Query 003754
Match_columns 798
No_of_seqs 231 out of 1259
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 11:28:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003754.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003754hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06464 phosphoenolpyruvate s 100.0 9.2E-51 2E-55 485.1 30.4 289 480-797 3-333 (795)
2 PRK06241 phosphoenolpyruvate s 100.0 1E-49 2.3E-54 482.0 30.3 278 481-797 2-311 (871)
3 TIGR01418 PEP_synth phosphoeno 100.0 3.1E-49 6.7E-54 472.2 30.4 287 483-797 1-331 (782)
4 PF01326 PPDK_N: Pyruvate phos 100.0 3.9E-50 8.4E-55 438.3 4.6 269 493-798 4-303 (327)
5 PRK05878 pyruvate phosphate di 100.0 2.4E-40 5.1E-45 378.6 20.0 246 479-797 4-297 (530)
6 COG0574 PpsA Phosphoenolpyruva 100.0 4.9E-38 1.1E-42 374.8 17.2 278 483-797 4-320 (740)
7 TIGR01828 pyru_phos_dikin pyru 100.0 6.3E-36 1.4E-40 358.7 21.1 242 482-797 2-337 (856)
8 PRK09279 pyruvate phosphate di 100.0 1.2E-32 2.5E-37 329.6 24.0 242 481-797 3-343 (879)
9 PRK05849 hypothetical protein; 99.9 3.7E-27 8.1E-32 279.8 18.5 193 492-798 5-216 (783)
10 PRK05849 hypothetical protein; 96.8 0.018 3.8E-07 70.6 15.1 175 267-448 571-780 (783)
11 PRK06241 phosphoenolpyruvate s 96.7 0.054 1.2E-06 67.6 18.3 174 266-450 651-868 (871)
12 PF00391 PEP-utilizers: PEP-ut 96.4 0.0036 7.8E-08 55.3 4.2 68 373-444 9-78 (80)
13 PRK08296 hypothetical protein; 96.3 0.0072 1.6E-07 71.9 7.4 96 348-450 504-601 (603)
14 PRK05865 hypothetical protein; 94.8 0.086 1.9E-06 65.4 9.1 94 349-451 741-837 (854)
15 TIGR01418 PEP_synth phosphoeno 94.8 0.046 9.9E-07 67.4 6.6 95 344-445 355-451 (782)
16 PRK06354 pyruvate kinase; Prov 94.6 0.045 9.8E-07 65.2 5.6 92 350-448 489-582 (590)
17 PRK06464 phosphoenolpyruvate s 94.5 0.045 9.8E-07 67.5 5.4 98 345-450 358-461 (795)
18 PRK05878 pyruvate phosphate di 94.4 0.072 1.6E-06 62.8 6.5 100 343-449 350-452 (530)
19 PRK11377 dihydroxyacetone kina 94.3 0.068 1.5E-06 62.2 6.0 67 373-449 395-470 (473)
20 TIGR01828 pyru_phos_dikin pyru 93.9 0.076 1.6E-06 66.0 5.7 105 345-452 390-505 (856)
21 PRK09279 pyruvate phosphate di 93.4 0.075 1.6E-06 66.0 4.6 106 345-453 396-512 (879)
22 PRK11177 phosphoenolpyruvate-p 91.9 0.22 4.9E-06 59.4 5.6 77 373-453 153-232 (575)
23 TIGR01417 PTS_I_fam phosphoeno 91.4 0.26 5.7E-06 58.7 5.6 77 373-453 152-231 (565)
24 COG3848 Phosphohistidine swive 90.9 0.28 6E-06 45.5 3.9 98 346-450 5-104 (111)
25 PRK11061 fused phosphoenolpyru 90.1 0.37 8.1E-06 59.3 5.4 76 373-454 320-399 (748)
26 COG1080 PtsA Phosphoenolpyruva 89.3 0.58 1.3E-05 55.2 5.8 71 373-453 154-233 (574)
27 PRK03955 hypothetical protein; 79.1 6.8 0.00015 38.2 7.1 95 347-449 6-127 (131)
28 COG3605 PtsP Signal transducti 68.0 3.9 8.4E-05 48.5 2.9 79 369-452 323-405 (756)
29 COG0574 PpsA Phosphoenolpyruva 66.6 2.5 5.5E-05 52.1 1.1 107 307-422 305-413 (740)
30 PF02786 CPSase_L_D2: Carbamoy 51.0 28 0.0006 36.5 5.5 45 748-797 131-179 (211)
31 PF07067 DUF1340: Protein of u 46.6 1.1E+02 0.0023 31.8 8.5 61 201-278 148-208 (236)
32 COG5424 Pyrroloquinoline quino 45.6 26 0.00057 37.4 4.3 26 64-90 91-117 (242)
33 KOG2122 Beta-catenin-binding p 32.3 4.8E+02 0.01 35.2 12.6 152 169-336 360-522 (2195)
34 PF14475 Mso1_Sec1_bdg: Sec1-b 30.6 44 0.00095 26.3 2.3 21 44-64 14-34 (41)
35 PF12280 BSMAP: Brain specific 25.7 43 0.00093 35.2 2.0 20 779-798 92-115 (207)
36 COG3160 Rsd Regulator of sigma 21.8 2.7E+02 0.0058 27.8 6.3 13 51-63 56-68 (162)
No 1
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=9.2e-51 Score=485.10 Aligned_cols=289 Identities=24% Similarity=0.379 Sum_probs=240.2
Q ss_pred CCceeEeCCCCC---CCCcCHHhHHHHHHhhhCC-CCccCCCceEeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChH
Q 003754 480 RGKYAVSVEDFT---PDMVGAKSCNIKFLRERVP-SWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLS 555 (798)
Q Consensus 480 ~~~~vl~l~e~~---~~~vGgKAanL~~L~~~~p-~g~~VP~GfvIpfgafe~fL~~~~~~~l~~~I~~l~~~l~~~d~~ 555 (798)
++++++||.++. ...|||||+||++|++.++ .|+|||+|||||+++|++||+.+ ++.+.|..+.+.++.++..
T Consensus 3 ~~~~i~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~pVP~gfvIt~~af~~fl~~~---~l~~~i~~~l~~~~~~d~~ 79 (795)
T PRK06464 3 MMKYVLWFEELGMEDVPLVGGKNASLGEMISNLSGAGVPVPPGFATTAEAYRYFLEQT---GLNEKIYELLDGLDVDDVD 79 (795)
T ss_pred CCceeeehhHcCcccccccChHHHHHHHHHhhhhccCCCCCCeEEECHHHHHHHHHhC---ChHHHHHHHHhhcCcCCHH
Confidence 456889988875 5679999999999998655 59999999999999999999998 7778887777666666655
Q ss_pred HH----HHHHHHHHcCCCCHHHHHHHHHHHH--------------hhC-------CCCCCCc-------cHHHHHHHHHH
Q 003754 556 KL----QEIQEAVLQMSAPLSLIYELKNKMR--------------SSG-------MPWPGDE-------GWNLAWRSIKK 603 (798)
Q Consensus 556 ~L----~~Ir~~I~~~~lP~el~~eL~~a~r--------------Ssg-------~s~aG~~-------~~e~l~~AIk~ 603 (798)
.+ ++||++|++.++|+++.++|..+++ ||+ .||||+| +.+++++|||+
T Consensus 80 ~l~~~~~~ir~~i~~~~~P~~l~~~l~~a~~~l~~~~g~~~vaVRSSa~~ED~~~~SfAGq~~t~l~v~~~~~l~~AIk~ 159 (795)
T PRK06464 80 ALAKAGAQIRQLIIDTPFPPDLEQEIREAYAKLSAGYGEASVAVRSSATAEDLPDASFAGQQETFLNVRGIDDVLEAVKE 159 (795)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCceEEEECCCcccCCCCCCCCCccceecCCCCHHHHHHHHHH
Confidence 43 7999999999999999999998764 332 3689987 37999999999
Q ss_pred HHhcCCChHHHHHHHHcCCCCcccceeEEEEeecCCc--eeEEEEecCCCCCCCCcEEEEeecCCccccccccCCCCceE
Q 003754 604 VWASKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSF 681 (798)
Q Consensus 604 VWASly~~RAv~yR~~~Gi~~~~~~MAVLVQemV~a~--~SGVlfT~nP~tg~~~~i~Iea~~GLGE~lVsG~~G~p~~f 681 (798)
||||+||+||+.||+++|++++++.|||+||+||+++ +|||+||+||.+++.++++|+++|||||+||+|.+ +||+|
T Consensus 160 v~aS~~~~rA~~YR~~~gi~~~~~~mAVlVQ~Mv~a~~~~SGV~fT~dP~~g~~~~~~I~a~~GlGe~vVsG~v-~pd~~ 238 (795)
T PRK06464 160 CFASLFTDRAISYRVHQGFDHFKVALSAGVQKMVRSDLAASGVMFTLDTESGFRDVVFITASWGLGEMVVQGAV-NPDEF 238 (795)
T ss_pred HHHccCCHHHHHHHHHcCCCchhcceeEEEEEccCCCcCceEEEEecCCCCCCCCeEEEEEccCCCcccccCCc-cCeEE
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999987 89999
Q ss_pred EEecCCCC--CCccccccccccccCCCceeEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHH
Q 003754 682 VTKKNNLK--SPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSV 759 (798)
Q Consensus 682 ~v~k~~~~--~~~vl~~~sk~v~~~~~~~~i~~sds~gedle~~ag~Gl~~svp~~~~~~~~vdy~~~p~L~D~~~r~~~ 759 (798)
+++|.+.. ...++ ++.++.+ ...+..+..| +.|+ ..++++++. ++.|+|+|++
T Consensus 239 ~v~~~~~~~~~~~i~---~~~i~~K---~~~~~~~~~~-------~~~~-~~~~~~~~~------~~~~~L~~~~----- 293 (795)
T PRK06464 239 YVHKPTLKAGKPAIV---RRTLGSK---KIKMVYDDGG-------EHGV-KTVDVPEEE------RNRFSLTDEE----- 293 (795)
T ss_pred EEeccccccccccee---eeecccc---ceeeeeccCC-------CCce-eEEeCCHHH------hhccCCCHHH-----
Confidence 99987532 11122 4555553 2222222111 1223 355555433 4679999987
Q ss_pred HHHHHHHHHHHHHhcCCCeeEEEEEEC--CEEEEEeeccC
Q 003754 760 FSKIAETGKIIESLYGYPQDIEGVLKD--GLIYVVQARPQ 797 (798)
Q Consensus 760 l~~La~la~~IE~~fG~PQDIEwai~~--g~LyIlQaRP~ 797 (798)
+++|++++.+||++||+|||||||+++ |+|||||+||+
T Consensus 294 l~~La~l~~~lE~~fg~pqDIEWai~~~~g~l~ILQaRPi 333 (795)
T PRK06464 294 VLELAKQAVIIEKHYGRPMDIEWAKDGDDGKLYIVQARPE 333 (795)
T ss_pred HHHHHHHHHHHHHHhCCCceeEEEEECCCCcEEEEEeecc
Confidence 899999999999999999999999987 99999999997
No 2
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=1e-49 Score=482.01 Aligned_cols=278 Identities=23% Similarity=0.418 Sum_probs=229.1
Q ss_pred CceeEeCCCCC---CCCcCHHhHHHHHHhhhCCCCccCCCceEeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChH--
Q 003754 481 GKYAVSVEDFT---PDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLS-- 555 (798)
Q Consensus 481 ~~~vl~l~e~~---~~~vGgKAanL~~L~~~~p~g~~VP~GfvIpfgafe~fL~~~~~~~l~~~I~~l~~~l~~~d~~-- 555 (798)
.++++++.++. ...|||||+||++|.+ .||+||+|||||+++|++||+.+ ++.+.|....+.++..+..
