Query 003758
Match_columns 797
No_of_seqs 200 out of 2496
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 11:32:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003758.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003758hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03449 mycothiol_MshA UDP-N 100.0 4.5E-27 9.8E-32 258.6 29.0 272 6-298 123-404 (405)
2 PRK15427 colanic acid biosynth 100.0 2.6E-27 5.5E-32 264.6 26.3 251 7-295 143-405 (406)
3 TIGR03088 stp2 sugar transfera 100.0 9.7E-27 2.1E-31 253.0 28.7 236 42-297 134-374 (374)
4 cd04962 GT1_like_5 This family 100.0 1.1E-26 2.3E-31 250.1 27.9 258 7-296 111-371 (371)
5 cd03813 GT1_like_3 This family 100.0 7.9E-27 1.7E-31 265.3 27.0 259 6-294 196-475 (475)
6 TIGR02472 sucr_P_syn_N sucrose 100.0 2E-26 4.4E-31 259.2 27.0 234 39-293 179-438 (439)
7 TIGR02149 glgA_Coryne glycogen 99.9 7.1E-26 1.5E-30 246.3 28.3 268 5-297 104-388 (388)
8 PRK10307 putative glycosyl tra 99.9 1.4E-25 3.1E-30 248.5 29.3 267 6-298 130-410 (412)
9 PLN02871 UDP-sulfoquinovose:DA 99.9 8.8E-26 1.9E-30 255.6 28.1 260 6-298 167-437 (465)
10 PRK15484 lipopolysaccharide 1, 99.9 2.5E-25 5.4E-30 246.0 28.5 231 41-297 136-379 (380)
11 TIGR02468 sucrsPsyn_pln sucros 99.9 1.5E-25 3.2E-30 270.4 28.5 243 35-299 372-674 (1050)
12 cd03807 GT1_WbnK_like This fam 99.9 6.1E-25 1.3E-29 229.6 27.4 257 6-294 103-365 (365)
13 cd05844 GT1_like_7 Glycosyltra 99.9 2.6E-25 5.7E-30 238.9 25.2 252 6-291 104-366 (367)
14 PRK00654 glgA glycogen synthas 99.9 2E-25 4.3E-30 253.4 24.6 266 5-298 144-465 (466)
15 cd03796 GT1_PIG-A_like This fa 99.9 6E-25 1.3E-29 243.1 27.5 252 6-298 112-370 (398)
16 cd03819 GT1_WavL_like This fam 99.9 7.1E-25 1.5E-29 233.7 26.4 244 6-285 100-354 (355)
17 cd03821 GT1_Bme6_like This fam 99.9 1.8E-24 3.9E-29 227.0 27.4 260 6-290 111-374 (375)
18 PRK14099 glycogen synthase; Pr 99.9 6E-25 1.3E-29 251.4 25.5 234 38-298 203-481 (485)
19 cd03792 GT1_Trehalose_phosphor 99.9 1.7E-24 3.8E-29 236.5 27.9 256 7-296 107-372 (372)
20 PLN02939 transferase, transfer 99.9 8.9E-25 1.9E-29 260.5 26.8 270 4-299 636-970 (977)
21 cd03800 GT1_Sucrose_synthase T 99.9 2.5E-24 5.4E-29 233.1 27.3 263 6-290 123-397 (398)
22 cd03818 GT1_ExpC_like This fam 99.9 1.2E-24 2.6E-29 240.3 25.2 230 39-290 151-395 (396)
23 PRK15179 Vi polysaccharide bio 99.9 1.9E-24 4E-29 255.5 28.1 211 60-294 477-692 (694)
24 TIGR02918 accessory Sec system 99.9 2.2E-24 4.8E-29 247.5 27.6 254 6-296 232-500 (500)
25 cd03814 GT1_like_2 This family 99.9 4E-24 8.6E-29 225.5 27.2 255 6-293 106-363 (364)
26 PRK14098 glycogen synthase; Pr 99.9 1.4E-24 3.1E-29 248.5 24.6 267 4-298 168-488 (489)
27 TIGR02095 glgA glycogen/starch 99.9 1.9E-24 4.1E-29 245.1 25.3 231 38-296 199-473 (473)
28 PLN02316 synthase/transferase 99.9 6.1E-24 1.3E-28 257.0 28.5 257 4-298 735-1036(1036)
29 cd03817 GT1_UGDG_like This fam 99.9 2.6E-23 5.7E-28 218.6 28.7 260 6-295 107-373 (374)
30 cd03822 GT1_ecORF704_like This 99.9 1.2E-23 2.7E-28 222.4 26.3 255 6-294 104-366 (366)
31 cd03805 GT1_ALG2_like This fam 99.9 1.2E-23 2.6E-28 229.2 26.6 225 41-286 151-388 (392)
32 PRK15490 Vi polysaccharide bio 99.9 3.8E-24 8.1E-29 244.9 22.9 213 60-296 357-576 (578)
33 cd03820 GT1_amsD_like This fam 99.9 2.5E-23 5.4E-28 215.6 26.6 241 8-290 106-347 (348)
34 cd03801 GT1_YqgM_like This fam 99.9 3.4E-23 7.3E-28 214.6 27.3 262 5-293 106-373 (374)
35 cd03795 GT1_like_4 This family 99.9 2.7E-23 5.9E-28 220.9 26.9 246 6-286 105-356 (357)
36 cd04951 GT1_WbdM_like This fam 99.9 2.9E-23 6.2E-28 221.0 26.9 208 61-294 150-359 (360)
37 cd03812 GT1_CapH_like This fam 99.9 2.1E-23 4.6E-28 222.6 26.0 215 41-280 134-349 (358)
38 TIGR02470 sucr_synth sucrose s 99.9 2E-23 4.3E-28 247.6 27.7 266 6-293 407-745 (784)
39 cd03798 GT1_wlbH_like This fam 99.9 6E-23 1.3E-27 214.0 28.0 257 6-296 116-377 (377)
40 cd03791 GT1_Glycogen_synthase_ 99.9 8.7E-24 1.9E-28 238.6 22.9 265 5-294 156-475 (476)
41 cd03811 GT1_WabH_like This fam 99.9 3.3E-23 7.2E-28 214.5 25.2 243 7-282 104-352 (353)
42 cd04949 GT1_gtfA_like This fam 99.9 1.7E-23 3.6E-28 227.2 22.8 248 8-289 122-372 (372)
43 cd03809 GT1_mtfB_like This fam 99.9 2.3E-23 5.1E-28 220.2 23.2 259 5-290 101-364 (365)
44 cd03799 GT1_amsK_like This is 99.9 6.6E-23 1.4E-27 217.8 26.0 238 7-286 103-351 (355)
45 PRK10125 putative glycosyl tra 99.9 2.5E-23 5.5E-28 232.9 23.8 210 41-296 187-405 (405)
46 cd03825 GT1_wcfI_like This fam 99.9 1.3E-22 2.9E-27 216.3 27.0 225 43-296 134-365 (365)
47 cd04955 GT1_like_6 This family 99.9 9.9E-23 2.1E-27 217.5 25.9 249 7-294 108-363 (363)
48 PLN00142 sucrose synthase 99.9 4.5E-23 9.7E-28 244.8 25.2 231 41-293 472-768 (815)
49 cd03808 GT1_cap1E_like This fa 99.9 2E-22 4.3E-27 209.7 26.3 249 6-290 103-358 (359)
50 cd03794 GT1_wbuB_like This fam 99.9 1.7E-22 3.7E-27 212.5 25.8 259 6-289 123-393 (394)
51 cd04946 GT1_AmsK_like This fam 99.9 1.3E-22 2.8E-27 226.6 26.2 243 9-289 154-405 (407)
52 PRK09922 UDP-D-galactose:(gluc 99.9 9.8E-23 2.1E-27 222.5 23.2 220 42-297 131-357 (359)
53 PHA01630 putative group 1 glyc 99.9 4.5E-22 9.8E-27 217.5 26.5 239 6-295 68-330 (331)
54 PLN02949 transferase, transfer 99.9 3.8E-22 8.2E-27 227.2 25.9 230 41-298 217-459 (463)
55 cd03823 GT1_ExpE7_like This fa 99.9 9.4E-22 2E-26 206.6 24.7 235 6-294 119-358 (359)
56 TIGR03087 stp1 sugar transfera 99.9 1.1E-21 2.4E-26 217.0 25.5 225 39-294 167-395 (397)
57 cd03816 GT1_ALG1_like This fam 99.9 2.3E-21 5E-26 217.0 27.4 257 6-281 120-403 (415)
58 cd03806 GT1_ALG11_like This fa 99.9 1.8E-21 3.9E-26 218.6 25.1 220 39-285 184-415 (419)
59 cd03802 GT1_AviGT4_like This f 99.9 4.6E-21 1E-25 202.8 23.8 226 5-294 105-335 (335)
60 cd03804 GT1_wbaZ_like This fam 99.9 3.8E-21 8.2E-26 207.5 22.9 195 39-280 148-345 (351)
61 PF00534 Glycos_transf_1: Glyc 99.9 5.1E-21 1.1E-25 186.1 19.3 169 89-276 2-172 (172)
62 PLN02501 digalactosyldiacylgly 99.9 1.8E-20 3.9E-25 217.2 24.8 242 9-292 461-706 (794)
63 PLN02846 digalactosyldiacylgly 99.9 7.1E-20 1.5E-24 207.8 25.9 247 8-298 142-394 (462)
64 PHA01633 putative glycosyl tra 99.9 6.7E-20 1.5E-24 200.7 24.3 223 37-290 85-334 (335)
65 PLN02275 transferase, transfer 99.8 1.5E-19 3.2E-24 199.3 23.8 228 6-257 125-371 (371)
66 PRK05749 3-deoxy-D-manno-octul 99.8 1.8E-18 4E-23 193.3 24.5 232 38-297 172-421 (425)
67 cd03793 GT1_Glycogen_synthase_ 99.8 5.4E-18 1.2E-22 194.8 28.0 277 6-298 171-589 (590)
68 cd03788 GT1_TPS Trehalose-6-Ph 99.8 7.3E-19 1.6E-23 200.1 20.3 209 65-292 227-458 (460)
69 TIGR02400 trehalose_OtsA alpha 99.8 1E-17 2.2E-22 190.8 25.2 233 38-293 177-454 (456)
70 PLN02605 monogalactosyldiacylg 99.8 5E-17 1.1E-21 180.0 23.4 223 42-292 148-378 (382)
71 KOG1111 N-acetylglucosaminyltr 99.8 1.1E-17 2.3E-22 180.2 15.8 223 41-299 142-370 (426)
72 cd04950 GT1_like_1 Glycosyltra 99.7 1.4E-16 3.1E-21 175.7 21.3 246 5-295 120-371 (373)
73 PRK13609 diacylglycerol glucos 99.7 5.6E-16 1.2E-20 170.5 22.1 221 41-296 144-372 (380)
74 cd03785 GT1_MurG MurG is an N- 99.7 6.2E-16 1.3E-20 166.7 19.8 205 42-285 132-347 (350)
75 PRK13608 diacylglycerol glucos 99.7 1.2E-15 2.5E-20 170.0 22.3 222 42-298 145-374 (391)
76 PRK00726 murG undecaprenyldiph 99.7 1.7E-15 3.7E-20 165.0 22.1 213 42-294 134-356 (357)
77 PLN03063 alpha,alpha-trehalose 99.7 1.4E-16 3E-21 192.0 13.6 214 65-298 242-480 (797)
78 COG0438 RfaG Glycosyltransfera 99.7 6.1E-14 1.3E-18 142.6 27.9 223 45-298 151-379 (381)
79 TIGR01133 murG undecaprenyldip 99.7 2.3E-15 5E-20 162.2 17.7 204 41-286 132-345 (348)
80 KOG0853 Glycosyltransferase [C 99.6 5.3E-15 1.1E-19 167.4 17.5 236 41-294 206-466 (495)
81 PRK14501 putative bifunctional 99.6 5.9E-15 1.3E-19 176.9 16.3 209 66-298 229-465 (726)
82 COG0297 GlgA Glycogen synthase 99.5 5.1E-13 1.1E-17 152.8 22.5 194 87-300 277-482 (487)
83 PRK00025 lpxB lipid-A-disaccha 99.5 8.3E-13 1.8E-17 144.9 21.3 223 41-297 131-375 (380)
84 PRK09814 beta-1,6-galactofuran 99.5 1.8E-12 3.8E-17 141.5 20.1 217 7-285 92-321 (333)
85 TIGR02398 gluc_glyc_Psyn gluco 99.5 2.5E-12 5.4E-17 147.5 21.1 203 67-292 250-479 (487)
86 TIGR00236 wecB UDP-N-acetylglu 99.5 1.5E-12 3.3E-17 142.8 18.2 197 45-273 142-345 (365)
87 PF13692 Glyco_trans_1_4: Glyc 99.5 1.7E-13 3.6E-18 128.4 8.6 132 103-259 3-135 (135)
88 cd01635 Glycosyltransferase_GT 99.4 1.8E-12 3.9E-17 127.9 12.1 118 107-241 109-229 (229)
89 cd03786 GT1_UDP-GlcNAc_2-Epime 99.4 1E-11 2.2E-16 134.9 17.6 194 42-262 139-340 (363)
90 TIGR03713 acc_sec_asp1 accesso 99.4 6.7E-12 1.5E-16 145.4 16.8 165 104-293 321-519 (519)
91 KOG1387 Glycosyltransferase [C 99.2 2.1E-09 4.6E-14 116.2 24.1 265 5-299 170-462 (465)
92 PLN03064 alpha,alpha-trehalose 99.2 4.2E-10 9E-15 137.1 20.3 237 38-296 281-562 (934)
93 TIGR00215 lpxB lipid-A-disacch 99.0 1.5E-08 3.3E-13 113.3 21.5 164 89-276 178-365 (385)
94 PF13524 Glyco_trans_1_2: Glyc 99.0 1E-09 2.2E-14 97.7 9.6 90 194-290 1-91 (92)
95 TIGR02919 accessory Sec system 99.0 6.6E-09 1.4E-13 118.4 17.4 185 43-278 238-427 (438)
96 COG1519 KdtA 3-deoxy-D-manno-o 98.9 1.4E-07 3E-12 105.5 22.5 236 30-294 163-416 (419)
97 KOG2941 Beta-1,4-mannosyltrans 98.9 4.2E-08 9E-13 106.5 17.7 163 102-278 254-425 (444)
98 COG0707 MurG UDP-N-acetylgluco 98.9 3.9E-07 8.4E-12 101.5 23.5 231 5-290 112-352 (357)
99 TIGR02094 more_P_ylases alpha- 98.7 3.9E-07 8.6E-12 107.7 19.4 184 98-293 385-598 (601)
100 PF05693 Glycogen_syn: Glycoge 98.7 8.8E-07 1.9E-11 103.0 21.4 112 183-298 461-584 (633)
101 PRK10117 trehalose-6-phosphate 98.6 3.3E-06 7.2E-11 97.0 20.5 211 67-298 221-456 (474)
102 PF00982 Glyco_transf_20: Glyc 98.5 6.4E-06 1.4E-10 95.1 21.8 236 38-292 191-471 (474)
103 TIGR03492 conserved hypothetic 98.4 3E-05 6.5E-10 87.6 21.1 202 38-273 154-375 (396)
104 cd04299 GT1_Glycogen_Phosphory 98.3 1.1E-05 2.3E-10 97.8 17.0 184 98-293 474-687 (778)
105 PRK12446 undecaprenyldiphospho 98.3 6.5E-05 1.4E-09 83.5 21.8 168 60-262 149-328 (352)
106 TIGR03568 NeuC_NnaA UDP-N-acet 98.3 4.1E-05 9E-10 85.5 19.7 183 47-257 147-337 (365)
107 PLN02205 alpha,alpha-trehalose 98.2 0.00013 2.7E-09 89.9 23.8 240 38-296 251-552 (854)
108 PF13844 Glyco_transf_41: Glyc 98.2 2.9E-05 6.4E-10 89.1 15.3 182 91-295 274-466 (468)
109 COG0380 OtsA Trehalose-6-phosp 98.1 0.00011 2.4E-09 84.6 19.0 209 66-294 245-478 (486)
110 TIGR01426 MGT glycosyltransfer 97.9 0.00065 1.4E-08 75.7 18.2 103 144-262 254-362 (392)
111 TIGR03590 PseG pseudaminic aci 97.8 0.00033 7.2E-09 75.4 14.7 99 102-226 171-269 (279)
112 PRK02797 4-alpha-L-fucosyltran 97.7 0.0036 7.7E-08 68.5 20.7 242 9-298 66-319 (322)
113 cd03784 GT1_Gtf_like This fami 97.6 0.00072 1.6E-08 75.2 14.1 99 144-260 269-373 (401)
114 PF02684 LpxB: Lipid-A-disacch 97.6 0.0021 4.5E-08 72.5 17.5 152 89-262 172-343 (373)
115 PF07429 Glyco_transf_56: 4-al 97.5 0.017 3.7E-07 64.1 22.3 243 7-297 103-357 (360)
116 COG3914 Spy Predicted O-linked 97.5 0.0022 4.7E-08 74.6 15.3 186 91-298 419-616 (620)
117 COG0763 LpxB Lipid A disacchar 97.4 0.0077 1.7E-07 67.5 18.6 154 88-262 174-347 (381)
118 PF02350 Epimerase_2: UDP-N-ac 97.4 0.002 4.4E-08 71.7 13.5 190 45-261 123-320 (346)
119 PF04101 Glyco_tran_28_C: Glyc 97.4 1.7E-05 3.7E-10 78.1 -3.0 106 145-262 32-147 (167)
120 PRK01021 lpxB lipid-A-disaccha 97.3 0.017 3.8E-07 68.4 20.8 159 88-272 399-581 (608)
121 COG0381 WecB UDP-N-acetylgluco 97.2 0.017 3.7E-07 65.0 18.1 196 47-273 148-352 (383)
122 PF04464 Glyphos_transf: CDP-G 97.1 0.0081 1.7E-07 66.7 14.6 225 6-262 98-339 (369)
123 PHA03392 egt ecdysteroid UDP-g 96.9 0.062 1.3E-06 63.1 20.4 116 170-300 343-468 (507)
124 PF13528 Glyco_trans_1_3: Glyc 96.9 0.014 3.1E-07 62.7 13.9 76 175-256 233-317 (318)
125 TIGR00661 MJ1255 conserved hyp 96.8 0.016 3.4E-07 63.4 13.6 80 175-261 230-316 (321)
126 COG1819 Glycosyl transferases, 96.6 0.047 1E-06 62.3 15.8 85 170-262 281-371 (406)
127 PF04007 DUF354: Protein of un 96.3 0.18 3.8E-06 56.4 17.2 182 41-259 122-310 (335)
128 COG0058 GlgP Glucan phosphoryl 96.2 0.088 1.9E-06 63.8 15.3 138 98-243 483-630 (750)
129 PF00201 UDPGT: UDP-glucoronos 95.9 0.068 1.5E-06 61.7 12.2 116 175-302 324-447 (500)
130 PRK10017 colanic acid biosynth 95.9 2.1 4.5E-05 49.5 23.9 205 38-262 170-395 (426)
131 KOG3742 Glycogen synthase [Car 95.7 0.14 3.1E-06 58.3 13.0 103 184-292 493-609 (692)
132 PF06258 Mito_fiss_Elm1: Mitoc 95.4 0.44 9.5E-06 52.7 15.9 118 91-227 136-259 (311)
133 PLN02562 UDP-glycosyltransfera 95.4 0.23 5E-06 57.5 14.2 83 175-262 329-416 (448)
134 PRK14986 glycogen phosphorylas 95.4 0.2 4.4E-06 61.4 14.2 153 93-251 532-702 (815)
135 PLN03007 UDP-glucosyltransfera 94.9 0.68 1.5E-05 54.0 16.2 81 175-260 346-441 (482)
136 TIGR02093 P_ylase glycogen/sta 94.7 0.25 5.4E-06 60.5 12.4 153 92-251 515-686 (794)
137 PLN02448 UDP-glycosyltransfera 94.7 0.84 1.8E-05 52.9 16.3 81 175-260 324-416 (459)
138 COG4641 Uncharacterized protei 94.7 0.08 1.7E-06 59.4 7.5 117 175-296 238-362 (373)
139 PLN03004 UDP-glycosyltransfera 94.7 0.48 1E-05 55.0 14.1 83 175-262 335-427 (451)
140 cd04300 GT1_Glycogen_Phosphory 94.7 0.35 7.6E-06 59.4 13.4 146 92-242 518-681 (797)
141 PLN02410 UDP-glucoronosyl/UDP- 94.5 0.61 1.3E-05 54.1 14.5 82 175-261 325-412 (451)
142 PLN02670 transferase, transfer 94.4 0.2 4.3E-06 58.5 10.3 114 176-298 341-464 (472)
143 PLN02863 UDP-glucoronosyl/UDP- 94.4 1.4 3E-05 51.6 17.0 97 175-276 344-451 (477)
144 PRK14985 maltodextrin phosphor 94.4 0.28 6.1E-06 60.1 11.6 145 93-242 518-680 (798)
145 PLN02210 UDP-glucosyl transfer 94.4 1.1 2.5E-05 52.0 16.2 81 176-261 326-417 (456)
146 PLN02167 UDP-glycosyltransfera 94.3 1.4 3E-05 51.5 16.9 100 175-279 341-455 (475)
147 PF00343 Phosphorylase: Carboh 94.0 1.7 3.6E-05 53.0 16.9 152 93-250 433-602 (713)
148 PRK14089 ipid-A-disaccharide s 94.0 2.3 5E-05 47.9 17.1 61 145-223 200-260 (347)
149 COG4671 Predicted glycosyl tra 93.3 2.4 5.2E-05 47.7 15.4 106 147-261 253-367 (400)
150 PLN02173 UDP-glucosyl transfer 93.3 2.6 5.7E-05 49.0 16.5 82 175-261 318-410 (449)
151 COG3980 spsG Spore coat polysa 93.2 0.99 2.2E-05 49.3 11.8 104 145-262 186-296 (318)
152 PLN02554 UDP-glycosyltransfera 93.1 1.5 3.2E-05 51.3 14.3 97 175-276 343-458 (481)
153 PF13439 Glyco_transf_4: Glyco 92.7 0.099 2.1E-06 49.8 3.4 70 7-77 101-173 (177)
154 COG1817 Uncharacterized protei 92.7 2.2 4.8E-05 47.3 13.8 187 41-261 123-316 (346)
155 PLN02152 indole-3-acetate beta 91.8 3.6 7.8E-05 48.0 15.2 82 175-261 328-419 (455)
156 COG3660 Predicted nucleoside-d 91.7 8.8 0.00019 41.9 16.6 164 42-226 107-274 (329)
157 PLN02555 limonoid glucosyltran 90.0 8.7 0.00019 45.1 16.1 82 175-261 338-431 (480)
158 PLN02764 glycosyltransferase f 89.8 2.8 6.1E-05 48.8 11.8 70 187-260 329-408 (453)
159 PF05159 Capsule_synth: Capsul 89.5 2.1 4.6E-05 45.6 10.0 60 175-247 183-242 (269)
160 PLN02534 UDP-glycosyltransfera 89.5 9 0.0002 45.2 15.8 79 175-258 345-443 (491)
161 PLN02208 glycosyltransferase f 89.4 2.7 5.8E-05 48.8 11.3 79 175-260 312-402 (442)
162 PF13579 Glyco_trans_4_4: Glyc 89.0 0.59 1.3E-05 43.6 4.7 61 7-72 96-159 (160)
163 TIGR02195 heptsyl_trn_II lipop 88.2 8.4 0.00018 42.2 13.7 110 91-223 163-276 (334)
164 cd03789 GT1_LPS_heptosyltransf 87.9 3.7 8E-05 43.8 10.5 104 101-226 121-226 (279)
165 PF15024 Glyco_transf_18: Glyc 87.1 2.7 5.9E-05 49.8 9.4 81 175-260 323-431 (559)
166 PLN00164 glucosyltransferase; 87.0 5.4 0.00012 46.7 11.9 72 186-261 350-433 (480)
167 PF10087 DUF2325: Uncharacteri 86.8 3.1 6.8E-05 37.9 7.9 78 149-232 3-90 (97)
168 PLN02992 coniferyl-alcohol glu 86.5 6 0.00013 46.5 11.8 82 175-261 339-429 (481)
169 PLN02207 UDP-glycosyltransfera 85.7 3.8 8.3E-05 47.9 9.7 77 175-258 333-425 (468)
170 KOG1192 UDP-glucuronosyl and U 85.4 12 0.00027 43.0 13.7 136 101-262 277-425 (496)
171 KOG1050 Trehalose-6-phosphate 84.8 29 0.00064 43.0 16.9 148 100-262 274-443 (732)
172 PRK10422 lipopolysaccharide co 84.6 10 0.00022 42.0 12.2 103 101-223 183-287 (352)
173 PLN00414 glycosyltransferase f 83.3 9.1 0.0002 44.5 11.4 70 187-260 324-403 (446)
174 KOG4626 O-linked N-acetylgluco 83.1 11 0.00024 45.3 11.7 152 92-262 749-907 (966)
175 PF01075 Glyco_transf_9: Glyco 82.5 9.7 0.00021 39.6 10.3 104 99-223 103-208 (247)
176 KOG3349 Predicted glycosyltran 81.3 24 0.00053 35.6 11.7 122 103-245 5-136 (170)
177 PF03016 Exostosin: Exostosin 81.1 1.5 3.4E-05 46.8 3.9 72 182-255 227-301 (302)
178 TIGR02201 heptsyl_trn_III lipo 81.0 22 0.00048 39.1 12.9 103 101-223 181-285 (344)
179 PRK10916 ADP-heptose:LPS hepto 80.8 25 0.00055 38.9 13.3 111 92-223 170-286 (348)
180 TIGR02193 heptsyl_trn_I lipopo 80.5 31 0.00068 37.4 13.8 100 101-224 179-280 (319)
181 TIGR03609 S_layer_CsaB polysac 79.6 71 0.0015 34.5 16.1 59 160-226 220-278 (298)
182 PRK10964 ADP-heptose:LPS hepto 78.3 18 0.00039 39.5 11.1 42 175-223 235-278 (322)
183 PF04230 PS_pyruv_trans: Polys 75.6 89 0.0019 31.7 14.7 38 181-225 247-284 (286)
184 COG2327 WcaK Polysaccharide py 72.0 88 0.0019 36.0 14.5 92 160-261 253-352 (385)
185 COG1887 TagB Putative glycosyl 71.8 1.9E+02 0.0042 33.2 18.4 193 40-262 144-356 (388)
186 PRK10840 transcriptional regul 70.0 71 0.0015 32.4 12.4 114 145-261 4-128 (216)
187 PF05686 Glyco_transf_90: Glyc 67.5 32 0.00069 39.5 10.1 107 202-313 222-336 (395)
188 COG0859 RfaF ADP-heptose:LPS h 67.4 43 0.00093 37.2 10.9 99 102-224 176-277 (334)
189 COG0373 HemA Glutamyl-tRNA red 67.2 2.5E+02 0.0055 32.7 18.1 94 148-251 205-302 (414)
190 PF00072 Response_reg: Respons 65.1 86 0.0019 27.6 10.5 102 149-254 2-112 (112)
191 PRK00676 hemA glutamyl-tRNA re 64.9 39 0.00085 38.2 9.9 137 143-298 173-321 (338)
192 PLN03015 UDP-glucosyl transfer 63.7 33 0.00071 40.4 9.4 67 188-258 348-425 (470)
193 PRK10360 DNA-binding transcrip 61.7 1.1E+02 0.0024 29.7 11.5 80 180-260 34-119 (196)
194 KOG1021 Acetylglucosaminyltran 60.3 60 0.0013 38.1 10.7 71 183-258 335-408 (464)
195 PRK13940 glutamyl-tRNA reducta 59.1 47 0.001 38.5 9.5 65 183-254 234-301 (414)
196 cd01972 Nitrogenase_VnfE_like 57.4 3.3E+02 0.0071 31.4 16.0 116 119-258 138-264 (426)
197 PF11071 DUF2872: Protein of u 57.0 31 0.00067 33.9 6.3 69 185-257 66-140 (141)
198 cd01967 Nitrogenase_MoFe_alpha 55.0 3.6E+02 0.0079 30.6 17.8 119 117-259 134-258 (406)
199 PF11440 AGT: DNA alpha-glucos 53.7 2.1E+02 0.0045 32.0 12.5 199 38-259 114-353 (355)
200 KOG2884 26S proteasome regulat 50.2 1.7E+02 0.0037 31.4 10.8 131 122-261 85-231 (259)
201 PF01113 DapB_N: Dihydrodipico 50.0 22 0.00048 33.8 4.2 46 183-230 59-104 (124)
202 COG2204 AtoC Response regulato 49.1 2.7E+02 0.0058 33.0 13.4 110 148-262 7-125 (464)
203 PF10933 DUF2827: Protein of u 44.8 2.1E+02 0.0046 32.7 11.3 138 144-293 222-363 (364)
204 PRK09483 response regulator; P 42.4 3.5E+02 0.0075 26.7 11.9 82 179-261 33-123 (217)
205 TIGR03646 YtoQ_fam YtoQ family 42.3 70 0.0015 31.6 6.2 69 185-257 69-143 (144)
206 smart00672 CAP10 Putative lipo 41.2 1.2E+02 0.0027 32.7 8.7 89 202-293 153-246 (256)
207 PF01408 GFO_IDH_MocA: Oxidore 39.9 1.7E+02 0.0037 26.6 8.4 71 142-226 23-95 (120)
208 TIGR01283 nifE nitrogenase mol 37.3 7.3E+02 0.016 28.9 17.9 120 118-261 168-297 (456)
209 KOG0832 Mitochondrial/chloropl 36.7 3.3E+02 0.0072 29.5 10.5 45 193-245 175-220 (251)
210 COG1618 Predicted nucleotide k 35.8 94 0.002 32.0 6.2 75 184-259 93-177 (179)
211 cd05565 PTS_IIB_lactose PTS_II 34.5 88 0.0019 29.2 5.4 77 146-226 2-81 (99)
212 PRK10643 DNA-binding transcrip 33.8 4.7E+02 0.01 25.6 11.6 105 149-258 4-117 (222)
213 PRK05583 ribosomal protein L7A 31.9 2.1E+02 0.0045 26.9 7.5 68 143-215 32-99 (104)
214 TIGR02154 PhoB phosphate regul 31.0 5.2E+02 0.011 25.3 12.1 106 148-258 5-121 (226)
215 PRK10430 DNA-binding transcrip 29.8 6.4E+02 0.014 26.0 11.8 76 181-257 35-121 (239)
216 TIGR01278 DPOR_BchB light-inde 29.6 8.3E+02 0.018 29.0 13.8 59 159-223 177-239 (511)
217 PRK09581 pleD response regulat 29.2 6.1E+02 0.013 28.2 12.1 107 148-259 5-122 (457)
218 PRK09468 ompR osmolarity respo 29.1 6.1E+02 0.013 25.5 12.1 109 144-258 5-122 (239)
219 PF03154 Atrophin-1: Atrophin- 29.0 44 0.00096 42.1 3.2 33 761-794 718-750 (982)
220 cd01965 Nitrogenase_MoFe_beta_ 27.6 9.5E+02 0.021 27.6 13.6 119 118-260 132-274 (428)
221 PRK13435 response regulator; P 27.6 5E+02 0.011 24.1 11.5 111 144-258 5-120 (145)
222 PRK07714 hypothetical protein; 27.3 3E+02 0.0064 25.4 7.6 66 143-213 33-98 (100)
223 PF06189 5-nucleotidase: 5'-nu 26.2 3.7E+02 0.0081 29.5 9.1 90 122-221 17-106 (264)
224 TIGR01035 hemA glutamyl-tRNA r 26.0 9.6E+02 0.021 27.7 13.2 82 144-230 180-281 (417)
225 cd01974 Nitrogenase_MoFe_beta 25.8 1.1E+03 0.023 27.3 13.8 122 117-260 135-278 (435)
226 TIGR02069 cyanophycinase cyano 25.5 2.8E+02 0.006 29.9 8.2 69 158-228 44-127 (250)
227 PRK00045 hemA glutamyl-tRNA re 25.4 8.6E+02 0.019 28.1 12.7 82 144-230 182-284 (423)
228 TIGR01012 Sa_S2_E_A ribosomal 25.4 4.4E+02 0.0095 27.7 9.3 101 148-257 64-168 (196)
229 PRK04175 rpl7ae 50S ribosomal 25.3 3.9E+02 0.0085 25.7 8.3 79 119-214 33-113 (122)
230 PRK10161 transcriptional regul 25.1 6.9E+02 0.015 24.9 12.0 106 148-258 5-121 (229)
231 KOG2264 Exostosin EXT1L [Signa 24.5 2.4E+02 0.0052 34.1 7.7 119 176-301 401-530 (907)
232 TIGR03787 marine_sort_RR prote 24.3 7.1E+02 0.015 24.7 12.2 106 149-258 4-119 (227)
233 PF11271 DUF3068: Protein of u 24.0 39 0.00084 37.3 1.4 22 681-702 208-229 (301)
234 COG2247 LytB Putative cell wal 23.9 4.1E+02 0.0088 30.1 9.0 77 142-226 75-164 (337)
235 PF08465 Herpes_TK_C: Thymidin 23.9 52 0.0011 25.0 1.5 22 405-426 4-25 (33)
236 TIGR00853 pts-lac PTS system, 23.4 1.8E+02 0.0039 26.7 5.4 77 145-226 4-84 (95)
237 CHL00148 orf27 Ycf27; Reviewed 23.0 7.6E+02 0.016 24.6 13.1 110 143-258 5-122 (240)
238 TIGR03682 arCOG04112 arCOG0411 23.0 2.8E+02 0.0061 30.9 7.8 68 149-224 217-290 (308)
239 PRK09958 DNA-binding transcrip 22.6 7.1E+02 0.015 24.1 11.2 81 179-260 31-120 (204)
240 PRK10336 DNA-binding transcrip 22.5 7.3E+02 0.016 24.2 12.3 105 149-258 4-117 (219)
241 PRK10494 hypothetical protein; 22.4 4.1E+02 0.0088 28.8 8.7 83 140-226 117-210 (259)
242 PRK02910 light-independent pro 22.4 1.4E+03 0.03 27.3 14.2 80 159-259 177-260 (519)
243 COG2875 CobM Precorrin-4 methy 22.3 6.9E+02 0.015 27.3 10.0 63 175-246 17-86 (254)
244 PRK10100 DNA-binding transcrip 22.2 8.5E+02 0.018 25.4 10.9 109 148-261 13-129 (216)
245 COG3563 KpsC Capsule polysacch 22.2 1.5E+02 0.0033 35.1 5.6 51 168-227 203-254 (671)
246 PRK05395 3-dehydroquinate dehy 22.1 2.5E+02 0.0053 28.3 6.3 92 160-257 33-140 (146)
247 cd01968 Nitrogenase_NifE_I Nit 22.0 1.2E+03 0.026 26.6 18.9 120 118-260 133-257 (410)
248 PLN02331 phosphoribosylglycina 21.8 6.5E+02 0.014 26.5 9.8 69 143-218 25-103 (207)
249 PF10649 DUF2478: Protein of u 21.7 1.1E+02 0.0023 31.1 3.9 42 185-226 86-132 (159)
250 TIGR03677 rpl7ae 50S ribosomal 21.4 5.3E+02 0.011 24.6 8.3 67 143-214 41-109 (117)
251 PF01989 DUF126: Protein of un 21.3 46 0.001 30.1 1.1 18 695-712 8-26 (82)
252 PRK09836 DNA-binding transcrip 21.3 8.1E+02 0.018 24.3 12.3 105 149-258 4-117 (227)
253 PLN00203 glutamyl-tRNA reducta 21.0 1.5E+03 0.032 27.2 17.3 89 160-251 301-397 (519)
254 TIGR01761 thiaz-red thiazoliny 20.9 4.9E+02 0.011 29.5 9.2 106 144-261 27-138 (343)
255 PRK08883 ribulose-phosphate 3- 20.6 1E+03 0.022 25.1 13.6 79 159-241 95-194 (220)
256 PRK13837 two-component VirA-li 20.4 7E+02 0.015 31.3 11.4 105 148-260 700-815 (828)
257 TIGR00272 DPH2 diphthamide bio 20.4 3.3E+02 0.0071 32.5 8.0 70 148-224 285-360 (496)
258 cd05564 PTS_IIB_chitobiose_lic 20.2 2.1E+02 0.0045 26.2 5.1 75 147-226 2-80 (96)
259 cd05312 NAD_bind_1_malic_enz N 20.1 6.6E+02 0.014 27.8 9.8 39 184-223 96-138 (279)
No 1
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.96 E-value=4.5e-27 Score=258.64 Aligned_cols=272 Identities=18% Similarity=0.195 Sum_probs=210.6
Q ss_pred CCCCEEEEEccchhhhhhhhhhhhhHHHHHHHH--HHHHhccCEEEecCCch-HHH--hhCCCCCCEEEeCCCCCCchhh
Q 003758 6 HSIPLVWIIQEDSLANRLPVYVERGFQNLLSYW--KSVFSRVNVIVFPDYTL-PML--YSVLDAGNFFVIPGSPADVWAV 80 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~~rL~~y~~~g~eklls~~--~~~~~~AD~VV~ps~~l-~~i--~~gld~~ki~VIPnsGVDvw~a 80 (797)
.++|+|.++|+.....................+ ...+..+|.|++.+... ..+ ..+.+.+++.+||| |||.
