Query 003756
Match_columns 797
No_of_seqs 357 out of 827
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 03:04:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003756.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003756hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 8.6E-30 2.9E-34 238.8 13.8 114 119-232 6-121 (130)
2 4i1k_A B3 domain-containing tr 99.7 2E-16 6.9E-21 151.4 11.5 96 124-229 46-143 (146)
3 1yel_A AT1G16640; CESG, protei 99.4 5.8E-13 2E-17 119.7 10.4 94 124-228 8-101 (104)
4 1na6_A Ecorii, restriction end 95.4 0.019 6.5E-07 63.1 6.7 92 124-216 18-123 (404)
5 1vd2_A Protein kinase C, IOTA 93.3 0.13 4.4E-06 45.9 6.0 56 716-778 7-62 (89)
6 2ktr_A Sequestosome-1; autopha 91.2 0.15 5E-06 47.8 3.8 60 713-779 18-94 (117)
7 1wmh_B Partitioning defective- 90.5 0.41 1.4E-05 42.7 5.9 57 716-779 7-64 (86)
8 2kkc_A Sequestosome-1; P62, PB 90.4 0.21 7.1E-06 45.6 4.0 60 714-779 4-79 (102)
9 1q1o_A Cell division control p 83.5 1.4 4.8E-05 40.1 5.2 63 716-780 6-75 (98)
10 1pqs_A Cell division control p 74.1 4 0.00014 35.5 4.9 49 730-780 6-54 (77)
11 4b8c_D Glucose-repressible alc 68.2 0.9 3.1E-05 52.6 -0.6 7 761-767 463-469 (727)
12 2bkf_A Zinc-finger protein NBR 66.9 10 0.00035 33.9 6.0 52 717-777 8-60 (87)
13 1wj6_A KIAA0049 protein, RSGI 62.1 11 0.00037 34.6 5.3 53 716-777 15-68 (101)
14 2k8i_A SLYD, peptidyl-prolyl C 61.7 24 0.00083 34.3 8.2 102 205-321 3-114 (171)
15 2kfw_A FKBP-type peptidyl-prol 60.5 11 0.00037 37.6 5.6 102 205-321 3-114 (196)
16 3cgm_A SLYD, peptidyl-prolyl C 59.1 26 0.0009 33.5 7.9 100 205-321 3-110 (158)
17 2kr7_A FKBP-type peptidyl-prol 52.8 57 0.002 30.8 9.0 105 202-321 4-119 (151)
18 1oey_J P40-PHOX, neutrophil cy 46.6 27 0.00091 32.3 5.2 40 731-779 28-67 (107)
19 1oey_A P67-PHOX, neutrophil cy 46.2 27 0.00092 30.8 5.1 64 716-788 6-70 (83)
20 3iot_A Maltose-binding protein 43.0 4.5 0.00015 43.1 -0.4 7 195-201 128-134 (449)
21 4dt4_A FKBP-type 16 kDa peptid 42.8 55 0.0019 31.9 7.2 105 204-321 24-138 (169)
22 3p8d_A Medulloblastoma antigen 40.3 39 0.0013 28.7 5.0 53 290-360 5-57 (67)
23 3pr9_A FKBP-type peptidyl-prol 34.9 2E+02 0.0069 27.5 9.7 104 205-321 2-123 (157)
24 3iot_A Maltose-binding protein 34.3 9.1 0.00031 40.8 0.3 6 40-45 6-11 (449)
25 3qii_A PHD finger protein 20; 33.9 51 0.0017 29.3 4.9 54 290-361 20-73 (85)
26 4b8c_D Glucose-repressible alc 31.9 9.6 0.00033 44.1 -0.1 6 774-779 598-603 (727)
27 3s6w_A Tudor domain-containing 29.8 46 0.0016 26.1 3.6 28 291-321 1-28 (54)
28 2jng_A Cullin-7, CUL-7; P53 bi 29.4 51 0.0018 30.4 4.3 73 274-361 6-78 (105)
29 1mhn_A SurviVal motor neuron p 29.4 53 0.0018 26.4 4.0 28 291-321 3-30 (59)
30 4a4f_A SurviVal of motor neuro 29.3 50 0.0017 27.0 3.8 42 290-343 7-48 (64)
31 2equ_A PHD finger protein 20-l 29.0 54 0.0018 28.1 4.1 39 290-342 8-46 (74)
32 2e63_A KIAA1787 protein; struc 27.5 38 0.0013 33.1 3.3 26 202-227 115-140 (170)
33 3o27_A Putative uncharacterize 24.8 48 0.0016 28.5 3.0 41 188-229 23-64 (68)
34 2vb2_X Copper protein, cation 24.7 65 0.0022 28.2 4.0 26 202-227 59-86 (88)
35 2qcp_X Cation efflux system pr 23.7 75 0.0026 27.3 4.1 26 202-227 51-78 (80)
36 2cbp_A Cucumber basic protein; 23.0 38 0.0013 30.0 2.2 19 199-217 18-36 (96)
37 2k75_A Uncharacterized protein 22.6 1.4E+02 0.0048 26.5 5.8 46 164-229 39-88 (106)
38 1g5v_A SurviVal motor neuron p 22.3 77 0.0026 28.0 4.0 29 290-321 9-37 (88)
39 2yue_A Protein neuralized; str 21.1 73 0.0025 31.0 3.9 22 206-227 107-128 (168)
40 1e8p_A Endoglucanase, dockerin 20.5 31 0.0011 27.6 0.9 14 764-777 20-33 (46)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=8.6e-30 Score=238.84 Aligned_cols=114 Identities=29% Similarity=0.462 Sum_probs=105.0
Q ss_pred CCCCCceeEEEeecccCCCCCCceeechhhhhhcCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCcceeecccccc
Q 003756 119 PSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSV 198 (797)
Q Consensus 119 ~~~~~~~~F~K~LT~SDv~~~grfsVPk~~AE~~FPpLd~~~~~p~q~L~v~D~~G~~W~FR~iyrg~prrhlLTtGWs~ 198 (797)
..+....+|+|+||+|||++++||+||+++||.|||.++..+.+++++|.++|.+|++|+|||+||+++++|+|++||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHH
Confidence 44566889999999999999999999999999999999987777899999999999999999999999999999999999
Q ss_pred cccccCCcCCCEEEEEEcc--CCcEEEEEEecCCCC
Q 003756 199 FVSAKRLVAGDSVLFIWNE--KNQLLLGIRRAIRPP 232 (797)
Q Consensus 199 FV~~KkL~aGDsVvF~R~~--~G~L~VGIRRa~r~~ 232 (797)
||++|+|++||.|+|+|.+ +++|+||+||+.++.