T Consensus 2 ~~~v~~l~~~~~~~~~~vGgKa~~L~~L~~---~G~~VP~gfvi~~~~~~~~l~~~---~~~~~i~~~l~~~~~~~~~~~ 75 (871)
T PRK06241 2 SSYVLDFQEIDKTQLPLVGGKGANLGELSR---AGIPVPEGFCVTTEAYKKFLEQN---EEFDALLDQLSALKLEDREQI 75 (871)
T ss_pred CceEEEhhhcCcccccccChHHHHHHHHHH---CCCCCCCeEEecHHHHHHHHHhC---CcHHHHHHHHhcCCCCCHHHH
Confidence 45788888765 4679999999999998 69999999999999999999987 4434443333344444433
Q ss_pred --HHHHHHHHHHcCCCCHHHHHHHHHHH-----------HhhC-------CCCCCCc-------cHHHHHHHHHHHHhcC
Q 003754 556 --KLQEIQEAVLQMSAPLSLIYELKNKM-----------RSSG-------MPWPGDE-------GWNLAWRSIKKVWASK 608 (798)
Q Consensus 556 --~L~~Ir~~I~~~~lP~el~~eL~~a~-----------rSsg-------~s~aG~~-------~~e~l~~AIk~VWASl 608 (798)
..++||++|++.++|+++.++|.+++ |||+ .||||++ +.+++++|||+||||+
T Consensus 76 ~~~~~~ir~~i~~~~~p~~l~~~l~~a~~~~~~~~~~aVRSSa~~ED~~~~SfAGq~~t~l~v~~~~~~~~ai~~~waS~ 155 (871)
T PRK06241 76 GEISAKIREVIEAIEIPEDIVEAIAAALSKFGEDHAYAVRSSATAEDLPTASFAGQQDTYLNVIGKDAILQHIRKCWASL 155 (871)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCccCCCCCCCccccccccCCCCHHHHHHHHHHHHHhc
Confidence 34799999999999999999999876 4443 3689987 4799999999999999
Q ss_pred CChHHHHHHHHcCCCCcccceeEEEEeecCCceeEEEEecCCCCCCCCcEEEEeecCCccccccccCCCCceEEEecCCC
Q 003754 609 WNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNL 688 (798)
Q Consensus 609 y~~RAv~yR~~~Gi~~~~~~MAVLVQemV~a~~SGVlfT~nP~tg~~~~i~Iea~~GLGE~lVsG~~G~p~~f~v~k~~~ 688 (798)
||+||+.||+++|++++++.|||+||+||++++|||+||+||.+++.+.++|+++|||||+||+|.+ +||.|++++ +
T Consensus 156 ~~~ra~~Yr~~~g~~~~~~~maV~vQ~mv~~~~sGV~ft~~P~~~~~~~~~I~a~~GlGe~vV~G~v-~pd~~~v~~--~ 232 (871)
T PRK06241 156 FTERAVIYRIQNGFDHRKVYMSVVVQKMVFPEASGIMFTADPVTGNRKVLSIDASFGLGEALVSGLV-SADTYKVRE--G 232 (871)
T ss_pred cCHHHHHHHHHcCCCchhcceEEEEEeccccccceEEEecCCCCCCCCEEEEEEecCCChhhhcCcc-CCeEEEEeC--C
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 899999992 2
Q ss_pred CCCccccccccccccCCCceeEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHHHHHHHHHHH
Q 003754 689 KSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGK 768 (798)
Q Consensus 689 ~~~~vl~~~sk~v~~~~~~~~i~~sds~gedle~~ag~Gl~~svp~~~~~~~~vdy~~~p~L~D~~~r~~~l~~La~la~ 768 (798)
.++ ++.++.+ ...++... ++|+ ..+++++. .++.|+|+|++ +.+|+++|.
T Consensus 233 ---~i~---~~~i~~k--~~~~~~~~----------~gg~-~~~~~~~~------~~~~~~L~~~~-----~~~L~~l~~ 282 (871)
T PRK06241 233 ---KII---DKTIATK--KLAIYALK----------EGGT-ETKEIEPE------QQKSQTLTDEQ-----ILELARLGR 282 (871)
T ss_pred ---ceE---EEecccc--ceEEEecC----------CCce-EEEECCHH------HhcCCCCCHHH-----HHHHHHHHH
Confidence 232 5555553 22222222 2243 33444432 23578999887 899999999
Q ss_pred HHHHhcCCCeeEEEEEECCEEEEEeeccC
Q 003754 769 IIESLYGYPQDIEGVLKDGLIYVVQARPQ 797 (798)
Q Consensus 769 ~IE~~fG~PQDIEwai~~g~LyIlQaRP~ 797 (798)
+||++||+|||||||+++|+|||||+||+
T Consensus 283 ~ie~~~g~pqDIEw~~~~~~l~ilQaRPi 311 (871)
T PRK06241 283 KIEAHFGCPQDIEWCLADGTFYILQSRPI 311 (871)
T ss_pred HHHHHcCCCcceEEEEECCEEEEEEcCCc
Confidence 99999999999999999999999999997
No 3
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=100.00 E-value=3.1e-49 Score=472.20 Aligned_cols=287 Identities=26% Similarity=0.418 Sum_probs=233.9
Q ss_pred eeEeCCCCC---CCCcCHHhHHHHHHhhhC-CCCccCCCceEeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChHH--
Q 003754 483 YAVSVEDFT---PDMVGAKSCNIKFLRERV-PSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSK-- 556 (798)
Q Consensus 483 ~vl~l~e~~---~~~vGgKAanL~~L~~~~-p~g~~VP~GfvIpfgafe~fL~~~~~~~l~~~I~~l~~~l~~~d~~~-- 556 (798)
+++||+++. ...|||||+||++|++.+ ..|++||+|||||+++|++||+.+ ++.+.|..+.+.++.++.+.
T Consensus 1 ~~~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~~VP~gfvIt~~af~~fl~~~---~l~~~i~~~l~~~~~~~~~~l~ 77 (782)
T TIGR01418 1 LILWLEEVRKDDVPLVGGKNASLGEMIQNLSPAGVPVPPGFVVTAEAYRYFLEEN---GIAQKIRDLLEELDVEDSEALA 77 (782)
T ss_pred CeeehhhcCcccccccChHHHHHHHHHhhhhhcCCCCCCeEEEcHHHHHHHHHhC---ChHHHHHHHHHhcCcCCHHHHH
Confidence 467777765 567999999999999732 248999999999999999999988 77777777666666666543
Q ss_pred --HHHHHHHHHcCCCCHHHHHHHHHHHH----------------hhC-------CCCCCCc-------cHHHHHHHHHHH
Q 003754 557 --LQEIQEAVLQMSAPLSLIYELKNKMR----------------SSG-------MPWPGDE-------GWNLAWRSIKKV 604 (798)
Q Consensus 557 --L~~Ir~~I~~~~lP~el~~eL~~a~r----------------Ssg-------~s~aG~~-------~~e~l~~AIk~V 604 (798)
.++||++|++.++|+++.++|.++++ ||+ .||||+| +.+++.+|||+|
T Consensus 78 ~~~~~ir~~i~~~~lP~~l~~~l~~a~~~l~~~~g~~~~~vaVRSSa~~ED~~~~SfAGq~~s~l~v~~~~~l~~aik~v 157 (782)
T TIGR01418 78 AASAEIRELILNTPFPPDLEEAIREAYDKLSEDYGKEEADVAVRSSATAEDLPDASFAGQQETYLNVTGEEEVLEHVKKC 157 (782)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhcCCcCceEEEECCCCCCCCCCCCcccceeeeecCCCHHHHHHHHHHH
Confidence 37999999999999999999987753 342 3689987 379999999999
Q ss_pred HhcCCChHHHHHHHHcCCCCcccceeEEEEeecCCc--eeEEEEecCCCCCCCCcEEEEeecCCccccccccCCCCceEE
Q 003754 605 WASKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFV 682 (798)
Q Consensus 605 WASly~~RAv~yR~~~Gi~~~~~~MAVLVQemV~a~--~SGVlfT~nP~tg~~~~i~Iea~~GLGE~lVsG~~G~p~~f~ 682 (798)
|||+||+||+.||+++|++++++.|||+||+||+++ +|||+||+||.+++++.++|+++|||||+||+|.+ +||+|+
T Consensus 158 ~aS~~~~rA~~Yr~~~g~~~~~~~maVlVQ~mv~~~~~~SGV~fT~~P~~g~~~~~~I~a~~GlGe~vV~G~v-~pD~~~ 236 (782)
T TIGR01418 158 WASLFTDRAISYRVSQGFDHEKVAIAVGVQKMVRSDLGSSGVMFTIDTETGFKDAVFIESAWGLGEAVVGGAV-TPDEYV 236 (782)
T ss_pred HHccCCHHHHHHHHHcCCChhhhCeeEEEEEcccCCCCceeEEEecCCCCCCCCeEEEEEccCCCcccccCCc-CCeEEE
Confidence 999999999999999999999999999999999999 99999999999999999999999999999999986 999999
Q ss_pred EecCCCCC--CccccccccccccCCCceeEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHHH
Q 003754 683 TKKNNLKS--PIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVF 760 (798)
Q Consensus 683 v~k~~~~~--~~vl~~~sk~v~~~~~~~~i~~sds~gedle~~ag~Gl~~svp~~~~~~~~vdy~~~p~L~D~~~r~~~l 760 (798)
++|.+... ..++ ++.++.+ +..+++ +..| +.+.....+++++. +++|+|+|++ +
T Consensus 237 v~r~~~~~~~~~i~---~~~~~~k-~~~~~~--~~~g-------~~~~~~~~~~~~~~------~~~~~L~~~~-----l 292 (782)
T TIGR01418 237 VFKPTLEQGKKAIL---ERTLGSK-KIKMVY--DPDG-------GNVETKIVEVPEEE------RDAFSLSDEE-----I 292 (782)
T ss_pred Eeccccccccccee---eeecccc-ceEEEE--ccCC-------CCcceEEEeCCHHH------hhccCCCHHH-----H
Confidence 99875320 1122 4445543 112222 2111 11123345555432 4678999987 8
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEEEE--CCEEEEEeeccC
Q 003754 761 SKIAETGKIIESLYGYPQDIEGVLK--DGLIYVVQARPQ 797 (798)
Q Consensus 761 ~~La~la~~IE~~fG~PQDIEwai~--~g~LyIlQaRP~ 797 (798)
++|++++.+||++||+|||||||++ +|+|||||+||+
T Consensus 293 ~~La~l~~~lE~~fg~pqDIEWa~~~~~g~l~iLQaRPi 331 (782)
T TIGR01418 293 LELAKLAVLIEKHYGRPMDIEWAKDGFDGEIFIVQARPE 331 (782)
T ss_pred HHHHHHHHHHHHHhCCCceeEEEEECCCCeEEEEEeecc
Confidence 9999999999999999999999999 899999999996
No 4
>PF01326 PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; InterPro: IPR002192 This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP) []. Residues at the N terminus correspond to the transit peptide which is indispensable for the transport of the precursor protein into chloroplasts in plants []. This domain is present at the N terminus of some PEP-utilizing enzymes.; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2X0S_A 2OLS_A 1VBH_A ....
Probab=100.00 E-value=3.9e-50 Score=438.28 Aligned_cols=269 Identities=30% Similarity=0.516 Sum_probs=195.1
Q ss_pred CCcCHHhHHHHHHhhhCCCCccCCCceEeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCC----hHHHHHHHHHHHcCC
Q 003754 493 DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGD----LSKLQEIQEAVLQMS 568 (798)
Q Consensus 493 ~~vGgKAanL~~L~~~~p~g~~VP~GfvIpfgafe~fL~~~~~~~l~~~I~~l~~~l~~~d----~~~L~~Ir~~I~~~~ 568 (798)
..|||||+||++|++ .+++||+|||||+++|++||+++ ++.+.+..+.+.+...+ .+.+++||++|++.+
T Consensus 4 ~~vGgKa~~L~~L~~---~g~~VP~gfvIt~~~~~~~l~~~---~l~~~i~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 77 (327)
T PF01326_consen 4 SLVGGKAANLAELRR---AGVPVPPGFVITTDAFQEFLESN---GLREEIEQLLEPLDLSDREDLQAISKEIRELILSAP 77 (327)
T ss_dssp HHHHHHHHHHHHHHH---TT-S---EEEE-HHHHHHHHTTC---CHHHHHHHHHHBE-EEEEEECSSHHTTCCHEEEEET
T ss_pred HHCCHHHHHHHHHHH---CCCCCCcEEEecHHHHHHHHHcC---ChHHHHHHHHhhhccccHHHHHHHHHHHHHHHHhCC
Confidence 457999999999997 69999999999999999999987 78888888765443222 135689999999999
Q ss_pred CCHHHHHHHHHHHH------------hhC-------CCCCCCc-------cHHHHHHHHHHHHhcCCChHHHHHHHHcCC
Q 003754 569 APLSLIYELKNKMR------------SSG-------MPWPGDE-------GWNLAWRSIKKVWASKWNERAFISCRKANL 622 (798)
Q Consensus 569 lP~el~~eL~~a~r------------Ssg-------~s~aG~~-------~~e~l~~AIk~VWASly~~RAv~yR~~~Gi 622 (798)
+|+++.++|..++. ||+ .+|||+| +.++|++|||+||||+||+||+.||+++|+
T Consensus 78 lp~~~~~~l~~~~~~~~~~~~~~aVRSSa~~ED~~~~sfAG~~~s~l~v~~~~~l~~Aik~v~aS~f~~ra~~yr~~~g~ 157 (327)
T PF01326_consen 78 LPEELVEELEAALEELGQRDQPLAVRSSATSEDGAEASFAGQYDSVLNVPGEEELLEAIKQVWASLFSPRALAYRRRRGI 157 (327)
T ss_dssp --HHHHHHHHHHHTHHHHHHHHCCCEECE-HHHHH-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTSHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHhcccccccceEEEeccccccccchHHHHHHHHHHhCCChHHHHHHHHHHHHhCcCCHHHHHHHHhcCC
Confidence 99999999998863 332 2578876 369999999999999999999999999999
Q ss_pred CCcccceeEEEEeecCCceeEEEEecCCCCCCCCc-EEEEeecCCccccccccCCCCceEEEecCCCCCCcccccccccc
Q 003754 623 NHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSE-IYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLI 701 (798)
Q Consensus 623 ~~~~~~MAVLVQemV~a~~SGVlfT~nP~tg~~~~-i~Iea~~GLGE~lVsG~~G~p~~f~v~k~~~~~~~vl~~~sk~v 701 (798)
+++++.|||+||+||++++|||+||+||.+|+.+. ++||+++||||++|+|.+ +|++|++++.++. +. .+.+
T Consensus 158 ~~~~~~maVlVQ~mv~~~~sGV~fT~~p~~g~~~~~~~i~~~~Glge~vV~G~~-~~d~~~v~~~~~~---~~---~~~~ 230 (327)
T PF01326_consen 158 PDEDVGMAVLVQPMVDAEASGVAFTRNPITGEPNEDIVIEAVWGLGESVVSGEV-TPDSFIVSRSDPR---IR---EREI 230 (327)
T ss_dssp TTS---EEEEEEE---TTEEEEEESS-TTT--SSEEEEEEEESS-CHHHHHTSS---EECCC--EHHH---HH---EEE-
T ss_pred ChhHhCceeEEEEEecCcceeEEEeeCCCCCCCCcceEEEEccCCCcccccCCC-CCcEEEEEcCCcc---hh---hhhc
Confidence 99999999999999999999999999999999998 999999999999999998 9999999875431 21 2233
Q ss_pred ccCCCceeEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHhcCCCeeEE
Q 003754 702 GLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIE 781 (798)
Q Consensus 702 ~~~~~~~~i~~sds~gedle~~ag~Gl~~svp~~~~~~~~vdy~~~p~L~D~~~r~~~l~~La~la~~IE~~fG~PQDIE 781 (798)
+.+ . ..+... +++|+ ..++++. ++...++|++++ +++|++++.+||++||+|||||
T Consensus 231 ~~k--~-~~~~~~---------~~~~~-~~~~~~~------~~~~~~~l~~~~-----~~~L~~l~~~le~~~g~p~DIE 286 (327)
T PF01326_consen 231 GQK--S-VQLVPD---------EGGGL-EEVDVPE------ERQDSPSLSDEQ-----LQQLAELARKLEEHFGRPQDIE 286 (327)
T ss_dssp -----H-CCCCCC---------CTTTE-ECCCHHH------HCHCHHHHSHHH-----HHHHHHHHHHHHHHHTS-EEEE
T ss_pred CCc--e-EEEEEc---------CCCce-EEEeCch------hhhhhhhcCHHH-----HHHHHHHHHHHHHHcCCCeEEE
Confidence 322 1 111111 23343 2333322 134668888876 8999999999999999999999
Q ss_pred EEEECCEEEEEeeccCC
Q 003754 782 GVLKDGLIYVVQARPQM 798 (798)
Q Consensus 782 wai~~g~LyIlQaRP~v 798 (798)
||+++|+|||||+||+.
