..+++|+.|+|+
T Consensus 150 -----------~~l-~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~-i~~l-----------~~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 150 -----------SRL-TKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH-ISDL-----------RALAGLKNLDVLELF 205 (605)
T ss_dssp -----------GSC-TTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCBC-----------GGGTTCTTCSEEECC
T ss_pred -----------ccc-CCCCEEECcCCcCCCchhhccCCCCCEEECcCCC-CCCC-----------hHHccCCCCCEEEcc
Confidence 123 8999999999999888779999999999999964 4443 356789999999999
Q ss_pred Ccc
Q 003753 755 KLP 757 (798)
Q Consensus 755 ~~~ 757 (798)
+|+
T Consensus 206 ~N~ 208 (605)
T 1m9s_A 206 SQE 208 (605)
T ss_dssp SEE
T ss_pred CCc
Confidence 964
No 97
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.61 E-value=1.3e-16 Score=178.01 Aligned_cols=130 Identities=17% Similarity=0.158 Sum_probs=72.8
Q ss_pred hhceeeEEeecCCCCC-----CCCCCCCCCCcceeeeeccccccccc-HHHHhcCC----ceeEEeCCCCcccc-----c
Q 003753 491 WKEAVRVSLWRSPSID-----SLSPTPPCSPRLLTLLVRYTMIKEFE-NKFFKSMY----ALRVLDSSQNAKLS-----K 555 (798)
Q Consensus 491 ~~~l~~lsl~~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~l~----~Lr~L~L~~~~~i~-----~ 555 (798)
.++++.+++.++ .+. .++..+..+++|++|++++|.+.... ..++..++ +|++|+|++| .++ .
T Consensus 27 ~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~ 104 (461)
T 1z7x_W 27 LQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGV 104 (461)
T ss_dssp HTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHH
T ss_pred cCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHHH
Confidence 456677777766 554 23333455667777777776655432 23233444 5777777777 565 3
Q ss_pred ccccccCCCCCCEEEcCCCCCccc-Ccc-----ccCCCcccEEeCCCCCCccc-----ccchhhcCCCCCccccccCCCC
Q 003753 556 LHVGEGELIDLQYLNLSNTNICEL-PIG-----IKSCTHLRTLLLDGTENLKA-----IPVGMLSSLLSLRVFSWVPTRY 624 (798)
Q Consensus 556 lp~~i~~L~~L~~L~Ls~~~i~~l-p~~-----i~~l~~L~~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~ 624 (798)
+|..+..+++|++|++++|.+... +.. ....++|++|++++|. +.. ++.. +..+++|++|++++|.+
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASV-LRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHH-HHHCTTCCEEECCSSBC
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHH-HhhCCCCCEEECcCCCc
Confidence 466666677777777777765432 111 1124456666666664 443 2222 45566666666666654
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.60 E-value=8.4e-16 Score=167.13 Aligned_cols=246 Identities=16% Similarity=0.123 Sum_probs=167.0
Q ss_pred cceeeeecccccccccHHHHhcCCceeEEeCCCCccccc-----ccccccCCCCCCEEEcCCCCCcc----cCccc----
Q 003753 517 RLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSK-----LHVGEGELIDLQYLNLSNTNICE----LPIGI---- 583 (798)
Q Consensus 517 ~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~-----lp~~i~~L~~L~~L~Ls~~~i~~----lp~~i---- 583 (798)
.|+...+....+..++.. +..+++|++|+|++| .++. ++..+..+++|++|+|++|.+.. +|..+
T Consensus 10 ~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~ 87 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAV-LLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87 (386)
T ss_dssp CCEESSCCSHHHHTTSHH-HHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHH-HhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH
Confidence 444445555566677766 888999999999999 8874 44567889999999999986553 34444
Q ss_pred ---cCCCcccEEeCCCCCCccc-----ccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccC--------
Q 003753 584 ---KSCTHLRTLLLDGTENLKA-----IPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESL-------- 647 (798)
Q Consensus 584 ---~~l~~L~~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l-------- 647 (798)
..+++|++|++++|. +.. +|.. +..+++|++|++++|.+.... .......+..+
T Consensus 88 ~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~--------~~~l~~~l~~l~~~~~~~~ 157 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNA-FGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQA--------GAKIARALQELAVNKKAKN 157 (386)
T ss_dssp HHHTTCTTCCEEECCSCC-CCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHH--------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhCCcccEEECCCCc-CCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHH--------HHHHHHHHHHHhhhhhccc
Confidence 789999999999997 655 6665 889999999999999864100 00112234444
Q ss_pred -CCCCeeEEEEeccc--chhhhhhhhhhcccceeeee---ccCc-----------hhhhccCceEEeeccCCC-----CC
Q 003753 648 -KHLQEISVIILTID--SLNKLKSSLKLQSCIRRLVM---GLPE-----------AIFSQDLQDLSIINCSIK-----DL 705 (798)
Q Consensus 648 -~~L~~L~l~~~~~~--~~~~l~~~~~~~~~L~~L~l---~lp~-----------~~lp~~L~~L~L~~~~l~-----~l 705 (798)
++|+.|+++.+... .+..+......+++|+.|.+ .+.. ..+ ++|+.|+|++|.++ .+
T Consensus 158 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l 236 (386)
T 2ca6_A 158 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSAL 236 (386)
T ss_dssp CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHH
T ss_pred CCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC-CCccEEECcCCCCCcHHHHHH
Confidence 89999999877654 44444455555567888877 2221 244 67888888888763 23
Q ss_pred C-cccCCCCccEEEeecCCchhhhhccccccCCCCccc--ccccccceeecCCccchh----hcccCC-CCCCCcceeee
Q 003753 706 T-CIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENL--SMFLHLRQAYFFKLPNLK----NICHKA-MAFPSLERIYV 777 (798)
Q Consensus 706 ~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~--~~~~~L~~L~L~~~~~l~----~i~~~~-~~~~~L~~L~l 777 (798)
+ .+..+++|++|+|++|.. ..... ...+..+ +.+++|+.|+|++|.--. .++... ..+|+|++|++
T Consensus 237 ~~~l~~~~~L~~L~L~~n~i-~~~~~-----~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCLL-SARGA-----AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHGGGCTTCCEEECTTCCC-CHHHH-----HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHccCCCcCEEECCCCCC-chhhH-----HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 3 467888888888888653 32200 0001122 337889999998864332 255544 45788888888
Q ss_pred ccCC
Q 003753 778 HGCP 781 (798)
Q Consensus 778 ~~c~ 781 (798)
++|+
T Consensus 311 ~~N~ 314 (386)
T 2ca6_A 311 NGNR 314 (386)
T ss_dssp TTSB
T ss_pred cCCc
Confidence 8874
No 99
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.60 E-value=3.5e-14 Score=152.56 Aligned_cols=287 Identities=13% Similarity=0.109 Sum_probs=169.9
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc-----cCHHHHHHHHHH
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE-----LNIEKIQDVIRS 205 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-----~~~~~~~~~i~~ 205 (798)
.++||++++++|.+ +.. +++.|+|++|+|||||++++++.. .. ..+|+.+... .+.......+.+
T Consensus 14 ~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (357)
T 2fna_A 14 DFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL---NL---PYIYLDLRKFEERNYISYKDFLLELQK 83 (357)
T ss_dssp GSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH---TC---CEEEEEGGGGTTCSCCCHHHHHHHHHH
T ss_pred HhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc---CC---CEEEEEchhhccccCCCHHHHHHHHHH
Confidence 69999999999999 765 699999999999999999999876 22 2578887643 344555555444
Q ss_pred HcC------------------CCCCCC--cc-----ccCCHHHHHHHHHHHhcCCcEEEEEecccCcc-----cccccCC
Q 003753 206 RLG------------------IDPDGD--KW-----KNRDDQGRAAEIFRRLSNKKFALLLDDLRERI-----ELSEAGV 255 (798)
Q Consensus 206 ~l~------------------~~~~~~--~~-----~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~-----~~~~~~~ 255 (798)
.+. .+..+. .. ...........+.+.-. ++++|||||++... ++.....
T Consensus 84 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~ 162 (357)
T 2fna_A 84 EINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALA 162 (357)
T ss_dssp HHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHH
T ss_pred HHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHH
Confidence 331 000000 00 01234444444443322 49999999997643 2221110
Q ss_pred ---CCCCCcEEEEeCCchHHhhh----------c-CC-CcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHH
Q 003753 256 ---PVQNASKIVFTTIFEEVCSS----------M-SV-DWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVAN 320 (798)
Q Consensus 256 ---p~~~gs~iivTTR~~~v~~~----------~-~~-~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~ 320 (798)
....+.++|+|+|....... . +. ...+.+.+|+.+|+.+++...+....... .. ...|++
T Consensus 163 ~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~----~~~i~~ 237 (357)
T 2fna_A 163 YAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF-KD----YEVVYE 237 (357)
T ss_dssp HHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC-CC----HHHHHH
T ss_pred HHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC-Cc----HHHHHH
Confidence 02247899999997653211 1 11 25689999999999999988653221111 11 278999
Q ss_pred HhCCCchHHHHHHHHhcCCCChhHHHH-HHHHHhcCCCCCCCcccchhhhhh-hhh--cCCCchhHhHHHHhhcCCCCCc
Q 003753 321 MCGGLPLALVTIGSAMASRRDPDNWRY-AIEELQRYPSGFESIGTHVFPLLK-FSY--DRLTSETHKTCFLYGSLFPRNQ 396 (798)
Q Consensus 321 ~c~glPLai~~~g~~l~~~~~~~~w~~-~~~~l~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~~k~cfl~~s~fp~~~ 396 (798)
.|+|+|+++..++..+....+...|.. +.+.... .+...+. +.+ ..|++. .+..+..+|.- .
T Consensus 238 ~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~l~~~-~~~~l~~la~g---~ 303 (357)
T 2fna_A 238 KIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK----------LILKEFENFLHGREIARKR-YLNIMRTLSKC---G 303 (357)
T ss_dssp HHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----------HHHHHHHHHHTTCGGGHHH-HHHHHHHHTTC---B
T ss_pred HhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH----------HHHHHHHHHhhccccccHH-HHHHHHHHHcC---C
Confidence 999999999999887653333333321 1111000 0111111 111 157775 88888888872 1
Q ss_pred eecHHHHHHHHH-hcCCCcCCccHHHHHHhHHHHHHHHHHcccccccccCCCcCcEEE-ccchHHHH
Q 003753 397 IIMKDELIELWI-GEGLLRDSHNIAVARREGKFILESLKLACLLEEVEVNNSEDFVKM-HNMLRDMA 461 (798)
Q Consensus 397 ~i~~~~li~~W~-a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~m-Hdlv~d~a 461 (798)
+...+....- ..|. + ........+++.|.+.++|.... ..|++ |++++++.
T Consensus 304 --~~~~l~~~~~~~~g~--~-----~~~~~~~~~L~~L~~~gli~~~~-----~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 --KWSDVKRALELEEGI--E-----ISDSEIYNYLTQLTKHSWIIKEG-----EKYCPSEPLISLAF 356 (357)
T ss_dssp --CHHHHHHHHHHHHCS--C-----CCHHHHHHHHHHHHHTTSEEESS-----SCEEESSHHHHHHT
T ss_pred --CHHHHHHHHHHhcCC--C-----CCHHHHHHHHHHHHhCCCEEecC-----CEEEecCHHHHHhh
Confidence 3333332110 1121 0 01234567899999999998752 34664 67887763
No 100
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.60 E-value=2e-16 Score=176.67 Aligned_cols=264 Identities=19% Similarity=0.159 Sum_probs=156.2
Q ss_pred ceeeEEeecCCCCC-----CCCCCCCCCCcceeeeecccccccccHHH-----HhcCCceeEEeCCCCccccc-----cc
Q 003753 493 EAVRVSLWRSPSID-----SLSPTPPCSPRLLTLLVRYTMIKEFENKF-----FKSMYALRVLDSSQNAKLSK-----LH 557 (798)
Q Consensus 493 ~l~~lsl~~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~l~~~~-----~~~l~~Lr~L~L~~~~~i~~-----lp 557 (798)
+++.|++.+| .+. .++..+..+++|++|++++|.+....... +...++|++|++++| .++. ++
T Consensus 86 ~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~ 163 (461)
T 1z7x_W 86 KIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLA 163 (461)
T ss_dssp CCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHH
T ss_pred ceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHH
Confidence 5777777777 665 23445567778888888877665432221 223456888888877 6663 34
Q ss_pred ccccCCCCCCEEEcCCCCCccc-Ccccc-----CCCcccEEeCCCCCCccc-----ccchhhcCCCCCccccccCCCCCC
Q 003753 558 VGEGELIDLQYLNLSNTNICEL-PIGIK-----SCTHLRTLLLDGTENLKA-----IPVGMLSSLLSLRVFSWVPTRYAG 626 (798)
Q Consensus 558 ~~i~~L~~L~~L~Ls~~~i~~l-p~~i~-----~l~~L~~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~ 626 (798)
..+..+++|++|++++|.+... +..+. .+++|++|++++|. +.. ++.. +..+++|++|++++|.+.
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~- 240 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGI-VASKASLRELALGSNKLG- 240 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHH-HHHCTTCCEEECCSSBCH-
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHH-HHhCCCccEEeccCCcCC-
Confidence 5566677778888877776532 11221 24577777777775 554 3443 667777777777777653
Q ss_pred ccCCCCCCCcccccHHHh-----ccCCCCCeeEEEEecccch--hhhhhhhhhcccceeeeec---cCc-----------
Q 003753 627 FNYGSSVPGVTVLLLEEL-----ESLKHLQEISVIILTIDSL--NKLKSSLKLQSCIRRLVMG---LPE----------- 685 (798)
Q Consensus 627 ~~~~~~~~~~~~~~~~~L-----~~l~~L~~L~l~~~~~~~~--~~l~~~~~~~~~L~~L~l~---lp~----------- 685 (798)
...+..+ ..+++|+.|+++.+..... ..++.....+++|+.|++. +..
T Consensus 241 -----------~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 309 (461)
T 1z7x_W 241 -----------DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL 309 (461)
T ss_dssp -----------HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT
T ss_pred -----------hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc
Confidence 2222222 2467777777765543321 1233333344567777661 111
Q ss_pred hhhhccCceEEeeccCCCCC------CcccCCCCccEEEeecCCchhhhhccccccCCCCcccc-cccccceeecCCccc
Q 003753 686 AIFSQDLQDLSIINCSIKDL------TCIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLS-MFLHLRQAYFFKLPN 758 (798)
Q Consensus 686 ~~lp~~L~~L~L~~~~l~~l------~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~ 758 (798)
... ++|++|++++|.++.. .++..+++|++|+|++|. +.+..... ....+. ..++|+.|+|++|.
T Consensus 310 ~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~-----l~~~l~~~~~~L~~L~L~~n~- 381 (461)
T 1z7x_W 310 EPG-CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRE-----LCQGLGQPGSVLRVLWLADCD- 381 (461)
T ss_dssp STT-CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHH-----HHHHHTSTTCCCCEEECTTSC-
T ss_pred cCC-ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHH-----HHHHHcCCCCceEEEECCCCC-
Confidence 111 5888888888866643 235677888888888864 44321100 000111 25688888888864
Q ss_pred hh-----hcccCCCCCCCcceeeeccC
Q 003753 759 LK-----NICHKAMAFPSLERIYVHGC 780 (798)
Q Consensus 759 l~-----~i~~~~~~~~~L~~L~l~~c 780 (798)
+. .++.....+++|++|++++|
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCC
Confidence 33 45555556788888888876
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.58 E-value=4.2e-16 Score=167.84 Aligned_cols=235 Identities=11% Similarity=0.067 Sum_probs=138.3
Q ss_pred ceeeEEeecCCCCCCCC-----CCCCCCC-cceeeeecccccccccHHHHhcC-----CceeEEeCCCCccccccc-cc-
Q 003753 493 EAVRVSLWRSPSIDSLS-----PTPPCSP-RLLTLLVRYTMIKEFENKFFKSM-----YALRVLDSSQNAKLSKLH-VG- 559 (798)
Q Consensus 493 ~l~~lsl~~~~~~~~l~-----~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~l-----~~Lr~L~L~~~~~i~~lp-~~- 559 (798)
+++.|++++| .+...+ ..+..++ +|++|++++|.+.......|..+ ++|++|+|++| .++..+ ..
T Consensus 23 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l 100 (362)
T 3goz_A 23 GVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDEL 100 (362)
T ss_dssp TCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHH
T ss_pred CceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHHH
Confidence 4777777777 666655 2334566 77777777777776655445554 77777777777 666443 22
Q ss_pred ---ccCC-CCCCEEEcCCCCCcccCc-c----ccC-CCcccEEeCCCCCCcc-----cccchhhcCCC-CCccccccCCC
Q 003753 560 ---EGEL-IDLQYLNLSNTNICELPI-G----IKS-CTHLRTLLLDGTENLK-----AIPVGMLSSLL-SLRVFSWVPTR 623 (798)
Q Consensus 560 ---i~~L-~~L~~L~Ls~~~i~~lp~-~----i~~-l~~L~~L~l~~~~~l~-----~lp~~~i~~L~-~L~~L~l~~~~ 623 (798)
+..+ ++|++|++++|.+...+. . +.. .++|++|++++|. +. .++.. +..++ +|++|++++|.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQI-LAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHH-HHTSCTTCCEEECTTSC
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHH-HhcCCccccEeeecCCC
Confidence 3334 677777777777766543 1 233 2577777777776 55 23332 44554 77777777776
Q ss_pred CCCccCCCCCCCcccccHHHhccC-CCCCeeEEEEecccch--hhhhhhhhhcccceeeeeccCchhhhccCceEEeecc
Q 003753 624 YAGFNYGSSVPGVTVLLLEELESL-KHLQEISVIILTIDSL--NKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINC 700 (798)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~L~~l-~~L~~L~l~~~~~~~~--~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~ 700 (798)
+.... .......+..+ ++|+.|+++.+..... ..++... ...+++|++|+|++|
T Consensus 179 l~~~~--------~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l---------------~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 179 LASKN--------CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF---------------SSIPNHVVSLNLCLN 235 (362)
T ss_dssp GGGSC--------HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH---------------HHSCTTCCEEECCSS
T ss_pred Cchhh--------HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH---------------hcCCCCceEEECcCC
Confidence 64100 01112234444 4777777765544331 1122211 111258999999999
Q ss_pred CCCCCC------cccCCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCcc
Q 003753 701 SIKDLT------CIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLP 757 (798)
Q Consensus 701 ~l~~l~------~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 757 (798)
.++..+ .+..+++|+.|+|++|. +..+.... .......+..+++|+.|++++++
T Consensus 236 ~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~--~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQ--CKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHH--HHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHH--HHHHHHHhccCCceEEEecCCCc
Confidence 777654 25678899999999875 11110000 00111355678889999999854
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=6.7e-15 Score=149.62 Aligned_cols=168 Identities=21% Similarity=0.283 Sum_probs=141.4
Q ss_pred cCCcccchhhhhchhceeeEEeecCCCCCCCCC-CCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccc
Q 003753 478 ETDKSIKEQETASWKEAVRVSLWRSPSIDSLSP-TPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKL 556 (798)
Q Consensus 478 ~~~~~~~~~~~~~~~~l~~lsl~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~l 556 (798)
.+.....+|.. ..+.++.|.+.+| .+..++. .+..+++|++|++++|.+..+++..|..+++|++|+|++| .++.+
T Consensus 22 ~~~~l~~~p~~-~~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~ 98 (251)
T 3m19_A 22 QGKSLDSVPSG-IPADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASL 98 (251)
T ss_dssp TTCCCSSCCSC-CCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCC
T ss_pred CCCCccccCCC-CCCCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-ccccc
Confidence 34444444442 2358999999999 8888764 4688999999999999999999888999999999999999 99988
Q ss_pred c-ccccCCCCCCEEEcCCCCCcccCcc-ccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCC
Q 003753 557 H-VGEGELIDLQYLNLSNTNICELPIG-IKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVP 634 (798)
Q Consensus 557 p-~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 634 (798)
| ..+..+++|++|+|++|.+..+|.. +..+++|++|++++|. +..+|.+.++.+++|++|++++|.+.
T Consensus 99 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~--------- 168 (251)
T 3m19_A 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQ--------- 168 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS---------
T ss_pred ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCC---------
Confidence 6 4578999999999999999999765 6889999999999997 89999876999999999999999875
Q ss_pred CcccccHHHhccCCCCCeeEEEEeccc
Q 003753 635 GVTVLLLEELESLKHLQEISVIILTID 661 (798)
Q Consensus 635 ~~~~~~~~~L~~l~~L~~L~l~~~~~~ 661 (798)
......+..+++|+.|+++.+...
T Consensus 169 ---~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 169 ---SVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ---CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ---ccCHHHHhCCCCCCEEEeeCCcee
Confidence 233356778899999999876543
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=2.1e-15 Score=154.12 Aligned_cols=124 Identities=22% Similarity=0.243 Sum_probs=81.4
Q ss_pred hhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEE
Q 003753 491 WKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLN 570 (798)
Q Consensus 491 ~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~ 570 (798)
+.++..+.+..+ .+.+++ .+..+++|++|++++|.+..++ . +..+++|++|+|++| .++.+|. +..+++|++|+
T Consensus 18 l~~l~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNSNIQSLA-G-MQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCS-CTTSEE-CHHHHTTCSEEECTTSCCCCCT-T-GGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCC-Cccccc-chhhcCcCcEEECcCCCcccch-H-HhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEE
Confidence 345555666666 666665 4566677777777777666666 2 666777777777777 6776665 66777777777
Q ss_pred cCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCC
Q 003753 571 LSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 571 Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 625 (798)
+++|.+..+|.. .. ++|++|++++|. +..+|. +..+++|++|++++|.+.
T Consensus 92 L~~N~l~~l~~~-~~-~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 92 VNRNRLKNLNGI-PS-ACLSRLFLDNNE-LRDTDS--LIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp CCSSCCSCCTTC-CC-SSCCEEECCSSC-CSBSGG--GTTCTTCCEEECTTSCCC
T ss_pred CCCCccCCcCcc-cc-CcccEEEccCCc-cCCChh--hcCcccccEEECCCCcCC
Confidence 777777666632 22 677777777775 666653 667777777777766553
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=7.1e-15 Score=143.36 Aligned_cols=151 Identities=13% Similarity=0.159 Sum_probs=131.3
Q ss_pred hchhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccc-ccccccCCCCCC
Q 003753 489 ASWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSK-LHVGEGELIDLQ 567 (798)
Q Consensus 489 ~~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~-lp~~i~~L~~L~ 567 (798)
..+++++.+++.++ .+..+| .+..+++|++|++++|.+..++. +..+++|++|++++| .++. .|..++.+++|+
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECC-ccCcccChhhcCCCCCC
Confidence 45678999999999 999999 78999999999999998877763 899999999999999 8885 688899999999
Q ss_pred EEEcCCCCCcc-cCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhcc
Q 003753 568 YLNLSNTNICE-LPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELES 646 (798)
Q Consensus 568 ~L~Ls~~~i~~-lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 646 (798)
+|++++|.+.. .|..+..+++|++|++++|..+..+|. +..+++|++|++++|.+.. +..+..
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~--------------~~~l~~ 179 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD--------------YRGIED 179 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC--------------CTTGGG
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC--------------hHHhcc
Confidence 99999999985 577899999999999999976888883 8999999999999998751 226788
Q ss_pred CCCCCeeEEEEecc
Q 003753 647 LKHLQEISVIILTI 660 (798)
Q Consensus 647 l~~L~~L~l~~~~~ 660 (798)
+++|+.|+++.+..
T Consensus 180 l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 180 FPKLNQLYAFSQTI 193 (197)
T ss_dssp CSSCCEEEECBC--
T ss_pred CCCCCEEEeeCccc
Confidence 89999999976654
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.56 E-value=1.5e-14 Score=163.12 Aligned_cols=186 Identities=20% Similarity=0.201 Sum_probs=147.4
Q ss_pred ceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcC
Q 003753 493 EAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLS 572 (798)
Q Consensus 493 ~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls 572 (798)
+++.|++.++ .+..+|..+ +++|++|++++|.++.+| ..+++|++|+|++| .++.+|. ++. +|++|+++
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCC-CCCccCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC
Confidence 7889999999 898898655 489999999999999998 35799999999999 9999998 766 99999999
Q ss_pred CCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCe
Q 003753 573 NTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQE 652 (798)
Q Consensus 573 ~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 652 (798)
+|.++.+|. .+++|++|++++|. ++.+|. .+++|++|++++|.+.. ... +. ++|+.
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~L~~-------------lp~-l~--~~L~~ 184 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQ-LTMLPE----LPTSLEVLSVRNNQLTF-------------LPE-LP--ESLEA 184 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSC-------------CCC-CC--TTCCE
T ss_pred CCcCCCCCC---cCccccEEeCCCCc-cCcCCC----cCCCcCEEECCCCCCCC-------------cch-hh--CCCCE
Confidence 999999997 78999999999998 888886 57899999999998762 111 33 78999
Q ss_pred eEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCCc-ccCCCCccEEEeecCCchhhh
Q 003753 653 ISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLTC-IVYIPRLRFLFAKDCPSLEEI 728 (798)
Q Consensus 653 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~~-l~~l~~L~~L~L~~~~~l~~l 728 (798)
|+++.+....++.+.. +|. ... +.|+.|+|++|.++.+|. +..+++|+.|+|++|+....+
T Consensus 185 L~Ls~N~L~~lp~~~~------~L~--------~~~-~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 185 LDVSTNLLESLPAVPV------RNH--------HSE-ETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp EECCSSCCSSCCCCC-----------------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred EECcCCCCCchhhHHH------hhh--------ccc-ccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 9998776554443111 110 001 445999999998888874 778999999999997655544
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.56 E-value=4.6e-15 Score=159.63 Aligned_cols=238 Identities=13% Similarity=0.042 Sum_probs=167.4
Q ss_pred CCCCcceeeeecccccccccH----HHHhcCC-ceeEEeCCCCcccccc-cccccCC-----CCCCEEEcCCCCCcccCc
Q 003753 513 PCSPRLLTLLVRYTMIKEFEN----KFFKSMY-ALRVLDSSQNAKLSKL-HVGEGEL-----IDLQYLNLSNTNICELPI 581 (798)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~----~~~~~l~-~Lr~L~L~~~~~i~~l-p~~i~~L-----~~L~~L~Ls~~~i~~lp~ 581 (798)
...++|++|++++|.+...+. ..|.+++ +|++|+|++| .++.. +..+..+ ++|++|+|++|.+...+.
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 444569999999999998886 6688888 9999999999 88865 5556554 899999999999886643
Q ss_pred c-----ccCC-CcccEEeCCCCCCcccccchhh----cC-CCCCccccccCCCCCCccCCCCCCCcccccHHHhccCC-C
Q 003753 582 G-----IKSC-THLRTLLLDGTENLKAIPVGML----SS-LLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLK-H 649 (798)
Q Consensus 582 ~-----i~~l-~~L~~L~l~~~~~l~~lp~~~i----~~-L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~-~ 649 (798)
. +..+ ++|++|++++|. +...+...+ .. .++|++|++++|.+.... .......+..++ +
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~--------~~~l~~~l~~~~~~ 168 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS--------SDELIQILAAIPAN 168 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC--------HHHHHHHHHTSCTT
T ss_pred HHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH--------HHHHHHHHhcCCcc
Confidence 2 5555 899999999998 777765433 33 369999999999875100 012234455665 9
Q ss_pred CCeeEEEEecccchh--hhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCC-----CC-cccC-CCCccEEEee
Q 003753 650 LQEISVIILTIDSLN--KLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKD-----LT-CIVY-IPRLRFLFAK 720 (798)
Q Consensus 650 L~~L~l~~~~~~~~~--~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~-----l~-~l~~-l~~L~~L~L~ 720 (798)
|+.|+++.+...... .+.... ..+|++|++|+|++|.+.. ++ .+.. .++|++|+|+
T Consensus 169 L~~L~Ls~n~l~~~~~~~l~~~l---------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 169 VNSLNLRGNNLASKNCAELAKFL---------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHH---------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred ccEeeecCCCCchhhHHHHHHHH---------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence 999999877654332 222221 1122489999999998776 32 3444 4699999999
Q ss_pred cCCchhhhhccccccCCCCcccccccccceeecCCcc-------chhhcccCCCCCCCcceeeeccCC
Q 003753 721 DCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLP-------NLKNICHKAMAFPSLERIYVHGCP 781 (798)
Q Consensus 721 ~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-------~l~~i~~~~~~~~~L~~L~l~~c~ 781 (798)
+|. +..... ......+..+++|+.|+|++|. .+..+......+++|+.|++++++
T Consensus 234 ~N~-l~~~~~-----~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 234 LNC-LHGPSL-----ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp SSC-CCCCCH-----HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCC-CCcHHH-----HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 964 333210 0011244678999999999965 245566666678899999998864
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=1e-14 Score=144.87 Aligned_cols=149 Identities=20% Similarity=0.273 Sum_probs=118.3
Q ss_pred eeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccc-cccccCCCCCCEEEcCC
Q 003753 495 VRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLSN 573 (798)
Q Consensus 495 ~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~Ls~ 573 (798)
+.+...++ .+..+|..+. ++|+.|++++|.+..+++..|..+++|++|+|++| .++.+ |..+..+++|++|+|++
T Consensus 14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCC
Confidence 34666666 7788885444 68899999999888888877888899999999999 88877 77888899999999999
Q ss_pred CCCcccCcc-ccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCe
Q 003753 574 TNICELPIG-IKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQE 652 (798)
Q Consensus 574 ~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 652 (798)
|.++.+|.. +..+++|++|++++|. +..++...+..+++|++|++++|.+. ......+..+++|+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~------------~~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQ------------TIAKGTFSPLRAIQT 156 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS------------CCCTTTTTTCTTCCE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCC------------EECHHHHhCCCCCCE
Confidence 988888765 5788999999999887 77776666888999999999888775 223344677888888
Q ss_pred eEEEEecc
Q 003753 653 ISVIILTI 660 (798)
Q Consensus 653 L~l~~~~~ 660 (798)
|++..+..
T Consensus 157 L~L~~N~~ 164 (220)
T 2v9t_B 157 MHLAQNPF 164 (220)
T ss_dssp EECCSSCE
T ss_pred EEeCCCCc
Confidence 88876544
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=1.3e-14 Score=163.47 Aligned_cols=182 Identities=19% Similarity=0.223 Sum_probs=140.0
Q ss_pred CcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCccccCCCcccEEeCC
Q 003753 516 PRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKSCTHLRTLLLD 595 (798)
Q Consensus 516 ~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~l~ 595 (798)
.+|+.|++++|.+..+|..+ +++|++|+|++| .++.+| +.+++|++|++++|+++.+|. +.+ +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL---PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC---CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhH---cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 37899999999999998863 378999999999 899998 557899999999999999987 665 99999999
Q ss_pred CCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecccchhhhhhhhhhccc
Q 003753 596 GTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQSC 675 (798)
Q Consensus 596 ~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~ 675 (798)
+|. +..+|. .+++|++|++++|.+.. +.. .+++|+.|+++.+....++. .
T Consensus 129 ~N~-l~~lp~----~l~~L~~L~Ls~N~l~~--------------lp~--~l~~L~~L~Ls~N~L~~lp~----l----- 178 (571)
T 3cvr_A 129 NNQ-LTMLPE----LPALLEYINADNNQLTM--------------LPE--LPTSLEVLSVRNNQLTFLPE----L----- 178 (571)
T ss_dssp SSC-CSCCCC----CCTTCCEEECCSSCCSC--------------CCC--CCTTCCEEECCSSCCSCCCC----C-----
T ss_pred CCc-CCCCCC----cCccccEEeCCCCccCc--------------CCC--cCCCcCEEECCCCCCCCcch----h-----
Confidence 997 888886 68899999999988752 111 46788888887765544332 1
Q ss_pred ceeeeeccCchhhhccCceEEeeccCCCCCCcccCCCCc-------cEEEeecCCchhhhhccccccCCCCccccccccc
Q 003753 676 IRRLVMGLPEAIFSQDLQDLSIINCSIKDLTCIVYIPRL-------RFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHL 748 (798)
Q Consensus 676 L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~~l~~l~~L-------~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L 748 (798)
+++|+.|+|++|.++.+|.+.. +| +.|+|++| .++.++ ..+..+++|
T Consensus 179 -------------~~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N-~l~~lp----------~~l~~l~~L 232 (571)
T 3cvr_A 179 -------------PESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCREN-RITHIP----------ENILSLDPT 232 (571)
T ss_dssp -------------CTTCCEEECCSSCCSSCCCCC----------CCEEEECCSS-CCCCCC----------GGGGGSCTT
T ss_pred -------------hCCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCCC-cceecC----------HHHhcCCCC
Confidence 1689999999998888776443 67 99999985 455553 356668999
Q ss_pred ceeecCCccchhhcc
Q 003753 749 RQAYFFKLPNLKNIC 763 (798)
Q Consensus 749 ~~L~L~~~~~l~~i~ 763 (798)
+.|+|++++--..++
T Consensus 233 ~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 233 CTIILEDNPLSSRIR 247 (571)
T ss_dssp EEEECCSSSCCHHHH
T ss_pred CEEEeeCCcCCCcCH
Confidence 999999965444444
No 109
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.54 E-value=9.1e-15 Score=168.71 Aligned_cols=105 Identities=19% Similarity=0.065 Sum_probs=52.5
Q ss_pred CCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccc---ccccccccCCCCCCEEEcCCCCCcccCccccCCCccc
Q 003753 514 CSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKL---SKLHVGEGELIDLQYLNLSNTNICELPIGIKSCTHLR 590 (798)
Q Consensus 514 ~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i---~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~ 590 (798)
.+++|++|++.+|.+..++.. +.++++|+.|+++++... ...+..+..+++|+.|+++++....+|..+..+++|+
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCC
T ss_pred hCCCCcEEeccCccHHHHHHH-HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCc
Confidence 344555555555544444422 444555555555432111 1122334445555555555554455565566667777
Q ss_pred EEeCCCCCCccccc-chhhcCCCCCcccccc
Q 003753 591 TLLLDGTENLKAIP-VGMLSSLLSLRVFSWV 620 (798)
Q Consensus 591 ~L~l~~~~~l~~lp-~~~i~~L~~L~~L~l~ 620 (798)
+|++++|. +.... ...+..+++|++|+++
T Consensus 297 ~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 297 KLDLLYAL-LETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp EEEETTCC-CCHHHHHHHHTTCTTCCEEEEE
T ss_pred EEecCCCc-CCHHHHHHHHHhCcCCCEEecc
Confidence 77777765 33211 1224566666666665
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=1.2e-14 Score=141.65 Aligned_cols=149 Identities=13% Similarity=0.150 Sum_probs=90.9
Q ss_pred CCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcc-cCccccCCCcccE
Q 003753 513 PCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICE-LPIGIKSCTHLRT 591 (798)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~-lp~~i~~l~~L~~ 591 (798)
..+++|+.|++++|.+..+| . +..+++|++|++++| .++.++ .+..+++|++|++++|.+.. .|..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-G-IEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-T-GGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChH-H-HhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44556666666666666665 2 666666666666666 555544 46666666666666666654 3555666666666
Q ss_pred EeCCCCCCccc-ccchhhcCCCCCccccccCCC-CCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecccchhhhhhh
Q 003753 592 LLLDGTENLKA-IPVGMLSSLLSLRVFSWVPTR-YAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDSLNKLKSS 669 (798)
Q Consensus 592 L~l~~~~~l~~-lp~~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~ 669 (798)
|++++|. +.. .|.. ++.+++|++|++++|. +. .+..+
T Consensus 117 L~Ls~n~-i~~~~~~~-l~~l~~L~~L~L~~n~~i~------------------------------------~~~~l--- 155 (197)
T 4ezg_A 117 LDISHSA-HDDSILTK-INTLPKVNSIDLSYNGAIT------------------------------------DIMPL--- 155 (197)
T ss_dssp EECCSSB-CBGGGHHH-HTTCSSCCEEECCSCTBCC------------------------------------CCGGG---
T ss_pred EEecCCc-cCcHhHHH-HhhCCCCCEEEccCCCCcc------------------------------------ccHhh---
Confidence 6666665 443 3333 5666666666666554 21 11100
Q ss_pred hhhcccceeeeeccCchhhhccCceEEeeccCCCCCCcccCCCCccEEEeecCC
Q 003753 670 LKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLTCIVYIPRLRFLFAKDCP 723 (798)
Q Consensus 670 ~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~ 723 (798)
..+ ++|+.|++++|.++.++.+..+++|+.|++++|+
T Consensus 156 ----------------~~l-~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 156 ----------------KTL-PELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ----------------GGC-SSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC-
T ss_pred ----------------cCC-CCCCEEECCCCCCcChHHhccCCCCCEEEeeCcc
Confidence 112 6788888888877777777788888888887753
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=2.5e-14 Score=142.95 Aligned_cols=146 Identities=21% Similarity=0.270 Sum_probs=88.9
Q ss_pred eEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccc-cccCCCCCCEEEcCCC
Q 003753 496 RVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHV-GEGELIDLQYLNLSNT 574 (798)
Q Consensus 496 ~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~Ls~~ 574 (798)
.+...++ .+..+|..+. ++|++|++++|.+..+++..|.++++|++|+|++| .++.+|. .+..+++|++|+|++|
T Consensus 23 ~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 23 TVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp EEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC
Confidence 3445555 5666664332 56666666666666665555666666666666666 6666653 3466666666666666
Q ss_pred CCcccCcc-ccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCee
Q 003753 575 NICELPIG-IKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEI 653 (798)
Q Consensus 575 ~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L 653 (798)
.++.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|.+. ......+..+++|+.|
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~------------~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLK------------SIPHGAFDRLSSLTHA 164 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCC------------CCCTTTTTTCTTCCEE
T ss_pred cCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCC------------ccCHHHHhCCCCCCEE
Confidence 66666543 4566666666666665 6666665 566666666666666554 1222345556666666
Q ss_pred EEEEec
Q 003753 654 SVIILT 659 (798)
Q Consensus 654 ~l~~~~ 659 (798)
++..+.
T Consensus 165 ~l~~N~ 170 (229)
T 3e6j_A 165 YLFGNP 170 (229)
T ss_dssp ECTTSC
T ss_pred EeeCCC
Confidence 665444
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=1.8e-14 Score=141.93 Aligned_cols=125 Identities=26% Similarity=0.375 Sum_probs=100.7
Q ss_pred eEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccccc-ccCCCCCCEEEcCCC
Q 003753 496 RVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVG-EGELIDLQYLNLSNT 574 (798)
Q Consensus 496 ~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~Ls~~ 574 (798)
.+...++ .+..+|..+ .++|++|++++|.+..++...|..+++|++|++++| .++.+|.. +..+++|++|++++|
T Consensus 11 ~v~c~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 11 TVECYSQ-GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EEECCSS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCC-CccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC
Confidence 4555556 677777443 458899999999888888887888999999999998 88888654 578899999999999
Q ss_pred CCcccCcc-ccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCC
Q 003753 575 NICELPIG-IKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 575 ~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 625 (798)
.+..+|.. +..+++|++|++++|. +..+|...+..+++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccc
Confidence 88888654 6788999999999887 78888776788899999999887654
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=3.1e-14 Score=142.27 Aligned_cols=144 Identities=26% Similarity=0.291 Sum_probs=126.4
Q ss_pred cCCcccchhhhhchhceeeEEeecCCCCCCC-CCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccc
Q 003753 478 ETDKSIKEQETASWKEAVRVSLWRSPSIDSL-SPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKL 556 (798)
Q Consensus 478 ~~~~~~~~~~~~~~~~l~~lsl~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~l 556 (798)
.+.....+|.. ..++++.|.+.+| .+..+ +..+..+++|++|++++|.+..++...|..+++|++|+|++| .++.+
T Consensus 27 ~~~~l~~ip~~-~~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l 103 (229)
T 3e6j_A 27 RSKRHASVPAG-IPTNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVL 103 (229)
T ss_dssp TTSCCSSCCSC-CCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred cCCCcCccCCC-CCCCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCcc
Confidence 34445555542 3478999999999 88887 445689999999999999999999888999999999999999 99998
Q ss_pred ccc-ccCCCCCCEEEcCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCC
Q 003753 557 HVG-EGELIDLQYLNLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 557 p~~-i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 625 (798)
|.. +..+++|++|+|++|++..+|..+..+++|++|++++|. +..+|...+..+++|++|++++|.+.
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 654 689999999999999999999999999999999999997 89999877899999999999998765
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=6e-14 Score=143.36 Aligned_cols=152 Identities=20% Similarity=0.173 Sum_probs=133.9
Q ss_pred hhhhchhceeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCC
Q 003753 486 QETASWKEAVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELID 565 (798)
Q Consensus 486 ~~~~~~~~l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~ 565 (798)
+....+++++.|.+.++ .+..++ .+..+++|++|++++|.+..+++ +..+++|++|++++| .++.+|.... .+
T Consensus 35 ~~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~~~--~~ 107 (263)
T 1xeu_A 35 VSQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNGIPS--AC 107 (263)
T ss_dssp ECHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTTCCC--SS
T ss_pred cchhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCcccc--Cc
Confidence 34456679999999999 999998 78899999999999999999988 899999999999999 9999886444 99
Q ss_pred CCEEEcCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhc
Q 003753 566 LQYLNLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELE 645 (798)
Q Consensus 566 L~~L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 645 (798)
|++|++++|.++.+| .+..+++|++|++++|. +..+|. +..+++|++|++++|.+.. . ..+.
T Consensus 108 L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~------------~--~~l~ 169 (263)
T 1xeu_A 108 LSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITN------------T--GGLT 169 (263)
T ss_dssp CCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCB------------C--TTST
T ss_pred ccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcc------------h--HHhc
Confidence 999999999999987 69999999999999998 888873 8999999999999998761 1 5678
Q ss_pred cCCCCCeeEEEEecccc
Q 003753 646 SLKHLQEISVIILTIDS 662 (798)
Q Consensus 646 ~l~~L~~L~l~~~~~~~ 662 (798)
.+++|+.|+++.+....