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 9999999999999999986 468999999998754
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.67 E-value=2e-16 Score=151.39 Aligned_cols=96 Identities=20% Similarity=0.291 Sum_probs=85.4
Q ss_pred ceeEEEeecccCCCCCCceeechhhhhhcCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCcceeeccccccccccc
Q 003756 124 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAK 203 (797)
Q Consensus 124 ~~~F~K~LT~SDv~~~grfsVPk~~AE~~FPpLd~~~~~p~q~L~v~D~~G~~W~FR~iyrg~prrhlLTtGWs~FV~~K 203 (797)
..+|.|+||+||+.+..++.||+++|+.+||..+ ..+.+.|. |+.|.|+|+|++. ++.|++||..||+++
T Consensus 46 ~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~dn 115 (146)
T 4i1k_A 46 NPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLEN 115 (146)
T ss_dssp SCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHHT
T ss_pred CCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHHc
Confidence 4599999999999887789999999999999753 57888888 6999999999974 699999999999999
Q ss_pred CCcCCCEEEEEEccCC--cEEEEEEecC
Q 003756 204 RLVAGDSVLFIWNEKN--QLLLGIRRAI 229 (797)
Q Consensus 204 kL~aGDsVvF~R~~~G--~L~VGIRRa~ 229 (797)
+|++||.++|...++. .+.|.|-|+.
T Consensus 116 ~L~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 116 NLGEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp TCCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred CCCCCCEEEEEEecCCceEEEEEEEecc
Confidence 9999999999998765 5788998875
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.42 E-value=5.8e-13 Score=119.72 Aligned_cols=94 Identities=21% Similarity=0.363 Sum_probs=81.2
Q ss_pred ceeEEEeecccCCCCCCceeechhhhhhcCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCcceeeccccccccccc
Q 003756 124 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAK 203 (797)
Q Consensus 124 ~~~F~K~LT~SDv~~~grfsVPk~~AE~~FPpLd~~~~~p~q~L~v~D~~G~~W~FR~iyrg~prrhlLTtGWs~FV~~K 203 (797)
...|.|+|+++|. ..++.||++.++.+.+.+ ...+.++|..|++|++++.+++ +++.|+.||..||+++
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~-------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF-------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCC-------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCc--cceEECCHHHHHhcCccC-------CCEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHc
Confidence 4589999999994 569999999998876543 3578999999999999999874 4789999999999999
Q ss_pred CCcCCCEEEEEEccCCcEEEEEEec
Q 003756 204 RLVAGDSVLFIWNEKNQLLLGIRRA 228 (797)
Q Consensus 204 kL~aGDsVvF~R~~~G~L~VGIRRa 228 (797)
+|++||.++|...++..+.|-|=|.
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEECS
T ss_pred CCCCCCEEEEEEcCCCeEEEEEECC
Confidence 9999999999999888888877654
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=95.41 E-value=0.019 Score=63.12 Aligned_cols=92 Identities=24% Similarity=0.336 Sum_probs=65.9
Q ss_pred ceeEEEeecccCCCCCC----ceeechhhhhhcCCCCC-CCCCCCceEEEE--EecCCCeEEEEEEEeC------CCcce
Q 003756 124 TNYFCKTLTASDTSTHG----GFSVPRRAAEKVFPSLD-FSLQPPAQELIA--RDLHDVEWKFRHIFRG------QPKRH 190 (797)
Q Consensus 124 ~~~F~K~LT~SDv~~~g----rfsVPk~~AE~~FPpLd-~~~~~p~q~L~v--~D~~G~~W~FR~iyrg------~prrh 190 (797)
...|+|.|++.|++..| +|-+|+...+.+||.|+ .....|...+.+ -|...-++.++.+|.+ ++..|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence 57899999999999864 79999988999999998 334456555553 3444455599999997 44568
Q ss_pred eeccccc-ccccccCCcCCCEEEEEEc
Q 003756 191 LLTTGWS-VFVSAKRLVAGDSVLFIWN 216 (797)
Q Consensus 191 lLTtGWs-~FV~~KkL~aGDsVvF~R~ 216 (797)
.||. |- .+.=.....+||.++|-+.
T Consensus 98 RLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 98 RITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEee-cCCCCcccccCCCCCEEEEEEe
Confidence 8873 32 2333366788998887644
No 5
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=93.32 E-value=0.13 Score=45.95 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=43.0
Q ss_pred cEEEEecccccceecccCCCCCHHHHHHHHHhhhCCCCccCCCCCCccEEEEEeCCCCeEEec
Q 003756 716 TFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLG 778 (797)
Q Consensus 716 ~fVKV~m~G~vGRklDL~~~~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvYeD~EGD~mLVG 778 (797)
.=||++-.|.+ |.+.+..--+|++|.++|.++|++. .....++.|.|.|||+.-+-
T Consensus 7 vkvK~~~~gdi-~~~~v~~~i~~~~L~~kv~~~~~~~------~~~~f~lky~DEeGD~itis 62 (89)
T 1vd2_A 7 VRVKAYYRGDI-MITHFEPSISFEGLCNEVRDMCSFD------NEQLFTMKWIDEEGDPCTVS 62 (89)
T ss_dssp EEEEEESSSCE-EEEEECTTCCHHHHHHHHHHHTTCC------SSCCEEEEECCSSSCCEECC
T ss_pred EEEEEEeCCeE-EEEECCCCCCHHHHHHHHHHHhCCC------CCCeEEEEEECCCCCccccc
Confidence 46888889942 3444445679999999999999974 23468999999999986543
No 6
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=91.20 E-value=0.15 Score=47.81 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=42.4
Q ss_pred CcccEEEEeccc-----ccceecccC-----------CCCCHHHHHHHHHhhhC-CCCccCCCCCCccEEEEEeCCCCeE
Q 003756 713 PTRTFVKVYKSG-----SVGRSLDIS-----------RFSSYNELREELGQMFG-IEGKFEDPLRSGWQLVFVDRENDVL 775 (797)
Q Consensus 713 ~~~~fVKV~m~G-----~vGRklDL~-----------~~~sY~eL~~~L~~MFg-~~g~l~d~~~s~~~lvYeD~EGD~m 775 (797)
...+=||++-.| .==|++-|. .-.+|++|+..+.++|. +. +..+++.|.|.|||++
T Consensus 18 ~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~-------~~~f~l~YkDEdGDlI 90 (117)
T 2ktr_A 18 MGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALR-------PGGFQAHYRAERGDLV 90 (117)
T ss_dssp --CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC-------SSCEEEEEECTTCCEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccC-------CCcEEEEEECCCCCEE
Confidence 456789999975 122444443 13599999999999994 43 2469999999999987
Q ss_pred Eecc
Q 003756 776 LLGD 779 (797)
Q Consensus 776 LVGD 779 (797)
-+..