T Consensus 123 ~~~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~ki~vi~n-gvd~--- 198 (405)
T TIGR03449 123 WGVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLIANTDEEARDLVRHYDADPDRIDVVAP-GADL--- 198 (405)
T ss_pred cCCCEEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeEEECCHHHHHHHHHHcCCChhhEEEECC-CcCH---
Confidence 468999999974321110000000000111111 34678999999887543 222 34677789999998 9998
Q ss_pred hhcccchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCC--C-C
Q 003758 81 EAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNST--D-G 157 (797)
Q Consensus 81 e~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~--~-~ 157 (797)
+.|.+. .....+.+++++.++++|+++|++... ||++.+++|+..+....+ ..+++| +++|... . .
T Consensus 199 ~~~~~~-~~~~~~~~~~~~~~~~~i~~~G~l~~~----K~~~~li~a~~~l~~~~~-----~~~~~l-~ivG~~~~~g~~ 267 (405)
T TIGR03449 199 ERFRPG-DRATERARLGLPLDTKVVAFVGRIQPL----KAPDVLLRAVAELLDRDP-----DRNLRV-IVVGGPSGSGLA 267 (405)
T ss_pred HHcCCC-cHHHHHHhcCCCCCCcEEEEecCCCcc----cCHHHHHHHHHHHHhhCC-----CcceEE-EEEeCCCCCcch
Confidence 666544 345677889998888999999998877 566999999998853221 123885 6777532 1 2
Q ss_pred CHHHHHHHHHHcCCCCCeEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcC
Q 003758 158 YNDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEG 235 (797)
Q Consensus 158 Y~e~Leela~elgL~d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg 235 (797)
+.+.++++++++++.+ +|+|+| +.+++..+|+.||++|+||..| |||++++|||++|+|||+++.++++|++.++
T Consensus 268 ~~~~l~~~~~~~~l~~-~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E--~~g~~~lEAma~G~Pvi~~~~~~~~e~i~~~ 344 (405)
T TIGR03449 268 TPDALIELAAELGIAD-RVRFLPPRPPEELVHVYRAADVVAVPSYNE--SFGLVAMEAQACGTPVVAARVGGLPVAVADG 344 (405)
T ss_pred HHHHHHHHHHHcCCCc-eEEECCCCCHHHHHHHHHhCCEEEECCCCC--CcChHHHHHHHcCCCEEEecCCCcHhhhccC
Confidence 3478889999999987 899999 4688999999999999999998 9999999999999999999999999999999
Q ss_pred CeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhc
Q 003758 236 AQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVLN 298 (797)
Q Consensus 236 ~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLLe~lL~ 298 (797)
.+|++++++|+++++++|.+++++++. +.++++++++.++++.+...+++|.++|.+++.
T Consensus 345 ~~g~~~~~~d~~~la~~i~~~l~~~~~---~~~~~~~~~~~~~~fsw~~~~~~~~~~y~~~~~ 404 (405)
T TIGR03449 345 ETGLLVDGHDPADWADALARLLDDPRT---RIRMGAAAVEHAAGFSWAATADGLLSSYRDALA 404 (405)
T ss_pred CceEECCCCCHHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998876 789999999998877777778999999998763
No 2
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.96 E-value=2.6e-27 Score=264.63 Aligned_cols=251 Identities=16% Similarity=0.148 Sum_probs=202.5
Q ss_pred CCCEEEEEccchhhhhhhhhhhhhHHHHHHHHHHHHhccCEEEecCCchHHH--hhCCCCCCEEEeCCCCCCchhhhhcc
Q 003758 7 SIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYS 84 (797)
Q Consensus 7 ~IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~~~~~~AD~VV~ps~~l~~i--~~gld~~ki~VIPnsGVDvw~ae~F~ 84 (797)
+.|++.++|...+...-. . ......+...++++|.|++.+...... ..|++.+++.+||| |||. +.|.
T Consensus 143 ~~~~~~t~Hg~d~~~~~~---~---~~~~~~~~~~~~~ad~vv~~S~~~~~~l~~~g~~~~ki~vi~n-Gvd~---~~f~ 212 (406)
T PRK15427 143 RGKIATIFHGIDISSREV---L---NHYTPEYQQLFRRGDLMLPISDLWAGRLQKMGCPPEKIAVSRM-GVDM---TRFS 212 (406)
T ss_pred CCCeEEEEcccccccchh---h---hhhhHHHHHHHHhCCEEEECCHHHHHHHHHcCCCHHHEEEcCC-CCCH---HHcC
Confidence 446788899643321100 0 111223556788999999887654433 34777889999998 9998 6664
Q ss_pred cchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHH
Q 003758 85 KSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQE 164 (797)
Q Consensus 85 ~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Lee 164 (797)
.... ....+.+.|+++|++... ||++.+++|+..|. +.+++++ ++|+|+|+.. +.+++
T Consensus 213 ~~~~--------~~~~~~~~il~vGrl~~~----Kg~~~ll~a~~~l~-------~~~~~~~-l~ivG~G~~~--~~l~~ 270 (406)
T PRK15427 213 PRPV--------KAPATPLEIISVARLTEK----KGLHVAIEACRQLK-------EQGVAFR-YRILGIGPWE--RRLRT 270 (406)
T ss_pred CCcc--------ccCCCCeEEEEEeCcchh----cCHHHHHHHHHHHH-------hhCCCEE-EEEEECchhH--HHHHH
Confidence 3211 112356789999999877 56699999998774 3457899 5899999875 89999
Q ss_pred HHHHcCCCCCeEEEec--ChhhHHHHHHHcCEEEEccCC------CCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCC
Q 003758 165 VASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQ------VEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGA 236 (797)
Q Consensus 165 la~elgL~d~~V~flG--~~edl~~~L~aADV~V~PS~~------Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~ 236 (797)
+++++++.+ +|+|.| +.+++.++|+.||++|+||.. | |||++++||||||+|||+|+.+|++|++.++.
T Consensus 271 ~~~~~~l~~-~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~E--g~p~~llEAma~G~PVI~t~~~g~~E~v~~~~ 347 (406)
T PRK15427 271 LIEQYQLED-VVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDME--GIPVALMEAMAVGIPVVSTLHSGIPELVEADK 347 (406)
T ss_pred HHHHcCCCC-eEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCcc--CccHHHHHHHhCCCCEEEeCCCCchhhhcCCC
Confidence 999999988 999999 567899999999999999975 6 99999999999999999999999999999999
Q ss_pred eEEEEcCCCHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHHHH
Q 003758 237 QVIFFQKDNPEGLSRAFSLFIS-NGKLSKFARTVASAGRLHAKNMLALDC-VTRYARILEN 295 (797)
Q Consensus 237 nG~Lfd~~D~eeLAeaI~~LLe-dpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y~kLLe~ 295 (797)
+|++++++|+++|+++|..+++ |++. +.+|++++++++.+.|+++. ++++.++|++
T Consensus 348 ~G~lv~~~d~~~la~ai~~l~~~d~~~---~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 348 SGWLVPENDAQALAQRLAAFSQLDTDE---LAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred ceEEeCCCCHHHHHHHHHHHHhCCHHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 9999999999999999999999 8876 89999999999988888877 6799999875
No 3
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.95 E-value=9.7e-27 Score=253.04 Aligned_cols=236 Identities=20% Similarity=0.267 Sum_probs=194.5
Q ss_pred HhccCEEEecCCchHHH---hhCCCCCCEEEeCCCCCCchhhhhcccch-hHHHHHHHcCCCCCCEEEEEEccccccccc
Q 003758 42 FSRVNVIVFPDYTLPML---YSVLDAGNFFVIPGSPADVWAVEAYSKSH-EKYQLRKENGFLKDEIVVVVVGSSFFYNEL 117 (797)
Q Consensus 42 ~~~AD~VV~ps~~l~~i---~~gld~~ki~VIPnsGVDvw~ae~F~~s~-~k~slR~klGL~~d~~vIL~VGrl~~~KGl 117 (797)
...+|.+++.+...... ..+++..++.+||| |||. +.|.+.. .....+.+...+.+.++|+++|++...
T Consensus 134 ~~~~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~n-gvd~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~--- 206 (374)
T TIGR03088 134 RPLIHHYVAVSRDLEDWLRGPVKVPPAKIHQIYN-GVDT---ERFHPSRGDRSPILPPDFFADESVVVGTVGRLQAV--- 206 (374)
T ss_pred HhcCCeEEEeCHHHHHHHHHhcCCChhhEEEecc-Cccc---cccCCCccchhhhhHhhcCCCCCeEEEEEecCCcc---
Confidence 34578888776554443 23677789999998 9998 6665432 222333344456778899999998876
Q ss_pred cccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEE
Q 003758 118 SWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLY 197 (797)
Q Consensus 118 ~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~ 197 (797)
||+..+++|+..+....+ +..++++ ++++|+|+.. +.+++.++++++.+ .|.+.|..+++..+|+.||++|+
T Consensus 207 -Kg~~~li~a~~~l~~~~~---~~~~~~~-l~i~G~g~~~--~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~adi~v~ 278 (374)
T TIGR03088 207 -KDQPTLVRAFALLVRQLP---EGAERLR-LVIVGDGPAR--GACEQMVRAAGLAH-LVWLPGERDDVPALMQALDLFVL 278 (374)
T ss_pred -cCHHHHHHHHHHHHHhCc---ccccceE-EEEecCCchH--HHHHHHHHHcCCcc-eEEEcCCcCCHHHHHHhcCEEEe
Confidence 667999999998865433 1235788 5899998876 88999999999987 89999998999999999999999
Q ss_pred ccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Q 003758 198 GSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHA 277 (797)
Q Consensus 198 PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~a 277 (797)
||..| |||++++|||+||+|||+++.+|.+|++.++.+|++++++|+++++++|..++++++. +..+++++++.+
T Consensus 279 pS~~E--g~~~~~lEAma~G~Pvv~s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~---~~~~~~~a~~~~ 353 (374)
T TIGR03088 279 PSLAE--GISNTILEAMASGLPVIATAVGGNPELVQHGVTGALVPPGDAVALARALQPYVSDPAA---RRAHGAAGRARA 353 (374)
T ss_pred ccccc--cCchHHHHHHHcCCCEEEcCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHHH---HHHHHHHHHHHH
Confidence 99998 9999999999999999999999999999999999999999999999999999999877 788999999998
Q ss_pred HHhcHHHH-HHHHHHHHHHHh
Q 003758 278 KNMLALDC-VTRYARILENVL 297 (797)
Q Consensus 278 k~~~s~e~-i~~Y~kLLe~lL 297 (797)
.+.|+++. +++|.++|++++
T Consensus 354 ~~~fs~~~~~~~~~~~y~~~~ 374 (374)
T TIGR03088 354 EQQFSINAMVAAYAGLYDQLL 374 (374)
T ss_pred HHhCCHHHHHHHHHHHHHHhC
Confidence 76666655 789999998763
No 4
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.95 E-value=1.1e-26 Score=250.07 Aligned_cols=258 Identities=17% Similarity=0.209 Sum_probs=207.1
Q ss_pred CCCEEEEEccchhhhhhhhhhhhhHHHHHHHHHHHHhccCEEEecCCchHHHh--hCCCCCCEEEeCCCCCCchhhhhcc
Q 003758 7 SIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPMLY--SVLDAGNFFVIPGSPADVWAVEAYS 84 (797)
Q Consensus 7 ~IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~~~~~~AD~VV~ps~~l~~i~--~gld~~ki~VIPnsGVDvw~ae~F~ 84 (797)
++|+|+++|........ .. ..+.......++.+|.|++.+....... .....+++.+||| |+|. ..|.
T Consensus 111 ~~~~i~~~h~~~~~~~~---~~---~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~n-~~~~---~~~~ 180 (371)
T cd04962 111 DLPVVTTLHGTDITLVG---QD---PSFQPATRFSIEKSDGVTAVSESLRQETYELFDITKEIEVIPN-FVDE---DRFR 180 (371)
T ss_pred CCcEEEEEcCCcccccc---cc---ccchHHHHHHHhhCCEEEEcCHHHHHHHHHhcCCcCCEEEecC-CcCH---hhcC
Confidence 78999999974332110 00 0111123446788999998876654432 2234678999998 8987 5554
Q ss_pred cchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHH
Q 003758 85 KSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQE 164 (797)
Q Consensus 85 ~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Lee 164 (797)
... ....+.+++++.++++++++|++... |+++.+++++..+.. ..+++ ++++|.+++. +.+++
T Consensus 181 ~~~-~~~~~~~~~~~~~~~~il~~g~l~~~----K~~~~li~a~~~l~~--------~~~~~-l~i~G~g~~~--~~~~~ 244 (371)
T cd04962 181 PKP-DEALKRRLGAPEGEKVLIHISNFRPV----KRIDDVIRIFAKVRK--------EVPAR-LLLVGDGPER--SPAER 244 (371)
T ss_pred CCc-hHHHHHhcCCCCCCeEEEEecccccc----cCHHHHHHHHHHHHh--------cCCce-EEEEcCCcCH--HHHHH
Confidence 332 34566788888899999999998877 566999999987732 24578 5899999876 88999
Q ss_pred HHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcCC
Q 003758 165 VASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKD 244 (797)
Q Consensus 165 la~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~ 244 (797)
.+.++++.+ +|.++|..+++..+|+.||++|+||..| |||++++|||++|+|||+++.++.+|++.++.+|++++++
T Consensus 245 ~~~~~~~~~-~v~~~g~~~~~~~~~~~~d~~v~ps~~E--~~~~~~~EAma~g~PvI~s~~~~~~e~i~~~~~G~~~~~~ 321 (371)
T cd04962 245 LARELGLQD-DVLFLGKQDHVEELLSIADLFLLPSEKE--SFGLAALEAMACGVPVVASNAGGIPEVVKHGETGFLVDVG 321 (371)
T ss_pred HHHHcCCCc-eEEEecCcccHHHHHHhcCEEEeCCCcC--CCccHHHHHHHcCCCEEEeCCCCchhhhcCCCceEEcCCC
Confidence 999999887 8999998889999999999999999988 9999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHHHHH
Q 003758 245 NPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC-VTRYARILENV 296 (797)
Q Consensus 245 D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y~kLLe~l 296 (797)
|+++++++|..++++++. +..|++++++.+.+.|+++. ++.|.++|+++
T Consensus 322 ~~~~l~~~i~~l~~~~~~---~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 322 DVEAMAEYALSLLEDDEL---WQEFSRAARNRAAERFDSERIVPQYEALYRRL 371 (371)
T ss_pred CHHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999999999887 88999999999666666655 78999999763
No 5
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.95 E-value=7.9e-27 Score=265.35 Aligned_cols=259 Identities=20% Similarity=0.270 Sum_probs=204.9
Q ss_pred CCCCEEEEEccchhhhhhhh---------hhhhhHHHHHHH-HHHHHhccCEEEecCCchHHH--hhCCCCCCEEEeCCC
Q 003758 6 HSIPLVWIIQEDSLANRLPV---------YVERGFQNLLSY-WKSVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGS 73 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~~rL~~---------y~~~g~eklls~-~~~~~~~AD~VV~ps~~l~~i--~~gld~~ki~VIPns 73 (797)
.++|+|+++|+.....+... +....+.++... .+.+++.||.|++.+...... ..|.+++++.+|||
T Consensus 196 ~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~Ii~~s~~~~~~~~~~g~~~~ki~vIpN- 274 (475)
T cd03813 196 RGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRITTLYEGNRERQIEDGADPEKIRVIPN- 274 (475)
T ss_pred hCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEEEecCHHHHHHHHHcCCCHHHeEEeCC-
Confidence 47899999998433221100 001011111222 234688999999887654433 45788889999998
Q ss_pred CCCchhhhhcccchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeC
Q 003758 74 PADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGN 153 (797)
Q Consensus 74 GVDvw~ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~ 153 (797)
|+|. +.|.+.... ....+.++|+++|++.+. ||++.+++|+..+. +..++++ ++|+|.
T Consensus 275 gid~---~~f~~~~~~-------~~~~~~~~i~~vGrl~~~----Kg~~~li~a~~~l~-------~~~p~~~-l~IvG~ 332 (475)
T cd03813 275 GIDP---ERFAPARRA-------RPEKEPPVVGLIGRVVPI----KDIKTFIRAAAIVR-------KKIPDAE-GWVIGP 332 (475)
T ss_pred CcCH---HHcCCcccc-------ccCCCCcEEEEEeccccc----cCHHHHHHHHHHHH-------HhCCCeE-EEEECC
Confidence 9998 666443211 234567899999998877 56699999998874 3357899 588898
Q ss_pred CCC--CCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHh
Q 003758 154 STD--GYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEY 231 (797)
Q Consensus 154 g~~--~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~Ei 231 (797)
++. .|.+.++++++++++.+ +|+|+| .+++.++|+.+|++|+||..| |||++++||||||+|||+|+.++++++
T Consensus 333 g~~~~~~~~e~~~li~~l~l~~-~V~f~G-~~~v~~~l~~aDv~vlpS~~E--g~p~~vlEAma~G~PVVatd~g~~~el 408 (475)
T cd03813 333 TDEDPEYAEECRELVESLGLED-NVKFTG-FQNVKEYLPKLDVLVLTSISE--GQPLVILEAMAAGIPVVATDVGSCREL 408 (475)
T ss_pred CCcChHHHHHHHHHHHHhCCCC-eEEEcC-CccHHHHHHhCCEEEeCchhh--cCChHHHHHHHcCCCEEECCCCChHHH
Confidence 743 35677888999999987 999999 778999999999999999998 999999999999999999999999999
Q ss_pred hhc------CCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHHH
Q 003758 232 VAE------GAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC-VTRYARILE 294 (797)
Q Consensus 232 I~D------g~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y~kLLe 294 (797)
+.+ |.+|++++++|+++++++|.++++|++. +.++++++++.++++++++. +++|.++|+
T Consensus 409 v~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~~---~~~~~~~a~~~v~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 409 IEGADDEALGPAGEVVPPADPEALARAILRLLKDPEL---RRAMGEAGRKRVERYYTLERMIDSYRRLYL 475 (475)
T ss_pred hcCCcccccCCceEEECCCCHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 998 6689999999999999999999999987 89999999999999988655 789999884
No 6
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.95 E-value=2e-26 Score=259.23 Aligned_cols=234 Identities=14% Similarity=0.136 Sum_probs=184.3
Q ss_pred HHHHhccCEEEecCCch-HHH---hhCCCCCCEEEeCCCCCCchhhhhcccchh---HH---HHHHHcCCCCCCEEEEEE
Q 003758 39 KSVFSRVNVIVFPDYTL-PML---YSVLDAGNFFVIPGSPADVWAVEAYSKSHE---KY---QLRKENGFLKDEIVVVVV 108 (797)
Q Consensus 39 ~~~~~~AD~VV~ps~~l-~~i---~~gld~~ki~VIPnsGVDvw~ae~F~~s~~---k~---slR~klGL~~d~~vIL~V 108 (797)
...++.+|.|++++... ... +.++++.++.+||| |||. +.|.+... .. .....++..++.++|+++
T Consensus 179 ~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpn-Gvd~---~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 254 (439)
T TIGR02472 179 EETLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPP-GVDL---SRFYPPQSSEETSEIDNLLAPFLKDPEKPPILAI 254 (439)
T ss_pred HHHHHhCCEEEECCHHHHHHHHHhccCCCccceEEECC-CcCh---hhcCCCCccccchhHHHHHHhhccccCCcEEEEE
Confidence 45788999999876432 222 34678889999998 9998 66654321 11 122345566677899999
Q ss_pred ccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCC---------CHHHHHHHHHHcCCCCCeEEEe
Q 003758 109 GSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDG---------YNDALQEVASRLGLLEHSVRHY 179 (797)
Q Consensus 109 Grl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~---------Y~e~Leela~elgL~d~~V~fl 179 (797)
|++.+. ||++.+++|+..+.. .+ ...++++++|++++. +.+.+..++.++++.+ +|+|.
T Consensus 255 Grl~~~----Kg~~~li~A~~~l~~----~~---~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~-~V~f~ 322 (439)
T TIGR02472 255 SRPDRR----KNIPSLVEAYGRSPK----LQ---EMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYG-KVAYP 322 (439)
T ss_pred cCCccc----CCHHHHHHHHHhChh----hh---hhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCc-eEEec
Confidence 998877 566999999976421 11 123333567877642 1223455678889987 99999
Q ss_pred c--ChhhHHHHHHHc----CEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHH
Q 003758 180 G--FNGDVNGVLLMA----DIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAF 253 (797)
Q Consensus 180 G--~~edl~~~L~aA----DV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI 253 (797)
| +.+++..+|+.| |++|+||..| +||++++||||||+|||+|+.+|++|++.++.+|++++++|+++|+++|
T Consensus 323 g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E--~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~G~lv~~~d~~~la~~i 400 (439)
T TIGR02472 323 KHHRPDDVPELYRLAARSRGIFVNPALTE--PFGLTLLEAAACGLPIVATDDGGPRDIIANCRNGLLVDVLDLEAIASAL 400 (439)
T ss_pred CCCCHHHHHHHHHHHhhcCCEEecccccC--CcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCcEEEeCCCCHHHHHHHH
Confidence 9 578899999987 9999999998 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHH
Q 003758 254 SLFISNGKLSKFARTVASAGRLHAKNMLALDC-VTRYARIL 293 (797)
Q Consensus 254 ~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y~kLL 293 (797)
.+++++++. ++.+++++++.+.+.|+++. +++|.+++
T Consensus 401 ~~ll~~~~~---~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 401 EDALSDSSQ---WQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred HHHHhCHHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999987 89999999999887777766 77998876
No 7
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.95 E-value=7.1e-26 Score=246.35 Aligned_cols=268 Identities=17% Similarity=0.207 Sum_probs=203.0
Q ss_pred CCCCCEEEEEccchhhhhh-hhhhhhhHHHHHHHHHHHHhccCEEEecCCchHHH----hhCCCCCCEEEeCCCCCCchh
Q 003758 5 FHSIPLVWIIQEDSLANRL-PVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML----YSVLDAGNFFVIPGSPADVWA 79 (797)
Q Consensus 5 F~~IPVIW~IHE~sL~~rL-~~y~~~g~eklls~~~~~~~~AD~VV~ps~~l~~i----~~gld~~ki~VIPnsGVDvw~ 79 (797)
+.++|+|+++|+....... ......+...........+..+|.|++++...... +.+++.+++.+||| |+|.