T Consensus 287 w~~~~~~l~iLQaRPi~ 303 (327)
T PF01326_consen 287 WAIDGGQLYILQARPIT 303 (327)
T ss_dssp EEEETTEEEEEEEEE--
T ss_pred EEEECCEEEEEEecccc
Confidence 99999999999999984
No 5
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=100.00 E-value=2.4e-40 Score=378.56 Aligned_cols=246 Identities=18% Similarity=0.270 Sum_probs=194.0
Q ss_pred cCCceeEeCCCCC---CCCcCHHhHHHHHHhhhCCCCccCCCceEeCHHHHHHHHHhcc--chhHHHHHHHHHhhhC---
Q 003754 479 FRGKYAVSVEDFT---PDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANKISRLYKFIN--- 550 (798)
Q Consensus 479 ~~~~~vl~l~e~~---~~~vGgKAanL~~L~~~~p~g~~VP~GfvIpfgafe~fL~~~~--~~~l~~~I~~l~~~l~--- 550 (798)
+..+++++|++.. .+.+|||++||++|++ .++|||+|||||+.+|++|++.+. .+.++++|....+.++
T Consensus 4 ~~~~~v~~l~~~~~~~~~~lGgK~a~L~em~~---~glpVP~GFvITt~a~~~f~~~~~~~~~~l~~ei~~~l~~le~~~ 80 (530)
T PRK05878 4 TLENAVVLLDGGANQPRELLGGKGHGIDMMRR---LGLPVPPAFCITTEVCVRYLADPGSTIDAIWDDVLDRMRWLEAET 80 (530)
T ss_pred ccCceEEECCCCChhhhhccCHHHHhHHHHHH---CCCCCCCcEEEeHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHh
Confidence 4567899999876 4689999999999998 699999999999999999999863 2346655554332221
Q ss_pred ---CC---ChH----------HHHHHHHHHHcCCCCHHHHHHHHHHHHh------hCCCCCCCc-------------cHH
Q 003754 551 ---GG---DLS----------KLQEIQEAVLQMSAPLSLIYELKNKMRS------SGMPWPGDE-------------GWN 595 (798)
Q Consensus 551 ---~~---d~~----------~L~~Ir~~I~~~~lP~el~~eL~~a~rS------sg~s~aG~~-------------~~e 595 (798)
.+ ++. ...-+++.|+++.+|++++++|.+.... +..+|+|+| .++
T Consensus 81 g~~fg~~~~plllsvrS~a~~S~pGm~dtiLn~gl~d~~~~~l~~~~g~~~~a~D~~~rF~~~y~~vv~~~~~~p~dp~~ 160 (530)
T PRK05878 81 GRTFGRGPRPLLVSVRSGAAQSMPGMMDTILNLGINDAVEQALAAEGGDPDFAADTRRRFTEMYRRIVGSGSPPPDDPYE 160 (530)
T ss_pred hhccCCCCCCceEEEccCCCCCCccHhhhhhhcCCCHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHhccCCCCCCChHH
Confidence 11 111 1234999999999999999999764110 112344443 158
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHcCCCCcccceeEEEEeecCCc-----eeEEEEecCCCCCCCCcEEEEeecCCcccc
Q 003754 596 LAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGD-----YAFVIHTKNPLSGDNSEIYTEIVKGLGETL 670 (798)
Q Consensus 596 ~l~~AIk~VWASly~~RAv~yR~~~Gi~~~~~~MAVLVQemV~a~-----~SGVlfT~nP~tg~~~~i~Iea~~GLGE~l 670 (798)
++..|||.||||+||+||+.||+++|++++. .|||+||+||.++ .|||+||+||.+|+...+.+.+++|+||.|
T Consensus 161 qL~~Aik~V~aS~~s~rA~~YR~~~gi~~~~-~mAV~VQ~MV~g~~~~~s~sGV~FT~dP~tg~~~~~~~~~~~GlGe~v 239 (530)
T PRK05878 161 QLRAAIEAVFASWNSPRAVAYRRHHGLDDDG-GTAVVVQAMVFGNLDANSGTGVLFSRNPITGANEPFGEWLPGGQGEDV 239 (530)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCCccc-CcEEEEEeCccCCCCCCcceEEEEeCCCCCCCCcEEEEEcCCCCCHHH
Confidence 9999999999999999999999999998754 8999999999664 589999999999998888888899999999
Q ss_pred ccccCCCCceEEEecCCCCCCccccccccccccCCCceeEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCc
Q 003754 671 VGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMV 750 (798)
Q Consensus 671 VsG~~G~p~~f~v~k~~~~~~~vl~~~sk~v~~~~~~~~i~~sds~gedle~~ag~Gl~~svp~~~~~~~~vdy~~~p~L 750 (798)
|+|.+ +|+.|.+.+. ..|
T Consensus 240 VsG~~-~p~~~~~~~~-----------------------------------------------------------~~p-- 257 (530)
T PRK05878 240 VSGLV-DVAPITALRD-----------------------------------------------------------EQP-- 257 (530)
T ss_pred hcCCc-CCcchhhhcc-----------------------------------------------------------cCH--
Confidence 99976 5654321110 001
Q ss_pred CCcccchHHHHHHHHHHHHHHHhcCCCeeEEEEEECCEEEEEeeccC
Q 003754 751 GDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQ 797 (798)
Q Consensus 751 ~D~~~r~~~l~~La~la~~IE~~fG~PQDIEwai~~g~LyIlQaRP~ 797 (798)
+ .+++|++++.+||++||.||||||++++|+|||||+||.
T Consensus 258 --~-----~~~eL~~~a~~LE~~fg~pqDIEfai~~g~L~iLQaRp~ 297 (530)
T PRK05878 258 --A-----VYDELMAAARTLERLGRDVQDIEFTVESGKLWLLQTRSA 297 (530)
T ss_pred --H-----HHHHHHHHHHHHHHHcCCceeEEEEEECCEEEEEEeecc
Confidence 1 267899999999999999999999999999999999995
No 6
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.9e-38 Score=374.77 Aligned_cols=278 Identities=26% Similarity=0.429 Sum_probs=221.5
Q ss_pred eeEeCCCCC---CCCcCHHhHHHHHHhhhCCCCccCCCceEeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChHHH--
Q 003754 483 YAVSVEDFT---PDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKL-- 557 (798)
Q Consensus 483 ~vl~l~e~~---~~~vGgKAanL~~L~~~~p~g~~VP~GfvIpfgafe~fL~~~~~~~l~~~I~~l~~~l~~~d~~~L-- 557 (798)
++.++.+.+ ..++|||++||++|.+ .|++||+||||++.+|+.|++.+ ++.+.+......++..+...+
T Consensus 4 ~~~~~~e~~~~~~~lvGgKga~L~Em~~---~Gl~VP~GF~itt~a~~~f~~~~---~~~~~~~~~l~~~~~~~~~~l~~ 77 (740)
T COG0574 4 LILWLDEVKLEDVGLVGGKGASLGEMLK---MGLPVPPGFAITSEAYRYFLKEN---GLADKILKILSALDLNDNVELEF 77 (740)
T ss_pred cccchhhcCcchhhhcCCccCCHHHHHh---CCCCCCCeEEEeHHHHHHHHhcc---chHHHHHHHhcCCCcchhHHHHH
Confidence 445555543 6799999999999998 69999999999999999999988 677777665555444443333
Q ss_pred --HHHHHHHHcCCCCHHHHHHHHHHHHh---------------hC-------CCCCCCc-------cHHHHHHHHHHHHh
Q 003754 558 --QEIQEAVLQMSAPLSLIYELKNKMRS---------------SG-------MPWPGDE-------GWNLAWRSIKKVWA 606 (798)
Q Consensus 558 --~~Ir~~I~~~~lP~el~~eL~~a~rS---------------sg-------~s~aG~~-------~~e~l~~AIk~VWA 606 (798)
..++..|+..++|+++.+++.+++.. |+ .+|+|++ +.++++.+|++|||
T Consensus 78 ~~~~~~~~i~~~~~p~~l~~ei~~al~~~~~~~~~~~~~avrss~taedL~~~sFagq~~t~lni~~~e~l~~~i~~~~a 157 (740)
T COG0574 78 RSELIRPLIMPTPLPEDLSAEIAEALEELTGYGDSDADVAVRSSATAEDLPGASFAGQQETYLNVDGIEDLLEAIKKCWA 157 (740)
T ss_pred HHHHHHhhhccCCCChHHHHHHHHHHHHhccccccceeEEEeeccccccCCcccccccccccCCcCCHHHHHHHHHHHHH
Confidence 68999999999999999999998744 22 2578865 48999999999999
Q ss_pred cCCChHHHHHHHHcCCCCcccceeEEEEeecCCc--eeEEEEecCCCCCCCCcEEEEeecCCccccccccCCCCceEEEe
Q 003754 607 SKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTK 684 (798)
Q Consensus 607 Sly~~RAv~yR~~~Gi~~~~~~MAVLVQemV~a~--~SGVlfT~nP~tg~~~~i~Iea~~GLGE~lVsG~~G~p~~f~v~ 684 (798)
|+||+||+.||.++|+++..+.|||+||+||.++ .|||+||+||.||....+.+++.|||||.+|+|.+ +|+.|++.
T Consensus 158 Sl~~~RAi~Yr~~~~~~~~~~~laV~VQ~MV~~~~~~sGV~FT~~P~tg~~~~~~i~~~~glGE~vV~G~v-tpd~~~~~ 236 (740)
T COG0574 158 SLFVDRAIAYRYHNGIDHSELGLAVVVQKMVFSDLGESGVMFTIDPITGERDVVVIESSWGLGEDVVDGQV-TPDEYYVS 236 (740)
T ss_pred hhcchhHHHHHHHcCCcchhhceEEEEeeeeccCCCceeEEEecCCccCCcceEEEEccccCccceEEEEE-cCceEEEe
Confidence 9999999999999999999999999999999999 99999999999999999999999999999999998 99999999
Q ss_pred cCCCCCCccccccccccccCCCceeEeecCCCCcccccccCCCce-eeeecCCccccccccCCCCCcCCcccchHHHHHH
Q 003754 685 KNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLY-DSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKI 763 (798)
Q Consensus 685 k~~~~~~~vl~~~sk~v~~~~~~~~i~~sds~gedle~~ag~Gl~-~svp~~~~~~~~vdy~~~p~L~D~~~r~~~l~~L 763 (798)
|++. ... .++++.. .+++..+. +.+.+ +..++++. ......++|.. +.++
T Consensus 237 k~~~-~~~--~~~~~~~------~~i~~~~~---------~e~~~~~~~ev~~~------~~~~~~l~~~~-----i~~l 287 (740)
T COG0574 237 KDTL-VEK--ALPSKLI------KLIYDADK---------LEGHRARIEEIEDE------FTDAFSLSDEE-----IKRL 287 (740)
T ss_pred ccch-hhh--hhhHHHH------HHHHHhhc---------ccceeeeeccCChH------HhhhhhccHHH-----HHHH
Confidence 9653 000 1122211 12221111 11111 11222211 23456788776 8999
Q ss_pred HHHHHHHHHhcCCCeeEEEEEECCEEEEEeeccC
Q 003754 764 AETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQ 797 (798)
Q Consensus 764 a~la~~IE~~fG~PQDIEwai~~g~LyIlQaRP~ 797 (798)
++++.+||.+|+.||||||++++ ++||+|+||.