T Consensus 91 tISs 94 (117)
T 2ktr_A 91 AFSS 94 (117)
T ss_dssp EECS
T ss_pred EecC
Confidence 6543
No 7
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=90.53 E-value=0.41 Score=42.66 Aligned_cols=57 Identities=23% Similarity=0.232 Sum_probs=43.5
Q ss_pred cEEEEecccccce-ecccCCCCCHHHHHHHHHhhhCCCCccCCCCCCccEEEEEeCCCCeEEecc
Q 003756 716 TFVKVYKSGSVGR-SLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGD 779 (797)
Q Consensus 716 ~fVKV~m~G~vGR-klDL~~~~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvYeD~EGD~mLVGD 779 (797)
.=||..-++.+=| ++|-+.-.+|++|...|+++|.+. ...+++.|.|.+||++-+-+
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-------~~~f~i~Y~D~dGDLlpInn 64 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-------GLDVLLGYTDAHGDLLPLTN 64 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-------TCCCEEEEECTTSCEEECCS
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC-------CCCEEEEEECCCCCEeeecC
Confidence 4567666665543 566667789999999999999853 24589999999999986543
No 8
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=90.42 E-value=0.21 Score=45.65 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=41.9
Q ss_pred cccEEEEeccc-----ccceecccCC-----------CCCHHHHHHHHHhhhCCCCccCCCCCCccEEEEEeCCCCeEEe
Q 003756 714 TRTFVKVYKSG-----SVGRSLDISR-----------FSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLL 777 (797)
Q Consensus 714 ~~~fVKV~m~G-----~vGRklDL~~-----------~~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvYeD~EGD~mLV 777 (797)
..+=||+|-.| .-=|.+-|.. ..+|++|+..+.++|..- . +..+++.|.|.|||..-+
T Consensus 4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l---~---~~~f~l~Y~DedGDlIti 77 (102)
T 2kkc_A 4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL---R---PGGFQAHYRAERGDLVAF 77 (102)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS---C---SSCEEEEEECTTCCEEEE
T ss_pred ceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc---C---CCcEEEEEECCCCCEEEe
Confidence 34678888865 1224444432 248999999999999521 1 246999999999998766
Q ss_pred cc
Q 003756 778 GD 779 (797)
Q Consensus 778 GD 779 (797)
.+
T Consensus 78 Ss 79 (102)
T 2kkc_A 78 SS 79 (102)
T ss_dssp CS
T ss_pred cC
Confidence 54
No 9
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=83.45 E-value=1.4 Score=40.09 Aligned_cols=63 Identities=13% Similarity=0.279 Sum_probs=46.1
Q ss_pred cEEEEeccc-----ccc--eecccCCCCCHHHHHHHHHhhhCCCCccCCCCCCccEEEEEeCCCCeEEeccc
Q 003756 716 TFVKVYKSG-----SVG--RSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDD 780 (797)
Q Consensus 716 ~fVKV~m~G-----~vG--RklDL~~~~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvYeD~EGD~mLVGDv 780 (797)
.-|||+-.. +++ |.|=+..--+|++|...+.+-|++. .-++ .....+|-|+|.|||+..++++
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~-~~~~-i~~~~klkYkDEdGD~Vtl~sd 75 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT-HNNN-ISPITKIKYQDEDGDFVVLGSD 75 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH-CSSC-CCCCCCEEEECSSSCEEEECSH
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC-cccc-ccceeEEEEEcCCCCEEEEcCH
Confidence 567777552 244 7777888899999999999999875 1111 1234689999999999877753
No 10
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=74.14 E-value=4 Score=35.48 Aligned_cols=49 Identities=14% Similarity=0.338 Sum_probs=35.8
Q ss_pred cccCCCCCHHHHHHHHHhhhCCCCccCCCCCCccEEEEEeCCCCeEEeccc
Q 003756 730 LDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDD 780 (797)
Q Consensus 730 lDL~~~~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvYeD~EGD~mLVGDv 780 (797)
|=+..--+|++|...+.+-|++. ..+..+..-.|-|+|.|||+...+++
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~--~~~~~~~~~~lkYkDEdGD~Vti~sd 54 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNT--HNNNISPITKIKYQDEDGDFVVLGSD 54 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTT--TSSCSCSTTCCEEEETTTEEEECCST
T ss_pred EEeCCCCCHHHHHHHHHHHHccc--ccccccceeEEEEEcCCCCEEEEcCH
Confidence 33445568999999999999974 22212345689999999999877653
No 11
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=68.22 E-value=0.9 Score=52.55 Aligned_cols=7 Identities=29% Similarity=0.771 Sum_probs=2.1
Q ss_pred CccEEEE
Q 003756 761 SGWQLVF 767 (797)
Q Consensus 761 s~~~lvY 767 (797)
-||.-+|
T Consensus 463 ~gY~~~~ 469 (727)
T 4b8c_D 463 HGYTGIF 469 (727)
T ss_dssp ---CEEC
T ss_pred CCccEEE
Confidence 3555555
No 12
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=66.90 E-value=10 Score=33.94 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=40.8
Q ss_pred EEEEeccc-ccceecccCCCCCHHHHHHHHHhhhCCCCccCCCCCCccEEEEEeCCCCeEEe
Q 003756 717 FVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLL 777 (797)
Q Consensus 717 fVKV~m~G-~vGRklDL~~~~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvYeD~EGD~mLV 777 (797)
=+||+--| ..=--|.-..-.++++|...+..+||++ .+++.|-|.|||-.-|
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~---------~~~ikY~DEenD~v~i 60 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---------TIQIKYLDEENEEVSI 60 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS---------SEEEEEECTTSCEEEE
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC---------ceEEEEEcCCCCEEEE
Confidence 46888888 4333464555678999999999999985 4699999999998654
No 13
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=62.10 E-value=11 Score=34.62 Aligned_cols=53 Identities=11% Similarity=0.191 Sum_probs=42.1
Q ss_pred cEEEEeccc-ccceecccCCCCCHHHHHHHHHhhhCCCCccCCCCCCccEEEEEeCCCCeEEe
Q 003756 716 TFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLL 777 (797)
Q Consensus 716 ~fVKV~m~G-~vGRklDL~~~~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvYeD~EGD~mLV 777 (797)
.=+||+--| ..=--|.-..-.++++|...+..+|+++ .+++.|-|.|||-.-|
T Consensus 15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~---------~~~IkY~DEenD~V~i 68 (101)
T 1wj6_A 15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---------TIQIKYLDEENEEVSI 68 (101)
T ss_dssp EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS---------SBCCEEECTTSCEECC
T ss_pred EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC---------ceEEEEecCCCCEEEE
Confidence 457999889 4333565555679999999999999985 4689999999997644
No 14
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=61.65 E-value=24 Score=34.29 Aligned_cols=102 Identities=21% Similarity=0.225 Sum_probs=62.5
Q ss_pred CcCCCEEEE-EE--ccCCcEEEEEEecCCCCCCCCCcc-ccCCccchhHHHHHHHHHhhCCcEEEEEecCCC------CC
Q 003756 205 LVAGDSVLF-IW--NEKNQLLLGIRRAIRPPTVMPSSV-LSSDSMHIGLLAAAAHAAATNSCFTVFFNPRAS------PS 274 (797)
Q Consensus 205 L~aGDsVvF-~R--~~~G~L~VGIRRa~r~~~~~pssv-~s~~sm~~gvlaaAa~aaa~~~~F~V~Y~PRas------~s 274 (797)
.+.||.|.+ |+ ..+|+.+-.-+.. .|... +....+-.| +.+|......|..++|.--|-.. ..