T Consensus 170 ~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 170 RLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TCCCCCEEEEEEEEEEC
T ss_pred cCCCCCEEeCCCCcccC
Confidence 89999999998876543
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=4.1e-14 Score=140.42 Aligned_cols=150 Identities=15% Similarity=0.221 Sum_probs=118.8
Q ss_pred eeEEeecCCCCCCCCCCCCCCCcceeeeeccccccccc-HHHHhcCCceeEEeCCCCcccccccc-cccCCCCCCEEEcC
Q 003753 495 VRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFE-NKFFKSMYALRVLDSSQNAKLSKLHV-GEGELIDLQYLNLS 572 (798)
Q Consensus 495 ~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~Ls 572 (798)
+.+.+.++ .+..+|..+ .+.++.|++++|.+..++ ...|..+++|++|+|++| .++.++. .+..+++|++|+|+
T Consensus 14 ~~l~~s~n-~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSS-CCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCC-CcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECC
Confidence 46778888 888888544 345688999999888874 455888999999999999 8888754 78889999999999
Q ss_pred CCCCcccCc-cccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCC
Q 003753 573 NTNICELPI-GIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQ 651 (798)
Q Consensus 573 ~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 651 (798)
+|.+..+|. .+..+++|++|++++|. +..+++..+..+++|++|++++|.+. ......+..+++|+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~------------~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQIT------------TVAPGAFDTLHSLS 156 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCC------------CBCTTTTTTCTTCC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCC------------EECHHHhcCCCCCC
Confidence 999888865 47889999999999987 77776555888999999999988775 33345677788888
Q ss_pred eeEEEEeccc
Q 003753 652 EISVIILTID 661 (798)
Q Consensus 652 ~L~l~~~~~~ 661 (798)
.|+++.+...
T Consensus 157 ~L~L~~N~l~ 166 (220)
T 2v70_A 157 TLNLLANPFN 166 (220)
T ss_dssp EEECCSCCEE
T ss_pred EEEecCcCCc
Confidence 8888766543
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=5.8e-14 Score=139.30 Aligned_cols=145 Identities=19% Similarity=0.199 Sum_probs=125.6
Q ss_pred ecCCcccchhhhhchhceeeEEeecCCCCCCCCC-CCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccc
Q 003753 477 QETDKSIKEQETASWKEAVRVSLWRSPSIDSLSP-TPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSK 555 (798)
Q Consensus 477 ~~~~~~~~~~~~~~~~~l~~lsl~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~ 555 (798)
..+.+...+|.. .+++++.|.+.+| .+..++. .+..+++|+.|++++|.+..+++..|.++++|++|+|++| .++.
T Consensus 18 c~~~~l~~iP~~-l~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 94 (220)
T 2v9t_B 18 CRGKGLTEIPTN-LPETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITE 94 (220)
T ss_dssp CTTSCCSSCCSS-CCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCC
T ss_pred cCCCCcCcCCCc-cCcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCc
Confidence 334455555543 2368999999999 9988875 4688999999999999999997777999999999999999 9999
Q ss_pred cccc-ccCCCCCCEEEcCCCCCccc-CccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCC
Q 003753 556 LHVG-EGELIDLQYLNLSNTNICEL-PIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 556 lp~~-i~~L~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 625 (798)
+|.. +..+++|++|+|++|.+..+ |..+..+++|++|++++|. +..+|.+.+..+++|++|++++|.+.
T Consensus 95 l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 9865 58899999999999999988 5678999999999999998 88898877999999999999998764
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=4e-14 Score=152.07 Aligned_cols=126 Identities=15% Similarity=0.176 Sum_probs=103.8
Q ss_pred eeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHh-cCCceeEEeCCCCccccccc-ccccCCCCCCEEEcC
Q 003753 495 VRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFK-SMYALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLS 572 (798)
Q Consensus 495 ~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~-~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~Ls 572 (798)
+.+...++ .+..+|..+. +.++.|+|++|.+..++...|. ++++|++|+|++| .++.+| ..+..+++|++|+|+
T Consensus 21 ~~l~c~~~-~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSS-CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCC-CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECC
Confidence 45777777 7888885443 4688899999999888887777 8899999999999 888885 468889999999999
Q ss_pred CCCCcccCc-cccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCC
Q 003753 573 NTNICELPI-GIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 573 ~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 625 (798)
+|.+..+|. .+..+++|++|+|++|. +..+++..+..+++|++|++++|.+.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCC
Confidence 999988864 57889999999999987 77776666888999999999988765
No 118
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.47 E-value=3.1e-14 Score=164.24 Aligned_cols=267 Identities=12% Similarity=0.043 Sum_probs=155.6
Q ss_pred chhceeeEEeecCCCCCCCC-----CCCCCCCcceeeeeccccccccc----HHHHhcCCceeEEeCCCCcccccccccc
Q 003753 490 SWKEAVRVSLWRSPSIDSLS-----PTPPCSPRLLTLLVRYTMIKEFE----NKFFKSMYALRVLDSSQNAKLSKLHVGE 560 (798)
Q Consensus 490 ~~~~l~~lsl~~~~~~~~l~-----~~~~~~~~L~~L~l~~~~~~~l~----~~~~~~l~~Lr~L~L~~~~~i~~lp~~i 560 (798)
..++++.|++.+| .+.... .....+++|++|++++|.+..+. ...+.++++|++|++++| .+..+|..+
T Consensus 162 ~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~ 239 (592)
T 3ogk_B 162 HCRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFF 239 (592)
T ss_dssp HCTTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHH
T ss_pred hCCCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHH
Confidence 3467888888877 443221 11245778888888888665222 223567888888888888 787888888
Q ss_pred cCCCCCCEEEcCCCCC----cccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCc
Q 003753 561 GELIDLQYLNLSNTNI----CELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGV 636 (798)
Q Consensus 561 ~~L~~L~~L~Ls~~~i----~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 636 (798)
..+++|++|+++.+.. ...+..+..+++|+.|+++++. ...+|.. +..+++|++|++++|.+..
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~-~~~~~~L~~L~Ls~~~l~~---------- 307 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPIL-FPFAAQIRKLDLLYALLET---------- 307 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGG-GGGGGGCCEEEETTCCCCH----------
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHH-HhhcCCCcEEecCCCcCCH----------
Confidence 8888888888875421 2344567788888888888764 5667765 7889999999999987541
Q ss_pred ccccHHHhccCCCCCeeEEE------------------------E----------ecccchhhhhhhhhhcccceeeee-
Q 003753 637 TVLLLEELESLKHLQEISVI------------------------I----------LTIDSLNKLKSSLKLQSCIRRLVM- 681 (798)
Q Consensus 637 ~~~~~~~L~~l~~L~~L~l~------------------------~----------~~~~~~~~l~~~~~~~~~L~~L~l- 681 (798)
......+.++++|+.|++. . ++.-....+......+++|++|.+
T Consensus 308 -~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~ 386 (592)
T 3ogk_B 308 -EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY 386 (592)
T ss_dssp -HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE
T ss_pred -HHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee
Confidence 1111223445555555554 1 111111111111222345555554
Q ss_pred --ccCc-------hhhhccCceEEeec---c-CCCCCC-------cccCCCCccEEEeecCCc-hhhhhccccccCCCCc
Q 003753 682 --GLPE-------AIFSQDLQDLSIIN---C-SIKDLT-------CIVYIPRLRFLFAKDCPS-LEEIIASDLRFEPSEE 740 (798)
Q Consensus 682 --~lp~-------~~lp~~L~~L~L~~---~-~l~~l~-------~l~~l~~L~~L~L~~~~~-l~~l~~~~~~~~~~~~ 740 (798)
.+.. ..+ ++|+.|++++ | .++..| .+..+++|++|+|+.|.. +..... ..
T Consensus 387 ~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~--------~~ 457 (592)
T 3ogk_B 387 VSDITNESLESIGTYL-KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL--------SY 457 (592)
T ss_dssp ESCCCHHHHHHHHHHC-CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH--------HH
T ss_pred cCCccHHHHHHHHhhC-CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH--------HH
Confidence 1111 123 5566666652 2 444321 133466666666665442 111100 01
Q ss_pred ccccccccceeecCCccchh--hcccCCCCCCCcceeeeccCC
Q 003753 741 NLSMFLHLRQAYFFKLPNLK--NICHKAMAFPSLERIYVHGCP 781 (798)
Q Consensus 741 ~~~~~~~L~~L~L~~~~~l~--~i~~~~~~~~~L~~L~l~~c~ 781 (798)
....+++|+.|+|++|. +. .++.....+++|++|++++|+
T Consensus 458 ~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp HHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred HHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence 12347888888888764 32 233334567999999998874
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=135.82 Aligned_cols=143 Identities=17% Similarity=0.177 Sum_probs=122.2
Q ss_pred CCcccchhhhhchhceeeEEeecCCCCCCCCCC--CCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccc
Q 003753 479 TDKSIKEQETASWKEAVRVSLWRSPSIDSLSPT--PPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKL 556 (798)
Q Consensus 479 ~~~~~~~~~~~~~~~l~~lsl~~~~~~~~l~~~--~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~l 556 (798)
+.....+|.. ....++.|.+.+| .+..++.. +..+++|++|++++|.+..+++..|.++++|++|+|++| .++.+
T Consensus 20 ~n~l~~iP~~-~~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~ 96 (220)
T 2v70_A 20 NQKLNKIPEH-IPQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENV 96 (220)
T ss_dssp SSCCSSCCSC-CCTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred CCCcccCccC-CCCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccCcc
Confidence 3344444432 2446789999999 89888432 578999999999999999999877999999999999999 89988
Q ss_pred cc-cccCCCCCCEEEcCCCCCccc-CccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCC
Q 003753 557 HV-GEGELIDLQYLNLSNTNICEL-PIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 557 p~-~i~~L~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 625 (798)
|. .+..+++|++|+|++|.+..+ |..+..+++|++|++++|. +..+++..+..+++|++|++++|.+.
T Consensus 97 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 97 QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 55 589999999999999999988 6789999999999999997 88886556999999999999998765
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.45 E-value=2.7e-13 Score=133.38 Aligned_cols=132 Identities=25% Similarity=0.313 Sum_probs=118.6
Q ss_pred hhceeeEEeecCCCCCCCCCC-CCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccccc-ccCCCCCCE
Q 003753 491 WKEAVRVSLWRSPSIDSLSPT-PPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVG-EGELIDLQY 568 (798)
Q Consensus 491 ~~~l~~lsl~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~ 568 (798)
.++++.|.+.++ .+..++.. +..+++|++|++++|.+..++...|..+++|++|++++| .++.+|.. +..+++|++
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCE
Confidence 458999999999 88888754 478999999999999999999988899999999999999 99988754 689999999
Q ss_pred EEcCCCCCcccCcc-ccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCC
Q 003753 569 LNLSNTNICELPIG-IKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 569 L~Ls~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 625 (798)
|++++|.+..+|.. +..+++|++|++++|. +..+|...+..+++|++|++++|.+.
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee
Confidence 99999999998765 7899999999999997 88888877899999999999998654
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=7.9e-14 Score=129.18 Aligned_cols=124 Identities=21% Similarity=0.170 Sum_probs=95.4
Q ss_pred hceeeEEeecCCCCC--CCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccc-ccccccCCCCCCE
Q 003753 492 KEAVRVSLWRSPSID--SLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSK-LHVGEGELIDLQY 568 (798)
Q Consensus 492 ~~l~~lsl~~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~-lp~~i~~L~~L~~ 568 (798)
++++.+.+.++ .+. .+|..+..+++|++|++++|.+..+ ..|..+++|++|++++| .++. +|..++.+++|++
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCE
Confidence 47888888888 776 6776667788888888888877777 33778888888888888 7776 6776677888888
Q ss_pred EEcCCCCCcccC--ccccCCCcccEEeCCCCCCcccccc---hhhcCCCCCcccccc
Q 003753 569 LNLSNTNICELP--IGIKSCTHLRTLLLDGTENLKAIPV---GMLSSLLSLRVFSWV 620 (798)
Q Consensus 569 L~Ls~~~i~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~---~~i~~L~~L~~L~l~ 620 (798)
|++++|.+..+| ..+..+++|++|++++|. +..+|. ..+..+++|++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 888888887764 677888888888888886 777765 447778888888765
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=7.1e-14 Score=132.42 Aligned_cols=129 Identities=16% Similarity=0.119 Sum_probs=97.3
Q ss_pred hceeeEEeecCCCCC--CCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccc-ccccccCCCCCCE
Q 003753 492 KEAVRVSLWRSPSID--SLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSK-LHVGEGELIDLQY 568 (798)
Q Consensus 492 ~~l~~lsl~~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~-lp~~i~~L~~L~~ 568 (798)
++++.|.+.+| .+. .+|..+..+++|++|++++|.+..+ ..|..+++|++|++++| .++. +|..+..+++|++
T Consensus 24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCE
Confidence 46788888887 776 7776667778888888888877776 33777888888888888 7776 5666666888888
Q ss_pred EEcCCCCCcccC--ccccCCCcccEEeCCCCCCcccccc---hhhcCCCCCccccccCCCCC
Q 003753 569 LNLSNTNICELP--IGIKSCTHLRTLLLDGTENLKAIPV---GMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 569 L~Ls~~~i~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~---~~i~~L~~L~~L~l~~~~~~ 625 (798)
|++++|.++.+| ..+..+++|++|++++|. +..+|. ..+..+++|++|++++|...
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 888888887765 577788888888888886 777765 34777888888888777654
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=1.7e-13 Score=147.12 Aligned_cols=168 Identities=19% Similarity=0.219 Sum_probs=137.1
Q ss_pred ecCCcccchhhhhchhceeeEEeecCCCCCCCCCCC-C-CCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccc
Q 003753 477 QETDKSIKEQETASWKEAVRVSLWRSPSIDSLSPTP-P-CSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLS 554 (798)
Q Consensus 477 ~~~~~~~~~~~~~~~~~l~~lsl~~~~~~~~l~~~~-~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~ 554 (798)
..+.....+|.. .+..++.|++++| .+..++... . .+++|++|++++|.+..+++..|.++++|++|+|++| .++
T Consensus 25 c~~~~l~~iP~~-~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~ 101 (361)
T 2xot_A 25 CSKQQLPNVPQS-LPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLH 101 (361)
T ss_dssp CCSSCCSSCCSS-CCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCC
T ss_pred eCCCCcCccCcc-CCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCC
Confidence 334445555542 3457899999999 999887554 4 8999999999999999999888999999999999999 899
Q ss_pred cccc-cccCCCCCCEEEcCCCCCccc-CccccCCCcccEEeCCCCCCcccccchhh---cCCCCCccccccCCCCCCccC
Q 003753 555 KLHV-GEGELIDLQYLNLSNTNICEL-PIGIKSCTHLRTLLLDGTENLKAIPVGML---SSLLSLRVFSWVPTRYAGFNY 629 (798)
Q Consensus 555 ~lp~-~i~~L~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~i---~~L~~L~~L~l~~~~~~~~~~ 629 (798)
.+|. .+..+.+|++|+|++|.|..+ |..+..+++|++|+|++|. +..+|...+ ..+++|++|++++|.+.
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~---- 176 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK---- 176 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC----
T ss_pred cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC----
Confidence 8865 689999999999999999988 6789999999999999997 999998755 67999999999999875
Q ss_pred CCCCCCcccccHHHhccCCC--CCeeEEEEecc
Q 003753 630 GSSVPGVTVLLLEELESLKH--LQEISVIILTI 660 (798)
Q Consensus 630 ~~~~~~~~~~~~~~L~~l~~--L~~L~l~~~~~ 660 (798)
......+..+++ |+.|++..+..
T Consensus 177 --------~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 177 --------KLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp --------CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred --------ccCHHHhhhccHhhcceEEecCCCc
Confidence 334456666665 36778776543
No 124
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=3.1e-11 Score=130.93 Aligned_cols=297 Identities=13% Similarity=0.002 Sum_probs=183.1
Q ss_pred cccchhHHHHHHHHHhhc----CCceEEEEEecCCchHHHHHHHHHHHhhhh---cCC--CCeEEEEEcCCcc-CHHHHH
Q 003753 131 NIVGIESRLSEVWRYIED----DGVKIIGLYGVRGVGKSTLLKQLNDTFSDM---SHK--FGAVIMVKASTEL-NIEKIQ 200 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~--f~~~~wv~vs~~~-~~~~~~ 200 (798)
.++||+.+++++.+++.. +..+.+.|+|++|+||||+|+.+++..... ... ...++|++++... +...++
T Consensus 21 ~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 100 (384)
T 2qby_B 21 EIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVL 100 (384)
T ss_dssp SCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHH
Confidence 699999999999988743 446789999999999999999999876321 011 3457888887777 888888
Q ss_pred HHHHHHc-CCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc---ccc-c-CCC-CCCCcEEEEeCCchHH-
Q 003753 201 DVIRSRL-GIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE---LSE-A-GVP-VQNASKIVFTTIFEEV- 272 (798)
Q Consensus 201 ~~i~~~l-~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~---~~~-~-~~p-~~~gs~iivTTR~~~v- 272 (798)
..++.++ +.... ....+.......+.+.+..++.+|||||++.... ... + .+. ...+..+|+||+....
T Consensus 101 ~~l~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 101 SSLAGKLTGFSVP---KHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHCSCCC---SSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHhcCCCCC---CCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchH
Confidence 9988887 33221 1234456677788888887777999999986431 111 1 111 1167889999987532
Q ss_pred -------hhhcCCCcceeccCCChHHHHHHHHHhccC--cccCCChhHHHHHHHHHHHhC---CCch-HHHHHHHH--hc
Q 003753 273 -------CSSMSVDWRFKVDYLPQEEAWNLFRLKVTD--EVLNSHPEIRELAETVANMCG---GLPL-ALVTIGSA--MA 337 (798)
Q Consensus 273 -------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~---glPL-ai~~~g~~--l~ 337 (798)
...+ ...+.+++++.++..++|...+.. .....+ .+..+.+++.++ |.|. |+..+-.. +.
T Consensus 178 ~~l~~~l~sr~--~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 178 DYMEPRVLSSL--GPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTSCHHHHHTC--CCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hhhCHHHHhcC--CCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 1222 237899999999999999987642 111122 234667777777 8876 44333322 22
Q ss_pred C---CCChhHHHHHHHHHhcCCCCCCCcccchhhhhhhhhcCCCchhHhHHHHhhcCCCCCceecHHHHHHHHHhcCCCc
Q 003753 338 S---RRDPDNWRYAIEELQRYPSGFESIGTHVFPLLKFSYDRLTSETHKTCFLYGSLFPRNQIIMKDELIELWIGEGLLR 414 (798)
Q Consensus 338 ~---~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~ 414 (798)
. .-+.+.+..+++... ...+..++..|+++ .+..+..++....+-.+. .......-..| ..
T Consensus 253 ~~~~~i~~~~v~~~~~~~~-------------~~~~~~~~~~l~~~-~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~ 316 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYE-------------QERLIEAVKALPFH-YKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK 316 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHH-------------HHHHHHHHHSSCHH-HHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC
T ss_pred cCCCccCHHHHHHHHHHHh-------------cchHHHHHHcCCHH-HHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC
Confidence 1 235666766665432 13455677888875 666655555511101111 11111111223 11
Q ss_pred CCccHHHHHHhHHHHHHHHHHcccccccccC-CCcCcEEEccc
Q 003753 415 DSHNIAVARREGKFILESLKLACLLEEVEVN-NSEDFVKMHNM 456 (798)
Q Consensus 415 ~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~-~~~~~~~mHdl 456 (798)
+. .......+++.|...++++..... +....++++.+
T Consensus 317 ~~-----~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~~~~l 354 (384)
T 2qby_B 317 PL-----SYRRFSDIISELDMFGIVKIRIINRGRAGGVKKYAL 354 (384)
T ss_dssp CC-----CHHHHHHHHHHHHHTTSEEEEEECCTTTTCCEEEEE
T ss_pred CC-----CHHHHHHHHHHHHhCCCEEEEeccCCCCCceEEEEe
Confidence 11 124566789999999999875432 22344545433
No 125
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.41 E-value=1.2e-13 Score=159.40 Aligned_cols=130 Identities=20% Similarity=0.204 Sum_probs=76.4
Q ss_pred chhceeeEEeecCCCCCC-----CCCCCCCCCcceeeeecccccccccH----HHHhcCCceeEEeCCCCcccccccccc
Q 003753 490 SWKEAVRVSLWRSPSIDS-----LSPTPPCSPRLLTLLVRYTMIKEFEN----KFFKSMYALRVLDSSQNAKLSKLHVGE 560 (798)
Q Consensus 490 ~~~~l~~lsl~~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~l~~----~~~~~l~~Lr~L~L~~~~~i~~lp~~i 560 (798)
..++++.|++.+| .+.. ++.....+++|++|++++|. ..++. ..+.++++|++|++++|..++.+|..+
T Consensus 154 ~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~ 231 (594)
T 2p1m_B 154 TCRNLKELDLRES-DVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL 231 (594)
T ss_dssp HCTTCCEEECTTC-EEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH
T ss_pred hCCCCCEEeCcCC-ccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH
Confidence 3567888888877 4332 33223467788888888875 22222 224557888888888875555666666
Q ss_pred cCCCCCCEEEcCCCC-------------------------------CcccCccccCCCcccEEeCCCCCCcccc-cchhh
Q 003753 561 GELIDLQYLNLSNTN-------------------------------ICELPIGIKSCTHLRTLLLDGTENLKAI-PVGML 608 (798)
Q Consensus 561 ~~L~~L~~L~Ls~~~-------------------------------i~~lp~~i~~l~~L~~L~l~~~~~l~~l-p~~~i 608 (798)
..+++|++|+++.+. ...+|..+..+++|++|++++|. +... ....+
T Consensus 232 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~ 310 (594)
T 2p1m_B 232 QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLL 310 (594)
T ss_dssp HHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHH
T ss_pred hcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHH
Confidence 667777777654431 11223233345667777776665 3321 11224
Q ss_pred cCCCCCccccccCC
Q 003753 609 SSLLSLRVFSWVPT 622 (798)
Q Consensus 609 ~~L~~L~~L~l~~~ 622 (798)
..+++|++|++++|
T Consensus 311 ~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 311 CQCPKLQRLWVLDY 324 (594)
T ss_dssp TTCTTCCEEEEEGG
T ss_pred hcCCCcCEEeCcCc
Confidence 46666666666655
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.41 E-value=7.9e-13 Score=128.03 Aligned_cols=125 Identities=19% Similarity=0.249 Sum_probs=109.1
Q ss_pred eeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccc-ccccCCCCCCEEEcCC
Q 003753 495 VRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLSN 573 (798)
Q Consensus 495 ~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~Ls~ 573 (798)
+.+.+.++ .+..+|..+. ++|++|++++|.+..+|.. |.++++|++|+|++| .++.++ ..+..+++|++|+|++
T Consensus 13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCchhHHH-hhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCC
Confidence 45777777 8888885543 6899999999999999854 999999999999999 899885 5689999999999999
Q ss_pred CCCcccCc-cccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCC
Q 003753 574 TNICELPI-GIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 574 ~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 625 (798)
|.++.+|. .+..+++|++|++++|. +..+|.+.+..+++|++|++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 99998864 68999999999999997 88999877889999999999988764
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.41 E-value=2.2e-15 Score=170.81 Aligned_cols=197 Identities=16% Similarity=0.174 Sum_probs=124.9
Q ss_pred CCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCc-------------ccccccccccCCCCCCEEE-cCCCCCcc
Q 003753 513 PCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNA-------------KLSKLHVGEGELIDLQYLN-LSNTNICE 578 (798)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~-------------~i~~lp~~i~~L~~L~~L~-Ls~~~i~~ 578 (798)
..+++|+.|+|++|.+..+|.. +++|++|+.|++++|. .....|..++.+.+|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~-i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHH-HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 4577788888888888888777 7888888888886662 1223355666666777666 44443333
Q ss_pred cCc------cccC--CCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCC
Q 003753 579 LPI------GIKS--CTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHL 650 (798)
Q Consensus 579 lp~------~i~~--l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L 650 (798)
++. .+.. ...|+.|++++|. +..+|. ++.+++|++|++++|.+. ..+..++++++|
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~--~~~l~~L~~L~Ls~N~l~-------------~lp~~~~~l~~L 488 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH--LEQLLLVTHLDLSHNRLR-------------ALPPALAALRCL 488 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC--GGGGTTCCEEECCSSCCC-------------CCCGGGGGCTTC
T ss_pred hhhhhhhcccccccCccCceEEEecCCC-CCCCcC--ccccccCcEeecCccccc-------------ccchhhhcCCCC
Confidence 321 1111 1246777777775 666664 677777777777776653 123456667777
Q ss_pred CeeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCC--C-cccCCCCccEEEeecCCchhh
Q 003753 651 QEISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDL--T-CIVYIPRLRFLFAKDCPSLEE 727 (798)
Q Consensus 651 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l--~-~l~~l~~L~~L~L~~~~~l~~ 727 (798)
+.|+++.+....++ .. ..+ ++|+.|+|++|.++.+ | .++.+++|+.|+|++|+ +..
T Consensus 489 ~~L~Ls~N~l~~lp----~l---------------~~l-~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~ 547 (567)
T 1dce_A 489 EVLQASDNALENVD----GV---------------ANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQ 547 (567)
T ss_dssp CEEECCSSCCCCCG----GG---------------TTC-SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGG
T ss_pred CEEECCCCCCCCCc----cc---------------CCC-CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCC
Confidence 77777665544432 11 123 7899999999977766 3 58889999999999854 444
Q ss_pred hhccccccCCCCcccccccccceeec
Q 003753 728 IIASDLRFEPSEENLSMFLHLRQAYF 753 (798)
Q Consensus 728 l~~~~~~~~~~~~~~~~~~~L~~L~L 753 (798)
++. ........+|+|+.|++
T Consensus 548 ~~~------~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 548 EEG------IQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSS------CTTHHHHHCTTCSEEEC
T ss_pred Ccc------HHHHHHHHCcccCccCC
Confidence 422 11122345889998864
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.40 E-value=6.7e-13 Score=128.60 Aligned_cols=126 Identities=17% Similarity=0.216 Sum_probs=108.7
Q ss_pred eeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHH-HHhcCCceeEEeCCCCcccccc-cccccCCCCCCEEEcC
Q 003753 495 VRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENK-FFKSMYALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLS 572 (798)
Q Consensus 495 ~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~Ls 572 (798)
+.+.+.++ .++.+|..+.. +|++|++++|.+..++.. +|..+++|++|+|++| .++.+ |..+..+++|++|+|+
T Consensus 11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECC
Confidence 56788888 88999865543 899999999999988864 5899999999999999 89887 7789999999999999
Q ss_pred CCCCcccCc-cccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCC
Q 003753 573 NTNICELPI-GIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 573 ~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 625 (798)
+|.++.+|. .+.++++|++|++++|. +..+++..+..+++|++|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999998865 48899999999999997 77775555899999999999998765
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=2.6e-13 Score=129.60 Aligned_cols=106 Identities=26% Similarity=0.292 Sum_probs=57.1
Q ss_pred CCCcceeeeecccccccccHHHHhcCC-ceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCccc-cCCCcccE
Q 003753 514 CSPRLLTLLVRYTMIKEFENKFFKSMY-ALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGI-KSCTHLRT 591 (798)
Q Consensus 514 ~~~~L~~L~l~~~~~~~l~~~~~~~l~-~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i-~~l~~L~~ 591 (798)
.+++|+.|++++|.+..++. +..+. +|++|++++| .++.+ ..++.+++|++|++++|.+..+|..+ ..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 34555555555555555532 22332 5666666665 55555 34555556666666666555555433 55556666
Q ss_pred EeCCCCCCcccccc-hhhcCCCCCccccccCCCC
Q 003753 592 LLLDGTENLKAIPV-GMLSSLLSLRVFSWVPTRY 624 (798)
Q Consensus 592 L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~ 624 (798)
|++++|. +..+|. ..+..+++|++|++++|.+
T Consensus 93 L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 93 LILTNNS-LVELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp EECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred EECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC
Confidence 6666554 555554 1255555666666655554
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=3.6e-13 Score=127.56 Aligned_cols=135 Identities=18% Similarity=0.142 Sum_probs=112.8
Q ss_pred CCCcceeeeecccccc--cccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcc-cCccccCCCccc
Q 003753 514 CSPRLLTLLVRYTMIK--EFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICE-LPIGIKSCTHLR 590 (798)
Q Consensus 514 ~~~~L~~L~l~~~~~~--~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~-lp~~i~~l~~L~ 590 (798)
..++|++|++++|.+. .+|.. +..+++|++|++++| .++.+ ..++.+++|++|++++|.+.. +|..+.++++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 3478999999999998 88876 799999999999999 89988 779999999999999999988 777777899999
Q ss_pred EEeCCCCCCcccccc-hhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEeccc
Q 003753 591 TLLLDGTENLKAIPV-GMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTID 661 (798)
Q Consensus 591 ~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 661 (798)
+|++++|. +..+|. ..+..+++|++|++++|.+... .......+..+++|+.|++..+...
T Consensus 99 ~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~---------~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 99 HLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNL---------NDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTS---------TTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcch---------HHHHHHHHHhCccCcEecCCCCChh
Confidence 99999997 888763 3489999999999999987520 0111246788999999998876543
No 131
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.39 E-value=4.1e-11 Score=130.02 Aligned_cols=300 Identities=15% Similarity=0.112 Sum_probs=184.2
Q ss_pred cccchhHHHHHHHHHhhc----CCceEEEEEecCCchHHHHHHHHHHHhhhhc---CCCCeEEEEEcCCccCHHHHHHHH
Q 003753 131 NIVGIESRLSEVWRYIED----DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMS---HKFGAVIMVKASTELNIEKIQDVI 203 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~i 203 (798)
.++||+.+++++.+++.. ...+.+.|+|++|+||||+|+.+++...... ..-...+|+++....+...+...+
T Consensus 20 ~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 99 (387)
T 2v1u_A 20 VLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAI 99 (387)
T ss_dssp CCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHH
Confidence 699999999999998843 4567899999999999999999988763210 112356788888888899999999
Q ss_pred HHHcCCCCCCCccccCCHHHHHHHHHHHhc--CCcEEEEEecccCcccc---ccc-----CCCC----CCCcEEEEeCCc
Q 003753 204 RSRLGIDPDGDKWKNRDDQGRAAEIFRRLS--NKKFALLLDDLRERIEL---SEA-----GVPV----QNASKIVFTTIF 269 (798)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~~~---~~~-----~~p~----~~gs~iivTTR~ 269 (798)
+.+++.... ....+..+....+.+.+. +++.+|||||++....- ... ..+. ..+..+|+||+.
T Consensus 100 ~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 100 AEAVGVRVP---FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHSCCCC---SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 999976432 133445666677777764 46889999999864321 111 1111 456678888876
Q ss_pred hHH--------hhhcCCCcceeccCCChHHHHHHHHHhccC--cccCCChhHHHHHHHHHHHhC---CCch-HHHHHHHH
Q 003753 270 EEV--------CSSMSVDWRFKVDYLPQEEAWNLFRLKVTD--EVLNSHPEIRELAETVANMCG---GLPL-ALVTIGSA 335 (798)
Q Consensus 270 ~~v--------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~---glPL-ai~~~g~~ 335 (798)
... ...+. ...+.+++++.++..+++.+.+.. .....++ +..+.+++.++ |.|- |+..+...
T Consensus 177 ~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp STTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 532 22221 147899999999999999987642 1111122 34667788887 9994 33333222
Q ss_pred h--c---C--CCChhHHHHHHHHHhcCCCCCCCcccchhhhhhhhhcCCCchhHhHHHHhhc-CCCCCceecHHHHHHHH
Q 003753 336 M--A---S--RRDPDNWRYAIEELQRYPSGFESIGTHVFPLLKFSYDRLTSETHKTCFLYGS-LFPRNQIIMKDELIELW 407 (798)
Q Consensus 336 l--~---~--~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s-~fp~~~~i~~~~li~~W 407 (798)
. . . .-+.+.+..+++... ...+.-++..|+++ .+..+...+ ++.....+....+.+..
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~ 318 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEIE-------------RDRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERY 318 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHH-------------HHHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHH
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHh-------------hchHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 1 1 1 124556666555432 12345567889886 565555444 33322245445333332
Q ss_pred ----HhcCCCcCCccHHHHHHhHHHHHHHHHHcccccccccC-CCcCcEEEccch
Q 003753 408 ----IGEGLLRDSHNIAVARREGKFILESLKLACLLEEVEVN-NSEDFVKMHNML 457 (798)
Q Consensus 408 ----~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~-~~~~~~~mHdlv 457 (798)
-..| ..+. .......+++.|...++++....+ +..+.++.+.+.
T Consensus 319 ~~~~~~~~-~~~~-----~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~~~~l~ 367 (387)
T 2v1u_A 319 KELTSTLG-LEHV-----TLRRVSGIISELDMLGIVKSRVVSRGRYGKTREVSLD 367 (387)
T ss_dssp HHHHHHTT-CCCC-----CHHHHHHHHHHHHHTTSEEEEEEECGGGCEEEEEEEC
T ss_pred HHHHHhcC-CCCC-----CHHHHHHHHHHHHhCCCeEEEeecCCCCCceeEEEec
Confidence 2223 2221 134566789999999999985422 224445554443
No 132
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.38 E-value=9.5e-14 Score=160.22 Aligned_cols=213 Identities=16% Similarity=0.114 Sum_probs=101.2
Q ss_pred hceeeEEeecCCCCCC--CCCCCCCCCcceeeeecccccccccHHH----HhcCCceeEEeCCCCcc--cc--ccccccc
Q 003753 492 KEAVRVSLWRSPSIDS--LSPTPPCSPRLLTLLVRYTMIKEFENKF----FKSMYALRVLDSSQNAK--LS--KLHVGEG 561 (798)
Q Consensus 492 ~~l~~lsl~~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~l~~~~----~~~l~~Lr~L~L~~~~~--i~--~lp~~i~ 561 (798)
++++.|.+.++..+.. ++.....+++|++|++++|.+....... ...+++|++|++++| . +. .++.-+.
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL-ASEVSFSALERLVT 208 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTC-CSCCCHHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEeccc-CCcCCHHHHHHHHH
Confidence 3556666655422211 2211124566666666666544322221 224456666666666 3 11 1222223
Q ss_pred CCCCCCEEEcCCC-CCcccCccccCCCcccEEeCCCCC-------------------Ccc-----------cccchhhcC
Q 003753 562 ELIDLQYLNLSNT-NICELPIGIKSCTHLRTLLLDGTE-------------------NLK-----------AIPVGMLSS 610 (798)
Q Consensus 562 ~L~~L~~L~Ls~~-~i~~lp~~i~~l~~L~~L~l~~~~-------------------~l~-----------~lp~~~i~~ 610 (798)
.+++|++|++++| .+..+|..+..+++|++|+++++. .+. .+|.. +..
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~-~~~ 287 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV-YSV 287 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGG-HHH
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHH-HHh
Confidence 4566666666666 444455555556666666544331 011 11111 234
Q ss_pred CCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecccchhhhhhhhhhcccceeeee---------
Q 003753 611 LLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM--------- 681 (798)
Q Consensus 611 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l--------- 681 (798)
+++|++|++++|.+. ......-+.++++|+.|++..+ .....+......+++|+.|.+
T Consensus 288 ~~~L~~L~L~~~~l~-----------~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~ 354 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQ-----------SYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVME 354 (594)
T ss_dssp HTTCCEEECTTCCCC-----------HHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSS
T ss_pred hCCCCEEEccCCCCC-----------HHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccc
Confidence 566777777666533 1112223557778888887644 111122222223456666655
Q ss_pred ---ccCc-------hhhhccCceEEeeccCCCCC--Cccc-CCCCccEEEee
Q 003753 682 ---GLPE-------AIFSQDLQDLSIINCSIKDL--TCIV-YIPRLRFLFAK 720 (798)
Q Consensus 682 ---~lp~-------~~lp~~L~~L~L~~~~l~~l--~~l~-~l~~L~~L~L~ 720 (798)
.+.. ..+ ++|++|.++++.++.. ..+. .+++|+.|+++
T Consensus 355 ~~~~l~~~~l~~l~~~~-~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 355 PNVALTEQGLVSVSMGC-PKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp CSSCCCHHHHHHHHHHC-TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred cCCCCCHHHHHHHHHhc-hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 1111 224 5666665555554432 1222 46667777776
No 133
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.38 E-value=6.6e-11 Score=128.54 Aligned_cols=287 Identities=15% Similarity=0.132 Sum_probs=179.2
Q ss_pred cccchhHHHHHHHHHhhc----CCce--EEEEEecCCchHHHHHHHHHHHhhhhcCC-CCeEEEEEcCCccCHHHHHHHH
Q 003753 131 NIVGIESRLSEVWRYIED----DGVK--IIGLYGVRGVGKSTLLKQLNDTFSDMSHK-FGAVIMVKASTELNIEKIQDVI 203 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-f~~~~wv~vs~~~~~~~~~~~i 203 (798)
.++||+.+++++.+++.. .... .+.|+|++|+||||||+.+++... .. -..++|++++...+...+...+
T Consensus 18 ~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK---DKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT---TSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh---hhcCeeEEEEeCccCCCHHHHHHHH
Confidence 699999999999999854 2334 899999999999999999998872 22 2357788888888888999999
Q ss_pred HHHcCCCCCCCccccCCHHHHHHHHHHHhc--CCcEEEEEecccCcc-----cccccCCC-CC---CCcEEEEeCCchHH
Q 003753 204 RSRLGIDPDGDKWKNRDDQGRAAEIFRRLS--NKKFALLLDDLRERI-----ELSEAGVP-VQ---NASKIVFTTIFEEV 272 (798)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~-----~~~~~~~p-~~---~gs~iivTTR~~~v 272 (798)
+..++..... ...+.......+...+. +++.+||||+++... .+...... .. .+..||++|+....
T Consensus 95 ~~~l~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 95 ARSLNIPFPR---RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHTTCCCCS---SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHhCccCCC---CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 9998764321 23345566666666654 568999999998752 11111111 11 46788888876644
Q ss_pred hhhcC-------CCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHh---------CCCchHHHHHHHHh
Q 003753 273 CSSMS-------VDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMC---------GGLPLALVTIGSAM 336 (798)
Q Consensus 273 ~~~~~-------~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c---------~glPLai~~~g~~l 336 (798)
...+. ....+.+++++.++..+++...+....... .--.+..+.+++.+ +|.|-.+..+....
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG-SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT-SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 33221 113589999999999999988764311000 11135678889999 78875444433221
Q ss_pred c------CC--CChhHHHHHHHHHhcCCCCCCCcccchhhhhhhhhcCCCchhHhHHHHhhcCCC---CCceecHHHHHH
Q 003753 337 A------SR--RDPDNWRYAIEELQRYPSGFESIGTHVFPLLKFSYDRLTSETHKTCFLYGSLFP---RNQIIMKDELIE 405 (798)
Q Consensus 337 ~------~~--~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp---~~~~i~~~~li~ 405 (798)
. .. -+.+....+..... ...+.-.+..|+.+ .+.++..++.+. .+..+....+..
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~ 316 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVL-------------FGISEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAEE 316 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHS-------------CCCCHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHh-------------hhhHHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHHH
Confidence 1 11 12233333333221 12233446678875 676666666543 221455555555
Q ss_pred HHHh----cCCCcCCccHHHHHHhHHHHHHHHHHccccccccc
Q 003753 406 LWIG----EGLLRDSHNIAVARREGKFILESLKLACLLEEVEV 444 (798)
Q Consensus 406 ~W~a----~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~ 444 (798)
.+-. .|...-. ......++++|...+++.....