T Consensus 288 a~~~~~ie~~~~~p~diEw~id~-~~~ilq~rP~ 320 (740)
T COG0574 288 AKLAIKIEKHYGRPMDIEWAIDG-KLYILQARPE 320 (740)
T ss_pred HHHHHHHHHhhCCchhhhhhhcC-ceEEEEecCc
Confidence 99999999999999999999999 8999999996
No 7
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=100.00 E-value=6.3e-36 Score=358.67 Aligned_cols=242 Identities=19% Similarity=0.276 Sum_probs=186.5
Q ss_pred ceeEeCCCCC---CCCcCHHhHHHHHHhhhCCCCccCCCceEeCHHHHHHHHHhcc--chhHHHHHHHHHhhh----C--
Q 003754 482 KYAVSVEDFT---PDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANKISRLYKFI----N-- 550 (798)
Q Consensus 482 ~~vl~l~e~~---~~~vGgKAanL~~L~~~~p~g~~VP~GfvIpfgafe~fL~~~~--~~~l~~~I~~l~~~l----~-- 550 (798)
++++++++.+ .+.+|||++||++|.+ .|+|||+|||||+.+|+.|++.+. ..++++.|....+.+ +
T Consensus 2 ~~v~~~~~~~~~~~~~~GgK~a~L~em~~---~glpVPpGFviTt~a~~~~~~~~~~~~~~l~~~i~~~~~~le~~~g~~ 78 (856)
T TIGR01828 2 KRVYAFGEGNASMKNLLGGKGANLAEMTK---LGLPVPPGFTITTEACNEYYANGKQFPKGLQEEIKEALTLLEEKTGKK 78 (856)
T ss_pred CeEEECCCCCchhhhhcCHHHHhHHHHHh---CCCCCCCcEEEeHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHhCcc
Confidence 4788888875 3579999999999998 599999999999999999999873 234665554433322 2
Q ss_pred ---CCChH----------HHHHHHHHHHcCCCCHHHHHHHHH-------HH---H----hhC------------------
Q 003754 551 ---GGDLS----------KLQEIQEAVLQMSAPLSLIYELKN-------KM---R----SSG------------------ 585 (798)
Q Consensus 551 ---~~d~~----------~L~~Ir~~I~~~~lP~el~~eL~~-------a~---r----Ssg------------------ 585 (798)
.+++. ....+++.|+++.+|++++++|.+ ++ | +.|
T Consensus 79 fg~~~~PllvsvrS~a~~smpgm~~tiLn~glnd~~~~~l~~~~g~~~fa~d~yrRfi~~~g~vvl~v~~~~f~~~~~~~ 158 (856)
T TIGR01828 79 FGDTENPLLVSVRSGAAVSMPGMMDTILNLGLNDETVEGLAKLTGNARFAYDSYRRFIQMFGDVVLGIPHELFEQILEAM 158 (856)
T ss_pred cCCCCCcceEEeccCCCCCCccHHHHHHhCCCCHHHHHHHHHhhCChHHHHHHHHHHHhhhcccccCCCchhHHHHHHHH
Confidence 11211 124899999999999999999986 32 2 111
Q ss_pred -----C------C----------CCCCc-----------cHHHHHHHHHHHHhcCCChHHHHHHHHcCCCCcccceeEEE
Q 003754 586 -----M------P----------WPGDE-----------GWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLI 633 (798)
Q Consensus 586 -----~------s----------~aG~~-----------~~e~l~~AIk~VWASly~~RAv~yR~~~Gi~~~~~~MAVLV 633 (798)
. + |+|+| .++++..||+.||||+||+||+.||+.+|++++ ..|||+|
T Consensus 159 ~~~~~~~~d~~~s~~~~~~l~~~f~~~~~~~~g~~f~~~p~~qL~~Ai~~V~aS~~s~rA~~YR~~~gi~~~-~~~aV~V 237 (856)
T TIGR01828 159 KEEKGVKLDTDLTADDLKELIEKYKAIYREATGKPFPQDPKEQLELAIKAVFDSWNNPRAIVYRRLNDIPED-WGTAVNI 237 (856)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHcCChHHHHHHHhcCCCcc-cCcEEEE
Confidence 0 1 22322 378999999999999999999999999999996 8999999
Q ss_pred EeecCCc-----eeEEEEecCCCCCCCCcEEEEee-cCCccccccccCCCCceEEEecCCCCCCccccccccccccCCCc
Q 003754 634 QETICGD-----YAFVIHTKNPLSGDNSEIYTEIV-KGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKP 707 (798)
Q Consensus 634 QemV~a~-----~SGVlfT~nP~tg~~~~i~Iea~-~GLGE~lVsG~~G~p~~f~v~k~~~~~~~vl~~~sk~v~~~~~~ 707 (798)
|+||.++ .|||+||+||.||... ++++.. .|+||.+|+|.+ +|+.|...+
T Consensus 238 Q~MV~g~~~~~s~SGV~FTrdP~tg~~~-~~g~~~i~a~ge~vVsG~~-tp~~~~~~~---------------------- 293 (856)
T TIGR01828 238 QSMVFGNMGETSGTGVAFTRNPSTGEKG-LFGEFLINAQGEDVVAGIR-TPQPITAME---------------------- 293 (856)
T ss_pred EEeecCCCCCCceeEEEEeCCCCCCCCc-ceEEEEEcCCCchhccccc-CcHHHHHhh----------------------
Confidence 9999654 7999999999999763 444433 469999999875 554321100
Q ss_pred eeEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHhcCCCeeEEEEEECC
Q 003754 708 SIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDG 787 (798)
Q Consensus 708 ~~i~~sds~gedle~~ag~Gl~~svp~~~~~~~~vdy~~~p~L~D~~~r~~~l~~La~la~~IE~~fG~PQDIEwai~~g 787 (798)
-+.++ .+++|++++..||++||.||||||++++|
T Consensus 294 -----------------------------------------~~~p~-----~~~~L~~~a~~lE~~fg~pqDIEfai~~g 327 (856)
T TIGR01828 294 -----------------------------------------ADMPD-----VYKELLDIAEKLEGHYRDMQDIEFTIERG 327 (856)
T ss_pred -----------------------------------------hcChH-----HHHHHHHHHHHHHHHcCCcccceEEEECC
Confidence 00111 27899999999999999999999999999
Q ss_pred EEEEEeeccC
Q 003754 788 LIYVVQARPQ 797 (798)
Q Consensus 788 ~LyIlQaRP~ 797 (798)
+|||||+||.
T Consensus 328 ~L~iLQ~RP~ 337 (856)
T TIGR01828 328 KLYMLQTRNG 337 (856)
T ss_pred EEEEEEeecC
Confidence 9999999994
No 8
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=100.00 E-value=1.2e-32 Score=329.65 Aligned_cols=242 Identities=24% Similarity=0.370 Sum_probs=181.2
Q ss_pred CceeEeCCC----CC---CCCcCHHhHHHHHHhhhCCCCccCCCceEeCHHHHHHHHHhcc--chhHHH----HHHHHHh
Q 003754 481 GKYAVSVED----FT---PDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIAN----KISRLYK 547 (798)
Q Consensus 481 ~~~vl~l~e----~~---~~~vGgKAanL~~L~~~~p~g~~VP~GfvIpfgafe~fL~~~~--~~~l~~----~I~~l~~ 547 (798)
.++++++++ .+ .+++|||++||++|.+ .|+|||+||+||+++|++|++... .+++++ .|..|+.
T Consensus 3 ~~~v~~f~~~~~~~~~~~~~llGgKga~L~em~~---~glpVPpgF~itt~ac~~~~~~~~~~~~~l~~~i~~~l~~lE~ 79 (879)
T PRK09279 3 KKYVYLFGGGKAEGNASMKDLLGGKGANLAEMTN---LGLPVPPGFTITTEACNEYYANGKKLPEGLKEEVKEALAKLEE 79 (879)
T ss_pred cceEEEeCCCCcccChhHHhhcCHHHHhHHHHHH---CCCCCCCcEEEcHHHHHHHHhcCccCcHHHHHHHHHHHHHHHH
Confidence 367788743 22 4789999999999998 699999999999999999998762 234444 3444544
Q ss_pred hhC--CCChH-------------HHHHHHHHHHcCCCCHHHHHHHHHH----------HHh----h--------------
Q 003754 548 FIN--GGDLS-------------KLQEIQEAVLQMSAPLSLIYELKNK----------MRS----S-------------- 584 (798)
Q Consensus 548 ~l~--~~d~~-------------~L~~Ir~~I~~~~lP~el~~eL~~a----------~rS----s-------------- 584 (798)
..+ .++.+ ...-+.+.|+++.+.++.+..|.+. ||. .
T Consensus 80 ~~g~~fg~~~~PLLvSVRSga~~SmPGmmdTiLNlGlnd~~~~~la~~tg~~~fa~d~yrRfiq~~~~vv~gi~~~~fe~ 159 (879)
T PRK09279 80 LTGKKFGDPENPLLVSVRSGARVSMPGMMDTVLNLGLNDETVEGLAKKTGNERFAYDSYRRFIQMFGDVVLGIDHELFEE 159 (879)
T ss_pred HhCcccCCCCCceeEEEecCCCCCCCCcchhhhcCCCCHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 333 12211 1245677777888877777777642 111 0
Q ss_pred -------------------------------------CCCCCCCccHHHHHHHHHHHHhcCCChHHHHHHHHcCCCCccc
Q 003754 585 -------------------------------------GMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNL 627 (798)
Q Consensus 585 -------------------------------------g~s~aG~~~~e~l~~AIk~VWASly~~RAv~yR~~~Gi~~~~~ 627 (798)
|.+||- ..++++..||+.||+|+||+||+.||+.+|++++ .
T Consensus 160 ~~~~~k~~~~~~~~~~l~~~~l~~l~~~~k~~~~~~~g~~fp~-dp~~QL~~AI~aV~~S~~s~rA~~YR~~~gi~~~-~ 237 (879)
T PRK09279 160 ILEELKEKKGVKLDTDLTAEDLKELVERYKEIVKEETGKPFPQ-DPYEQLWGAIGAVFRSWNNPRAITYRRLNNIPED-W 237 (879)
T ss_pred HHHHHHHHcCCCCccCCCHHHHHHHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHHhhcChHHHHHHHhcCCCcc-c
Confidence 111221 1278999999999999999999999999999986 8
Q ss_pred ceeEEEEeecCCc-----eeEEEEecCCCCCCCCcEEEEe-ecCCccccccccCCCCceEEEecCCCCCCcccccccccc
Q 003754 628 CMAVLIQETICGD-----YAFVIHTKNPLSGDNSEIYTEI-VKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLI 701 (798)
Q Consensus 628 ~MAVLVQemV~a~-----~SGVlfT~nP~tg~~~~i~Iea-~~GLGE~lVsG~~G~p~~f~v~k~~~~~~~vl~~~sk~v 701 (798)
.|||+||+||.++ .|||+||+||.||+... +++. +.|+||.||+|.+ +|+.|. .
T Consensus 238 g~AV~VQ~MV~gn~~~~s~SGV~FTrdP~TG~~~~-~Ge~l~~aqGedVVsG~~-tp~~~~---------------~--- 297 (879)
T PRK09279 238 GTAVNVQAMVFGNMGEDSGTGVAFTRNPSTGEKKL-YGEFLINAQGEDVVAGIR-TPQPIP---------------S--- 297 (879)
T ss_pred CceEEEEeccccCCCCCcceEEEEeCCCCCCCCce-eEEEecCCCChhhhcCcc-CcchhH---------------H---
Confidence 9999999999765 69999999999998654 4444 5799999999976 554330 0
Q ss_pred ccCCCceeEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHhcCCCeeEE
Q 003754 702 GLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIE 781 (798)
Q Consensus 702 ~~~~~~~~i~~sds~gedle~~ag~Gl~~svp~~~~~~~~vdy~~~p~L~D~~~r~~~l~~La~la~~IE~~fG~PQDIE 781 (798)
+ + .. .++ .+++|++++..||++||.|||||
T Consensus 298 -l----------------------------------~---------~~-~p~-----~~~~L~~~~~~LE~~f~~pqDIE 327 (879)
T PRK09279 298 -L----------------------------------E---------EA-MPE-----VYAELVDIAKKLEKHYRDMQDIE 327 (879)
T ss_pred -H----------------------------------h---------hc-ChH-----HHHHHHHHHHHHHHHhCCCeeeE
Confidence 0 0 00 011 27899999999999999999999
Q ss_pred EEEECCEEEEEeeccC
Q 003754 782 GVLKDGLIYVVQARPQ 797 (798)
Q Consensus 782 wai~~g~LyIlQaRP~ 797 (798)
|++++|+|||||+||.
T Consensus 328 ftie~g~L~iLQtRp~ 343 (879)
T PRK09279 328 FTIERGKLYMLQTRNG 343 (879)
T ss_pred EEEECCEEEEEEeCCc
Confidence 9999999999999994
No 9
>PRK05849 hypothetical protein; Provisional
Probab=99.95 E-value=3.7e-27 Score=279.78 Aligned_cols=193 Identities=20% Similarity=0.179 Sum_probs=142.1
Q ss_pred CCCcCHHhHHHHHHhhhCCCCccCCCceEeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChHHHHHHHHHHHcCCCCH
Q 003754 492 PDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPL 571 (798)
Q Consensus 492 ~~~vGgKAanL~~L~~~~p~g~~VP~GfvIpfgafe~fL~~~~~~~l~~~I~~l~~~l~~~d~~~L~~Ir~~I~~~~lP~ 571 (798)
.-.+|+||++|+.|++++ .+++||+++++|...+.+ . ....+ +.|+..+ +.