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vipG-~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~ 75 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSS------SCEEEETTSCSSCSH-HHHHHTTCCTTCEEEEEEETTTSSCCCCTTS
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCC------cCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEECcHHhcCCCChhh
Confidence 568898877 44 3477766543221 12222 222223223 45667777788888887766432 23
Q ss_pred cceechhHHHHhhhcCCCccccEEEEeeeccccccceeeEEEEEecc
Q 003756 275 EFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (797)
Q Consensus 275 EFVVp~~kyvkA~~~~~ws~GMRFKM~fEtEDss~rr~~GTI~gv~d 321 (797)
-+.||+..|-.. ..+.+||+|.+ ++++. . ..|+|+.|.+
T Consensus 76 v~~v~~~~f~~~---~~~~~G~~~~~--~~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 76 VQRVPKDVFMGV---DELQVGMRFLA--ETDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEEGGGGTTS---SCCCTTCEEEE--EETTE--E-EEEEEEEECS
T ss_pred EEEeeHHHCCcc---cCccCCcEEEE--ECCCC--c-EEEEEEEEcC
Confidence 468888887432 36999999985 45553 3 6899999975
No 15
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=60.52 E-value=11 Score=37.64 Aligned_cols=102 Identities=21% Similarity=0.222 Sum_probs=62.1
Q ss_pred CcCCCEEEE-EE--ccCCcEEEEEEecCCCCCCCCCcc-ccCCccchhHHHHHHHHHhhCCcEEEEEecCC------CCC
Q 003756 205 LVAGDSVLF-IW--NEKNQLLLGIRRAIRPPTVMPSSV-LSSDSMHIGLLAAAAHAAATNSCFTVFFNPRA------SPS 274 (797)
Q Consensus 205 L~aGDsVvF-~R--~~~G~L~VGIRRa~r~~~~~pssv-~s~~sm~~gvlaaAa~aaa~~~~F~V~Y~PRa------s~s 274 (797)
.+.||.|.+ |+ ..+|+++-.-+.. .|..+ +....+-.| |.+|......|..++|+--|-. ...
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vipG-~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCTT------SCCEEESSSSSSCHH-HHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCCC------CCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 568899877 43 3577765543211 23222 222233223 4566666777888888766543 334
Q ss_pred cceechhHHHHhhhcCCCccccEEEEeeeccccccceeeEEEEEecc
Q 003756 275 EFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (797)
Q Consensus 275 EFVVp~~kyvkA~~~~~ws~GMRFKM~fEtEDss~rr~~GTI~gv~d 321 (797)
-+.||+..|... ..+.+||+|.+ ++++- .+.++|+.|.+
T Consensus 76 V~~vp~~~f~~~---~~~~~G~~~~~--~~~~G---~~~~~V~~v~~ 114 (196)
T 2kfw_A 76 VQRVPKDVFMGV---DELQVGMRFLA--ETDQG---PVPVEITAVED 114 (196)
T ss_dssp CEEECGGGCCCS---SCCCTTCEEEE--EETTE---EEEEEBCCCCS
T ss_pred EEEEEHHHCCCc---cCcccCCEEEE--ECCCC---cEEEEEEEEcC
Confidence 578888876321 36999999974 55552 57899999875
No 16
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=59.10 E-value=26 Score=33.55 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=61.4
Q ss_pred CcCCCEEEE-EEc-cCCcEEEEEEecCCCCCCCCCccccCCccchhHHHHHHHHHhhCCcEEEEEecCCC------CCcc
Q 003756 205 LVAGDSVLF-IWN-EKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRAS------PSEF 276 (797)
Q Consensus 205 L~aGDsVvF-~R~-~~G~L~VGIRRa~r~~~~~pssv~s~~sm~~gvlaaAa~aaa~~~~F~V~Y~PRas------~sEF 276 (797)
.+.||.|.+ |+. .+|+.+-.-+ . . -.+....+-.| +.+|......|..++|.--|... ..-+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~-~---~-----f~~G~g~vipG-~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE-L---S-----YLHGHRNLIPG-LEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE-E---E-----EETTSSSSCHH-HHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE-E---E-----EEECCCCcChH-HHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 567888876 332 5777665433 0 0 01112222223 45666777788888888765432 2457
Q ss_pred eechhHHHHhhhcCCCccccEEEEeeeccccccceeeEEEEEecc
Q 003756 277 VIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (797)
Q Consensus 277 VVp~~kyvkA~~~~~ws~GMRFKM~fEtEDss~rr~~GTI~gv~d 321 (797)
.||+..|.+. ..|.+||+|.+ ++++. +.+.|+|+.|.+
T Consensus 73 ~v~~~~f~~~---~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED---AEVVPGAQFYA--QDMEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT---SCCCTTCEEEE--EETTT--EEEEEEEEEEET
T ss_pred EEEHHHCCCC---CCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 8888877432 36999999985 44442 567899999975
No 17
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=52.81 E-value=57 Score=30.77 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=64.6
Q ss_pred ccCCcCCCEEEE-EE--cc-CCcEEEEEEecCCCCCCCCCcc-ccCCccchhHHHHHHHHHhhCCcEEEEEecCC-----
Q 003756 202 AKRLVAGDSVLF-IW--NE-KNQLLLGIRRAIRPPTVMPSSV-LSSDSMHIGLLAAAAHAAATNSCFTVFFNPRA----- 271 (797)
Q Consensus 202 ~KkL~aGDsVvF-~R--~~-~G~L~VGIRRa~r~~~~~pssv-~s~~sm~~gvlaaAa~aaa~~~~F~V~Y~PRa----- 271 (797)
.+..+.||.|.+ |+ .. +|+.+-.-+.. .|... +....+-.| +.+|......|..++|.--|-.