T Consensus 104 ~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~~~i~vi~n-g~~~-- 180 (388)
T TIGR02149 104 LYDKPLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIEAADRVIAVSGGMREDILKYYPDLDPEKVHVIYN-GIDT-- 180 (388)
T ss_pred hcCCCEEEEeecccccccccccccccchhHHHHHHHHHHhhCCEEEEccHHHHHHHHHHcCCCCcceEEEecC-CCCh--
Confidence 3579999999974321100 00000000001111234788999999988665432 23677789999998 9997
Q ss_pred hhhcccchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCC--
Q 003758 80 VEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDG-- 157 (797)
Q Consensus 80 ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~-- 157 (797)
..|.+. .....+.+++++.+.++|+++|++... ||++.+++|+..+. ++++ ++++|.++..
T Consensus 181 -~~~~~~-~~~~~~~~~~~~~~~~~i~~~Grl~~~----Kg~~~li~a~~~l~----------~~~~-l~i~g~g~~~~~ 243 (388)
T TIGR02149 181 -KEYKPD-DGNVVLDRYGIDRSRPYILFVGRITRQ----KGVPHLLDAVHYIP----------KDVQ-VVLCAGAPDTPE 243 (388)
T ss_pred -hhcCCC-chHHHHHHhCCCCCceEEEEEcccccc----cCHHHHHHHHHHHh----------hcCc-EEEEeCCCCcHH
Confidence 666543 345677889998888999999998877 56699999998762 3567 4666665543
Q ss_pred CHHHHHHHHHHcCCCCCeEEEec---ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhc
Q 003758 158 YNDALQEVASRLGLLEHSVRHYG---FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE 234 (797)
Q Consensus 158 Y~e~Leela~elgL~d~~V~flG---~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~D 234 (797)
+.+.+++.+..++....+|.+++ +.+++..+|+.||++|+||..| +||++++|||++|+|||+++.++++|++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e--~~g~~~lEA~a~G~PvI~s~~~~~~e~i~~ 321 (388)
T TIGR02149 244 VAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYE--PLGIVNLEAMACGTPVVASATGGIPEVVVD 321 (388)
T ss_pred HHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccC--CCChHHHHHHHcCCCEEEeCCCCHHHHhhC
Confidence 23556666666666332577764 5688999999999999999998 999999999999999999999999999999
Q ss_pred CCeEEEEcCCCH------HHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHHHHHh
Q 003758 235 GAQVIFFQKDNP------EGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC-VTRYARILENVL 297 (797)
Q Consensus 235 g~nG~Lfd~~D~------eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y~kLLe~lL 297 (797)
+.+|++++++|+ ++|+++|..++++++. +..++.++++.+.+.|+++. +++|.++|++++
T Consensus 322 ~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~---~~~~~~~a~~~~~~~~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 322 GETGFLVPPDNSDADGFQAELAKAINILLADPEL---AKKMGIAGRKRAEEEFSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred CCceEEcCCCCCcccchHHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Confidence 999999999998 9999999999999987 88999999999877666655 779999998764
No 8
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.95 E-value=1.4e-25 Score=248.54 Aligned_cols=267 Identities=15% Similarity=0.170 Sum_probs=207.4
Q ss_pred CCCCEEEEEccchhhhh--hhhhhhhhHHHHHHH-HHHHHhccCEEEecCCchHHH--hhCCCCCCEEEeCCCCCCchhh
Q 003758 6 HSIPLVWIIQEDSLANR--LPVYVERGFQNLLSY-WKSVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAV 80 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~~r--L~~y~~~g~eklls~-~~~~~~~AD~VV~ps~~l~~i--~~gld~~ki~VIPnsGVDvw~a 80 (797)
.++|+|.++|+...... ..........++... .+..++.+|.|++.+...... ..+++..++.+||| |||.
T Consensus 130 ~~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~~i~vi~n-gvd~--- 205 (412)
T PRK10307 130 SGARTWLHIQDYEVDAAFGLGLLKGGKVARLATAFERSLLRRFDNVSTISRSMMNKAREKGVAAEKVIFFPN-WSEV--- 205 (412)
T ss_pred hCCCEEEEeccCCHHHHHHhCCccCcHHHHHHHHHHHHHHhhCCEEEecCHHHHHHHHHcCCCcccEEEECC-CcCH---
Confidence 35799999987432110 000111111222222 334688999999887655443 34677789999998 9997
Q ss_pred hhcccchh--HHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCC
Q 003758 81 EAYSKSHE--KYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGY 158 (797)
Q Consensus 81 e~F~~s~~--k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y 158 (797)
+.|.+... ...++++++++.++++|+++|++... ||++.+++|+..+ .+.++++ ++|+|+|+..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~----kg~~~li~a~~~l--------~~~~~~~-l~ivG~g~~~- 271 (412)
T PRK10307 206 ARFQPVADADVDALRAQLGLPDGKKIVLYSGNIGEK----QGLELVIDAARRL--------RDRPDLI-FVICGQGGGK- 271 (412)
T ss_pred hhcCCCCccchHHHHHHcCCCCCCEEEEEcCccccc----cCHHHHHHHHHHh--------ccCCCeE-EEEECCChhH-
Confidence 66654321 34578889999889999999998877 5569999999766 2346899 5899999875
Q ss_pred HHHHHHHHHHcCCCCCeEEEec--ChhhHHHHHHHcCEEEEccCCCCCC--ccHHHHHHHHhCCcEEEcCCCC--hhHhh
Q 003758 159 NDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQG--FPSLIVRAMTFGIPVITPDFPI--IKEYV 232 (797)
Q Consensus 159 ~e~Leela~elgL~d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee~G--FPlvLLEAMA~G~PVIasd~gG--i~EiI 232 (797)
+.++++++++++. +|+|+| +.+++..+|++||++|+||..|..+ +|.+++|||+||+|||+++.+| +.+++
T Consensus 272 -~~l~~~~~~~~l~--~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i 348 (412)
T PRK10307 272 -ARLEKMAQCRGLP--NVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTELGQLV 348 (412)
T ss_pred -HHHHHHHHHcCCC--ceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHH
Confidence 8899999999986 599999 4678999999999999999987211 7889999999999999999876 56888
Q ss_pred hcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHHHHHhc
Q 003758 233 AEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC-VTRYARILENVLN 298 (797)
Q Consensus 233 ~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y~kLLe~lL~ 298 (797)
. .+|++++++|+++|+++|..+++++++ +..|++++++.+++.|+++. +++|.++|++++.
T Consensus 349 ~--~~G~~~~~~d~~~la~~i~~l~~~~~~---~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 410 (412)
T PRK10307 349 E--GIGVCVEPESVEALVAAIAALARQALL---RPKLGTVAREYAERTLDKENVLRQFIADIRGLVA 410 (412)
T ss_pred h--CCcEEeCCCCHHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc
Confidence 7 589999999999999999999999977 89999999999988777666 7799999998875
No 9
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.95 E-value=8.8e-26 Score=255.64 Aligned_cols=260 Identities=12% Similarity=0.151 Sum_probs=199.0
Q ss_pred CCCCEEEEEccchhhhhhhhhhhhhH-HHHHHHHHHHHhccCEEEecCCchHHHh--hC-CCCCCEEEeCCCCCCchhhh
Q 003758 6 HSIPLVWIIQEDSLANRLPVYVERGF-QNLLSYWKSVFSRVNVIVFPDYTLPMLY--SV-LDAGNFFVIPGSPADVWAVE 81 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~~rL~~y~~~g~-eklls~~~~~~~~AD~VV~ps~~l~~i~--~g-ld~~ki~VIPnsGVDvw~ae 81 (797)
.++|+|.+.|...... ...+..... ..+....+..++.+|.|++++....... .+ .+.+++.+||+ |||. +
T Consensus 167 ~~ip~V~~~h~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~n-Gvd~---~ 241 (465)
T PLN02871 167 LCVPLVMSYHTHVPVY-IPRYTFSWLVKPMWDIIRFLHRAADLTLVTSPALGKELEAAGVTAANRIRVWNK-GVDS---E 241 (465)
T ss_pred hCCCEEEEEecCchhh-hhcccchhhHHHHHHHHHHHHhhCCEEEECCHHHHHHHHHcCCCCcCeEEEeCC-ccCc---c
Confidence 4689999998632211 111111111 1111122346778999999876554442 23 34678999998 9998 7
Q ss_pred hcccchhHHHHHHHcC-CCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHH
Q 003758 82 AYSKSHEKYQLRKENG-FLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYND 160 (797)
Q Consensus 82 ~F~~s~~k~slR~klG-L~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e 160 (797)
.|.+.......+.++. ..+++++|+++|++... |+++.+++++..+ ++++ ++|+|+|+.. +
T Consensus 242 ~f~p~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~----K~~~~li~a~~~~-----------~~~~-l~ivG~G~~~--~ 303 (465)
T PLN02871 242 SFHPRFRSEEMRARLSGGEPEKPLIVYVGRLGAE----KNLDFLKRVMERL-----------PGAR-LAFVGDGPYR--E 303 (465)
T ss_pred ccCCccccHHHHHHhcCCCCCCeEEEEeCCCchh----hhHHHHHHHHHhC-----------CCcE-EEEEeCChHH--H
Confidence 7765443445555553 34567899999998777 5568888887544 5788 5899988764 7
Q ss_pred HHHHHHHHcCCCCCeEEEecC--hhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhc---C
Q 003758 161 ALQEVASRLGLLEHSVRHYGF--NGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE---G 235 (797)
Q Consensus 161 ~Leela~elgL~d~~V~flG~--~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~D---g 235 (797)
.++++++. . +|+|+|. .+++..+|+.||++|+||..| +||++++||||||+|||+++.+|++|++.+ +
T Consensus 304 ~l~~~~~~----~-~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E--~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~ 376 (465)
T PLN02871 304 ELEKMFAG----T-PTVFTGMLQGDELSQAYASGDVFVMPSESE--TLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEG 376 (465)
T ss_pred HHHHHhcc----C-CeEEeccCCHHHHHHHHHHCCEEEECCccc--ccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCC
Confidence 77776652 2 5999994 488999999999999999988 999999999999999999999999999999 9
Q ss_pred CeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHH-HHHHHhc
Q 003758 236 AQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYAR-ILENVLN 298 (797)
Q Consensus 236 ~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~k-LLe~lL~ 298 (797)
.+|++++++|+++++++|..++++++. +++|++++++.++++.+...++++.+ +|+.++.
T Consensus 377 ~~G~lv~~~d~~~la~~i~~ll~~~~~---~~~~~~~a~~~~~~fsw~~~a~~l~~~~Y~~~~~ 437 (465)
T PLN02871 377 KTGFLYTPGDVDDCVEKLETLLADPEL---RERMGAAAREEVEKWDWRAATRKLRNEQYSAAIW 437 (465)
T ss_pred CceEEeCCCCHHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987 88999999999988777777788876 6888776
No 10
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.94 E-value=2.5e-25 Score=246.03 Aligned_cols=231 Identities=19% Similarity=0.278 Sum_probs=186.6
Q ss_pred HHhccCEEEecCCchHHH-hhCCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEEEEEccccccccccc
Q 003758 41 VFSRVNVIVFPDYTLPML-YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSW 119 (797)
Q Consensus 41 ~~~~AD~VV~ps~~l~~i-~~gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~K 119 (797)
.+.+++.|++++...... ...++..++.+||| |+|. ..|.+.. ...++.+++++.+.++|+++|++... |
T Consensus 136 ~~~~~~~ii~~S~~~~~~~~~~~~~~~i~vIpn-gvd~---~~~~~~~-~~~~~~~~~~~~~~~~il~~Grl~~~----K 206 (380)
T PRK15484 136 LLDKNAKIIVPSQFLKKFYEERLPNADISIVPN-GFCL---ETYQSNP-QPNLRQQLNISPDETVLLYAGRISPD----K 206 (380)
T ss_pred HhccCCEEEEcCHHHHHHHHhhCCCCCEEEecC-CCCH---HHcCCcc-hHHHHHHhCCCCCCeEEEEeccCccc----c
Confidence 345778888887666554 34566778999998 9997 6665432 44567788998888999999998877 5
Q ss_pred cHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCC-------CHHHHHHHHHHcCCCCCeEEEecC--hhhHHHHHH
Q 003758 120 DYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDG-------YNDALQEVASRLGLLEHSVRHYGF--NGDVNGVLL 190 (797)
Q Consensus 120 n~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~-------Y~e~Leela~elgL~d~~V~flG~--~edl~~~L~ 190 (797)
|++.+++|+..+. +..++++ ++|+|+++.. |.+.+++++.+++ . +|.|+|. .+++..+|+
T Consensus 207 g~~~Li~A~~~l~-------~~~p~~~-lvivG~g~~~~~~~~~~~~~~l~~~~~~l~--~-~v~~~G~~~~~~l~~~~~ 275 (380)
T PRK15484 207 GILLLMQAFEKLA-------TAHSNLK-LVVVGDPTASSKGEKAAYQKKVLEAAKRIG--D-RCIMLGGQPPEKMHNYYP 275 (380)
T ss_pred CHHHHHHHHHHHH-------HhCCCeE-EEEEeCCccccccchhHHHHHHHHHHHhcC--C-cEEEeCCCCHHHHHHHHH
Confidence 6699999998874 3357889 5888987532 3345556666555 3 6899994 578999999
Q ss_pred HcCEEEEccCC-CCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEE-EEcCCCHHHHHHHHHHHHhCcccHHHHHH
Q 003758 191 MADIVLYGSSQ-VEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVI-FFQKDNPEGLSRAFSLFISNGKLSKFART 268 (797)
Q Consensus 191 aADV~V~PS~~-Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~-Lfd~~D~eeLAeaI~~LLedpel~~~r~~ 268 (797)
+||++|+||.. | |||++++||||||+|||+++.+|++|++.++.+|+ ++++.|+++++++|..+++|+++ .+
T Consensus 276 ~aDv~v~pS~~~E--~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d~~~----~~ 349 (380)
T PRK15484 276 LADLVVVPSQVEE--AFCMVAVEAMAAGKPVLASTKGGITEFVLEGITGYHLAEPMTSDSIISDINRTLADPEL----TQ 349 (380)
T ss_pred hCCEEEeCCCCcc--ccccHHHHHHHcCCCEEEeCCCCcHhhcccCCceEEEeCCCCHHHHHHHHHHHHcCHHH----HH
Confidence 99999999986 5 99999999999999999999999999999999999 56789999999999999999873 57
Q ss_pred HHHHHHHHHHHhcHHHH-HHHHHHHHHHHh
Q 003758 269 VASAGRLHAKNMLALDC-VTRYARILENVL 297 (797)
Q Consensus 269 m~~~aRk~ak~~~s~e~-i~~Y~kLLe~lL 297 (797)
+++++++.+.+.|+++. +++|.++|++..
T Consensus 350 ~~~~ar~~~~~~fsw~~~a~~~~~~l~~~~ 379 (380)
T PRK15484 350 IAEQAKDFVFSKYSWEGVTQRFEEQIHNWF 379 (380)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 99999998776666655 779999998753
No 11
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.94 E-value=1.5e-25 Score=270.38 Aligned_cols=243 Identities=9% Similarity=0.072 Sum_probs=193.6
Q ss_pred HHHHHHHHhccCEEEecCCchHH----HhhCCC---------------------CCCEEEeCCCCCCchhhhhcccchhH
Q 003758 35 LSYWKSVFSRVNVIVFPDYTLPM----LYSVLD---------------------AGNFFVIPGSPADVWAVEAYSKSHEK 89 (797)
Q Consensus 35 ls~~~~~~~~AD~VV~ps~~l~~----i~~gld---------------------~~ki~VIPnsGVDvw~ae~F~~s~~k 89 (797)
+..-..++..||.||+++..... +|.+++ ..++.|||+ |||+ +.|.+....
T Consensus 372 i~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPp-GVD~---~~F~P~~~~ 447 (1050)
T TIGR02468 372 IEAEELSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPP-GMEF---SHIVPHDGD 447 (1050)
T ss_pred HHHHHHHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCC-CCcH---HHccCCCcc
Confidence 33345579999999988754332 243333 238999998 9998 777653110
Q ss_pred --------------------HHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEE
Q 003758 90 --------------------YQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVF 149 (797)
Q Consensus 90 --------------------~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLI 149 (797)
..++ .+..+++.++|+++|++.+. ||+..+++|+..+... ...+++. +
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~l~-r~~~~pdkpvIL~VGRL~p~----KGi~~LIeAf~~L~~l-----~~~~nL~--L 515 (1050)
T TIGR02468 448 MDGETEGNEEHPAKPDPPIWSEIM-RFFTNPRKPMILALARPDPK----KNITTLVKAFGECRPL-----RELANLT--L 515 (1050)
T ss_pred ccchhcccccccccccchhhHHHH-hhcccCCCcEEEEEcCCccc----cCHHHHHHHHHHhHhh-----ccCCCEE--E
Confidence 1122 23446777899999999887 6679999999887421 1124554 4
Q ss_pred EEeCCCCC---------CHHHHHHHHHHcCCCCCeEEEec--ChhhHHHHHHHc----CEEEEccCCCCCCccHHHHHHH
Q 003758 150 LCGNSTDG---------YNDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMA----DIVLYGSSQVEQGFPSLIVRAM 214 (797)
Q Consensus 150 IvG~g~~~---------Y~e~Leela~elgL~d~~V~flG--~~edl~~~L~aA----DV~V~PS~~Ee~GFPlvLLEAM 214 (797)
|+|.++.. +...++.++.++++.+ +|.|.| +.+++..+|+.| |+||+||.+| |||++++|||
T Consensus 516 IiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g-~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~E--gFGLvlLEAM 592 (1050)
T TIGR02468 516 IMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYG-QVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIE--PFGLTLIEAA 592 (1050)
T ss_pred EEecCchhhhhhccchHHHHHHHHHHHHhCCCC-eEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccC--CCCHHHHHHH
Confidence 56765431 2356788899999997 999999 578999999988 6999999999 9999999999
Q ss_pred HhCCcEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 003758 215 TFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILE 294 (797)
Q Consensus 215 A~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLLe 294 (797)
|||+|||+|+.+|++|++.++.+|++++++|+++|+++|..+++++++ +++++.++++.+.++.|..++++|.+++.
T Consensus 593 AcGlPVVASdvGG~~EII~~g~nGlLVdP~D~eaLA~AL~~LL~Dpel---r~~m~~~gr~~v~~FSWe~ia~~yl~~i~ 669 (1050)
T TIGR02468 593 AHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQQAIADALLKLVADKQL---WAECRQNGLKNIHLFSWPEHCKTYLSRIA 669 (1050)
T ss_pred HhCCCEEEeCCCCcHHHhccCCcEEEECCCCHHHHHHHHHHHhhCHHH---HHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987 89999999999988777777999999999
Q ss_pred HHhcC
Q 003758 295 NVLNF 299 (797)
Q Consensus 295 ~lL~~ 299 (797)
.++..
T Consensus 670 ~~~~~ 674 (1050)
T TIGR02468 670 SCRPR 674 (1050)
T ss_pred HHhcc
Confidence 88754
No 12
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.94 E-value=6.1e-25 Score=229.64 Aligned_cols=257 Identities=23% Similarity=0.342 Sum_probs=204.7
Q ss_pred CCCCEEEEEccchhhhhhhhhhhhhHHHHHHH-HHHHHhccCEEEecCCchHHH--hhCCCCCCEEEeCCCCCCchhhhh
Q 003758 6 HSIPLVWIIQEDSLANRLPVYVERGFQNLLSY-WKSVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEA 82 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~~rL~~y~~~g~eklls~-~~~~~~~AD~VV~ps~~l~~i--~~gld~~ki~VIPnsGVDvw~ae~ 82 (797)
..+|+||++|+...... .. ....... .......++.+++.+...... ..+++..++.++|+ |+|. ..
T Consensus 103 ~~~~~i~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~vi~~-~~~~---~~ 172 (365)
T cd03807 103 GVPPVIWGIRHSDLDLG--KK----STRLVARLRRLLSSFIPLIVANSAAAAEYHQAIGYPPKKIVVIPN-GVDT---ER 172 (365)
T ss_pred CCCcEEEEecCCccccc--ch----hHhHHHHHHHHhccccCeEEeccHHHHHHHHHcCCChhheeEeCC-CcCH---Hh
Confidence 57899999998554422 01 1111222 223456678877666554443 23788889999998 8997 55
Q ss_pred cccc-hhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHH
Q 003758 83 YSKS-HEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDA 161 (797)
Q Consensus 83 F~~s-~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~ 161 (797)
|... ......+++++++.+.++|+++|++... |+.+.+++++..+.. ..++++ ++++|.++.. ..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~----K~~~~li~a~~~l~~-------~~~~~~-l~i~G~~~~~--~~ 238 (365)
T cd03807 173 FSPDLDARARLREELGLPEDTFLIGIVARLHPQ----KDHATLLRAAALLLK-------KFPNAR-LLLVGDGPDR--AN 238 (365)
T ss_pred cCCcccchHHHHHhcCCCCCCeEEEEecccchh----cCHHHHHHHHHHHHH-------hCCCeE-EEEecCCcch--hH
Confidence 5443 2344566789999999999999998877 566999999988853 357889 5889988876 66
Q ss_pred HHHHHH-HcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEE
Q 003758 162 LQEVAS-RLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIF 240 (797)
Q Consensus 162 Leela~-elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~L 240 (797)
++.... +.++.+ +|.+.|..+++..+|+.||++|+||..| |+|++++|||+||+|||+++.++..+++.+ +|++
T Consensus 239 ~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~adi~v~ps~~e--~~~~~~~Ea~a~g~PvI~~~~~~~~e~~~~--~g~~ 313 (365)
T cd03807 239 LELLALKELGLED-KVILLGERSDVPALLNALDVFVLSSLSE--GFPNVLLEAMACGLPVVATDVGDNAELVGD--TGFL 313 (365)
T ss_pred HHHHHHHhcCCCc-eEEEccccccHHHHHHhCCEEEeCCccc--cCCcHHHHHHhcCCCEEEcCCCChHHHhhc--CCEE
Confidence 666666 788887 8999998889999999999999999998 999999999999999999999999999988 7999
Q ss_pred EcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHHH
Q 003758 241 FQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC-VTRYARILE 294 (797)
Q Consensus 241 fd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y~kLLe 294 (797)
++++|+++++++|..++++++. +.++++++++.+.+.++++. ++.|.++|+
T Consensus 314 ~~~~~~~~l~~~i~~l~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 314 VPPGDPEALAEAIEALLADPAL---RQALGEAARERIEENFSIEAMVEAYEELYR 365 (365)
T ss_pred eCCCCHHHHHHHHHHHHhChHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 9999999999999999999876 88999999999988777766 779998874
No 13
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.94 E-value=2.6e-25 Score=238.92 Aligned_cols=252 Identities=17% Similarity=0.212 Sum_probs=196.0
Q ss_pred CCCCEEEEEccchhhhhhhhhhhhhHHHHHHHHHHHHhccCEEEecCCchHHH--hhCCCCCCEEEeCCCCCCchhhhhc
Q 003758 6 HSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAY 83 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~~~~~~AD~VV~ps~~l~~i--~~gld~~ki~VIPnsGVDvw~ae~F 83 (797)
.++|+|+++|+.................+.......++.+|.|++.+...... ..+++++++.++|+ |+|. +.|
T Consensus 104 ~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~~-g~d~---~~~ 179 (367)
T cd05844 104 LGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALFIAVSQFIRDRLLALGFPPEKVHVHPI-GVDT---AKF 179 (367)
T ss_pred cCCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEEEECCHHHHHHHHHcCCCHHHeEEecC-CCCH---Hhc
Confidence 46899999996432221111110011112223445778999999987665444 34778889999998 8987 555
Q ss_pred ccchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHH
Q 003758 84 SKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQ 163 (797)
Q Consensus 84 ~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Le 163 (797)
.+. ....++++|+++|++... ||++.+++|+..+.. .+++++ ++++|.++.. +.++
T Consensus 180 ~~~----------~~~~~~~~i~~~G~~~~~----K~~~~li~a~~~l~~-------~~~~~~-l~ivG~g~~~--~~~~ 235 (367)
T cd05844 180 TPA----------TPARRPPRILFVGRFVEK----KGPLLLLEAFARLAR-------RVPEVR-LVIIGDGPLL--AALE 235 (367)
T ss_pred CCC----------CCCCCCcEEEEEEeeccc----cChHHHHHHHHHHHH-------hCCCeE-EEEEeCchHH--HHHH
Confidence 332 112356689999998776 666999999988842 357888 5899988754 8889
Q ss_pred HHHHHcCCCCCeEEEecC--hhhHHHHHHHcCEEEEccCC------CCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcC
Q 003758 164 EVASRLGLLEHSVRHYGF--NGDVNGVLLMADIVLYGSSQ------VEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEG 235 (797)
Q Consensus 164 ela~elgL~d~~V~flG~--~edl~~~L~aADV~V~PS~~------Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg 235 (797)
++++++++.+ +|+|+|. .+++..+|+.||++|+||.. | |||++++|||+||+|||+++.++++|++.++
T Consensus 236 ~~~~~~~~~~-~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E--~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~~ 312 (367)
T cd05844 236 ALARALGLGG-RVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAE--GLPVVLLEAQASGVPVVATRHGGIPEAVEDG 312 (367)
T ss_pred HHHHHcCCCC-eEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCcc--CCchHHHHHHHcCCCEEEeCCCCchhheecC
Confidence 9999988887 8999994 57899999999999999974 5 9999999999999999999999999999999
Q ss_pred CeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHHH
Q 003758 236 AQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC-VTRYAR 291 (797)
Q Consensus 236 ~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y~k 291 (797)
.+|++++++|+++++++|.++++++++ +.+++.++++.+++.++++. ++.+.+
T Consensus 313 ~~g~~~~~~d~~~l~~~i~~l~~~~~~---~~~~~~~a~~~~~~~~s~~~~~~~l~~ 366 (367)
T cd05844 313 ETGLLVPEGDVAALAAALGRLLADPDL---RARMGAAGRRRVEERFDLRRQTAKLEA 366 (367)
T ss_pred CeeEEECCCCHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 999999999999999999999999887 88999999999977766665 556654
No 14
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.94 E-value=2e-25 Score=253.37 Aligned_cols=266 Identities=17% Similarity=0.186 Sum_probs=196.9
Q ss_pred CCCCCEEEEEccchhhhhhhh------------hhhhhHHH--HHHHHHHHHhccCEEEecCCchHH-Hhh---------
Q 003758 5 FHSIPLVWIIQEDSLANRLPV------------YVERGFQN--LLSYWKSVFSRVNVIVFPDYTLPM-LYS--------- 60 (797)
Q Consensus 5 F~~IPVIW~IHE~sL~~rL~~------------y~~~g~ek--lls~~~~~~~~AD~VV~ps~~l~~-i~~--------- 60 (797)
+.++|+|.|+|.......... +....++. .++..+..+..+|.|++.+..... +..