T Consensus 317 ~~~~~~~~~~~~~~~------~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 317 SYKIVCEEYGERPRV------HSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHHHHHHTTCCCCC------HHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHHHHHcCCCCCC------HHHHHHHHHHHHhCCCeEEeee
Confidence 4432 2321111 2446678999999999998653
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.37 E-value=1.7e-12 Score=123.93 Aligned_cols=127 Identities=23% Similarity=0.334 Sum_probs=110.4
Q ss_pred eeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccccc-ccCCCCCCEEEcC
Q 003753 494 AVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVG-EGELIDLQYLNLS 572 (798)
Q Consensus 494 l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~Ls 572 (798)
.+.+.+.++ .+..+|..+ .++|++|++++|.+..++...|..+++|++|++++| .++.+|.. +..+++|++|+++
T Consensus 9 ~~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSS-CCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCC-CCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECC
Confidence 346777777 888888443 479999999999999999887899999999999999 89988754 6899999999999
Q ss_pred CCCCcccCcc-ccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCC
Q 003753 573 NTNICELPIG-IKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 573 ~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 625 (798)
+|.++.+|.. +..+++|++|++++|. +..+|...+..+++|++|++++|.+.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 9999998764 6889999999999997 88999886788999999999998765
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=1.7e-13 Score=160.32 Aligned_cols=88 Identities=24% Similarity=0.255 Sum_probs=46.4
Q ss_pred HHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCC
Q 003753 534 KFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLS 613 (798)
Q Consensus 534 ~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~ 613 (798)
..|..+.+|++|+|++| .+..+|..+..+++|++|+|++|.++.+|..+++|++|++|+|++|. +..+|.. ++.|++
T Consensus 218 ~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~ 294 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE-LGSCFQ 294 (727)
T ss_dssp ----CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS-GGGGTT
T ss_pred hhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChh-hcCCCC
Confidence 33555555555555555 55555555555555555555555555555555555555555555554 4455554 555555
Q ss_pred CccccccCCCC
Q 003753 614 LRVFSWVPTRY 624 (798)
Q Consensus 614 L~~L~l~~~~~ 624 (798)
|++|++++|.+
T Consensus 295 L~~L~L~~N~l 305 (727)
T 4b8c_D 295 LKYFYFFDNMV 305 (727)
T ss_dssp CSEEECCSSCC
T ss_pred CCEEECCCCCC
Confidence 55555555544
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=3.9e-13 Score=124.50 Aligned_cols=128 Identities=17% Similarity=0.241 Sum_probs=104.1
Q ss_pred CCCcceeeeecccccc--cccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcc-cCccccCCCccc
Q 003753 514 CSPRLLTLLVRYTMIK--EFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICE-LPIGIKSCTHLR 590 (798)
Q Consensus 514 ~~~~L~~L~l~~~~~~--~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~-lp~~i~~l~~L~ 590 (798)
..++|+.|++++|.+. .+|.. +..+++|++|++++| .++.+ ..++.+++|++|++++|.+.. +|..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 3478999999999888 77764 789999999999999 88888 778999999999999999988 777777899999
Q ss_pred EEeCCCCCCccccc--chhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEE
Q 003753 591 TLLLDGTENLKAIP--VGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISV 655 (798)
Q Consensus 591 ~L~l~~~~~l~~lp--~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l 655 (798)
+|++++|. +..+| .. ++.+++|++|++++|.+... .......+..+++|+.|++
T Consensus 92 ~L~ls~N~-i~~~~~~~~-~~~l~~L~~L~l~~N~l~~~---------~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 92 HLNLSGNK-IKDLSTIEP-LKKLENLKSLDLFNCEVTNL---------NDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EEECTTSC-CCSHHHHGG-GGGCTTCCEEECTTCGGGGS---------TTHHHHHHHHCTTCCEETT
T ss_pred EEECCCCc-CCChHHHHH-HhhCCCCCEEeCcCCcccch---------HHHHHHHHHHCCCcccccC
Confidence 99999997 77765 44 88999999999999877510 0111245777888887765
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=1.6e-12 Score=124.09 Aligned_cols=130 Identities=16% Similarity=0.169 Sum_probs=113.5
Q ss_pred chhceeeEEeecCCCCCCCCCCCCCCC-cceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccc-cCCCCCC
Q 003753 490 SWKEAVRVSLWRSPSIDSLSPTPPCSP-RLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGE-GELIDLQ 567 (798)
Q Consensus 490 ~~~~l~~lsl~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i-~~L~~L~ 567 (798)
...+++.|.+.+| .+..++ .+..+. +|++|++++|.+..++ .|..+++|++|++++| .++.+|..+ +.+++|+
T Consensus 17 ~~~~L~~L~l~~n-~l~~i~-~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 17 NAVRDRELDLRGY-KIPVIE-NLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLT 91 (176)
T ss_dssp CTTSCEEEECTTS-CCCSCC-CGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCC
T ss_pred CcCCceEEEeeCC-CCchhH-HhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCC-cccccCcchhhcCCCCC
Confidence 3458999999999 999887 455544 9999999999998883 3899999999999999 999998666 8999999
Q ss_pred EEEcCCCCCcccCc--cccCCCcccEEeCCCCCCcccccch---hhcCCCCCccccccCCCCC
Q 003753 568 YLNLSNTNICELPI--GIKSCTHLRTLLLDGTENLKAIPVG---MLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 568 ~L~Ls~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~---~i~~L~~L~~L~l~~~~~~ 625 (798)
+|++++|.+..+|. .+..+++|++|++++|. +..+|.. ++..+++|++|+++.|...
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999999987 78999999999999998 8888864 5889999999999887643
No 138
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=9e-11 Score=127.26 Aligned_cols=300 Identities=10% Similarity=0.067 Sum_probs=177.3
Q ss_pred cccchhHHHHHHHHHhhc----CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHH
Q 003753 131 NIVGIESRLSEVWRYIED----DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSR 206 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 206 (798)
.++||+.+++++.+++.. .....+.|+|++|+||||||+.+++........-..++|+.+....+...+...++.+
T Consensus 21 ~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~ 100 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLES 100 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTT
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 699999999999998863 4567899999999999999999998763211102357788877777788888888888
Q ss_pred cCCCCCCCccccCCHHHHHHHHHHHhc--CCcEEEEEecccCccc------cccc-CCC---CCCCcEEEEeCCchHHhh
Q 003753 207 LGIDPDGDKWKNRDDQGRAAEIFRRLS--NKKFALLLDDLRERIE------LSEA-GVP---VQNASKIVFTTIFEEVCS 274 (798)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~~------~~~~-~~p---~~~gs~iivTTR~~~v~~ 274 (798)
++..... ...+..+....+.+.+. +++.+||||+++...+ +..+ ... ...+..+|+||+......
T Consensus 101 l~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 101 LDVKVPF---TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TSCCCCS---SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred hCCCCCC---CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 7654321 23345566666666665 3589999999876421 1111 001 133556777887664322
Q ss_pred hcC-------CCcceeccCCChHHHHHHHHHhccCcc--cCCChhHHHHHHHHHHHhC---CCchHHHHHHHHhc-----
Q 003753 275 SMS-------VDWRFKVDYLPQEEAWNLFRLKVTDEV--LNSHPEIRELAETVANMCG---GLPLALVTIGSAMA----- 337 (798)
Q Consensus 275 ~~~-------~~~~~~l~~L~~~~a~~Lf~~~~~~~~--~~~~~~~~~~~~~i~~~c~---glPLai~~~g~~l~----- 337 (798)
.+. ....+.+++++.++..+++.+.+.... .... .+..+.+++.++ |.|..+..+.....
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAER 254 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 221 114789999999999999998653211 1122 345666777776 99984433322211
Q ss_pred -C--CCChhHHHHHHHHHhcCCCCCCCcccchhhhhhhhhcCCCchhHhHHHHhhcCCCC-C-ceecHHHHHHHH----H
Q 003753 338 -S--RRDPDNWRYAIEELQRYPSGFESIGTHVFPLLKFSYDRLTSETHKTCFLYGSLFPR-N-QIIMKDELIELW----I 408 (798)
Q Consensus 338 -~--~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~-~-~~i~~~~li~~W----~ 408 (798)
. .-+.+.++.+++... ...+.-++..+|++ .+..+..++...+ + ..+....+.+.. -
T Consensus 255 ~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~~-~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~ 320 (386)
T 2qby_A 255 MKDTKVKEEYVYMAKEEIE-------------RDRVRDIILTLPFH-SKLVLMAVVSISSEENVVSTTGAVYETYLNICK 320 (386)
T ss_dssp TTCSSCCHHHHHHHHHHHH-------------HHHHHHHHHTSCHH-HHHHHHHHHHHC-----CEEHHHHHHHHHHHHH
T ss_pred cCCCccCHHHHHHHHHHHh-------------hchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence 1 124455555544321 23455567788875 5655555553211 1 123333332221 1
Q ss_pred hcCCCcCCccHHHHHHhHHHHHHHHHHccccccccc-CCCcCcEEEccc
Q 003753 409 GEGLLRDSHNIAVARREGKFILESLKLACLLEEVEV-NNSEDFVKMHNM 456 (798)
Q Consensus 409 a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~-~~~~~~~~mHdl 456 (798)
..| +.+. .......+++.|...++++.... .+....|+.+.+
T Consensus 321 ~~g-~~~~-----~~~~~~~~l~~L~~~gli~~~~~~~~~~g~y~~~~l 363 (386)
T 2qby_A 321 KLG-VEAV-----TQRRVSDIINELDMVGILTAKVVNRGRYGKTKEIGL 363 (386)
T ss_dssp HHT-CCCC-----CHHHHHHHHHHHHHHTSEEEEECCCTTSCCCEEEEE
T ss_pred hcC-CCCC-----CHHHHHHHHHHHHhCCCEEEEeecCCCCCCeEEEEe
Confidence 112 1111 12345678999999999987532 122344555543
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=2.4e-12 Score=150.67 Aligned_cols=111 Identities=18% Similarity=0.199 Sum_probs=62.6
Q ss_pred CCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCccccCCCccc
Q 003753 511 TPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKSCTHLR 590 (798)
Q Consensus 511 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~ 590 (798)
.+..+++|++|+|++|.+..+|.. +.++++|++|+|++| .++.+|..+++|++|++|+|++|.|+.+|..+++|++|+
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred hhccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 344555556666665555555555 335555666666665 555555555556666666666665555555555566666
Q ss_pred EEeCCCCCCcccccchhhcCCCCCccccccCCCCC
Q 003753 591 TLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 591 ~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 625 (798)
+|+|++|. +..+|.+ |+.|++|++|++++|.+.
T Consensus 297 ~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 297 YFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp EEECCSSC-CCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred EEECCCCC-CCccChh-hhcCCCccEEeCCCCccC
Confidence 66665554 5555555 555666666666555544
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.29 E-value=3.6e-12 Score=123.41 Aligned_cols=125 Identities=20% Similarity=0.228 Sum_probs=108.7
Q ss_pred eeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccC-ccccCCCcccEEeCCCC
Q 003753 519 LTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELP-IGIKSCTHLRTLLLDGT 597 (798)
Q Consensus 519 ~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp-~~i~~l~~L~~L~l~~~ 597 (798)
++++++++.++.+|..+ .++|++|+|++| .++.+|..+..+++|++|+|++|.|+.++ ..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57899999999999763 368999999999 99999999999999999999999999986 46999999999999999
Q ss_pred CCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecc
Q 003753 598 ENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTI 660 (798)
Q Consensus 598 ~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 660 (798)
. +..+|...+..+++|++|++++|.+. ......+..+++|+.|++..+..
T Consensus 89 ~-l~~i~~~~f~~l~~L~~L~L~~N~l~------------~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 R-LRCIPPRTFDGLKSLRLLSLHGNDIS------------VVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp C-CCBCCTTTTTTCTTCCEEECCSSCCC------------BCCTTTTTTCTTCCEEECCSSCE
T ss_pred c-cCEeCHHHhCCCCCCCEEECCCCCCC------------eeChhhhhcCccccEEEeCCCCe
Confidence 8 88998877999999999999999875 22334577889999999976654
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.27 E-value=3.2e-12 Score=123.74 Aligned_cols=126 Identities=18% Similarity=0.263 Sum_probs=109.3
Q ss_pred eeeeecccccccccHHHHhcCCceeEEeCCCCccccccccc--ccCCCCCCEEEcCCCCCccc-CccccCCCcccEEeCC
Q 003753 519 LTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVG--EGELIDLQYLNLSNTNICEL-PIGIKSCTHLRTLLLD 595 (798)
Q Consensus 519 ~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~--i~~L~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~l~ 595 (798)
++++++++.++.+|..++ .+|++|++++| .++.+|.. ++.+++|++|+|++|.++.+ |..+.++++|++|+++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 789999999999998632 38999999999 99998764 89999999999999999988 7789999999999999
Q ss_pred CCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEeccc
Q 003753 596 GTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTID 661 (798)
Q Consensus 596 ~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 661 (798)
+|. +..++...+..+++|++|++++|.+. ......+..+++|+.|+++.+...
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~------------~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENK-IKEISNKMFLGLHQLKTLNLYDNQIS------------CVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCC-CCEECSSSSTTCTTCCEEECCSSCCC------------EECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCc-CCccCHHHhcCCCCCCEEECCCCcCC------------eeCHHHhhcCCCCCEEEeCCCCcc
Confidence 998 88888777899999999999999875 344566788899999999766543
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=1e-11 Score=140.78 Aligned_cols=101 Identities=20% Similarity=0.209 Sum_probs=51.3
Q ss_pred ceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCccccCCCcccEEeCCCC
Q 003753 518 LLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKSCTHLRTLLLDGT 597 (798)
Q Consensus 518 L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~ 597 (798)
|++|++++|.++.+|. |+++++|++|+|++| .++.+|..++.+++|++|+|++|.++.+| .++++++|++|++++|
T Consensus 443 L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp CSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred ceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 4445555554444443 455555555555555 55555555555555555555555555554 4555555555555555
Q ss_pred CCcccc--cchhhcCCCCCccccccCCCC
Q 003753 598 ENLKAI--PVGMLSSLLSLRVFSWVPTRY 624 (798)
Q Consensus 598 ~~l~~l--p~~~i~~L~~L~~L~l~~~~~ 624 (798)
. +..+ |.. ++.+++|++|++++|.+
T Consensus 519 ~-l~~~~~p~~-l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 519 R-LQQSAAIQP-LVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp C-CCSSSTTGG-GGGCTTCCEEECTTSGG
T ss_pred C-CCCCCCcHH-HhcCCCCCEEEecCCcC
Confidence 4 4444 333 45555555555555544
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.19 E-value=3.3e-11 Score=114.33 Aligned_cols=105 Identities=20% Similarity=0.272 Sum_probs=62.6
Q ss_pred eeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccccc-ccCCCCCCEEEcCC
Q 003753 495 VRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVG-EGELIDLQYLNLSN 573 (798)
Q Consensus 495 ~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~Ls~ 573 (798)
+.+.+.++ .+.++|..+. ++|++|++++|.+..+++..|.++++|++|+|++| .++.+|.. +..+++|++|+|++
T Consensus 15 ~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 34555555 6666664333 56666666666666665555666666666666666 66666544 35666666666666
Q ss_pred CCCcccCcc-ccCCCcccEEeCCCCCCccccc
Q 003753 574 TNICELPIG-IKSCTHLRTLLLDGTENLKAIP 604 (798)
Q Consensus 574 ~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp 604 (798)
|++..+|.. +..+++|++|++++|. +...+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~ 121 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP-WDCEC 121 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC-BCTTB
T ss_pred CccceeCHHHhccccCCCEEEeCCCC-ccccc
Confidence 666666543 5566666666666665 44333
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.18 E-value=2e-13 Score=133.07 Aligned_cols=116 Identities=20% Similarity=0.218 Sum_probs=93.3
Q ss_pred CCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCcccc
Q 003753 505 IDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIK 584 (798)
Q Consensus 505 ~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~ 584 (798)
++.+|..+..+++|++|++++|.+..+| .+.++++|++|++++| .++.+|..+..+++|++|++++|.+..+| .+.
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~ 112 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIE 112 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccc
Confidence 4445545567888899999888888887 3888888999999988 88888887777888999999988888887 688
Q ss_pred CCCcccEEeCCCCCCcccccc-hhhcCCCCCccccccCCCCC
Q 003753 585 SCTHLRTLLLDGTENLKAIPV-GMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 585 ~l~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~ 625 (798)
.+++|++|++++|. +..+|. ..+..+++|++|++++|.+.
T Consensus 113 ~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 113 KLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred cCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccc
Confidence 88889999998887 777664 33788888999988887653
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.15 E-value=1.3e-12 Score=127.26 Aligned_cols=127 Identities=16% Similarity=0.219 Sum_probs=106.4
Q ss_pred ceeeeeccc--ccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCcccCccccCCCcccEEeCC
Q 003753 518 LLTLLVRYT--MIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICELPIGIKSCTHLRTLLLD 595 (798)
Q Consensus 518 L~~L~l~~~--~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~l~ 595 (798)
|+.+.+.++ .++.+|.. |..+++|++|++++| .++.+| .+..+++|++|++++|.+..+|..+..+++|++|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHH-HhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 444444443 56667765 899999999999999 999999 8999999999999999999999888889999999999
Q ss_pred CCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEeccc
Q 003753 596 GTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTID 661 (798)
Q Consensus 596 ~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 661 (798)
+|. +..+| . +..+++|++|++++|.+. ....+..+..+++|+.|+++.+...
T Consensus 102 ~N~-l~~l~-~-~~~l~~L~~L~l~~N~i~-----------~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 102 YNQ-IASLS-G-IEKLVNLRVLYMSNNKIT-----------NWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EEE-CCCHH-H-HHHHHHSSEEEESEEECC-----------CHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCc-CCcCC-c-cccCCCCCEEECCCCcCC-----------chhHHHHHhcCCCCCEEEecCCccc
Confidence 997 88888 4 899999999999999875 2223467889999999999876543
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.14 E-value=5.8e-11 Score=112.67 Aligned_cols=103 Identities=21% Similarity=0.259 Sum_probs=90.9
Q ss_pred ceeeeecccccccccHHHHhcCCceeEEeCCCCcccccc-cccccCCCCCCEEEcCCCCCcccCcc-ccCCCcccEEeCC
Q 003753 518 LLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLSNTNICELPIG-IKSCTHLRTLLLD 595 (798)
Q Consensus 518 L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~l~ 595 (798)
-+.+++++|.+..+|..+ .++|++|+|++| .++.+ |..+.++++|++|+|++|+++.+|.. +.++++|++|+|+
T Consensus 14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCCccCCCc---CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 368899999999999863 388999999999 89988 66789999999999999999999875 5899999999999
Q ss_pred CCCCcccccchhhcCCCCCccccccCCCCC
Q 003753 596 GTENLKAIPVGMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 596 ~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 625 (798)
+|. +..+|.+.+..+++|++|++++|.+.
T Consensus 90 ~N~-l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNH-LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSC-CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCc-cceeCHHHhccccCCCEEEeCCCCcc
Confidence 997 88999877899999999999998765
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=7e-11 Score=112.67 Aligned_cols=128 Identities=22% Similarity=0.229 Sum_probs=107.3
Q ss_pred cceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccc-cccCCCCCCEEEcCCCCCcccCcc-ccCCCcccEEeC
Q 003753 517 RLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHV-GEGELIDLQYLNLSNTNICELPIG-IKSCTHLRTLLL 594 (798)
Q Consensus 517 ~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~l 594 (798)
..+.++++++.+..+|.. -.++|++|++++| .++.+|. .++.+++|++|++++|.+..+|.. +..+++|++|++
T Consensus 8 ~~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTG---IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSSCCSSCCTT---CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCCCCccCCCC---CCCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 356889999999999865 3478999999999 8998865 468999999999999999999754 689999999999
Q ss_pred CCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEeccc
Q 003753 595 DGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTID 661 (798)
Q Consensus 595 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 661 (798)
++|. +..+|...+..+++|++|++++|.+. ......+..+++|+.|+++.+...
T Consensus 84 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~------------~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 84 HENK-LQSLPNGVFDKLTQLKELALDTNQLK------------SVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCCS------------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCC-ccccCHHHhhCCcccCEEECcCCcce------------EeCHHHhcCCcccCEEEecCCCee
Confidence 9997 88998877899999999999999875 222334677899999999876543
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.14 E-value=6.3e-11 Score=112.04 Aligned_cols=101 Identities=26% Similarity=0.307 Sum_probs=47.5
Q ss_pred eeeeecccccccccHHHHhcCCceeEEeCCCCcccccc-cccccCCCCCCEEEcCCCCCcccCcc-ccCCCcccEEeCCC
Q 003753 519 LTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLSNTNICELPIG-IKSCTHLRTLLLDG 596 (798)
Q Consensus 519 ~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~l~~ 596 (798)
++|++++|.++.+|... .++|++|+|++| .++.+ |..+..+++|++|+|++|+++.+|.. +.++++|++|+|++
T Consensus 12 ~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI---PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC---CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 34444444444444331 244455555555 44444 33444555555555555555544432 34455555555555
Q ss_pred CCCcccccchhhcCCCCCccccccCCCC
Q 003753 597 TENLKAIPVGMLSSLLSLRVFSWVPTRY 624 (798)
Q Consensus 597 ~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 624 (798)
|. +..+|.+.+..+++|++|++++|.+
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 54 4444444344555555555555443
No 149
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.13 E-value=8.7e-10 Score=111.02 Aligned_cols=195 Identities=13% Similarity=0.117 Sum_probs=112.9
Q ss_pred cccchhHHHHHHHHHhhcCC-ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 131 NIVGIESRLSEVWRYIEDDG-VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
+++||+..++.+..++..+. .+.+.|+|++|+||||+|+.+++.... ...+.. ........ ...+......
T Consensus 24 ~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~-~~~~~~------~~~~~~~~-~~~~~~~~~~ 95 (250)
T 1njg_A 24 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC-ETGITA------TPCGVCDN-CREIEQGRFV 95 (250)
T ss_dssp GCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC-TTCSCS------SCCSCSHH-HHHHHTTCCS
T ss_pred HHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC-CCCCCC------CCCcccHH-HHHHhccCCc
Confidence 69999999999999997654 358999999999999999999887631 111100 00000000 0011100000
Q ss_pred CCCCCccccCCHHHHHHHHHHHh-----cCCcEEEEEecccCcc--cccccC--CC-CCCCcEEEEeCCchHHh-h-hcC
Q 003753 210 DPDGDKWKNRDDQGRAAEIFRRL-----SNKKFALLLDDLRERI--ELSEAG--VP-VQNASKIVFTTIFEEVC-S-SMS 277 (798)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~--~~~~~~--~p-~~~gs~iivTTR~~~v~-~-~~~ 277 (798)
..-...............+.+.+ .+++.+||+||++... .+..+. +. ...+..+|+||+..... . ...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~ 175 (250)
T 1njg_A 96 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 175 (250)
T ss_dssp SEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred ceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHH
Confidence 00000000001111122222222 3468999999997642 222221 11 24567888888764321 1 112
Q ss_pred CCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHHHh
Q 003753 278 VDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGSAM 336 (798)
Q Consensus 278 ~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l 336 (798)
....+.+++++.++..+++.+.+.......+ .+..+.|++.|+|.|..+..+...+
T Consensus 176 r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 176 RCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhccCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2357899999999999999988754332222 3457889999999999988776544
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.13 E-value=9.7e-11 Score=110.72 Aligned_cols=105 Identities=20% Similarity=0.254 Sum_probs=92.6
Q ss_pred eeeEEeecCCCCCCCCCCCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccccc-ccCCCCCCEEEcC
Q 003753 494 AVRVSLWRSPSIDSLSPTPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVG-EGELIDLQYLNLS 572 (798)
Q Consensus 494 l~~lsl~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~Ls 572 (798)
.+.+++.++ .+..+|..+ .++|++|++++|.+..+++..|.++++|++|+|++| .++.+|.. +..+++|++|+|+
T Consensus 11 ~~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCC-CcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence 457888888 899999655 389999999999999998887999999999999999 99999765 5899999999999
Q ss_pred CCCCcccCc-cccCCCcccEEeCCCCCCcccc
Q 003753 573 NTNICELPI-GIKSCTHLRTLLLDGTENLKAI 603 (798)
Q Consensus 573 ~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~l 603 (798)
+|.++.+|. .+..+++|++|++++|. +...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNP-WDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-BCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCC-CCCC
Confidence 999999976 48899999999999997 4433
No 151
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.10 E-value=1.5e-09 Score=107.58 Aligned_cols=181 Identities=14% Similarity=0.167 Sum_probs=114.9
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCC-CeEEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKF-GAVIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
+++|++..++++.+++.....+.+.|+|++|+|||++|+.+++... ...+ ...+.+..+.......+...+......
T Consensus 18 ~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh--ccccccceEEeccccccChHHHHHHHHHHhcc
Confidence 6899999999999999876665699999999999999999988752 1222 224445544443333333222221111
Q ss_pred CCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc--cccc--CCC-CCCCcEEEEeCCchHHh-h-hcCCCcce
Q 003753 210 DPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE--LSEA--GVP-VQNASKIVFTTIFEEVC-S-SMSVDWRF 282 (798)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~--~~~~--~~p-~~~gs~iivTTR~~~v~-~-~~~~~~~~ 282 (798)
.. .-.+++.+||+||++.... ...+ .+. ...+.++|+||+..... . .......+
T Consensus 96 ~~-------------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i 156 (226)
T 2chg_A 96 AP-------------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (226)
T ss_dssp CC-------------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred cC-------------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCcee
Confidence 00 0125788999999986531 1111 011 34567888888765321 1 11122378
Q ss_pred eccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHHH
Q 003753 283 KVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGSA 335 (798)
Q Consensus 283 ~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~ 335 (798)
.+.+++.++..+++.+.+.......+ .+..+.+++.++|.|..+..+...
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 157 RFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999987754322222 345778889999999865554433
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=5.1e-10 Score=118.31 Aligned_cols=265 Identities=13% Similarity=0.029 Sum_probs=137.9
Q ss_pred chhceeeEEeecCCCCCCCCCCCCC-CCcceeeeecccccc--cccHHHHhcCCceeEEeCCCCcccccccccccC----
Q 003753 490 SWKEAVRVSLWRSPSIDSLSPTPPC-SPRLLTLLVRYTMIK--EFENKFFKSMYALRVLDSSQNAKLSKLHVGEGE---- 562 (798)
Q Consensus 490 ~~~~l~~lsl~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~~--~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~---- 562 (798)
.+.+++.|.+.++....++. .+.. +++|++|+|++|.+. ..+.. .++.++++.+..+ .+. +..+.+
T Consensus 23 ~~~~l~~L~l~g~i~~~~~~-~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~-~I~--~~aF~~~~~~ 95 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDFR-HLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMAN-FVP--AYAFSNVVNG 95 (329)
T ss_dssp HHHHCSEEEEEEEECHHHHH-HHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTT-EEC--TTTTEEEETT
T ss_pred hhCceeEEEEeccccHHHHH-HHHHhhccCeEEecCcceeEEecCccc---ccccccccccccc-ccC--HHHhcccccc
Confidence 45677888877641111111 1122 778889999988777 22222 2222344444444 221 123444
Q ss_pred ----CCCCCEEEcCCCCCcccCc-cccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcc
Q 003753 563 ----LIDLQYLNLSNTNICELPI-GIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVT 637 (798)
Q Consensus 563 ----L~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 637 (798)
+.+|+.|+|.+ .++.++. .|.+|++|+.|++.+|. +..++.+.|..+.++..+......... ...
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~--------~~~ 165 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYR--------FKN 165 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHH--------TST
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhh--------ccc
Confidence 67777777766 6666643 46667777777777665 556666666666555555443311000 000
Q ss_pred cccHHHhccCCCCC-eeEEEEecccchhhhhhh-hhhcccceeeee--ccCc-------hhhhccCceEEeeccCCCCCC
Q 003753 638 VLLLEELESLKHLQ-EISVIILTIDSLNKLKSS-LKLQSCIRRLVM--GLPE-------AIFSQDLQDLSIINCSIKDLT 706 (798)
Q Consensus 638 ~~~~~~L~~l~~L~-~L~l~~~~~~~~~~l~~~-~~~~~~L~~L~l--~lp~-------~~lp~~L~~L~L~~~~l~~l~ 706 (798)
......+.++.+|+ .+.+ .....+...... .....++..+.+ .+.. ..+ ++|+.|+|.+|+++.++
T Consensus 166 ~i~~~~f~~~~~L~~~i~~--~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~-~~L~~l~L~~n~i~~I~ 242 (329)
T 3sb4_A 166 RWEHFAFIEGEPLETTIQV--GAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYM-PNLVSLDISKTNATTIP 242 (329)
T ss_dssp TTTTSCEEESCCCEEEEEE--CTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHC-TTCCEEECTTBCCCEEC
T ss_pred cccccccccccccceeEEe--cCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhc-CCCeEEECCCCCcceec
Confidence 00001112222332 1111 111111111100 001112222222 0000 123 78999999988787776
Q ss_pred --cccCCCCccEEEeecCCchhhhhccccccCCCCcccccccccc-eeecCCccchhhccc-CCCCCCCcceeeeccCCC
Q 003753 707 --CIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLR-QAYFFKLPNLKNICH-KAMAFPSLERIYVHGCPS 782 (798)
Q Consensus 707 --~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~l~~i~~-~~~~~~~L~~L~l~~c~~ 782 (798)
.|..+++|+.|+|.++ ++.+.. ..+.++++|+ .+.+.+ .++.|.. .+..+++|+.|++.+ .+
T Consensus 243 ~~aF~~~~~L~~l~l~~n--i~~I~~---------~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~ 308 (329)
T 3sb4_A 243 DFTFAQKKYLLKIKLPHN--LKTIGQ---------RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DK 308 (329)
T ss_dssp TTTTTTCTTCCEEECCTT--CCEECT---------TTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SC
T ss_pred HhhhhCCCCCCEEECCcc--cceehH---------HHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-Cc
Confidence 4788889999999874 665532 4667788888 888876 6666654 455678888888754 25
Q ss_pred CCCCCC
Q 003753 783 LRKLPL 788 (798)
Q Consensus 783 L~~lp~ 788 (798)
++.++.
T Consensus 309 i~~I~~ 314 (329)
T 3sb4_A 309 ITTLGD 314 (329)
T ss_dssp CCEECT
T ss_pred cCccch
Confidence 555554
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.94 E-value=8.4e-10 Score=116.68 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=35.0
Q ss_pred ccCc-eEEeeccCCCCCC--cccCCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeec
Q 003753 690 QDLQ-DLSIINCSIKDLT--CIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYF 753 (798)
Q Consensus 690 ~~L~-~L~L~~~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L 753 (798)
++|+ .|.+.+ +++.++ .|..+++|+.|++++ +.+..+.. ..+.++++|+.++.
T Consensus 273 ~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~---------~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 273 GRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATG-DKITTLGD---------ELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECS-SCCCEECT---------TTTCTTCCCCEEEC
T ss_pred hhccEEEEEcc-cceEEchhhhhCCccCCEEEeCC-CccCccch---------hhhcCCcchhhhcc
Confidence 5677 777766 455443 477888888888866 34555532 35667788887764
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=1.1e-08 Score=110.62 Aligned_cols=238 Identities=14% Similarity=0.133 Sum_probs=156.0
Q ss_pred ceeeEEeecCCCCCCCCCCC-CCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccc-ccccCCCCCCEEE
Q 003753 493 EAVRVSLWRSPSIDSLSPTP-PCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLH-VGEGELIDLQYLN 570 (798)
Q Consensus 493 ~l~~lsl~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~ 570 (798)
.+..+.+.+ .+..++... .++ +|+.+.+..+ ++.++...|.++ +|+.+.+.. .++.++ ..+.++.+|+.++
T Consensus 114 ~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 114 GYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEE
T ss_pred CccEEEECC--ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeee
Confidence 455555554 356665433 444 7999998766 888888888885 699999986 477774 5788999999999
Q ss_pred cCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCCC
Q 003753 571 LSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKHL 650 (798)
Q Consensus 571 Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L 650 (798)
+++|+++.+|.....+.+|+.+.+..+ +..++...|.++++|+.+.+..+ +. ......+.+ .+|
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~------------~I~~~aF~~-~~L 250 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VS------------TIGQEAFRE-SGI 250 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CC------------EECTTTTTT-CCC
T ss_pred cCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-cc------------Ccccccccc-CCc
Confidence 999999999876666789999999854 88899888999999999998763 11 122233344 577
Q ss_pred CeeEEEEecccchhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCC-----CCC--cccCCCCccEEEeecCC
Q 003753 651 QEISVIILTIDSLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIK-----DLT--CIVYIPRLRFLFAKDCP 723 (798)
Q Consensus 651 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~-----~l~--~l~~l~~L~~L~L~~~~ 723 (798)
+.+.+. +....+...... .+ ++|+.+.+.++.+. .++ .+..+++|+.+.|.+
T Consensus 251 ~~i~lp-~~i~~I~~~aF~-----------------~c-~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-- 309 (401)
T 4fdw_A 251 TTVKLP-NGVTNIASRAFY-----------------YC-PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-- 309 (401)
T ss_dssp SEEEEE-TTCCEECTTTTT-----------------TC-TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--
T ss_pred cEEEeC-CCccEEChhHhh-----------------CC-CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--
Confidence 877773 222222222111 12 67777777766332 222 466777788777763
Q ss_pred chhhhhccccccCCCCcccccccccceeecCCccchhhcccC-CCCCCCcceeeeccCCCCCCCC
Q 003753 724 SLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHK-AMAFPSLERIYVHGCPSLRKLP 787 (798)
Q Consensus 724 ~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~-~~~~~~L~~L~l~~c~~L~~lp 787 (798)
.++.+.. ..+.++++|+.+.|.+ ++..|... +..+ +|+.+.+.++ .+..++
T Consensus 310 ~i~~I~~---------~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~ 361 (401)
T 4fdw_A 310 SIRILGQ---------GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVF 361 (401)
T ss_dssp TCCEECT---------TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCC
T ss_pred ceEEEhh---------hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccc
Confidence 3444422 3556677777777754 35555442 3345 7777777664 333333
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=2.4e-08 Score=107.90 Aligned_cols=232 Identities=13% Similarity=0.132 Sum_probs=164.0
Q ss_pred hceeeEEeecCCCCCCCCCCC-CCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEE
Q 003753 492 KEAVRVSLWRSPSIDSLSPTP-PCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLN 570 (798)
Q Consensus 492 ~~l~~lsl~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~ 570 (798)
.+++.+.+..+ +..++... .+ .+|+.+.+.+ .+..++...|.+|.+|+.++|++| .++.+|...-...+|+.+.
T Consensus 135 ~~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~ 209 (401)
T 4fdw_A 135 SQIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVL 209 (401)
T ss_dssp CCCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEE
T ss_pred CCccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEE
Confidence 36777777654 66666443 44 4799999986 688898888999999999999999 8999987665678999999
Q ss_pred cCCCCCcccC-ccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccCCC
Q 003753 571 LSNTNICELP-IGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESLKH 649 (798)
Q Consensus 571 Ls~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 649 (798)
+..+ ++.++ ..|.++.+|+.+++..+ +..++...|.+ .+|+.+.+..+ +. ......+.++++
T Consensus 210 lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~------------~I~~~aF~~c~~ 272 (401)
T 4fdw_A 210 LPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VT------------NIASRAFYYCPE 272 (401)
T ss_dssp CCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CC------------EECTTTTTTCTT
T ss_pred eCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-cc------------EEChhHhhCCCC
Confidence 9854 77774 46889999999999875 78898887877 78999998542 21 234456778899
Q ss_pred CCeeEEEEeccc-----chhhhhhhhhhcccceeeeeccCchhhhccCceEEeeccCCCCCC--cccCCCCccEEEeecC
Q 003753 650 LQEISVIILTID-----SLNKLKSSLKLQSCIRRLVMGLPEAIFSQDLQDLSIINCSIKDLT--CIVYIPRLRFLFAKDC 722 (798)
Q Consensus 650 L~~L~l~~~~~~-----~~~~l~~~~~~~~~L~~L~l~lp~~~lp~~L~~L~L~~~~l~~l~--~l~~l~~L~~L~L~~~ 722 (798)
|+.+.+..+... .+..... ..+ ++|+.+.|.++ ++.++ .+..+++|+.|.|..+
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF-----------------~~c-~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCL-----------------EGC-PKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTT-----------------TTC-TTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT
T ss_pred CCEEEeCCccccCCcccEECHHHh-----------------hCC-ccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc
Confidence 999988644322 1111111 123 68888888853 55554 5788999999999653
Q ss_pred CchhhhhccccccCCCCcccccccccceeecCCccchhhcccC-CCCCC-Ccceeee
Q 003753 723 PSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHK-AMAFP-SLERIYV 777 (798)
Q Consensus 723 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~-~~~~~-~L~~L~l 777 (798)
++.+.. ..+.++ +|+.+.+.++ .+..+... ...++ +++.|.+
T Consensus 334 --l~~I~~---------~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 334 --VTQINF---------SAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp --CCEECT---------TSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEE
T ss_pred --ccEEcH---------HhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEe
Confidence 555522 456677 9999999984 44444332 23343 5566655
No 156
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.90 E-value=9.6e-09 Score=108.18 Aligned_cols=180 Identities=14% Similarity=0.184 Sum_probs=111.9
Q ss_pred CcccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCC-CeEEEEEcCCccCHHHHHHHHHHHcC
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKF-GAVIMVKASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~i~~~l~ 208 (798)
.+++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++... ...+ ..++++..+.......+ +++++.+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~ 97 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL--GRSYADGVLELNASDDRGIDVV-RNQIKHFA 97 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGHHHHEEEECTTSCCSHHHH-HTHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCCEEEecCccccChHHH-HHHHHHHH
Confidence 36899999999999999877665699999999999999999988752 1111 12445544443332222 11222111
Q ss_pred CCCCCCccccCCHHHHHHHHHHHh-cCCcEEEEEecccCcc--cccccC--CC-CCCCcEEEEeCCchHH-hhh-cCCCc
Q 003753 209 IDPDGDKWKNRDDQGRAAEIFRRL-SNKKFALLLDDLRERI--ELSEAG--VP-VQNASKIVFTTIFEEV-CSS-MSVDW 280 (798)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~--~~~~~~--~p-~~~gs~iivTTR~~~v-~~~-~~~~~ 280 (798)
... ..+ .+++.++|+||++... ....+. +. ...++.+|+||+...- ... .....
T Consensus 98 ~~~------------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 98 QKK------------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp HBC------------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred hcc------------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce
Confidence 000 001 3468999999998642 111110 11 3456788887765432 111 12234
Q ss_pred ceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchH-HHHHH
Q 003753 281 RFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLA-LVTIG 333 (798)
Q Consensus 281 ~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa-i~~~g 333 (798)
.+.+.+++.++..+++.+.+.......+ .+....|++.++|.|.. +..+.
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDVKYT---NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 7899999999999999987653322222 34578899999999954 44443
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.83 E-value=4.8e-09 Score=111.80 Aligned_cols=93 Identities=23% Similarity=0.220 Sum_probs=68.6
Q ss_pred CCCCCCCCCCCCCcceeeeecc-cccccccHHHHhcCCceeEEeCCCCccccccc-ccccCCCCCCEEEcCCCCCcccCc
Q 003753 504 SIDSLSPTPPCSPRLLTLLVRY-TMIKEFENKFFKSMYALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLSNTNICELPI 581 (798)
Q Consensus 504 ~~~~l~~~~~~~~~L~~L~l~~-~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~Ls~~~i~~lp~ 581 (798)
.+..+|. +..+++|+.|+|++ |.+..+++..|.++++|++|+|++| .++.+| ..+.+|++|++|+|++|++..+|.
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 4667776 77777788888875 7777777766778888888888888 777664 456778888888888888877776
Q ss_pred cccCCCcccEEeCCCCC
Q 003753 582 GIKSCTHLRTLLLDGTE 598 (798)
Q Consensus 582 ~i~~l~~L~~L~l~~~~ 598 (798)
.+.....|++|+|.+|.
T Consensus 98 ~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNP 114 (347)
T ss_dssp TTTCSCCCCEEECCSSC
T ss_pred HHcccCCceEEEeeCCC
Confidence 54444448888887776
No 158
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.78 E-value=7.9e-08 Score=101.19 Aligned_cols=171 Identities=12% Similarity=0.127 Sum_probs=104.2
Q ss_pred cccchhHHHHHHHHHhhc-----CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHH
Q 003753 131 NIVGIESRLSEVWRYIED-----DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRS 205 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 205 (798)
+++|++..++++.+++.. .....+.|+|++|+|||++|+.+++.. .. ..+++..+......++...+.
T Consensus 13 ~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~---~~~~~~~~~~~~~~~l~~~l~- 85 (324)
T 1hqc_A 13 EYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GV---NLRVTSGPAIEKPGDLAAILA- 85 (324)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TC---CEEEECTTTCCSHHHHHHHHT-
T ss_pred HhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEeccccCChHHHHHHHH-
Confidence 699999999998888742 344678999999999999999998876 22 234554433322222222111
Q ss_pred HcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc-----c----cccC--CC------------CCCCcE
Q 003753 206 RLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE-----L----SEAG--VP------------VQNASK 262 (798)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-----~----~~~~--~p------------~~~gs~ 262 (798)
.. ..+..+|++|+++.... + .... .. ...+.+
T Consensus 86 ------------------------~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 86 ------------------------NS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ------------------------TT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ------------------------Hh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 00 12455777777765420 0 0000 00 012456
Q ss_pred EEEeCCchH-Hhhhc--CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHHHh
Q 003753 263 IVFTTIFEE-VCSSM--SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGSAM 336 (798)
Q Consensus 263 iivTTR~~~-v~~~~--~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l 336 (798)
+|.||.... +...+ .....+.+.+++.++..+++.+.+.......+ .+....+++.++|.|-.+..+...+
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 666665432 21111 11246899999999999999888754332222 3567889999999998877766554
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.75 E-value=1.2e-08 Score=108.80 Aligned_cols=102 Identities=14% Similarity=0.108 Sum_probs=88.0
Q ss_pred eeeeeccc-ccccccHHHHhcCCceeEEeCCC-Cccccccc-ccccCCCCCCEEEcCCCCCcccCc-cccCCCcccEEeC
Q 003753 519 LTLLVRYT-MIKEFENKFFKSMYALRVLDSSQ-NAKLSKLH-VGEGELIDLQYLNLSNTNICELPI-GIKSCTHLRTLLL 594 (798)
Q Consensus 519 ~~L~l~~~-~~~~l~~~~~~~l~~Lr~L~L~~-~~~i~~lp-~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~l 594 (798)
..++++++ .+..+|. +..+++|++|+|++ | .++.+| ..++.|.+|++|+|++|.|..+|. .|.+|++|++|+|
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 35678887 8999998 88999999999996 8 899886 578999999999999999998854 6799999999999
Q ss_pred CCCCCcccccchhhcCCCCCccccccCCCCC
Q 003753 595 DGTENLKAIPVGMLSSLLSLRVFSWVPTRYA 625 (798)
Q Consensus 595 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 625 (798)
++|. +..+|.+.+..++ |+.|++.+|.+.
T Consensus 88 ~~N~-l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 88 SFNA-LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSSC-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCCc-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 9997 8899988666665 999999998775
No 160
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.75 E-value=2e-07 Score=95.97 Aligned_cols=201 Identities=11% Similarity=0.069 Sum_probs=123.9
Q ss_pred cccchhHHHHHHHHHhh----cCCceEEEEEecCCchHHHHHHHHHHHhhhhcCC--C-C-eEEEEEcCCccCHHHHHHH
Q 003753 131 NIVGIESRLSEVWRYIE----DDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHK--F-G-AVIMVKASTELNIEKIQDV 202 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--f-~-~~~wv~vs~~~~~~~~~~~ 202 (798)
.+.||++++++|...|. .+....+.|+|++|+|||++|+.|++........ . + ..+++++..-.+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 37899999999998884 3667889999999999999999999987421111 1 1 3567777777888999999
Q ss_pred HHHHcCCCCCCCccccCCHHHHHHHHHHHh---cCCcEEEEEecccCccc--cc-cc-CCCCCCCc--EEEEeCCchH--
Q 003753 203 IRSRLGIDPDGDKWKNRDDQGRAAEIFRRL---SNKKFALLLDDLRERIE--LS-EA-GVPVQNAS--KIVFTTIFEE-- 271 (798)
Q Consensus 203 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l---~~~r~LlVlDdv~~~~~--~~-~~-~~p~~~gs--~iivTTR~~~-- 271 (798)
|++++..... ......+....+...+ .+++++++||+++...+ .. .+ ..+...++ .||.++...+
T Consensus 101 I~~~L~g~~~----~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 101 IWFAISKENL----CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHSCCC------CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHhcCCCC----CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 9999954321 1112223333333333 45789999999987531 11 01 11112233 3333343321
Q ss_pred ---H----hhhcCCCcceeccCCChHHHHHHHHHhccCccc------------------------------------CCC
Q 003753 272 ---V----CSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVL------------------------------------NSH 308 (798)
Q Consensus 272 ---v----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~------------------------------------~~~ 308 (798)
+ ...++ ...+.+++++.+|-.+++.+++..... -.+
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 255 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINN 255 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCH
Confidence 1 12221 246899999999999999888643210 122
Q ss_pred hhHHHHHHHHHHHhCCCchHHHHHHHHh
Q 003753 309 PEIRELAETVANMCGGLPLALVTIGSAM 336 (798)
Q Consensus 309 ~~~~~~~~~i~~~c~glPLai~~~g~~l 336 (798)
..++-+|++++...|..-.|+.++-...