T Consensus 4 ~~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~------~p~~f~~G~g~vipg-~e~aL~gm~~Ge~~~v~ipp~~aYG~~ 76 (151)
T 2kr7_A 4 HDLESIKQAALIEYEVREQGSSIVLDSNISK------EPLEFIIGTNQIIAG-LEKAVLKAQIGEWEEVVIAPEEAYGVY 76 (151)
T ss_dssp CCCTTSCCEEEEEEEEEESSCSCEEEESTTT------CCEEEETTCCCSCHH-HHHHHTTCCBTCEEEEEECGGGTTCSS
T ss_pred ccCCCCCCEEEEEEEEEECCCCCEEEeCCCC------cCEEEEECCCCccHH-HHHHHcCCCCCCEEEEEEecHHHcCCC
Confidence 455778999877 44 34 77766543211 12222 222223223 4566666777888888765532
Q ss_pred -CCCcceechhHHHHhhhcCCCccccEEEEeeeccccccceeeEEEEEecc
Q 003756 272 -SPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (797)
Q Consensus 272 -s~sEFVVp~~kyvkA~~~~~ws~GMRFKM~fEtEDss~rr~~GTI~gv~d 321 (797)
...-+.||+..| . ...+.+||+|.+ ++++. ....|+|+.|.+
T Consensus 77 ~~~~v~~v~~~~f-~---~~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 77 ESSYLQEVPRDQF-E---GIELEKGMSVFG--QTEDN--QTIQAIIKDFSA 119 (151)
T ss_dssp CSCEEEEEEGGGG-T---TSCCCTTCEEEE--EETTT--EEEEEEEEEECS
T ss_pred CcceEEEEcHHHc-C---CCCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 234578888887 2 247999999985 44543 457899999975
No 18
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=46.62 E-value=27 Score=32.29 Aligned_cols=40 Identities=28% Similarity=0.280 Sum_probs=33.3
Q ss_pred ccCCCCCHHHHHHHHHhhhCCCCccCCCCCCccEEEEEeCCCCeEEecc
Q 003756 731 DISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGD 779 (797)
Q Consensus 731 DL~~~~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvYeD~EGD~mLVGD 779 (797)
||+.--+|++|..-..+-|..+ +-+|-|.|.|||+.-+=|
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~---------DIaLNYrD~eGDLIrild 67 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE---------DIALNYRDAEGDLVRLLS 67 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS---------SEEEEEECTTSCEEECCS
T ss_pred ccccCCCHHHHHHHHHHHhccc---------ceeeeeecCCCCEEEEcc
Confidence 6677779999999999999843 468999999999986654
No 19
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=46.19 E-value=27 Score=30.80 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=48.7
Q ss_pred cEEEEecccccceecccCCCCCHHHHHHHHHhhhCCCCccCCCCCCccEEEEEe-CCCCeEEecccCccccccC
Q 003756 716 TFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVD-RENDVLLLGDDPWEFRSSR 788 (797)
Q Consensus 716 ~fVKV~m~G~vGRklDL~~~~sY~eL~~~L~~MFg~~g~l~d~~~s~~~lvYeD-~EGD~mLVGDvPWe~F~~~ 788 (797)
.=|||+-. +--.|.+..=-+|.+|++.|.+-+++.+. .=+|-|.| .+|.+++.||.=++.-.++
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~-------~~~LsYk~~~s~~~vi~~d~dl~~aw~~ 70 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLE-------HTKLSYRPRDSNELVPLSEDSMKDAWGQ 70 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGG-------GCCEEECCTTCSSCEECCTTTHHHHHTT
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcc-------eeEEEeeCCCCCCeeccChHHHHHHHHh
Confidence 45777777 77778888888999999999999987532 22688988 5777778888776655444
No 20
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=42.97 E-value=4.5 Score=43.15 Aligned_cols=7 Identities=14% Similarity=0.558 Sum_probs=3.4
Q ss_pred ccccccc
Q 003756 195 GWSVFVS 201 (797)
Q Consensus 195 GWs~FV~ 201 (797)
-|..|+.