T Consensus 144 ~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~ 223 (466)
T PRK00654 144 YPDIKTVFTIHNLAYQGLFPAEILGELGLPAEAFHLEGLEFYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEG 223 (466)
T ss_pred CCCCCEEEEcCCCcCCCcCCHHHHHHcCCChHHcCchhhhcCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHH
Confidence 457999999997543221110 00000000 022334578899999987754332 211
Q ss_pred --CCCCCCEEEeCCCCCCchhhhhcccch------------------hHHHHHHHcCCCC-CCEEEEEEccccccccccc
Q 003758 61 --VLDAGNFFVIPGSPADVWAVEAYSKSH------------------EKYQLRKENGFLK-DEIVVVVVGSSFFYNELSW 119 (797)
Q Consensus 61 --gld~~ki~VIPnsGVDvw~ae~F~~s~------------------~k~slR~klGL~~-d~~vIL~VGrl~~~KGl~K 119 (797)
+....++.+||| |||. +.|.+.. .+..+++++|+++ +.++|+++|++.+. |
T Consensus 224 ~~~~~~~ki~vI~N-Gid~---~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~----K 295 (466)
T PRK00654 224 LLRARSGKLSGILN-GIDY---DIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVSRLTEQ----K 295 (466)
T ss_pred HHHhcccCceEecC-CCCc---cccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEeeccccc----c
Confidence 124678999999 9998 6554421 2457788999975 67899999999888 4
Q ss_pred cHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEE-EecChh-hHHHHHHHcCEEEE
Q 003758 120 DYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVR-HYGFNG-DVNGVLLMADIVLY 197 (797)
Q Consensus 120 n~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~-flG~~e-dl~~~L~aADV~V~ 197 (797)
|++.+++|+..+.. .+++ ++|+|.|+..|.+.+++++++++. +|. +.|..+ .+..+|++||++|+
T Consensus 296 G~~~li~a~~~l~~---------~~~~-lvivG~g~~~~~~~l~~l~~~~~~---~v~~~~g~~~~~~~~~~~~aDv~v~ 362 (466)
T PRK00654 296 GLDLVLEALPELLE---------QGGQ-LVLLGTGDPELEEAFRALAARYPG---KVGVQIGYDEALAHRIYAGADMFLM 362 (466)
T ss_pred ChHHHHHHHHHHHh---------cCCE-EEEEecCcHHHHHHHHHHHHHCCC---cEEEEEeCCHHHHHHHHhhCCEEEe
Confidence 55999999988742 2678 588898875556788888887763 354 456544 46789999999999
Q ss_pred ccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcC------CeEEEEcCCCHHHHHHHHHHHHh---CcccHHHHHH
Q 003758 198 GSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEG------AQVIFFQKDNPEGLSRAFSLFIS---NGKLSKFART 268 (797)
Q Consensus 198 PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg------~nG~Lfd~~D~eeLAeaI~~LLe---dpel~~~r~~ 268 (797)
||.+| |||++++|||+||+|||+++.+|++|++.++ .+|++++++|+++|+++|.++++ +++. +.+
T Consensus 363 PS~~E--~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~~~~---~~~ 437 (466)
T PRK00654 363 PSRFE--PCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQPPL---WRA 437 (466)
T ss_pred CCCCC--CchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHH---HHH
Confidence 99999 9999999999999999999999999999988 89999999999999999999987 4443 667
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHhc
Q 003758 269 VASAGRLHAKNMLALDCVTRYARILENVLN 298 (797)
Q Consensus 269 m~~~aRk~ak~~~s~e~i~~Y~kLLe~lL~ 298 (797)
++.++.+ .++.+..++++|.++|+++++
T Consensus 438 ~~~~~~~--~~fsw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 438 LQRQAMA--QDFSWDKSAEEYLELYRRLLG 465 (466)
T ss_pred HHHHHhc--cCCChHHHHHHHHHHHHHHhh
Confidence 7776653 455555668899999998864
No 15
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.94 E-value=6e-25 Score=243.06 Aligned_cols=252 Identities=17% Similarity=0.192 Sum_probs=196.1
Q ss_pred CCCCEEEEEccchhhhhhhhhhhhhHHHHHH-HHHHHHhccCEEEecCCchHH---HhhCCCCCCEEEeCCCCCCchhhh
Q 003758 6 HSIPLVWIIQEDSLANRLPVYVERGFQNLLS-YWKSVFSRVNVIVFPDYTLPM---LYSVLDAGNFFVIPGSPADVWAVE 81 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~~rL~~y~~~g~eklls-~~~~~~~~AD~VV~ps~~l~~---i~~gld~~ki~VIPnsGVDvw~ae 81 (797)
.++|+|++.|+..-.... .. .... .....++++|.+++.+..... ...+++.+++.+||| |+|. +
T Consensus 112 ~~~~~v~t~h~~~~~~~~---~~----~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~k~~vi~n-gvd~---~ 180 (398)
T cd03796 112 MGLKTVFTDHSLFGFADA---SS----IHTNKLLRFSLADVDHVICVSHTSKENTVLRASLDPERVSVIPN-AVDS---S 180 (398)
T ss_pred cCCcEEEEecccccccch---hh----HHhhHHHHHhhccCCEEEEecHhHhhHHHHHhCCChhhEEEEcC-ccCH---H
Confidence 368999999973211100 00 0011 123357889999988765443 245777889999998 9997 5
Q ss_pred hcccchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHH
Q 003758 82 AYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDA 161 (797)
Q Consensus 82 ~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~ 161 (797)
.|.+.... .+++.++|+++|++... ||++.+++|+..+. ++.++++ ++++|+++.. +.
T Consensus 181 ~f~~~~~~--------~~~~~~~i~~~grl~~~----Kg~~~li~a~~~l~-------~~~~~~~-l~i~G~g~~~--~~ 238 (398)
T cd03796 181 DFTPDPSK--------RDNDKITIVVISRLVYR----KGIDLLVGIIPEIC-------KKHPNVR-FIIGGDGPKR--IL 238 (398)
T ss_pred HcCCCccc--------CCCCceEEEEEeccchh----cCHHHHHHHHHHHH-------hhCCCEE-EEEEeCCchH--HH
Confidence 55433211 34577899999998877 56699999998774 3457899 5899998865 88
Q ss_pred HHHHHHHcCCCCCeEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEE
Q 003758 162 LQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVI 239 (797)
Q Consensus 162 Leela~elgL~d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~ 239 (797)
++++++++++.+ +|+++| +.+++..+|+.||++|+||..| +||++++||||||+|||+++.++++|++.++. ++
T Consensus 239 l~~~~~~~~l~~-~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E--~~g~~~~EAma~G~PVI~s~~gg~~e~i~~~~-~~ 314 (398)
T cd03796 239 LEEMREKYNLQD-RVELLGAVPHERVRDVLVQGHIFLNTSLTE--AFCIAIVEAASCGLLVVSTRVGGIPEVLPPDM-IL 314 (398)
T ss_pred HHHHHHHhCCCC-eEEEeCCCCHHHHHHHHHhCCEEEeCChhh--ccCHHHHHHHHcCCCEEECCCCCchhheeCCc-ee
Confidence 999999999988 999999 4688999999999999999988 99999999999999999999999999998764 44
Q ss_pred EEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHHHHHhc
Q 003758 240 FFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC-VTRYARILENVLN 298 (797)
Q Consensus 240 Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y~kLLe~lL~ 298 (797)
++ +.|+++++++|.++++++.. ...+..++++.+.+.|+++. +++|.++|+.+++
T Consensus 315 ~~-~~~~~~l~~~l~~~l~~~~~---~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~~ 370 (398)
T cd03796 315 LA-EPDVESIVRKLEEAISILRT---GKHDPWSFHNRVKKMYSWEDVAKRTEKVYDRILQ 370 (398)
T ss_pred ec-CCCHHHHHHHHHHHHhChhh---hhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhc
Confidence 44 45899999999999998764 44567788888777777766 7899999999986
No 16
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.94 E-value=7.1e-25 Score=233.69 Aligned_cols=244 Identities=20% Similarity=0.277 Sum_probs=195.4
Q ss_pred CCCCEEEEEccchhhhhhhhhhhhhHHHHHHHHHHHHhccCEEEecCCchHHH---hhCCCCCCEEEeCCCCCCchhhhh
Q 003758 6 HSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML---YSVLDAGNFFVIPGSPADVWAVEA 82 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~~~~~~AD~VV~ps~~l~~i---~~gld~~ki~VIPnsGVDvw~ae~ 82 (797)
.++|+|+++|+...... .+...+..+|.+++.+...... ..+++.+++.+||+ |+|. ..
T Consensus 100 ~~~~~i~~~h~~~~~~~--------------~~~~~~~~~~~vi~~s~~~~~~~~~~~~~~~~k~~~i~n-gi~~---~~ 161 (355)
T cd03819 100 TRPPFVTTVHGFYSVNF--------------RYNAIMARGDRVIAVSNFIADHIRENYGVDPDRIRVIPR-GVDL---DR 161 (355)
T ss_pred cCCCEEEEeCCchhhHH--------------HHHHHHHhcCEEEEeCHHHHHHHHHhcCCChhhEEEecC-Cccc---cc
Confidence 46899999997432111 2344567899999887654443 34677789999998 9997 55
Q ss_pred cccch----hHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCC-
Q 003758 83 YSKSH----EKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDG- 157 (797)
Q Consensus 83 F~~s~----~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~- 157 (797)
|.... ....++++++++.+.++|+++|++... ||++.+++++..+.. ..++++ ++++|.++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~----Kg~~~li~~~~~l~~-------~~~~~~-l~ivG~~~~~~ 229 (355)
T cd03819 162 FDPGAVPPERILALAREWPLPKGKPVILLPGRLTRW----KGQEVFIEALARLKK-------DDPDVH-LLIVGDAQGRR 229 (355)
T ss_pred cCccccchHHHHHHHHHcCCCCCceEEEEeeccccc----cCHHHHHHHHHHHHh-------cCCCeE-EEEEECCcccc
Confidence 54321 122367788888889999999998766 566999999988742 356888 5888987653
Q ss_pred -CHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEcc-CCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcC
Q 003758 158 -YNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGS-SQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEG 235 (797)
Q Consensus 158 -Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS-~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg 235 (797)
+...+.+.+.++++.+ +|.++|..+++..+|+.||++|+|| ..| |||++++|||++|+|||+++.++..+++.++
T Consensus 230 ~~~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~l~~ad~~i~ps~~~e--~~~~~l~EA~a~G~PvI~~~~~~~~e~i~~~ 306 (355)
T cd03819 230 FYYAELLELIKRLGLQD-RVTFVGHCSDMPAAYALADIVVSASTEPE--AFGRTAVEAQAMGRPVIASDHGGARETVRPG 306 (355)
T ss_pred hHHHHHHHHHHHcCCcc-eEEEcCCcccHHHHHHhCCEEEecCCCCC--CCchHHHHHHhcCCCEEEcCCCCcHHHHhCC
Confidence 3445566778888877 8999999889999999999999999 677 9999999999999999999999999999999
Q ss_pred CeEEEEcCCCHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHHHHHhcHHHH
Q 003758 236 AQVIFFQKDNPEGLSRAFSLFIS-NGKLSKFARTVASAGRLHAKNMLALDC 285 (797)
Q Consensus 236 ~nG~Lfd~~D~eeLAeaI~~LLe-dpel~~~r~~m~~~aRk~ak~~~s~e~ 285 (797)
.+|++++++|+++++++|..++. +++. +.++++++++.+.++|+.+.
T Consensus 307 ~~g~~~~~~~~~~l~~~i~~~~~~~~~~---~~~~~~~a~~~~~~~f~~~~ 354 (355)
T cd03819 307 ETGLLVPPGDAEALAQALDQILSLLPEG---RAKMFAKARMCVETLFSYDR 354 (355)
T ss_pred CceEEeCCCCHHHHHHHHHHHHhhCHHH---HHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999976654 6665 89999999999999988753
No 17
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.93 E-value=1.8e-24 Score=227.01 Aligned_cols=260 Identities=16% Similarity=0.204 Sum_probs=197.2
Q ss_pred CCCCEEEEEccchhhhhhhhhhhhhHHHHHHHHHHHHhccCEEEecCCchHH-HhhCCCCCCEEEeCCCCCCchhhhhcc
Q 003758 6 HSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPM-LYSVLDAGNFFVIPGSPADVWAVEAYS 84 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~~~~~~AD~VV~ps~~l~~-i~~gld~~ki~VIPnsGVDvw~ae~F~ 84 (797)
.++|+|+.+|+.........................+..++.+++.+..... ........++.+||+ |+|. +.|.
T Consensus 111 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~~~~~~~~~~~vi~~-~~~~---~~~~ 186 (375)
T cd03821 111 YGIPYVVSPHGMLDPWALPHKALKKRLAWFLFERRLLQAAAAVHATSEQEAAEIRRLGLKAPIAVIPN-GVDI---PPFA 186 (375)
T ss_pred hCCCEEEEccccccccccccchhhhHHHHHHHHHHHHhcCCEEEECCHHHHHHHHhhCCcccEEEcCC-CcCh---hccC
Confidence 4689999999743222111111100011111223467788888888644333 344566778999998 8998 6665
Q ss_pred cchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHH
Q 003758 85 KSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQE 164 (797)
Q Consensus 85 ~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Lee 164 (797)
....... ++.++.+.++++|+++|++... ||++.+++++..+.. .+++++ ++++|.+...+...++.
T Consensus 187 ~~~~~~~-~~~~~~~~~~~~i~~~G~~~~~----K~~~~li~a~~~l~~-------~~~~~~-l~i~G~~~~~~~~~~~~ 253 (375)
T cd03821 187 ALPSRGR-RRKFPILPDKRIILFLGRLHPK----KGLDLLIEAFAKLAE-------RFPDWH-LVIAGPDEGGYRAELKQ 253 (375)
T ss_pred cchhhhh-hhhccCCCCCcEEEEEeCcchh----cCHHHHHHHHHHhhh-------hcCCeE-EEEECCCCcchHHHHHH
Confidence 4432333 6778888889999999998766 667999999988843 357888 58999887766677777
Q ss_pred HHHHcCCCCCeEEEecC--hhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEc
Q 003758 165 VASRLGLLEHSVRHYGF--NGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQ 242 (797)
Q Consensus 165 la~elgL~d~~V~flG~--~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd 242 (797)
++.++++.+ +|+++|. .+++..+|+.||++|+||..| |||++++|||+||+|||+++.+++.+++.+ .+|++++
T Consensus 254 ~~~~~~~~~-~v~~~g~~~~~~~~~~~~~adv~v~ps~~e--~~~~~~~Eama~G~PvI~~~~~~~~~~~~~-~~~~~~~ 329 (375)
T cd03821 254 IAAALGLED-RVTFTGMLYGEDKAAALADADLFVLPSHSE--NFGIVVAEALACGTPVVTTDKVPWQELIEY-GCGWVVD 329 (375)
T ss_pred HHHhcCccc-eEEEcCCCChHHHHHHHhhCCEEEeccccC--CCCcHHHHHHhcCCCEEEcCCCCHHHHhhc-CceEEeC
Confidence 778889887 9999994 458999999999999999998 999999999999999999999999999998 7788876
Q ss_pred CCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHH
Q 003758 243 KDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC-VTRYA 290 (797)
Q Consensus 243 ~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y~ 290 (797)
. +.++++++|..++++++. +..+++++++.+.+.++++. ++.|.
T Consensus 330 ~-~~~~~~~~i~~l~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~~~~ 374 (375)
T cd03821 330 D-DVDALAAALRRALELPQR---LKAMGENGRALVEERFSWTAIAQQLL 374 (375)
T ss_pred C-ChHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 4 559999999999999976 88999999999666666655 55654
No 18
>PRK14099 glycogen synthase; Provisional
Probab=99.93 E-value=6e-25 Score=251.35 Aligned_cols=234 Identities=14% Similarity=0.140 Sum_probs=185.5
Q ss_pred HHHHHhccCEEEecCCchHHH-h---h--CC------CCCCEEEeCCCCCCchhhhhcccch------------------
Q 003758 38 WKSVFSRVNVIVFPDYTLPML-Y---S--VL------DAGNFFVIPGSPADVWAVEAYSKSH------------------ 87 (797)
Q Consensus 38 ~~~~~~~AD~VV~ps~~l~~i-~---~--gl------d~~ki~VIPnsGVDvw~ae~F~~s~------------------ 87 (797)
.+..+..+|.|++.+...... . . |+ ..+++.+||| |||. +.|.+..
T Consensus 203 ~k~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~N-GID~---~~f~p~~~~~~~~~~~~~~~~~k~~ 278 (485)
T PRK14099 203 LKAGLQLADRITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILN-GIDT---AVWNPATDELIAATYDVETLAARAA 278 (485)
T ss_pred HHHHHHhcCeeeecChhHHHHHhcccCCcChHHHHHhhCCCeEEEec-CCch---hhccccccchhhhcCChhHHHhHHH
Confidence 455788999999887654332 1 1 22 3678999998 9998 5554432
Q ss_pred hHHHHHHHcCCCC--CCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHH
Q 003758 88 EKYQLRKENGFLK--DEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEV 165 (797)
Q Consensus 88 ~k~slR~klGL~~--d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leel 165 (797)
.+..+++++|++. +.++|+++|++... ||++.+++|+..+.. .+++ ++|+|.|+..+.+.++++
T Consensus 279 ~k~~l~~~~gl~~~~~~~li~~VgRL~~~----KG~d~Li~A~~~l~~---------~~~~-lvivG~G~~~~~~~l~~l 344 (485)
T PRK14099 279 NKAALQARFGLDPDPDALLLGVISRLSWQ----KGLDLLLEALPTLLG---------EGAQ-LALLGSGDAELEARFRAA 344 (485)
T ss_pred hHHHHHHHcCCCcccCCcEEEEEecCCcc----ccHHHHHHHHHHHHh---------cCcE-EEEEecCCHHHHHHHHHH
Confidence 1356788999974 46789999999888 555999999987742 3578 588898875455788888
Q ss_pred HHHcCCCCCeEEEecChhhHHHHH-HHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcC---------
Q 003758 166 ASRLGLLEHSVRHYGFNGDVNGVL-LMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEG--------- 235 (797)
Q Consensus 166 a~elgL~d~~V~flG~~edl~~~L-~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg--------- 235 (797)
+++++ .+ .+.++|..+++..+| +.||++|+||.+| |||++++|||+||+|+|++++||++|+|.++
T Consensus 345 ~~~~~-~~-v~~~~G~~~~l~~~~~a~aDifv~PS~~E--~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~ 420 (485)
T PRK14099 345 AQAYP-GQ-IGVVIGYDEALAHLIQAGADALLVPSRFE--PCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV 420 (485)
T ss_pred HHHCC-CC-EEEEeCCCHHHHHHHHhcCCEEEECCccC--CCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC
Confidence 87664 22 347899888899887 5799999999998 9999999999999988989999999999875
Q ss_pred CeEEEEcCCCHHHHHHHHHH---HHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhc
Q 003758 236 AQVIFFQKDNPEGLSRAFSL---FISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVLN 298 (797)
Q Consensus 236 ~nG~Lfd~~D~eeLAeaI~~---LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLLe~lL~ 298 (797)
.+|++|+++|+++|+++|.+ +++|++. +++++++++ .+++.|..++++|.++|++++.
T Consensus 421 ~~G~l~~~~d~~~La~ai~~a~~l~~d~~~---~~~l~~~~~--~~~fSw~~~a~~y~~lY~~l~~ 481 (485)
T PRK14099 421 ATGVQFSPVTADALAAALRKTAALFADPVA---WRRLQRNGM--TTDVSWRNPAQHYAALYRSLVA 481 (485)
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhcCHHH---HHHHHHHhh--hhcCChHHHHHHHHHHHHHHHh
Confidence 68999999999999999997 6677766 788888886 3566666668999999999875
No 19
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.93 E-value=1.7e-24 Score=236.52 Aligned_cols=256 Identities=14% Similarity=0.148 Sum_probs=192.9
Q ss_pred CCCEEEEEccchhhhhhhhhhhhhHHHHHHHHHHHHhccCEEEecCCchHHHhhCCCCCCEEEeCCCCCCchhhh--hcc
Q 003758 7 SIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVE--AYS 84 (797)
Q Consensus 7 ~IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~~~~~~AD~VV~ps~~l~~i~~gld~~ki~VIPnsGVDvw~ae--~F~ 84 (797)
++|+|++.|...... . ..+.......++++|.+++++.. ....+++.+++ +||| |||..... .+.
T Consensus 107 ~~~~i~~~H~~~~~~----~-----~~~~~~~~~~~~~~d~~i~~~~~--~~~~~~~~~~~-vipn-gvd~~~~~~~~~~ 173 (372)
T cd03792 107 GRPWIWRCHIDLSSP----N-----RRVWDFLQPYIEDYDAAVFHLPE--YVPPQVPPRKV-IIPP-SIDPLSGKNRELS 173 (372)
T ss_pred CCeEEEEeeeecCCC----c-----HHHHHHHHHHHHhCCEEeecHHH--hcCCCCCCceE-EeCC-CCCCCccccCCCC
Confidence 689999999643111 0 11112234466788988887622 22345655555 9998 99962100 111
Q ss_pred cchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCC---CHHH
Q 003758 85 KSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDG---YNDA 161 (797)
Q Consensus 85 ~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~---Y~e~ 161 (797)
......++.++|++++.++|+++|++... ||++.+++|+..+.. ..++++ |+++|+++.. +.+.
T Consensus 174 -~~~~~~~~~~~~~~~~~~~i~~vgrl~~~----Kg~~~ll~a~~~l~~-------~~~~~~-l~i~G~g~~~~~~~~~~ 240 (372)
T cd03792 174 -PADIEYILEKYGIDPERPYITQVSRFDPW----KDPFGVIDAYRKVKE-------RVPDPQ-LVLVGSGATDDPEGWIV 240 (372)
T ss_pred -HHHHHHHHHHhCCCCCCcEEEEEeccccc----cCcHHHHHHHHHHHh-------hCCCCE-EEEEeCCCCCCchhHHH
Confidence 12345677889999999999999998877 566999999988742 346788 5889988642 1234
Q ss_pred HHHHHHHcCCCCCeEEEecCh----hhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCe
Q 003758 162 LQEVASRLGLLEHSVRHYGFN----GDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQ 237 (797)
Q Consensus 162 Leela~elgL~d~~V~flG~~----edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~n 237 (797)
++++.+..++.+ +|.++|.. +++..+|++||++++||..| |||++++||||||+|||+++.+++++++.++.+
T Consensus 241 ~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~E--g~g~~~lEA~a~G~Pvv~s~~~~~~~~i~~~~~ 317 (372)
T cd03792 241 YEEVLEYAEGDP-DIHVLTLPPVSDLEVNALQRASTVVLQKSIRE--GFGLTVTEALWKGKPVIAGPVGGIPLQIEDGET 317 (372)
T ss_pred HHHHHHHhCCCC-CeEEEecCCCCHHHHHHHHHhCeEEEeCCCcc--CCCHHHHHHHHcCCCEEEcCCCCchhhcccCCc
Confidence 555565677776 79998843 78999999999999999999 999999999999999999999999999999999
Q ss_pred EEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHH-HHHHHHHHHHHHH
Q 003758 238 VIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLAL-DCVTRYARILENV 296 (797)
Q Consensus 238 G~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~-e~i~~Y~kLLe~l 296 (797)
|++++ ++++++.+|.+++.++++ +++|++++++.+.+.|++ .++++|.++|+.+
T Consensus 318 g~~~~--~~~~~a~~i~~ll~~~~~---~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~ 372 (372)
T cd03792 318 GFLVD--TVEEAAVRILYLLRDPEL---RRKMGANAREHVRENFLITRHLKDYLYLISKL 372 (372)
T ss_pred eEEeC--CcHHHHHHHHHHHcCHHH---HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhC
Confidence 99986 567899999999998876 899999999998655555 5588999999863
No 20
>PLN02939 transferase, transferring glycosyl groups
Probab=99.93 E-value=8.9e-25 Score=260.51 Aligned_cols=270 Identities=13% Similarity=0.108 Sum_probs=203.5
Q ss_pred CCCCCCEEEEEccchhhhhhhh------------hh-hhhHH----HHHHHHHHHHhccCEEEecCCchHHH-h------
Q 003758 4 PFHSIPLVWIIQEDSLANRLPV------------YV-ERGFQ----NLLSYWKSVFSRVNVIVFPDYTLPML-Y------ 59 (797)
Q Consensus 4 PF~~IPVIW~IHE~sL~~rL~~------------y~-~~g~e----klls~~~~~~~~AD~VV~ps~~l~~i-~------ 59 (797)
.|.++|+|.|||.......++. +. ..+++ ..++..+..+..+|.|++++...... .
T Consensus 636 ~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G~G 715 (977)
T PLN02939 636 GFNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRG 715 (977)
T ss_pred cCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHHHHhccc
Confidence 4678999999997543222110 00 00110 12334455677799998776443322 1
Q ss_pred ----hCCCCCCEEEeCCCCCCchhhhhcccch------------------hHHHHHHHcCCCC---CCEEEEEEcccccc
Q 003758 60 ----SVLDAGNFFVIPGSPADVWAVEAYSKSH------------------EKYQLRKENGFLK---DEIVVVVVGSSFFY 114 (797)
Q Consensus 60 ----~gld~~ki~VIPnsGVDvw~ae~F~~s~------------------~k~slR~klGL~~---d~~vIL~VGrl~~~ 114 (797)
.+...+++.+||| |||. +.|.+.. .+..+++++|++. +.++|++|||+...
T Consensus 716 L~~~L~~~~~Kl~gIlN-GID~---e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~Q 791 (977)
T PLN02939 716 LQDTLKFHSKKFVGILN-GIDT---DTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQ 791 (977)
T ss_pred hHHHhccccCCceEEec-ceeh---hhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcc
Confidence 1234678999999 9998 6665432 2567899999974 46899999999988
Q ss_pred ccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCC-CCHHHHHHHHHHcCCCCCeEEEecChhh--HHHHHHH
Q 003758 115 NELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTD-GYNDALQEVASRLGLLEHSVRHYGFNGD--VNGVLLM 191 (797)
Q Consensus 115 KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~-~Y~e~Leela~elgL~d~~V~flG~~ed--l~~~L~a 191 (797)
| |++.+++|+..+.. .+++ ++|+|.|+. .|.+.++.++.+++..+ +|.|+|...+ ...+|+.
T Consensus 792 K----GiDlLleA~~~Ll~---------~dvq-LVIvGdGp~~~~e~eL~~La~~l~l~d-rV~FlG~~de~lah~IYAa 856 (977)
T PLN02939 792 K----GVHLIRHAIYKTAE---------LGGQ-FVLLGSSPVPHIQREFEGIADQFQSNN-NIRLILKYDEALSHSIYAA 856 (977)
T ss_pred c----ChHHHHHHHHHHhh---------cCCE-EEEEeCCCcHHHHHHHHHHHHHcCCCC-eEEEEeccCHHHHHHHHHh
Confidence 5 55999999987742 3678 589999975 24577888899998887 8999995433 5689999
Q ss_pred cCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhc---------CCeEEEEcCCCHHHHHHHHHHHHh----
Q 003758 192 ADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE---------GAQVIFFQKDNPEGLSRAFSLFIS---- 258 (797)
Q Consensus 192 ADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~D---------g~nG~Lfd~~D~eeLAeaI~~LLe---- 258 (797)
||++|+||.+| +||++++|||+||+|+|++++||++++|.+ +.||++|+++|+++|+++|.+++.
T Consensus 857 ADIFLmPSr~E--PfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~ 934 (977)
T PLN02939 857 SDMFIIPSMFE--PCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKR 934 (977)
T ss_pred CCEEEECCCcc--CCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999 999999999999999999999999999875 579999999999999999998875
Q ss_pred CcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcC
Q 003758 259 NGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVLNF 299 (797)
Q Consensus 259 dpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLLe~lL~~ 299 (797)
+++. +..|+.++. ..++.|..+++.|.++|+.++..
T Consensus 935 dpe~---~~~L~~~am--~~dFSWe~~A~qYeeLY~~ll~~ 970 (977)
T PLN02939 935 KPEV---WKQLVQKDM--NIDFSWDSSASQYEELYQRAVAR 970 (977)
T ss_pred CHHH---HHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHh
Confidence 5665 777776553 35566666688999999999864
No 21
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.93 E-value=2.5e-24 Score=233.06 Aligned_cols=263 Identities=17% Similarity=0.195 Sum_probs=198.4
Q ss_pred CCCCEEEEEccchhhhhhhhhhhh--hHHHHHHHHHHHHhccCEEEecCCchHHH---hhCCCCCCEEEeCCCCCCchhh
Q 003758 6 HSIPLVWIIQEDSLANRLPVYVER--GFQNLLSYWKSVFSRVNVIVFPDYTLPML---YSVLDAGNFFVIPGSPADVWAV 80 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~~rL~~y~~~--g~eklls~~~~~~~~AD~VV~ps~~l~~i---~~gld~~ki~VIPnsGVDvw~a 80 (797)
.++|+|++.|.............. ............++.+|.|++++...... ..+.+..++.+||+ |+|.
T Consensus 123 ~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~vi~n-g~~~--- 198 (398)
T cd03800 123 LGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVIASTPQEAEELYSLYGAYPRRIRVVPP-GVDL--- 198 (398)
T ss_pred cCCceEEEeecccccCCcccccccccchhhhhhHHHHHHhhCCEEEEcCHHHHHHHHHHccccccccEEECC-CCCc---
Confidence 468999999974321111000000 00111122344788999999987654332 22344556999998 8997
Q ss_pred hhcccchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCC--
Q 003758 81 EAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGY-- 158 (797)
Q Consensus 81 e~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y-- 158 (797)
+.|.........+..++.+.++++|+++|++... ||+..+++++..+.. ..++++ ++++|.+....
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~gr~~~~----k~~~~ll~a~~~l~~-------~~~~~~-l~i~G~~~~~~~~ 266 (398)
T cd03800 199 ERFTPYGRAEARRARLLRDPDKPRILAVGRLDPR----KGIDTLIRAYAELPE-------LRERAN-LVIVGGPRDDILA 266 (398)
T ss_pred cceecccchhhHHHhhccCCCCcEEEEEcccccc----cCHHHHHHHHHHHHH-------hCCCeE-EEEEECCCCcchh
Confidence 6564443333335566777888999999998766 666999999988742 357788 47788765432
Q ss_pred --HHHHHHHHHHcCCCCCeEEEecC--hhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhc
Q 003758 159 --NDALQEVASRLGLLEHSVRHYGF--NGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE 234 (797)
Q Consensus 159 --~e~Leela~elgL~d~~V~flG~--~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~D 234 (797)
...++++++++++.+ +|.++|. .+++..+|+.||++|+||..| +||++++|||++|+|||+++.+++.+++.+
T Consensus 267 ~~~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~adi~l~ps~~e--~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i~~ 343 (398)
T cd03800 267 MDEEELRELARELGVID-RVDFPGRVSREDLPALYRAADVFVNPALYE--PFGLTALEAMACGLPVVATAVGGPRDIVVD 343 (398)
T ss_pred hhhHHHHHHHHhcCCCc-eEEEeccCCHHHHHHHHHhCCEEEeccccc--ccCcHHHHHHhcCCCEEECCCCCHHHHccC
Confidence 344677888888887 8999994 678999999999999999998 999999999999999999999999999999
Q ss_pred CCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHH
Q 003758 235 GAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC-VTRYA 290 (797)
Q Consensus 235 g~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y~ 290 (797)
+++|++++++|+++++++|..++++++. +..++.++++.+.+.|+++. +++|.