T Consensus 256 ~ai~~~A~~vA~~~GD~R~Al~ilr~A~ 283 (318)
T 3te6_A 256 KITQLIAKNVANVSGSTEKAFKICEAAV 283 (318)
T ss_dssp HHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 3345556666667777777777664433
No 161
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=7.2e-08 Score=101.64 Aligned_cols=182 Identities=16% Similarity=0.176 Sum_probs=111.1
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCC-CeEEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKF-GAVIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
+++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++.... ..+ ...+.+..+.......+...+......
T Consensus 26 ~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (327)
T 1iqp_A 26 DIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFG--ENWRHNFLELNASDERGINVIREKVKEFART 103 (327)
T ss_dssp TCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHG--GGHHHHEEEEETTCHHHHHTTHHHHHHHHHS
T ss_pred HhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcC--CcccCceEEeeccccCchHHHHHHHHHHHhh
Confidence 69999999999999998877666999999999999999999987521 111 123344433321111111111000000
Q ss_pred CCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc--cccccC--CC-CCCCcEEEEeCCchHH-hhh-cCCCcce
Q 003753 210 DPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI--ELSEAG--VP-VQNASKIVFTTIFEEV-CSS-MSVDWRF 282 (798)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~--~~~~~~--~p-~~~gs~iivTTR~~~v-~~~-~~~~~~~ 282 (798)
. ....+++.++|+||++... ....+. +. ...++++|+||....- ... ......+
T Consensus 104 ~-------------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~ 164 (327)
T 1iqp_A 104 K-------------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 164 (327)
T ss_dssp C-------------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEE
T ss_pred C-------------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEE
Confidence 0 0012568899999998652 111110 11 3456788888865432 111 0112368
Q ss_pred eccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHHHHh
Q 003753 283 KVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIGSAM 336 (798)
Q Consensus 283 ~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~l 336 (798)
.+.+++.++..+++.+.+.......+ .+..+.|++.++|.|-.+..+...+
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 165 RFRPLRDEDIAKRLRYIAENEGLELT---EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCEEC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 99999999999999887654332222 3467789999999998765554444
No 162
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.67 E-value=8.7e-09 Score=110.27 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=9.2
Q ss_pred ccCceEEeeccCCCC
Q 003753 690 QDLQDLSIINCSIKD 704 (798)
Q Consensus 690 ~~L~~L~L~~~~l~~ 704 (798)
++|++|+|++|.++.
T Consensus 239 ~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 239 PSLELLHLYFNELSS 253 (372)
T ss_dssp SSCCEEECTTSSCCH
T ss_pred CCCCEEeccCCCCCH
Confidence 556666666665543
No 163
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.60 E-value=8.7e-08 Score=92.20 Aligned_cols=148 Identities=14% Similarity=0.180 Sum_probs=85.3
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcC----CCCeEEEEEcCCccCHHHHHHHHHHH
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSH----KFGAVIMVKASTELNIEKIQDVIRSR 206 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~ 206 (798)
.++||++.++++.+++.....+.+.|+|++|+|||++|+.+++....... ....++++.++. +.
T Consensus 23 ~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~------ 90 (195)
T 1jbk_A 23 PVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV------ 90 (195)
T ss_dssp CCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------HH------
T ss_pred ccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------Hh------
Confidence 69999999999999998766678899999999999999999888632100 122344554321 10
Q ss_pred cCCCCCCCccccCCHHHHHHHHHHHh--cCCcEEEEEecccCcc---------cccccCCC--CCCCcEEEEeCCchHHh
Q 003753 207 LGIDPDGDKWKNRDDQGRAAEIFRRL--SNKKFALLLDDLRERI---------ELSEAGVP--VQNASKIVFTTIFEEVC 273 (798)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~~l--~~~r~LlVlDdv~~~~---------~~~~~~~p--~~~gs~iivTTR~~~v~ 273 (798)
.... ...........+.+.+ .+++.+|||||++... ++...... ...+..+|+||......
T Consensus 91 -~~~~-----~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~ 164 (195)
T 1jbk_A 91 -AGAK-----YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR 164 (195)
T ss_dssp -TTTC-----SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHH
T ss_pred -ccCC-----ccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHHHH
Confidence 0000 0011111222222222 3568899999997642 11111111 23456677777665432
Q ss_pred hhc-------CCCcceeccCCChHHHHHHH
Q 003753 274 SSM-------SVDWRFKVDYLPQEEAWNLF 296 (798)
Q Consensus 274 ~~~-------~~~~~~~l~~L~~~~a~~Lf 296 (798)
... .....+.+++++.++..+++
T Consensus 165 ~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 165 QYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 111 11225778888877766543
No 164
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.48 E-value=1.6e-06 Score=93.17 Aligned_cols=187 Identities=15% Similarity=0.159 Sum_probs=106.6
Q ss_pred cccchhHHHHHHHHHhhcCC-ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcC-
Q 003753 131 NIVGIESRLSEVWRYIEDDG-VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLG- 208 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~- 208 (798)
+++|++..++.+.+.+..+. ...+.|+|+.|+||||+|+.+++.... ...+. ...+........+...-.
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~-~~~~~-------~~~~~~~~~~~~~~~~~~~ 88 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC-ETGIT-------ATPCGVCDNCREIEQGRFV 88 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSC-TTCSC-------SSCCSSSHHHHHHHTSCCS
T ss_pred hccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCC-CCCCC-------CCCCcccHHHHHHhccCCC
Confidence 69999999999999997654 357899999999999999999887621 11110 000000001111111000
Q ss_pred ----CCCCCCccccCCHHHHHHHHHHHh-----cCCcEEEEEecccCcc--ccccc---CCCCCCCcEEEEeCCchH-Hh
Q 003753 209 ----IDPDGDKWKNRDDQGRAAEIFRRL-----SNKKFALLLDDLRERI--ELSEA---GVPVQNASKIVFTTIFEE-VC 273 (798)
Q Consensus 209 ----~~~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~~~--~~~~~---~~p~~~gs~iivTTR~~~-v~ 273 (798)
.... ......+.. .+.+.+ .+++.++|+||++... ....+ .-....+..+|++|.... +.
T Consensus 89 ~~~~~~~~-~~~~~~~~~----~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 89 DLIEIDAA-SRTKVEDTR----DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp SCEEEETT-CSCCSSCHH----HHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ceEEeccc-ccCCHHHHH----HHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 0000 000111122 222222 3467899999997642 11111 100234566676665432 21
Q ss_pred h-hcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHH
Q 003753 274 S-SMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIG 333 (798)
Q Consensus 274 ~-~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 333 (798)
. .......+.+.+++.++..+++.+.+.......+ .+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 1 1122357899999999999999877643322222 3457789999999998776654
No 165
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.47 E-value=1e-06 Score=92.40 Aligned_cols=176 Identities=15% Similarity=0.179 Sum_probs=108.6
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCC-eEEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFG-AVIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
+++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++... ...+. ..+.++.+.....
T Consensus 18 ~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~------------- 82 (319)
T 2chq_A 18 EVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGI------------- 82 (319)
T ss_dssp GSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTSTTCT-------------
T ss_pred HHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccccCh-------------
Confidence 6899999999999999776665699999999999999999988752 12211 1233444332110
Q ss_pred CCCCCccccCCHHHHHHHHHHH--h-cCCcEEEEEecccCcc-----cccccCCCCCCCcEEEEeCCchH-Hhhh-cCCC
Q 003753 210 DPDGDKWKNRDDQGRAAEIFRR--L-SNKKFALLLDDLRERI-----ELSEAGVPVQNASKIVFTTIFEE-VCSS-MSVD 279 (798)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~~--l-~~~r~LlVlDdv~~~~-----~~~~~~~p~~~gs~iivTTR~~~-v~~~-~~~~ 279 (798)
............. + .+++.++|+|+++... .+.+..-....+.++|+||.... +... ....
T Consensus 83 ---------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 83 ---------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp ---------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred ---------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC
Confidence 0111111111111 1 2568899999997642 12222111345677777776543 2111 1123
Q ss_pred cceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHH
Q 003753 280 WRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIG 333 (798)
Q Consensus 280 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 333 (798)
..+.+.+++.++..+++.+.+.......+ .+....+++.++|.+-.+....
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCCCBC---HHHHHHHHHTTTTCHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 47899999999999999887754332222 3457788889999987655443
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.43 E-value=4.2e-08 Score=104.95 Aligned_cols=59 Identities=22% Similarity=0.149 Sum_probs=25.8
Q ss_pred CCCCEEEcCCCCCcc-----cCccccCCCcccEEeCCCCCCcccc-----cchhhcCCCCCccccccCCCC
Q 003753 564 IDLQYLNLSNTNICE-----LPIGIKSCTHLRTLLLDGTENLKAI-----PVGMLSSLLSLRVFSWVPTRY 624 (798)
Q Consensus 564 ~~L~~L~Ls~~~i~~-----lp~~i~~l~~L~~L~l~~~~~l~~l-----p~~~i~~L~~L~~L~l~~~~~ 624 (798)
.+|++|+|++|.+.. ++..+..+++|++|+|++|. +... +.. +...++|++|++++|.+
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNVAYNGA 223 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEECCSSCC
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEECCCCCC
Confidence 445555555554432 23333444455555555544 3321 111 33444555555555444
No 167
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.40 E-value=4.8e-07 Score=90.51 Aligned_cols=168 Identities=12% Similarity=0.134 Sum_probs=100.9
Q ss_pred cccch---hHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHc
Q 003753 131 NIVGI---ESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRL 207 (798)
Q Consensus 131 ~~vGr---~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 207 (798)
+++|. +..++.+..+...+..+.+.|+|++|+||||+|+.+++.... . ...+.|+.++.-.+. +.
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~--~-~~~~~~~~~~~~~~~------~~--- 96 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE--L-ERRSFYIPLGIHASI------ST--- 96 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH--T-TCCEEEEEGGGGGGS------CG---
T ss_pred hccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH--c-CCeEEEEEHHHHHHH------HH---
Confidence 57763 356666666665556688999999999999999999988732 2 334567765442110 00
Q ss_pred CCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc---ccccCCC-----CCCC-cEEEEeCCchH-------
Q 003753 208 GIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE---LSEAGVP-----VQNA-SKIVFTTIFEE------- 271 (798)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~---~~~~~~p-----~~~g-s~iivTTR~~~------- 271 (798)
. ..+.+ .++.+||+||++.... +...... ...+ .++|+||+...
T Consensus 97 ---------~----------~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~ 156 (242)
T 3bos_A 97 ---------A----------LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVL 156 (242)
T ss_dssp ---------G----------GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCC
T ss_pred ---------H----------HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhh
Confidence 0 00011 3456899999876421 1111111 1222 24777776321
Q ss_pred --HhhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHH
Q 003753 272 --VCSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIG 333 (798)
Q Consensus 272 --v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 333 (798)
+...+.....+.+++++.++..+++.+.+.......+ .+....+++.++|.+-.+..+.
T Consensus 157 ~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 157 PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHHHH
Confidence 2222222257899999999999999887753332222 3467788899999887665543
No 168
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.39 E-value=2.9e-06 Score=92.68 Aligned_cols=178 Identities=18% Similarity=0.162 Sum_probs=105.3
Q ss_pred ccc-chhH--HHHHHHHHhhcCC-ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHH
Q 003753 131 NIV-GIES--RLSEVWRYIEDDG-VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSR 206 (798)
Q Consensus 131 ~~v-Gr~~--~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 206 (798)
.|+ |... ....+.......+ ...+.|+|++|+||||||+.+++.... ...-..+++++.. .+..++...
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~-~~~~~~v~~v~~~------~~~~~~~~~ 178 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITSE------KFLNDLVDS 178 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHH-HCCSSCEEEEEHH------HHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeHH------HHHHHHHHH
Confidence 455 6433 3334444444333 678999999999999999999987732 1111234555433 233444443
Q ss_pred cCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc---ccccCCC-----CCCCcEEEEeCCch--------
Q 003753 207 LGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE---LSEAGVP-----VQNASKIVFTTIFE-------- 270 (798)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~---~~~~~~p-----~~~gs~iivTTR~~-------- 270 (798)
+... . ...+.+.+..+.-+|++||++.... .....+. ...|..||+||.+.
T Consensus 179 ~~~~---------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~ 245 (440)
T 2z4s_A 179 MKEG---------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_dssp HHTT---------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCC
T ss_pred HHcc---------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH
Confidence 3211 1 1223344444677999999975431 1111111 34577888888752
Q ss_pred -HHhhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHH
Q 003753 271 -EVCSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVT 331 (798)
Q Consensus 271 -~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 331 (798)
.+...+.....+.+++++.++-.+++.+.+.......++ +....|++.++|.+-.+..
T Consensus 246 ~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 246 DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHH
T ss_pred HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHH
Confidence 233334344578999999999999998887543322232 3467788888888865443
No 169
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.36 E-value=1.5e-06 Score=93.95 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=22.3
Q ss_pred cccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccC
Q 003753 582 GIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVP 621 (798)
Q Consensus 582 ~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~ 621 (798)
.+.++.+|+.+.+..+ +..++.+.+..+++|+.+.+..
T Consensus 157 aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred hhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence 3455666666666543 4556555566666666666543
No 170
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=2.4e-06 Score=95.49 Aligned_cols=186 Identities=10% Similarity=0.102 Sum_probs=107.5
Q ss_pred CcccchhHHHHHHHHHhhc-----------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCC
Q 003753 130 NNIVGIESRLSEVWRYIED-----------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAST 192 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 192 (798)
.+++|++..++++.+++.. +..+.+.|+|++|+||||+|+.+++.. . ..++.++.+.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~---~~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---G---YDILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---T---CEEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---C---CCEEEEeCCC
Confidence 3699999999999999954 134789999999999999999998876 1 2345566665
Q ss_pred ccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHH--HhcCCcEEEEEecccCcccc-----cccC-CCCCCCcEEE
Q 003753 193 ELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFR--RLSNKKFALLLDDLRERIEL-----SEAG-VPVQNASKIV 264 (798)
Q Consensus 193 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~--~l~~~r~LlVlDdv~~~~~~-----~~~~-~p~~~gs~ii 264 (798)
......+. ..+....... ..........+ ...+++.+|++|+++....- ..+. +-...+..||
T Consensus 113 ~~~~~~~~-~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iI 183 (516)
T 1sxj_A 113 VRSKTLLN-AGVKNALDNM--------SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLI 183 (516)
T ss_dssp CCCHHHHH-HTGGGGTTBC--------CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEE
T ss_pred cchHHHHH-HHHHHHhccc--------cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEE
Confidence 54443222 2222111100 00000000000 12357889999999764211 1110 0012234455
Q ss_pred EeCCchH---HhhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCC-chHHHHHH
Q 003753 265 FTTIFEE---VCSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGL-PLALVTIG 333 (798)
Q Consensus 265 vTTR~~~---v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~g 333 (798)
+++.+.. +.........+.+++++.++..+.+.+.+.......++ +....|++.++|. +-|+..+.
T Consensus 184 li~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 184 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred EEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 5544322 22222234568999999999999998876543322222 2467888999984 45555543
No 171
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.32 E-value=2.7e-06 Score=87.50 Aligned_cols=166 Identities=19% Similarity=0.203 Sum_probs=99.2
Q ss_pred cccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHH
Q 003753 131 NIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIE 197 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 197 (798)
+++|.+..+++|.+.+.. ...+-+.|+|++|+|||+||+.+++.. .. ..+.+..+.-..
T Consensus 18 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~---~~~~v~~~~~~~-- 89 (285)
T 3h4m_A 18 DIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NA---TFIRVVGSELVK-- 89 (285)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TC---EEEEEEGGGGCC--
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CC---CEEEEehHHHHH--
Confidence 689999999999888733 345679999999999999999998876 22 223333322110
Q ss_pred HHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc----------------ccccc-----CCC
Q 003753 198 KIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI----------------ELSEA-----GVP 256 (798)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~----------------~~~~~-----~~p 256 (798)
.. ...........+......++.+|+|||++... .+..+ ...
T Consensus 90 ------------~~-----~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 90 ------------KF-----IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp ------------CS-----TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred ------------hc-----cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 00 11111222222333334567899999996531 01111 111
Q ss_pred CCCCcEEEEeCCchHHh-----hhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCC
Q 003753 257 VQNASKIVFTTIFEEVC-----SSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGL 325 (798)
Q Consensus 257 ~~~gs~iivTTR~~~v~-----~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 325 (798)
...+..||.||...... ........+.++..+.++..++++..+.......... ...+++.+.|.
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~ 222 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGC 222 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTC
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCC
Confidence 33466788888754331 1111234688999999999999998876543322222 45666777664
No 172
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.21 E-value=7.1e-07 Score=94.54 Aligned_cols=81 Identities=15% Similarity=0.034 Sum_probs=42.6
Q ss_pred HhcCCceeEEeCCCCcccc----------cccccccCCCCCCEEEcCCCCCcccCccccCCCcccEEeCCCCCCcccccc
Q 003753 536 FKSMYALRVLDSSQNAKLS----------KLHVGEGELIDLQYLNLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPV 605 (798)
Q Consensus 536 ~~~l~~Lr~L~L~~~~~i~----------~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 605 (798)
...+++|+.|.+.+. ... .++..+..+++|+.|+|++|.-..+|. + .+++|++|++..|. +..-..
T Consensus 135 ~~~l~~L~~L~l~~~-~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~-l~~~~l 210 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDI-DFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGG-LPDSVV 210 (362)
T ss_dssp HHHHTTCSEEEECCC-CTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSB-CCHHHH
T ss_pred hhhcchhhheeecCc-chhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCC-CChHHH
Confidence 456778888887654 221 233334556677777776663223443 3 25667777666554 221111
Q ss_pred hhhc--CCCCCcccccc
Q 003753 606 GMLS--SLLSLRVFSWV 620 (798)
Q Consensus 606 ~~i~--~L~~L~~L~l~ 620 (798)
..+. .+++|++|+++
T Consensus 211 ~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHSBCTTCCEEEEE
T ss_pred HHHHHccCCCCcEEEEe
Confidence 1122 56666666664
No 173
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.20 E-value=7.3e-06 Score=87.16 Aligned_cols=191 Identities=13% Similarity=0.193 Sum_probs=108.8
Q ss_pred CcccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhh-cCCCCeEEEEEcCCccCHHHHHHHHHHHcC
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDM-SHKFGAVIMVKASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 208 (798)
.+++|++..++.+..++..+..+.+.|+|++|+||||+|+.+++..... ...+ .+..+..+.......+...+.....
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIVREKVKNFAR 115 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHHTTHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHHHHHHHHHhh
Confidence 3689999999999999987655558999999999999999998875210 0111 2334444443333333222211111
Q ss_pred CCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc-----ccccCCCCCCCcEEEEeCCchH-Hhhhc-CCCcc
Q 003753 209 IDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE-----LSEAGVPVQNASKIVFTTIFEE-VCSSM-SVDWR 281 (798)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-----~~~~~~p~~~gs~iivTTR~~~-v~~~~-~~~~~ 281 (798)
.... ..... .....-.+++-++++|+++.... +.+..-......++|++|.... +.... .....
T Consensus 116 ~~~~----~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~ 186 (353)
T 1sxj_D 116 LTVS----KPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSK 186 (353)
T ss_dssp SCCC----CCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEE
T ss_pred hccc----ccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCce
Confidence 1110 00000 00011123567999999876421 1111000234566777664332 21110 11236
Q ss_pred eeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHH
Q 003753 282 FKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIG 333 (798)
Q Consensus 282 ~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 333 (798)
+.+.+++.++....+.+.+.......+ .+..+.|++.++|.|-.+..+.
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 889999999999999887654332222 3467889999999987654443
No 174
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.19 E-value=1.2e-06 Score=92.67 Aligned_cols=78 Identities=14% Similarity=0.117 Sum_probs=41.7
Q ss_pred CCCcceeeeecccccc----------cccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEEcCCCCCccc-Ccc
Q 003753 514 CSPRLLTLLVRYTMIK----------EFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLNLSNTNICEL-PIG 582 (798)
Q Consensus 514 ~~~~L~~L~l~~~~~~----------~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~l-p~~ 582 (798)
.+++|+.|.+..+... .+. .++..+++|+.|+|++|..+ .+|. +. +++|++|+|..|.+..- ...
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHH
Confidence 4567777766443211 122 33566677777777766222 3433 32 66777777776654321 112
Q ss_pred c--cCCCcccEEeCC
Q 003753 583 I--KSCTHLRTLLLD 595 (798)
Q Consensus 583 i--~~l~~L~~L~l~ 595 (798)
+ ..+++|++|+|+
T Consensus 213 l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHSBCTTCCEEEEE
T ss_pred HHHccCCCCcEEEEe
Confidence 2 256677777764
No 175
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.18 E-value=5.3e-05 Score=82.45 Aligned_cols=172 Identities=17% Similarity=0.187 Sum_probs=102.5
Q ss_pred CcccchhHHH---HHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHH
Q 003753 130 NNIVGIESRL---SEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSR 206 (798)
Q Consensus 130 ~~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 206 (798)
.+++|.+..+ ..+...+..+....+.|+|++|+||||+|+.+++.. ...| ..+.... ....++. .+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f---~~l~a~~-~~~~~ir-~~--- 94 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADV---ERISAVT-SGVKEIR-EA--- 94 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEE---EEEETTT-CCHHHHH-HH---
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCe---EEEEecc-CCHHHHH-HH---
Confidence 3699999888 788888888888889999999999999999998876 2222 2222211 1122211 11
Q ss_pred cCCCCCCCccccCCHHHHHHHHH-HHhcCCcEEEEEecccCccc-ccccCCC--CCCCcEEEE-eCCchHH---hhhcCC
Q 003753 207 LGIDPDGDKWKNRDDQGRAAEIF-RRLSNKKFALLLDDLRERIE-LSEAGVP--VQNASKIVF-TTIFEEV---CSSMSV 278 (798)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~l~-~~l~~~r~LlVlDdv~~~~~-~~~~~~p--~~~gs~iiv-TTR~~~v---~~~~~~ 278 (798)
..... ....+++.+|++|+++.... .....++ ......+|. ||.+... .....-
T Consensus 95 ------------------~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR 156 (447)
T 3pvs_A 95 ------------------IERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSR 156 (447)
T ss_dssp ------------------HHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTT
T ss_pred ------------------HHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCc
Confidence 11111 11246789999999986531 1112223 222233333 5555431 111122
Q ss_pred CcceeccCCChHHHHHHHHHhccCc-------ccCCChhHHHHHHHHHHHhCCCchHHHHHH
Q 003753 279 DWRFKVDYLPQEEAWNLFRLKVTDE-------VLNSHPEIRELAETVANMCGGLPLALVTIG 333 (798)
Q Consensus 279 ~~~~~l~~L~~~~a~~Lf~~~~~~~-------~~~~~~~~~~~~~~i~~~c~glPLai~~~g 333 (798)
...+.+++++.++...++.+.+... ....+ .+..+.|++.++|.+-.+..+.
T Consensus 157 ~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~---~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 157 ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLP---DETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECC---HHHHHHHHHHHCSCHHHHHHHH
T ss_pred eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 3478899999999999998876541 11111 3466778888888876554443
No 176
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.16 E-value=1.8e-06 Score=82.28 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=41.1
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++||+.+++++.+.+.....+.+.|+|++|+||||+|+.+++..
T Consensus 23 ~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 23 PVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999987667778999999999999999998876
No 177
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.15 E-value=5.2e-05 Score=77.18 Aligned_cols=192 Identities=15% Similarity=0.084 Sum_probs=103.7
Q ss_pred cccchhHHHHHHHHH-------hh---cCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHH
Q 003753 131 NIVGIESRLSEVWRY-------IE---DDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQ 200 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~-------L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 200 (798)
.++|....++++... +. ....+.+.|+|++|+|||++|+.+++.. ...| +.+..+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~---~~i~~~~~------- 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPF---IKICSPDK------- 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSE---EEEECGGG-------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEeCHHH-------
Confidence 577887776666652 32 3456789999999999999999998875 2221 22222211
Q ss_pred HHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCc-----------cc----ccccCC---CCCCCcE
Q 003753 201 DVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRER-----------IE----LSEAGV---PVQNASK 262 (798)
Q Consensus 201 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-----------~~----~~~~~~---p~~~gs~ 262 (798)
+.... ...........+......+..+|+|||++.. .. +....- +......
T Consensus 101 ------~~g~~-----~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 169 (272)
T 1d2n_A 101 ------MIGFS-----ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 169 (272)
T ss_dssp ------CTTCC-----HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred ------hcCCc-----hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence 00000 0000112222233334467889999998653 01 111110 1223345
Q ss_pred EEEeCCchHHhhh---cC-CCcceeccCCCh-HHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCC------chHHHH
Q 003753 263 IVFTTIFEEVCSS---MS-VDWRFKVDYLPQ-EEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGL------PLALVT 331 (798)
Q Consensus 263 iivTTR~~~v~~~---~~-~~~~~~l~~L~~-~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl------PLai~~ 331 (798)
||.||...+.... .+ -...+.++++++ ++...++.+... .. .+....|++.+.|. +-++..
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~-----~~---~~~~~~l~~~~~g~~~~g~ir~l~~~ 241 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN-----FK---DKERTTIAQQVKGKKVWIGIKKLLML 241 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC-----SC---HHHHHHHHHHHTTSEEEECHHHHHHH
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC-----CC---HHHHHHHHHHhcCCCccccHHHHHHH
Confidence 6777776654332 11 135678899988 666666655321 11 34567788888884 333333
Q ss_pred HHHHhcCCCChhHHHHHHHHHhcC
Q 003753 332 IGSAMASRRDPDNWRYAIEELQRY 355 (798)
Q Consensus 332 ~g~~l~~~~~~~~w~~~~~~l~~~ 355 (798)
+-... .......++.+++.+...
T Consensus 242 l~~a~-~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 242 IEMSL-QMDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHHHT-TSCGGGHHHHHHHHHHHT
T ss_pred HHHHh-hhchHHHHHHHHHHHHHc
Confidence 33222 223455677776666554
No 178
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=1.3e-06 Score=81.03 Aligned_cols=87 Identities=13% Similarity=0.184 Sum_probs=66.5
Q ss_pred ccCceEEeeccCCCC--CCcccCCCCccEEEeecCCchhhhhccccccCCCCccccc----ccccceeecCCccchhhcc
Q 003753 690 QDLQDLSIINCSIKD--LTCIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSM----FLHLRQAYFFKLPNLKNIC 763 (798)
Q Consensus 690 ~~L~~L~L~~~~l~~--l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~----~~~L~~L~L~~~~~l~~i~ 763 (798)
.+|+.|++++|.+++ +..+..+++|++|+|++|..+++--- ..+.. .++|++|+|++|++++.-.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL---------~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL---------ERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH---------HHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH---------HHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 369999999997665 45678999999999999988776411 12222 4689999999999876422
Q ss_pred c-CCCCCCCcceeeeccCCCCCC
Q 003753 764 H-KAMAFPSLERIYVHGCPSLRK 785 (798)
Q Consensus 764 ~-~~~~~~~L~~L~l~~c~~L~~ 785 (798)
. ....+++|++|++++|++++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 1 234589999999999999875
No 179
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.14 E-value=1.2e-05 Score=83.63 Aligned_cols=147 Identities=10% Similarity=0.116 Sum_probs=85.0
Q ss_pred cccchhHHHHHHHHHhh---------------cCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCC--eEEEEEcCCc
Q 003753 131 NIVGIESRLSEVWRYIE---------------DDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFG--AVIMVKASTE 193 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~vs~~ 193 (798)
.++|.+..++.+.+++. ......+.|+|++|+|||++|+.+++.... ..... ..+.+..+.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~-~~~~~~~~~~~~~~~~- 109 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR-LGYVRKGHLVSVTRDD- 109 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH-TTSSSSCCEEEECGGG-
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh-cCCcCCCcEEEEcHHH-
Confidence 48899999888887663 233457999999999999999998887632 12211 233332211
Q ss_pred cCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc-----------cccccC--CC-CCC
Q 003753 194 LNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI-----------ELSEAG--VP-VQN 259 (798)
Q Consensus 194 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~-----------~~~~~~--~p-~~~ 259 (798)
+.... ...........+... +.-+|++|+++... ....+. +. ...
T Consensus 110 -------------l~~~~-----~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~ 168 (309)
T 3syl_A 110 -------------LVGQY-----IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRD 168 (309)
T ss_dssp -------------TCCSS-----TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTT
T ss_pred -------------hhhhc-----ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCC
Confidence 11000 111112222222222 34599999998431 111110 00 344
Q ss_pred CcEEEEeCCchHH----------hhhcCCCcceeccCCChHHHHHHHHHhccC
Q 003753 260 ASKIVFTTIFEEV----------CSSMSVDWRFKVDYLPQEEAWNLFRLKVTD 302 (798)
Q Consensus 260 gs~iivTTR~~~v----------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~ 302 (798)
+..||.||..... ...+ ...+.+++++.++-.+++...+..
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 169 DLVVILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp TCEEEEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CEEEEEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHHH
Confidence 6678888764332 2221 257899999999999999887654
No 180
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=1.6e-05 Score=84.44 Aligned_cols=191 Identities=11% Similarity=0.066 Sum_probs=101.5
Q ss_pred cccchhHHHHHHHHHh-hcCCceEEEEEecCCchHHHHHHHHHHHhhhh-cC--CCCe--------------------EE
Q 003753 131 NIVGIESRLSEVWRYI-EDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDM-SH--KFGA--------------------VI 186 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--~f~~--------------------~~ 186 (798)
+++|.+..++.+.+++ ..+....+.|+|+.|+||||+|+.+++..... .. .++. .+
T Consensus 15 ~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (354)
T 1sxj_E 15 ALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHL 94 (354)
T ss_dssp GCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEE
T ss_pred HhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceE
Confidence 6899999999999988 66555459999999999999999998853110 00 0110 11
Q ss_pred EEEcCCcc-CHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc-----ccccCCCCCCC
Q 003753 187 MVKASTEL-NIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE-----LSEAGVPVQNA 260 (798)
Q Consensus 187 wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-----~~~~~~p~~~g 260 (798)
.+..+... ......+++++.+..... ..... .+ ..+.+++-++|+|++..... +.+..-....+
T Consensus 95 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 95 EITPSDMGNNDRIVIQELLKEVAQMEQ--------VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp EECCC----CCHHHHHHHHHHHTTTTC----------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred EecHhhcCCcchHHHHHHHHHHHHhcc--------ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 11111100 000012222222211100 00000 00 00234677999999987421 11110002345
Q ss_pred cEEEEeCCch-HHhhh-cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHH
Q 003753 261 SKIVFTTIFE-EVCSS-MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIG 333 (798)
Q Consensus 261 s~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 333 (798)
..+|++|.+. .+... ......+++++++.++..+.+.+.+.......+. .+....|++.++|.+-.+..+.
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET--KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC--SHHHHHHHHHHTTCHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHcCCCHHHHHHHH
Confidence 6777776543 22111 1123678999999999999998877533221110 1356788899999886655544
No 181
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.08 E-value=1.5e-06 Score=74.97 Aligned_cols=65 Identities=3% Similarity=0.018 Sum_probs=54.0
Q ss_pred hHHH-HHhhHHHHHhhhhchhhcHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcccchhhhhHH
Q 003753 6 IIWD-IVKGCWNCTANASSYIRHLEANVDALSQAERELDSSCKDVSGR---IEQAIEADFVPREQRGEK 70 (798)
Q Consensus 6 ~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~---~~~~~~~~~~~~l~~~~~ 70 (798)
++++ +++||.+++.+|+.++.++++++++|+++|+.|++||.|++++ ..+...+.|++++.+..+
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaY 69 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSY 69 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH
Confidence 3567 9999999999999999999999999999999999999999875 234556678877444333
No 182
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.08 E-value=4.4e-05 Score=77.16 Aligned_cols=175 Identities=13% Similarity=0.162 Sum_probs=98.4
Q ss_pred cccchhHHHHHHHHHhh---c---------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHH
Q 003753 131 NIVGIESRLSEVWRYIE---D---------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEK 198 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 198 (798)
+++|.+..++++.+++. . ...+-+.|+|++|+|||++|+.+++.. ... .+.+..+.-.+
T Consensus 7 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~--- 77 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVE--- 77 (262)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSS---
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHh---
Confidence 68999988888766552 1 233568899999999999999999876 222 34444433211
Q ss_pred HHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc-------------c----ccccC-----CC
Q 003753 199 IQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI-------------E----LSEAG-----VP 256 (798)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~-------------~----~~~~~-----~p 256 (798)
. +...........+.......+.+|++|+++... . +..+. ..
T Consensus 78 -----------~-----~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 78 -----------V-----IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp -----------S-----STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred -----------h-----ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 0 011111222223333334567999999998641 0 01110 00
Q ss_pred CCCCcEEEEeCCchHHh-hhc----CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCch-HHH
Q 003753 257 VQNASKIVFTTIFEEVC-SSM----SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPL-ALV 330 (798)
Q Consensus 257 ~~~gs~iivTTR~~~v~-~~~----~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~ 330 (798)
...+..||.||...... ... .....+.++..+.++-.+++...+........ .......+++.+.|.+- .|.
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~l~ 219 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQS--STFYSQRLAELTPGFSGADIA 219 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBT--HHHHHHHHHHTCTTCCHHHHH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcc--hhhHHHHHHHHCCCCCHHHHH
Confidence 22355666677554321 111 12356788899999999999887654332222 12234678888888754 444
Q ss_pred HH
Q 003753 331 TI 332 (798)
Q Consensus 331 ~~ 332 (798)
.+
T Consensus 220 ~l 221 (262)
T 2qz4_A 220 NI 221 (262)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 183
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.06 E-value=4.4e-05 Score=82.37 Aligned_cols=264 Identities=12% Similarity=0.125 Sum_probs=123.2
Q ss_pred eeeEEeecCCCCCCCCC-CCCCCCcceeeeeccc---ccccccHHHHhcCCceeEEeCCCCccccccc-ccccCCCCCCE
Q 003753 494 AVRVSLWRSPSIDSLSP-TPPCSPRLLTLLVRYT---MIKEFENKFFKSMYALRVLDSSQNAKLSKLH-VGEGELIDLQY 568 (798)
Q Consensus 494 l~~lsl~~~~~~~~l~~-~~~~~~~L~~L~l~~~---~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~ 568 (798)
++.+.+-. .++.+.. .+.+|.+|+.+.+..+ .++.+....|.++.+|+.+.+..+ ++.++ ..+..+.+|+.
T Consensus 66 L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 66 LTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCE
T ss_pred CEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhccccc
Confidence 45555543 2444432 2356667777766654 355666666666666666665543 44443 34556666666
Q ss_pred EEcCCCCCccc-CccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccCCCCCCCcccccHHHhccC
Q 003753 569 LNLSNTNICEL-PIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNYGSSVPGVTVLLLEELESL 647 (798)
Q Consensus 569 L~Ls~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l 647 (798)
+.+..+ +..+ ...+..+.+|+.+.+..+ +..+....+.. .+|+.+.+..+-.. .....+..+
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~~~~-------------i~~~af~~c 204 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAKVTR-------------IGTNAFSEC 204 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTTCCE-------------ECTTTTTTC
T ss_pred ccccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCcccc-------------cccchhhhc
Confidence 666543 3333 234556666666666543 45555543432 44555554332110 011112222
Q ss_pred CCCCeeEEEEeccc---------------------------------chhhhh-hhhhhcccceeeee-----ccCc---
Q 003753 648 KHLQEISVIILTID---------------------------------SLNKLK-SSLKLQSCIRRLVM-----GLPE--- 685 (798)
Q Consensus 648 ~~L~~L~l~~~~~~---------------------------------~~~~l~-~~~~~~~~L~~L~l-----~lp~--- 685 (798)
.+|........... .+..+. .....+..|+.+.+ .+..
T Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF 284 (394)
T 4gt6_A 205 FALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIGTGAF 284 (394)
T ss_dssp TTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEECTTTT
T ss_pred cccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccceecCccc
Confidence 22222211100000 000000 00111223343333 1111
Q ss_pred hhhhccCceEEeeccCCCCCC--cccCCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcc
Q 003753 686 AIFSQDLQDLSIINCSIKDLT--CIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNIC 763 (798)
Q Consensus 686 ~~lp~~L~~L~L~~~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~ 763 (798)
... ++|+.+.+.. +++.++ .+..+.+|+.+.|.. .++.+.. ..+.++.+|+.+.|-+ .++.|.
T Consensus 285 ~~c-~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~---------~aF~~C~~L~~i~ip~--sv~~I~ 349 (394)
T 4gt6_A 285 MNC-PALQDIEFSS-RITELPESVFAGCISLKSIDIPE--GITQILD---------DAFAGCEQLERIAIPS--SVTKIP 349 (394)
T ss_dssp TTC-TTCCEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECT---------TTTTTCTTCCEEEECT--TCCBCC
T ss_pred ccc-cccccccCCC-cccccCceeecCCCCcCEEEeCC--cccEehH---------hHhhCCCCCCEEEECc--ccCEEh
Confidence 223 4566666643 233333 366777888887764 2444421 3566788888888853 355554
Q ss_pred c-CCCCCCCcceeeec----------cCCCCCCCCCCCCCC
Q 003753 764 H-KAMAFPSLERIYVH----------GCPSLRKLPLSLESG 793 (798)
Q Consensus 764 ~-~~~~~~~L~~L~l~----------~c~~L~~lp~~~~~~ 793 (798)
. .+..+++|+.+.+. .|.+|+.+....+..
T Consensus 350 ~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 350 ESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp GGGGTTCTTCCEEEESSCHHHHHTCBCCCCC----------
T ss_pred HhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCCCCE
Confidence 3 34457888888774 478888877665543
No 184
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.04 E-value=2.6e-05 Score=81.68 Aligned_cols=162 Identities=16% Similarity=0.116 Sum_probs=92.6
Q ss_pred HHHHHHHHhhcC--CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCc
Q 003753 138 RLSEVWRYIEDD--GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDK 215 (798)
Q Consensus 138 ~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 215 (798)
....+..++... ....+.|+|++|+||||||+.+++.... .. ..+++++.. ++...+...+..
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~--~~-~~~~~i~~~------~~~~~~~~~~~~------ 86 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKK--RG-YRVIYSSAD------DFAQAMVEHLKK------ 86 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHH--TT-CCEEEEEHH------HHHHHHHHHHHH------
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHH--CC-CEEEEEEHH------HHHHHHHHHHHc------
Confidence 344455555443 3467999999999999999999988732 22 234555432 333333333211
Q ss_pred cccCCHHHHHHHHHHHhcCCcEEEEEecccCccc---cc-ccCCC----CCCCcEEEEeCCch---------HHhhhcCC
Q 003753 216 WKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE---LS-EAGVP----VQNASKIVFTTIFE---------EVCSSMSV 278 (798)
Q Consensus 216 ~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~---~~-~~~~p----~~~gs~iivTTR~~---------~v~~~~~~ 278 (798)
.... .+.+.+. +.-+|++||+..... +. .+... ...|..||+||... .+...+..
T Consensus 87 ---~~~~----~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~ 158 (324)
T 1l8q_A 87 ---GTIN----EFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEG 158 (324)
T ss_dssp ---TCHH----HHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHT
T ss_pred ---CcHH----HHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccC
Confidence 0111 1222222 366999999976431 11 11111 23466788877532 22233333
Q ss_pred CcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCch
Q 003753 279 DWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPL 327 (798)
Q Consensus 279 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 327 (798)
...+.+++ +.++..+++.+.+.......+ .+....|++.+ |..-
T Consensus 159 ~~~i~l~~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 159 GILVEIEL-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVR 202 (324)
T ss_dssp SEEEECCC-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHH
T ss_pred ceEEEeCC-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHH
Confidence 35689999 999999999888754332223 34567788888 6654
No 185
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.04 E-value=3e-05 Score=82.89 Aligned_cols=45 Identities=16% Similarity=0.329 Sum_probs=36.4
Q ss_pred cccchhHHHHHH---HHHhhcCCc--eEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEV---WRYIEDDGV--KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l---~~~L~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++|++..++.+ .+.+..+.. +.+.|+|++|+|||++|+.+++..
T Consensus 45 ~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 699999887764 444444433 589999999999999999999887
No 186
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.02 E-value=0.00014 Score=77.10 Aligned_cols=173 Identities=13% Similarity=0.120 Sum_probs=101.3
Q ss_pred cccchhHHHHHHHHHhhc------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHH
Q 003753 131 NIVGIESRLSEVWRYIED------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEK 198 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 198 (798)
+++|.+..+++|.+.+.. ...+.+.|+|++|+|||++|+.+++.. .. ..+.+..+.-..
T Consensus 85 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~--- 155 (357)
T 3d8b_A 85 DIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTS--- 155 (357)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCC---
T ss_pred HhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhc---
Confidence 689999999999887742 345689999999999999999998875 21 234455432211
Q ss_pred HHHHHHHHcCCCCCCCccccCCHHHHHHHHH-HHhcCCcEEEEEecccCccc-------------cccc-----CCC--C
Q 003753 199 IQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF-RRLSNKKFALLLDDLRERIE-------------LSEA-----GVP--V 257 (798)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~l~~~r~LlVlDdv~~~~~-------------~~~~-----~~p--~ 257 (798)
.. .. ........+. ..-..++.+|+||+++.... ...+ +.. .