T Consensus 5 ~~~~~~KA~tL~~L~~~~-~~~~i~~~~v~~~~e~~~---~-----~~~~~---------------~~i~~~~-----~~ 55 (783)
T PRK05849 5 ELFFQTKAETLANLQPIL-KKAKILPLLLFSVREWLS---N-----KDKVL---------------EEIQNSF-----PA 55 (783)
T ss_pred ccccchHHHHHHHHHhhh-cCCCCCCeEEeCHHhhcc---C-----HHHHH---------------HHHHHhc-----CC
Confidence 357899999999999866 589999999999874432 1 11111 1222211 00
Q ss_pred HHHHHHHHHHHhhC-------CCCCCCc---------cHHHHHHHHHHHHhcCCChHHHHHHHHcCCCCcccceeEEEEe
Q 003754 572 SLIYELKNKMRSSG-------MPWPGDE---------GWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQE 635 (798)
Q Consensus 572 el~~eL~~a~rSsg-------~s~aG~~---------~~e~l~~AIk~VWASly~~RAv~yR~~~Gi~~~~~~MAVLVQe 635 (798)
-.-++|||+ .||||+| ..+++..||++||||+++ ++ .|||+||+
T Consensus 56 -----~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~~~~~~L~~AI~~V~aS~~~-----------~~----~~aVlVQ~ 115 (783)
T PRK05849 56 -----DKLIVRSSSRSEDSSSSSNAGAFLSILNVNADSKDQLLKAIEKVIASYGT-----------SK----DDEILVQP 115 (783)
T ss_pred -----CeEEEECCCcccCCCcCccccCceeEecCCCCcHHHHHHHHHHHHHhhCC-----------CC----CCeEEEEe
Confidence 023567764 4799997 145999999999999776 22 38999999
Q ss_pred ecC-CceeEEEEecCCCCCCCCcEEEEeecCCccccccccCCCCceEEEecCCCCCCccccccccccccCCCceeEeecC
Q 003754 636 TIC-GDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSD 714 (798)
Q Consensus 636 mV~-a~~SGVlfT~nP~tg~~~~i~Iea~~GLGE~lVsG~~G~p~~f~v~k~~~~~~~vl~~~sk~v~~~~~~~~i~~sd 714 (798)
||. +..|||+||+||.+|++..+....++|+||.||+|.. +|..+.+.+.+
T Consensus 116 MV~~~~~SGV~FTrdP~tg~~~~~iey~~~G~ge~VVsG~~-t~~~~~~~~~~--------------------------- 167 (783)
T PRK05849 116 MLEDIVLSGVAMSRDPESGAPYYVINYDESGSTDSVTSGSG-GSATTVYHYRD--------------------------- 167 (783)
T ss_pred CccCCCceEEEEECCCCCCCCceEEEEcCCCCCcceecccC-CCCceeeeccc---------------------------
Confidence 997 6999999999999998666555555899999999976 55544332110
Q ss_pred CCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHhcCC-CeeEEEEE-ECCEEEEE
Q 003754 715 SNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGY-PQDIEGVL-KDGLIYVV 792 (798)
Q Consensus 715 s~gedle~~ag~Gl~~svp~~~~~~~~vdy~~~p~L~D~~~r~~~l~~La~la~~IE~~fG~-PQDIEwai-~~g~LyIl 792 (798)
.++++++. +++|+++++.||++||+ |||||||+ .+|+||||
T Consensus 168 --------------------------------~~~l~p~~-----~~~L~~la~~LE~~fg~dpqDIEfaid~~g~L~lL 210 (783)
T PRK05849 168 --------------------------------ALVFKPPR-----LKKLIELIRELEALFGCDFLDIEFAIDEKEELYIL 210 (783)
T ss_pred --------------------------------cccCCHHH-----HHHHHHHHHHHHHHcCCCCeeeEEEEccCCEEEEE
Confidence 01223333 78999999999999986 99999999 58999999
Q ss_pred eeccCC
Q 003754 793 QARPQM 798 (798)
Q Consensus 793 QaRP~v 798 (798)
|+||+.
T Consensus 211 Q~RPi~ 216 (783)
T PRK05849 211 QVRPIT 216 (783)
T ss_pred EccCCC
Confidence 999963
No 10
>PRK05849 hypothetical protein; Provisional
Probab=96.82 E-value=0.018 Score=70.59 Aligned_cols=175 Identities=12% Similarity=0.110 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHH---hHHHHHHhh---CchHHHHhhhcCccccccccccHHHHhhhhhHH----HHHHHhhhHHH
Q 003754 267 ALQAKAILDRLQLVLAE---RSQTYQKKF---QPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAV----LSILINRFEPV 336 (798)
Q Consensus 267 al~~kA~ldr~r~~~~~---~~~~~~~~~---~~~a~~lg~~lg~e~~~~~~F~ee~IR~~~~f~----ls~l~~~l~~~ 336 (798)
...++..++++|..++. .--.+.+.+ -.....+|..+|+++.-+--++-++|++...-. ....+..+-..
T Consensus 571 ~~~~~~ll~~~r~~i~~RE~~Kf~~tr~l~~~r~~l~~lG~~Lg~~~dDvf~L~~~El~~~~~~~~~~~~~~~l~~~i~~ 650 (783)
T PRK05849 571 NIDAEEFLDFLKEAIEGRELVKFEFTRNLSDALELIALLGAYYGISREDLSHLDIKDLLNLYSSLLSINPKELFLEEIKR 650 (783)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeecHHHHHHHHhccccccchhhHHHHHHH
Confidence 35567888888877733 111222222 333446788889877766666777676532110 11222111111
Q ss_pred HHHH----h--cCC-----------------CceeeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccc-c-CC
Q 003754 337 LRKV----A--NLG-----------------CWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEE-I-PV 391 (798)
Q Consensus 337 lr~~----a--~~~-----------------~wq~ispg~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~Ee-i-p~ 391 (798)
.++. . ... .=..++||.+.|.++++..-.. ......|||+..+|=.=. + ..
T Consensus 651 rk~~~~~~~~~~~P~li~~~~~~~~~~~~~~~~n~is~g~v~g~v~v~~~~~~----~~~~G~Ilv~~~tdPg~~~lf~~ 726 (783)
T PRK05849 651 NKQEYELTRSLKLPPLICSADDVYSFEIHESKPNFITQKRVEATVADLDNDND----DDLEGKIVCIENADPGYDWLFTK 726 (783)
T ss_pred HHHHHHHHhcCCCCCeeccCCccccccccCCCCCCccCCEEEEEEEEecChhh----cCCCCCEEEeCCCCccchHHHhh
Confidence 1111 0 000 0023799999999999875421 112456999986553111 1 12
Q ss_pred CcEEEecCCCCCCchhhhhhhccCCceeeEecchHHHHHHHhcCCCeEEEEEcCCce
Q 003754 392 GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNL 448 (798)
Q Consensus 392 ~V~GVit~~~~~~LSHv~vrARn~gVp~a~~~d~~~~~~l~~~~Gk~V~l~vs~~~~ 448 (798)
+++||||..-+ ..||.+++||..|||-+.--.....+.+ .+|+.|.+....+.+
T Consensus 727 ~i~g~Vte~Gg-~~SH~AI~ARe~gIPavvg~~~~~~~~~--~~g~~v~vDg~~G~v 780 (783)
T PRK05849 727 GIAGLITCYGG-ANSHMAIRAAELGLPAVIGVGEELFEKW--LKAKRILLDCASQRI 780 (783)
T ss_pred heeEEEEcCCC-cccHHHHHHHHcCCCEEEccCcchhhhc--cCCCEEEEECCCCEE
Confidence 69999998876 8999999999999999653221112222 369988887766444
No 11
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=96.68 E-value=0.054 Score=67.59 Aligned_cols=174 Identities=15% Similarity=0.107 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHH---HHhHHHHHHhhC---chHHHHhhhc---Cc--cccccccccHHHHhhhhh---HHHHHHHh
Q 003754 266 WALQAKAILDRLQLVL---AERSQTYQKKFQ---PSVKYLGCLL---GV--EKYVIDNFTEELVRAQSE---AVLSILIN 331 (798)
Q Consensus 266 wal~~kA~ldr~r~~~---~~~~~~~~~~~~---~~a~~lg~~l---g~--e~~~~~~F~ee~IR~~~~---f~ls~l~~ 331 (798)
....++..+.++|..+ |.+--.+...+. -....+|..| |+ ++.-+=-++-++|++-.. ....+...
T Consensus 651 ~~~~~~~~l~~ar~~~~~RE~~k~~~~~~~~~~R~~~~~~g~~l~~~G~L~~~~Dif~L~~~El~~~~~g~~~~~~~i~~ 730 (871)
T PRK06241 651 KAKETKRMISRLRNFIGYREYPKYGRIRRYGIYKQALLKEAEQLVQAGVLAEPEDIFYLTFEELREVVRTNKLDYELIAK 730 (871)
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHCCCCCChhheeeecHHHHHHHHcCCcccHHHHHH
Confidence 4567788888888877 322222333333 5556677766 77 545454456666664211 00011111
Q ss_pred hhHHHHHHHh------------c----------CC---Cc--eeeeeeeEEEEEEEecccccccccccCCCeEEEEeCCC
Q 003754 332 RFEPVLRKVA------------N----------LG---CW--QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRIT 384 (798)
Q Consensus 332 ~l~~~lr~~a------------~----------~~---~w--q~ispg~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~ 384 (798)
+ +..+... + .. .+ ..+++|.+.|.++++....+. ....+.|||+...+
T Consensus 731 r--k~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~G~v~G~v~v~~~~~~~---~~~~g~ILV~~~~~ 805 (871)
T PRK06241 731 R--KEEYELYEKLTPPRVMTSDGEIITGKYKRENLPAGALIGLPVSSGVVEGRARVILNPEDA---DLEKGDILVTAFTD 805 (871)
T ss_pred H--HHHHHHhhcCCCCceecCCCccccccccccCCCCCceeEeecCCCeEEEEEEEECCHHHc---CCCCCeEEEecCCC
Confidence 1 1110100 0 00 11 126889999999998876553 23456899999877
Q ss_pred CccccCC--CcEEEecCCCCCCchhhhhhhccCCceeeEecchHHHHHHHh-cCCCeEEEEEcCCceEE
Q 003754 385 GEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRL-KEGKAVSIRLKSTNLII 450 (798)
Q Consensus 385 G~Eeip~--~V~GVit~~~~~~LSHv~vrARn~gVp~a~~~d~~~~~~l~~-~~Gk~V~l~vs~~~~~~ 450 (798)
+. ..|. .+.||||..-+ .+||.+|.||..|||-++.-.. . .+. .+|..|.+....+.+.+
T Consensus 806 p~-~~~~~~~~~giv~~~Gg-~~sH~aIvare~gIPavv~~~~-~---~~~l~~G~~v~lDg~~G~v~i 868 (871)
T PRK06241 806 PG-WTPLFVSIKGLVTEVGG-LMTHGAVIAREYGIPAVVGVEN-A---TKLIKDGQRIRVDGTEGYVEI 868 (871)
T ss_pred HH-HHHHHHhceEEEEcCCC-cchHHHHHHHhcCCCEEEcccc-H---HhhcCCCCEEEEECCCCEEEE
Confidence 73 3553 79999887665 9999999999999998764331 1 333 37999999877655543
No 12
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=96.42 E-value=0.0036 Score=55.28 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=48.1
Q ss_pred CCCeEEEEeCCCCcccc-C-CCcEEEecCCCCCCchhhhhhhccCCceeeEecchHHHHHHHhcCCCeEEEEEc
Q 003754 373 RRPTIIIASRITGEEEI-P-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLK 444 (798)
Q Consensus 373 ~~p~Ill~~~~~G~Eei-p-~~V~GVit~~~~~~LSHv~vrARn~gVp~a~~~d~~~~~~l~~~~Gk~V~l~vs 444 (798)
.+|+||+++..+-.+-. . .+++||||.+-. ++||.++.||.+|||.+.--.. .... -.+|.+|.+..+
T Consensus 9 ~~~~IlV~~~~~p~~~~~~~~~~~Giv~~~Gg-~~SH~aIlAr~~giP~ivg~~~-~~~~--i~~g~~v~lDg~ 78 (80)
T PF00391_consen 9 PEGVILVAEELTPSDLALDLQRVAGIVTEEGG-PTSHAAILARELGIPAIVGVGD-ATEA--IKDGDWVTLDGN 78 (80)
T ss_dssp TSTEEEEESS--TTCHHSHHTTSSEEEESSSS-TTSHHHHHHHHTT-EEEESTTT-HHHH--SCTTEEEEEETT
T ss_pred CCCEEEEECCCCHHHHhcchhheEEEEEEcCC-ccchHHHHHHHcCCCEEEeecc-Hhhc--cCCCCEEEEECC
Confidence 46789999976666543 1 379999998875 8999999999999999776542 2222 236888887544
No 13
>PRK08296 hypothetical protein; Provisional
Probab=96.35 E-value=0.0072 Score=71.89 Aligned_cols=96 Identities=19% Similarity=0.170 Sum_probs=69.8
Q ss_pred eeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEecCCCCCCchhhhhhhccCCceeeEecch
Q 003754 348 VISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQ 425 (798)
Q Consensus 348 ~ispg~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~Eeip--~~V~GVit~~~~~~LSHv~vrARn~gVp~a~~~d~ 425 (798)
.+|||.+.|.+++|....+.. ....+.|||+...+-.. +| ..+.||||..-. .+||.++.||+.|||-+..-..