T Consensus 344 ~~~g~~~~~~~~~~l~~~i~~l~~~~~~---~~~~~~~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 344 GVTGLLVDPRDPEALAAALRRLLTDPAL---RRRLSRAGLRRARARYTWERVAARLL 397 (398)
T ss_pred CCCeEEeCCCCHHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 9999999999999999999999999876 88999999999977666655 55664
No 22
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.93 E-value=1.2e-24 Score=240.31 Aligned_cols=230 Identities=17% Similarity=0.200 Sum_probs=178.4
Q ss_pred HHHHhccCEEEecCCchHHHhhCCCCCCEEEeCCCCCCchhhhhcccchh-HHHHHHHcCCCCCCEEEEEEcc-cccccc
Q 003758 39 KSVFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHE-KYQLRKENGFLKDEIVVVVVGS-SFFYNE 116 (797)
Q Consensus 39 ~~~~~~AD~VV~ps~~l~~i~~gld~~ki~VIPnsGVDvw~ae~F~~s~~-k~slR~klGL~~d~~vIL~VGr-l~~~KG 116 (797)
...+..+|.||+++......+......++.|||| |||. +.|.+... ....+...++..++++|+++|+ +...
T Consensus 151 ~~~~~~ad~vi~~s~~~~~~~~~~~~~ki~vI~n-gvd~---~~f~~~~~~~~~~~~~~~~~~~~~~i~~vgR~l~~~-- 224 (396)
T cd03818 151 LLALAQADAGVSPTRWQRSTFPAELRSRISVIHD-GIDT---DRLRPDPQARLRLPNGRVLTPGDEVITFVARNLEPY-- 224 (396)
T ss_pred HHHHHhCCEEECCCHHHHhhCcHhhccceEEeCC-Cccc---cccCCCchhhhcccccccCCCCCeEEEEECCCcccc--
Confidence 3578999999998766554433223478999998 9998 76755422 1122233345677889999997 5555
Q ss_pred ccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCC-------HHHHHHHHHHcCC---CCCeEEEec--Chhh
Q 003758 117 LSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGY-------NDALQEVASRLGL---LEHSVRHYG--FNGD 184 (797)
Q Consensus 117 l~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y-------~e~Leela~elgL---~d~~V~flG--~~ed 184 (797)
||++.+++|+..+.. ..++++ ++|+|++...| .+..++++++++. .+ +|+|+| +.++
T Consensus 225 --Kg~~~ll~a~~~l~~-------~~~~~~-lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~V~f~G~v~~~~ 293 (396)
T cd03818 225 --RGFHVFMRALPRLLR-------ARPDAR-VVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLS-RVHFLGRVPYDQ 293 (396)
T ss_pred --cCHHHHHHHHHHHHH-------HCCCcE-EEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcc-eEEEeCCCCHHH
Confidence 677999999988743 357899 47778643211 0123334444442 34 799999 4678
Q ss_pred HHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHH
Q 003758 185 VNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSK 264 (797)
Q Consensus 185 l~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~ 264 (797)
+..+|+.||++|+||..| ++|++++||||||+|||+++.++++|++.++.+|++++++|+++|+++|..++++++.
T Consensus 294 ~~~~l~~adv~v~~s~~e--~~~~~llEAmA~G~PVIas~~~g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~~~~-- 369 (396)
T cd03818 294 YLALLQVSDVHVYLTYPF--VLSWSLLEAMACGCLVVGSDTAPVREVITDGENGLLVDFFDPDALAAAVIELLDDPAR-- 369 (396)
T ss_pred HHHHHHhCcEEEEcCccc--ccchHHHHHHHCCCCEEEcCCCCchhhcccCCceEEcCCCCHHHHHHHHHHHHhCHHH--
Confidence 999999999999999988 9999999999999999999999999999999999999999999999999999999977
Q ss_pred HHHHHHHHHHHHHHHhcHHHH-HHHHH
Q 003758 265 FARTVASAGRLHAKNMLALDC-VTRYA 290 (797)
Q Consensus 265 ~r~~m~~~aRk~ak~~~s~e~-i~~Y~ 290 (797)
+.+|++++++.+.++|+++. +++|.
T Consensus 370 -~~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 370 -RARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred -HHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 89999999999999777665 56664
No 23
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.93 E-value=1.9e-24 Score=255.48 Aligned_cols=211 Identities=16% Similarity=0.104 Sum_probs=174.8
Q ss_pred hCCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHH--cCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhh
Q 003758 60 SVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKE--NGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYAR 137 (797)
Q Consensus 60 ~gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~k--lGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~ 137 (797)
.+++.+++.|||| |||. ..|.+.......+.. ..++.+.++|+++|++.+. ||++.+++|+..+..
T Consensus 477 ~g~~~~kI~VI~N-GVd~---~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~----KG~~~LI~A~a~l~~---- 544 (694)
T PRK15179 477 LGVDERRIPVVYN-GLAP---LKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDN----KRPFLWVEAAQRFAA---- 544 (694)
T ss_pred cCCChhHEEEECC-CcCH---HhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCcc----CCHHHHHHHHHHHHH----
Confidence 4788889999998 9997 666433211111122 2345567899999998776 677999999988853
Q ss_pred hccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhC
Q 003758 138 RNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFG 217 (797)
Q Consensus 138 lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G 217 (797)
..++++ ++|+|+|+.. +.++++++++++.+ +|+|.|..+++..+|+.+|++|+||.+| |||++++|||+||
T Consensus 545 ---~~p~~~-LvIvG~G~~~--~~L~~l~~~lgL~~-~V~flG~~~dv~~ll~aaDv~VlpS~~E--gfp~vlLEAMA~G 615 (694)
T PRK15179 545 ---SHPKVR-FIMVGGGPLL--ESVREFAQRLGMGE-RILFTGLSRRVGYWLTQFNAFLLLSRFE--GLPNVLIEAQFSG 615 (694)
T ss_pred ---HCcCeE-EEEEccCcch--HHHHHHHHHcCCCC-cEEEcCCcchHHHHHHhcCEEEeccccc--cchHHHHHHHHcC
Confidence 347889 5899999865 89999999999998 9999998889999999999999999998 9999999999999
Q ss_pred CcEEEcCCCChhHhhhcCCeEEEEcCCC--HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHHH
Q 003758 218 IPVITPDFPIIKEYVAEGAQVIFFQKDN--PEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC-VTRYARILE 294 (797)
Q Consensus 218 ~PVIasd~gGi~EiI~Dg~nG~Lfd~~D--~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y~kLLe 294 (797)
+|||+|+.+|++|+|.++.+|++++++| +++++++|..++.+... ...+++++++++.+.|+++. ++.|.++|+
T Consensus 616 ~PVVat~~gG~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~---~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 616 VPVVTTLAGGAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAA---DPGIARKAADWASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred CeEEEECCCChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhc---cHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999877 46899999998887654 45678899999976666655 789999985
No 24
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.93 E-value=2.2e-24 Score=247.52 Aligned_cols=254 Identities=11% Similarity=0.100 Sum_probs=192.6
Q ss_pred CCCCEEEEEccchhhhhhhhhhhhhHHHHHHHHHHHHhccCEEEecCCchHH-H---h--hCCCCCCEEEeCCCCCCchh
Q 003758 6 HSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPM-L---Y--SVLDAGNFFVIPGSPADVWA 79 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~~~~~~AD~VV~ps~~l~~-i---~--~gld~~ki~VIPnsGVDvw~ 79 (797)
...|+|-++|...+...........+...........+.+|.||+++..... + + .+....++.+||+ |++.
T Consensus 232 ~~~~~v~~lH~~h~~~~~~~~~~~~~~~~y~~~~~~~~~~D~iI~~S~~~~~~l~~~~~~~~~~~~ki~viP~-g~~~-- 308 (500)
T TIGR02918 232 GPAKLGVVVHAEHFSESATNETYILWNNYYEYQFSNADYIDFFITATDIQNQILKNQFKKYYNIEPRIYTIPV-GSLD-- 308 (500)
T ss_pred CCceEEEEEChhhhcCccCcchhHHHHHHHHHHHhchhhCCEEEECCHHHHHHHHHHhhhhcCCCCcEEEEcC-CCcc--
Confidence 3688999999655433221111100112222222346778999988764322 2 1 1233568999998 7653
Q ss_pred hhhcccchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCH
Q 003758 80 VEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYN 159 (797)
Q Consensus 80 ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~ 159 (797)
..+.+. ....+.+|+++|++.+. |+++.+++|+..+. +..++++ |+|+|.|+..
T Consensus 309 -~~~~~~-----------~~r~~~~il~vGrl~~~----Kg~~~li~A~~~l~-------~~~p~~~-l~i~G~G~~~-- 362 (500)
T TIGR02918 309 -ELQYPE-----------QERKPFSIITASRLAKE----KHIDWLVKAVVKAK-------KSVPELT-FDIYGEGGEK-- 362 (500)
T ss_pred -cccCcc-----------cccCCeEEEEEeccccc----cCHHHHHHHHHHHH-------hhCCCeE-EEEEECchhH--
Confidence 222110 12245689999999877 55699999998885 3457888 5889999875
Q ss_pred HHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC-ChhHhhhcCCeE
Q 003758 160 DALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP-IIKEYVAEGAQV 238 (797)
Q Consensus 160 e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g-Gi~EiI~Dg~nG 238 (797)
+.++++++++++.+ .|+++|.. ++..+|+.||++|+||..| |||++++||||||+|||+++.+ |.+|+|.++.+|
T Consensus 363 ~~l~~~i~~~~l~~-~V~f~G~~-~~~~~~~~adv~v~pS~~E--gfgl~~lEAma~G~PVI~~dv~~G~~eiI~~g~nG 438 (500)
T TIGR02918 363 QKLQKIINENQAQD-YIHLKGHR-NLSEVYKDYELYLSASTSE--GFGLTLMEAVGSGLGMIGFDVNYGNPTFIEDNKNG 438 (500)
T ss_pred HHHHHHHHHcCCCC-eEEEcCCC-CHHHHHHhCCEEEEcCccc--cccHHHHHHHHhCCCEEEecCCCCCHHHccCCCCE
Confidence 88999999999988 99999964 7999999999999999998 9999999999999999999987 899999999999
Q ss_pred EEEcCC----C----HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 003758 239 IFFQKD----N----PEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENV 296 (797)
Q Consensus 239 ~Lfd~~----D----~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLLe~l 296 (797)
++++++ | +++|+++|..+++ ++. +.+|++++++.++++.+..++++|.++++++
T Consensus 439 ~lv~~~~~~~d~~~~~~~la~~I~~ll~-~~~---~~~~~~~a~~~a~~fs~~~v~~~w~~ll~~~ 500 (500)
T TIGR02918 439 YLIPIDEEEDDEDQIITALAEKIVEYFN-SND---IDAFHEYSYQIAEGFLTANIIEKWKKLVREV 500 (500)
T ss_pred EEEeCCccccchhHHHHHHHHHHHHHhC-hHH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 999843 3 8899999999994 444 7899999999999888888899999998763
No 25
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.93 E-value=4e-24 Score=225.53 Aligned_cols=255 Identities=18% Similarity=0.249 Sum_probs=198.9
Q ss_pred CCCCEEEEEccchhhhhhhhhhhhhHHHH-HHHHHHHHhccCEEEecCCchHHHhhCCCCCCEEEeCCCCCCchhhhhcc
Q 003758 6 HSIPLVWIIQEDSLANRLPVYVERGFQNL-LSYWKSVFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYS 84 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~~rL~~y~~~g~ekl-ls~~~~~~~~AD~VV~ps~~l~~i~~gld~~ki~VIPnsGVDvw~ae~F~ 84 (797)
.++|+|+.+|+... .....+........ .......++.+|.+++++.............++.++|+ |+|. +.|.
T Consensus 106 ~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~~~~~~~~~~~~-g~~~---~~~~ 180 (364)
T cd03814 106 LGIPVVTSYHTDFP-EYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLADELRARGFRRVRLWPR-GVDT---ELFH 180 (364)
T ss_pred cCCCEEEEEecChH-HHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHHHHhccCCCceeecCC-Cccc---cccC
Confidence 46899999997532 11111111112222 22334577899999999877766555555568899997 8997 6665
Q ss_pred cchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHH
Q 003758 85 KSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQE 164 (797)
Q Consensus 85 ~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Lee 164 (797)
+.......+.+++ ..+.++|+++|++... |+++.+++++..+. +. ++++ ++++|.++.. +.++
T Consensus 181 ~~~~~~~~~~~~~-~~~~~~i~~~G~~~~~----k~~~~~i~~~~~l~-------~~-~~~~-l~i~G~~~~~--~~~~- 243 (364)
T cd03814 181 PRRRDEALRARLG-PPDRPVLLYVGRLAPE----KNLEALLDADLPLR-------RR-PPVR-LVIVGDGPAR--ARLE- 243 (364)
T ss_pred cccccHHHHHHhC-CCCCeEEEEEeccccc----cCHHHHHHHHHHhh-------hc-CCce-EEEEeCCchH--HHHh-
Confidence 5433444455566 5667899999997766 66799999998873 23 6788 5899988764 4443
Q ss_pred HHHHcCCCCCeEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEc
Q 003758 165 VASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQ 242 (797)
Q Consensus 165 la~elgL~d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd 242 (797)
+..+ +|.+.| +.+++..+|+.||++|+||..| +||++++||||||+|||+++.++..+++.++.+|++++
T Consensus 244 -----~~~~-~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e--~~~~~~lEa~a~g~PvI~~~~~~~~~~i~~~~~g~~~~ 315 (364)
T cd03814 244 -----ARYP-NVHFLGFLDGEELAAAYASADVFVFPSRTE--TFGLVVLEAMASGLPVVAPDAGGPADIVTDGENGLLVE 315 (364)
T ss_pred -----ccCC-cEEEEeccCHHHHHHHHHhCCEEEECcccc--cCCcHHHHHHHcCCCEEEcCCCCchhhhcCCcceEEcC
Confidence 3444 799999 6788999999999999999998 99999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 003758 243 KDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARIL 293 (797)
Q Consensus 243 ~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLL 293 (797)
++|.++++++|..++.+++. +.++++++++.+.++.+...++.+.++|
T Consensus 316 ~~~~~~l~~~i~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 316 PGDAEAFAAALAALLADPEL---RRRMAARARAEAERRSWEAFLDNLLEAY 363 (364)
T ss_pred CCCHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHhhcCHHHHHHHHHHhh
Confidence 99999999999999999987 8999999999997777777788888876
No 26
>PRK14098 glycogen synthase; Provisional
Probab=99.93 E-value=1.4e-24 Score=248.54 Aligned_cols=267 Identities=16% Similarity=0.164 Sum_probs=197.7
Q ss_pred CCCCCCEEEEEccchhhhhhhh---------hhhhhHH---HHHHHHHHHHhccCEEEecCCchHH-Hhh------CCC-
Q 003758 4 PFHSIPLVWIIQEDSLANRLPV---------YVERGFQ---NLLSYWKSVFSRVNVIVFPDYTLPM-LYS------VLD- 63 (797)
Q Consensus 4 PF~~IPVIW~IHE~sL~~rL~~---------y~~~g~e---klls~~~~~~~~AD~VV~ps~~l~~-i~~------gld- 63 (797)
.|.++|+|.|||.......... ....+.. ..++..+..+..+|.|++++..... +.. |++
T Consensus 168 ~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~~ad~VitVS~~~a~ei~~~~~~~~gl~~ 247 (489)
T PRK14098 168 FFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYTGVEHADLLTTTSPRYAEEIAGDGEEAFGLDK 247 (489)
T ss_pred ccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHHHHHhcCcceeeCHHHHHHhCcCCCCCcChHH
Confidence 4678999999997432111100 0000000 1133345578999999988754433 221 333
Q ss_pred -----CCCEEEeCCCCCCchhhhhcccch------------------hHHHHHHHcCCCC--CCEEEEEEcccccccccc
Q 003758 64 -----AGNFFVIPGSPADVWAVEAYSKSH------------------EKYQLRKENGFLK--DEIVVVVVGSSFFYNELS 118 (797)
Q Consensus 64 -----~~ki~VIPnsGVDvw~ae~F~~s~------------------~k~slR~klGL~~--d~~vIL~VGrl~~~KGl~ 118 (797)
..++.+||| |||. +.|.+.. .+..+++++|++. +.++|+++|++...
T Consensus 248 ~l~~~~~kl~~I~N-GID~---~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~~vgRl~~~---- 319 (489)
T PRK14098 248 VLEERKMRLHGILN-GIDT---RQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVGVIINFDDF---- 319 (489)
T ss_pred HHHhcCCCeeEEeC-Cccc---cccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEEEecccccc----
Confidence 578999999 9998 6555432 2456778899863 56899999999888
Q ss_pred ccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEec--ChhhHHHHHHHcCEEE
Q 003758 119 WDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVL 196 (797)
Q Consensus 119 Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG--~~edl~~~L~aADV~V 196 (797)
|+++.+++|+..+.. .+++ ++|+|.|+..|.+.+++++++++ + +|.+.| +.+++..+|++||++|
T Consensus 320 KG~d~li~a~~~l~~---------~~~~-lvivG~G~~~~~~~l~~l~~~~~--~-~V~~~g~~~~~~~~~~~a~aDi~l 386 (489)
T PRK14098 320 QGAELLAESLEKLVE---------LDIQ-LVICGSGDKEYEKRFQDFAEEHP--E-QVSVQTEFTDAFFHLAIAGLDMLL 386 (489)
T ss_pred CcHHHHHHHHHHHHh---------cCcE-EEEEeCCCHHHHHHHHHHHHHCC--C-CEEEEEecCHHHHHHHHHhCCEEE
Confidence 555999999988742 3688 58899987656688888888763 4 799998 4556899999999999
Q ss_pred EccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhc----CCeEEEEcCCCHHHHHHHHHHHH---hCcccHHHHHHH
Q 003758 197 YGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE----GAQVIFFQKDNPEGLSRAFSLFI---SNGKLSKFARTV 269 (797)
Q Consensus 197 ~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~D----g~nG~Lfd~~D~eeLAeaI~~LL---edpel~~~r~~m 269 (797)
+||..| +||++.+|||++|+|+|+++.||++|++.+ +.+|++|+++|+++|+++|.+++ ++++. +.++
T Consensus 387 ~PS~~E--~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~~~~---~~~~ 461 (489)
T PRK14098 387 MPGKIE--SCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHDEER---WEEL 461 (489)
T ss_pred eCCCCC--CchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcCHHH---HHHH
Confidence 999999 999999999999999999999999988864 67999999999999999999876 45544 5666
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHhc
Q 003758 270 ASAGRLHAKNMLALDCVTRYARILENVLN 298 (797)
Q Consensus 270 ~~~aRk~ak~~~s~e~i~~Y~kLLe~lL~ 298 (797)
+.++. .+++.|...+++|.++|+++++
T Consensus 462 ~~~~~--~~~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 462 VLEAM--ERDFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred HHHHh--cCCCChHHHHHHHHHHHHHHhc
Confidence 55542 2445555668899999998864
No 27
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.93 E-value=1.9e-24 Score=245.11 Aligned_cols=231 Identities=17% Similarity=0.153 Sum_probs=183.1
Q ss_pred HHHHHhccCEEEecCCchHH-Hhh-----CC------CCCCEEEeCCCCCCchhhhhcccc------------------h
Q 003758 38 WKSVFSRVNVIVFPDYTLPM-LYS-----VL------DAGNFFVIPGSPADVWAVEAYSKS------------------H 87 (797)
Q Consensus 38 ~~~~~~~AD~VV~ps~~l~~-i~~-----gl------d~~ki~VIPnsGVDvw~ae~F~~s------------------~ 87 (797)
.+..+..+|.|++.+..... +.. ++ ...++.+||| |||. +.|.+. .
T Consensus 199 ~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~N-Gid~---~~~~p~~~~~~~~~~~~~~~~~k~~ 274 (473)
T TIGR02095 199 LKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILN-GIDT---EVWNPATDPYLKANYSADDLAGKAE 274 (473)
T ss_pred HHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeC-CCCc---cccCCCCCcccccCcCccchhhhhh
Confidence 45578999999987754332 211 22 3578999999 9998 655432 1
Q ss_pred hHHHHHHHcCCCC--CCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHH
Q 003758 88 EKYQLRKENGFLK--DEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEV 165 (797)
Q Consensus 88 ~k~slR~klGL~~--d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leel 165 (797)
.+..+++++|++. +.++|+++|++... ||++.+++|+..+.. .+++ ++|+|.|+..+.+.++++
T Consensus 275 ~k~~l~~~~gl~~~~~~~~i~~vGrl~~~----Kg~~~li~a~~~l~~---------~~~~-lvi~G~g~~~~~~~l~~~ 340 (473)
T TIGR02095 275 NKEALQEELGLPVDDDVPLFGVISRLTQQ----KGVDLLLAALPELLE---------LGGQ-LVVLGTGDPELEEALREL 340 (473)
T ss_pred hHHHHHHHcCCCccCCCCEEEEEecCccc----cChHHHHHHHHHHHH---------cCcE-EEEECCCCHHHHHHHHHH
Confidence 2456889999976 77899999999888 555999999988842 2488 588999864455788888
Q ss_pred HHHcCCCCCeEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcC------Ce
Q 003758 166 ASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEG------AQ 237 (797)
Q Consensus 166 a~elgL~d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg------~n 237 (797)
+.+++ + +|.+.+ ..+++..+|++||++|+||.+| +||++++|||+||+|||+++.+|++|+|.++ .+
T Consensus 341 ~~~~~--~-~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E--~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~ 415 (473)
T TIGR02095 341 AERYP--G-NVRVIIGYDEALAHLIYAGADFILMPSRFE--PCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGT 415 (473)
T ss_pred HHHCC--C-cEEEEEcCCHHHHHHHHHhCCEEEeCCCcC--CcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCc
Confidence 87654 3 576665 4556789999999999999999 9999999999999999999999999999998 89
Q ss_pred EEEEcCCCHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 003758 238 VIFFQKDNPEGLSRAFSLFIS----NGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENV 296 (797)
Q Consensus 238 G~Lfd~~D~eeLAeaI~~LLe----dpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLLe~l 296 (797)
|+++++.|+++|+++|.+++. +++. +++|++++.+ +++.+..++++|.++|+++
T Consensus 416 G~l~~~~d~~~la~~i~~~l~~~~~~~~~---~~~~~~~~~~--~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 416 GFLFEEYDPGALLAALSRALRLYRQDPSL---WEALQKNAMS--QDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred eEEeCCCCHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHhc--cCCCcHHHHHHHHHHHHhC
Confidence 999999999999999999988 7665 7788877752 4555666688999999863
No 28
>PLN02316 synthase/transferase
Probab=99.93 E-value=6.1e-24 Score=256.99 Aligned_cols=257 Identities=14% Similarity=0.081 Sum_probs=198.7
Q ss_pred CCCCCCEEEEEccchhhhhhhhhhhhhHHHHHHHHHHHHhccCEEEecCCchHHH-h--hCCC--CCCEEEeCCCCCCch
Q 003758 4 PFHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML-Y--SVLD--AGNFFVIPGSPADVW 78 (797)
Q Consensus 4 PF~~IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~~~~~~AD~VV~ps~~l~~i-~--~gld--~~ki~VIPnsGVDvw 78 (797)
++.++|+|.|||..... . ......+..+|.|++.+...... . ..+. ..++.+||| |||.
T Consensus 735 ~~~~~p~V~TiHnl~~~-------~-------n~lk~~l~~AD~ViTVS~tya~EI~~~~~l~~~~~Kl~vI~N-GID~- 798 (1036)
T PLN02316 735 GLSKARVVFTIHNLEFG-------A-------NHIGKAMAYADKATTVSPTYSREVSGNSAIAPHLYKFHGILN-GIDP- 798 (1036)
T ss_pred ccCCCCEEEEeCCcccc-------h-------hHHHHHHHHCCEEEeCCHHHHHHHHhccCcccccCCEEEEEC-Cccc-
Confidence 46779999999963311 1 11234678899999887655432 1 2333 478999998 9998
Q ss_pred hhhhcccc-------------------hhHHHHHHHcCCCC-CCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhh
Q 003758 79 AVEAYSKS-------------------HEKYQLRKENGFLK-DEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARR 138 (797)
Q Consensus 79 ~ae~F~~s-------------------~~k~slR~klGL~~-d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~l 138 (797)
+.|.+. ..+..+++++|++. +.++|++|||+...| ++++|++|+..++.
T Consensus 799 --~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qK----GvdlLi~Al~~ll~----- 867 (1036)
T PLN02316 799 --DIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQK----GIHLIKHAIWRTLE----- 867 (1036)
T ss_pred --cccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEecccccc----CHHHHHHHHHHHhh-----
Confidence 444321 12456788999984 678999999999885 55999999988752
Q ss_pred ccCCCCcEEEEEEeCCCCC-CHHHHHHHHHHcCC--CCCeEEEecChhh-H-HHHHHHcCEEEEccCCCCCCccHHHHHH
Q 003758 139 NSVEGSFKFVFLCGNSTDG-YNDALQEVASRLGL--LEHSVRHYGFNGD-V-NGVLLMADIVLYGSSQVEQGFPSLIVRA 213 (797)
Q Consensus 139 k~~~pdvkfLIIvG~g~~~-Y~e~Leela~elgL--~d~~V~flG~~ed-l-~~~L~aADV~V~PS~~Ee~GFPlvLLEA 213 (797)
.+++ ++|+|.|++. +...++++++++++ ++ +|.|.|...+ + ..+|++||++|+||.+| +||++.+||
T Consensus 868 ----~~~q-lVIvG~Gpd~~~e~~l~~La~~Lg~~~~~-rV~f~g~~de~lah~iyaaADiflmPS~~E--P~GLvqLEA 939 (1036)
T PLN02316 868 ----RNGQ-VVLLGSAPDPRIQNDFVNLANQLHSSHHD-RARLCLTYDEPLSHLIYAGADFILVPSIFE--PCGLTQLTA 939 (1036)
T ss_pred ----cCcE-EEEEeCCCCHHHHHHHHHHHHHhCccCCC-eEEEEecCCHHHHHHHHHhCcEEEeCCccc--CccHHHHHH
Confidence 3578 4889998653 34678888998876 45 7998874434 3 47999999999999999 999999999
Q ss_pred HHhCCcEEEcCCCChhHhhhcC-------------CeEEEEcCCCHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHHHH
Q 003758 214 MTFGIPVITPDFPIIKEYVAEG-------------AQVIFFQKDNPEGLSRAFSLFISNG-KLSKFARTVASAGRLHAKN 279 (797)
Q Consensus 214 MA~G~PVIasd~gGi~EiI~Dg-------------~nG~Lfd~~D~eeLAeaI~~LLedp-el~~~r~~m~~~aRk~ak~ 279 (797)
|+||+|+|++++||++++|.++ .||++|++.|+++|+.+|.+++.+. +. ...++..+++.+..
T Consensus 940 Ma~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~---~~~~~~~~r~~m~~ 1016 (1036)
T PLN02316 940 MRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDG---RDWFNSLCKRVMEQ 1016 (1036)
T ss_pred HHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhh---HHHHHHHHHHHHHh
Confidence 9999999999999999999884 6899999999999999999999874 33 55678888888766
Q ss_pred hcHHHH-HHHHHHHHHHHhc
Q 003758 280 MLALDC-VTRYARILENVLN 298 (797)
Q Consensus 280 ~~s~e~-i~~Y~kLLe~lL~ 298 (797)
.|+++. +..|.++|+.+.+
T Consensus 1017 dFSW~~~A~~Y~~LY~~a~~ 1036 (1036)
T PLN02316 1017 DWSWNRPALDYMELYHSARK 1036 (1036)
T ss_pred hCCHHHHHHHHHHHHHHHhC
Confidence 555555 7899999998753
No 29
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.92 E-value=2.6e-23 Score=218.61 Aligned_cols=260 Identities=20% Similarity=0.299 Sum_probs=199.9
Q ss_pred CCCCEEEEEccchhh--hhhhhhhhhhHHHHH-HHHHHHHhccCEEEecCCchHHHhh--CCCCCCEEEeCCCCCCchhh
Q 003758 6 HSIPLVWIIQEDSLA--NRLPVYVERGFQNLL-SYWKSVFSRVNVIVFPDYTLPMLYS--VLDAGNFFVIPGSPADVWAV 80 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~--~rL~~y~~~g~ekll-s~~~~~~~~AD~VV~ps~~l~~i~~--gld~~ki~VIPnsGVDvw~a 80 (797)
.++|+|+++|+.... ............... ......+..+|.|++++........ +. ..++.++|+ |+|.