T Consensus 156 -----------~~-----~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 218 (357)
T 3d8b_A 156 -----------KW-----VG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSS 218 (357)
T ss_dssp -----------SS-----TT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----C
T ss_pred -----------cc-----cc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccC
Confidence 00 01 1112222222 22335678999999854310 0111 111 1
Q ss_pred CCCcEEEEeCCchHH-----hhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCC-chHHHH
Q 003753 258 QNASKIVFTTIFEEV-----CSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGL-PLALVT 331 (798)
Q Consensus 258 ~~gs~iivTTR~~~v-----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~ 331 (798)
..+..||.||..... .. .....+.+...+.++..+++...+........ .+....|++.+.|. +-.|..
T Consensus 219 ~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~l~~la~~t~G~s~~dl~~ 293 (357)
T 3d8b_A 219 EDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLS---EEEIEQIVQQSDAFSGADMTQ 293 (357)
T ss_dssp CCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC---HHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc---HHHHHHHHHHcCCCCHHHHHH
Confidence 234456656654321 22 22346788888999988888877644322212 34577888889884 445555
Q ss_pred HHH
Q 003753 332 IGS 334 (798)
Q Consensus 332 ~g~ 334 (798)
+..
T Consensus 294 l~~ 296 (357)
T 3d8b_A 294 LCR 296 (357)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 187
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.01 E-value=4.3e-05 Score=80.59 Aligned_cols=165 Identities=13% Similarity=0.143 Sum_probs=98.9
Q ss_pred cccchhHHHHHHHHHhhc-----CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHH
Q 003753 131 NIVGIESRLSEVWRYIED-----DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRS 205 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 205 (798)
+++|++..++++..++.. .....+.|+|++|+|||++|+.+++.. ... .+.+..+.......+.
T Consensus 30 ~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~---~~~~~~~~~~~~~~~~----- 98 (338)
T 3pfi_A 30 GYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SAN---IKTTAAPMIEKSGDLA----- 98 (338)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCC---EEEEEGGGCCSHHHHH-----
T ss_pred HhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCC---eEEecchhccchhHHH-----
Confidence 699999999999998853 345678999999999999999998775 222 2333332221111111
Q ss_pred HcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc-c--------ccccCC-------------C-CCCCcE
Q 003753 206 RLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI-E--------LSEAGV-------------P-VQNASK 262 (798)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~-~--------~~~~~~-------------p-~~~gs~ 262 (798)
..+.. ..+..+|+||+++... . ++.... + ..++..
T Consensus 99 --------------------~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 99 --------------------AILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp --------------------HHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred --------------------HHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 11111 2355677888877542 0 011000 0 111345
Q ss_pred EEEeCCchH-----HhhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHHH
Q 003753 263 IVFTTIFEE-----VCSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTIG 333 (798)
Q Consensus 263 iivTTR~~~-----v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 333 (798)
+|.+|.... +... ....+.+++++.++..+++.+.+.......+ .+....|++.+.|.|-.+..+.
T Consensus 157 ~i~atn~~~~l~~~L~~R--~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDR--FGMQFRLEFYKDSELALILQKAALKLNKTCE---EKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEEESCGGGSCHHHHTT--CSEEEECCCCCHHHHHHHHHHHHHHTTCEEC---HHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEEeCCCccccCHHHHhh--cCEEeeCCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHCcCHHHHHHHH
Confidence 666555432 2222 2357899999999999999887754321112 3467788889999985554443
No 188
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.97 E-value=0.00017 Score=74.42 Aligned_cols=172 Identities=14% Similarity=0.150 Sum_probs=100.9
Q ss_pred cccchhHHHHHHHHHhhc------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHH
Q 003753 131 NIVGIESRLSEVWRYIED------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEK 198 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 198 (798)
+++|.+..++.+.+.+.. ...+.+.|+|++|+||||+|+.+++.. .. ..+.+..+.-..
T Consensus 22 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~---~~~~i~~~~l~~--- 92 (297)
T 3b9p_A 22 DIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SA---TFLNISAASLTS--- 92 (297)
T ss_dssp GSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TC---EEEEEESTTTSS---
T ss_pred HhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CC---CeEEeeHHHHhh---
Confidence 689999999999888732 234688999999999999999998876 21 223344332110
Q ss_pred HHHHHHHHcCCCCCCCccccCCHHHHHHHHH-HHhcCCcEEEEEecccCccc----------------ccc-c-CCC---
Q 003753 199 IQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF-RRLSNKKFALLLDDLRERIE----------------LSE-A-GVP--- 256 (798)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~l~~~r~LlVlDdv~~~~~----------------~~~-~-~~p--- 256 (798)
. ...........+. .....++.+|++|+++.... +.. + ..+
T Consensus 93 -----------~------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 93 -----------K------YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp -----------S------SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred -----------c------ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence 0 0111222232222 23345778999999975411 000 0 111
Q ss_pred CCCCcEEEEeCCchH-----HhhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCch-HHH
Q 003753 257 VQNASKIVFTTIFEE-----VCSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPL-ALV 330 (798)
Q Consensus 257 ~~~gs~iivTTR~~~-----v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~ 330 (798)
.+.+..||.||.... +...+ ...+.++..+.++..+++...+........ .+....+++.+.|.+- ++.
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~~la~~~~g~~~~~l~ 230 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALRRF--TKRVYVSLPDEQTRELLLNRLLQKQGSPLD---TEALRRLAKITDGYSGSDLT 230 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHGGGSCCSC---HHHHHHHHHHTTTCCHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHhhC--CeEEEeCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHH
Confidence 123455666776542 22222 245677777888888888777654322111 2456788889999876 554
Q ss_pred HHH
Q 003753 331 TIG 333 (798)
Q Consensus 331 ~~g 333 (798)
.+.
T Consensus 231 ~l~ 233 (297)
T 3b9p_A 231 ALA 233 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 189
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.97 E-value=3.4e-06 Score=80.40 Aligned_cols=108 Identities=19% Similarity=0.108 Sum_probs=56.0
Q ss_pred CCCCcceeeeeccc-cccc-----ccHHHHhcCCceeEEeCCCCccccc-----ccccccCCCCCCEEEcCCCCCcc---
Q 003753 513 PCSPRLLTLLVRYT-MIKE-----FENKFFKSMYALRVLDSSQNAKLSK-----LHVGEGELIDLQYLNLSNTNICE--- 578 (798)
Q Consensus 513 ~~~~~L~~L~l~~~-~~~~-----l~~~~~~~l~~Lr~L~L~~~~~i~~-----lp~~i~~L~~L~~L~Ls~~~i~~--- 578 (798)
...++|++|+|++| .+.. +... +...++|++|+|++| .+.. +...+...++|++|+|++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~-L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEA-LKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHH-HTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHH-HHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 34556666777666 5542 2222 445566666666666 5542 23334444566666666665543
Q ss_pred --cCccccCCCcccEEeC--CCCCCccc-----ccchhhcCCCCCccccccCCCC
Q 003753 579 --LPIGIKSCTHLRTLLL--DGTENLKA-----IPVGMLSSLLSLRVFSWVPTRY 624 (798)
Q Consensus 579 --lp~~i~~l~~L~~L~l--~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~ 624 (798)
+...+...++|++|+| ++|. +.. +... +...++|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANM-LEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHH-HHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHH-HHhCCCcCEEeccCCCC
Confidence 3444555556666666 4454 332 1111 33445555555555443
No 190
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.96 E-value=0.00011 Score=75.88 Aligned_cols=169 Identities=16% Similarity=0.242 Sum_probs=98.5
Q ss_pred cccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHH
Q 003753 131 NIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIE 197 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 197 (798)
+++|.+..++++.+++.. ...+.+.|+|++|+|||+||+.+++.. .. ..+.+. ..
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~---~~i~v~------~~ 83 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QA---NFISIK------GP 83 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---EEEEEC------HH
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CC---CEEEEE------hH
Confidence 689999999888887742 335679999999999999999999876 21 223332 22
Q ss_pred HHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc----------------cccc-----CCC
Q 003753 198 KIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE----------------LSEA-----GVP 256 (798)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~----------------~~~~-----~~p 256 (798)
++.... .+.. .......+.......+.++++|+++.... ...+ +..
T Consensus 84 ~l~~~~---~g~~----------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 84 ELLTMW---FGES----------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp HHHHHH---HTTC----------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred HHHhhh---cCch----------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 332222 1211 11222333344446789999999874210 0111 111
Q ss_pred CCCCcEEEEeCCchHHh-hh-c---CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchH
Q 003753 257 VQNASKIVFTTIFEEVC-SS-M---SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLA 328 (798)
Q Consensus 257 ~~~gs~iivTTR~~~v~-~~-~---~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 328 (798)
...+..||.||...... .. . .....+.++..+.++-.++++..+.......+.++ ..+++.+.|.|-+
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 23456677777654321 11 1 12356788999999988888877654332222222 3455667776643
No 191
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.96 E-value=7.6e-05 Score=78.69 Aligned_cols=175 Identities=15% Similarity=0.247 Sum_probs=99.7
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCC-eEEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFG-AVIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
+++|.+..++.+...+..+..+.+.++|+.|+||||+|+.+++... ...+. .+..++.+.......+.. ++..+..
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~~ir~-~i~~~~~ 102 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGIDVVRN-QIKDFAS 102 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTTSCCSHHHHHT-HHHHHHH
T ss_pred HhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCcccccHHHHHH-HHHHHHh
Confidence 6789999999999988877665599999999999999999988762 12211 123333333222222211 1111100
Q ss_pred CCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc--c---ccccCCCCCCCcEEEEeCCchH-Hhhh-cCCCcce
Q 003753 210 DPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI--E---LSEAGVPVQNASKIVFTTIFEE-VCSS-MSVDWRF 282 (798)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~--~---~~~~~~p~~~gs~iivTTR~~~-v~~~-~~~~~~~ 282 (798)
.. ..+.+.+-++|+|+++... . +.+..-.....+++|++|.... +... ......+
T Consensus 103 ~~------------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 103 TR------------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp BC------------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred hc------------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeE
Confidence 00 0012346789999987542 1 1111000234566666664432 1111 1122467
Q ss_pred eccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHH
Q 003753 283 KVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLAL 329 (798)
Q Consensus 283 ~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 329 (798)
.+.+++.++..+.+.+.+.......+ .+..+.|++.++|.+--+
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHH
T ss_pred eccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 89999999988888876633222222 345677888888877643
No 192
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.95 E-value=3.4e-06 Score=84.57 Aligned_cols=105 Identities=19% Similarity=0.174 Sum_probs=69.8
Q ss_pred CCCccee--eeecccccccccH---HHHhcCCceeEEeCCCCccccccc---ccccCCCCCCEEEcCCCCCcccCccccC
Q 003753 514 CSPRLLT--LLVRYTMIKEFEN---KFFKSMYALRVLDSSQNAKLSKLH---VGEGELIDLQYLNLSNTNICELPIGIKS 585 (798)
Q Consensus 514 ~~~~L~~--L~l~~~~~~~l~~---~~~~~l~~Lr~L~L~~~~~i~~lp---~~i~~L~~L~~L~Ls~~~i~~lp~~i~~ 585 (798)
..+.|.. ++++.|....++. ....++++|+.|+|++| .++.++ ..+..+++|++|+|++|.|..+. .+..
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~ 216 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDK 216 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGG
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhh
Confidence 3445555 5556664333332 22357889999999999 887654 55668899999999999888763 4555
Q ss_pred CC--cccEEeCCCCCCcccccc------hhhcCCCCCcccccc
Q 003753 586 CT--HLRTLLLDGTENLKAIPV------GMLSSLLSLRVFSWV 620 (798)
Q Consensus 586 l~--~L~~L~l~~~~~l~~lp~------~~i~~L~~L~~L~l~ 620 (798)
+. +|++|+|++|..-..+|. .++..+++|+.|+-.
T Consensus 217 l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 217 IKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred cccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 55 888999988873333441 236677788777643
No 193
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.94 E-value=0.00024 Score=74.01 Aligned_cols=175 Identities=14% Similarity=0.143 Sum_probs=101.8
Q ss_pred CcccchhHHHHHHHHHhhc------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHH
Q 003753 130 NNIVGIESRLSEVWRYIED------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIE 197 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 197 (798)
.+++|.+..++.|.+.+.. ...+-+.++|++|+|||+||+.+++... .. ..+.+..+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~---~~~~i~~~~l~--- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NS---TFFSISSSDLV--- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SC---EEEEEECCSSC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--CC---cEEEEEhHHHH---
Confidence 3688999999888877621 1236789999999999999999998751 11 22334433211
Q ss_pred HHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc-------------cccc-----CCC-CC
Q 003753 198 KIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE-------------LSEA-----GVP-VQ 258 (798)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-------------~~~~-----~~p-~~ 258 (798)
.. +...........+...-..++.+|++|+++.... ...+ +.. ..
T Consensus 84 -----------~~-----~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 147 (322)
T 1xwi_A 84 -----------SK-----WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 147 (322)
T ss_dssp -----------CS-----SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred -----------hh-----hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccC
Confidence 00 1122222222222333345788999999976410 0000 111 12
Q ss_pred CCcEEEEeCCchH-----HhhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCch-HHHHH
Q 003753 259 NASKIVFTTIFEE-----VCSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPL-ALVTI 332 (798)
Q Consensus 259 ~gs~iivTTR~~~-----v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 332 (798)
.+..||.||.... +.+ .....+.++..+.++-.++++..+........ ......|++.+.|..- .|..+
T Consensus 148 ~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT---EADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC---HHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 3445555665332 222 23356788888999999999887754332211 2356788888988743 35554
Q ss_pred H
Q 003753 333 G 333 (798)
Q Consensus 333 g 333 (798)
.
T Consensus 223 ~ 223 (322)
T 1xwi_A 223 V 223 (322)
T ss_dssp H
T ss_pred H
Confidence 4
No 194
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.92 E-value=0.00011 Score=80.75 Aligned_cols=147 Identities=14% Similarity=0.144 Sum_probs=82.3
Q ss_pred CcccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcC---CC-C-eEEEEEcCCccCHHHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSH---KF-G-AVIMVKASTELNIEKIQDVIR 204 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f-~-~~~wv~vs~~~~~~~~~~~i~ 204 (798)
+.++||+.+++++++.|......-+.++|.+|+|||++|+.+++.... .. .. + .++.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~-~~~p~~l~~~~~~~l~~~------------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN-NEVPEILRDKRVMTLDMG------------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS-SCSCTTTSSCCEECC----------------
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHh-CCCChhhcCCeEEEeeCC-------------
Confidence 369999999999999997655566789999999999999999988621 11 00 1 12222222
Q ss_pred HHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcccccccCCC--CCCCcEEEEeCCchHHhh-------h
Q 003753 205 SRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIELSEAGVP--VQNASKIVFTTIFEEVCS-------S 275 (798)
Q Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~~p--~~~gs~iivTTR~~~v~~-------~ 275 (798)
+ .. ...........+...-..++.+|++| ...+......+ .....++|.+|....... .
T Consensus 246 ---~-~~-----~g~~e~~~~~~~~~~~~~~~~iLfiD---~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al 313 (468)
T 3pxg_A 246 ---T-KY-----RGEFEDRLKKVMDEIRQAGNIILFID---AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAAL 313 (468)
T ss_dssp ----------------CTTHHHHHHHHHTCCCCEEEEC---C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred ---c-cc-----cchHHHHHHHHHHHHHhcCCeEEEEe---CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHH
Confidence 0 00 00001111222222333567889999 12222222333 233456666665443110 0
Q ss_pred cCCCcceeccCCChHHHHHHHHHhccC
Q 003753 276 MSVDWRFKVDYLPQEEAWNLFRLKVTD 302 (798)
Q Consensus 276 ~~~~~~~~l~~L~~~~a~~Lf~~~~~~ 302 (798)
..-...+.++..+.++..+++...+..
T Consensus 314 ~~Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 314 ERRFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp HHSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred HHhCccceeCCCCHHHHHHHHHHHHHH
Confidence 011236899999999999999876543
No 195
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.91 E-value=9.2e-05 Score=77.32 Aligned_cols=173 Identities=18% Similarity=0.180 Sum_probs=101.3
Q ss_pred CcccchhHHHHHHHHHhhc------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHH
Q 003753 130 NNIVGIESRLSEVWRYIED------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIE 197 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 197 (798)
.+++|.+..+++|.+.+.- ...+-+.++|++|+|||+||+.+++.. ... .+.++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCC---EEEEchH------
Confidence 3689999999999888721 124579999999999999999999876 222 2333321
Q ss_pred HHHHHHHHHcCCCCCCCccccCCHHHHHHHHH-HHhcCCcEEEEEecccCccc-------------cccc-----CCC-C
Q 003753 198 KIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF-RRLSNKKFALLLDDLRERIE-------------LSEA-----GVP-V 257 (798)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~l~~~r~LlVlDdv~~~~~-------------~~~~-----~~p-~ 257 (798)
++. . .. .. ........+. ..-..++.+|+||+++.... ...+ +.. .
T Consensus 86 ~l~----~----~~-----~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 151 (322)
T 3eie_A 86 DLV----S----KW-----MG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 151 (322)
T ss_dssp HHH----T----TT-----GG-GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS
T ss_pred HHh----h----cc-----cc-hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc
Confidence 111 0 00 11 1222223332 23345678999999975421 0111 011 2
Q ss_pred CCCcEEEEeCCchHH-----hhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCC-chHHHH
Q 003753 258 QNASKIVFTTIFEEV-----CSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGL-PLALVT 331 (798)
Q Consensus 258 ~~gs~iivTTR~~~v-----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~ 331 (798)
..+..||.||..... .+. ....+.++..+.++-.++++..+........ ......|++.+.|. +-.|..
T Consensus 152 ~~~v~vi~atn~~~~ld~al~~R--f~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~l~~la~~t~g~sg~di~~ 226 (322)
T 3eie_A 152 SQGVLVLGATNIPWQLDSAIRRR--FERRIYIPLPDLAARTTMFEINVGDTPCVLT---KEDYRTLGAMTEGYSGSDIAV 226 (322)
T ss_dssp CCCEEEEEEESCGGGSCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHTTCCCCCC---HHHHHHHHHTTTTCCHHHHHH
T ss_pred CCceEEEEecCChhhCCHHHHcc--cCeEEEeCCCCHHHHHHHHHHHhccCCCCCC---HHHHHHHHHHcCCCCHHHHHH
Confidence 344556667765322 222 2345778889999999999988765432212 23467788888874 434444
Q ss_pred HH
Q 003753 332 IG 333 (798)
Q Consensus 332 ~g 333 (798)
+.
T Consensus 227 l~ 228 (322)
T 3eie_A 227 VV 228 (322)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 196
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.91 E-value=7e-05 Score=78.41 Aligned_cols=170 Identities=11% Similarity=0.071 Sum_probs=98.8
Q ss_pred CcccchhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcC
Q 003753 130 NNIVGIESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLG 208 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 208 (798)
.+++|.+..++.+.+++..+.. .++.+.|++|+|||++|+.+++... ..++.++.+.. ....+...+.....
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~------~~~~~i~~~~~-~~~~i~~~~~~~~~ 98 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN------ADMMFVNGSDC-KIDFVRGPLTNFAS 98 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT------EEEEEEETTTC-CHHHHHTHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC------CCEEEEccccc-CHHHHHHHHHHHHh
Confidence 4799999999999999986554 5777888899999999999988751 23455554432 22222111111110
Q ss_pred CCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc--cccccCCC----CCCCcEEEEeCCchH-----HhhhcC
Q 003753 209 IDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI--ELSEAGVP----VQNASKIVFTTIFEE-----VCSSMS 277 (798)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~--~~~~~~~p----~~~gs~iivTTR~~~-----v~~~~~ 277 (798)
... ..+++-++++||++... +....... ...+.++|+||.... +...+
T Consensus 99 ~~~--------------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~- 157 (324)
T 3u61_B 99 AAS--------------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC- 157 (324)
T ss_dssp BCC--------------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS-
T ss_pred hcc--------------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC-
Confidence 000 12367899999998653 11111111 234567777776543 12222
Q ss_pred CCcceeccCCChHHHHHHHH-------HhccCcccCCChhHHHHHHHHHHHhCCCchHHHH
Q 003753 278 VDWRFKVDYLPQEEAWNLFR-------LKVTDEVLNSHPEIRELAETVANMCGGLPLALVT 331 (798)
Q Consensus 278 ~~~~~~l~~L~~~~a~~Lf~-------~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 331 (798)
..+.+++++.++-.+++. +.+.......++ .+....|++.++|.+-.+..
T Consensus 158 --~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 158 --RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp --EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHH
T ss_pred --cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHH
Confidence 468999999887543332 222222211111 25677788888887764433
No 197
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.90 E-value=7.2e-06 Score=76.13 Aligned_cols=84 Identities=10% Similarity=0.072 Sum_probs=54.0
Q ss_pred CceeEEeCCCCcccccc-cccccCCCCCCEEEcCCC-CCccc-CccccCC----CcccEEeCCCCCCcccccchhhcCCC
Q 003753 540 YALRVLDSSQNAKLSKL-HVGEGELIDLQYLNLSNT-NICEL-PIGIKSC----THLRTLLLDGTENLKAIPVGMLSSLL 612 (798)
Q Consensus 540 ~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~Ls~~-~i~~l-p~~i~~l----~~L~~L~l~~~~~l~~lp~~~i~~L~ 612 (798)
.+|+.||+++| .++.. -..+..+++|++|+|++| .|+.- -..+..+ ++|++|+|++|..+++-.-..+.+++
T Consensus 61 ~~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 56889999988 67643 244677888888888887 35431 1123333 36778888777666654333356677
Q ss_pred CCccccccCCCC
Q 003753 613 SLRVFSWVPTRY 624 (798)
Q Consensus 613 ~L~~L~l~~~~~ 624 (798)
+|++|++++|..
T Consensus 140 ~L~~L~L~~c~~ 151 (176)
T 3e4g_A 140 NLKYLFLSDLPG 151 (176)
T ss_dssp TCCEEEEESCTT
T ss_pred CCCEEECCCCCC
Confidence 777777777653
No 198
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.87 E-value=0.00015 Score=76.75 Aligned_cols=173 Identities=17% Similarity=0.164 Sum_probs=100.1
Q ss_pred cccchhHHHHHHHHHhhc------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHH
Q 003753 131 NIVGIESRLSEVWRYIED------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEK 198 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 198 (798)
+++|.+..++.|.+.+.. ...+-|.|+|++|+|||+||+.+++.. .. ..+.+..+ +
T Consensus 52 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~---~~~~v~~~------~ 119 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NS---TFFSVSSS------D 119 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TC---EEEEEEHH------H
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CC---CEEEeeHH------H
Confidence 689999999999887721 123458899999999999999999886 22 22333322 1
Q ss_pred HHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc-------------cccc-----CCC-CCC
Q 003753 199 IQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE-------------LSEA-----GVP-VQN 259 (798)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-------------~~~~-----~~p-~~~ 259 (798)
+. ... ...........+...-..++.+|+||+++.... ...+ +.. ...
T Consensus 120 l~----~~~---------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 120 LV----SKW---------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp HH----SCC------------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred Hh----hhh---------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 11 100 111222222222233345789999999985421 1111 000 134
Q ss_pred CcEEEEeCCchH-----HhhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCC-chHHHHHH
Q 003753 260 ASKIVFTTIFEE-----VCSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGL-PLALVTIG 333 (798)
Q Consensus 260 gs~iivTTR~~~-----v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~g 333 (798)
+..||.||.... +.. .....+.++..+.++-.+++...+........ ......|++.+.|. +-.|..+.
T Consensus 187 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 455666665432 222 23456788888999999999888764432111 23467788889885 43444443
No 199
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.83 E-value=4.4e-05 Score=73.82 Aligned_cols=116 Identities=19% Similarity=0.237 Sum_probs=64.5
Q ss_pred cccchh----HHHHHHHHHhhcC----CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHH
Q 003753 131 NIVGIE----SRLSEVWRYIEDD----GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDV 202 (798)
Q Consensus 131 ~~vGr~----~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 202 (798)
+|++.+ ..++.+.+++... ....+.|+|++|+||||||+.+++... .....++|++++ ++...
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~~------~~~~~ 96 (202)
T 2w58_A 26 DVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYVP------ELFRE 96 (202)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEHH------HHHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEhH------HHHHH
Confidence 455433 3455556666443 127899999999999999999998873 333456666543 44444
Q ss_pred HHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCc--cccccc-CC-C-----CCCCcEEEEeCCc
Q 003753 203 IRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRER--IELSEA-GV-P-----VQNASKIVFTTIF 269 (798)
Q Consensus 203 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~~-~~-p-----~~~gs~iivTTR~ 269 (798)
+...... .........+ .+. -+|||||++.. .+|... .+ . ...+.++|+||..
T Consensus 97 ~~~~~~~---------~~~~~~~~~~----~~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 97 LKHSLQD---------QTMNEKLDYI----KKV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHC------------CCCHHHHHHH----HHS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHhcc---------chHHHHHHHh----cCC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 4432211 1122222222 222 39999999653 222221 11 1 2356678888864
No 200
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.82 E-value=0.00028 Score=74.02 Aligned_cols=167 Identities=11% Similarity=0.091 Sum_probs=97.8
Q ss_pred hhHHHHHHHHHhhcCCc-eEEEEEecCCchHHHHHHHHHHHhhhhc-------------------CCCCeEEEEEcC---
Q 003753 135 IESRLSEVWRYIEDDGV-KIIGLYGVRGVGKSTLLKQLNDTFSDMS-------------------HKFGAVIMVKAS--- 191 (798)
Q Consensus 135 r~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~vs--- 191 (798)
.++..+.+.+.+..+.. +.+.++|+.|+||||+|+.+.+...... .+++ ..++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 85 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGK 85 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTC
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccC
Confidence 45667777777776654 5799999999999999999988762110 1122 2233221
Q ss_pred CccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc-----ccccc-CCCCCCCcEEEE
Q 003753 192 TELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI-----ELSEA-GVPVQNASKIVF 265 (798)
Q Consensus 192 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~-----~~~~~-~~p~~~gs~iiv 265 (798)
....++++ +++.+.+...+ ..+++-++|+|+++... .+.+. .- ...++.+|+
T Consensus 86 ~~~~i~~i-r~l~~~~~~~~--------------------~~~~~kvviIdead~l~~~a~naLLk~lEe-p~~~~~~Il 143 (334)
T 1a5t_A 86 NTLGVDAV-REVTEKLNEHA--------------------RLGGAKVVWVTDAALLTDAAANALLKTLEE-PPAETWFFL 143 (334)
T ss_dssp SSBCHHHH-HHHHHHTTSCC--------------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTS-CCTTEEEEE
T ss_pred CCCCHHHH-HHHHHHHhhcc--------------------ccCCcEEEEECchhhcCHHHHHHHHHHhcC-CCCCeEEEE
Confidence 11112111 12222221111 12467899999998653 12121 11 234566666
Q ss_pred eCCchH-Hhhh-cCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003753 266 TTIFEE-VCSS-MSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTI 332 (798)
Q Consensus 266 TTR~~~-v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 332 (798)
+|.+.+ +... ......+.+.++++++..+.+.+... .+ .+.+..+++.++|.|..+..+
T Consensus 144 ~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 144 ATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT-----MS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----CC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred EeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 665542 3211 12335789999999999999988751 11 234678999999999766544
No 201
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.81 E-value=0.00054 Score=73.54 Aligned_cols=173 Identities=14% Similarity=0.107 Sum_probs=99.2
Q ss_pred cccchhHHHHHHHHHhhc------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHH
Q 003753 131 NIVGIESRLSEVWRYIED------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEK 198 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 198 (798)
+++|.+..++.+.+++.. ...+-+.|+|.+|+|||++|+.+++.. .. ..+.++.+.-.. .
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~--~ 187 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTS--K 187 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC-----
T ss_pred HhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhc--c
Confidence 699999999999988822 224689999999999999999998775 21 233443332211 0
Q ss_pred HHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc--------c----c-cccC-----CC--CC
Q 003753 199 IQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI--------E----L-SEAG-----VP--VQ 258 (798)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~--------~----~-~~~~-----~p--~~ 258 (798)
+...........+...-...+.+|+||+++... + . ..+. .. ..
T Consensus 188 -----------------~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 188 -----------------YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred -----------------ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 011111222222222233466899999997541 0 0 0010 00 12
Q ss_pred CCcEEEEeCCchHH-----hhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCch-HHHHH
Q 003753 259 NASKIVFTTIFEEV-----CSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPL-ALVTI 332 (798)
Q Consensus 259 ~gs~iivTTR~~~v-----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 332 (798)
....||.||..... ... ....+.++..+.++..+++...+........ .+....|++.+.|..- +|..+
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R--~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRR--FIKRVYVSLPNEETRLLLLKNLLCKQGSPLT---QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTT--CCEEEECCCCCHHHHHHHHHHHHTTSCCCSC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcC--cceEEEcCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 33455656654322 221 2345788889999999999887754332222 3356788888988654 55444
Q ss_pred H
Q 003753 333 G 333 (798)
Q Consensus 333 g 333 (798)
.
T Consensus 326 ~ 326 (389)
T 3vfd_A 326 A 326 (389)
T ss_dssp H
T ss_pred H
Confidence 3
No 202
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.79 E-value=7.4e-05 Score=88.87 Aligned_cols=153 Identities=15% Similarity=0.216 Sum_probs=86.0
Q ss_pred CcccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhc--CC--CCeEEEEEcCCccCHHHHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMS--HK--FGAVIMVKASTELNIEKIQDVIRS 205 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~--f~~~~wv~vs~~~~~~~~~~~i~~ 205 (798)
..++||+.+++++++.|......-+.++|.+|+||||+|+.+++...... .. -..++++.++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----------
Confidence 36899999999999999776666788999999999999999998762210 00 12344443322100
Q ss_pred HcCCCCCCCccccCCHHHHHHHHHHHhc--CCcEEEEEecccCcc---------cccccCCC--CCCCcEEEEeCCchHH
Q 003753 206 RLGIDPDGDKWKNRDDQGRAAEIFRRLS--NKKFALLLDDLRERI---------ELSEAGVP--VQNASKIVFTTIFEEV 272 (798)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~---------~~~~~~~p--~~~gs~iivTTR~~~v 272 (798)
+.. ...+.......+.+.+. +++.+|++|++.... +......+ ...+..+|.+|.....
T Consensus 240 --g~~------~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 240 --GAK------YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEY 311 (854)
T ss_dssp --------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHH
T ss_pred --cCc------cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHH
Confidence 000 11123333333333333 368999999997642 11112222 2334556665554432
Q ss_pred h-----hhc-CCCcceeccCCChHHHHHHHHHhc
Q 003753 273 C-----SSM-SVDWRFKVDYLPQEEAWNLFRLKV 300 (798)
Q Consensus 273 ~-----~~~-~~~~~~~l~~L~~~~a~~Lf~~~~ 300 (798)
. ..+ .-...+.+++++.++..++++...
T Consensus 312 ~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 1 111 122358999999999999997543
No 203
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.78 E-value=0.00013 Score=78.62 Aligned_cols=106 Identities=14% Similarity=0.130 Sum_probs=67.1
Q ss_pred CCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccc-ccccCCCCCCEEEcCCCCCcccCccccCCCcc
Q 003753 511 TPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLSNTNICELPIGIKSCTHL 589 (798)
Q Consensus 511 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~Ls~~~i~~lp~~i~~l~~L 589 (798)
.+.+|++|+.+.+.++ +..++...|.++.+|+.+++..+ ++.++ ..+.++..|+.+.+..+. ..+........+|
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~-~~i~~~~~~~~~l 232 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSL-YYLGDFALSKTGV 232 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTC-CEECTTTTTTCCC
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCc-eEeehhhcccCCC
Confidence 3567778888877654 45677777888888888887665 55553 456667777777665542 2233333445667
Q ss_pred cEEeCCCCCCcccccchhhcCCCCCccccccCC
Q 003753 590 RTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPT 622 (798)
Q Consensus 590 ~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 622 (798)
+.+.+... +..++...+..+.+|+.+.+..+
T Consensus 233 ~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 233 KNIIIPDS--FTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp CEEEECTT--CCEECSSTTTTCSSCCEEEECCT
T ss_pred ceEEECCC--ceecccccccccccceeEEcCCC
Confidence 77776543 45566555667777777776543
No 204
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.77 E-value=2.8e-05 Score=73.62 Aligned_cols=113 Identities=15% Similarity=0.197 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHhhc---CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCC
Q 003753 135 IESRLSEVWRYIED---DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDP 211 (798)
Q Consensus 135 r~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 211 (798)
....++.+.+++.+ .....+.|+|++|+||||||+.+++..... ..+ .++++ +..++...+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-~g~-~~~~~------~~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK-KGI-RGYFF------DTKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH-SCC-CCCEE------EHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH-cCC-eEEEE------EHHHHHHHHHHHhcCch
Confidence 44555555555543 335789999999999999999999887311 222 22333 34455555544432111
Q ss_pred CCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCc--cccccc-C---CC--CCCCcEEEEeCCc
Q 003753 212 DGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRER--IELSEA-G---VP--VQNASKIVFTTIF 269 (798)
Q Consensus 212 ~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~~-~---~p--~~~gs~iivTTR~ 269 (798)
..... +.+. +.-+|||||++.. ..+... . +. ...|..+|+||..
T Consensus 91 ---------~~~~~----~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 91 ---------DTKFL----KTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp ---------CSHHH----HHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred ---------HHHHH----HHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 01122 2222 4568899999742 222211 0 11 2357788888863
No 205
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.76 E-value=1.1e-05 Score=76.78 Aligned_cols=119 Identities=11% Similarity=0.039 Sum_probs=87.1
Q ss_pred HHHhcCCceeEEeCCCCcccc-----cccccccCCCCCCEEEcCCCCCcc-----cCccccCCCcccEEeCCCCCCccc-
Q 003753 534 KFFKSMYALRVLDSSQNAKLS-----KLHVGEGELIDLQYLNLSNTNICE-----LPIGIKSCTHLRTLLLDGTENLKA- 602 (798)
Q Consensus 534 ~~~~~l~~Lr~L~L~~~~~i~-----~lp~~i~~L~~L~~L~Ls~~~i~~-----lp~~i~~l~~L~~L~l~~~~~l~~- 602 (798)
..+...+.|++|+|++|..+. .+...+...++|++|+|++|.|.. +...+...++|++|+|++|. +..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHH
Confidence 347788999999999983443 345667778999999999998863 45566677899999999997 654
Q ss_pred ----ccchhhcCCCCCccccc--cCCCCCCccCCCCCCCcccccHHHhccCCCCCeeEEEEecccc
Q 003753 603 ----IPVGMLSSLLSLRVFSW--VPTRYAGFNYGSSVPGVTVLLLEELESLKHLQEISVIILTIDS 662 (798)
Q Consensus 603 ----lp~~~i~~L~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~ 662 (798)
+... +...++|++|++ ++|.+.... .......+...++|+.|+++.+....
T Consensus 109 g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g--------~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 109 GILALVEA-LQSNTSLIELRIDNQSQPLGNNV--------EMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHG-GGGCSSCCEEECCCCSSCCCHHH--------HHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHH-HHhCCCceEEEecCCCCCCCHHH--------HHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 3333 777889999999 778765100 01133456677899999998776543
No 206
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.73 E-value=0.00045 Score=73.93 Aligned_cols=121 Identities=12% Similarity=0.097 Sum_probs=74.4
Q ss_pred hceeeEEeecCCCCCCCCCC-CCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCcccccccccccCCCCCCEEE
Q 003753 492 KEAVRVSLWRSPSIDSLSPT-PPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLHVGEGELIDLQYLN 570 (798)
Q Consensus 492 ~~l~~lsl~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~ 570 (798)
.+++.+.+.. .++.++.. +.+|.+|+.+.+..+ ++.++..+|.++ .|..+.+..+ ++.++...-...+|+.+.
T Consensus 46 ~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L~~i~ 119 (379)
T 4h09_A 46 DRISEVRVNS--GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDLDDFE 119 (379)
T ss_dssp GGCSEEEECT--TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCCSEEE
T ss_pred cCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccCCccccc
Confidence 4677777764 46666533 478888988888654 778888888887 4666665543 666654433334788888
Q ss_pred cCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccC
Q 003753 571 LSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVP 621 (798)
Q Consensus 571 Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~ 621 (798)
+..+ +..+......-.+|..+.+..+ +..+....+..+.+|....+..
T Consensus 120 lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 120 FPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp CCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECT
T ss_pred CCCc-cccccccccccceeeeeeccce--eeccccchhccccccccccccc
Confidence 8654 3334332222235666655443 5556555566777777666654
No 207
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.73 E-value=0.00053 Score=74.82 Aligned_cols=175 Identities=15% Similarity=0.120 Sum_probs=98.7
Q ss_pred CcccchhHHHHHHHHHhhc------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHH
Q 003753 130 NNIVGIESRLSEVWRYIED------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIE 197 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 197 (798)
.+++|.+..++.|.+.+.. ...+-+.++|++|+|||+||+.+++... . ...+.+..+.-
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~---~--~~~~~v~~~~l---- 204 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN---N--STFFSISSSDL---- 204 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC---S--SEEEEECCC------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC---C--CCEEEEeHHHH----
Confidence 3689999999999887721 2346799999999999999999988751 1 12223332211
Q ss_pred HHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc-------------ccccC-----CC-CC
Q 003753 198 KIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE-------------LSEAG-----VP-VQ 258 (798)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-------------~~~~~-----~p-~~ 258 (798)
.... .+. ....... .+...-..++.+|+||+++.... ...+. .. ..
T Consensus 205 --~~~~---~g~-------~~~~~~~---~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 205 --VSKW---LGE-------SEKLVKN---LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp -------------------CCCTHHH---HHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred --Hhhh---cch-------HHHHHHH---HHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 1100 110 1111122 22222245788999999985410 00110 00 13
Q ss_pred CCcEEEEeCCchHH-----hhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc-hHHHHH
Q 003753 259 NASKIVFTTIFEEV-----CSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP-LALVTI 332 (798)
Q Consensus 259 ~gs~iivTTR~~~v-----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 332 (798)
.+..||.||..... .+ .....+.++..+.++-..+|...+........ ......|++.+.|.. -.|..+
T Consensus 270 ~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT---EADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 45566667754422 22 22346778888888888999888754322111 234677888898854 344444
Q ss_pred H
Q 003753 333 G 333 (798)
Q Consensus 333 g 333 (798)
.
T Consensus 345 ~ 345 (444)
T 2zan_A 345 V 345 (444)
T ss_dssp H
T ss_pred H
Confidence 3
No 208
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00027 Score=74.54 Aligned_cols=168 Identities=17% Similarity=0.203 Sum_probs=99.4
Q ss_pred CcccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCH
Q 003753 130 NNIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNI 196 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 196 (798)
.++.|.++.+++|.+.+.- ...+-|.++|++|+|||.||+++++.. ... .+.+..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCK---FIRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCE---EEEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCC---ceEEEhHHhhc-
Confidence 4678999999888776621 235678899999999999999999987 222 24444333211
Q ss_pred HHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc----------c------cccc-----CC
Q 003753 197 EKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI----------E------LSEA-----GV 255 (798)
Q Consensus 197 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~----------~------~~~~-----~~ 255 (798)
.+...+...+.......-...+++|++|+++... + +..+ ++
T Consensus 221 ------------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 221 ------------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp ------------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred ------------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 0111122222222223334578999999987531 0 0001 11
Q ss_pred CCCCCcEEEEeCCchHH-----hhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc
Q 003753 256 PVQNASKIVFTTIFEEV-----CSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP 326 (798)
Q Consensus 256 p~~~gs~iivTTR~~~v-----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 326 (798)
....+..||.||...+. .+...-+..+.++.-+.++-.++|+.++.........+ ..+|++.+.|.-
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 23344456667764433 22123456788888888888899987775543322233 356677777764
No 209
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.72 E-value=0.00029 Score=82.70 Aligned_cols=148 Identities=14% Similarity=0.138 Sum_probs=83.7
Q ss_pred CcccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCC---CCe-EEEEEcCCccCHHHHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHK---FGA-VIMVKASTELNIEKIQDVIRS 205 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~-~~wv~vs~~~~~~~~~~~i~~ 205 (798)
..++||+.+++++.+.|......-+.++|.+|+|||++|+.+++........ .+. ++.++.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------
Confidence 3699999999999999977665668899999999999999998886211000 111 111211
Q ss_pred HcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcccccccCCC--CCCCcEEEEeCCchHHhhh-------c
Q 003753 206 RLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIELSEAGVP--VQNASKIVFTTIFEEVCSS-------M 276 (798)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~~p--~~~gs~iivTTR~~~v~~~-------~ 276 (798)
+... ...........+...-..++.+|++|. ..+......| .....++|.||........ .
T Consensus 245 --g~~~-----~G~~e~~l~~~~~~~~~~~~~iLfiD~---~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 245 --GTKY-----RGEFEDRLKKVMDEIRQAGNIILFIDA---AIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALE 314 (758)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEECC-----------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred --cccc-----cchHHHHHHHHHHHHHhcCCEEEEEcC---chhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHH
Confidence 1110 111111222233333346788999992 2222233333 3344566766654441000 0
Q ss_pred CCCcceeccCCChHHHHHHHHHhccC
Q 003753 277 SVDWRFKVDYLPQEEAWNLFRLKVTD 302 (798)
Q Consensus 277 ~~~~~~~l~~L~~~~a~~Lf~~~~~~ 302 (798)
.-...+.++..+.++..+++......
T Consensus 315 rRf~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 315 RRFQPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 01146899999999999999876543
No 210
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.68 E-value=0.00092 Score=71.92 Aligned_cols=264 Identities=13% Similarity=0.143 Sum_probs=153.8
Q ss_pred chhceeeEEeecC--CCCCCCCC-CCCCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccc-ccccCCCC
Q 003753 490 SWKEAVRVSLWRS--PSIDSLSP-TPPCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLH-VGEGELID 565 (798)
Q Consensus 490 ~~~~l~~lsl~~~--~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~ 565 (798)
...+++.+.+..+ ..+..+.. .+..|.+|+.+.+..+ ++.++...|..+.+|+.+.+..+ +..++ ..+..+.+
T Consensus 85 ~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~ 161 (394)
T 4gt6_A 85 NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYS 161 (394)
T ss_dssp TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTT
T ss_pred CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce--eeeecccceecccc
Confidence 3457888888654 13555542 3477889998887654 77888888999999999999765 55553 45778889
Q ss_pred CCEEEcCCCCCcccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCCCCccC----------------
Q 003753 566 LQYLNLSNTNICELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRYAGFNY---------------- 629 (798)
Q Consensus 566 L~~L~Ls~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~---------------- 629 (798)
|+.+.+..+ +..+........+|+.+.+..+ +..+....+..+.+|...............