T Consensus 504 ~~s~G~v~G~vrvv~~~~~~~--~~~~g~ILV~~~tdP~~-~~~~~~~~GiVte~Gg-~~SHaAIvARe~GIPaVvgv~~ 579 (603)
T PRK08296 504 AASPGVVEGPARVIRSADELS--EVQEGEILVCPVTSPSW-APIFAKIKATVTDIGG-VMSHAAIVCREYGLPAVVGTGN 579 (603)
T ss_pred ecCCCeEEEEEEEeCCHHHHH--hccCceEEEeCCCCHHH-HHHHHHheEEEEecCC-CcchHHHHHHHcCCCEEEcCcc
Confidence 358999999999998866542 23467899998544322 44 279999998765 8999999999999998765432
Q ss_pred HHHHHHHhcCCCeEEEEEcCCceEE
Q 003754 426 NILRNLRLKEGKAVSIRLKSTNLII 450 (798)
Q Consensus 426 ~~~~~l~~~~Gk~V~l~vs~~~~~~ 450 (798)
... +-.+|..|.+..+.+.|.+
T Consensus 580 -at~--~l~dG~~V~vDg~~G~V~i 601 (603)
T PRK08296 580 -ATK--RIKTGQRLRVDGTKGVVTI 601 (603)
T ss_pred -Hhh--hcCCCCEEEEECCCCEEEE
Confidence 111 1247999998887765553
No 14
>PRK05865 hypothetical protein; Provisional
Probab=94.85 E-value=0.086 Score=65.39 Aligned_cols=94 Identities=17% Similarity=0.077 Sum_probs=67.7
Q ss_pred eeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEecCCCCCCchhhhhhhccCCceeeEecchH
Q 003754 349 ISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQN 426 (798)
Q Consensus 349 ispg~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~Eeip--~~V~GVit~~~~~~LSHv~vrARn~gVp~a~~~d~~ 426 (798)
++||.+.|++++|.. .+ ......+.|||+...+-.. +| ..+.||||..-. .+||.++.||..|||-+.+-..
T Consensus 741 ~s~G~v~G~vrvv~~-~~--~~~~~~g~ILVa~~tdp~~-~~~~~~a~giVte~Gg-~~SH~AIvARe~gIPaVvgv~~- 814 (854)
T PRK05865 741 VCGGRVRGRVRIVRP-ET--IDDLQPGEILVAEVTDVGY-TAAFCYAAAVVTELGG-PMSHAAVVAREFGFPCVVDAQG- 814 (854)
T ss_pred ccCCccEEEEEEecH-HH--hhhcCCCeEEEeCCCCHHH-HHHHHHheEEEeccCC-CccHHHHHHHHcCCCEEEcccc-
Confidence 588899999999972 22 1234567899998433222 33 269999998765 8999999999999999875542
Q ss_pred HHHHHHh-cCCCeEEEEEcCCceEEe
Q 003754 427 ILRNLRL-KEGKAVSIRLKSTNLIIS 451 (798)
Q Consensus 427 ~~~~l~~-~~Gk~V~l~vs~~~~~~~ 451 (798)
..+. .+|+.|.+..+.+.+.+-
T Consensus 815 ---at~~l~dG~~V~vDg~~G~V~~l 837 (854)
T PRK05865 815 ---ATRFLPPGALVEVDGATGEIHVV 837 (854)
T ss_pred ---HhhcCCCCCEEEEECCCcEEEEe
Confidence 1222 489999998887666653
No 15
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=94.81 E-value=0.046 Score=67.43 Aligned_cols=95 Identities=16% Similarity=0.206 Sum_probs=69.8
Q ss_pred CCceeeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEecCCCCCCchhhhhhhccCCceeeE
Q 003754 344 GCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFAT 421 (798)
Q Consensus 344 ~~wq~ispg~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~Eeip~--~V~GVit~~~~~~LSHv~vrARn~gVp~a~ 421 (798)
..=..++||.+.|.++++....+.. ....+.|||++..+-+. +|. .+.||||..-. ..||.++.||+.|||-+.
T Consensus 355 ~~G~~~~~G~~~G~v~v~~~~~d~~--~~~~g~ILV~~~~~p~~-~~~l~~~~giVte~Gg-~tSH~AivAR~lgIPavv 430 (782)
T TIGR01418 355 VTGRAAGPGIASGKVKVIFDLKEMD--KFEEGDILVTDMTDPDW-EPAMKRASAIVTNEGG-MTCHAAIVARELGIPAVV 430 (782)
T ss_pred ecCcccCCCceEEEEEEeCCHHHHH--hcCCCeEEEECCCCHHH-HHHhHhheEEEEcCCC-CccHHHHHHHhcCCCEEE
Confidence 3455679999999999999877643 34567799998544332 442 79999998776 899999999999999865
Q ss_pred ecchHHHHHHHhcCCCeEEEEEcC
Q 003754 422 CFDQNILRNLRLKEGKAVSIRLKS 445 (798)
Q Consensus 422 ~~d~~~~~~l~~~~Gk~V~l~vs~ 445 (798)
.-. +....+ .+|..|.+....
T Consensus 431 g~~-~~~~~l--~~G~~v~vDg~~ 451 (782)
T TIGR01418 431 GTG-DATKTL--KDGMEVTVDCAE 451 (782)
T ss_pred ccc-chhhcc--cCCCEEEEEcCC
Confidence 432 222222 369999988876
No 16
>PRK06354 pyruvate kinase; Provisional
Probab=94.58 E-value=0.045 Score=65.23 Aligned_cols=92 Identities=12% Similarity=0.181 Sum_probs=67.0
Q ss_pred eeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEecCCCCCCchhhhhhhccCCceeeEecchHH
Q 003754 350 SPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNI 427 (798)
Q Consensus 350 spg~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~Eeip~--~V~GVit~~~~~~LSHv~vrARn~gVp~a~~~d~~~ 427 (798)
+||.+.|.++++....+. ..+..|.||+++..+- +.+|. .+.||||..-. ..||.++.||.+|||-+..-...
T Consensus 489 s~G~~~G~v~~~~~~~~~--~~~~~~~ILV~~~~~P-~~~~~~~~~~GiVt~~Gg-~tSH~AIvAR~lgIPaVvg~~~~- 563 (590)
T PRK06354 489 GRKSVSGKARVAKTAAEV--AKVNEGDILVTPSTDA-DMIPAIEKAAAIITEEGG-LTSHAAVVGLRLGIPVIVGVKNA- 563 (590)
T ss_pred ccccccceEEEeCChHhh--ccCCCCeEEEeCCCCH-HHHHhHHhcEEEEEecCC-CcchHHHHHHhcCCCEEEeccch-
Confidence 678889999888875543 3456788999986555 34553 79999998765 89999999999999997754422
Q ss_pred HHHHHhcCCCeEEEEEcCCce
Q 003754 428 LRNLRLKEGKAVSIRLKSTNL 448 (798)
Q Consensus 428 ~~~l~~~~Gk~V~l~vs~~~~ 448 (798)
.. .-.+|.+|.+....+.+
T Consensus 564 ~~--~l~~G~~v~vDg~~G~V 582 (590)
T PRK06354 564 TS--LIKDGQIITVDAARGVV 582 (590)
T ss_pred hh--ccCCCCEEEEECCCCEE
Confidence 22 12469999887765433
No 17
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=94.46 E-value=0.045 Score=67.53 Aligned_cols=98 Identities=14% Similarity=0.123 Sum_probs=67.7
Q ss_pred CceeeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEecCCCCCCchhhhhhhccCCceeeE-
Q 003754 345 CWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFAT- 421 (798)
Q Consensus 345 ~wq~ispg~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~Eeip--~~V~GVit~~~~~~LSHv~vrARn~gVp~a~- 421 (798)
.=..++||.++|.++++....+.. ....+.|||++..+= ++++ ..+.||||..-. ..||.++.||++|||-+.
T Consensus 358 ~G~~~~~G~~~G~v~v~~~~~~~~--~~~~g~ILV~~~~~p-~~~~~l~~~~givt~~Gg-~tSH~AilAR~lgIPavvg 433 (795)
T PRK06464 358 EGRAIGPGIGSGKVRVILDISEMD--KVQPGDVLVTDMTDP-DWEPVMKRASAIVTNRGG-RTCHAAIIARELGIPAVVG 433 (795)
T ss_pred eCcccCCCceeeEEEEeCCHHHHH--hcCCCeEEEECCCCH-HHHHHHHhheEEEEcCCC-CcchHHHHHHHcCCCEEEc
Confidence 445578999999999998776654 234567999884333 2233 279999998775 899999999999999754
Q ss_pred ecchHHHHHHHhcCCCeEEE---EEcCCceEE
Q 003754 422 CFDQNILRNLRLKEGKAVSI---RLKSTNLII 450 (798)
Q Consensus 422 ~~d~~~~~~l~~~~Gk~V~l---~vs~~~~~~ 450 (798)
|.+ ....+ .+|..|.+ ....+.+..
T Consensus 434 ~~~--~~~~l--~~G~~v~v~~~Dg~~G~v~~ 461 (795)
T PRK06464 434 TGN--ATEVL--KDGQEVTVSCAEGDTGYVYE 461 (795)
T ss_pred cCc--cccee--cCCCEEEEEeccCCCcEEEe
Confidence 222 22222 36999988 554433333
No 18
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=94.37 E-value=0.072 Score=62.83 Aligned_cols=100 Identities=14% Similarity=0.128 Sum_probs=66.4
Q ss_pred CCCceeeeeeeEEEEEEE-ecccccccccccCCCeEEEEeCCCCccccCC--CcEEEecCCCCCCchhhhhhhccCCcee
Q 003754 343 LGCWQVISPVEVCGFITS-VNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCF 419 (798)
Q Consensus 343 ~~~wq~ispg~a~G~L~~-V~~l~~~~~~~~~~p~Ill~~~~~G~Eeip~--~V~GVit~~~~~~LSHv~vrARn~gVp~ 419 (798)
+..=..++||.+.|+++. .++..+.. ....+.|||+...+-+. ++. .+.||||..-. ..||.++.||++|||-
T Consensus 350 l~~G~~as~G~a~G~V~~~~~~~~~~~--~~~~g~ILV~~~t~P~~-~~~~~~a~GIVte~Gg-~tSHaAivARelgiP~ 425 (530)
T PRK05878 350 LAKGLPACPGVVSGTAYTDVDEALDAA--DRGEPVILVRDHTRPDD-VHGMLAAQGIVTEVGG-ATSHAAVVSRELGRVA 425 (530)
T ss_pred eccCeeccCceEEEEEEECHHHHHHHh--hccCCEEEEECCCCHHH-HhhhHhheEEEEccCC-ccchHHHHHHHcCCCE
Confidence 345566899999999864 22222211 22356788887433322 442 69999998776 8999999999999999
Q ss_pred eEecchHHHHHHHhcCCCeEEEEEcCCceE
Q 003754 420 ATCFDQNILRNLRLKEGKAVSIRLKSTNLI 449 (798)
Q Consensus 420 a~~~d~~~~~~l~~~~Gk~V~l~vs~~~~~ 449 (798)
+..-... ...+ ..|..|.+......|.
T Consensus 426 VvG~~~~-~~~~--~~G~~VtvDg~~G~V~ 452 (530)
T PRK05878 426 VVGCGAG-VAAA--LAGKEITVDGYEGEVR 452 (530)
T ss_pred EEcccch-hhcc--CCCCEEEEECCCCEEE
Confidence 8754322 2223 4699999877664443
No 19
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=94.28 E-value=0.068 Score=62.23 Aligned_cols=67 Identities=22% Similarity=0.261 Sum_probs=49.1
Q ss_pred CCCeEEEEeCCCCccccCC---------CcEEEecCCCCCCchhhhhhhccCCceeeEecchHHHHHHHhcCCCeEEEEE
Q 003754 373 RRPTIIIASRITGEEEIPV---------GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRL 443 (798)
Q Consensus 373 ~~p~Ill~~~~~G~Eeip~---------~V~GVit~~~~~~LSHv~vrARn~gVp~a~~~d~~~~~~l~~~~Gk~V~l~v 443 (798)
++|.||+++ |+.| +|.||+|..-. ..||.+++||.+|||-++=-. +.+. .-.+|..|-+..
T Consensus 395 ~~~~ILVA~------dLtPSd~a~Ld~~~V~Givt~~GG-~TSHtAILARslgIPaVvg~~-~~~~--~~~~G~~vilDG 464 (473)
T PRK11377 395 NSPTILLAE------NIYPSTVLQLDPAVVKGICLSAGS-PLSHSAIIARELGIGWICQQG-EKLY--AIQPEETLTLDV 464 (473)
T ss_pred CCCEEEEEC------CCCHHHHHhcCHhHeEEEEECCCC-cccHHHHHHHHcCCCEEEcch-hhHh--hccCCCEEEEEC
Confidence 578899998 6765 69999998876 899999999999999754222 1222 224688888877
Q ss_pred cCCceE
Q 003754 444 KSTNLI 449 (798)
Q Consensus 444 s~~~~~ 449 (798)
..+.+.
T Consensus 465 ~~G~v~ 470 (473)
T PRK11377 465 KTQRLN 470 (473)
T ss_pred CCCEEE
Confidence 664443
No 20
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=93.87 E-value=0.076 Score=65.96 Aligned_cols=105 Identities=18% Similarity=0.172 Sum_probs=67.2
Q ss_pred CceeeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEecCCCCCCchhhhhhhccCCceeeEe
Q 003754 345 CWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATC 422 (798)
Q Consensus 345 ~wq~ispg~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~Eeip~--~V~GVit~~~~~~LSHv~vrARn~gVp~a~~ 422 (798)
.=...+||.++|++++...-.... ....++.|||....+-+ +++- .+.||||..-. ..||.++.||++|||-++.