T Consensus 107 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~~~~-~~~~~vi~~-~~~~--- 181 (374)
T cd03817 107 LGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSEKIADLLREYGV-KRPIEVIPT-GIDL--- 181 (374)
T ss_pred cCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccHHHHHHHHhcCC-CCceEEcCC-ccch---
Confidence 368999999974321 111111110011111 2344578899999998876555533 33 345889998 8987
Q ss_pred hhcccchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHH
Q 003758 81 EAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYND 160 (797)
Q Consensus 81 e~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e 160 (797)
..+.... ....++++++..++++|+++|++... |+++.+++++..+.. +.++++ ++++|.++.. +
T Consensus 182 ~~~~~~~-~~~~~~~~~~~~~~~~i~~~G~~~~~----k~~~~l~~~~~~~~~-------~~~~~~-l~i~G~~~~~--~ 246 (374)
T cd03817 182 DRFEPVD-GDDERRKLGIPEDEPVLLYVGRLAKE----KNIDFLIRAFARLLK-------EEPDVK-LVIVGDGPER--E 246 (374)
T ss_pred hccCccc-hhHHHHhcCCCCCCeEEEEEeeeecc----cCHHHHHHHHHHHHH-------hCCCeE-EEEEeCCchH--H
Confidence 5555443 23336677888888999999997766 667999999987742 247888 5889988765 8
Q ss_pred HHHHHHHHcCCCCCeEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeE
Q 003758 161 ALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQV 238 (797)
Q Consensus 161 ~Leela~elgL~d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG 238 (797)
.+++.++++++.+ +|.++| +.+++..+|+.||++++||..| ++|++++|||+||+|||+++.+++++++.++.+|
T Consensus 247 ~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e--~~~~~~~Ea~~~g~PvI~~~~~~~~~~i~~~~~g 323 (374)
T cd03817 247 ELEELARELGLAD-RVIFTGFVPREELPDYYKAADLFVFASTTE--TQGLVLLEAMAAGLPVVAVDAPGLPDLVADGENG 323 (374)
T ss_pred HHHHHHHHcCCCC-cEEEeccCChHHHHHHHHHcCEEEeccccc--CcChHHHHHHHcCCcEEEeCCCChhhheecCcee
Confidence 8888888889887 899999 4578999999999999999998 9999999999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 003758 239 IFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILEN 295 (797)
Q Consensus 239 ~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLLe~ 295 (797)
+++++++. +++++|..++++++. ++.+++++++.+++++ ..+.+.++|++
T Consensus 324 ~~~~~~~~-~~~~~i~~l~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 373 (374)
T cd03817 324 FLFPPGDE-ALAEALLRLLQDPEL---RRRLSKNAEESAEKFS---FAKKVEKLYEE 373 (374)
T ss_pred EEeCCCCH-HHHHHHHHHHhChHH---HHHHHHHHHHHHHHHH---HHHHHHHHHhc
Confidence 99998888 999999999999987 7899999999999886 44455555543
No 30
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.92 E-value=1.2e-23 Score=222.42 Aligned_cols=255 Identities=19% Similarity=0.261 Sum_probs=194.9
Q ss_pred CCCCEEEEEccchhhhhhhhhhhhhHHHHHHHHHHHHhccCEEEecC-CchHHHhhCCCCCCEEEeCCCCCCchhhhhcc
Q 003758 6 HSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPD-YTLPMLYSVLDAGNFFVIPGSPADVWAVEAYS 84 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~~~~~~AD~VV~ps-~~l~~i~~gld~~ki~VIPnsGVDvw~ae~F~ 84 (797)
.++|+|.++|+....... . .........+..+|.|++++ .....+.......++.+||+ |++. ..+.
T Consensus 104 ~~~~~i~~~h~~~~~~~~--~------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~i~~-~~~~---~~~~ 171 (366)
T cd03822 104 LGIPVVVTLHTVLLHEPR--P------GDRALLRLLLRRADAVIVMSSELLRALLLRAYPEKIAVIPH-GVPD---PPAE 171 (366)
T ss_pred cCCCEEEEEecCCccccc--h------hhhHHHHHHHhcCCEEEEeeHHHHHHHHhhcCCCcEEEeCC-CCcC---cccC
Confidence 578999999986211111 0 11122345678999999994 44444443333578999998 8886 4443
Q ss_pred cchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHH-
Q 003758 85 KSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQ- 163 (797)
Q Consensus 85 ~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Le- 163 (797)
.... .++.....+.++|+++|++... |+++.+++|+..+. +.+++++ ++++|.+.... ....
T Consensus 172 ~~~~----~~~~~~~~~~~~i~~~G~~~~~----K~~~~ll~a~~~~~-------~~~~~~~-l~i~G~~~~~~-~~~~~ 234 (366)
T cd03822 172 PPES----LKALGGLDGRPVLLTFGLLRPY----KGLELLLEALPLLV-------AKHPDVR-LLVAGETHPDL-ERYRG 234 (366)
T ss_pred Cchh----hHhhcCCCCCeEEEEEeeccCC----CCHHHHHHHHHHHH-------hhCCCeE-EEEeccCccch-hhhhh
Confidence 3211 1344556678899999998777 56699999998874 3357889 58888876541 1222
Q ss_pred ---HHHHHcCCCCCeEEEecC---hhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCe
Q 003758 164 ---EVASRLGLLEHSVRHYGF---NGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQ 237 (797)
Q Consensus 164 ---ela~elgL~d~~V~flG~---~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~n 237 (797)
++++++++.+ +|.++|. .+++..+|+.||++++||..|.+++|.+++|||++|+|||+++.++ .+.+.++.+
T Consensus 235 ~~~~~i~~~~~~~-~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i~~~~~ 312 (366)
T cd03822 235 EAYALAERLGLAD-RVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEEVLDGGT 312 (366)
T ss_pred hhHhHHHhcCCCC-cEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-hheeeeCCC
Confidence 2377888887 8999985 6789999999999999999886789999999999999999999999 777788889
Q ss_pred EEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 003758 238 VIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILE 294 (797)
Q Consensus 238 G~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLLe 294 (797)
|++++++|+++++++|..++++++. +.++++++++.++++.+...++.|.++|+
T Consensus 313 g~~~~~~d~~~~~~~l~~l~~~~~~---~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 366 (366)
T cd03822 313 GLLVPPGDPAALAEAIRRLLADPEL---AQALRARAREYARAMSWERVAERYLRLLA 366 (366)
T ss_pred cEEEcCCCHHHHHHHHHHHHcChHH---HHHHHHHHHHHHhhCCHHHHHHHHHHHhC
Confidence 9999999999999999999999877 78999999999999666666889988873
No 31
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.92 E-value=1.2e-23 Score=229.17 Aligned_cols=225 Identities=19% Similarity=0.160 Sum_probs=179.9
Q ss_pred HHhccCEEEecCCchHHH----hhCCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEEEEEcccccccc
Q 003758 41 VFSRVNVIVFPDYTLPML----YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNE 116 (797)
Q Consensus 41 ~~~~AD~VV~ps~~l~~i----~~gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KG 116 (797)
.++.+|.|++++...... +.......+.+||| |+|. +.|.+..... .+.......+.++|+++|++...
T Consensus 151 ~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n-~vd~---~~~~~~~~~~-~~~~~~~~~~~~~i~~~grl~~~-- 223 (392)
T cd03805 151 TTGMADKIVVNSNFTASVFKKTFPSLAKNPREVVYP-CVDT---DSFESTSEDP-DPGLLIPKSGKKTFLSINRFERK-- 223 (392)
T ss_pred HhhCceEEEEcChhHHHHHHHHhcccccCCcceeCC-CcCH---HHcCcccccc-cccccccCCCceEEEEEeeeccc--
Confidence 678899999987665543 22333444558898 8997 6665432221 23344566788899999998877
Q ss_pred ccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCC------CHHHHHHHHHH-cCCCCCeEEEec--ChhhHHH
Q 003758 117 LSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDG------YNDALQEVASR-LGLLEHSVRHYG--FNGDVNG 187 (797)
Q Consensus 117 l~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~------Y~e~Leela~e-lgL~d~~V~flG--~~edl~~ 187 (797)
||++.+++++..+..... ..++++ ++++|.++.. |.+.+++++++ +++.+ +|.|+| +.+++..
T Consensus 224 --Kg~~~ll~a~~~l~~~~~----~~~~~~-l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~-~V~f~g~~~~~~~~~ 295 (392)
T cd03805 224 --KNIALAIEAFAILKDKLA----EFKNVR-LVIAGGYDPRVAENVEYLEELQRLAEELLLLED-QVIFLPSISDSQKEL 295 (392)
T ss_pred --CChHHHHHHHHHHHhhcc----cccCeE-EEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCc-eEEEeCCCChHHHHH
Confidence 566999999998853210 126888 5888987652 34678888888 89987 999999 4567899
Q ss_pred HHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHH
Q 003758 188 VLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFAR 267 (797)
Q Consensus 188 ~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~ 267 (797)
+|+.||++++||..| |||++++|||+||+|||+++.++..|++.++.+|+++++ |+++++++|..++++++. +.
T Consensus 296 ~l~~ad~~l~~s~~E--~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~-~~~~~a~~i~~l~~~~~~---~~ 369 (392)
T cd03805 296 LLSSARALLYTPSNE--HFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEP-TPEEFAEAMLKLANDPDL---AD 369 (392)
T ss_pred HHhhCeEEEECCCcC--CCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCC-CHHHHHHHHHHHHhChHH---HH
Confidence 999999999999998 999999999999999999999999999999999999975 899999999999999987 88
Q ss_pred HHHHHHHHHHHHhcHHHHH
Q 003758 268 TVASAGRLHAKNMLALDCV 286 (797)
Q Consensus 268 ~m~~~aRk~ak~~~s~e~i 286 (797)
++++++++.+.+.|+++.+
T Consensus 370 ~~~~~a~~~~~~~~s~~~~ 388 (392)
T cd03805 370 RMGAAGRKRVKEKFSTEAF 388 (392)
T ss_pred HHHHHHHHHHHHhcCHHHH
Confidence 9999999999888777664
No 32
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.92 E-value=3.8e-24 Score=244.91 Aligned_cols=213 Identities=16% Similarity=0.156 Sum_probs=176.7
Q ss_pred hCCCCCCEEEeCCCCCCchhhhhcccchhH-HHHHH--HcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHh
Q 003758 60 SVLDAGNFFVIPGSPADVWAVEAYSKSHEK-YQLRK--ENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYA 136 (797)
Q Consensus 60 ~gld~~ki~VIPnsGVDvw~ae~F~~s~~k-~slR~--klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~ 136 (797)
.+++++++.|||| |||. ..|.+.... ...+. ..+++++.++|+++|++... |++..+++++..+..
T Consensus 357 lgip~~KI~VIyN-GVD~---~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~----Kg~~~LI~A~a~llk--- 425 (578)
T PRK15490 357 LKLEAKHFQVVYN-GVLP---PSTEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGD----KNPFAWIDFAARYLQ--- 425 (578)
T ss_pred hCCCHHHEEEEeC-Ccch---hhcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehh----cCHHHHHHHHHHHHh---
Confidence 4789999999998 9998 666554211 12333 23456677899999998776 677999999987753
Q ss_pred hhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHh
Q 003758 137 RRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTF 216 (797)
Q Consensus 137 ~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~ 216 (797)
..++++ ++|+|+|+.. +.++++++++++.+ +|+|.|..+++..+|+.+|++|+||.+| |||++++|||++
T Consensus 426 ----~~pdir-LvIVGdG~~~--eeLk~la~elgL~d-~V~FlG~~~Dv~~~LaaADVfVlPS~~E--Gfp~vlLEAMA~ 495 (578)
T PRK15490 426 ----HHPATR-FVLVGDGDLR--AEAQKRAEQLGILE-RILFVGASRDVGYWLQKMNVFILFSRYE--GLPNVLIEAQMV 495 (578)
T ss_pred ----HCCCeE-EEEEeCchhH--HHHHHHHHHcCCCC-cEEECCChhhHHHHHHhCCEEEEccccc--CccHHHHHHHHh
Confidence 347889 5899999875 89999999999987 9999999999999999999999999998 999999999999
Q ss_pred CCcEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHH---HHHhCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHH
Q 003758 217 GIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFS---LFISNGKLSKFARTVASAGRLHAKNMLALDC-VTRYARI 292 (797)
Q Consensus 217 G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~---~LLedpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y~kL 292 (797)
|+|||+++.+|.+|+|.++.+|++++++|++++++++. .+...... +..+++++++++++.|+.+. ++.|.++
T Consensus 496 GlPVVATdvGG~~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~---~~~mg~~ARe~V~e~FS~e~Mv~~y~ki 572 (578)
T PRK15490 496 GVPVISTPAGGSAECFIEGVSGFILDDAQTVNLDQACRYAEKLVNLWRS---RTGICQQTQSFLQERFTVEHMVGTFVKT 572 (578)
T ss_pred CCCEEEeCCCCcHHHcccCCcEEEECCCChhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999988888774 34444332 56789999999988888877 7799999
Q ss_pred HHHH
Q 003758 293 LENV 296 (797)
Q Consensus 293 Le~l 296 (797)
|.+.
T Consensus 573 ~~~~ 576 (578)
T PRK15490 573 IASQ 576 (578)
T ss_pred HHhc
Confidence 8753
No 33
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.92 E-value=2.5e-23 Score=215.57 Aligned_cols=241 Identities=20% Similarity=0.309 Sum_probs=192.8
Q ss_pred CCEEEEEccchhhhhhhhhhhhhHHHHHHHHHHHHhccCEEEecCCchHHHhhCCCCCCEEEeCCCCCCchhhhhcccch
Q 003758 8 IPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSH 87 (797)
Q Consensus 8 IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~~~~~~AD~VV~ps~~l~~i~~gld~~ki~VIPnsGVDvw~ae~F~~s~ 87 (797)
+|+|...|.......... .........++.+|.+++.+.............++.++|+ |++. ..+...
T Consensus 106 ~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~vi~~-~~~~---~~~~~~- 173 (348)
T cd03820 106 VKLIVSEHNSPDAYKKRL-------RRLLLRRLLYRRADAVVVLTEEDRALYYKKFNKNVVVIPN-PLPF---PPEEPS- 173 (348)
T ss_pred ccEEEecCCCccchhhhh-------HHHHHHHHHHhcCCEEEEeCHHHHHHhhccCCCCeEEecC-CcCh---hhcccc-
Confidence 488888886443222111 0011245678899999999877654455666789999998 8886 332211
Q ss_pred hHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHH
Q 003758 88 EKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVAS 167 (797)
Q Consensus 88 ~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~ 167 (797)
.+.+.++++++|++... |+++.+++++..+. +..++++ ++++|.++.. ..+.+.+.
T Consensus 174 ----------~~~~~~~i~~~g~~~~~----K~~~~l~~~~~~l~-------~~~~~~~-l~i~G~~~~~--~~~~~~~~ 229 (348)
T cd03820 174 ----------SDLKSKRILAVGRLVPQ----KGFDLLIEAWAKIA-------KKHPDWK-LRIVGDGPER--EALEALIK 229 (348)
T ss_pred ----------CCCCCcEEEEEEeeccc----cCHHHHHHHHHHHH-------hcCCCeE-EEEEeCCCCH--HHHHHHHH
Confidence 24567799999998776 66799999998874 2457889 5889988775 88888889
Q ss_pred HcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC-ChhHhhhcCCeEEEEcCCCH
Q 003758 168 RLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP-IIKEYVAEGAQVIFFQKDNP 246 (797)
Q Consensus 168 elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g-Gi~EiI~Dg~nG~Lfd~~D~ 246 (797)
++++.+ +|.+.|..+++..+|+.||++|+||..| |||++++|||++|+|||+++.+ +..+++.++.+|+++++.|+
T Consensus 230 ~~~~~~-~v~~~g~~~~~~~~~~~ad~~i~ps~~e--~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~~~~~~~g~~~~~~~~ 306 (348)
T cd03820 230 ELGLED-RVILLGFTKNIEEYYAKASIFVLTSRFE--GFPMVLLEAMAFGLPVISFDCPTGPSEIIEDGVNGLLVPNGDV 306 (348)
T ss_pred HcCCCC-eEEEcCCcchHHHHHHhCCEEEeCcccc--ccCHHHHHHHHcCCCEEEecCCCchHhhhccCcceEEeCCCCH
Confidence 999987 9999999889999999999999999998 9999999999999999999976 56677777779999999999
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 003758 247 EGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYA 290 (797)
Q Consensus 247 eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~ 290 (797)
++++++|.+++++++. ++.+++++++.++++.+..++++|.
T Consensus 307 ~~~~~~i~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (348)
T cd03820 307 EALAEALLRLMEDEEL---RKRMGANARESAERFSIENIIKQWE 347 (348)
T ss_pred HHHHHHHHHHHcCHHH---HHHHHHHHHHHHHHhCHHHHHHHhc
Confidence 9999999999999987 8899999988888887777777764
No 34
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.92 E-value=3.4e-23 Score=214.56 Aligned_cols=262 Identities=21% Similarity=0.294 Sum_probs=202.1
Q ss_pred CCCCCEEEEEccchhhhhhhhhhhhhHHHHHHHHHHHHhccCEEEecCCchHHHhh---CCCCCCEEEeCCCCCCchhhh
Q 003758 5 FHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPMLYS---VLDAGNFFVIPGSPADVWAVE 81 (797)
Q Consensus 5 F~~IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~~~~~~AD~VV~ps~~l~~i~~---gld~~ki~VIPnsGVDvw~ae 81 (797)
..++|+|+.+|+......... ...............++.+|.+++.+........ +.+..++.++|+ |+|. .
T Consensus 106 ~~~~~~i~~~h~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~~i~~-~~~~---~ 180 (374)
T cd03801 106 LLGIPLVLTVHGLEFGRPGNE-LGLLLKLARALERRALRRADRIIAVSEATREELRELGGVPPEKITVIPN-GVDT---E 180 (374)
T ss_pred hcCCcEEEEeccchhhccccc-hhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHHhcCCCCCCcEEEecC-cccc---c
Confidence 357899999998554332111 0001122223344578899999988766555432 223368999998 8887 5
Q ss_pred hcccchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHH
Q 003758 82 AYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDA 161 (797)
Q Consensus 82 ~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~ 161 (797)
.+.... ...+.......+.++|+++|++... |++..+++++..+. +..++++ ++++|.++.. ..
T Consensus 181 ~~~~~~--~~~~~~~~~~~~~~~i~~~g~~~~~----k~~~~~i~~~~~~~-------~~~~~~~-l~i~G~~~~~--~~ 244 (374)
T cd03801 181 RFRPAP--RAARRRLGIPEDEPVILFVGRLVPR----KGVDLLLEALAKLR-------KEYPDVR-LVIVGDGPLR--EE 244 (374)
T ss_pred ccCccc--hHHHhhcCCcCCCeEEEEecchhhh----cCHHHHHHHHHHHh-------hhcCCeE-EEEEeCcHHH--HH
Confidence 554332 3344556667778899999998766 66699999998874 3346788 5888977654 78
Q ss_pred HHHHHHHcCCCCCeEEEecCh--hhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEE
Q 003758 162 LQEVASRLGLLEHSVRHYGFN--GDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVI 239 (797)
Q Consensus 162 Leela~elgL~d~~V~flG~~--edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~ 239 (797)
+++.+.+++..+ +|.+.|.. +++..+|+.||++|+||..+ |+|++++|||++|+|||+++.+++.+++.++.+|+
T Consensus 245 ~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~~di~i~~~~~~--~~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~g~ 321 (374)
T cd03801 245 LEALAAELGLGD-RVTFLGFVPDEDLPALYAAADVFVLPSLYE--GFGLVLLEAMAAGLPVVASDVGGIPEVVEDGETGL 321 (374)
T ss_pred HHHHHHHhCCCc-ceEEEeccChhhHHHHHHhcCEEEecchhc--cccchHHHHHHcCCcEEEeCCCChhHHhcCCcceE
Confidence 888888888887 89999954 89999999999999999997 99999999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHH
Q 003758 240 FFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC-VTRYARIL 293 (797)
Q Consensus 240 Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y~kLL 293 (797)
++++.|+++++++|.+++++++. +.++++++++.+.+.++++. ++.+.++|
T Consensus 322 ~~~~~~~~~l~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (374)
T cd03801 322 LVPPGDPEALAEAILRLLDDPEL---RRRLGEAARERVAERFSWDRVAARTEEVY 373 (374)
T ss_pred EeCCCCHHHHHHHHHHHHcChHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 99999999999999999999987 78899999977666666655 67888776
No 35
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.92 E-value=2.7e-23 Score=220.88 Aligned_cols=246 Identities=20% Similarity=0.290 Sum_probs=191.2
Q ss_pred CCCCEEEEEccchhhhhhhhhhhhhHHHHHH-HHHHHHhccCEEEecCCchHHH--hhCCCCCCEEEeCCCCCCchhhhh
Q 003758 6 HSIPLVWIIQEDSLANRLPVYVERGFQNLLS-YWKSVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEA 82 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~~rL~~y~~~g~eklls-~~~~~~~~AD~VV~ps~~l~~i--~~gld~~ki~VIPnsGVDvw~ae~ 82 (797)
.++|+|++.|.+.+..... ..+.. .....++.+|.|++.+...... ..+....++.+||+ |+|. ..
T Consensus 105 ~~~~~i~~~h~~~~~~~~~-------~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~-gi~~---~~ 173 (357)
T cd03795 105 RKKPVVVHWHSDIVKQKLL-------LKLYRPLQRRFLRRADAIVATSPNYAETSPVLRRFRDKVRVIPL-GLDP---AR 173 (357)
T ss_pred cCceEEEEEcChhhccchh-------hhhhhHHHHHHHHhcCEEEeCcHHHHHHHHHhcCCccceEEecC-CCCh---hh
Confidence 3679999999765433211 11111 1233788999999887655443 12222378899998 8997 55
Q ss_pred cccchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHH
Q 003758 83 YSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDAL 162 (797)
Q Consensus 83 F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~L 162 (797)
+........ .....+.+.++|+++|++... ||++.+++++..+. +++ ++++|.|+.. ..+
T Consensus 174 ~~~~~~~~~--~~~~~~~~~~~i~~~G~~~~~----K~~~~li~a~~~l~-----------~~~-l~i~G~g~~~--~~~ 233 (357)
T cd03795 174 YPRPDALEE--AIWRRAAGRPFFLFVGRLVYY----KGLDVLLEAAAALP-----------DAP-LVIVGEGPLE--AEL 233 (357)
T ss_pred cCCcchhhh--HhhcCCCCCcEEEEecccccc----cCHHHHHHHHHhcc-----------CcE-EEEEeCChhH--HHH
Confidence 544321111 233456677899999998766 66799999998761 688 5889998765 888
Q ss_pred HHHHHHcCCCCCeEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhc-CCeEE
Q 003758 163 QEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE-GAQVI 239 (797)
Q Consensus 163 eela~elgL~d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~D-g~nG~ 239 (797)
++.+++.++.+ +|+++| +.+++..+|+.||++++||....++||++++|||++|+|||+++.++..+.+.+ +.+|+
T Consensus 234 ~~~~~~~~~~~-~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~~~~~g~ 312 (357)
T cd03795 234 EALAAALGLLD-RVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNLHGVTGL 312 (357)
T ss_pred HHHHHhcCCcc-eEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhhCCCceE
Confidence 88888888887 999999 456799999999999999965223999999999999999999999999999986 89999
Q ss_pred EEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHH
Q 003758 240 FFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCV 286 (797)
Q Consensus 240 Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i 286 (797)
+++++|+++++++|..++++++. +++|++++++.++++++.+.+
T Consensus 313 ~~~~~d~~~~~~~i~~l~~~~~~---~~~~~~~~~~~~~~~~s~~~~ 356 (357)
T cd03795 313 VVPPGDPAALAEAIRRLLEDPEL---RERLGEAARERAEEEFTADRM 356 (357)
T ss_pred EeCCCCHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHHhcchHhh
Confidence 99999999999999999999987 899999999999999887653
No 36
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.92 E-value=2.9e-23 Score=220.96 Aligned_cols=208 Identities=20% Similarity=0.343 Sum_probs=173.0
Q ss_pred CCCCCCEEEeCCCCCCchhhhhcccc-hhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhc
Q 003758 61 VLDAGNFFVIPGSPADVWAVEAYSKS-HEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRN 139 (797)
Q Consensus 61 gld~~ki~VIPnsGVDvw~ae~F~~s-~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk 139 (797)
+++..++.+||+ |+|. ..|... .....++++++++.++++++++|++... |++..+++++..+.
T Consensus 150 ~~~~~~~~~i~n-g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~----kg~~~li~a~~~l~------- 214 (360)
T cd04951 150 AFNANKSFVVYN-GIDT---DRFRKDPARRLKIRNALGVKNDTFVILAVGRLVEA----KDYPNLLKAFAKLL------- 214 (360)
T ss_pred CCCcccEEEEcc-ccch---hhcCcchHHHHHHHHHcCcCCCCEEEEEEeeCchh----cCcHHHHHHHHHHH-------
Confidence 366789999998 9987 555433 2345678889998889999999998776 55699999998774
Q ss_pred cCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCc
Q 003758 140 SVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIP 219 (797)
Q Consensus 140 ~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~P 219 (797)
+..++++ ++++|.|+.. +.+++.++++++.+ +|.++|+.+++..+|+.||++|+||..| |||++++|||++|+|
T Consensus 215 ~~~~~~~-l~i~G~g~~~--~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~ad~~v~~s~~e--~~~~~~~Ea~a~G~P 288 (360)
T cd04951 215 SDYLDIK-LLIAGDGPLR--ATLERLIKALGLSN-RVKLLGLRDDIAAYYNAADLFVLSSAWE--GFGLVVAEAMACELP 288 (360)
T ss_pred hhCCCeE-EEEEcCCCcH--HHHHHHHHhcCCCC-cEEEecccccHHHHHHhhceEEeccccc--CCChHHHHHHHcCCC
Confidence 2347889 4889998876 88889899888887 8999999899999999999999999998 999999999999999
Q ss_pred EEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHHH
Q 003758 220 VITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC-VTRYARILE 294 (797)
Q Consensus 220 VIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y~kLLe 294 (797)
||+++.++++|++.+ +|++++++|+++++++|..+++++.. .+..++.+ +..+.+.++++. ++.|.++|+
T Consensus 289 vI~~~~~~~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~~~~~--~~~~~~~~-~~~~~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 289 VVATDAGGVREVVGD--SGLIVPISDPEALANKIDEILKMSGE--ERDIIGAR-RERIVKKFSINSIVQQWLTLYT 359 (360)
T ss_pred EEEecCCChhhEecC--CceEeCCCCHHHHHHHHHHHHhCCHH--HHHHHHHH-HHHHHHhcCHHHHHHHHHHHhh
Confidence 999999999999987 69999999999999999999965443 15556655 666666666655 779999985
No 37
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.92 E-value=2.1e-23 Score=222.60 Aligned_cols=215 Identities=20% Similarity=0.235 Sum_probs=174.4
Q ss_pred HHhccCEEEecCCchHHH-hhCCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEEEEEccccccccccc
Q 003758 41 VFSRVNVIVFPDYTLPML-YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSW 119 (797)
Q Consensus 41 ~~~~AD~VV~ps~~l~~i-~~gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~K 119 (797)
....++.+++.+...... ...+...++.+||| |+|. ..|.........+.+.+...++++|+++|++... |
T Consensus 134 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~vi~n-gvd~---~~~~~~~~~~~~~~~~~~~~~~~~i~~vGr~~~~----K 205 (358)
T cd03812 134 INRLATDYLACSEEAGKWLFGKVKNKKFKVIPN-GIDL---EKFIFNEEIRKKRRELGILEDKFVIGHVGRFSEQ----K 205 (358)
T ss_pred HHhcCCEEEEcCHHHHHHHHhCCCcccEEEEec-cCcH---HHcCCCchhhhHHHHcCCCCCCEEEEEEeccccc----c
Confidence 567788888876554333 22256678999998 9998 6554432222235667788889999999998877 5
Q ss_pred cHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEcc
Q 003758 120 DYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGS 199 (797)
Q Consensus 120 n~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS 199 (797)
|++.+++++..|.. .+++++ ++++|+|+.. +.+++.++++++.+ +|.++|..+++.++|+.||++|+||
T Consensus 206 g~~~li~a~~~l~~-------~~~~~~-l~ivG~g~~~--~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~adi~v~ps 274 (358)
T cd03812 206 NHEFLIEIFAELLK-------KNPNAK-LLLVGDGELE--EEIKKKVKELGLED-KVIFLGVRNDVPELLQAMDVFLFPS 274 (358)
T ss_pred ChHHHHHHHHHHHH-------hCCCeE-EEEEeCCchH--HHHHHHHHhcCCCC-cEEEecccCCHHHHHHhcCEEEecc
Confidence 56999999998853 357889 5899998875 88888888899987 9999999889999999999999999
Q ss_pred CCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Q 003758 200 SQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKN 279 (797)
Q Consensus 200 ~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~ 279 (797)
..| |||++++||||+|+|||+++.++.++++.++ .|++..++++++++++|.+++++++. ++.+...++.....
T Consensus 275 ~~E--~~~~~~lEAma~G~PvI~s~~~~~~~~i~~~-~~~~~~~~~~~~~a~~i~~l~~~~~~---~~~~~~~~~~~~~~ 348 (358)
T cd03812 275 LYE--GLPLVLIEAQASGLPCILSDTITKEVDLTDL-VKFLSLDESPEIWAEEILKLKSEDRR---ERSSESIKKKGLDA 348 (358)
T ss_pred ccc--CCCHHHHHHHHhCCCEEEEcCCchhhhhccC-ccEEeCCCCHHHHHHHHHHHHhCcch---hhhhhhhhhccchh
Confidence 998 9999999999999999999999999999984 57777777899999999999999997 66666665554444
Q ss_pred h
Q 003758 280 M 280 (797)
Q Consensus 280 ~ 280 (797)
.
T Consensus 349 ~ 349 (358)
T cd03812 349 D 349 (358)
T ss_pred h
Confidence 3
No 38
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.92 E-value=2e-23 Score=247.61 Aligned_cols=266 Identities=11% Similarity=0.096 Sum_probs=191.6
Q ss_pred CCCCEEEEEccchhhhhhh---hhhhh-hHHHHHHHH---HHHHhccCEEEecCCch----------------------H
Q 003758 6 HSIPLVWIIQEDSLANRLP---VYVER-GFQNLLSYW---KSVFSRVNVIVFPDYTL----------------------P 56 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~~rL~---~y~~~-g~eklls~~---~~~~~~AD~VV~ps~~l----------------------~ 56 (797)
.+||++.+.|.-...+... ++... ....+...+ ..+++.||.||+++... .