T Consensus 128 Twdel~~ 134 (449)
T 3iot_A 128 TWEEIPA 134 (449)
T ss_dssp BGGGHHH
T ss_pred CHHHHHH
Confidence 3555544
No 21
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=42.78 E-value=55 Score=31.90 Aligned_cols=105 Identities=15% Similarity=0.161 Sum_probs=65.5
Q ss_pred CCcCCCEEEE-EE--ccCCcEEEEEEecCCCCCCCCCcc-ccCCccchhHHHHHHHHHhhCCcEEEEEecCCCCCc----
Q 003756 204 RLVAGDSVLF-IW--NEKNQLLLGIRRAIRPPTVMPSSV-LSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSE---- 275 (797)
Q Consensus 204 kL~aGDsVvF-~R--~~~G~L~VGIRRa~r~~~~~pssv-~s~~sm~~gvlaaAa~aaa~~~~F~V~Y~PRas~sE---- 275 (797)
..+.||.|.+ |+ ..+|+++-.-+... .|... +....+-.| +.+|......|..++|..-|...-.+
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~-----~P~~f~lG~g~vipG-~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~ 97 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNNG-----KPALFRLGDASLSEG-LEQHLLGLKVGDKTTFSLEPDAAFGVPSPD 97 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHHT-----SCEEEETTSSSSCHH-HHHHHTTCCTTCEEEEEECGGGTTCCCCGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCCC-----CCEEEEECCCCccHH-HHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 5779999987 44 35788665432211 12222 122222223 46677777888889998766543333
Q ss_pred --ceechhHHHHhhhcCCCccccEEEEeeeccccccceeeEEEEEecc
Q 003756 276 --FVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (797)
Q Consensus 276 --FVVp~~kyvkA~~~~~ws~GMRFKM~fEtEDss~rr~~GTI~gv~d 321 (797)
+.||++.|-.. ..+.+||+|.+ ++++. ..+.|+|+.|.+
T Consensus 98 lv~~vp~~~f~~~---~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 98 LIQYFSRREFMDA---GEPEIGAIMLF--TAMDG--SEMPGVIREING 138 (169)
T ss_dssp GEEEEEGGGGTTT---CCCCTTCEEEE--ECTTS--CEEEEEEEEEET
T ss_pred HEEEeCHHHCCCc---CCCCCCcEEEE--ECCCC--CEEEEEEEEEcC
Confidence 67888876532 35899999876 44542 467899999975
No 22
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=40.32 E-value=39 Score=28.74 Aligned_cols=53 Identities=9% Similarity=0.221 Sum_probs=39.8
Q ss_pred CCCccccEEEEeeeccccccceeeEEEEEeccCCCCCCCCCCccceeeccCCCCCCCCCCCcccccceeCC
Q 003756 290 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT 360 (797)
Q Consensus 290 ~~ws~GMRFKM~fEtEDss~rr~~GTI~gv~d~Dp~rWP~S~WR~LqV~WDe~~~~~~~~RVSPWeIEpv~ 360 (797)
..|.+|+++--.+ + | .++|-++|++|... ....|..+++. .+.|..=+|.|++
T Consensus 5 ~~~~vGd~vmArW-~-D--~~yYpA~I~si~~~----------~~Y~V~F~dG~----~etvk~~~ikp~~ 57 (67)
T 3p8d_A 5 SEFQINEQVLACW-S-D--CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFS 57 (67)
T ss_dssp CCCCTTCEEEEEC-T-T--SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred cccccCCEEEEEc-C-C--CCEeeEEEEEECCC----------CeEEEEEeCCc----eEEEeHHHcccCC
Confidence 5799999999999 3 3 38999999999852 45889999843 3556666665553
No 23
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=34.88 E-value=2e+02 Score=27.45 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=61.0
Q ss_pred CcCCCEEEE-EE--ccCCcEEEEEEec-----CCCC---CCCCCcc-ccCCccchhHHHHHHHHHhhCCcEEEEEecCCC
Q 003756 205 LVAGDSVLF-IW--NEKNQLLLGIRRA-----IRPP---TVMPSSV-LSSDSMHIGLLAAAAHAAATNSCFTVFFNPRAS 272 (797)
Q Consensus 205 L~aGDsVvF-~R--~~~G~L~VGIRRa-----~r~~---~~~pssv-~s~~sm~~gvlaaAa~aaa~~~~F~V~Y~PRas 272 (797)
++.||.|.+ |+ . +|+++-.-+.. .-+. ...|... +....+-.| +.+|......|..++|+--|-..
T Consensus 2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G-~eeaL~gm~~Ge~~~v~Ipp~~a 79 (157)
T 3pr9_A 2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPG-LDEAILEMDVGEEREVVLPPEKA 79 (157)
T ss_dssp CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHH-HHHHHHHCCTTCEEEEEECGGGT
T ss_pred CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHH-HHHHHcCCCCCCEEEEEECcHHh
Confidence 357888877 33 3 67766543321 0000 0123322 222223233 56788888899999998655433
Q ss_pred C------CcceechhHHHHhhhcCCCccccEEEEeeeccccccceeeEEEEEecc
Q 003756 273 P------SEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (797)
Q Consensus 273 ~------sEFVVp~~kyvkA~~~~~ws~GMRFKM~fEtEDss~rr~~GTI~gv~d 321 (797)
- .=..||++.|.+. .....+||+|.+ +++ .|+|+.|.+
T Consensus 80 YG~~~~~~V~~v~~~~f~~~--~~~~~~G~~~~~--~~~-------~~~V~~v~~ 123 (157)
T 3pr9_A 80 FGKRDPSKIKLIPLSEFTKR--GIKPIKGLTITI--DGI-------PGKIVSINS 123 (157)
T ss_dssp TCCCCGGGEEEEEHHHHHHT--TCCCCTTCEEEE--TTE-------EEEEEEEET
T ss_pred cCCCChHhEEEcCHHHCCcc--cCCcCCCcEEEe--cCC-------CeEEEEEcC
Confidence 2 2367898887653 245889999975 332 589999975
No 24
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=34.34 E-value=9.1 Score=40.81 Aligned_cols=6 Identities=17% Similarity=0.528 Sum_probs=2.7
Q ss_pred CEEEEe
Q 003756 40 TRVVYF 45 (797)
Q Consensus 40 s~V~YF 45 (797)
+.++|.
T Consensus 6 tltvw~ 11 (449)
T 3iot_A 6 KLVIWI 11 (449)
T ss_dssp SEEEEC
T ss_pred eEEEEe
Confidence 444443
No 25
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=33.89 E-value=51 Score=29.34 Aligned_cols=54 Identities=9% Similarity=0.218 Sum_probs=39.8
Q ss_pred CCCccccEEEEeeeccccccceeeEEEEEeccCCCCCCCCCCccceeeccCCCCCCCCCCCcccccceeCCC
Q 003756 290 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTT 361 (797)
Q Consensus 290 ~~ws~GMRFKM~fEtEDss~rr~~GTI~gv~d~Dp~rWP~S~WR~LqV~WDe~~~~~~~~RVSPWeIEpv~~ 361 (797)
..|.+|+++--.+ ++ .++|-++|++|... ....|.++++. .+.|.+=+|.|++.
T Consensus 20 ~~f~vGd~VlArW-~D---~~yYPAkI~sV~~~----------~~YtV~F~DG~----~etvk~~~IKp~~~ 73 (85)
T 3qii_A 20 SEFQINEQVLACW-SD---CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFSK 73 (85)
T ss_dssp -CCCTTCEEEEEC-TT---SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC-
T ss_pred cccccCCEEEEEe-CC---CCEeeEEEEEECCC----------CeEEEEEeCCC----eEEecHHHcccCCh
Confidence 4799999999999 33 38999999999852 35899999843 25566666666543
No 26
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=31.93 E-value=9.6 Score=44.08 Aligned_cols=6 Identities=67% Similarity=1.110 Sum_probs=0.0
Q ss_pred eEEecc
Q 003756 774 VLLLGD 779 (797)
Q Consensus 774 ~mLVGD 779 (797)
++|+||
T Consensus 598 vIl~GD 603 (727)
T 4b8c_D 598 VLICGD 603 (727)
T ss_dssp ------
T ss_pred eEEecc
Confidence 444444
No 27
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=29.76 E-value=46 Score=26.13 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=22.0
Q ss_pred CCccccEEEEeeeccccccceeeEEEEEecc
Q 003756 291 RVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (797)
Q Consensus 291 ~ws~GMRFKM~fEtEDss~rr~~GTI~gv~d 321 (797)
.|.+|+.+--.|..+. .||.++|.++..