T Consensus 390 ~G~~aspG~a~G~v~~~~~~a~~~-~~~~~~~ILV~~~t~P~-d~~~~~~a~Givt~~GG-~tSHaAivAR~lgiP~VvG 466 (856)
T TIGR01828 390 KGLPASPGAATGKIVFSAEDAVEL-AEKGKKVILVREETSPE-DIEGMHVAEGILTARGG-MTSHAAVVARGMGKCCVSG 466 (856)
T ss_pred cCcccCCCeEEEEEEEchHHHHHH-hhcCCCEEEEECCCCHH-HHhhhhhheEEEEccCC-CcchHHHHHHHcCCCEEEc
Confidence 444569999999997763321111 12345678888743322 2442 68999998876 8999999999999999764
Q ss_pred cchHHHHH---------HHhcCCCeEEEEEcCCceEEee
Q 003754 423 FDQNILRN---------LRLKEGKAVSIRLKSTNLIISD 452 (798)
Q Consensus 423 ~d~~~~~~---------l~~~~Gk~V~l~vs~~~~~~~~ 452 (798)
-....++. -.-..|..|.+..+.+.+...+
T Consensus 467 ~~~~~id~~~~~~~~~~~~l~~Gd~VtvDg~~G~V~~g~ 505 (856)
T TIGR01828 467 CEELKINEEAKTFTIGGRVFHEGDIISIDGSTGEIYLGE 505 (856)
T ss_pred ccccccccccceeeeCCeEecCCCEEEEECCCCEEEECC
Confidence 33211110 1124688888887765555443
No 21
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=93.44 E-value=0.075 Score=65.98 Aligned_cols=106 Identities=18% Similarity=0.146 Sum_probs=66.4
Q ss_pred CceeeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEecCCCCCCchhhhhhhccCCceeeEe
Q 003754 345 CWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATC 422 (798)
Q Consensus 345 ~wq~ispg~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~Eeip~--~V~GVit~~~~~~LSHv~vrARn~gVp~a~~ 422 (798)
.=...|||.|+|++++...-..-. ....++.|||... .--++++- .+.||||..-. ..||.+|.||++|+|-++.
T Consensus 396 ~G~~aspGaa~G~v~~~~~~a~~~-~~~~~~~ILV~~e-t~P~di~~m~~a~GIvT~~GG-~TSHAAIVAR~lGiP~VvG 472 (879)
T PRK09279 396 KGLPASPGAATGKIVFTADEAEAL-AARGEKVILVRPE-TSPEDIHGMHAAEGILTARGG-MTSHAAVVARGMGKPCVVG 472 (879)
T ss_pred CCcccCCCeEEEEEEEChHHHHHh-hccCCCEEEEECC-CCHHHHhhhhHeeEEEEeCCC-ccchHHHHHHHcCCCEEec
Confidence 344569999999997743221111 1224567777763 22333442 58999998776 8999999999999999664
Q ss_pred cchHHHH---------HHHhcCCCeEEEEEcCCceEEeec
Q 003754 423 FDQNILR---------NLRLKEGKAVSIRLKSTNLIISDI 453 (798)
Q Consensus 423 ~d~~~~~---------~l~~~~Gk~V~l~vs~~~~~~~~~ 453 (798)
-..-.++ .-.-..|.+|.+..+.+.|...+.
T Consensus 473 ~~~~~id~~~~~~~~~~~~l~~Gd~VtIDG~~G~V~~g~~ 512 (879)
T PRK09279 473 AGALRIDEKAKTFTVGGGTLKEGDVITIDGSTGEVYLGEV 512 (879)
T ss_pred cCcceEecccCEEEECCEEecCCCEEEEECCCCEEEECCc
Confidence 3211111 011246888888887755555443
No 22
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=91.87 E-value=0.22 Score=59.38 Aligned_cols=77 Identities=21% Similarity=0.255 Sum_probs=53.8
Q ss_pred CCCeEEEEeCCCCcc--ccC-CCcEEEecCCCCCCchhhhhhhccCCceeeEecchHHHHHHHhcCCCeEEEEEcCCceE
Q 003754 373 RRPTIIIASRITGEE--EIP-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLI 449 (798)
Q Consensus 373 ~~p~Ill~~~~~G~E--eip-~~V~GVit~~~~~~LSHv~vrARn~gVp~a~~~d~~~~~~l~~~~Gk~V~l~vs~~~~~ 449 (798)
..|.|||++..+=.+ .++ .+|.||||..-. ..||.+++||++|||-+..-. +.... -.+|+.|.+....+.+.
T Consensus 153 ~~~~ILVa~~l~Ps~~~~l~~~~i~Givt~~Gg-~tSH~AIlAr~lgIPavvg~~-~~~~~--~~~G~~vilDg~~G~v~ 228 (575)
T PRK11177 153 QEEVILVAADLTPSETAQLNLKKVLGFITDIGG-RTSHTSIMARSLELPAIVGTG-NITKQ--VKNGDYLILDAVNNQIY 228 (575)
T ss_pred CCCeEEEecCCCHHHHhhhhhhheeEEEEcCCC-cccHHHHHHHHcCCCEEEcCh-hHHhh--ccCCCEEEEECCCCEEE
Confidence 467888888444333 111 369999998776 899999999999999765443 22222 23699999888776666
Q ss_pred Eeec
Q 003754 450 ISDI 453 (798)
Q Consensus 450 ~~~~ 453 (798)
+.+.
T Consensus 229 ~~P~ 232 (575)
T PRK11177 229 VNPT 232 (575)
T ss_pred ECCC
Confidence 6654
No 23
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=91.44 E-value=0.26 Score=58.73 Aligned_cols=77 Identities=22% Similarity=0.182 Sum_probs=52.6
Q ss_pred CCCeEEEEeCCCCccccC---CCcEEEecCCCCCCchhhhhhhccCCceeeEecchHHHHHHHhcCCCeEEEEEcCCceE
Q 003754 373 RRPTIIIASRITGEEEIP---VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLI 449 (798)
Q Consensus 373 ~~p~Ill~~~~~G~Eeip---~~V~GVit~~~~~~LSHv~vrARn~gVp~a~~~d~~~~~~l~~~~Gk~V~l~vs~~~~~ 449 (798)
..|.|||++..+=.+=+. .++.||+|..-. ..||.++.||++|||-+..-. +.... -.+|..|.+....+.+.
T Consensus 152 ~~~~IlVa~~l~Ps~~~~l~~~~i~Givt~~Gg-~tSH~aIlAR~lgIP~vvg~~-~~~~~--~~~G~~v~vDg~~G~v~ 227 (565)
T TIGR01417 152 QDEVILVAEDLTPSETAQLNLKYVKGFLTDAGG-KTSHTAIMARSLEIPAIVGTK-SVTSQ--VKNGDTVIIDGVKGIVI 227 (565)
T ss_pred CCCeEEEecCCCHHHHHHhhhhheeEEEEccCC-CcchHHHHHHHcCCCEEEcch-hHHhh--CCCCCEEEEECCCCEEE
Confidence 467888888322222111 269999998765 899999999999999766433 22222 23699999988876666
Q ss_pred Eeec
Q 003754 450 ISDI 453 (798)
Q Consensus 450 ~~~~ 453 (798)
+.+.
T Consensus 228 ~~P~ 231 (565)
T TIGR01417 228 FNPS 231 (565)
T ss_pred eCCC
Confidence 6553
No 24
>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]
Probab=90.89 E-value=0.28 Score=45.54 Aligned_cols=98 Identities=14% Similarity=0.211 Sum_probs=69.6
Q ss_pred ceeeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEecCCCCCCchhhhhhhccCCceeeEec
Q 003754 346 WQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCF 423 (798)
Q Consensus 346 wq~ispg~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~Eeip~--~V~GVit~~~~~~LSHv~vrARn~gVp~a~~~ 423 (798)
=|.|-.|.+.|+.++-++-.+...+ +.+-.||++...|+| -+|. ...||||.+.. .-||-+|-+++.|||.+.=.
T Consensus 5 GqgIg~gsv~G~~~vA~~~~~~~~k-~~~g~iLv~~std~d-~v~~~eKa~aiItee~g-lTshaAVvgl~LgvPvIvG~ 81 (111)
T COG3848 5 GQGIGRGSVSGRAVVADSGKEAEQK-FEEGVILVTPSTDAD-FVPALEKAAAIITEEGG-LTSHAAVVGLELGVPVIVGV 81 (111)
T ss_pred ceeecccceeeEEEEccCHhHhhCC-cccCcEEEeccCChh-hHHHHHhhheeEeccCC-ccccceeeEeecCCcEEEEe
Confidence 3677888999999888876664322 345678888865554 4775 79999999988 99999999999999997744
Q ss_pred chHHHHHHHhcCCCeEEEEEcCCceEE
Q 003754 424 DQNILRNLRLKEGKAVSIRLKSTNLII 450 (798)
Q Consensus 424 d~~~~~~l~~~~Gk~V~l~vs~~~~~~ 450 (798)
+.. .+.+ .+|..|.+..+- |+.+
T Consensus 82 ~~a-t~~i--~dG~~vTvD~~r-G~VY 104 (111)
T COG3848 82 KKA-TQLI--RDGAIVTVDAQR-GVVY 104 (111)
T ss_pred cch-hhhc--cCCCEEEEeccc-ceEE
Confidence 422 2211 368877766543 4444
No 25
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=90.11 E-value=0.37 Score=59.32 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=52.4
Q ss_pred CCCeEEEEeCCCCccccC----CCcEEEecCCCCCCchhhhhhhccCCceeeEecchHHHHHHHhcCCCeEEEEEcCCce
Q 003754 373 RRPTIIIASRITGEEEIP----VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNL 448 (798)
Q Consensus 373 ~~p~Ill~~~~~G~Eeip----~~V~GVit~~~~~~LSHv~vrARn~gVp~a~~~d~~~~~~l~~~~Gk~V~l~vs~~~~ 448 (798)
..|.||+++..+-.+ ++ .+|+||+|..-. ..||.++.||++|||.+.=-+ .... ...|..|.+....+.+
T Consensus 320 ~~~~Ilva~~l~ps~-~~~l~~~~i~Givt~~Gg-~tSH~aIlAr~lgIP~vvg~~--~~~~--~~~G~~vilDg~~G~v 393 (748)
T PRK11061 320 PERFILVADELTATL-LAELPQDRLAGVVVRDGA-ANSHAAILVRALGIPTVMGAD--IQPS--LLHQRLLIVDGYRGEL 393 (748)
T ss_pred CCCEEEEECCCCHHH-HHhhhhhheEEEEECCCC-CccHHHHHHHHcCCCEEEcCc--chhh--ccCCCEEEEECCCCEE
Confidence 467888888322222 11 169999998876 889999999999999754222 2222 2359999988877666
Q ss_pred EEeecC
Q 003754 449 IISDIS 454 (798)
Q Consensus 449 ~~~~~~ 454 (798)
.+.+..
T Consensus 394 ~vnP~~ 399 (748)
T PRK11061 394 LVDPEP 399 (748)
T ss_pred EeCCCH
Confidence 676643
No 26
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=89.28 E-value=0.58 Score=55.18 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=56.0
Q ss_pred CCCeEEEEeCCCCccccCC---------CcEEEecCCCCCCchhhhhhhccCCceeeEecchHHHHHHHhcCCCeEEEEE
Q 003754 373 RRPTIIIASRITGEEEIPV---------GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRL 443 (798)
Q Consensus 373 ~~p~Ill~~~~~G~Eeip~---------~V~GVit~~~~~~LSHv~vrARn~gVp~a~~~d~~~~~~l~~~~Gk~V~l~v 443 (798)
++|+||+++ |+.| .|.|++|..-. ..||.++.||..+||-+.-.... ...+ .+|+.|-+..
T Consensus 154 ~~~~IlvA~------dLtPSdta~l~~~~v~Gfvt~~GG-~TSHtAImARsl~IPavVg~~~~-~~~v--~~g~~viiDg 223 (574)
T COG1080 154 DEEVILVAE------DLTPSDTAQLDKKYVKGFVTDIGG-RTSHTAILARSLGIPAVVGLGAA-TLAV--KDGDTLILDG 223 (574)
T ss_pred CCCeEEEEC------CCCHHHHhhcCHhhceeeEecCCC-cccHHHHHHHhcCCCeeecCcHH-hhcc--cCCCEEEEEC
Confidence 567899998 7775 59999998766 88999999999999997755533 2323 3899999988
Q ss_pred cCCceEEeec
Q 003754 444 KSTNLIISDI 453 (798)
Q Consensus 444 s~~~~~~~~~ 453 (798)
..+.+.+.+.
T Consensus 224 ~~G~vi~nP~ 233 (574)
T COG1080 224 INGEVIVNPD 233 (574)
T ss_pred CCCeEEECcC
Confidence 8877777664
No 27
>PRK03955 hypothetical protein; Reviewed
Probab=79.15 E-value=6.8 Score=38.21 Aligned_cols=95 Identities=14% Similarity=0.199 Sum_probs=63.9
Q ss_pred eeeeeeeEEEEEEEeccccc----cc-------ccccC------CCeEEEEeCCCCcc--------ccCC--CcEEEecC
Q 003754 347 QVISPVEVCGFITSVNELIT----LQ-------NKVYR------RPTIIIASRITGEE--------EIPV--GVVAVLTP 399 (798)
Q Consensus 347 q~ispg~a~G~L~~V~~l~~----~~-------~~~~~------~p~Ill~~~~~G~E--------eip~--~V~GVit~ 399 (798)
..+++|.+.|++.+.++--. +. +..-+ .-.|+++....|-- -+-. .=+|+|..