T Consensus 407 lgVP~v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly 486 (784)
T TIGR02470 407 LGVTQCTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLY 486 (784)
T ss_pred cCCCEEEECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhccccccccee
Confidence 4799999999533222110 11100 001111122 25789999999887421 0
Q ss_pred HHhhCC--CCCCEEEeCCCCCCchhhhhcccchhH------------------HHHHHHcCC--CCCCEEEEEEcccccc
Q 003758 57 MLYSVL--DAGNFFVIPGSPADVWAVEAYSKSHEK------------------YQLRKENGF--LKDEIVVVVVGSSFFY 114 (797)
Q Consensus 57 ~i~~gl--d~~ki~VIPnsGVDvw~ae~F~~s~~k------------------~slR~klGL--~~d~~vIL~VGrl~~~ 114 (797)
.+.+|+ +..++.|||+ |||. +.|.+.... ...++.+|+ ++++++|+++||+.+.
T Consensus 487 ~vvnGid~~~~Ki~VVpP-GVD~---~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~ 562 (784)
T TIGR02470 487 RVVHGIDVFDPKFNIVSP-GADE---SIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNKPIIFSMARLDRV 562 (784)
T ss_pred eeecCccCCcCCeEEECC-CcCh---hhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCCcEEEEEeCCCcc
Confidence 112355 3479999998 9998 555432111 122356775 5677899999998877
Q ss_pred ccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCC-------C---CHHHHHHHHHHcCCCCCeEEEecC---
Q 003758 115 NELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTD-------G---YNDALQEVASRLGLLEHSVRHYGF--- 181 (797)
Q Consensus 115 KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~-------~---Y~e~Leela~elgL~d~~V~flG~--- 181 (797)
||++.+++|+..+. ...++++ |+|+|.+.. . +...+.++++++++.+ +|.|+|.
T Consensus 563 ----KGid~LIeA~~~l~-------~l~~~~~-LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g-~V~flG~~~~ 629 (784)
T TIGR02470 563 ----KNLTGLVECYGRSP-------KLRELVN-LVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHG-QIRWIGAQLN 629 (784)
T ss_pred ----CCHHHHHHHHHHhH-------hhCCCeE-EEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCC-eEEEccCcCC
Confidence 66699999997652 1135678 466676532 1 2356777889999997 9999994
Q ss_pred hhhHHHHHH----HcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHH
Q 003758 182 NGDVNGVLL----MADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFI 257 (797)
Q Consensus 182 ~edl~~~L~----aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LL 257 (797)
..++..+|+ .+|++|+||.+| +||++++||||||+|||+|+.||++|+|.++++|+++++.|+++++++|..++
T Consensus 630 ~~~~~elyr~iAd~adVfV~PS~~E--pFGLvvLEAMAcGlPVVAT~~GG~~EiV~dg~tGfLVdp~D~eaLA~aL~~ll 707 (784)
T TIGR02470 630 RVRNGELYRYIADTKGIFVQPALYE--AFGLTVLEAMTCGLPTFATRFGGPLEIIQDGVSGFHIDPYHGEEAAEKIVDFF 707 (784)
T ss_pred cccHHHHHHHhhccCcEEEECCccc--CCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 345556665 347999999999 99999999999999999999999999999999999999999999999999886
Q ss_pred ----hCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHH
Q 003758 258 ----SNGKLSKFARTVASAGRLHAKNMLALDC-VTRYARIL 293 (797)
Q Consensus 258 ----edpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y~kLL 293 (797)
.|++. +++|+.+|++++.+.|+++. ++++..+.
T Consensus 708 ~kll~dp~~---~~~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 708 EKCDEDPSY---WQKISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred HHhcCCHHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 57776 89999999999877766655 67888775
No 39
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.92 E-value=6e-23 Score=214.03 Aligned_cols=257 Identities=21% Similarity=0.319 Sum_probs=203.6
Q ss_pred CCCCEEEEEccchhhhhhhhhhhhhHHHHHHHHHHHHhccCEEEecCCchHHHhhC--CCCCCEEEeCCCCCCchhhhhc
Q 003758 6 HSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPMLYSV--LDAGNFFVIPGSPADVWAVEAY 83 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~~~~~~AD~VV~ps~~l~~i~~g--ld~~ki~VIPnsGVDvw~ae~F 83 (797)
.++|+|+.+|+.......... .........+..+|.+++.+......+.. ++..++.++|+ |+|. ..+
T Consensus 116 ~~~~~i~~~h~~~~~~~~~~~------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~i~~-~~~~---~~~ 185 (377)
T cd03798 116 LGIPLVVTLHGSDVNLLPRKR------LLRALLRRALRRADAVIAVSEALADELKALGIDPEKVTVIPN-GVDT---ERF 185 (377)
T ss_pred cCCCEEEEeecchhcccCchh------hHHHHHHHHHhcCCeEEeCCHHHHHHHHHhcCCCCceEEcCC-CcCc---ccC
Confidence 357999999986544322111 12333456788999999998766655433 57889999998 8987 555
Q ss_pred ccchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHH
Q 003758 84 SKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQ 163 (797)
Q Consensus 84 ~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Le 163 (797)
........ ...+...+.++|+++|++... |+++.+++++..+. +.+++++ ++++|.++.. +.+.
T Consensus 186 ~~~~~~~~--~~~~~~~~~~~i~~~g~~~~~----k~~~~li~~~~~~~-------~~~~~~~-l~i~g~~~~~--~~~~ 249 (377)
T cd03798 186 SPADRAEA--RKLGLPEDKKVILFVGRLVPR----KGIDYLIEALARLL-------KKRPDVH-LVIVGDGPLR--EALE 249 (377)
T ss_pred CCcchHHH--HhccCCCCceEEEEeccCccc----cCHHHHHHHHHHHH-------hcCCCeE-EEEEcCCcch--HHHH
Confidence 44322222 445566788899999997776 66799999998774 2357888 5889988875 7888
Q ss_pred HHHHHcCCCCCeEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEE
Q 003758 164 EVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFF 241 (797)
Q Consensus 164 ela~elgL~d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lf 241 (797)
+.++..++.+ +|.+.| +.+++..+|+.||++++||..+ |+|.+++|||++|+|||+++.++..+++.++.+|+++
T Consensus 250 ~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~--~~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~~~g~~~ 326 (377)
T cd03798 250 ALAAELGLED-RVTFLGAVPHEEVPAYYAAADVFVLPSLRE--GFGLVLLEAMACGLPVVATDVGGIPEIITDGENGLLV 326 (377)
T ss_pred HHHHhcCCcc-eEEEeCCCCHHHHHHHHHhcCeeecchhhc--cCChHHHHHHhcCCCEEEecCCChHHHhcCCcceeEE
Confidence 8888888887 899999 4578999999999999999998 9999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHHHHH
Q 003758 242 QKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC-VTRYARILENV 296 (797)
Q Consensus 242 d~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y~kLLe~l 296 (797)
+++|+++++++|..++++++ . .+..++++.+.+.++++. ++.+.++|+++
T Consensus 327 ~~~~~~~l~~~i~~~~~~~~----~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l 377 (377)
T cd03798 327 PPGDPEALAEAILRLLADPW----L-RLGRAARRRVAERFSWENVAERLLELYREV 377 (377)
T ss_pred CCCCHHHHHHHHHHHhcCcH----H-HHhHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 99999999999999999886 2 566777777777777666 67898888753
No 40
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.92 E-value=8.7e-24 Score=238.57 Aligned_cols=265 Identities=17% Similarity=0.135 Sum_probs=191.9
Q ss_pred CCCCCEEEEEccchhhhhhhhhhhhh---------------HHHHHHHHHHHHhccCEEEecCCchHHH-hh--------
Q 003758 5 FHSIPLVWIIQEDSLANRLPVYVERG---------------FQNLLSYWKSVFSRVNVIVFPDYTLPML-YS-------- 60 (797)
Q Consensus 5 F~~IPVIW~IHE~sL~~rL~~y~~~g---------------~eklls~~~~~~~~AD~VV~ps~~l~~i-~~-------- 60 (797)
|.++|+|+++|............... .....+..+..+..+|.|++.+...... ..
T Consensus 156 ~~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~ 235 (476)
T cd03791 156 FKNIKTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLD 235 (476)
T ss_pred CCCCCEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchH
Confidence 56899999999854322111111000 0001123445788899999876543322 21
Q ss_pred ---CCCCCCEEEeCCCCCCchhhhhcccch------------------hHHHHHHHcCCC--CCCEEEEEEccccccccc
Q 003758 61 ---VLDAGNFFVIPGSPADVWAVEAYSKSH------------------EKYQLRKENGFL--KDEIVVVVVGSSFFYNEL 117 (797)
Q Consensus 61 ---gld~~ki~VIPnsGVDvw~ae~F~~s~------------------~k~slR~klGL~--~d~~vIL~VGrl~~~KGl 117 (797)
.....++.+||| |+|. +.|.+.. .+..+++++|++ ++.++|+++|++...
T Consensus 236 ~~~~~~~~ki~~I~N-Gid~---~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~--- 308 (476)
T cd03791 236 GLLRARAGKLSGILN-GIDY---DVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQ--- 308 (476)
T ss_pred HHHHhccCCeEEEeC-CCcC---cccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeecccc---
Confidence 123578999998 9997 5554421 245678899985 788899999998877
Q ss_pred cccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEec--ChhhHHHHHHHcCEE
Q 003758 118 SWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIV 195 (797)
Q Consensus 118 ~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG--~~edl~~~L~aADV~ 195 (797)
|+++.+++++..+.. .+++ ++++|.|+..+.+.++++++++ .+ +|.+.+ ..+.+..+|+.||++
T Consensus 309 -Kg~~~li~a~~~l~~---------~~~~-lvi~G~g~~~~~~~~~~~~~~~--~~-~v~~~~~~~~~~~~~~~~~aDv~ 374 (476)
T cd03791 309 -KGIDLLLEALPELLE---------LGGQ-LVILGSGDPEYEEALRELAARY--PG-RVAVLIGYDEALAHLIYAGADFF 374 (476)
T ss_pred -ccHHHHHHHHHHHHH---------cCcE-EEEEecCCHHHHHHHHHHHHhC--CC-cEEEEEeCCHHHHHHHHHhCCEE
Confidence 555999999988742 2378 5888988665556777777765 33 576654 444567899999999
Q ss_pred EEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCC------eEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHH
Q 003758 196 LYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGA------QVIFFQKDNPEGLSRAFSLFISNGKLSKFARTV 269 (797)
Q Consensus 196 V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~------nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m 269 (797)
|+||..| +||++++|||+||+|||+++.+|++|++.++. +|+++++.|+++|+++|.++++.....+.+.++
T Consensus 375 l~pS~~E--~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~ 452 (476)
T cd03791 375 LMPSRFE--PCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEAWRKL 452 (476)
T ss_pred ECCCCCC--CCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 9999998 99999999999999999999999999999988 999999999999999999998744332336666
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHH
Q 003758 270 ASAGRLHAKNMLALDCVTRYARILE 294 (797)
Q Consensus 270 ~~~aRk~ak~~~s~e~i~~Y~kLLe 294 (797)
++++.+ ..+.+...+++|.++|+
T Consensus 453 ~~~~~~--~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 453 QRNAMA--QDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHHhc--cCCChHHHHHHHHHHHh
Confidence 666543 23444555889999986
No 41
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.92 E-value=3.3e-23 Score=214.55 Aligned_cols=243 Identities=20% Similarity=0.261 Sum_probs=189.1
Q ss_pred CCCEEEEEccchhhhhhhhhhhhhHHHHHHHHHHHHhccCEEEecCCchHHH---hhCCCCCCEEEeCCCCCCchhhhhc
Q 003758 7 SIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML---YSVLDAGNFFVIPGSPADVWAVEAY 83 (797)
Q Consensus 7 ~IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~~~~~~AD~VV~ps~~l~~i---~~gld~~ki~VIPnsGVDvw~ae~F 83 (797)
++|+|+.+|+............ .......+..+|.+++.+...... ..+.+..++.+||+ |+|. ..+
T Consensus 104 ~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~~-~~~~---~~~ 173 (353)
T cd03811 104 GTKLIVWEHNSLSLELKRKLRL------LLLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPDKIEVIYN-PIDI---EEI 173 (353)
T ss_pred CCceEEEEcCcchhhhccchhH------HHHHHhhccccceEEEeccchhhhHHHhhcCCccccEEecC-CcCh---hhc
Confidence 5899999998654332211111 023455788999999887655444 22333678999998 8987 555
Q ss_pred ccchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHH
Q 003758 84 SKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQ 163 (797)
Q Consensus 84 ~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Le 163 (797)
........ ..+...+.++|+++|++... ||+..+++++..+. ..+++++ ++++|.++.. +.++
T Consensus 174 ~~~~~~~~---~~~~~~~~~~i~~~g~~~~~----k~~~~~i~~~~~l~-------~~~~~~~-l~i~G~~~~~--~~~~ 236 (353)
T cd03811 174 RALAEEPL---ELGIPPDGPVILAVGRLSPQ----KGFDTLIRAFALLR-------KEGPDAR-LVILGDGPLR--EELE 236 (353)
T ss_pred Ccccchhh---hcCCCCCceEEEEEecchhh----cChHHHHHHHHHhh-------hcCCCce-EEEEcCCccH--HHHH
Confidence 43322211 35667788999999998766 66699999998884 2357888 5889988876 8888
Q ss_pred HHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcC
Q 003758 164 EVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQK 243 (797)
Q Consensus 164 ela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~ 243 (797)
+.+..+++.+ +|.+.|..+++..+|+.||++|+||..| |+|++++|||++|+|||+++.+++.|++.++.+|+++++
T Consensus 237 ~~~~~~~~~~-~v~~~g~~~~~~~~~~~~d~~i~ps~~e--~~~~~~~Ea~~~G~PvI~~~~~~~~e~i~~~~~g~~~~~ 313 (353)
T cd03811 237 ALAKELGLAD-RVHFLGFQSNPYPYLKAADLFVLSSRYE--GFPNVLLEAMALGTPVVATDCPGPREILEDGENGLLVPV 313 (353)
T ss_pred HHHHhcCCCc-cEEEecccCCHHHHHHhCCEEEeCcccC--CCCcHHHHHHHhCCCEEEcCCCChHHHhcCCCceEEECC
Confidence 8999999887 9999998889999999999999999998 999999999999999999999999999999999999999
Q ss_pred CCHHHH---HHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcH
Q 003758 244 DNPEGL---SRAFSLFISNGKLSKFARTVASAGRLHAKNMLA 282 (797)
Q Consensus 244 ~D~eeL---AeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s 282 (797)
+|++++ ++++..+..+++. +.+++.++++.+.+.|+
T Consensus 314 ~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 314 GDEAALAAAALALLDLLLDPEL---RERLAAAARERVAREYS 352 (353)
T ss_pred CCHHHHHHHHHHHHhccCChHH---HHHHHHHHHHHHHHHhc
Confidence 999999 6666666667665 77788877777666543
No 42
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.91 E-value=1.7e-23 Score=227.23 Aligned_cols=248 Identities=15% Similarity=0.186 Sum_probs=187.8
Q ss_pred CCEEEEEccchhhhhhhhhhhhhHHHHHHHHHHHHhccCEEEecCCchHHH-hhCCC-CCCEEEeCCCCCCchhhhhccc
Q 003758 8 IPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML-YSVLD-AGNFFVIPGSPADVWAVEAYSK 85 (797)
Q Consensus 8 IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~~~~~~AD~VV~ps~~l~~i-~~gld-~~ki~VIPnsGVDvw~ae~F~~ 85 (797)
.++|.++|........... ...+..+.......+.++|.|++++...... ...++ ..++.+||+ |++. ..+..
T Consensus 122 ~~~i~~~h~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~l~~~~~~~~~v~~ip~-g~~~---~~~~~ 196 (372)
T cd04949 122 AKVVVVLHSNHVSDNNDPV-HSLINNFYEYVFENLDKVDGVIVATEQQKQDLQKQFGNYNPIYTIPV-GSID---PLKLP 196 (372)
T ss_pred ceEEEEEChHHhCCccccc-ccccchhhHHHHhChhhCCEEEEccHHHHHHHHHHhCCCCceEEEcc-cccC---hhhcc
Confidence 4567777764332221111 0111222223333567899999887554332 22222 234889998 8886 33322
Q ss_pred chhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHH
Q 003758 86 SHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEV 165 (797)
Q Consensus 86 s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leel 165 (797)
.. .....++.|+++|++... |+++.+++++..+.. ..++++ ++|+|.++.. ..+...
T Consensus 197 ~~---------~~~~~~~~i~~vgrl~~~----K~~~~li~a~~~l~~-------~~~~~~-l~i~G~g~~~--~~~~~~ 253 (372)
T cd04949 197 AQ---------FKQRKPHKIITVARLAPE----KQLDQLIKAFAKVVK-------QVPDAT-LDIYGYGDEE--EKLKEL 253 (372)
T ss_pred cc---------hhhcCCCeEEEEEccCcc----cCHHHHHHHHHHHHH-------hCCCcE-EEEEEeCchH--HHHHHH
Confidence 11 112345689999998776 666999999988853 457888 5889998875 788888
Q ss_pred HHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC-ChhHhhhcCCeEEEEcCC
Q 003758 166 ASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP-IIKEYVAEGAQVIFFQKD 244 (797)
Q Consensus 166 a~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g-Gi~EiI~Dg~nG~Lfd~~ 244 (797)
+.++++.+ +|.+.|..+++..+|+.||++|+||..| |||++++|||++|+|||+++.+ |.++++.++.+|++++++
T Consensus 254 ~~~~~~~~-~v~~~g~~~~~~~~~~~ad~~v~~S~~E--g~~~~~lEAma~G~PvI~~~~~~g~~~~v~~~~~G~lv~~~ 330 (372)
T cd04949 254 IEELGLED-YVFLKGYTRDLDEVYQKAQLSLLTSQSE--GFGLSLMEALSHGLPVISYDVNYGPSEIIEDGENGYLVPKG 330 (372)
T ss_pred HHHcCCcc-eEEEcCCCCCHHHHHhhhhEEEeccccc--ccChHHHHHHhCCCCEEEecCCCCcHHHcccCCCceEeCCC
Confidence 88999988 9999998889999999999999999988 9999999999999999999988 899999999999999999
Q ss_pred CHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHH
Q 003758 245 NPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRY 289 (797)
Q Consensus 245 D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y 289 (797)
|+++|+++|..++++++. +..+++++++.++++.+..++++|
T Consensus 331 d~~~la~~i~~ll~~~~~---~~~~~~~a~~~~~~~s~~~~~~~w 372 (372)
T cd04949 331 DIEALAEAIIELLNDPKL---LQKFSEAAYENAERYSEENVWEKW 372 (372)
T ss_pred cHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHHHhhHHHHHhcC
Confidence 999999999999999977 899999999998777666666543
No 43
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.91 E-value=2.3e-23 Score=220.22 Aligned_cols=259 Identities=17% Similarity=0.180 Sum_probs=194.8
Q ss_pred CCCCCEEEEEccchhhhhhhhhhhhhHHHHHHHHHHHHhccCEEEecCCchHHH---hhCCCCCCEEEeCCCCCCchhhh
Q 003758 5 FHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML---YSVLDAGNFFVIPGSPADVWAVE 81 (797)
Q Consensus 5 F~~IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~~~~~~AD~VV~ps~~l~~i---~~gld~~ki~VIPnsGVDvw~ae 81 (797)
+.++|+|.++|+.................+.......+..+|.+++.+...... ..+.+..++.++|+ |+|. .
T Consensus 101 ~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~vi~~-~~~~---~ 176 (365)
T cd03809 101 LRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEATKRDLLRYLGVPPDKIVVIPL-GVDP---R 176 (365)
T ss_pred CCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHHHHHHHHHhCcCHHHEEeecc-ccCc---c
Confidence 468999999998543222111111112233334556889999999987654443 23456778999998 8987 5
Q ss_pred hcccchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHH
Q 003758 82 AYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDA 161 (797)
Q Consensus 82 ~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~ 161 (797)
.+....... +.......++++|+++|++... ||++.+++++..+.. ..++++ ++++|.+...+ ..
T Consensus 177 ~~~~~~~~~--~~~~~~~~~~~~i~~~G~~~~~----K~~~~~l~~~~~~~~-------~~~~~~-l~i~G~~~~~~-~~ 241 (365)
T cd03809 177 FRPPPAEAE--VLRALYLLPRPYFLYVGTIEPR----KNLERLLEAFARLPA-------KGPDPK-LVIVGKRGWLN-EE 241 (365)
T ss_pred ccCCCchHH--HHHHhcCCCCCeEEEeCCCccc----cCHHHHHHHHHHHHH-------hcCCCC-EEEecCCcccc-HH
Confidence 554432222 4445556678899999998776 666999999988843 334678 47888766542 33
Q ss_pred HHHHHHHcCCCCCeEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEE
Q 003758 162 LQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVI 239 (797)
Q Consensus 162 Leela~elgL~d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~ 239 (797)
.....+..+..+ +|+++| +.+++..+|+.||++++||..| ++|++++|||++|+|||+++.+++.|++.+ +|+
T Consensus 242 ~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e--~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~--~~~ 316 (365)
T cd03809 242 LLARLRELGLGD-RVRFLGYVSDEELAALYRGARAFVFPSLYE--GFGLPVLEAMACGTPVIASNISSLPEVAGD--AAL 316 (365)
T ss_pred HHHHHHHcCCCC-eEEECCCCChhHHHHHHhhhhhhcccchhc--cCCCCHHHHhcCCCcEEecCCCCccceecC--cee
Confidence 333335677877 899999 4578999999999999999998 999999999999999999999999999865 489
Q ss_pred EEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 003758 240 FFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYA 290 (797)
Q Consensus 240 Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~ 290 (797)
+++++|+++++++|.+++.|++. +..+++++++.++++.+...++.|.
T Consensus 317 ~~~~~~~~~~~~~i~~l~~~~~~---~~~~~~~~~~~~~~~sw~~~~~~~~ 364 (365)
T cd03809 317 YFDPLDPEALAAAIERLLEDPAL---REELRERGLARAKRFSWEKTARRTL 364 (365)
T ss_pred eeCCCCHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 99999999999999999999987 8899999998888877777777664
No 44
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.91 E-value=6.6e-23 Score=217.79 Aligned_cols=238 Identities=20% Similarity=0.292 Sum_probs=193.3
Q ss_pred CCCEEEEEccchhhhhhhhhhhhhHHHHHHHHHHHHhccCEEEecCCchHHHhh---CCCCCCEEEeCCCCCCchhhhhc
Q 003758 7 SIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPMLYS---VLDAGNFFVIPGSPADVWAVEAY 83 (797)
Q Consensus 7 ~IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~~~~~~AD~VV~ps~~l~~i~~---gld~~ki~VIPnsGVDvw~ae~F 83 (797)
++|+++++|...+...... ......++.+|.|++++......+. +.+..++.++|+ |+|. ..|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~vi~~-~~d~---~~~ 168 (355)
T cd03799 103 GIPYSFTAHGKDIFRSPDA----------IDLDEKLARADFVVAISEYNRQQLIRLLGCDPDKIHVVHC-GVDL---ERF 168 (355)
T ss_pred CCCEEEEEecccccccCch----------HHHHHHHhhCCEEEECCHHHHHHHHHhcCCCcccEEEEeC-CcCH---HHc
Confidence 5888988886432221100 2345577889999998866655432 577889999998 8987 544
Q ss_pred ccchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHH
Q 003758 84 SKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQ 163 (797)
Q Consensus 84 ~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Le 163 (797)
.... .....+++.|+++|++... ||++.+++++..+. +.+++++ ++++|.++.. +.++
T Consensus 169 ~~~~--------~~~~~~~~~i~~~g~~~~~----k~~~~l~~~~~~l~-------~~~~~~~-l~i~G~~~~~--~~~~ 226 (355)
T cd03799 169 PPRP--------PPPPGEPLRILSVGRLVEK----KGLDYLLEALALLK-------DRGIDFR-LDIVGDGPLR--DELE 226 (355)
T ss_pred CCcc--------ccccCCCeEEEEEeeeccc----cCHHHHHHHHHHHh-------hcCCCeE-EEEEECCccH--HHHH
Confidence 3321 1234567789999998766 66799999998774 3357889 5889998876 8889
Q ss_pred HHHHHcCCCCCeEEEecC--hhhHHHHHHHcCEEEEccCC------CCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcC
Q 003758 164 EVASRLGLLEHSVRHYGF--NGDVNGVLLMADIVLYGSSQ------VEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEG 235 (797)
Q Consensus 164 ela~elgL~d~~V~flG~--~edl~~~L~aADV~V~PS~~------Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg 235 (797)
+.++++++.+ +|++.|. .+++..+|+.||++|+||.. | |||++++|||++|+|||+++.++.++++.++
T Consensus 227 ~~~~~~~~~~-~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e--~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~~~ 303 (355)
T cd03799 227 ALIAELGLED-RVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDRE--GLPVVLMEAMAMGLPVISTDVSGIPELVEDG 303 (355)
T ss_pred HHHHHcCCCC-eEEECCcCChHHHHHHHHhCCEEEecceecCCCCcc--CccHHHHHHHHcCCCEEecCCCCcchhhhCC
Confidence 9999988887 8999994 47899999999999999998 8 9999999999999999999999999999999
Q ss_pred CeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHH
Q 003758 236 AQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCV 286 (797)
Q Consensus 236 ~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i 286 (797)
.+|++++++|+++++++|..++++++. +..+++++++.+++.++++..
T Consensus 304 ~~g~~~~~~~~~~l~~~i~~~~~~~~~---~~~~~~~a~~~~~~~~s~~~~ 351 (355)
T cd03799 304 ETGLLVPPGDPEALADAIERLLDDPEL---RREMGEAGRARVEEEFDIRKQ 351 (355)
T ss_pred CceEEeCCCCHHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999999999999999987 889999999999888777663
No 45
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.91 E-value=2.5e-23 Score=232.91 Aligned_cols=210 Identities=13% Similarity=0.169 Sum_probs=152.1
Q ss_pred HHhccCEEEecCCchHHHh-hCCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEEEEEccccccccccc
Q 003758 41 VFSRVNVIVFPDYTLPMLY-SVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSW 119 (797)
Q Consensus 41 ~~~~AD~VV~ps~~l~~i~-~gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~K 119 (797)
..+.++.+|+++..+.... ..+...++.|||| |||. +.+......... ..+.++++|+++|+....++ |
T Consensus 187 ~~~~~~~iV~~S~~l~~~~~~~~~~~~i~vI~N-Gid~---~~~~~~~~~~~~----~~~~~~~~il~v~~~~~~~~--K 256 (405)
T PRK10125 187 MLALGCQFISPSQHVADAFNSLYGPGRCRIINN-GIDM---ATEAILAELPPV----RETQGKPKIAVVAHDLRYDG--K 256 (405)
T ss_pred HhhcCcEEEEcCHHHHHHHHHHcCCCCEEEeCC-CcCc---cccccccccccc----ccCCCCCEEEEEEeccccCC--c
Confidence 4455678888876655443 3334578999998 9996 221111001111 12346678999998544332 7
Q ss_pred cHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEec---ChhhHHHHHHHcCEEE
Q 003758 120 DYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG---FNGDVNGVLLMADIVL 196 (797)
Q Consensus 120 n~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG---~~edl~~~L~aADV~V 196 (797)
++..+++|+..+ .++++ |+++|.++.. . .. .|.++| ...++..+|++||++|
T Consensus 257 g~~~li~A~~~l----------~~~~~-L~ivG~g~~~--~-----------~~-~v~~~g~~~~~~~l~~~y~~aDvfV 311 (405)
T PRK10125 257 TDQQLVREMMAL----------GDKIE-LHTFGKFSPF--T-----------AG-NVVNHGFETDKRKLMSALNQMDALV 311 (405)
T ss_pred cHHHHHHHHHhC----------CCCeE-EEEEcCCCcc--c-----------cc-ceEEecCcCCHHHHHHHHHhCCEEE
Confidence 789999999765 25688 5889987542 1 12 577777 4567999999999999
Q ss_pred EccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHH----HHHH
Q 003758 197 YGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFART----VASA 272 (797)
Q Consensus 197 ~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~----m~~~ 272 (797)
+||..| |||++++||||||+|||+|+.||++|++.++ +|++++++|+++|++.+ ++.. +.+ +..+
T Consensus 312 ~pS~~E--gfp~vilEAmA~G~PVVat~~gG~~Eiv~~~-~G~lv~~~d~~~La~~~-----~~~~---~~~~~~~~~~~ 380 (405)
T PRK10125 312 FSSRVD--NYPLILCEALSIGVPVIATHSDAAREVLQKS-GGKTVSEEEVLQLAQLS-----KPEI---AQAVFGTTLAE 380 (405)
T ss_pred ECCccc--cCcCHHHHHHHcCCCEEEeCCCChHHhEeCC-cEEEECCCCHHHHHhcc-----CHHH---HHHhhhhHHHH
Confidence 999988 9999999999999999999999999999875 89999999999999854 3332 222 2345
Q ss_pred HHHHHHHhcHHHH-HHHHHHHHHHH
Q 003758 273 GRLHAKNMLALDC-VTRYARILENV 296 (797)
Q Consensus 273 aRk~ak~~~s~e~-i~~Y~kLLe~l 296 (797)
+++.+.+.|+.+. +++|.++|+++
T Consensus 381 ~r~~~~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 381 FSQRSRAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 7888777666655 78999999863
No 46
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.91 E-value=1.3e-22 Score=216.28 Aligned_cols=225 Identities=20% Similarity=0.234 Sum_probs=178.1
Q ss_pred hccCEEEecCCchHHHh-h--CCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEEEEEccccccccccc
Q 003758 43 SRVNVIVFPDYTLPMLY-S--VLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSW 119 (797)
Q Consensus 43 ~~AD~VV~ps~~l~~i~-~--gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~K 119 (797)
..++.+++++....... . .++..++.++|+ |+|. ..|.+. .+...+..++++.+.++++++|+.... ..|
T Consensus 134 ~~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~n-gi~~---~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~K 206 (365)
T cd03825 134 DLNLTIVAPSRWLADCARSSSLFKGIPIEVIPN-GIDT---TIFRPR-DKREARKRLGLPADKKIILFGAVGGTD--PRK 206 (365)
T ss_pred cCCcEEEehhHHHHHHHHhccccCCCceEEeCC-CCcc---cccCCC-cHHHHHHHhCCCCCCeEEEEEecCCCc--ccc
Confidence 34556667665544442 2 266789999998 9997 555433 345667888888888887777665432 137
Q ss_pred cHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecC---hhhHHHHHHHcCEEE
Q 003758 120 DYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGF---NGDVNGVLLMADIVL 196 (797)
Q Consensus 120 n~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~---~edl~~~L~aADV~V 196 (797)
++..+++++..+... ..++++ ++++|+++.. .. .++.. +|.++|. .+++..+|+.||+++
T Consensus 207 ~~~~ll~a~~~l~~~------~~~~~~-~~i~G~~~~~--~~-------~~~~~-~v~~~g~~~~~~~~~~~~~~ad~~l 269 (365)
T cd03825 207 GFDELIEALKRLAER------WKDDIE-LVVFGASDPE--IP-------PDLPF-PVHYLGSLNDDESLALIYSAADVFV 269 (365)
T ss_pred CHHHHHHHHHHhhhc------cCCCeE-EEEeCCCchh--hh-------ccCCC-ceEecCCcCCHHHHHHHHHhCCEEE
Confidence 889999999877421 147888 5888987653 11 14455 7999994 457999999999999
Q ss_pred EccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Q 003758 197 YGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLH 276 (797)
Q Consensus 197 ~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ 276 (797)
+||..| |||++++|||++|+|||+++.+++.+++.++.+|++++..|+++++++|.+++++++. +.++++++++.