T Consensus 1 ~wk~G~~c~A~~s~Dg---~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN---KFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTTT---EEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCCC---CEEEEEEEEEeC
Confidence 4899999999994343 899999999863
No 28
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=29.42 E-value=51 Score=30.39 Aligned_cols=73 Identities=30% Similarity=0.319 Sum_probs=43.7
Q ss_pred CcceechhHHHHhhhcCCCccccEEEEeeeccccccceeeEEEEEeccCCCCCCCCCCccceeeccCCCCCCCCCCCccc
Q 003756 274 SEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSL 353 (797)
Q Consensus 274 sEFVVp~~kyvkA~~~~~ws~GMRFKM~fEtEDss~rr~~GTI~gv~d~Dp~rWP~S~WR~LqV~WDe~~~~~~~~RVSP 353 (797)
++|-=. +.|..-+. .++.||||+||.=.-|+-+. -=.|++. ++. + . -+ .+||.|..... .-.|+-
T Consensus 6 sdF~s~-~~Ya~YVr-~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s~-~--G---l~--~vQv~W~~~G~---TyWV~~ 70 (105)
T 2jng_A 6 SEFASG-NTYALYVR-DTLQPGMRVRMLDDYEEISA-GDEGEFR-QSN-N--G---VP--PVQVFWESTGR---TYWVHW 70 (105)
T ss_dssp GGSSSS-HHHHHHHH-HHCCTTCEEEECSCBTTBCT-TCEEEEE-EEC-T--T---SS--EEEEEETTTTE---EEEEEG
T ss_pred hhcccc-hhHHHHHH-hcCCCccEEeeehhhhhhcc-CCceeEE-ecC-C--C---Cc--cceeeehhcCc---eEEEEe
Confidence 455332 44555554 46999999999732232211 2368887 432 2 2 22 89999996652 355666
Q ss_pred ccceeCCC
Q 003756 354 WEIEPLTT 361 (797)
Q Consensus 354 WeIEpv~~ 361 (797)
=.||++..
T Consensus 71 ~~~Ellg~ 78 (105)
T 2jng_A 71 HMLEILGF 78 (105)
T ss_dssp GGEEECCC
T ss_pred ehhhhcCC
Confidence 67787754
No 29
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=29.40 E-value=53 Score=26.35 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=23.4
Q ss_pred CCccccEEEEeeeccccccceeeEEEEEecc
Q 003756 291 RVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (797)
Q Consensus 291 ~ws~GMRFKM~fEtEDss~rr~~GTI~gv~d 321 (797)
.|.+|+.+-..|. +| ..||.++|+++..
T Consensus 3 ~~~~G~~c~A~~s-~D--g~wYrA~I~~i~~ 30 (59)
T 1mhn_A 3 QWKVGDKCSAIWS-ED--GCIYPATIASIDF 30 (59)
T ss_dssp CCCTTCEEEEECT-TT--SCEEEEEEEEEET
T ss_pred cCCcCCEEEEEEC-CC--CCEEEEEEEEEcC
Confidence 6999999999994 33 2899999999964
No 30
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=29.29 E-value=50 Score=27.04 Aligned_cols=42 Identities=12% Similarity=0.223 Sum_probs=30.5
Q ss_pred CCCccccEEEEeeeccccccceeeEEEEEeccCCCCCCCCCCccceeeccCCCC
Q 003756 290 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDEST 343 (797)
Q Consensus 290 ~~ws~GMRFKM~fEtEDss~rr~~GTI~gv~d~Dp~rWP~S~WR~LqV~WDe~~ 343 (797)
..|.+|+.+.-.|..+. .||.++|.+|.... ....|...+=+
T Consensus 7 ~~~~vGd~c~A~~s~Dg---~wYrA~I~~v~~~~---------~~~~V~fvdYG 48 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDG---QCYEAEIEEIDEEN---------GTAAITFAGYG 48 (64)
T ss_dssp SCCCTTCEEEEECTTTS---SEEEEEEEEEETTT---------TEEEEEETTTT
T ss_pred CCCCCCCEEEEEECCCC---CEEEEEEEEEcCCC---------CEEEEEEEecC
Confidence 47999999999994333 89999999997421 24567666543
No 31
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.97 E-value=54 Score=28.13 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=31.2
Q ss_pred CCCccccEEEEeeeccccccceeeEEEEEeccCCCCCCCCCCccceeeccCCC
Q 003756 290 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDES 342 (797)
Q Consensus 290 ~~ws~GMRFKM~fEtEDss~rr~~GTI~gv~d~Dp~rWP~S~WR~LqV~WDe~ 342 (797)
..|.+|+++.-.|. | ..||-++|++|.+ + ....|..++-
T Consensus 8 ~~~kvGd~clA~ws--D--g~~Y~A~I~~v~~-------~---~~~~V~f~Dy 46 (74)
T 2equ_A 8 FDFKAGEEVLARWT--D--CRYYPAKIEAINK-------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCTTCEEEEECS--S--SSEEEEEEEEEST-------T---SSEEEEETTS
T ss_pred CCCCCCCEEEEECC--C--CCEEEEEEEEECC-------C---CEEEEEEecC
Confidence 57999999999996 3 3899999999963 1 3568888765
No 32
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.55 E-value=38 Score=33.08 Aligned_cols=26 Identities=23% Similarity=0.155 Sum_probs=22.2
Q ss_pred ccCCcCCCEEEEEEccCCcEEEEEEe
Q 003756 202 AKRLVAGDSVLFIWNEKNQLLLGIRR 227 (797)
Q Consensus 202 ~KkL~aGDsVvF~R~~~G~L~VGIRR 227 (797)
-..|.+||.|-|+++.+|+|++.|--
T Consensus 115 l~~l~~Gd~ig~~~~~~G~l~~~iNg 140 (170)
T 2e63_A 115 LDQLGEGDRVGVERTVAGELRLWVNG 140 (170)
T ss_dssp GGGCCSSCCEEEEECTTSCEEEEESS
T ss_pred ccccCCCCEEEEEEcCCcEEEEEECC
Confidence 44678999999999999999998743
No 33
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=24.81 E-value=48 Score=28.46 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=31.5
Q ss_pred cceeecccccccccccCCcCCCEEEEEEc-cCCcEEEEEEecC
Q 003756 188 KRHLLTTGWSVFVSAKRLVAGDSVLFIWN-EKNQLLLGIRRAI 229 (797)