T Consensus 162 L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (394)
T 4gt6_A 162 LHTVTLPDS-VTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRY 238 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCCCSEEEECTT--CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEEC
T ss_pred cccccccce-eeEeccccccccceeEEEECCc--ccccccchhhhccccceecccccccccccceeeccccccccccccc
Confidence 999988764 5555443334467888887654 455555556677777665544322111000
Q ss_pred -------CCCCCC-cccccHHHhccCCCCCeeEEEEecccchhhhhhhhhhcccceeeee-----ccCc---hhhhccCc
Q 003753 630 -------GSSVPG-VTVLLLEELESLKHLQEISVIILTIDSLNKLKSSLKLQSCIRRLVM-----GLPE---AIFSQDLQ 693 (798)
Q Consensus 630 -------~~~~~~-~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l-----~lp~---~~lp~~L~ 693 (798)
.+.++. ........+.++.+|+.+.+... ...+... ....+..|+.+.+ .++. ... .+|+
T Consensus 239 ~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~--aF~~c~~L~~i~l~~~i~~I~~~aF~~c-~~L~ 314 (394)
T 4gt6_A 239 PSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS-VVSIGTG--AFMNCPALQDIEFSSRITELPESVFAGC-ISLK 314 (394)
T ss_dssp CTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT-CCEECTT--TTTTCTTCCEEECCTTCCEECTTTTTTC-TTCC
T ss_pred ccccccceEEcCCcceEcccceeeecccccEEecccc-cceecCc--ccccccccccccCCCcccccCceeecCC-CCcC
Confidence 000111 01112234556677776665211 1111111 1122345666655 2333 334 6899
Q ss_pred eEEeeccCCCCCC--cccCCCCccEEEeecCCchhhhhccccccCCCCcccccccccceeecCCccchhhcccCCCCCCC
Q 003753 694 DLSIINCSIKDLT--CIVYIPRLRFLFAKDCPSLEEIIASDLRFEPSEENLSMFLHLRQAYFFKLPNLKNICHKAMAFPS 771 (798)
Q Consensus 694 ~L~L~~~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~ 771 (798)
.+.|..+ ++.+. .+..+.+|+.+.|.. .++.+.. ..+.++++|+.+.+.+.. ..+ .....+.+
T Consensus 315 ~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~---------~aF~~C~~L~~i~~~~~~--~~~-~~~~~~~~ 379 (394)
T 4gt6_A 315 SIDIPEG-ITQILDDAFAGCEQLERIAIPS--SVTKIPE---------SAFSNCTALNNIEYSGSR--SQW-NAISTDSG 379 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEECT--TCCBCCG---------GGGTTCTTCCEEEESSCH--HHH-HTCBCCCC
T ss_pred EEEeCCc-ccEehHhHhhCCCCCCEEEECc--ccCEEhH---------hHhhCCCCCCEEEECCce--eeh-hhhhccCC
Confidence 9998764 44443 578899999999964 3555422 467789999999998732 222 23445678
Q ss_pred cceeeec
Q 003753 772 LERIYVH 778 (798)
Q Consensus 772 L~~L~l~ 778 (798)
|+.+.+.
T Consensus 380 L~~i~i~ 386 (394)
T 4gt6_A 380 LQNLPVA 386 (394)
T ss_dssp C------
T ss_pred CCEEEeC
Confidence 8888775
No 211
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00047 Score=73.71 Aligned_cols=168 Identities=16% Similarity=0.222 Sum_probs=99.1
Q ss_pred CcccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCH
Q 003753 130 NNIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNI 196 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 196 (798)
.++.|.++.+++|.+.+.- ...+-|.++|++|+|||+||+++++.. ... .+.+..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~---fi~vs~s~L~s- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DAT---FIRVIGSELVQ- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCC-
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCC---eEEEEhHHhhc-
Confidence 4688999999888876521 346789999999999999999999987 222 23444332110
Q ss_pred HHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc--------------------cccc-CC
Q 003753 197 EKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE--------------------LSEA-GV 255 (798)
Q Consensus 197 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~--------------------~~~~-~~ 255 (798)
. +.......+.......-...+++|++|+++.... +..+ +.
T Consensus 282 -------------k-----~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 282 -------------K-----YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp -------------C-----SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred -------------c-----cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence 0 1112222222222333346789999999875310 0000 11
Q ss_pred CCCCCcEEEEeCCchHH-----hhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc
Q 003753 256 PVQNASKIVFTTIFEEV-----CSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP 326 (798)
Q Consensus 256 p~~~gs~iivTTR~~~v-----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 326 (798)
....+..||.||...+. .+...-...+.++..+.++-.++|+.++.........+ ...|++.+.|.-
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 12344456667754433 22112456788888888888899988775543322223 355777787764
No 212
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.65 E-value=4e-05 Score=76.81 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=59.7
Q ss_pred CCcceeeeecccccccccH--HHHhcCCceeEEeCCCCcccccccccccCCC--CCCEEEcCCCCCcc-cC-------cc
Q 003753 515 SPRLLTLLVRYTMIKEFEN--KFFKSMYALRVLDSSQNAKLSKLHVGEGELI--DLQYLNLSNTNICE-LP-------IG 582 (798)
Q Consensus 515 ~~~L~~L~l~~~~~~~l~~--~~~~~l~~Lr~L~L~~~~~i~~lp~~i~~L~--~L~~L~Ls~~~i~~-lp-------~~ 582 (798)
+++|++|+|++|.+..++. ..+..+++|++|+|++| .++.+. .+..+. +|++|+|++|.+.. +| ..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 5578888888887776553 34778999999999999 888773 355555 89999999998863 44 23
Q ss_pred ccCCCcccEEeC
Q 003753 583 IKSCTHLRTLLL 594 (798)
Q Consensus 583 i~~l~~L~~L~l 594 (798)
+..+++|+.||-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 678899999874
No 213
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.63 E-value=0.00036 Score=76.72 Aligned_cols=166 Identities=16% Similarity=0.215 Sum_probs=97.7
Q ss_pred cccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHH
Q 003753 131 NIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIE 197 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 197 (798)
+++|.+..+++|.+++.. ...+-+.|+|.+|+|||++|+.+++.. .. ..+.++.+
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~---~fv~vn~~------ 272 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GA---FFFLINGP------ 272 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SS---EEEEEEHH------
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CC---CEEEEEch------
Confidence 589999999999887742 334678999999999999999998765 22 23344321
Q ss_pred HHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc----------------ccccc--CCCCCC
Q 003753 198 KIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI----------------ELSEA--GVPVQN 259 (798)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~----------------~~~~~--~~p~~~ 259 (798)
+ +...+ ...........+.....+++.+|+||+++... .+... ......
T Consensus 273 ~----l~~~~---------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~ 339 (489)
T 3hu3_A 273 E----IMSKL---------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (489)
T ss_dssp H----HHTSC---------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred H----hhhhh---------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence 1 11110 11122233334444556678899999985321 01111 111234
Q ss_pred CcEEEEeCCchHH-----hhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCC
Q 003753 260 ASKIVFTTIFEEV-----CSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGL 325 (798)
Q Consensus 260 gs~iivTTR~~~v-----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 325 (798)
+..||.||....- .........+.+...+.++-.+++..++.......... ..++++.+.|.
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~ 406 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGH 406 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTC
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCC
Confidence 4566666665432 11112234688899999999999998876543332223 34566666664
No 214
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.58 E-value=0.0023 Score=64.14 Aligned_cols=170 Identities=15% Similarity=0.164 Sum_probs=91.4
Q ss_pred cccchhHHHHHHHHHhh---c---------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHH
Q 003753 131 NIVGIESRLSEVWRYIE---D---------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEK 198 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 198 (798)
+++|.+..++++.+.+. . ...+-+.|+|++|+||||+|+.+++.. ...| +.+..+.-.+
T Consensus 13 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 13 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTT---
T ss_pred HhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHH---
Confidence 68999988887766542 1 123458899999999999999999876 2222 3333222100
Q ss_pred HHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc----------------cccc-----CCCC
Q 003753 199 IQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE----------------LSEA-----GVPV 257 (798)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~----------------~~~~-----~~p~ 257 (798)
. +...........+.......+.++++|+++.... +..+ ....
T Consensus 84 -----------~-----~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 84 -----------M-----FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp -----------S-----CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred -----------H-----hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc
Confidence 0 0112223333334444455678999999853210 0001 0112
Q ss_pred CCCcEEEEeCCchHHh-hhc----CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCC-CchHH
Q 003753 258 QNASKIVFTTIFEEVC-SSM----SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGG-LPLAL 329 (798)
Q Consensus 258 ~~gs~iivTTR~~~v~-~~~----~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai 329 (798)
..+..||.||...+.. ... .....+.++..+.++-.++++..+.......... ...++..+.| .+--|
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl 221 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADL 221 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHH
Confidence 3445667677654321 111 1234567777788887788877654332221111 2345666666 44333
No 215
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00034 Score=75.04 Aligned_cols=168 Identities=18% Similarity=0.258 Sum_probs=97.8
Q ss_pred CcccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCH
Q 003753 130 NNIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNI 196 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 196 (798)
.++.|-++.+++|.+.+.- ...+-|.++|++|+|||+||+++++.. ... .+.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhcc-
Confidence 4678999988888776621 235789999999999999999999987 222 23444333211
Q ss_pred HHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc----------------cccc-----CC
Q 003753 197 EKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE----------------LSEA-----GV 255 (798)
Q Consensus 197 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~----------------~~~~-----~~ 255 (798)
.+...............-...+++|++|+++.... +..+ ++
T Consensus 254 ------------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 254 ------------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp ------------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred ------------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 01111222222222233345789999999875310 0011 11
Q ss_pred CCCCCcEEEEeCCchHHhhh--c---CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc
Q 003753 256 PVQNASKIVFTTIFEEVCSS--M---SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP 326 (798)
Q Consensus 256 p~~~gs~iivTTR~~~v~~~--~---~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 326 (798)
....+..||.||...+.... . .-...+.++.-+.++-.++|+.++.........+ ...+++.+.|.-
T Consensus 316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 23345567777765543211 1 1234678888888888888887765433222233 345667777654
No 216
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.57 E-value=0.00069 Score=79.66 Aligned_cols=153 Identities=15% Similarity=0.178 Sum_probs=92.1
Q ss_pred CcccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhc---CCCCeEEEE-EcCCccCHHHHHHHHHH
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMS---HKFGAVIMV-KASTELNIEKIQDVIRS 205 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv-~vs~~~~~~~~~~~i~~ 205 (798)
..++||+.+++++++.|......-+.|+|.+|+||||+|+.+++...... ...+..+|. ..+.- .
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------~----- 254 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------L----- 254 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------h-----
Confidence 36899999999999999776666788999999999999999988763210 012333332 11110 0
Q ss_pred HcCCCCCCCccccCCHHHHHHHHHHHhc-CCcEEEEEecccCcc----------cccccCCC--CCCCcEEEEeCCchHH
Q 003753 206 RLGIDPDGDKWKNRDDQGRAAEIFRRLS-NKKFALLLDDLRERI----------ELSEAGVP--VQNASKIVFTTIFEEV 272 (798)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~r~LlVlDdv~~~~----------~~~~~~~p--~~~gs~iivTTR~~~v 272 (798)
.+.. .....+.....+.+.+. .++.+|++|++.... +......+ ...+.++|.+|...+.
T Consensus 255 -~~~~------~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~ 327 (758)
T 1r6b_X 255 -AGTK------YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_dssp -CCCC------CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHH
T ss_pred -cccc------ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHH
Confidence 0000 12234444444444444 367899999997541 11122223 3445667777665543
Q ss_pred hhhcC-------CCcceeccCCChHHHHHHHHHhc
Q 003753 273 CSSMS-------VDWRFKVDYLPQEEAWNLFRLKV 300 (798)
Q Consensus 273 ~~~~~-------~~~~~~l~~L~~~~a~~Lf~~~~ 300 (798)
..... -...+.++..+.++..+++...+
T Consensus 328 ~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 21111 11357889999999988887654
No 217
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.52 E-value=0.00076 Score=69.31 Aligned_cols=143 Identities=16% Similarity=0.152 Sum_probs=87.4
Q ss_pred chhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhc-CCCCeEEEEEcCC-ccCHHHHHHHHHHHcCCCC
Q 003753 134 GIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMS-HKFGAVIMVKAST-ELNIEKIQDVIRSRLGIDP 211 (798)
Q Consensus 134 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~ 211 (798)
|-++.++.+.+.+..+..+...++|+.|+||||+|+.+.+...... .+.+. .++..+. ...++++ +++.+.+...+
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 4456677788888776678999999999999999999987531111 23333 5555443 3334333 33444443222
Q ss_pred CCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc--c---cccc-CCCCCCCcEEEEeCCch-HHhhhcCCCcceec
Q 003753 212 DGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI--E---LSEA-GVPVQNASKIVFTTIFE-EVCSSMSVDWRFKV 284 (798)
Q Consensus 212 ~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~--~---~~~~-~~p~~~gs~iivTTR~~-~v~~~~~~~~~~~l 284 (798)
..+++-++|+|+++... . +.+. .- ....+.+|++|.+. .+....... .+++
T Consensus 79 --------------------~~~~~kvviIdead~lt~~a~naLLk~LEe-p~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 79 --------------------ELYTRKYVIVHDCERMTQQAANAFLKALEE-PPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp --------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHS-CCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred --------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhC-CCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 02457789999998653 1 1111 11 23456666655443 443333344 8999
Q ss_pred cCCChHHHHHHHHHhc
Q 003753 285 DYLPQEEAWNLFRLKV 300 (798)
Q Consensus 285 ~~L~~~~a~~Lf~~~~ 300 (798)
.++++++..+.+.+.+
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999988776
No 218
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.52 E-value=7.1e-05 Score=75.97 Aligned_cols=45 Identities=27% Similarity=0.263 Sum_probs=35.3
Q ss_pred cccchhHHHHHHHHHhhc------------CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIED------------DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+++|.+..++++.+.+.. ...+-+.|+|++|+|||++|+.+++..
T Consensus 12 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 12 DMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 689998888877776531 112347899999999999999999876
No 219
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00029 Score=75.52 Aligned_cols=167 Identities=13% Similarity=0.194 Sum_probs=96.1
Q ss_pred CcccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCH
Q 003753 130 NNIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNI 196 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 196 (798)
.++.|-++.+++|.+.+.. ...+-|.++|++|+|||.||+++++.. .. ..+.+..+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~---~f~~v~~s~l~-- 252 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NA---TFLKLAAPQLV-- 252 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TC---EEEEEEGGGGC--
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CC---CEEEEehhhhh--
Confidence 4688999999998876521 235789999999999999999999987 22 23344433211
Q ss_pred HHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHH-HhcCCcEEEEEecccCcc------------cc----ccc-----C
Q 003753 197 EKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFR-RLSNKKFALLLDDLRERI------------EL----SEA-----G 254 (798)
Q Consensus 197 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVlDdv~~~~------------~~----~~~-----~ 254 (798)
.. +... .+.....+.. .-...+++|++|+++... .. ..+ +
T Consensus 253 ------------~~-----~vGe-se~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg 314 (434)
T 4b4t_M 253 ------------QM-----YIGE-GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG 314 (434)
T ss_dssp ------------SS-----CSSH-HHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred ------------hc-----ccch-HHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc
Confidence 00 1111 1222222222 223468999999986421 00 001 1
Q ss_pred CCCCCCcEEEEeCCchHHhh-hc----CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc
Q 003753 255 VPVQNASKIVFTTIFEEVCS-SM----SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP 326 (798)
Q Consensus 255 ~p~~~gs~iivTTR~~~v~~-~~----~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 326 (798)
+....+..||.||...+... .+ .-...+.++.-+.++-.++|+.++.........+ ...|++.+.|.-
T Consensus 315 ~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 315 FSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp SCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred cCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 11334445666776554321 11 1334678888888888888877664433222223 355677777754
No 220
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.0007 Score=71.60 Aligned_cols=167 Identities=19% Similarity=0.247 Sum_probs=96.1
Q ss_pred CcccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCH
Q 003753 130 NNIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNI 196 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 196 (798)
.++.|.++.+++|.+.+.- ...+-|.++|++|+|||.||+++++.. ... .+.+..+.-
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~---fi~v~~s~l--- 252 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SAT---FLRIVGSEL--- 252 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCE---EEEEESGGG---
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCC---EEEEEHHHh---
Confidence 4677999988888776621 235779999999999999999999987 222 233333221
Q ss_pred HHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHH-HhcCCcEEEEEecccCccc----------------cccc-----C
Q 003753 197 EKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFR-RLSNKKFALLLDDLRERIE----------------LSEA-----G 254 (798)
Q Consensus 197 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVlDdv~~~~~----------------~~~~-----~ 254 (798)
... +.. +.+.....+.. .-...+++|++|+++.... +..+ +
T Consensus 253 -----------~sk-----~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 253 -----------IQK-----YLG-DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp -----------CCS-----SSS-HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred -----------hhc-----cCc-hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 000 111 12222233322 3345789999999875310 0001 1
Q ss_pred CCCCCCcEEEEeCCchHHhh-hc----CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc
Q 003753 255 VPVQNASKIVFTTIFEEVCS-SM----SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP 326 (798)
Q Consensus 255 ~p~~~gs~iivTTR~~~v~~-~~----~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 326 (798)
+....+..||.||...+... .+ ..+..+.++.-+.++-.++|+.++.......+.+ ...|++.+.|.-
T Consensus 316 ~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 316 FDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp CCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred cCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 11234445666776554421 11 1234577888888888889988775543333333 345667776654
No 221
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.45 E-value=0.0017 Score=67.93 Aligned_cols=166 Identities=16% Similarity=0.213 Sum_probs=91.0
Q ss_pred cccchhHHHHHHHHHhhc-----CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHH
Q 003753 131 NIVGIESRLSEVWRYIED-----DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRS 205 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 205 (798)
.++|.+..++.+...+.. .....+.++|++|+||||||+.+++.. ...|. ....+-.....
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~---~~sg~~~~~~~-------- 91 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIH---VTSGPVLVKQG-------- 91 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEE---EEETTTCCSHH--------
T ss_pred HccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEE---EEechHhcCHH--------
Confidence 688988888887766643 234679999999999999999999876 22211 11111101111
Q ss_pred HcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc-cc--------ccCCC----CC----------CCcE
Q 003753 206 RLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE-LS--------EAGVP----VQ----------NASK 262 (798)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-~~--------~~~~p----~~----------~gs~ 262 (798)
+.. .+...+. ++-++++|++..... .. ..... .+ ....
T Consensus 92 -----------------~l~-~~~~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 92 -----------------DMA-AILTSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp -----------------HHH-HHHHHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred -----------------HHH-HHHHHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 111 1111122 334666777654310 00 00000 00 0112
Q ss_pred EE-EeCCchHHhhhc--CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003753 263 IV-FTTIFEEVCSSM--SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTI 332 (798)
Q Consensus 263 ii-vTTR~~~v~~~~--~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 332 (798)
++ .|++...+...+ .....+.+++.+.++-.+++++.+.......+ .+.+..|++.+.|.|-.+..+
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~---~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIE---DAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHTSTTCHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHhcCCChHHHHHH
Confidence 22 355543332111 12235789999999999999887643222212 456889999999999655443
No 222
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00089 Score=71.65 Aligned_cols=168 Identities=18% Similarity=0.234 Sum_probs=92.7
Q ss_pred CcccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCH
Q 003753 130 NNIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNI 196 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 196 (798)
.++.|-++.+++|.+.+.- ...+-|.++|++|+|||+||+++++.. .. ..+.+..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~---~~~~v~~~~l~~- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KA---AFIRVNGSEFVH- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TC---EEEEEEGGGTCC-
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CC---CeEEEecchhhc-
Confidence 4688999999988876621 235679999999999999999999987 22 234444433211
Q ss_pred HHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc----------c------cccc-----CC
Q 003753 197 EKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI----------E------LSEA-----GV 255 (798)
Q Consensus 197 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~----------~------~~~~-----~~ 255 (798)
.+.......+...+...-...++++++|+++... + +..+ ++
T Consensus 245 ------------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~ 306 (428)
T 4b4t_K 245 ------------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF 306 (428)
T ss_dssp ------------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred ------------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence 0111122222222223334578999999986421 0 0011 11
Q ss_pred CCCCCcEEEEeCCchHH-----hhhcCCCcceeccCCCh-HHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc
Q 003753 256 PVQNASKIVFTTIFEEV-----CSSMSVDWRFKVDYLPQ-EEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP 326 (798)
Q Consensus 256 p~~~gs~iivTTR~~~v-----~~~~~~~~~~~l~~L~~-~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 326 (798)
....+..||.||...+. .+.......+.++.+++ ++-..+|+.++.........+ ...+++.+.|.-
T Consensus 307 ~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 307 DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 13345566667764432 22112234577766654 444556666654433222223 355667777654
No 223
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.42 E-value=6.1e-05 Score=68.60 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=35.3
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcC
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAS 191 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs 191 (798)
.++|.+... +..|.+-....++|+|..|+|||||++.+++.... ..+ .++++...
T Consensus 19 f~~g~n~~~---~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~-~~~~~~~~ 73 (149)
T 2kjq_A 19 FLGTENAEL---VYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQALE--AGK-NAAYIDAA 73 (149)
T ss_dssp CCSCCTHHH---HHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHHT--TTC-CEEEEETT
T ss_pred cCcCccHHH---HHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHHh--cCC-cEEEEcHH
Confidence 344555433 33333224568999999999999999999998732 222 25666544
No 224
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.41 E-value=0.0015 Score=67.45 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=38.1
Q ss_pred cccchhHHHHHHHHHhhc--------------CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIED--------------DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++|.+..++.+...+.. .....+.++|.+|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999887743 234578899999999999999998876
No 225
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.38 E-value=0.0013 Score=71.72 Aligned_cols=167 Identities=15% Similarity=0.163 Sum_probs=95.6
Q ss_pred cccchhHHHHHHHHHhh---c---------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHH
Q 003753 131 NIVGIESRLSEVWRYIE---D---------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEK 198 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 198 (798)
+++|.++.++++.+.+. . .-.+-+.|+|++|+|||+||+.+++.. ...| +.++.+.-...
T Consensus 17 di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 17 DVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC--
T ss_pred HhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH--
Confidence 68999988877766552 1 113458899999999999999999876 2222 33443322110
Q ss_pred HHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc----------------ccccC-----CCC
Q 003753 199 IQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE----------------LSEAG-----VPV 257 (798)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~----------------~~~~~-----~p~ 257 (798)
. ...........+.....+.+.+|+||+++.... +..+. +..
T Consensus 89 ------------~-----~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 89 ------------F-----VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp ------------C-----TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred ------------H-----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 0 111112222334444556789999999965310 11110 112
Q ss_pred CCCcEEEEeCCchHHhh-h-c---CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc
Q 003753 258 QNASKIVFTTIFEEVCS-S-M---SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP 326 (798)
Q Consensus 258 ~~gs~iivTTR~~~v~~-~-~---~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 326 (798)
..+..||.||...+... . . .-...+.++..+.++-.++++.++.........+ ...+++.+.|..
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 34556777776654421 1 1 1233677888888887788877765433222222 344777888877
No 226
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.36 E-value=0.0007 Score=70.18 Aligned_cols=60 Identities=25% Similarity=0.309 Sum_probs=44.7
Q ss_pred cccchhHHHHHHHHHhhcC---------CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc
Q 003753 131 NIVGIESRLSEVWRYIEDD---------GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE 193 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 193 (798)
.++|.+..++.+...+... ....+.++|++|+|||++|+.+++... ..-...+.+.++..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRIDMTEY 86 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEEGGGC
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEeecccc
Confidence 5889999999998888542 135899999999999999999998762 22223456665543
No 227
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.95 E-value=0.011 Score=64.90 Aligned_cols=163 Identities=15% Similarity=0.159 Sum_probs=89.9
Q ss_pred cccchhHHHHHHHHHh---hcC---------CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHH
Q 003753 131 NIVGIESRLSEVWRYI---EDD---------GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEK 198 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 198 (798)
+++|.++.++++.+.. ... -.+-+.|+|++|+||||||+.++... . ...+.++.+.-.+
T Consensus 32 dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~---~~~i~i~g~~~~~--- 102 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---R---VPFITASGSDFVE--- 102 (499)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---T---CCEEEEEGGGGTS---
T ss_pred HcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---C---CCEEEEehhHHHH---
Confidence 6899998877776654 221 12348999999999999999999876 2 1234444332110
Q ss_pred HHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcC----CcEEEEEecccCccc----------------ccccC--CC
Q 003753 199 IQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSN----KKFALLLDDLRERIE----------------LSEAG--VP 256 (798)
Q Consensus 199 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~----~r~LlVlDdv~~~~~----------------~~~~~--~p 256 (798)
.........+...++. .+.++++|+++.... +..+. +.
T Consensus 103 --------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 103 --------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp --------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGG
T ss_pred --------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhc
Confidence 0011122233333332 357999999864310 01110 11
Q ss_pred ---CCCCcEEEEeCCchHHhhh--c---CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCc
Q 003753 257 ---VQNASKIVFTTIFEEVCSS--M---SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLP 326 (798)
Q Consensus 257 ---~~~gs~iivTTR~~~v~~~--~---~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 326 (798)
...+..++.||...++... . .....+.++..+.++-.++++.++.......... ...|++.+.|..
T Consensus 163 g~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 163 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp GCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred ccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 1233455666766655221 1 1234678888888888888887764322221222 344666666665
No 228
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.94 E-value=0.0049 Score=71.16 Aligned_cols=168 Identities=15% Similarity=0.213 Sum_probs=97.6
Q ss_pred cccchhHHHHHHHHHhh----c---------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHH
Q 003753 131 NIVGIESRLSEVWRYIE----D---------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIE 197 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 197 (798)
++.|.++.+++|.+.+. . ..++-|.++|++|+|||+||+.+++.. ..+ .+.|+.+.
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~~----- 273 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPE----- 273 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHHH-----
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhHH-----
Confidence 56788888877777652 1 235679999999999999999999876 222 34443221
Q ss_pred HHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCcc--------ccc-----cc-----CCCCCC
Q 003753 198 KIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERI--------ELS-----EA-----GVPVQN 259 (798)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~--------~~~-----~~-----~~p~~~ 259 (798)
+. +. +.......+...+.......+.+|++|+++... +.. .+ ++....
T Consensus 274 -----l~---sk------~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~ 339 (806)
T 3cf2_A 274 -----IM---SK------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp -----HH---SS------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG
T ss_pred -----hh---cc------cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC
Confidence 11 10 112222333333444445678999999987531 000 01 011223
Q ss_pred CcEEEEeCCchHHh-hhc----CCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCch
Q 003753 260 ASKIVFTTIFEEVC-SSM----SVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPL 327 (798)
Q Consensus 260 gs~iivTTR~~~v~-~~~----~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 327 (798)
+..||.||...+.. ..+ .-...++++..+.++-.++|+.+........+.+ ...|++++.|.--
T Consensus 340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfsg 408 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVG 408 (806)
T ss_dssp CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCCH
T ss_pred CEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCCH
Confidence 44556666544321 111 1335678888888888899988775543333333 4567778877753
No 229
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.91 E-value=0.0081 Score=62.65 Aligned_cols=89 Identities=15% Similarity=0.160 Sum_probs=59.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCcc-ccCCHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKW-KNRDDQGRAAEIF 229 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~l~ 229 (798)
-.++.|.|.+|+||||||.+++..... .-..++|++....++.. .+++++...+.... ...+.++....+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 469999999999999999999887632 22357888877776654 55666665421111 2344555555565
Q ss_pred HHhc-CCcEEEEEecccCc
Q 003753 230 RRLS-NKKFALLLDDLRER 247 (798)
Q Consensus 230 ~~l~-~~r~LlVlDdv~~~ 247 (798)
..++ .+.-++|+|.+...
T Consensus 133 ~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHHTSCCSEEEEECTTTC
T ss_pred HHhhhcCCCeEEehHhhhh
Confidence 5554 45568999997654
No 230
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.91 E-value=0.0022 Score=66.05 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=37.8
Q ss_pred cccchhHHHHHHHHHhhc--CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIED--DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++|+...+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 589999999999888854 334567899999999999999998865
No 231
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.88 E-value=0.008 Score=61.42 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=23.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++.+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678899999999999999999987
No 232
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.88 E-value=0.021 Score=57.55 Aligned_cols=145 Identities=17% Similarity=0.172 Sum_probs=80.5
Q ss_pred cccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHH
Q 003753 131 NIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIE 197 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 197 (798)
++.|-++.+++|.+.+.. .-.+-+.++|++|+||||||+.++.... . ..+++..+.-.+.
T Consensus 11 di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~---~---~~i~i~g~~l~~~- 83 (274)
T 2x8a_A 11 DIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG---L---NFISVKGPELLNM- 83 (274)
T ss_dssp -CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT---C---EEEEEETTTTCSS-
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC---C---CEEEEEcHHHHhh-
Confidence 678888888888775411 1112399999999999999999988751 1 2444443221100
Q ss_pred HHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHH-hcCCcEEEEEecccCccc---------cccc--CCC-------CC
Q 003753 198 KIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRR-LSNKKFALLLDDLRERIE---------LSEA--GVP-------VQ 258 (798)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVlDdv~~~~~---------~~~~--~~p-------~~ 258 (798)
........+..+.+. -...+.++++|+++.... ..+. .++ ..
T Consensus 84 -------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~ 144 (274)
T 2x8a_A 84 -------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR 144 (274)
T ss_dssp -------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST
T ss_pred -------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc
Confidence 000011122222222 234678999999875310 0000 000 12
Q ss_pred CCcEEEEeCCchHHhhh-----cCCCcceeccCCChHHHHHHHHHhcc
Q 003753 259 NASKIVFTTIFEEVCSS-----MSVDWRFKVDYLPQEEAWNLFRLKVT 301 (798)
Q Consensus 259 ~gs~iivTTR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~~~ 301 (798)
...-++.+|...++... ..-...+.++..+.++-.++|+....
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 23345566766655221 12345678888888888888887764
No 233
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.82 E-value=0.015 Score=58.01 Aligned_cols=45 Identities=27% Similarity=0.343 Sum_probs=33.0
Q ss_pred cccchhHHHHHHHHHhh---c---------CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIE---D---------DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+++|.+..+.++.+... . .-.+-+.|+|++|+||||||+.+++..
T Consensus 17 ~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 17 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 68898877666655431 1 011238999999999999999999876
No 234
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.75 E-value=0.0051 Score=72.20 Aligned_cols=149 Identities=13% Similarity=0.205 Sum_probs=85.2
Q ss_pred CcccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCH
Q 003753 130 NNIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNI 196 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 196 (798)
.+++|.+..+++|.+++.. .....|.|+|.+|+||||||+.+++.. ...| +.++.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGPE---- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEE---EEEEHHH----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcE---EEEEchH----
Confidence 3688999888888887732 234579999999999999999998765 2222 3343211
Q ss_pred HHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc----------------cccc--CCCCC
Q 003753 197 EKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE----------------LSEA--GVPVQ 258 (798)
Q Consensus 197 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~----------------~~~~--~~p~~ 258 (798)
+ .... ...........++........++++|+++.... +... +....
T Consensus 274 ------l----~~~~-----~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~ 338 (806)
T 1ypw_A 274 ------I----MSKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp ------H----SSSS-----TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTT
T ss_pred ------h----hhhh-----hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccc
Confidence 1 0000 111122223333344445788999999854310 1111 11123
Q ss_pred CCcEEEEeCCchHHh-hhc----CCCcceeccCCChHHHHHHHHHhccCc
Q 003753 259 NASKIVFTTIFEEVC-SSM----SVDWRFKVDYLPQEEAWNLFRLKVTDE 303 (798)
Q Consensus 259 ~gs~iivTTR~~~v~-~~~----~~~~~~~l~~L~~~~a~~Lf~~~~~~~ 303 (798)
.+..+|.||...+-. ..+ .....+.+...+.++-.+++...+...
T Consensus 339 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~ 388 (806)
T 1ypw_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM 388 (806)
T ss_dssp SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTS
T ss_pred ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcC
Confidence 344566666554221 111 122456788888899999998776543
No 235
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.69 E-value=0.0053 Score=71.99 Aligned_cols=59 Identities=19% Similarity=0.319 Sum_probs=43.8
Q ss_pred cccchhHHHHHHHHHhhc---------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCC
Q 003753 131 NIVGIESRLSEVWRYIED---------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAST 192 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 192 (798)
.++|.+..++.+.+.+.. .....+.++|++|+|||++|+.+++... ..-...+.++++.
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSE 559 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGG
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechh
Confidence 689999999999888843 1123799999999999999999988762 2223445666554
No 236
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.68 E-value=0.0012 Score=59.67 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=35.9
Q ss_pred cccchhHHHHHHHHHhhc--CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIED--DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++|+...++++.+.+.. ....-|.|+|..|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 588999999999988843 233457899999999999999998865
No 237
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.63 E-value=0.023 Score=57.55 Aligned_cols=46 Identities=26% Similarity=0.341 Sum_probs=33.9
Q ss_pred CcccchhHHHHHHHHHhh---c---------CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 130 NNIVGIESRLSEVWRYIE---D---------DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.+++|.+..++++.+... . .-.+-+.|+|++|+||||||+.++...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 368898877776655442 1 011238999999999999999999876
No 238
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.57 E-value=0.011 Score=66.07 Aligned_cols=45 Identities=27% Similarity=0.425 Sum_probs=35.9
Q ss_pred cccchhHHHHHHHHHhh------cCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIE------DDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+++|.+...+.+.+.+. +....++.++|++|+||||||+.++...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 57898888877766542 1235689999999999999999998876
No 239
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.55 E-value=0.0064 Score=59.10 Aligned_cols=90 Identities=14% Similarity=0.247 Sum_probs=53.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCC--------CccccCCHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDG--------DKWKNRDDQ 222 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--------~~~~~~~~~ 222 (798)
-.++.|+|.+|+||||||..++. . . . ..++|++....++...+.. +.+.++...+. ......+..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~-~--~--~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-L-S--G--KKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-H-H--C--SEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-H-c--C--CcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 46999999999999999999987 2 1 1 4688888776556555443 33333321100 000111122
Q ss_pred HHHHHHHHHhcCCcEEEEEecccCc
Q 003753 223 GRAAEIFRRLSNKKFALLLDDLRER 247 (798)
Q Consensus 223 ~~~~~l~~~l~~~r~LlVlDdv~~~ 247 (798)
.....++..+..+.-++|+|.+...
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 3444444555445778999987643
No 240
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.52 E-value=0.0023 Score=65.11 Aligned_cols=69 Identities=19% Similarity=0.302 Sum_probs=46.4
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEc--CCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKA--STELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF 229 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 229 (798)
+++.|+|++|+||||||.+++... . ..+.|++. .+..+ . ...+.+.....+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~-G-----~~VlyIs~~~eE~v~---------------~-----~~~~le~~l~~i~ 177 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEAL-G-----GKDKYATVRFGEPLS---------------G-----YNTDFNVFVDDIA 177 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHH-H-----TTSCCEEEEBSCSST---------------T-----CBCCHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhC-C-----CCEEEEEecchhhhh---------------h-----hhcCHHHHHHHHH
Confidence 577899999999999999998752 1 12345555 22210 0 1134566666677
Q ss_pred HHhcCCcEEEEEecccCc
Q 003753 230 RRLSNKKFALLLDDLRER 247 (798)
Q Consensus 230 ~~l~~~r~LlVlDdv~~~ 247 (798)
+.+.+.+ ++|+|++...
T Consensus 178 ~~l~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 178 RAMLQHR-VIVIDSLKNV 194 (331)
T ss_dssp HHHHHCS-EEEEECCTTT
T ss_pred HHHhhCC-EEEEeccccc
Confidence 7776666 9999998764
No 241
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.51 E-value=0.0088 Score=63.73 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=68.8
Q ss_pred CCCCcceeeeecccccccccHHHHhcCCceeEEeCCCCccccccc-ccccCCCCCCEEEcCCCCCcccC-ccccCCCccc
Q 003753 513 PCSPRLLTLLVRYTMIKEFENKFFKSMYALRVLDSSQNAKLSKLH-VGEGELIDLQYLNLSNTNICELP-IGIKSCTHLR 590 (798)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~Ls~~~i~~lp-~~i~~l~~L~ 590 (798)
.++..|+.+.+..+ ++.+....|.++.+|+.+.+..+ ++.++ ..+..+.+|+.+.+.++.++.++ ..|.++.+|+
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 56667777777654 56666666777777777777543 55554 34566777777777777777664 3566777777
Q ss_pred EEeCCCCCCcccccchhhcCCCCCcccccc
Q 003753 591 TLLLDGTENLKAIPVGMLSSLLSLRVFSWV 620 (798)
Q Consensus 591 ~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~ 620 (798)
.+.+..+ ++.++...|.++++|+.+.+.
T Consensus 314 ~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 314 SVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred EEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 7777543 666766667777777777664
No 242
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.50 E-value=0.019 Score=60.02 Aligned_cols=89 Identities=17% Similarity=0.198 Sum_probs=57.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCc-cccCCHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDK-WKNRDDQGRAAEIF 229 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~ 229 (798)
-.++.|.|.+|+||||||.+++..... .=..++|++....++.. .++.++...+... ....+.++....+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 469999999999999999999876622 22468899988776643 3556665432111 11234455555555
Q ss_pred HHhcC-CcEEEEEecccCc
Q 003753 230 RRLSN-KKFALLLDDLRER 247 (798)
Q Consensus 230 ~~l~~-~r~LlVlDdv~~~ 247 (798)
...+. +.-+||+|.+...
T Consensus 133 ~l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHHTTTCCSEEEEECGGGC
T ss_pred HHHhcCCCCEEEEcChHhh
Confidence 44443 4569999997653
No 243
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.45 E-value=0.028 Score=59.03 Aligned_cols=89 Identities=16% Similarity=0.169 Sum_probs=58.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCc-cccCCHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDK-WKNRDDQGRAAEIF 229 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~ 229 (798)
-.++.|.|.+|+||||||.+++..... .-..++|++....++.. .++.++...+.-. ....+.++....+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 458999999999999999998877632 22468999988776643 2455665432100 11234566666666
Q ss_pred HHhcC-CcEEEEEecccCc
Q 003753 230 RRLSN-KKFALLLDDLRER 247 (798)
Q Consensus 230 ~~l~~-~r~LlVlDdv~~~ 247 (798)
...+. +.-+||+|.+...
T Consensus 146 ~l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHHTTTCCSEEEEECTTTC
T ss_pred HHHhcCCCCEEEEeChHHh
Confidence 65554 4558999997643
No 244
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.42 E-value=0.019 Score=60.15 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=56.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCc-cccCCHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDK-WKNRDDQGRAAEI 228 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l 228 (798)
.-+++.|.|.+|+||||||.+++..... .-..++|++....++.. .+..++...+.-. ....+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 3469999999999999999998877632 22368899988777643 2455665432110 0122344444444
Q ss_pred HHHhc-CCcEEEEEecccCc
Q 003753 229 FRRLS-NKKFALLLDDLRER 247 (798)
Q Consensus 229 ~~~l~-~~r~LlVlDdv~~~ 247 (798)
....+ .+.-+||+|.+...
T Consensus 134 ~~l~~~~~~~lVVIDsl~~l 153 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAAL 153 (356)
T ss_dssp HHHHHHTCCSEEEEECGGGC
T ss_pred HHHHhccCCCEEEEcCHHHh
Confidence 44433 44558999997643
No 245
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.37 E-value=0.012 Score=59.45 Aligned_cols=90 Identities=11% Similarity=0.118 Sum_probs=58.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCcc-ccCCHHHH-HHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKW-KNRDDQGR-AAEIF 229 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~-~~~l~ 229 (798)
.++-|.|.+|+||||||.+++..... ...=..++||+....++.. .+++++...+.-.. ...+.++. ...+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 37899999999999999998777632 1113568999988887753 36778776531111 12344444 33222
Q ss_pred HH--h-cCCcEEEEEecccCc
Q 003753 230 RR--L-SNKKFALLLDDLRER 247 (798)
Q Consensus 230 ~~--l-~~~r~LlVlDdv~~~ 247 (798)
.. + .++.-++|+|-+...
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHhhccCceEEEEeccccc
Confidence 22 3 346789999998765
No 246
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.32 E-value=0.0078 Score=62.53 Aligned_cols=95 Identities=17% Similarity=0.263 Sum_probs=57.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhc---CCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCC----Cc-cccCCHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMS---HKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDG----DK-WKNRDDQ 222 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~-~~~~~~~ 222 (798)
-.++.|+|.+|+||||||.+++....... ..-..++|++....++.+.+.+ +++.++...+. -. ....+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 46999999999999999999887641100 0135789999888877776653 45666553210 00 0112222
Q ss_pred ---HHHHHHHHHhc--CCcEEEEEecccC
Q 003753 223 ---GRAAEIFRRLS--NKKFALLLDDLRE 246 (798)
Q Consensus 223 ---~~~~~l~~~l~--~~r~LlVlDdv~~ 246 (798)
+....+...++ .+.-+||+|.+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 23344444543 3556888887654
No 247
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.14 E-value=0.011 Score=64.80 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=36.5
Q ss_pred CcccchhHHHHHHHHHh---hcC--CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 130 NNIVGIESRLSEVWRYI---EDD--GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L---~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..++|.+..++.+..++ ..+ ..+-+.++|++|+|||++|+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 36999999888765554 332 23578899999999999999999987
No 248
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.08 E-value=0.0017 Score=58.53 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=33.8
Q ss_pred cccchhHHHHHHHHHhhc--CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIED--DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++|++..++++.+.+.. ....-|.|+|..|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 578999999998888753 333457799999999999999886653
No 249
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.00 E-value=0.026 Score=58.94 Aligned_cols=96 Identities=17% Similarity=0.262 Sum_probs=57.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcC---CCCeEEEEEcCCccCHHHHHHHHHHHcCCCCC----C----Ccccc
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSH---KFGAVIMVKASTELNIEKIQDVIRSRLGIDPD----G----DKWKN 218 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----~----~~~~~ 218 (798)
.-.++.|+|.+|+||||||.+++........ .-..++|++....++...+.. +++.++.... . .....
