BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003758
(797 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8TTI1|Y452_METAC Uncharacterized glycosyltransferase MA_0452 OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=MA_0452 PE=3 SV=1
Length = 379
Score = 36.6 bits (83), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 40/191 (20%)
Query: 37 YWKSVFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKS--HEKYQLRK 94
++K VF + + I+ PDY LP Y+V N P ++ YS EKY+
Sbjct: 149 FYKEVFEKTDKIIIPDYPLP--YTVCRK-NLNFAPKLRGKLF----YSGPLVREKYEDID 201
Query: 95 ENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNS 154
K +V ++ G F Y E P+ K ++ + + G S
Sbjct: 202 SIPLEKPHVVSLIGG--FGYRE-------------PIFRKVLTTAMLDPGINYTLISGPS 246
Query: 155 TDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAM 214
D S+LG + +VR F D + +D V + G S I+ A+
Sbjct: 247 LD---------PSKLGGVPKNVRILNFVEDTYPYIKSSDAV------IAPGGHSTIMEAL 291
Query: 215 TFGIPVIT-PD 224
+FG+P+++ PD
Sbjct: 292 SFGVPILSFPD 302
>sp|O05083|Y1698_HAEIN Uncharacterized glycosyltransferase HI_1698 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=HI_1698 PE=3 SV=1
Length = 353
Score = 36.2 bits (82), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 200 SQVEQGFPSLIVRAMTFGIPVITPDF-PIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 258
SQ E G P +++ AM FG+P++ + P +K+ V +++N E + + L I+
Sbjct: 263 SQTE-GLPLVVIEAMAFGLPIVAFNCSPGVKQLVEHKENGFLCEQNNIEEMVKGLDLLIN 321
Query: 259 NGKL 262
N +L
Sbjct: 322 NPEL 325
>sp|Q33568|CYB_TRYBO Cytochrome b OS=Trypanoplasma borreli GN=MT-CYB PE=2 SV=2
Length = 372
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 6 HSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDY 53
H L + + D L +R P Y ER F LL Y + +F +N++ F Y
Sbjct: 198 HFFVLHYFLSSDGLLDRFPFYYERFFFFLLYYLRDLFLIINILCFLIY 245
>sp|P25740|RFAG_ECOLI Lipopolysaccharide core biosynthesis protein RfaG OS=Escherichia
coli (strain K12) GN=rfaG PE=1 SV=1
Length = 374
Score = 34.7 bits (78), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 24/222 (10%)
Query: 71 PGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGP 130
PG D E S E Y R++NG + + +++ VGS F D ++ +
Sbjct: 167 PGIYPDRKYSEQIPNSREIY--RQKNGIKEQQNLLLQVGSDF--GRKGVDRSI---EALA 219
Query: 131 LLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL 190
L + R N++ +F+ G +AL E +LG+ +V + DV+ ++
Sbjct: 220 SLPESLRHNTL------LFVVGQDKPRKFEALAE---KLGV-RSNVHFFSGRNDVSELMA 269
Query: 191 MADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEG--AQVI---FFQKDN 245
AD++L+ + Q G +++ A+T G+PV+T Y+A+ VI F Q+
Sbjct: 270 AADLLLHPAYQEAAGI--VLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQL 327
Query: 246 PEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVT 287
E L +A + ++ AR A L++ A D +T
Sbjct: 328 NEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIIT 369
>sp|P21458|SP3E_BACSU DNA translocase SpoIIIE OS=Bacillus subtilis (strain 168)
GN=spoIIIE PE=1 SV=3
Length = 787
Score = 34.3 bits (77), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Query: 341 TSTSSRN----SSVVDLLEEEFTKNITENENRSADQDTISELDWDVLHDIESSEEYERLE 396
+S S RN S V++ E +K + + + + DQ+T+S ++E+ ++YE
Sbjct: 261 SSFSDRNEEEESPVIEKRAEPVSKPLQDIQPETGDQETVSAPPM-TFTELEN-KDYEMPS 318
Query: 397 MEQLEE-RMDGTFASWDDIYRNARKSERFKFEANERDEGELERTGQPVCIYEIYSGSGAW 455
++ L + + G A +IY NARK ER + + G V YE+Y G
Sbjct: 319 LDLLADPKHTGQQADKKNIYENARKLERTFQSFGVKAKVTQVHLGPAVTKYEVYPDVGVK 378
Query: 456 PFLHHGSLYRGLALSSAARRLR 477
+L LAL+ AA+ +R
Sbjct: 379 -VSKIVNLSDDLALALAAKDIR 399
>sp|P71053|EPSD_BACSU Putative glycosyltransferase EpsD OS=Bacillus subtilis (strain 168)
GN=epsD PE=2 SV=1
Length = 381
Score = 34.3 bits (77), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 79/190 (41%), Gaps = 26/190 (13%)
Query: 88 EKYQLRKENGFLKDEIVVVVVGS-SFFYNELSWDYAVAM--HDVGPLLIKYARRNSVEGS 144
E+ +LR+++GF +D+ ++V + N+ A A+ + L + +A ++E +
Sbjct: 183 EQQRLREKHGFREDDFILVYPAELNLNKNQKQLIEAAALLKEKIPSLRLVFAGEGAMEHT 242
Query: 145 FKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQ 204
+ Q +A +LG H V YGF D++ ++ +AD+ + +S + +
Sbjct: 243 Y-----------------QTLAEKLGASAH-VCFYGFCSDIHELIQLADVSV--ASSIRE 282
Query: 205 GFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSK 264
G ++ M P I D +E + +G + + +R +L
Sbjct: 283 GLGMNVLEGMAAEQPAIATDNRGHREIIRDGENGFLIKIGDSAAFARRIEQLYHKPEL-- 340
Query: 265 FARTVASAGR 274
R + GR
Sbjct: 341 -CRKLGQEGR 349
>sp|Q92448|K6PF1_PICPA 6-phosphofructokinase OS=Komagataella pastoris GN=PFK1 PE=3 SV=1
Length = 990
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 21/118 (17%)
Query: 151 CGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLI 210
C N+ GY DA+++ AS + R F +V G G S + LI
Sbjct: 745 CLNTLSGYCDAVKQSAS-------ASRRRTFVVEVQG----------GYSGYLASYAGLI 787
Query: 211 VRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFART 268
A+ V TP+ PI + V E +++ + +G +R+ +FI N K SK T
Sbjct: 788 TGALA----VYTPENPINLQTVQEDIELLTRTYEEDDGKNRSGKIFIHNEKASKVYTT 841
>sp|A2SRE2|SYM_METLZ Methionine--tRNA ligase OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=metG PE=3 SV=1
Length = 673
Score = 33.9 bits (76), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 164 EVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVR 212
E+ L +E SVR Y F V+G+LL+A YG+S + P +++
Sbjct: 413 EIERSLAAIEESVRAYEFKAAVDGILLLA---AYGNSYISNAAPWKLIK 458
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 308,943,768
Number of Sequences: 539616
Number of extensions: 13644619
Number of successful extensions: 37573
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 37559
Number of HSP's gapped (non-prelim): 29
length of query: 797
length of database: 191,569,459
effective HSP length: 126
effective length of query: 671
effective length of database: 123,577,843
effective search space: 82920732653
effective search space used: 82920732653
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)