Q Consensus 188 rrhlLTtGWs~FV~~KkL~aGDsVvF~R~-~~G~L~VGIRRa~ 229 (797)
..|.|+== .+++++-+|..||.+...=+ .+|++.++.+|-+
T Consensus 23 etyYInIP-aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVK 64 (68)
T 3o27_A 23 TTFYLLIP-KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVK 64 (68)
T ss_dssp CCEEEEEC-HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECG
T ss_pred eEEEEeCc-HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhh
Confidence 33444321 48999999999999998765 5888999999954
No 34
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=24.65 E-value=65 Score=28.22 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=18.2
Q ss_pred ccCCcCCCEEEEEEc-cCCcEEE-EEEe
Q 003756 202 AKRLVAGDSVLFIWN-EKNQLLL-GIRR 227 (797)
Q Consensus 202 ~KkL~aGDsVvF~R~-~~G~L~V-GIRR 227 (797)
-++|++||.|.|.-. .+|.+.| .|++
T Consensus 59 l~~lk~Gd~V~F~~~~~~~~~~it~i~~ 86 (88)
T 2vb2_X 59 MSEIKTGDKVAFNFVQQGNLSLLQDIKV 86 (88)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEEEEEe
Confidence 467999999999654 4556654 5654
No 35
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=23.70 E-value=75 Score=27.33 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=18.1
Q ss_pred ccCCcCCCEEEEEEc-cCCcEEE-EEEe
Q 003756 202 AKRLVAGDSVLFIWN-EKNQLLL-GIRR 227 (797)
Q Consensus 202 ~KkL~aGDsVvF~R~-~~G~L~V-GIRR 227 (797)
-++|++||.|.|.-. .+|.+.| .|++
T Consensus 51 l~~lk~Gd~V~F~~~~~~~~~~it~i~~ 78 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQQGNLSLLQDIKV 78 (80)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEEEEEe
Confidence 467999999999654 4555654 5654
No 36
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=22.99 E-value=38 Score=30.00 Aligned_cols=19 Identities=42% Similarity=0.695 Sum_probs=15.7
Q ss_pred cccccCCcCCCEEEEEEcc
Q 003756 199 FVSAKRLVAGDSVLFIWNE 217 (797)
Q Consensus 199 FV~~KkL~aGDsVvF~R~~ 217 (797)
....|+..+||+|+|--..
T Consensus 18 Wa~~~~f~vGD~L~F~y~~ 36 (96)
T 2cbp_A 18 WPKGKRFRAGDILLFNYNP 36 (96)
T ss_dssp TTTTCCBCTTCEEEEECCT
T ss_pred hccCceEcCCCEEEEEecC
Confidence 3588999999999997654
No 37
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=22.60 E-value=1.4e+02 Score=26.54 Aligned_cols=46 Identities=17% Similarity=0.037 Sum_probs=34.4
Q ss_pred ceEEEEEecCCCeEEEEEEEeCCCcceeecccccccccccCCcCCCEEEEEEc----cCCcEEEEEEecC
Q 003756 164 AQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWN----EKNQLLLGIRRAI 229 (797)
Q Consensus 164 ~q~L~v~D~~G~~W~FR~iyrg~prrhlLTtGWs~FV~~KkL~aGDsVvF~R~----~~G~L~VGIRRa~ 229 (797)
-..+.+.|..| +.+++.|+.. |.+||.|.+... =+|.+.|-+-|..
T Consensus 39 v~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~ 88 (106)
T 2k75_A 39 VYQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSS 88 (106)
T ss_dssp EEEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEEEEEEEETTEEEEEECTTS
T ss_pred EEEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEeeEEeEECCEEEEEECCcE
Confidence 35799999999 5788888643 889999998743 2787877776654
No 38
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=22.26 E-value=77 Score=27.95 Aligned_cols=29 Identities=24% Similarity=0.293 Sum_probs=24.2
Q ss_pred CCCccccEEEEeeeccccccceeeEEEEEecc
Q 003756 290 TRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (797)
Q Consensus 290 ~~ws~GMRFKM~fEtEDss~rr~~GTI~gv~d 321 (797)
..|.+|+.+.-.|. +| ..||.++|.+|..
T Consensus 9 ~~~kvGd~C~A~ys-~D--g~wYrA~I~~i~~ 37 (88)
T 1g5v_A 9 QQWKVGDKCSAIWS-ED--GCIYPATIASIDF 37 (88)
T ss_dssp CCCCSSCEEEEECT-TT--CCEEEEEEEEEET
T ss_pred CCCCCCCEEEEEEC-CC--CCEEEEEEEEecC
Confidence 47999999999994 44 2899999999964
No 39
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=21.14 E-value=73 Score=31.03 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=19.5
Q ss_pred cCCCEEEEEEccCCcEEEEEEe
Q 003756 206 VAGDSVLFIWNEKNQLLLGIRR 227 (797)
Q Consensus 206 ~aGDsVvF~R~~~G~L~VGIRR 227 (797)
..||.+.|+++.+|+|++.|--
T Consensus 107 ~~g~~l~f~v~~~G~l~~~iNg 128 (168)
T 2yue_A 107 EKDNILYYYVNGAGDVIYGINN 128 (168)
T ss_dssp CSSCEEEEEECTTSEEEEEESS
T ss_pred cCCCEEEEEEcCCCEEEEEECC
Confidence 6799999999999999998843
No 40
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=20.46 E-value=31 Score=27.59 Aligned_cols=14 Identities=7% Similarity=0.128 Sum_probs=11.7
Q ss_pred EEEEEeCCCCeEEe
Q 003756 764 QLVFVDRENDVLLL 777 (797)
Q Consensus 764 ~lvYeD~EGD~mLV 777 (797)
.++|+|.+|||-.-
T Consensus 20 ~V~YtD~dG~WGVe 33 (46)
T 1e8p_A 20 KVEYTDASGQWGVQ 33 (46)
T ss_dssp CEEEEETTEEEEEE
T ss_pred eEEEEcCCCccccC
Confidence 49999999999543
Done!