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 3479999999999999999998876411000 235789999888777766553 4555554321 0 00011
Q ss_pred CCHHHHHHHHHHHhc---CCcEEEEEecccC
Q 003753 219 RDDQGRAAEIFRRLS---NKKFALLLDDLRE 246 (798)
Q Consensus 219 ~~~~~~~~~l~~~l~---~~r~LlVlDdv~~ 246 (798)
....+....+...++ .+.-+||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 111223333444443 4556888887764
No 250
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.99 E-value=0.015 Score=57.34 Aligned_cols=95 Identities=13% Similarity=0.179 Sum_probs=56.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcC----CCCeEEEEEcCCccCHHHHHHHHHHHcCCCCC----CCcc-ccCCH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSH----KFGAVIMVKASTELNIEKIQDVIRSRLGIDPD----GDKW-KNRDD 221 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----~~~~-~~~~~ 221 (798)
-.++.|+|.+|+|||||++.++..... .. .-..++|+.....++...+. .+++.++...+ .-.. ...+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~-~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQL-PIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTS-CGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhC-chhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 469999999999999999999875311 11 23578999877765555443 34555554320 0000 11222
Q ss_pred HH---HHHHHHHHhc-CCcEEEEEecccCc
Q 003753 222 QG---RAAEIFRRLS-NKKFALLLDDLRER 247 (798)
Q Consensus 222 ~~---~~~~l~~~l~-~~r~LlVlDdv~~~ 247 (798)
.+ ....+.+.+. .+.-++|+|++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 22 2233444443 46778899987653
No 251
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.99 E-value=0.0076 Score=62.03 Aligned_cols=41 Identities=29% Similarity=0.427 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHhhcC---CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 135 IESRLSEVWRYIEDD---GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 135 r~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+...++.+.+++... ....+.|+|..|+|||+||+.+++..
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 344555556666542 24688999999999999999999987
No 252
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.95 E-value=0.029 Score=60.06 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=23.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+|.++|.+|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998877
No 253
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.92 E-value=0.016 Score=67.99 Aligned_cols=56 Identities=20% Similarity=0.244 Sum_probs=42.2
Q ss_pred cccchhHHHHHHHHHhhc---------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCC
Q 003753 131 NIVGIESRLSEVWRYIED---------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAST 192 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 192 (798)
.++|.+..++.+...+.. .....+.++|++|+|||++|+.+++.. . ...+.++++.
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l---~---~~~~~i~~s~ 523 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---G---IELLRFDMSE 523 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH---T---CEEEEEEGGG
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh---c---CCEEEEechh
Confidence 588999999988887742 123479999999999999999998876 1 2345555554
No 254
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.89 E-value=0.009 Score=57.23 Aligned_cols=42 Identities=29% Similarity=0.483 Sum_probs=34.2
Q ss_pred chhHHHHHHHHHhhc---CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 134 GIESRLSEVWRYIED---DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 134 Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.|+..++++.+.+.. ....+|+|.|..|+||||+++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456677778777754 346799999999999999999998866
No 255
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.82 E-value=0.013 Score=60.78 Aligned_cols=95 Identities=17% Similarity=0.245 Sum_probs=57.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhc---------CC--C--CeEEEEEcCCccCHHHHHHHHHHHcCCCCCC---C
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMS---------HK--F--GAVIMVKASTELNIEKIQDVIRSRLGIDPDG---D 214 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~~--f--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~ 214 (798)
-.++.|+|.+|+||||||.+++....... .. . ..++|++....++.+.+.+ +++.++..... .
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 47999999999999999999887531000 11 1 4789999888877776664 45566543210 0
Q ss_pred --ccccCCHH---HHHHHHHHHhcC--CcEEEEEecccC
Q 003753 215 --KWKNRDDQ---GRAAEIFRRLSN--KKFALLLDDLRE 246 (798)
Q Consensus 215 --~~~~~~~~---~~~~~l~~~l~~--~r~LlVlDdv~~ 246 (798)
.....+.+ +....+...++. +.-+||+|.+..
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 00112222 233445555543 445788887653
No 256
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.82 E-value=0.011 Score=52.02 Aligned_cols=52 Identities=25% Similarity=0.326 Sum_probs=30.8
Q ss_pred EEeCCCCcccc--cccccccCCCCCCEEEcCCCCCcccCc-cccCCCcccEEeCCCCC
Q 003753 544 VLDSSQNAKLS--KLHVGEGELIDLQYLNLSNTNICELPI-GIKSCTHLRTLLLDGTE 598 (798)
Q Consensus 544 ~L~L~~~~~i~--~lp~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~l~~~~ 598 (798)
+++.+++ .++ .+|..+. .+|++|+|++|+|+.+|. .+..+++|++|+|++|.
T Consensus 12 ~v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSS-CCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCC-CCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5566666 666 6665432 256666666666666644 34556666666666654
No 257
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.76 E-value=0.021 Score=58.37 Aligned_cols=91 Identities=20% Similarity=0.238 Sum_probs=50.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCH--HHHHHHHHHHcCCCCCCCccccCCHHHH-HH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNI--EKIQDVIRSRLGIDPDGDKWKNRDDQGR-AA 226 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~ 226 (798)
...+++|+|.+|+||||++..++..... . -..+.++... .+.. .+-+...++..+.+.-.. ....+.... ..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~-g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~-~s~~~~~~v~~~ 177 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD--E-GKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISH-SEGADPAAVAFD 177 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH--T-TCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECC-STTCCHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh--c-CCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEec-CCccCHHHHHHH
Confidence 4579999999999999999999887732 2 2235555433 2222 222334555555432100 012233332 22
Q ss_pred HHHHHhcCCcEEEEEeccc
Q 003753 227 EIFRRLSNKKFALLLDDLR 245 (798)
Q Consensus 227 ~l~~~l~~~r~LlVlDdv~ 245 (798)
.+...+..+.-++|+|-.-
T Consensus 178 al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 178 AVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHHTTCSEEEEEECC
T ss_pred HHHHHHhcCCCEEEEECCC
Confidence 3445455555588888653
No 258
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.75 E-value=0.018 Score=68.31 Aligned_cols=59 Identities=25% Similarity=0.329 Sum_probs=42.8
Q ss_pred cccchhHHHHHHHHHhhcC---------CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCC
Q 003753 131 NIVGIESRLSEVWRYIEDD---------GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAST 192 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 192 (798)
.++|.+..++.+...+... ....+.|+|+.|+|||++|+.+.+... ..-...+.++++.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~---~~~~~~i~i~~~~ 626 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRIDMTE 626 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH---SSGGGEEEECTTT
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCCcEEEEechh
Confidence 4789999999988877431 125899999999999999999988762 1112345555554
No 259
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.74 E-value=0.0042 Score=60.22 Aligned_cols=114 Identities=13% Similarity=0.028 Sum_probs=63.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF 229 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 229 (798)
.-.++.|+|..|+||||++..+.++.. ..... ++.+....+. . ....|++.++...... ......+....+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~--~~g~k-Vli~~~~~d~--r-~~~~i~srlG~~~~~~--~~~~~~~i~~~i~ 82 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE--YADVK-YLVFKPKIDT--R-SIRNIQSRTGTSLPSV--EVESAPEILNYIM 82 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH--HTTCC-EEEEEECCCG--G-GCSSCCCCCCCSSCCE--EESSTHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH--hcCCE-EEEEEeccCc--h-HHHHHHHhcCCCcccc--ccCCHHHHHHHHH
Confidence 347899999999999999999888873 22233 3444333221 1 2234555555443211 1223344555555
Q ss_pred HHhcCCcE-EEEEecccCcc--cccccCCCCCCCcEEEEeCCchH
Q 003753 230 RRLSNKKF-ALLLDDLRERI--ELSEAGVPVQNASKIVFTTIFEE 271 (798)
Q Consensus 230 ~~l~~~r~-LlVlDdv~~~~--~~~~~~~p~~~gs~iivTTR~~~ 271 (798)
+.+.+.++ +||+|.+.... .++.+..-...|..||+|.++.+
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKN 127 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBC
T ss_pred HHhhCCCCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEecccc
Confidence 54444444 99999987532 11111000224788999988553
No 260
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.74 E-value=0.0091 Score=60.06 Aligned_cols=59 Identities=24% Similarity=0.330 Sum_probs=40.1
Q ss_pred cccchhHHHHHHHHHhhc--CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCC
Q 003753 131 NIVGIESRLSEVWRYIED--DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAST 192 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 192 (798)
.++|.+..+.++.+.+.. .....+.|+|..|+|||++|+.+++.... .. ...+.++++.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~--~~-~~~~~v~~~~ 67 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR--WQ-GPFISLNCAA 67 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTT--TT-SCEEEEEGGG
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCc--cC-CCeEEEecCC
Confidence 588999999988877743 23356789999999999999999887521 11 2345566554
No 261
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.73 E-value=0.048 Score=56.30 Aligned_cols=58 Identities=21% Similarity=0.325 Sum_probs=37.2
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc-cCHHHHHHHHHHHcCC
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE-LNIEKIQDVIRSRLGI 209 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~ 209 (798)
....+++|+|+.|+||||+++.++..... .. ..+.++...-. ....+-+....+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~-g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN--HG-FSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH--TT-CCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh--cC-CEEEEEeecccccchHHHHHHHHHHcCc
Confidence 34689999999999999999999887732 22 23444433221 2334445555666664
No 262
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.72 E-value=0.013 Score=60.71 Aligned_cols=45 Identities=9% Similarity=0.023 Sum_probs=31.5
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCcc
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTEL 194 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 194 (798)
..-..++|+|..|+|||||++.+.+........+++ +++-+++..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~ 216 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERP 216 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCCh
Confidence 445699999999999999999988776321223334 356666553
No 263
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.70 E-value=0.037 Score=59.18 Aligned_cols=92 Identities=22% Similarity=0.193 Sum_probs=48.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc-cCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE-LNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 228 (798)
...+|.++|.+|+||||++..++..... ... .+..++.... ....+.+....+..+.+.... ....+........
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~--~G~-kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~-~~~~dp~~i~~~a 171 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK--RGY-KVGLVAADVYRPAAYDQLLQLGNQIGVQVYGE-PNNQNPIEIAKKG 171 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH--TTC-CEEEEEECCSCHHHHHHHHHHHHTTTCCEECC-TTCSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCC-eEEEEecCccchhHHHHHHHHHHhcCCceeec-cccCCHHHHHHHH
Confidence 4689999999999999999999887732 222 3444443321 122333344445555432110 0122334433333
Q ss_pred HHHhc-CCcEEEEEeccc
Q 003753 229 FRRLS-NKKFALLLDDLR 245 (798)
Q Consensus 229 ~~~l~-~~r~LlVlDdv~ 245 (798)
...+. ...=++|+|-..
T Consensus 172 l~~a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 172 VDIFVKNKMDIIIVDTAG 189 (433)
T ss_dssp HHHTTTTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 33333 333355677654
No 264
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.62 E-value=0.041 Score=56.02 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=48.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc-cCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE-LNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 228 (798)
...+++|+|.+|+||||++..++..... ... ..+..+..... ....+.+....+..+.+.. ...+...+...+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~----~~~~~~~l~~al 177 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML-EKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLE----VCYTKEEFQQAK 177 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH-TTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC----BCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-hcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeE----ecCCHHHHHHHH
Confidence 3569999999999999999999887731 122 24555554332 2233334444444444431 112333333333
Q ss_pred HHHhcCCcEEEEEec
Q 003753 229 FRRLSNKKFALLLDD 243 (798)
Q Consensus 229 ~~~l~~~r~LlVlDd 243 (798)
. .+ .+.=++|+|-
T Consensus 178 ~-~~-~~~dlvIiDT 190 (296)
T 2px0_A 178 E-LF-SEYDHVFVDT 190 (296)
T ss_dssp H-HG-GGSSEEEEEC
T ss_pred H-Hh-cCCCEEEEeC
Confidence 3 33 3445788884
No 265
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.52 E-value=0.031 Score=54.62 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=34.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
-.+++|+|.+|+|||||++.++..... . -..++|+.... ....+...+. .++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~-~--~~~v~~~~~~~--~~~~~~~~~~-~~~~ 75 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLR-D--GDPCIYVTTEE--SRDSIIRQAK-QFNW 75 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHH-H--TCCEEEEESSS--CHHHHHHHHH-HTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH-C--CCeEEEEEccc--CHHHHHHHHH-Hhcc
Confidence 368999999999999999999876532 1 13466665443 3444444332 4443
No 266
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.48 E-value=0.013 Score=56.50 Aligned_cols=39 Identities=28% Similarity=0.439 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhc--CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 137 SRLSEVWRYIED--DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 137 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+.+++|.+.+.. ....+|+|+|..|+|||||++.+....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345556565542 456799999999999999999998877
No 267
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.48 E-value=0.041 Score=53.65 Aligned_cols=58 Identities=22% Similarity=0.286 Sum_probs=37.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhh--hcC-CCCeEEEEEcCCccCHHHHHHHHHHHcCC
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSD--MSH-KFGAVIMVKASTELNIEKIQDVIRSRLGI 209 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~-~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 209 (798)
-.+++|+|.+|+|||||++.++..... ... .-..++|+.-...+.... ...+.+..+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~ 85 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGL 85 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 469999999999999999999875411 011 234688887655444333 3344444443
No 268
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.20 E-value=0.14 Score=55.06 Aligned_cols=92 Identities=18% Similarity=0.243 Sum_probs=49.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc-cCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE-LNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 228 (798)
..++|.++|.+|+||||++..++..... +.. ..+..++.... ....+.+.......+.+.-... ...+........
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~-~~G-~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~-~~~dp~~i~~~~ 175 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE-KHK-KKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSD-VGQKPVDIVNAA 175 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHH-TSC-CCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCC-SSSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-hcC-CeEEEEecCCCCccHHHHHHhhcccCCeeEEeCC-CCCCHHHHHHHH
Confidence 4689999999999999999999888732 212 34455554432 2333333334444444321000 123445554444
Q ss_pred HHHhc-CCcEEEEEecc
Q 003753 229 FRRLS-NKKFALLLDDL 244 (798)
Q Consensus 229 ~~~l~-~~r~LlVlDdv 244 (798)
...++ ...=++|+|-.
T Consensus 176 l~~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 176 LKEAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHHHTTCSEEEEECC
T ss_pred HHHHHhCCCCEEEEECC
Confidence 44444 23336677764
No 269
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.18 E-value=0.028 Score=49.31 Aligned_cols=54 Identities=24% Similarity=0.455 Sum_probs=27.8
Q ss_pred EEEcCCCCCc--ccCccccCCCcccEEeCCCCCCcccccchhhcCCCCCccccccCCCC
Q 003753 568 YLNLSNTNIC--ELPIGIKSCTHLRTLLLDGTENLKAIPVGMLSSLLSLRVFSWVPTRY 624 (798)
Q Consensus 568 ~L~Ls~~~i~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 624 (798)
.++.++++++ .+|..+. .+|++|+|++|. +..+|.+++..+++|++|++.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 4455555554 5554322 245555555554 5555555555555555555555543
No 270
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.13 E-value=0.044 Score=58.69 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=45.8
Q ss_pred HHHHhhc-CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCcc-CHHHHHHHHHHH
Q 003753 142 VWRYIED-DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTEL-NIEKIQDVIRSR 206 (798)
Q Consensus 142 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~ 206 (798)
+++.|.. ..-..++|.|..|+|||+|+.++.+... +.+-+.++++-+++.. .+.++.+++.+.
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 3444432 3446899999999999999999988752 3455777888787765 467777777765
No 271
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.10 E-value=0.024 Score=55.26 Aligned_cols=40 Identities=23% Similarity=0.426 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 136 ESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 136 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+...+.+.+.+......+|+|+|.+|+|||||+.++....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4445555555555678899999999999999999998775
No 272
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.09 E-value=0.052 Score=58.36 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=61.4
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCcc-CHHHHHHHHHHHcCCCCC-----CCc----ccc
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTEL-NIEKIQDVIRSRLGIDPD-----GDK----WKN 218 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~-----~~~----~~~ 218 (798)
..-..++|.|..|+|||+|+.++.+... +.+-+.++++-+++.. .+.++..++.+.=..... ... ..+
T Consensus 163 gkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d 240 (498)
T 1fx0_B 163 RRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMN 240 (498)
T ss_dssp CTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTT
T ss_pred ccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCC
Confidence 3446799999999999999999988752 3456788888887765 477777777654222200 000 011
Q ss_pred CC------HHHHHHHHHHHhc---CCcEEEEEecccC
Q 003753 219 RD------DQGRAAEIFRRLS---NKKFALLLDDLRE 246 (798)
Q Consensus 219 ~~------~~~~~~~l~~~l~---~~r~LlVlDdv~~ 246 (798)
.. ....+-.+.++++ ++.+|+++||+-.
T Consensus 241 ~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 241 EPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp SCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 11 1122333445554 5899999999854
No 273
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.06 E-value=0.045 Score=58.16 Aligned_cols=59 Identities=24% Similarity=0.314 Sum_probs=40.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhh---hcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCC
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSD---MSHKFGAVIMVKASTELNIEKIQDVIRSRLGID 210 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 210 (798)
-.++.|+|.+|+|||||+..++-.... ....-..++|++....++...+ ..+++.++..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~ 239 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLD 239 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCC
Confidence 469999999999999999987543311 0112356889987776665544 3466666654
No 274
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.05 E-value=0.021 Score=53.57 Aligned_cols=112 Identities=18% Similarity=0.128 Sum_probs=57.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc---cCHHHHHHHHHHHcCCC----CCCCccccCC----
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE---LNIEKIQDVIRSRLGID----PDGDKWKNRD---- 220 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~---~~~~~~~~~i~~~l~~~----~~~~~~~~~~---- 220 (798)
..|-|++-.|.||||.|-...-+.. ...+ .+.++...+. .....++ +.++.. ..+..+...+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~--g~G~-rV~~vQF~Kg~~~~gE~~~l----~~L~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV--GHGK-NVGVVQFIKGTWPNGERNLL----EPHGVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH--HTTC-CEEEEESSCCSSCCHHHHHH----GGGTCEEEECCTTCCCCGGGHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--HCCC-eEEEEEeeCCCCCccHHHHH----HhCCcEEEEcccccccCCCCcHHH
Confidence 4566666677999999988877762 2333 3444433332 2233333 333210 0011111111
Q ss_pred ---HHHHHHHHHHHhcCCcE-EEEEecccCc--------ccccccCCCCCCCcEEEEeCCch
Q 003753 221 ---DQGRAAEIFRRLSNKKF-ALLLDDLRER--------IELSEAGVPVQNASKIVFTTIFE 270 (798)
Q Consensus 221 ---~~~~~~~l~~~l~~~r~-LlVlDdv~~~--------~~~~~~~~p~~~gs~iivTTR~~ 270 (798)
.......+++.+.+.+| |||||++-.. .++.++..-......||+|+|..
T Consensus 102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 11222344555655555 9999998432 12222111134567899999975
No 275
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.03 E-value=0.012 Score=55.00 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=22.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999998875
No 276
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.01 E-value=0.013 Score=54.39 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=22.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998876
No 277
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.00 E-value=0.098 Score=56.17 Aligned_cols=52 Identities=21% Similarity=0.397 Sum_probs=36.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCcc-CHHHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTEL-NIEKIQDVIRS 205 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~ 205 (798)
..++|+|..|+|||||++.+..... ...-+..+++-+++.. ...++..++..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~--~~~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIA--QEHGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHH--HHTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhh--hccCcEEEEeeeccCchHHHHHHHHhhh
Confidence 4689999999999999999988763 2233455666666654 35566655543
No 278
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.99 E-value=0.019 Score=59.74 Aligned_cols=43 Identities=26% Similarity=0.268 Sum_probs=37.5
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++|++..++.+...+..+ .-+.++|.+|+|||+||+.+.+..
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred ceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 6899999999998888664 368899999999999999998876
No 279
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.97 E-value=0.061 Score=56.24 Aligned_cols=97 Identities=21% Similarity=0.319 Sum_probs=54.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhh--hhcCCC-CeEEEEEcCCccCHHHHHHHHHHHcCCCCCC--------Ccccc
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFS--DMSHKF-GAVIMVKASTELNIEKIQDVIRSRLGIDPDG--------DKWKN 218 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~~f-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--------~~~~~ 218 (798)
.-.++.|+|..|+|||||+.+++.... ...... ..++|++....+....+ ..+++..+..... ..+..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 347999999999999999999987651 001111 24588887665544333 3455554432210 00001
Q ss_pred CCHHHHHHHHHHHhc------CCcEEEEEecccCc
Q 003753 219 RDDQGRAAEIFRRLS------NKKFALLLDDLRER 247 (798)
Q Consensus 219 ~~~~~~~~~l~~~l~------~~r~LlVlDdv~~~ 247 (798)
....+....+...+. .+.-+||+|.+-..
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 112233344444443 46778899987654
No 280
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.97 E-value=0.029 Score=57.97 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=33.9
Q ss_pred cchhHHHHHHHHHhh----cCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 133 VGIESRLSEVWRYIE----DDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 133 vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
|+.+...+++++.+. .+....|.|+|+.|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 556666777777663 3556779999999999999999988765
No 281
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.94 E-value=0.13 Score=52.15 Aligned_cols=90 Identities=21% Similarity=0.199 Sum_probs=52.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccC-HHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELN-IEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF 229 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 229 (798)
..+++++|.+|+||||++..++..... . -..+.++....... ..+.+....+..+.+.-.. ....+.........
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~--~-g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~-~~~~~p~~~~~~~l 173 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK--K-GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGE-PGEKDVVGIAKRGV 173 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH--T-TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECC-TTCCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--C-CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEec-CCCCCHHHHHHHHH
Confidence 579999999999999999999887732 2 23456665543222 2333444555555532110 01234555554444
Q ss_pred HHhc-CCcEEEEEecc
Q 003753 230 RRLS-NKKFALLLDDL 244 (798)
Q Consensus 230 ~~l~-~~r~LlVlDdv 244 (798)
+.++ ++.=++|+|-.
T Consensus 174 ~~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 174 EKFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 5554 33337788864
No 282
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.88 E-value=0.023 Score=55.11 Aligned_cols=44 Identities=14% Similarity=0.290 Sum_probs=35.1
Q ss_pred ccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 132 IVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 132 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+-+.++..+++.+.+......+|+|+|.+|+|||||+.++....
T Consensus 11 l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 11 LAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 33555666666666666678999999999999999999998775
No 283
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.87 E-value=0.21 Score=52.03 Aligned_cols=160 Identities=10% Similarity=0.009 Sum_probs=94.2
Q ss_pred HHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCH
Q 003753 142 VWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDD 221 (798)
Q Consensus 142 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 221 (798)
+.+.+...-.++..++|..|.||++.|+.+.+... ...|+....+.+....++.++.
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~--------------------- 65 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIF--------------------- 65 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHH---------------------
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHH---------------------
Confidence 44444434567999999999999999999887652 2334322222232233333332
Q ss_pred HHHHHHHHH-HhcCCcEEEEEecccC-c--cc---cccc-CCCCCCCcEEEEeCCc-------hHHhhhc-CCCcceecc
Q 003753 222 QGRAAEIFR-RLSNKKFALLLDDLRE-R--IE---LSEA-GVPVQNASKIVFTTIF-------EEVCSSM-SVDWRFKVD 285 (798)
Q Consensus 222 ~~~~~~l~~-~l~~~r~LlVlDdv~~-~--~~---~~~~-~~p~~~gs~iivTTR~-------~~v~~~~-~~~~~~~l~ 285 (798)
..+.. -+-+++-++|+|++.. . .. +.+. .- ...++.+|++|.. ..+.... .....++..
T Consensus 66 ----~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~-p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~ 140 (343)
T 1jr3_D 66 ----SLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGL-LHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQ 140 (343)
T ss_dssp ----HHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTT-CBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEEC
T ss_pred ----HHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhc-CCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEee
Confidence 22221 2345677888999866 2 22 2222 11 2346666655432 2343332 344678999
Q ss_pred CCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003753 286 YLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGLPLALVTI 332 (798)
Q Consensus 286 ~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 332 (798)
+++.++....+.+.+.......+ .+.+..+++.++|.+.++...
T Consensus 141 ~l~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQLNLELD---DAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp CCCTTHHHHHHHHHHHHTTCEEC---HHHHHHHHHSSTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhchHHHHHHHH
Confidence 99999998888877654332222 346788889999988776653
No 284
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.84 E-value=0.097 Score=51.55 Aligned_cols=47 Identities=17% Similarity=0.073 Sum_probs=32.5
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDV 202 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 202 (798)
-.++.|.|.+|+||||||.+++..... .-..++|++.... ..++.+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~~--~~~~~~~ 69 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEEH--PVQVRQN 69 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSSC--HHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccCC--HHHHHHH
Confidence 369999999999999999988766522 2245777775543 3444433
No 285
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.83 E-value=0.013 Score=54.37 Aligned_cols=20 Identities=45% Similarity=0.634 Sum_probs=18.9
Q ss_pred eEEEEEecCCchHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQL 171 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v 171 (798)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 286
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.80 E-value=0.015 Score=59.86 Aligned_cols=41 Identities=32% Similarity=0.519 Sum_probs=30.3
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCC
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAST 192 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 192 (798)
++.+||+|.|-||+||||.+..+.--... .. ..+.-|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~--~G-kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI--LG-KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH--TT-CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH--CC-CeEEEEecCC
Confidence 56799999999999999999988777632 22 2456666553
No 287
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.80 E-value=0.12 Score=55.07 Aligned_cols=89 Identities=15% Similarity=0.151 Sum_probs=48.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHH--HHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIE--KIQDVIRSRLGIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 228 (798)
..+++|+|.+|+||||++..++.... ..-..+..+... .+... +.+....+..+.+.-.. ....+...+....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~---~~g~~Vllvd~D-~~r~aa~~qL~~~~~~~gv~v~~~-~~~~~p~~i~~~~ 172 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEV-MDGESPESIRRRV 172 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEEC-CTTCCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEeecc-ccCchhHHHHHHhcccCCccEEec-CCCCCHHHHHHHH
Confidence 47999999999999999999988873 222345555542 23322 22344455555432100 0123444444434
Q ss_pred HHHhcCCcE-EEEEecc
Q 003753 229 FRRLSNKKF-ALLLDDL 244 (798)
Q Consensus 229 ~~~l~~~r~-LlVlDdv 244 (798)
.+.++.+.| ++|+|-.
T Consensus 173 l~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 173 EEKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHHTTCSEEEEECC
T ss_pred HHHHHHCCCCEEEEcCC
Confidence 444432233 6667753
No 288
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.80 E-value=0.016 Score=55.30 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=23.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+|.|+|+.|+||||+|+.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998876
No 289
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.79 E-value=0.089 Score=53.12 Aligned_cols=43 Identities=28% Similarity=0.276 Sum_probs=30.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcC-------CCCeEEEEEcCCc
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSH-------KFGAVIMVKASTE 193 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------~f~~~~wv~vs~~ 193 (798)
-.++.|+|.+|+|||||+.+++........ .-..+++++....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 369999999999999999998875521100 0234667776554
No 290
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.78 E-value=0.016 Score=54.85 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=21.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDT 174 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (798)
...+++|+|++|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999764
No 291
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.77 E-value=0.029 Score=55.61 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDT 174 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (798)
-.+++|+|++|+|||||++.++..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 469999999999999999998843
No 292
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.71 E-value=0.12 Score=55.96 Aligned_cols=26 Identities=38% Similarity=0.593 Sum_probs=23.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+++|+|.+|+|||||++.++...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 35799999999999999999998876
No 293
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.69 E-value=0.063 Score=62.05 Aligned_cols=166 Identities=14% Similarity=0.236 Sum_probs=78.5
Q ss_pred cccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHH
Q 003753 131 NIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIE 197 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 197 (798)
++.|.++.+++|.+.+.- ...+-+.++|++|.|||.+|+++++.. .. -++.++. .
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~-----~f~~v~~----~ 545 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QA-----NFISIKG----P 545 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TC-----EEEECCH----H
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CC-----ceEEecc----c
Confidence 567888888888776521 123457899999999999999999876 21 1223321 1
Q ss_pred HHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHhcCCcEEEEEecccCccc----------------cccc-----CCC
Q 003753 198 KIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIFRRLSNKKFALLLDDLRERIE----------------LSEA-----GVP 256 (798)
Q Consensus 198 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~----------------~~~~-----~~p 256 (798)
++ +.. +...++..+.......-+..+.+|+||+++.... ...+ ++.
T Consensus 546 ~l----~s~---------~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 546 EL----LTM---------WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp HH----HTT---------TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred hh----hcc---------ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 21 111 1223333333333334455789999999875310 0001 111
Q ss_pred CCCCcEEEEeCCchHH-----hhhcCCCcceeccCCChHHHHHHHHHhccCcccCCChhHHHHHHHHHHHhCCC
Q 003753 257 VQNASKIVFTTIFEEV-----CSSMSVDWRFKVDYLPQEEAWNLFRLKVTDEVLNSHPEIRELAETVANMCGGL 325 (798)
Q Consensus 257 ~~~gs~iivTTR~~~v-----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 325 (798)
...+.-||-||...+. .+...-...+.++.-+.++-.++|+.++.......+.++ ..+++.+.|+
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl----~~la~~t~g~ 682 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGF 682 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHhCCCC
Confidence 2233233335543322 221123456677766777777788777654332223333 3445555543
No 294
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.68 E-value=0.023 Score=54.32 Aligned_cols=27 Identities=37% Similarity=0.432 Sum_probs=24.5
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
....+|+|+|+.|+||||+|+.+....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998876
No 295
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.62 E-value=0.019 Score=53.71 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=20.5
Q ss_pred eEEEEEecCCchHHHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLND 173 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (798)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999977
No 296
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.62 E-value=0.018 Score=54.00 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=22.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
++++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998765
No 297
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.58 E-value=0.037 Score=56.15 Aligned_cols=56 Identities=14% Similarity=-0.003 Sum_probs=34.6
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHH
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIR 204 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 204 (798)
....+|+|+|..|+||||||+.+.............+..|+...-.-.......+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 45679999999999999999998877632100123444445444333334444443
No 298
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.56 E-value=0.015 Score=53.94 Aligned_cols=24 Identities=42% Similarity=0.505 Sum_probs=21.9
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.+|+|+|+.|+||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998875
No 299
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.55 E-value=0.019 Score=53.91 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=22.5
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.+.|.|+|+.|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998876
No 300
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.50 E-value=0.021 Score=54.55 Aligned_cols=27 Identities=26% Similarity=0.462 Sum_probs=23.3
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998765
No 301
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.49 E-value=0.093 Score=50.14 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=21.3
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+|.|.|++|+||+|.|+.++..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998877
No 302
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.44 E-value=0.026 Score=53.33 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998765
No 303
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.44 E-value=0.024 Score=53.64 Aligned_cols=24 Identities=42% Similarity=0.625 Sum_probs=22.3
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999887
No 304
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.43 E-value=0.024 Score=53.41 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=23.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+|.|.|++|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998887
No 305
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.40 E-value=0.31 Score=53.28 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..++|+|+|.+|+||||++..++...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998877
No 306
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.39 E-value=0.11 Score=53.54 Aligned_cols=38 Identities=29% Similarity=0.446 Sum_probs=28.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEc
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKA 190 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 190 (798)
...+|+|+|.+|+||||++..++..... . -..+.++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~-g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAE--L-GYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHH--T-TCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--C-CCeEEEEeC
Confidence 4579999999999999999999887732 2 234555544
No 307
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.36 E-value=0.018 Score=55.12 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 308
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.30 E-value=0.026 Score=52.46 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 309
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.29 E-value=0.082 Score=66.72 Aligned_cols=88 Identities=17% Similarity=0.158 Sum_probs=58.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccc-cCCHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWK-NRDDQGRAAEI 228 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~~~l 228 (798)
..+++.|+|++|+|||+||.++.... ...=..++|+++...++... ++.++.+.+.-... ....++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea---~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH---HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 45799999999999999999998876 23334678888888777655 45666443221111 22334444455
Q ss_pred HHHhc-CCcEEEEEeccc
Q 003753 229 FRRLS-NKKFALLLDDLR 245 (798)
Q Consensus 229 ~~~l~-~~r~LlVlDdv~ 245 (798)
++..+ .+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 54443 466799999985
No 310
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.27 E-value=0.022 Score=59.85 Aligned_cols=45 Identities=31% Similarity=0.406 Sum_probs=34.3
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+++|.+..++.+...+......-+.|+|.+|+|||++|+.+++..
T Consensus 25 ~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 688998876665444433233448999999999999999998876
No 311
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.20 E-value=0.15 Score=52.41 Aligned_cols=51 Identities=8% Similarity=0.088 Sum_probs=38.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSR 206 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 206 (798)
-.++.|.|.+|+||||||.+++.... ... ..++|++.. .+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a--~~g-~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMS--DND-DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHH--TTT-CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH--HcC-CeEEEEECC--CCHHHHHHHHHHH
Confidence 46999999999999999999987763 222 677887655 4567777776654
No 312
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.19 E-value=0.027 Score=56.04 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=22.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.+|.|.|+.|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 579999999999999999998876
No 313
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.16 E-value=0.026 Score=53.28 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=22.3
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998876
No 314
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.14 E-value=0.031 Score=59.01 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=36.8
Q ss_pred cccchhHHHHHHHHHhhc---------------CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIED---------------DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~---------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999998887721 134578999999999999999998876
No 315
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.13 E-value=0.023 Score=53.22 Aligned_cols=25 Identities=44% Similarity=0.476 Sum_probs=22.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++|.|+|++|+||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998776
No 316
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.13 E-value=0.048 Score=50.05 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=23.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..++++|.|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35799999999999999999998876
No 317
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.13 E-value=0.024 Score=54.25 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=22.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998764
No 318
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.12 E-value=0.097 Score=53.24 Aligned_cols=90 Identities=14% Similarity=0.170 Sum_probs=48.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccC-HHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELN-IEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF 229 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 229 (798)
..+++|+|.+|+||||++..++..... . -..+.++....... ....+..+.+..+.+.-.. ....+..++.....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~--~-~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~-~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG--K-GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEV-MDGESPESIRRRVE 173 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH--T-TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEEC-CTTCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--c-CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEc-CCCCCHHHHHHHHH
Confidence 479999999999999999999887732 2 23455555432221 1122334445555432100 01234444433333
Q ss_pred HHh-cCCcEEEEEecc
Q 003753 230 RRL-SNKKFALLLDDL 244 (798)
Q Consensus 230 ~~l-~~~r~LlVlDdv 244 (798)
..+ ..+.=++|+|-.
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 333 344557888875
No 319
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.11 E-value=0.027 Score=53.12 Aligned_cols=22 Identities=45% Similarity=0.542 Sum_probs=20.3
Q ss_pred eEEEEEecCCchHHHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLND 173 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (798)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 320
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.10 E-value=0.041 Score=58.42 Aligned_cols=45 Identities=20% Similarity=0.191 Sum_probs=35.9
Q ss_pred cccchhHHHHHHHHHhh----c--------------------------CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIE----D--------------------------DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~----~--------------------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++|.+..++.|...+. . .....+.++|++|+|||++|+.+++..
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 57899988888877662 0 123568899999999999999998876
No 321
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.09 E-value=0.03 Score=53.92 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=23.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+|+|+|..|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44699999999999999999998875
No 322
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.06 E-value=0.035 Score=60.81 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=37.1
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++|.+..++.+...+..+ .-|.++|++|+|||+||+.+++..
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 5899999999888877654 368899999999999999998865
No 323
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.03 E-value=0.024 Score=52.74 Aligned_cols=24 Identities=42% Similarity=0.542 Sum_probs=21.7
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
++|.|.|++|+||||+|+.+....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998876
No 324
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.02 E-value=0.03 Score=51.70 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=22.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+|+|.|+.|+||||+|+.+....
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 325
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.01 E-value=0.031 Score=52.14 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=21.2
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++|+|..|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 326
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.99 E-value=0.022 Score=53.62 Aligned_cols=24 Identities=46% Similarity=0.635 Sum_probs=22.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998776
No 327
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.98 E-value=0.034 Score=52.73 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+|+|.|+.|+||||+|+.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998765
No 328
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.97 E-value=0.055 Score=54.85 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=23.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 329
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.96 E-value=0.03 Score=53.84 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=23.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+++|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998765
No 330
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.96 E-value=0.034 Score=52.66 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+|+|.|+.|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 331
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.96 E-value=0.031 Score=53.43 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=21.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998876
No 332
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.90 E-value=0.033 Score=52.29 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDT 174 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (798)
...|+|+|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 333
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.87 E-value=0.033 Score=55.17 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=23.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+|+|+|+.|+|||||++.+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998765
No 334
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.87 E-value=0.027 Score=53.97 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=23.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+|.|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998765
No 335
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.87 E-value=0.037 Score=52.88 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=23.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+|+|.|+.|+||||+|+.+....
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45799999999999999999998765
No 336
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.86 E-value=0.032 Score=54.37 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=22.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998765
No 337
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.86 E-value=0.081 Score=50.73 Aligned_cols=25 Identities=32% Similarity=0.439 Sum_probs=22.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+|.|.|+.|+||||+|+.+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999887
No 338
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.85 E-value=0.083 Score=50.82 Aligned_cols=32 Identities=31% Similarity=0.341 Sum_probs=26.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCe
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGA 184 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~ 184 (798)
..+|+|.|+.|+||||+|+.+..... ...++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~--~~~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC--AAGHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH--HTTCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--HcCCcE
Confidence 46899999999999999999998873 244554
No 339
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.84 E-value=0.16 Score=52.34 Aligned_cols=52 Identities=15% Similarity=0.138 Sum_probs=37.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHc
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRL 207 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 207 (798)
-.++.|.|.+|+||||||..++..... .=..++|++. +.+..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 368999999999999999999887632 2245667654 445667777765543
No 340
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.83 E-value=0.032 Score=53.41 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=20.2
Q ss_pred eEEEEEecCCchHHHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLND 173 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (798)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 341
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.82 E-value=0.037 Score=52.76 Aligned_cols=26 Identities=38% Similarity=0.420 Sum_probs=22.6
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHH
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDT 174 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (798)
....+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35679999999999999999998663
No 342
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.82 E-value=0.052 Score=54.00 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=23.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998775
No 343
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.82 E-value=0.033 Score=53.34 Aligned_cols=25 Identities=36% Similarity=0.407 Sum_probs=22.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+++|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999997754
No 344
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.80 E-value=0.04 Score=53.05 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=24.5
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+||.|.|++|+||||.|+.++..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999998877
No 345
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.80 E-value=0.078 Score=52.31 Aligned_cols=42 Identities=21% Similarity=0.160 Sum_probs=29.6
Q ss_pred chhHHHHHHHHHhh--cCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 134 GIESRLSEVWRYIE--DDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 134 Gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+....+.++.+... .....+|+|.|++|+||||+|+.+.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 10 STIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 33334444444332 2456789999999999999999998765
No 346
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.77 E-value=0.038 Score=51.92 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...|+|.|+.|+||||+|+.+....
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 347
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.76 E-value=0.058 Score=55.34 Aligned_cols=99 Identities=18% Similarity=0.077 Sum_probs=51.8
Q ss_pred ccchhHHHHHHHHHhhc----CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHc
Q 003753 132 IVGIESRLSEVWRYIED----DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRL 207 (798)
Q Consensus 132 ~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 207 (798)
++|-...+..+...+.. ....+|+|.|..|+||||+|+.+...... ...-..+..+....-.-...... ..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~-~~~~~~v~~i~~D~f~~~~~~l~----~~ 143 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR-WPDHPNVEVITTDGFLYSNAKLE----KQ 143 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT-STTCCCEEEEEGGGGBCCHHHHH----HT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc-cCCCCeEEEEeecccccchhhhh----hH
Confidence 34544455544444422 34569999999999999999998777621 01112345555443222111111 11
Q ss_pred CCCCCCCccccCCHHHHHHHHHHHhcCC
Q 003753 208 GIDPDGDKWKNRDDQGRAAEIFRRLSNK 235 (798)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 235 (798)
+...........+.+...+.+.....++
T Consensus 144 ~~~~~~g~P~~~D~~~l~~~L~~L~~g~ 171 (321)
T 3tqc_A 144 GLMKRKGFPESYDMPSLLRVLNAIKSGQ 171 (321)
T ss_dssp TCGGGTTSGGGBCHHHHHHHHHHHHTTC
T ss_pred HHHhhccCcccccHHHHHHHHHhhhccc
Confidence 1110001124556667777676666665
No 348
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.75 E-value=0.027 Score=52.87 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.7
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998875
No 349
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.71 E-value=0.037 Score=53.13 Aligned_cols=26 Identities=42% Similarity=0.612 Sum_probs=22.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+|+|+|+.|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35799999999999999999886643
No 350
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.71 E-value=0.037 Score=52.57 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=22.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+|+|.|+.|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 351
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.69 E-value=0.013 Score=61.25 Aligned_cols=114 Identities=17% Similarity=0.184 Sum_probs=61.4
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 228 (798)
....+++|+|+.|+|||||.+.+....... .-..++.+.-.-.+.... ....... . ....+.......+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~-------~~~~v~q-~-~~~~~~~~~~~~L 189 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHES-------KKCLVNQ-R-EVHRDTLGFSEAL 189 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCC-------SSSEEEE-E-EBTTTBSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhc-------cccceee-e-eeccccCCHHHHH
Confidence 344599999999999999999988766321 112233222111110000 0000000 0 0011112344578
Q ss_pred HHHhcCCcEEEEEecccCcccccccCCCCCCCcEEEEeCCchHHh
Q 003753 229 FRRLSNKKFALLLDDLRERIELSEAGVPVQNASKIVFTTIFEEVC 273 (798)
Q Consensus 229 ~~~l~~~r~LlVlDdv~~~~~~~~~~~p~~~gs~iivTTR~~~v~ 273 (798)
...|...+=+|++|.+.+.+.+..+.--...|..|++||-..+.+
T Consensus 190 a~aL~~~PdvillDEp~d~e~~~~~~~~~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 190 RSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAA 234 (356)
T ss_dssp HHHTTSCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEESCSSHH
T ss_pred HHHhhhCcCEEecCCCCCHHHHHHHHHHHhcCCEEEEEEccChHH
Confidence 889999999999999986543322111123466688888665543
No 352
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.68 E-value=0.03 Score=53.31 Aligned_cols=24 Identities=46% Similarity=0.585 Sum_probs=22.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998765
No 353
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.67 E-value=0.042 Score=51.77 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=9.2
Q ss_pred HHhccCCCCCeeEEEEe
Q 003753 642 EELESLKHLQEISVIIL 658 (798)
Q Consensus 642 ~~L~~l~~L~~L~l~~~ 658 (798)
+.|..-+.|..|++..+
T Consensus 151 ~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 151 MAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHCSSCCEEECCCC
T ss_pred HHHHhCCCcCeEeccCC
Confidence 44555556666665543
No 354
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.64 E-value=0.04 Score=55.07 Aligned_cols=25 Identities=44% Similarity=0.634 Sum_probs=22.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998875
No 355
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.64 E-value=0.036 Score=57.42 Aligned_cols=52 Identities=12% Similarity=0.102 Sum_probs=34.6
Q ss_pred HHHHHhhc-CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc
Q 003753 141 EVWRYIED-DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE 193 (798)
Q Consensus 141 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 193 (798)
++++.+.. +.-..++|+|..|+|||+|+.++.+........+.+ +++-+++.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 44555533 445689999999999999999998876321123333 45666654
No 356
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.59 E-value=0.032 Score=51.65 Aligned_cols=24 Identities=29% Similarity=0.474 Sum_probs=21.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998875
No 357
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.59 E-value=0.03 Score=52.45 Aligned_cols=24 Identities=46% Similarity=0.635 Sum_probs=21.3
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+.|.|+|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998775
No 358
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.59 E-value=0.032 Score=51.74 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=19.7
Q ss_pred CceEEEEEecCCchHHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLN 172 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~ 172 (798)
...+++|+|+.|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34699999999999999999643
No 359
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.55 E-value=0.045 Score=51.67 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 360
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.52 E-value=0.013 Score=68.71 Aligned_cols=46 Identities=26% Similarity=0.384 Sum_probs=37.1
Q ss_pred CcccchhHHHHHHHHHhhc-------------CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 130 NNIVGIESRLSEVWRYIED-------------DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.+++|.+..++++.+.+.- .....+.++|++|+||||||+.+++..