T Consensus 6 ~~~~~G~~~Ge~lv~~~~lSf~ggvd~~tG~iid~~h~l~G~si~gkIlv~p~~kGSt~gs~vl~~l~~~g~aP~aiI~~ 85 (131)
T PRK03955 6 RIISKGKAEGEVIVSKKPISFLGGVDPETGIVIDKEHDLYGESIKGKILVFPHGKGSTVGSYVIYQLAKNGTAPKAIINL 85 (131)
T ss_pred EEEeccEEEEEEEEeCCCccccccccCCCCEEEecCCCcCCCccCCEEEEEeCCCcccchHHHHHHHHHcCCCceEEEEe
Confidence 56899999999888764221 11 11100 23688888777762 1111 24688998
Q ss_pred CCCCCchhhhhhhccCCceeeEecchHHHHHHHhcCCCeEEEEEcCCceE
Q 003754 400 DMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLI 449 (798)
Q Consensus 400 ~~~~~LSHv~vrARn~gVp~a~~~d~~~~~~l~~~~Gk~V~l~vs~~~~~ 449 (798)
+.-+++||-++-| +||.+...+ .+.|+ +|.+|++..+...+.
T Consensus 86 ~~~~ils~GaIvA---gIP~V~~~~---~~~l~--~G~~V~Vdg~~G~V~ 127 (131)
T PRK03955 86 EAEPIVATGAIIS---GIPLVDKVD---ISKLK--DGDRVVVDGDEGEVE 127 (131)
T ss_pred cCCceeEeeeeec---CCceEcccc---ceecC--CCCEEEEeCCCCEEE
Confidence 8888999999999 999998666 33332 899999876554444
No 28
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=68.03 E-value=3.9 Score=48.51 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=52.9
Q ss_pred ccccCCCeEEEEeCCCCcc--ccC-CCcEEEecCCCCCCchhhhhhhccCCceeeEe-cchHHHHHHHhcCCCeEEEEEc
Q 003754 369 NKVYRRPTIIIASRITGEE--EIP-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATC-FDQNILRNLRLKEGKAVSIRLK 444 (798)
Q Consensus 369 ~~~~~~p~Ill~~~~~G~E--eip-~~V~GVit~~~~~~LSHv~vrARn~gVp~a~~-~d~~~~~~l~~~~Gk~V~l~vs 444 (798)
...|.++.|+|++..+-.| |.| ...+||++.+-. .-||+++.||.+|||.+-= .+- ..+..+|+.+-+.--
T Consensus 323 ~~~~pe~aIlVarel~aa~L~e~Pr~rL~GvVl~dGa-anSH~aIvaRAmGIP~V~~a~~i----~~~~~n~~~~IVDG~ 397 (756)
T COG3605 323 ANAWPEDAILVARELGAAELLEYPRDRLRGVVLEDGA-ANSHAAIVARAMGIPTVMGAAGI----VPSVLNGDALIVDGY 397 (756)
T ss_pred hhcCCcceEEEecccCHHHHhhCchhhheeeeeecCc-ccchHHHHHHhcCCceeccccCc----chhhhcCCcEEEECC
Confidence 4557788999998544443 344 269999987754 7899999999999998763 221 123356666655544
Q ss_pred CCceEEee
Q 003754 445 STNLIISD 452 (798)
Q Consensus 445 ~~~~~~~~ 452 (798)
...+.+++
T Consensus 398 ~gev~l~P 405 (756)
T COG3605 398 RGEVHLRP 405 (756)
T ss_pred cceEEeCC
Confidence 44455554
No 29
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=66.64 E-value=2.5 Score=52.14 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=69.4
Q ss_pred ccccccccHHHHhhhhhHHHHHHHhhhHHHHHHHhcCCCceeeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCc
Q 003754 307 KYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGE 386 (798)
Q Consensus 307 ~~~~~~F~ee~IR~~~~f~ls~l~~~l~~~lr~~a~~~~wq~ispg~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~ 386 (798)
+|.++- .+.++|+.+.-..+.+-...++ ...-..++. .+||.+.|.++++....+. ......+||+....+.|
T Consensus 305 Ew~id~-~~~ilq~rP~t~~~~~~~~~~~---~~~~~~g~g-a~~g~~~G~v~~~~d~~e~--~~~~~g~iLv~~~t~pd 377 (740)
T COG0574 305 EWAIDG-KLYILQARPETVLSLLHPVEDR---GRALLKGIG-ASPGIASGRVKIILDVSEM--EKLEHGDILVTPMTDPD 377 (740)
T ss_pred hhhhcC-ceEEEEecCccccccccccccc---ccceeeeee-ccCCceeEEEEEEecHHHh--cccccCceEEeecCCHH
Confidence 455554 5557777777666666555555 111122333 8999999999888776654 22234568887743333
Q ss_pred cccCC--CcEEEecCCCCCCchhhhhhhccCCceeeEe
Q 003754 387 EEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATC 422 (798)
Q Consensus 387 Eeip~--~V~GVit~~~~~~LSHv~vrARn~gVp~a~~ 422 (798)
.+|. .-.||+|.+-. ..||-++.||.+|+|-+.=
T Consensus 378 -~~~~m~~a~~Ivt~~Gg-~tshaaivaRe~g~Pavvg 413 (740)
T COG0574 378 -WVPLMKVAGAIVTDRGG-MTSHAAIVARELGIPAVVG 413 (740)
T ss_pred -HhhhhhhccceEEcCCC-ccccchhhhhhcCCCeEEc
Confidence 3443 45567765554 9999999999999999653
No 30
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=51.03 E-value=28 Score=36.47 Aligned_cols=45 Identities=24% Similarity=0.405 Sum_probs=38.0
Q ss_pred CCcCCcccchHHHHHHHHHHHHHHHhcC--CCeeEEEEEE--CCEEEEEeeccC
Q 003754 748 PMVGDKSFQTSVFSKIAETGKIIESLYG--YPQDIEGVLK--DGLIYVVQARPQ 797 (798)
Q Consensus 748 p~L~D~~~r~~~l~~La~la~~IE~~fG--~PQDIEwai~--~g~LyIlQaRP~ 797 (798)
+.|+++. .++|.+.+.+|-+.+| .+--|||+++ ++++|++...|-
T Consensus 131 ~~L~~~~-----~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNpR 179 (211)
T PF02786_consen 131 QTLSDEE-----RQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNPR 179 (211)
T ss_dssp SSS-HHH-----HHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEESS
T ss_pred cccchHH-----HHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccCC
Confidence 4566654 7899999999999987 6999999999 799999998873
No 31
>PF07067 DUF1340: Protein of unknown function (DUF1340); InterPro: IPR009774 This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 235 residues in length. The function of this family is unknown.
Probab=46.65 E-value=1.1e+02 Score=31.76 Aligned_cols=61 Identities=18% Similarity=0.350 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhccccCCCCChhhHHHHHHHHHhhccccCCCchHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHH
Q 003754 201 LASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQ 278 (798)
Q Consensus 201 l~~~~r~~~e~~~~~~~~~~~~~~~~~~~~~l~nl~ls~~~n~el~~~l~~w~~~~~~~~~~~~~wal~~kA~ldr~r 278 (798)
-.+.+||+|...|-..+.+.|-.+..+=.++ ++||.--+... --.+.+|.-++.+-+||.-
T Consensus 148 ~An~i~taiNt~YtE~giltPrKvIQlEGLL----------SRELfgkiaky-------VfNkYEWpesLD~EVdRI~ 208 (236)
T PF07067_consen 148 QANTIRTAINTCYTEIGILTPRKVIQLEGLL----------SRELFGKIAKY-------VFNKYEWPESLDSEVDRIY 208 (236)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHhHH----------HHHHHHHHHHH-------HhccccCchhhHhhhhhhe
Confidence 3567999999999999999998877766665 45554322211 2346789999999999873
No 32
>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
Probab=45.64 E-value=26 Score=37.38 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=22.7
Q ss_pred CChhhHHHHhhhC-CCChhhhhcCCCCc
Q 003754 64 FKIDAYWQTLNCH-GLSKQKLASYDRPI 90 (798)
Q Consensus 64 ~~~~~~w~~l~~~-g~t~e~l~~~~r~i 90 (798)
.|.-++|..+-+. |+|+|++.|++ |.
T Consensus 91 ~~hidlwlr~aeAlGvs~eei~s~e-pl 117 (242)
T COG5424 91 PNHIDLWLRLAEALGVSREEILSHE-PL 117 (242)
T ss_pred ccHHHHHHHHHHHcCCCHHHHhhcC-CC
Confidence 3677899999996 99999999998 54
No 33
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=32.26 E-value=4.8e+02 Score=35.25 Aligned_cols=152 Identities=16% Similarity=0.061 Sum_probs=82.5
Q ss_pred HhHHHHHHHhhhccccc---CCCCCchhhhhHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHHHHhhccccCCCch-H
Q 003754 169 LMEKLVDSRIELHPVLG---TARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNE-D 244 (798)
Q Consensus 169 ~~~~~~e~r~~l~~~~~---~~~~~~~d~~~ld~al~~~~r~~~e~~~~~~~~~~~~~~~~~~~~~l~nl~ls~~~n~-e 244 (798)
-.+-++-.|+...-+|- .++..+|-.| ++...|.|-+|- .+.. +|||++.++.-|||||.+-.|.|- +
T Consensus 360 nd~~~~aLRrYa~MALTNLTFGDv~NKa~L---Cs~rgfMeavVA----QL~s-~peeL~QV~AsvLRNLSWRAD~nmKk 431 (2195)
T KOG2122|consen 360 NDGECNALRRYAGMALTNLTFGDVANKATL---CSQRGFMEAVVA----QLIS-APEELLQVYASVLRNLSWRADSNMKK 431 (2195)
T ss_pred CcHHHHHHHHHHHHHhhccccccccchhhh---hhhhhHHHHHHH----HHhc-ChHHHHHHHHHHHHhccccccccHHH
Confidence 34456666776654443 2233344333 444444444432 2333 589999999999999999988653 2
Q ss_pred HHHHHHHHHHhhhh---ccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHh--hCchHHHHhhhcCcc--ccccccccHHH
Q 003754 245 LIYCTKDWYRVSES---YRTNDAQWALQAKAILDRLQLVLAERSQTYQKK--FQPSVKYLGCLLGVE--KYVIDNFTEEL 317 (798)
Q Consensus 245 l~~~l~~w~~~~~~---~~~~~~~wal~~kA~ldr~r~~~~~~~~~~~~~--~~~~a~~lg~~lg~e--~~~~~~F~ee~ 317 (798)
.... -..|..+ ..+.+++ -.|||+|--.=.+-+..++.=..+ .+..-.+|-+.|.++ .+...+.--
T Consensus 432 vLrE---~GsVtaLa~~al~~~kE--sTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEs-- 504 (2195)
T KOG2122|consen 432 VLRE---TGSVTALAACALRNKKE--STLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIES-- 504 (2195)
T ss_pred HHHh---hhhHHHHHHHHHHhccc--chHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhc--
Confidence 1111 1111111 1111111 347888877666655444433333 456667888888888 444442211
Q ss_pred HhhhhhHHHHHHHhhhHHH
Q 003754 318 VRAQSEAVLSILINRFEPV 336 (798)
Q Consensus 318 IR~~~~f~ls~l~~~l~~~ 336 (798)
=+|+.-.+|.+|.-=+++
T Consensus 505 -aGGILRNVSS~IAt~E~y 522 (2195)
T KOG2122|consen 505 -AGGILRNVSSLIATCEDY 522 (2195)
T ss_pred -CccHHHHHHhHhhccchH
Confidence 255677778777655554
No 34
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=30.62 E-value=44 Score=26.35 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=17.9
Q ss_pred CCCCchHHHHHHHHHHHHcCC
Q 003754 44 NTSPDDIIICEALLNYIRCGF 64 (798)
Q Consensus 44 nttpddv~icea~l~~l~~~~ 64 (798)
.-||||-.||.++-+|-.+.|
T Consensus 14 GdteddT~v~r~l~~yY~~k~ 34 (41)
T PF14475_consen 14 GDTEDDTHVHRVLRKYYTEKG 34 (41)
T ss_pred CCCcchhHHHHHHHHHHHHcC
Confidence 468999999999999987653
No 35
>PF12280 BSMAP: Brain specific membrane anchored protein; InterPro: IPR022065 This family of proteins is found in eukaryotes. Proteins in this family are typically between 285 and 331 amino acids in length. BSMAP has a putative transmembrane domain and is predicted to be a type I membrane glycoprotein.
Probab=25.74 E-value=43 Score=35.24 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=16.5
Q ss_pred eEEEEE----ECCEEEEEeeccCC
Q 003754 779 DIEGVL----KDGLIYVVQARPQM 798 (798)
Q Consensus 779 DIEwai----~~g~LyIlQaRP~v 798 (798)
=-=|++ +|||++|+|++|+|
T Consensus 92 sStWTfYLQaDdGKvVVfQsqp~i 115 (207)
T PF12280_consen 92 SSTWTFYLQADDGKVVVFQSQPEI 115 (207)
T ss_pred cceeEEEEEcCCCCEEEEeccccc
Confidence 446888 48999999999975
No 36
>COG3160 Rsd Regulator of sigma D [Transcription]
Probab=21.84 E-value=2.7e+02 Score=27.79 Aligned_cols=13 Identities=31% Similarity=0.948 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHcC
Q 003754 51 IICEALLNYIRCG 63 (798)
Q Consensus 51 ~icea~l~~l~~~ 63 (798)
.-|+.+++||.+|
T Consensus 56 ~FCq~LvDYlSaG 68 (162)
T COG3160 56 DFCQSLVDYLSAG 68 (162)
T ss_pred HHHHHHHHHHhcc
Confidence 4799999999999
Done!