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 3578988888888877632 123568899999999999999999887
No 361
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.52 E-value=0.043 Score=49.96 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=23.8
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..-.+++|+|..|+|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445799999999999999999998865
No 362
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.51 E-value=0.036 Score=53.11 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=20.1
Q ss_pred eEEEEEecCCchHHHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLND 173 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~ 173 (798)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 363
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.47 E-value=0.031 Score=52.33 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=18.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998765
No 364
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.45 E-value=0.045 Score=51.69 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=22.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+|+|+|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999997763
No 365
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.42 E-value=0.043 Score=51.88 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=23.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..++++|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998765
No 366
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.41 E-value=0.056 Score=57.89 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=36.7
Q ss_pred cccchhHHHHHHHHHhhc--------------CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIED--------------DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++|.+..++.+...+.. ...+-|.++|++|+||||+|+.++...
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 688999988888776622 124568999999999999999998876
No 367
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.39 E-value=0.04 Score=52.93 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=23.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.-.+++|+|+.|+|||||++.+....
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34699999999999999999998765
No 368
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.39 E-value=0.045 Score=50.37 Aligned_cols=23 Identities=35% Similarity=0.312 Sum_probs=21.2
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 369
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.37 E-value=0.045 Score=52.19 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.5
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+|.|.|+.|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 370
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.36 E-value=0.046 Score=56.11 Aligned_cols=43 Identities=30% Similarity=0.323 Sum_probs=29.9
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCC
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAST 192 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 192 (798)
....+|+|+|..|+|||||++.+........+. ..+.+|.-..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-~~v~~v~qd~ 130 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-PRVDLVTTDG 130 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-CCEEEEEGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCC-CeEEEEecCc
Confidence 345799999999999999999998876321111 2355665433
No 371
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.33 E-value=0.1 Score=49.37 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 372
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.31 E-value=0.048 Score=54.17 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=23.4
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
....+|+|.|+.|+||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998765
No 373
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.31 E-value=0.049 Score=53.89 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.5
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
....+|+|.|..|+|||||++.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999998764
No 374
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.29 E-value=0.38 Score=53.09 Aligned_cols=56 Identities=13% Similarity=0.067 Sum_probs=38.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHH-cCCC
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSR-LGID 210 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~-l~~~ 210 (798)
-.++.|.|.+|+||||||.+++.... ..+=..++|++... +.+++...++.. .+.+
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a--~~~g~~vl~~s~E~--s~~~l~~r~~~~~~~~~ 298 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWG--TAMGKKVGLAMLEE--SVEETAEDLIGLHNRVR 298 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHT--TTSCCCEEEEESSS--CHHHHHHHHHHHHTTSC
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHH--HhcCCcEEEEeccC--CHHHHHHHHHHHHcCCC
Confidence 46899999999999999999988763 22123577776544 466777766543 3443
No 375
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.27 E-value=0.048 Score=51.56 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=21.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 376
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.23 E-value=0.032 Score=53.76 Aligned_cols=24 Identities=42% Similarity=0.772 Sum_probs=21.9
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.+|+|.|..|+||||+|+.+....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998877
No 377
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.21 E-value=0.052 Score=52.17 Aligned_cols=32 Identities=28% Similarity=0.277 Sum_probs=26.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCe
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGA 184 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~ 184 (798)
..+|+|.|+.|+||||+|+.+..... ...++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~--~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK--NNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH--HTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcE
Confidence 46899999999999999999988763 245555
No 378
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.14 E-value=0.071 Score=54.41 Aligned_cols=26 Identities=31% Similarity=0.575 Sum_probs=23.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+++|+|++|+||||+++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998877
No 379
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.12 E-value=0.082 Score=54.25 Aligned_cols=43 Identities=30% Similarity=0.475 Sum_probs=30.7
Q ss_pred cCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCc
Q 003753 148 DDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTE 193 (798)
Q Consensus 148 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 193 (798)
....++|+|+|-||+||||+|..++..... .. ..+.-|+....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~--~G-~~VlliD~D~~ 80 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSI--LG-KRVLQIGCDPK 80 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHH--TT-CCEEEEEESSS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHH--CC-CeEEEEeCCCC
Confidence 356789999999999999999998887742 22 24566665543
No 380
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.11 E-value=0.066 Score=56.98 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=54.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCC----eEEEEEcCCcc-CHHHHHHHHHHHcCCCCCC--CccccCCHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFG----AVIMVKASTEL-NIEKIQDVIRSRLGIDPDG--DKWKNRDDQG 223 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~----~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~ 223 (798)
-..++|.|..|+|||+|+.++.+.. ..+-+ .++++-+++.. .+.++..++.+.=.....- ....+.....
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~---~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~ 227 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQA---TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIE 227 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHC---BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHH
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHH---HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHH
Confidence 3468899999999999999998876 22223 56667676654 4677777765531000000 0001111111
Q ss_pred ------HHHHHHHHhc---CCcEEEEEecccC
Q 003753 224 ------RAAEIFRRLS---NKKFALLLDDLRE 246 (798)
Q Consensus 224 ------~~~~l~~~l~---~~r~LlVlDdv~~ 246 (798)
..-.+.++++ ++.+|+++||+-.
T Consensus 228 r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 228 RIATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 1223445553 6899999999854
No 381
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.06 E-value=0.039 Score=53.43 Aligned_cols=25 Identities=40% Similarity=0.655 Sum_probs=22.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
-.+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998765
No 382
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.04 E-value=0.053 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998766
No 383
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.02 E-value=0.051 Score=53.98 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=23.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+|+|+|+.|+||||+++.+....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999998765
No 384
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.97 E-value=0.058 Score=52.30 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.5
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...|.|.|+.|+||||+|+.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998876
No 385
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.93 E-value=0.052 Score=52.71 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=22.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998876
No 386
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.93 E-value=0.055 Score=52.74 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...|.|.|+.|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998765
No 387
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.91 E-value=0.045 Score=50.59 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=22.7
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFS 176 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (798)
++++|+|..|+|||||++.+.....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999988773
No 388
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.90 E-value=0.1 Score=49.16 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=28.4
Q ss_pred HHHHHHHHhhc-CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 138 RLSEVWRYIED-DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 138 ~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
-+..+..++.. +....+.|+|++|+||||+|..+++..
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 35555555543 223479999999999999999998876
No 389
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.82 E-value=0.054 Score=52.40 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=23.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.-.+++|+|+.|+|||||++.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34699999999999999999998875
No 390
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.74 E-value=0.11 Score=49.87 Aligned_cols=27 Identities=33% Similarity=0.351 Sum_probs=24.0
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
....+|.|.|+.|+||||+|+.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 445799999999999999999998876
No 391
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.68 E-value=0.049 Score=58.53 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=23.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFS 176 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (798)
..+|+|+|.+|+||||+|..++....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999888763
No 392
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.68 E-value=0.12 Score=53.13 Aligned_cols=83 Identities=18% Similarity=0.078 Sum_probs=44.7
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEI 228 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 228 (798)
....+|+|+|..|+|||||++.+...... ...-..+.+++.......... ....+...........+.......+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~-~~~~G~i~vi~~d~~~~~~~~----~~~~~~vq~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSR-WPEHRRVELITTDGFLHPNQV----LKERGLMKKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTT-STTCCCEEEEEGGGGBCCHHH----HHHHTCTTCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh-CCCCCeEEEEecCCccCcHHH----HHhCCEeecCCCCCCccHHHHHHHH
Confidence 44579999999999999999999886520 011123455554433221222 2233332111112345666666666
Q ss_pred HHHhcCCc
Q 003753 229 FRRLSNKK 236 (798)
Q Consensus 229 ~~~l~~~r 236 (798)
.....++.
T Consensus 153 ~~l~~~~~ 160 (308)
T 1sq5_A 153 SDLKSGVP 160 (308)
T ss_dssp HHHTTTCS
T ss_pred HHHhCCCC
Confidence 55544443
No 393
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.68 E-value=0.059 Score=52.05 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997765
No 394
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.67 E-value=0.066 Score=49.92 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+|+|.|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 395
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.58 E-value=0.057 Score=50.87 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.+++|+|..|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999998876
No 396
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.49 E-value=0.075 Score=51.36 Aligned_cols=23 Identities=39% Similarity=0.497 Sum_probs=20.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLND 173 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~ 173 (798)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 397
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.48 E-value=0.071 Score=53.87 Aligned_cols=23 Identities=39% Similarity=0.839 Sum_probs=21.1
Q ss_pred CceEEEEEecCCchHHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLN 172 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~ 172 (798)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999999997
No 398
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.43 E-value=0.22 Score=52.17 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=29.2
Q ss_pred HHHHHHHhh--cCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 139 LSEVWRYIE--DDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 139 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..++.+.+. .++..+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 445555553 3567899999999999999999988776
No 399
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.39 E-value=0.082 Score=53.91 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=23.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+++|+|..|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999998877
No 400
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.36 E-value=0.068 Score=50.98 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+|+|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999997754
No 401
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.31 E-value=0.062 Score=53.11 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+|+|+|+.|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998866
No 402
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.30 E-value=0.081 Score=48.99 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=22.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++++|+|..|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998876
No 403
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.29 E-value=0.068 Score=52.50 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=23.0
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.. .+++|+|+.|+|||||++.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 799999999999999999987754
No 404
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.26 E-value=0.08 Score=51.50 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=22.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..+|+|.|++|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998776
No 405
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.26 E-value=0.087 Score=59.69 Aligned_cols=43 Identities=21% Similarity=0.345 Sum_probs=37.6
Q ss_pred cccchhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 131 NIVGIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 131 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++|.+..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 42 ~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred eEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 6899999998888777655 589999999999999999998876
No 406
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.23 E-value=0.18 Score=49.15 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=23.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
....|+|.|+.|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34789999999999999999999987
No 407
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.21 E-value=0.081 Score=50.58 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=21.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+|+|.|+.|+||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998865
No 408
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.19 E-value=0.08 Score=54.49 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=22.3
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.+|+|.|+.|+||||||+.++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998876
No 409
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.14 E-value=0.2 Score=51.00 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=34.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSR 206 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 206 (798)
.-.+++|.|.+|+|||||++.++..... ..-..++|+.... +..++...+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCcC--CHHHHHHHHHHH
Confidence 3469999999999999999999887632 1112466665433 344454444443
No 410
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.08 E-value=0.088 Score=50.87 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..|.|.|+.|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998876
No 411
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.07 E-value=0.088 Score=50.71 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998865
No 412
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.06 E-value=0.17 Score=52.62 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=34.1
Q ss_pred hhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccC
Q 003753 146 IEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELN 195 (798)
Q Consensus 146 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 195 (798)
+.+...+++.+.|.||+||||+|..++...... ..=..+.-|+.....+
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~-~~g~~vllid~D~~~~ 61 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALA-QPNEQFLLISTDPAHN 61 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHH-CTTSCEEEEECCSSCH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHh-cCCCeEEEEECCCCCC
Confidence 344567899999999999999999988877310 2334566666654433
No 413
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.05 E-value=0.2 Score=51.84 Aligned_cols=49 Identities=20% Similarity=0.296 Sum_probs=35.2
Q ss_pred hhcCCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHH
Q 003753 146 IEDDGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIE 197 (798)
Q Consensus 146 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 197 (798)
+.+...+++.+.|.||+||||+|..++.... ..-..+.-|+.....+..
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la---~~g~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLA---KVRRSVLLLSTDPAHNLS 59 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHT---TSSSCEEEEECCSSCHHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHH---hCCCcEEEEECCCCCChh
Confidence 4445578899999999999999999988873 333456667666544333
No 414
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.04 E-value=0.051 Score=53.14 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=16.5
Q ss_pred ceEEEEEecCCchHHHHHHHHH-HHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLN-DTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~-~~~ 175 (798)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 654
No 415
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.02 E-value=0.069 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=21.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDT 174 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (798)
.+++|+|+.|+|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998876
No 416
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.98 E-value=0.13 Score=48.41 Aligned_cols=108 Identities=10% Similarity=0.009 Sum_probs=69.4
Q ss_pred CCCCcceeeeeccc-cccc-----ccHHHHhcCCceeEEeCCCCccccc-----ccccccCCCCCCEEEcCCCCCcc---
Q 003753 513 PCSPRLLTLLVRYT-MIKE-----FENKFFKSMYALRVLDSSQNAKLSK-----LHVGEGELIDLQYLNLSNTNICE--- 578 (798)
Q Consensus 513 ~~~~~L~~L~l~~~-~~~~-----l~~~~~~~l~~Lr~L~L~~~~~i~~-----lp~~i~~L~~L~~L~Ls~~~i~~--- 578 (798)
.+-+.|+.|+|++| .+.. +... +..-+.|+.|+|++| .+.. +.+.+..-..|++|+|++|.|..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~a-L~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEA-ACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHH-HTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHH-HhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 34567888888875 5542 2222 566688999999998 7763 33344455779999999998752
Q ss_pred --cCccccCCCcccEEeCCCCCC--ccc-----ccchhhcCCCCCccccccCCC
Q 003753 579 --LPIGIKSCTHLRTLLLDGTEN--LKA-----IPVGMLSSLLSLRVFSWVPTR 623 (798)
Q Consensus 579 --lp~~i~~l~~L~~L~l~~~~~--l~~-----lp~~~i~~L~~L~~L~l~~~~ 623 (798)
+-..+..-+.|++|+|++|.. +.. +-. ++..-+.|..|+++.+.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCC
Confidence 334455556799999986531 221 222 25556778888887654
No 417
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.96 E-value=0.068 Score=51.95 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=21.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
-.+++|+|+.|+|||||++.++.-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987654
No 418
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.91 E-value=0.09 Score=51.05 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.0
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998776
No 419
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.86 E-value=0.077 Score=51.97 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=26.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEE
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMV 188 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 188 (798)
.-.+++|+|+.|+|||||++.+..-. ....+.+++
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~----~p~~G~I~~ 64 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD----KPTEGEVYI 64 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC----CCCceEEEE
Confidence 34699999999999999999987654 233455554
No 420
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.85 E-value=0.1 Score=51.13 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=22.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...|.|.|+.|+||||+|+.+....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 421
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.79 E-value=0.86 Score=49.27 Aligned_cols=56 Identities=9% Similarity=0.013 Sum_probs=38.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHH-cCCC
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSR-LGID 210 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~-l~~~ 210 (798)
-.++.|.|.+|+||||+|.+++..... ..-..++|++.. .+..++...++.. .+.+
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE--~~~~~l~~R~~~~~~~i~ 256 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLE--MPAAQLTLRMMCSEARID 256 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESS--SCHHHHHHHHHHHHTTCC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECC--CCHHHHHHHHHHHHcCCC
Confidence 468999999999999999999887632 222357776654 4566777766543 3443
No 422
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.77 E-value=0.25 Score=48.17 Aligned_cols=37 Identities=24% Similarity=0.432 Sum_probs=28.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEE
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVK 189 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 189 (798)
...|.|.|+.|+||||+++.+..... ...+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~--~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ--QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH--HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hcCCCeeeeec
Confidence 46899999999999999999998873 34566444443
No 423
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.73 E-value=0.12 Score=53.80 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=23.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+++|+|..|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 35799999999999999999998877
No 424
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.63 E-value=0.29 Score=61.87 Aligned_cols=90 Identities=22% Similarity=0.261 Sum_probs=57.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKWKNRDDQGRAAEIF 229 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 229 (798)
..+.+.++|.+|+||||||.++.... ...=..++|+++.+..+.-. +..++...+.......+..+....+.
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea---~k~Ge~~~Fit~ee~~~~L~-----a~~~G~dl~~l~~~~pd~~e~~~~i~ 1151 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1151 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH---HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH---HHcCCeEEEEEccccHHHHH-----HHHcCCChhHheeecCcchHHHHHHH
Confidence 34689999999999999999998876 23345688888888766443 45666554321111112233334444
Q ss_pred HHhc--CCcEEEEEecccCc
Q 003753 230 RRLS--NKKFALLLDDLRER 247 (798)
Q Consensus 230 ~~l~--~~r~LlVlDdv~~~ 247 (798)
+.+. .+.-++|+|++...
T Consensus 1152 ~~l~~~~~~dlvVIDsl~~L 1171 (2050)
T 3cmu_A 1152 DALARSGAVDVIVVDSVAAL 1171 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGGC
T ss_pred HHHHHhCCCCEEEECCcccc
Confidence 4332 46779999997643
No 425
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.58 E-value=0.14 Score=54.74 Aligned_cols=97 Identities=9% Similarity=0.057 Sum_probs=55.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcC-CCCeEEEEEcCCcc-CHHHHHHHHHHHcCCCCCC--CccccCCHH---
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSH-KFGAVIMVKASTEL-NIEKIQDVIRSRLGIDPDG--DKWKNRDDQ--- 222 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~~--- 222 (798)
.-..++|.|..|+|||+|+.++++....... .=+.++++-+++.. .+.++..++...=.....- ....+....
T Consensus 151 rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~ 230 (469)
T 2c61_A 151 RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERI 230 (469)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHH
Confidence 3457888999999999999999987621111 11356666676654 4677777776531110000 000111111
Q ss_pred ---HHHHHHHHHhc---CCcEEEEEecccC
Q 003753 223 ---GRAAEIFRRLS---NKKFALLLDDLRE 246 (798)
Q Consensus 223 ---~~~~~l~~~l~---~~r~LlVlDdv~~ 246 (798)
..+-.+.++++ ++.+|+++||+-.
T Consensus 231 ~~~~~a~tiAEyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 231 VTPRMALTAAEYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 11223445544 6999999999743
No 426
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.52 E-value=0.3 Score=46.81 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=33.7
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRS 205 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 205 (798)
..|.|-|..|+||||+++.+..... ...+..+.+..-.....+.+..++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE--QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH--HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 5799999999999999999998873 344533444333222234444555543
No 427
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.50 E-value=0.11 Score=53.19 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=22.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
++|.|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998875
No 428
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.45 E-value=0.08 Score=53.13 Aligned_cols=25 Identities=36% Similarity=0.631 Sum_probs=21.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
-.+++|+|+.|+|||||++.+..-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4689999999999999999987644
No 429
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.39 E-value=0.082 Score=52.74 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=22.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34699999999999999999987654
No 430
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.39 E-value=0.097 Score=51.82 Aligned_cols=24 Identities=42% Similarity=0.475 Sum_probs=21.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDT 174 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (798)
-.+++|+|..|+|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999874
No 431
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.37 E-value=0.083 Score=51.80 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.-.+++|+|..|+|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34699999999999999999987754
No 432
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.34 E-value=0.11 Score=48.94 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=22.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4679999999999999999987754
No 433
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.33 E-value=0.07 Score=54.12 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=20.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+|+|.|..|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998765
No 434
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.23 E-value=0.087 Score=51.78 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
-.+++|+|+.|+|||||++.++.-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999987654
No 435
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.23 E-value=0.1 Score=52.21 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDT 174 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (798)
.-.+++|+|..|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999875
No 436
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.21 E-value=0.23 Score=49.62 Aligned_cols=38 Identities=24% Similarity=0.503 Sum_probs=28.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCC
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAST 192 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 192 (798)
++|+|.|.||+||||+|..++.... +.. ..+.-|+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la--~~G-~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH--AMG-KTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH--TTT-CCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH--HCC-CcEEEEcCCC
Confidence 6788899999999999999988873 222 2455666543
No 437
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.21 E-value=0.2 Score=48.01 Aligned_cols=38 Identities=18% Similarity=0.077 Sum_probs=26.9
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCC
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAST 192 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 192 (798)
-.|.+.|.||+||||+|..+..... ...++. ..+.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~--~~G~~V-~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL--RQGVRV-MAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH--HTTCCE-EEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH--HCCCCE-EEEEeCC
Confidence 3588899999999999999888773 334444 3444443
No 438
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.19 E-value=0.14 Score=54.49 Aligned_cols=97 Identities=9% Similarity=0.104 Sum_probs=53.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhc-------CCCC-eEEEEEcCCcc-CHHHHHHHHHHHcCCCCC---CCccc
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMS-------HKFG-AVIMVKASTEL-NIEKIQDVIRSRLGIDPD---GDKWK 217 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~---~~~~~ 217 (798)
.-..++|.|..|+|||+|+.++++...... ++-+ .++++-+++.. .+.++..++.+.=..... -...+
T Consensus 146 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d 225 (464)
T 3gqb_B 146 RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKAD 225 (464)
T ss_dssp TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETT
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCC
Confidence 345688999999999999999988752100 1222 56666676554 466676665542100000 00001
Q ss_pred cCCHH-----HHHHHHHHHhc---CCcEEEEEecccC
Q 003753 218 NRDDQ-----GRAAEIFRRLS---NKKFALLLDDLRE 246 (798)
Q Consensus 218 ~~~~~-----~~~~~l~~~l~---~~r~LlVlDdv~~ 246 (798)
..... ..+-.+.++++ ++.+|+++||+-.
T Consensus 226 ~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 226 DPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 11111 11223445543 6899999999854
No 439
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.16 E-value=0.089 Score=52.33 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
-.+++|+|+.|+|||||++.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4699999999999999999987654
No 440
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.16 E-value=0.088 Score=52.59 Aligned_cols=26 Identities=35% Similarity=0.598 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34699999999999999999987654
No 441
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.15 E-value=0.09 Score=52.39 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44699999999999999999987654
No 442
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.14 E-value=0.077 Score=51.05 Aligned_cols=25 Identities=32% Similarity=0.634 Sum_probs=21.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
-.+++|+|+.|+|||||++.++.-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999987654
No 443
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.13 E-value=0.11 Score=52.51 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=22.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++|.|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999997765
No 444
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.12 E-value=0.097 Score=51.57 Aligned_cols=26 Identities=35% Similarity=0.485 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.-.+++|+|..|+|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44799999999999999999987653
No 445
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.11 E-value=0.09 Score=51.27 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=22.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
-.+++|+|+.|+|||||++.++.-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999997764
No 446
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.08 E-value=0.46 Score=44.88 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=30.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHH
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIR 204 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 204 (798)
.|+|=|.-|+||||.++.+++... ....+. ++..-.......+..+.++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~--~~g~~v-~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE--KRGKKV-ILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH--HTTCCE-EEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--HCCCcE-EEEECCCCCcHHHHHHHHh
Confidence 478889999999999999999883 233333 3333222223444444444
No 447
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.08 E-value=0.14 Score=51.07 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...++.+.|.||+||||++.++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998776
No 448
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.99 E-value=0.63 Score=50.18 Aligned_cols=51 Identities=10% Similarity=0.061 Sum_probs=35.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSR 206 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 206 (798)
-.++.|.|.+|+||||+|.+++..... . =..++|++... +..++...++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~--~-g~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSD--N-DDVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHH--T-TCEEEEECSSS--CTTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHH--c-CCEEEEEECCC--CHHHHHHHHHHH
Confidence 468999999999999999999887732 2 23567765443 444555555443
No 449
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.96 E-value=0.096 Score=51.95 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=22.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34699999999999999999987654
No 450
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.95 E-value=0.097 Score=51.69 Aligned_cols=25 Identities=40% Similarity=0.643 Sum_probs=22.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
-.+++|+|..|+|||||++.++.-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987654
No 451
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.95 E-value=0.38 Score=46.07 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=26.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeE
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAV 185 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~ 185 (798)
...|.|.|+.|+||||+++.+..... ...+..+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~v~ 38 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR--ERGIEVQ 38 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCcc
Confidence 36899999999999999999998873 3445553
No 452
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.94 E-value=0.69 Score=50.27 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=41.1
Q ss_pred HHHHhhc-CCceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccC-HHHHHHHH
Q 003753 142 VWRYIED-DGVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELN-IEKIQDVI 203 (798)
Q Consensus 142 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i 203 (798)
+++.|.. ..-..++|.|..|+|||+|+.++.+.. +-+.++++-+++..+ +.++..++
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 3444422 344689999999999999999987653 235788888887665 66666665
No 453
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.91 E-value=0.1 Score=53.47 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=22.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++|.|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4699999999999999999997765
No 454
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.84 E-value=0.13 Score=51.18 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.7
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..-.+++|+|+.|+|||||++.+....
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 445799999999999999999988766
No 455
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.77 E-value=0.14 Score=51.81 Aligned_cols=26 Identities=31% Similarity=0.301 Sum_probs=23.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..++|.|.|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999998775
No 456
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.74 E-value=0.1 Score=51.46 Aligned_cols=25 Identities=40% Similarity=0.553 Sum_probs=22.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
-.+++|+|+.|+|||||++.++.-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999987765
No 457
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.72 E-value=0.13 Score=52.49 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=21.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDT 174 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (798)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999774
No 458
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.72 E-value=0.43 Score=45.25 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=30.3
Q ss_pred eEEEEE-ecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHH
Q 003753 152 KIIGLY-GVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIE 197 (798)
Q Consensus 152 ~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 197 (798)
++|+|+ +.||+||||+|..++..... .-..+..++.....+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~---~g~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSR---SGYNIAVVDTDPQMSLT 45 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHH---TTCCEEEEECCTTCHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHH---CCCeEEEEECCCCCCHH
Confidence 678887 68999999999999888742 22346667766544433
No 459
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.70 E-value=0.22 Score=50.53 Aligned_cols=39 Identities=26% Similarity=0.479 Sum_probs=28.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCC
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKAST 192 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 192 (798)
.++|+|.|.||+||||+|..++..... .. ..+.-|+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~--~G-~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAE--MG-KKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHH--TT-CCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHH--CC-CeEEEEecCC
Confidence 478889999999999999999887742 22 2455565543
No 460
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.70 E-value=0.21 Score=54.60 Aligned_cols=44 Identities=16% Similarity=-0.030 Sum_probs=33.3
Q ss_pred ccchhHHHHHHHHHh--hcCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 132 IVGIESRLSEVWRYI--EDDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 132 ~vGr~~~~~~l~~~L--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.+.|.+-.+.+.+.. ......+|.+.|+.|+||||+|+.+....
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 445555555555554 22355799999999999999999999987
No 461
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.64 E-value=0.52 Score=51.15 Aligned_cols=50 Identities=10% Similarity=0.118 Sum_probs=35.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIR 204 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 204 (798)
-.++.|.|.+|+||||||.+++...... .-..++|++... +..++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCC--CHHHHHHHHH
Confidence 4699999999999999999998876321 123577776543 4456666554
No 462
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.63 E-value=0.21 Score=53.15 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=22.9
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHH
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDT 174 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (798)
....+++|+|..|+|||||.+.+...
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 34579999999999999999999874
No 463
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.63 E-value=0.11 Score=51.82 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.-.+++|+|..|+|||||++.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34699999999999999999987654
No 464
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.62 E-value=0.11 Score=52.16 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.-.+++|+|..|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999987654
No 465
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.54 E-value=0.16 Score=49.69 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=23.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 466
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.54 E-value=0.13 Score=52.13 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.5
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 445799999999999999999988765
No 467
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.53 E-value=0.11 Score=51.44 Aligned_cols=25 Identities=40% Similarity=0.535 Sum_probs=22.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
-.+++|+|+.|+|||||++.++.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999987654
No 468
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.52 E-value=0.11 Score=51.93 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=22.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.-.+++|+|..|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34699999999999999999987654
No 469
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.51 E-value=0.11 Score=52.26 Aligned_cols=26 Identities=42% Similarity=0.479 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999987654
No 470
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.47 E-value=0.26 Score=54.62 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=23.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...+++|+|+.|+|||||++.+....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 44799999999999999999999887
No 471
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.46 E-value=0.14 Score=51.20 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=21.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998865
No 472
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.45 E-value=0.14 Score=48.49 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDT 174 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (798)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999998775
No 473
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.39 E-value=0.17 Score=45.78 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.5
Q ss_pred eEEEEEecCCchHHHHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDT 174 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (798)
+.|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998765
No 474
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.35 E-value=0.42 Score=50.98 Aligned_cols=28 Identities=32% Similarity=0.234 Sum_probs=24.5
Q ss_pred cCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 148 DDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 148 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...-.+++|+|+.|+||||+++.+....
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 3455799999999999999999998876
No 475
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.34 E-value=0.27 Score=53.01 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=52.9
Q ss_pred CCceEEEEEecCCchHHHHHH-HHHHHhhhhcCCCCe-EEEEEcCCcc-CHHHHHHHHHHHcCCCCCC--CccccCCHHH
Q 003753 149 DGVKIIGLYGVRGVGKSTLLK-QLNDTFSDMSHKFGA-VIMVKASTEL-NIEKIQDVIRSRLGIDPDG--DKWKNRDDQG 223 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~f~~-~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~ 223 (798)
+.-..++|.|..|+|||+||. .+.+.. ..+. ++++-+++.. .+.++.+.+...=...... ....+.....
T Consensus 173 grGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~ 247 (515)
T 2r9v_A 173 GRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASL 247 (515)
T ss_dssp ETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHH
T ss_pred ccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHH
Confidence 344679999999999999964 666653 2453 4667777654 4667777776521110000 0001111111
Q ss_pred ------HHHHHHHHh--cCCcEEEEEecccC
Q 003753 224 ------RAAEIFRRL--SNKKFALLLDDLRE 246 (798)
Q Consensus 224 ------~~~~l~~~l--~~~r~LlVlDdv~~ 246 (798)
....+.+++ +++.+|+++||+-.
T Consensus 248 r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 248 QYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 112333444 46999999999754
No 476
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.27 E-value=0.14 Score=46.76 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=20.5
Q ss_pred eEEEEEecCCchHHHHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDT 174 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (798)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998764
No 477
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.23 E-value=0.15 Score=52.46 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=23.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..++++|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999999988653
No 478
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.21 E-value=0.51 Score=51.32 Aligned_cols=42 Identities=21% Similarity=0.368 Sum_probs=31.4
Q ss_pred chhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHhh
Q 003753 134 GIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTFS 176 (798)
Q Consensus 134 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (798)
+....++.+...+.++. +.+.|.|.+|+||||++..+.....
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34455555555665443 4899999999999999999888773
No 479
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.19 E-value=0.19 Score=49.44 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=22.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
...|+|.|..|+||||+++.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998876
No 480
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.13 E-value=0.69 Score=49.68 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=52.8
Q ss_pred CCceEEEEEecCCchHHHHH-HHHHHHhhhhcCCCC-eEEEEEcCCcc-CHHHHHHHHHHHcCCCCCC--CccccCCHHH
Q 003753 149 DGVKIIGLYGVRGVGKSTLL-KQLNDTFSDMSHKFG-AVIMVKASTEL-NIEKIQDVIRSRLGIDPDG--DKWKNRDDQG 223 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~ 223 (798)
+.-..++|.|..|+|||+|| ..+.+.. .-+ .++++-+++.. .+.++..++.+.=.....- ....+.....
T Consensus 160 grGQR~~Ifg~~g~GKT~l~l~~I~n~~-----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~ 234 (513)
T 3oaa_A 160 GRGQRELIIGDRQTGKTALAIDAIINQR-----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAAL 234 (513)
T ss_dssp BTTCBCEEEESSSSSHHHHHHHHHHTTS-----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHH
T ss_pred ccCCEEEeecCCCCCcchHHHHHHHhhc-----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHH
Confidence 34467899999999999997 4565542 233 35777787764 4677777765532111000 0001111111
Q ss_pred H------HHHHHHHh--cCCcEEEEEecccC
Q 003753 224 R------AAEIFRRL--SNKKFALLLDDLRE 246 (798)
Q Consensus 224 ~------~~~l~~~l--~~~r~LlVlDdv~~ 246 (798)
. ...+.+++ +++.+|+++||+-.
T Consensus 235 r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 235 QYLAPYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 1 11223333 57999999999854
No 481
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.13 E-value=0.39 Score=46.27 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=24.7
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhh
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTFS 176 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 176 (798)
.....|.|.|..|+||||+++.+.+...
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999999998873
No 482
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.09 E-value=0.39 Score=59.88 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=59.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCc-cccCCHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDK-WKNRDDQGRAAEI 228 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l 228 (798)
.-+++.|.|.+|+||||||.+++..... .-..++|++....++.. .++.++.+.+.-. ....+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~---~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---hCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 3469999999999999999999877632 23478899888877653 2566766542111 1223455555555
Q ss_pred HHHhc-CCcEEEEEecccCc
Q 003753 229 FRRLS-NKKFALLLDDLRER 247 (798)
Q Consensus 229 ~~~l~-~~r~LlVlDdv~~~ 247 (798)
....+ .+.-++|+|.+...
T Consensus 454 ~~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTC
T ss_pred HHHHHhcCCCEEEECCHHHh
Confidence 55443 35569999997643
No 483
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.08 E-value=0.15 Score=47.79 Aligned_cols=25 Identities=28% Similarity=0.129 Sum_probs=21.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
-+.|.|.|..|+||||||..+..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678999999999999999987654
No 484
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.07 E-value=0.28 Score=45.98 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=22.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999987653
No 485
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.06 E-value=0.13 Score=55.18 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.5
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456899999999999999999987654
No 486
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.00 E-value=0.36 Score=47.53 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=28.8
Q ss_pred EEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCH
Q 003753 154 IGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNI 196 (798)
Q Consensus 154 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 196 (798)
|+|.|.||+||||+|..++..... .. ..+.-|+.....+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~--~g-~~VlliD~D~~~~l 42 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMAS--DY-DKIYAVDGDPDSCL 42 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTT--TC-SCEEEEEECTTSCH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH--CC-CeEEEEeCCCCcCh
Confidence 667999999999999999888732 22 45666665544443
No 487
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.97 E-value=0.4 Score=51.65 Aligned_cols=93 Identities=14% Similarity=0.112 Sum_probs=53.4
Q ss_pred CCceEEEEEecCCchHHHHHH-HHHHHhhhhcCCCCe-EEEEEcCCcc-CHHHHHHHHHHHcCCCCCC--CccccCCHHH
Q 003753 149 DGVKIIGLYGVRGVGKSTLLK-QLNDTFSDMSHKFGA-VIMVKASTEL-NIEKIQDVIRSRLGIDPDG--DKWKNRDDQG 223 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~f~~-~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~ 223 (798)
+.-..++|.|..|+|||+||. .+.+.. .-+. ++++-+++.. .+.++.+.+...=...... ....+.....
T Consensus 160 grGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~ 234 (502)
T 2qe7_A 160 GRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPL 234 (502)
T ss_dssp BTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHH
T ss_pred ccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHH
Confidence 344678999999999999964 666654 2453 4667777654 4667777776532111100 0001111111
Q ss_pred H------HHHHHHHh--cCCcEEEEEecccC
Q 003753 224 R------AAEIFRRL--SNKKFALLLDDLRE 246 (798)
Q Consensus 224 ~------~~~l~~~l--~~~r~LlVlDdv~~ 246 (798)
. ...+.+++ +++.+|+++||+-.
T Consensus 235 r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 235 LYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 1 12333444 46999999999754
No 488
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.95 E-value=0.3 Score=51.29 Aligned_cols=27 Identities=22% Similarity=0.142 Sum_probs=23.6
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
....+++|+|+.|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445799999999999999999998764
No 489
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.83 E-value=0.12 Score=50.44 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDT 174 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~ 174 (798)
...+|+|.|..|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3579999999999999999988654
No 490
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.75 E-value=0.2 Score=52.60 Aligned_cols=24 Identities=50% Similarity=0.697 Sum_probs=22.3
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
++|+|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 689999999999999999998876
No 491
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.71 E-value=0.14 Score=50.93 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDT 174 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~ 174 (798)
-.+++|+|..|+|||||++.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999988654
No 492
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=89.64 E-value=0.32 Score=52.41 Aligned_cols=91 Identities=12% Similarity=0.134 Sum_probs=50.5
Q ss_pred ceEEEEEecCCchHHHHHH-HHHHHhhhhcCCCC-eEEEEEcCCcc-CHHHHHHHHHHHcCC--------CCCCCccccC
Q 003753 151 VKIIGLYGVRGVGKSTLLK-QLNDTFSDMSHKFG-AVIMVKASTEL-NIEKIQDVIRSRLGI--------DPDGDKWKNR 219 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~--------~~~~~~~~~~ 219 (798)
-..++|.|..|+|||+||. .+.+.. ..+ .++++-+++.. .+.++.+.+...=.. ..+++.....
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ-----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC-----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 4578999999999999964 666653 235 35667777654 356666665442100 0000000001
Q ss_pred CHHHHHHHHHHHh--cCCcEEEEEecccC
Q 003753 220 DDQGRAAEIFRRL--SNKKFALLLDDLRE 246 (798)
Q Consensus 220 ~~~~~~~~l~~~l--~~~r~LlVlDdv~~ 246 (798)
-.......+.+++ +++.+|+++||+-.
T Consensus 238 ~a~~~a~tiAEyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 238 LAPYTGAALAEYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 1111222233333 57999999999743
No 493
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.60 E-value=0.18 Score=45.60 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58899999999999999987653
No 494
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.58 E-value=0.16 Score=47.50 Aligned_cols=22 Identities=45% Similarity=0.599 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHHHH
Q 003753 153 IIGLYGVRGVGKSTLLKQLNDT 174 (798)
Q Consensus 153 vi~I~G~gGiGKTtLa~~v~~~ 174 (798)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998763
No 495
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.49 E-value=0.15 Score=51.84 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=22.8
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 149 DGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 149 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
..-.+++|+|..|+|||||++.+..-.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 345699999999999999999986644
No 496
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.47 E-value=0.18 Score=52.46 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=22.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 003753 150 GVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 150 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34689999999999999999997754
No 497
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.47 E-value=0.47 Score=59.20 Aligned_cols=89 Identities=17% Similarity=0.168 Sum_probs=62.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhhhcCCCCeEEEEEcCCccCHHHHHHHHHHHcCCCCCCCcc-ccCCHHHHHHHHH
Q 003753 151 VKIIGLYGVRGVGKSTLLKQLNDTFSDMSHKFGAVIMVKASTELNIEKIQDVIRSRLGIDPDGDKW-KNRDDQGRAAEIF 229 (798)
Q Consensus 151 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~l~ 229 (798)
-++|-|+|+.|+||||||.++.... ++.=...+|+.+....+..- ++.+|...+.-.. ....-++....+.
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 4799999999999999999988765 34446789999888877653 7788877643221 2223344555555
Q ss_pred HHhcC-CcEEEEEecccCc
Q 003753 230 RRLSN-KKFALLLDDLRER 247 (798)
Q Consensus 230 ~~l~~-~r~LlVlDdv~~~ 247 (798)
..++. ..-++|+|-|...
T Consensus 1503 ~~~~s~~~~~vvvDsv~al 1521 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVAAL 1521 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTC
T ss_pred HHHHcCCCCEEEEccHHhC
Confidence 55554 5669999988643
No 498
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.43 E-value=0.22 Score=47.43 Aligned_cols=42 Identities=21% Similarity=0.147 Sum_probs=21.5
Q ss_pred chhHHHHHHHHHhhcCCceEEEEEecCCchHHHHHHHHHHHh
Q 003753 134 GIESRLSEVWRYIEDDGVKIIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 134 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
|+....+.+.+.......-.|+|+|.+|+|||||+..+.+..
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 444444444444444455678999999999999998887643
No 499
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=89.41 E-value=0.1 Score=58.79 Aligned_cols=46 Identities=20% Similarity=0.087 Sum_probs=33.6
Q ss_pred CcccchhHHHHHHHHHhhcCCce-----------EEEEEecCCchHHHHHHHHHHHh
Q 003753 130 NNIVGIESRLSEVWRYIEDDGVK-----------IIGLYGVRGVGKSTLLKQLNDTF 175 (798)
Q Consensus 130 ~~~vGr~~~~~~l~~~L~~~~~~-----------vi~I~G~gGiGKTtLa~~v~~~~ 175 (798)
+.++|.+..+..+.-.|..+..+ -|.++|.+|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 46778887766665555433212 58899999999999999887654
No 500
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.21 E-value=0.21 Score=46.56 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=20.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHH
Q 003753 152 KIIGLYGVRGVGKSTLLKQLNDT 174 (798)
Q Consensus 152 ~vi~I~G~gGiGKTtLa~~v~~~ 174 (798)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999764
Done!