T Consensus 270 ~ps~~e--~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~~~~~~~ 344 (365)
T cd03825 270 VPSLQE--NFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADPDE---REELGEAAREL 344 (365)
T ss_pred eccccc--cccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCHHH---HHHHHHHHHHH
Confidence 999998 9999999999999999999999999999999999999999999999999999999886 78999999999
Q ss_pred HHHhcHHHH-HHHHHHHHHHH
Q 003758 277 AKNMLALDC-VTRYARILENV 296 (797)
Q Consensus 277 ak~~~s~e~-i~~Y~kLLe~l 296 (797)
+.+.++++. ++.|.++|+++
T Consensus 345 ~~~~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 345 AENEFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred HHHhcCHHHHHHHHHHHHhhC
Confidence 987777665 77999999863
No 47
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.91 E-value=9.9e-23 Score=217.49 Aligned_cols=249 Identities=14% Similarity=0.190 Sum_probs=184.4
Q ss_pred CCCEEEEEccchhhhhhhhhhhhhHHHHHHH-HHHHHhccCEEEecCCchHHHh-hCCCCCCEEEeCCCCCCchhhhhcc
Q 003758 7 SIPLVWIIQEDSLANRLPVYVERGFQNLLSY-WKSVFSRVNVIVFPDYTLPMLY-SVLDAGNFFVIPGSPADVWAVEAYS 84 (797)
Q Consensus 7 ~IPVIW~IHE~sL~~rL~~y~~~g~eklls~-~~~~~~~AD~VV~ps~~l~~i~-~gld~~ki~VIPnsGVDvw~ae~F~ 84 (797)
++|+|+++|+....... +.. ....+... ....+..+|.|++.+....... ...+... .+||| |+|. ..+.
T Consensus 108 ~~~~v~~~h~~~~~~~~--~~~-~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~-~~i~n-gv~~---~~~~ 179 (363)
T cd04955 108 GKKVVVNMDGLEWKRAK--WGR-PAKRYLKFGEKLAVKFADRLIADSPGIKEYLKEKYGRDS-TYIPY-GADH---VVSS 179 (363)
T ss_pred CCCEEEEccCcceeecc--ccc-chhHHHHHHHHHHHhhccEEEeCCHHHHHHHHHhcCCCC-eeeCC-CcCh---hhcc
Confidence 68999999974332111 111 01122221 1235788999999887665553 3333333 88998 9997 4443
Q ss_pred cchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHH
Q 003758 85 KSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQE 164 (797)
Q Consensus 85 ~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Lee 164 (797)
. ....+...+++++. .|+++|++... ||++.+++|+..+. .+++ ++++|.++.. ..+.+
T Consensus 180 ~---~~~~~~~~~~~~~~-~i~~~G~~~~~----Kg~~~li~a~~~l~----------~~~~-l~ivG~~~~~--~~~~~ 238 (363)
T cd04955 180 E---EDEILKKYGLEPGR-YYLLVGRIVPE----NNIDDLIEAFSKSN----------SGKK-LVIVGNADHN--TPYGK 238 (363)
T ss_pred h---hhhhHHhcCCCCCc-EEEEEeccccc----CCHHHHHHHHHhhc----------cCce-EEEEcCCCCc--chHHH
Confidence 2 12344556665554 57899998876 66699999997662 2688 5889988654 55555
Q ss_pred HHH-HcCCCCCeEEEec--ChhhHHHHHHHcCEEEEccCC-CCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEE
Q 003758 165 VAS-RLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQ-VEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIF 240 (797)
Q Consensus 165 la~-elgL~d~~V~flG--~~edl~~~L~aADV~V~PS~~-Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~L 240 (797)
.+. .++..+ +|+++| +.+++..+|..||++++||.. | |||++++|||+||+|||+++.++.+|++.+ +|++
T Consensus 239 ~~~~~~~~~~-~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e--~~~~~~~EAma~G~PvI~s~~~~~~e~~~~--~g~~ 313 (363)
T cd04955 239 LLKEKAAADP-RIIFVGPIYDQELLELLRYAALFYLHGHSVG--GTNPSLLEAMAYGCPVLASDNPFNREVLGD--KAIY 313 (363)
T ss_pred HHHHHhCCCC-cEEEccccChHHHHHHHHhCCEEEeCCccCC--CCChHHHHHHHcCCCEEEecCCccceeecC--CeeE
Confidence 444 667776 899999 567799999999999999998 7 999999999999999999999999999977 6999
Q ss_pred EcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHHH
Q 003758 241 FQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC-VTRYARILE 294 (797)
Q Consensus 241 fd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y~kLLe 294 (797)
++++|. ++++|..++++++. +.++++++++.+.+.|+++. +++|.++|+
T Consensus 314 ~~~~~~--l~~~i~~l~~~~~~---~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 314 FKVGDD--LASLLEELEADPEE---VSAMAKAARERIREKYTWEKIADQYEELYK 363 (363)
T ss_pred ecCchH--HHHHHHHHHhCHHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 987776 99999999999976 78899999999988666655 779998874
No 48
>PLN00142 sucrose synthase
Probab=99.91 E-value=4.5e-23 Score=244.76 Aligned_cols=231 Identities=13% Similarity=0.141 Sum_probs=174.7
Q ss_pred HHhccCEEEecCCch----------------------HHHhhCCC--CCCEEEeCCCCCCchhhhhcccchh-H------
Q 003758 41 VFSRVNVIVFPDYTL----------------------PMLYSVLD--AGNFFVIPGSPADVWAVEAYSKSHE-K------ 89 (797)
Q Consensus 41 ~~~~AD~VV~ps~~l----------------------~~i~~gld--~~ki~VIPnsGVDvw~ae~F~~s~~-k------ 89 (797)
+++.||.||+.+... ..+.+|++ ..++.|||+ |+|. ..|.+... .
T Consensus 472 a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVpp-GvD~---~~F~P~~~~~~rl~~l 547 (815)
T PLN00142 472 AMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSP-GADM---SIYFPYTEKQKRLTSL 547 (815)
T ss_pred HHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECC-CCCh---hhcCCCChHHhhHHhh
Confidence 778889888665221 11123553 458999998 9998 65643211 1
Q ss_pred -----------HHHHHHcCC--CCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCC
Q 003758 90 -----------YQLRKENGF--LKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTD 156 (797)
Q Consensus 90 -----------~slR~klGL--~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~ 156 (797)
...++.+|+ +.++++|+++|++... ||++.+++|+..+. +..++++ |+|+|.+.+
T Consensus 548 ~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~----KGid~LIeA~a~l~-------~l~~~~~-LVIVGgg~d 615 (815)
T PLN00142 548 HPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRV----KNLTGLVEWYGKNK-------RLRELVN-LVVVGGFID 615 (815)
T ss_pred cccchhhcCChHHHHHHhCCccCCCCcEEEEEecCccc----CCHHHHHHHHHHHH-------HhCCCcE-EEEEECCcc
Confidence 112345675 4556799999998887 66699999998763 2235788 477776521
Q ss_pred --C--C------HHHHHHHHHHcCCCCCeEEEecCh------hhHHHHHH-HcCEEEEccCCCCCCccHHHHHHHHhCCc
Q 003758 157 --G--Y------NDALQEVASRLGLLEHSVRHYGFN------GDVNGVLL-MADIVLYGSSQVEQGFPSLIVRAMTFGIP 219 (797)
Q Consensus 157 --~--Y------~e~Leela~elgL~d~~V~flG~~------edl~~~L~-aADV~V~PS~~Ee~GFPlvLLEAMA~G~P 219 (797)
. . ...+.++++++++.+ +|.|+|.. +++..+++ ++|++|+||.+| |||++++||||||+|
T Consensus 616 ~~~s~d~ee~~el~~L~~La~~lgL~~-~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~E--gFGLvvLEAMA~GlP 692 (815)
T PLN00142 616 PSKSKDREEIAEIKKMHSLIEKYNLKG-QFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYE--AFGLTVVEAMTCGLP 692 (815)
T ss_pred ccccccHHHHHHHHHHHHHHHHcCCCC-cEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCccc--CCCHHHHHHHHcCCC
Confidence 0 0 134667888999987 99999832 35666666 479999999999 999999999999999
Q ss_pred EEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHH
Q 003758 220 VITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFI----SNGKLSKFARTVASAGRLHAKNMLALDC-VTRYARIL 293 (797)
Q Consensus 220 VIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LL----edpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y~kLL 293 (797)
||+|+.||++|+|.++++|++++++|+++++++|..++ .|++. +.+|+++|++.+.+.|+++. ++++.++.
T Consensus 693 VVATdvGG~~EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~l---r~~mg~~Ar~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 693 TFATCQGGPAEIIVDGVSGFHIDPYHGDEAANKIADFFEKCKEDPSY---WNKISDAGLQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred EEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998754 67876 89999999999977666655 66887765
No 49
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.91 E-value=2e-22 Score=209.73 Aligned_cols=249 Identities=19% Similarity=0.271 Sum_probs=184.8
Q ss_pred CCCCEEEEEccchhhhhhhhhhhhhHHHHHH-HHHHHHhccCEEEecCCchHHHh--hCC-C-CCCEEEeCCCCCCchhh
Q 003758 6 HSIPLVWIIQEDSLANRLPVYVERGFQNLLS-YWKSVFSRVNVIVFPDYTLPMLY--SVL-D-AGNFFVIPGSPADVWAV 80 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~~rL~~y~~~g~eklls-~~~~~~~~AD~VV~ps~~l~~i~--~gl-d-~~ki~VIPnsGVDvw~a 80 (797)
...++|+.+|+........... ..+.. ..+..+..+|.+++.+......+ .+. + ..++.++|+ |+|.
T Consensus 103 ~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--- 174 (359)
T cd03808 103 GVPKVIYTVHGLGFVFTSGGLK----RRLYLLLERLALRFTDKVIFQNEDDRDLALKLGIIKKKKTVLIPGS-GVDL--- 174 (359)
T ss_pred CCCCEEEEecCcchhhccchhH----HHHHHHHHHHHHhhccEEEEcCHHHHHHHHHhcCCCcCceEEecCC-CCCh---
Confidence 3457778888644332221111 11122 23446778899999876554442 222 2 334555554 8887
Q ss_pred hhcccchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHH
Q 003758 81 EAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYND 160 (797)
Q Consensus 81 e~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e 160 (797)
..+...... .+.++++|+++|++... |+.+.+++++..+. +.+++++ ++++|.++.. .
T Consensus 175 ~~~~~~~~~--------~~~~~~~i~~~G~~~~~----k~~~~li~~~~~l~-------~~~~~~~-l~i~G~~~~~--~ 232 (359)
T cd03808 175 DRFSPSPEP--------IPEDDPVFLFVARLLKD----KGIDELLEAARILK-------AKGPNVR-LLLVGDGDEE--N 232 (359)
T ss_pred hhcCccccc--------cCCCCcEEEEEeccccc----cCHHHHHHHHHHHH-------hcCCCeE-EEEEcCCCcc--h
Confidence 444332111 24567899999998776 56699999998774 2357899 5888988765 3
Q ss_pred HHHHH-HHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEE
Q 003758 161 ALQEV-ASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVI 239 (797)
Q Consensus 161 ~Leel-a~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~ 239 (797)
..... +...+..+ +|++.|..+++..+|+.||++|+||..| |||++++|||++|+|||+++.++..+++.++.+|+
T Consensus 233 ~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~adi~i~ps~~e--~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~~~~g~ 309 (359)
T cd03808 233 PAAILEIEKLGLEG-RVEFLGFRDDVPELLAAADVFVLPSYRE--GLPRVLLEAMAMGRPVIATDVPGCREAVIDGVNGF 309 (359)
T ss_pred hhHHHHHHhcCCcc-eEEEeeccccHHHHHHhccEEEecCccc--CcchHHHHHHHcCCCEEEecCCCchhhhhcCcceE
Confidence 33332 56667766 8999999889999999999999999997 99999999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHH
Q 003758 240 FFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC-VTRYA 290 (797)
Q Consensus 240 Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y~ 290 (797)
+++++|+++++++|..++.+++. +..+++++++.+.+.++.+. ++.|.
T Consensus 310 ~~~~~~~~~~~~~i~~l~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 310 LVPPGDAEALADAIERLIEDPEL---RARMGQAARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred EECCCCHHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 99999999999999999999987 88999999999777777666 44553
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.91 E-value=1.7e-22 Score=212.48 Aligned_cols=259 Identities=18% Similarity=0.201 Sum_probs=196.4
Q ss_pred CCCCEEEEEccchhhhhh---hhhhhhhHHHHHHH-HHHHHhccCEEEecCCchHHHh--hCCCCCCEEEeCCCCCCchh
Q 003758 6 HSIPLVWIIQEDSLANRL---PVYVERGFQNLLSY-WKSVFSRVNVIVFPDYTLPMLY--SVLDAGNFFVIPGSPADVWA 79 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~~rL---~~y~~~g~eklls~-~~~~~~~AD~VV~ps~~l~~i~--~gld~~ki~VIPnsGVDvw~ 79 (797)
.++|+|+.+|+....... .........++... .+..++.+|.|++.+......+ .+++..++.++|+ |++.
T Consensus 123 ~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~-~~~~-- 199 (394)
T cd03794 123 KGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLERLIYRRADAIVVISPGMREYLVRRGVPPEKISVIPN-GVDL-- 199 (394)
T ss_pred cCCCEEEEehhhcchhHHHccCccccchHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCCcCceEEcCC-CCCH--
Confidence 368999999973211100 00000000012222 2347889999999887666554 5778889999998 8987
Q ss_pred hhhcccchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCH
Q 003758 80 VEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYN 159 (797)
Q Consensus 80 ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~ 159 (797)
..+........ +.......+.++|+++|++... |+.+.+++++..+.. . ++++ ++++|.++..
T Consensus 200 -~~~~~~~~~~~-~~~~~~~~~~~~i~~~G~~~~~----k~~~~l~~~~~~l~~-------~-~~~~-l~i~G~~~~~-- 262 (394)
T cd03794 200 -ELFKPPPADES-LRKELGLDDKFVVLYAGNIGRA----QGLDTLLEAAALLKD-------R-PDIR-FLIVGDGPEK-- 262 (394)
T ss_pred -HHcCCccchhh-hhhccCCCCcEEEEEecCcccc----cCHHHHHHHHHHHhh-------c-CCeE-EEEeCCcccH--
Confidence 54443322222 4455566788899999998776 666999999987742 2 6788 5889998875
Q ss_pred HHHHHHHHHcCCCCCeEEEec--ChhhHHHHHHHcCEEEEccCCCC---CCccHHHHHHHHhCCcEEEcCCCChhHhhhc
Q 003758 160 DALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVE---QGFPSLIVRAMTFGIPVITPDFPIIKEYVAE 234 (797)
Q Consensus 160 e~Leela~elgL~d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee---~GFPlvLLEAMA~G~PVIasd~gGi~EiI~D 234 (797)
+.+.+.+...+++ +|.++| +.+++..+|+.||++|+||..++ .++|++++|||++|+|||+++.++..+++.+
T Consensus 263 ~~~~~~~~~~~~~--~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~ 340 (394)
T cd03794 263 EELKELAKALGLD--NVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEE 340 (394)
T ss_pred HHHHHHHHHcCCC--cEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhhcc
Confidence 7787777777775 599999 45789999999999999999882 2459999999999999999999999999999
Q ss_pred CCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHH
Q 003758 235 GAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC-VTRY 289 (797)
Q Consensus 235 g~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y 289 (797)
+.+|++++++|+++++++|..++.+++. +.++++++++++.+.++++. ++.|
T Consensus 341 ~~~g~~~~~~~~~~l~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 341 AGAGLVVPPGDPEALAAAILELLDDPEE---RAEMGENGRRYVEEKFSREKLAERL 393 (394)
T ss_pred CCcceEeCCCCHHHHHHHHHHHHhChHH---HHHHHHHHHHHHHHhhcHHHHHHhc
Confidence 8899999999999999999999999987 89999999999996666655 5454
No 51
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.91 E-value=1.3e-22 Score=226.55 Aligned_cols=243 Identities=17% Similarity=0.125 Sum_probs=186.3
Q ss_pred CEEEEEccchhhhhhhhhhhhhHHHHHHHHHHHHhccCEEEecCCchHHH-h--hCCCCCCEEEeCCCCCCchhhhhccc
Q 003758 9 PLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML-Y--SVLDAGNFFVIPGSPADVWAVEAYSK 85 (797)
Q Consensus 9 PVIW~IHE~sL~~rL~~y~~~g~eklls~~~~~~~~AD~VV~ps~~l~~i-~--~gld~~ki~VIPnsGVDvw~ae~F~~ 85 (797)
++|.+.|...+...... ..........++.+|.|++.+...... . .+...+++.++|+ |++. ..+..
T Consensus 154 ~~i~~~Hg~d~~~~~~~------~~~~~~~~~~~~~~d~ii~~S~~~~~~l~~~~~~~~~ki~vi~~-gv~~---~~~~~ 223 (407)
T cd04946 154 RVISRAHGYDLYEDRYP------SGYIPLRRYLLSSLDAVFPCSEQGRNYLQKRYPAYKEKIKVSYL-GVSD---PGIIS 223 (407)
T ss_pred eEEEEeccchhhhhhcc------ccchHHHHHHHhcCCEEEECCHHHHHHHHHHCCCccccEEEEEC-Cccc---ccccC
Confidence 48888886443321110 111122334578999999987655443 2 2455678899997 8886 33321
Q ss_pred chhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHH
Q 003758 86 SHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEV 165 (797)
Q Consensus 86 s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leel 165 (797)
. ....+.+.|+++|++... |+++.+++|+..+....+ ..+++ ++++|.|+.. +.++++
T Consensus 224 ~----------~~~~~~~~il~~Grl~~~----Kg~~~li~a~~~l~~~~p-----~~~l~-~~iiG~g~~~--~~l~~~ 281 (407)
T cd04946 224 K----------PSKDDTLRIVSCSYLVPV----KRVDLIIKALAALAKARP-----SIKIK-WTHIGGGPLE--DTLKEL 281 (407)
T ss_pred C----------CCCCCCEEEEEeeccccc----cCHHHHHHHHHHHHHhCC-----CceEE-EEEEeCchHH--HHHHHH
Confidence 1 123567899999998877 556999999998854221 12456 4778888875 889998
Q ss_pred HHHcCCCCCeEEEec--ChhhHHHHHHH--cCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEE
Q 003758 166 ASRLGLLEHSVRHYG--FNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFF 241 (797)
Q Consensus 166 a~elgL~d~~V~flG--~~edl~~~L~a--ADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lf 241 (797)
+++.+..+ +|+|+| +.+++..+|+. +|++++||..| |+|++++||||+|+|||+++.+|++|++.++++|+++
T Consensus 282 ~~~~~~~~-~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~E--g~p~~llEAma~G~PVIas~vgg~~e~i~~~~~G~l~ 358 (407)
T cd04946 282 AESKPENI-SVNFTGELSNSEVYKLYKENPVDVFVNLSESE--GLPVSIMEAMSFGIPVIATNVGGTPEIVDNGGNGLLL 358 (407)
T ss_pred HHhcCCCc-eEEEecCCChHHHHHHHhhcCCCEEEeCCccc--cccHHHHHHHHcCCCEEeCCCCCcHHHhcCCCcEEEe
Confidence 88877776 899999 45689999976 78999999999 9999999999999999999999999999999999999
Q ss_pred cC-CCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHH
Q 003758 242 QK-DNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC-VTRY 289 (797)
Q Consensus 242 d~-~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y 289 (797)
++ +|+++++++|..+++|++. +.+|+++|++.+.+.|+.+. .++|
T Consensus 359 ~~~~~~~~la~~I~~ll~~~~~---~~~m~~~ar~~~~~~f~~~~~~~~~ 405 (407)
T cd04946 359 SKDPTPNELVSSLSKFIDNEEE---YQTMREKAREKWEENFNASKNYREF 405 (407)
T ss_pred CCCCCHHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHHcCHHHhHHHh
Confidence 86 4899999999999999887 89999999999998888876 4454
No 52
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.90 E-value=9.8e-23 Score=222.51 Aligned_cols=220 Identities=15% Similarity=0.197 Sum_probs=170.7
Q ss_pred HhccCEEEecCCchHHH--hhCCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEEEEEccccccccccc
Q 003758 42 FSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSW 119 (797)
Q Consensus 42 ~~~AD~VV~ps~~l~~i--~~gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~K 119 (797)
+..+|.+++.+...... ..+++..++.+||| |+|. +.+.... .-..++++|+++|++... + .|
T Consensus 131 ~~~~d~~i~~S~~~~~~~~~~~~~~~ki~vi~N-~id~---~~~~~~~---------~~~~~~~~i~~~Grl~~~-~-~k 195 (359)
T PRK09922 131 ITCADYHLAISSGIKEQMMARGISAQRISVIYN-PVEI---KTIIIPP---------PERDKPAVFLYVGRLKFE-G-QK 195 (359)
T ss_pred hhcCCEEEEcCHHHHHHHHHcCCCHHHEEEEcC-CCCH---HHccCCC---------cccCCCcEEEEEEEEecc-c-Cc
Confidence 47789999887554333 45777789999998 8986 3332111 012346789999997643 2 37
Q ss_pred cHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecCh----hhHHHHHHHcCEE
Q 003758 120 DYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN----GDVNGVLLMADIV 195 (797)
Q Consensus 120 n~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~----edl~~~L~aADV~ 195 (797)
++..+++++..+ .++++ ++++|+|+.. +.++++++++++.+ +|+|+|.. +.+..+|+.+|++
T Consensus 196 ~~~~l~~a~~~~----------~~~~~-l~ivG~g~~~--~~l~~~~~~~~l~~-~v~f~G~~~~~~~~~~~~~~~~d~~ 261 (359)
T PRK09922 196 NVKELFDGLSQT----------TGEWQ-LHIIGDGSDF--EKCKAYSRELGIEQ-RIIWHGWQSQPWEVVQQKIKNVSAL 261 (359)
T ss_pred CHHHHHHHHHhh----------CCCeE-EEEEeCCccH--HHHHHHHHHcCCCC-eEEEecccCCcHHHHHHHHhcCcEE
Confidence 889999998765 13688 5899999876 89999999999988 99999943 4578888999999
Q ss_pred EEccCCCCCCccHHHHHHHHhCCcEEEcC-CCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Q 003758 196 LYGSSQVEQGFPSLIVRAMTFGIPVITPD-FPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGR 274 (797)
Q Consensus 196 V~PS~~Ee~GFPlvLLEAMA~G~PVIasd-~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aR 274 (797)
|+||..| |||++++||||||+|||+++ .+|..|++.++.+|++++++|+++++++|..++++++.+ ....+.++++
T Consensus 262 v~~s~~E--gf~~~~lEAma~G~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~~~-~~~~~~~~~~ 338 (359)
T PRK09922 262 LLTSKFE--GFPMTLLEAMSYGIPCISSDCMSGPRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEVKY-QHDAIPNSIE 338 (359)
T ss_pred EECCccc--CcChHHHHHHHcCCCEEEeCCCCChHHHccCCCceEEECCCCHHHHHHHHHHHHhCcccC-CHHHHHHHHH
Confidence 9999998 99999999999999999999 899999999999999999999999999999999999852 1344455555
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHh
Q 003758 275 LHAKNMLALDCVTRYARILENVL 297 (797)
Q Consensus 275 k~ak~~~s~e~i~~Y~kLLe~lL 297 (797)
+++.+. ..+++..+|+.++
T Consensus 339 ~~~~~~----~~~~~~~~~~~~~ 357 (359)
T PRK09922 339 RFYEVL----YFKNLNNALFSKL 357 (359)
T ss_pred HhhHHH----HHHHHHHHHHHHh
Confidence 555544 3455555555543
No 53
>PHA01630 putative group 1 glycosyl transferase
Probab=99.90 E-value=4.5e-22 Score=217.53 Aligned_cols=239 Identities=16% Similarity=0.166 Sum_probs=171.7
Q ss_pred CCCCEEEEEccchhhhhhhhhhhhhHHHHHHHHHH-H-HhccCEEEecCCchHHH--hhCCC-CCCEEEeCCCCCCchhh
Q 003758 6 HSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKS-V-FSRVNVIVFPDYTLPML--YSVLD-AGNFFVIPGSPADVWAV 80 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~~-~-~~~AD~VV~ps~~l~~i--~~gld-~~ki~VIPnsGVDvw~a 80 (797)
.++|+|.++|+.. + +...+.. . .+++|.|++++...... ..+++ ++++.+||| |||.
T Consensus 68 ~~~~~v~e~~~~~---~-----------l~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpN-GVd~--- 129 (331)
T PHA01630 68 VGKNIVFEVADTD---A-----------ISHTALYFFRNQPVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPH-NLNP--- 129 (331)
T ss_pred cCCceEEEEEeec---h-----------hhHHHHHHHhhccCCEEEECCHHHHHHHHHcCCCCCCCEEEECC-CCCH---
Confidence 4679999999721 1 1111222 2 47799999998766554 34555 468999998 9997
Q ss_pred hhcccchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHH
Q 003758 81 EAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYND 160 (797)
Q Consensus 81 e~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e 160 (797)
+.|.+.... ....++++++|++... ||++.+++|+..+. +..+++++ +++|.+... .
T Consensus 130 ~~f~~~~~~---------~~~~~vl~~~g~~~~~----Kg~d~Li~A~~~l~-------~~~~~~~l-livG~~~~~--~ 186 (331)
T PHA01630 130 RMFEYKPKE---------KPHPCVLAILPHSWDR----KGGDIVVKIFHELQ-------NEGYDFYF-LIKSSNMLD--P 186 (331)
T ss_pred HHcCCCccc---------cCCCEEEEEecccccc----CCHHHHHHHHHHHH-------hhCCCEEE-EEEeCcccc--h
Confidence 666433110 1245567677776666 66799999998884 33468884 788865543 2
Q ss_pred HHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEE
Q 003758 161 ALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIF 240 (797)
Q Consensus 161 ~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~L 240 (797)
.+ .++.. +....+.+++..+|+.||++|+||..| |||++++||||||+|||+++.+|++|++.++.||++
T Consensus 187 ~l------~~~~~--~~~~v~~~~l~~~y~~aDv~v~pS~~E--~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~l 256 (331)
T PHA01630 187 RL------FGLNG--VKTPLPDDDIYSLFAGCDILFYPVRGG--AFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYW 256 (331)
T ss_pred hh------ccccc--eeccCCHHHHHHHHHhCCEEEECCccc--cCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEE
Confidence 11 13332 222236789999999999999999998 999999999999999999999999999999999888
Q ss_pred EcC-------------------CCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 003758 241 FQK-------------------DNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILEN 295 (797)
Q Consensus 241 fd~-------------------~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLLe~ 295 (797)
++. .|.+++++++..++.+++..+.++.++.+++..++++.+..++++|.++|++
T Consensus 257 v~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 257 IKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred eeecccccccccCCcccccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 763 3788899999999987521122555666666677777777778899999874
No 54
>PLN02949 transferase, transferring glycosyl groups
Probab=99.90 E-value=3.8e-22 Score=227.19 Aligned_cols=230 Identities=15% Similarity=0.027 Sum_probs=177.2
Q ss_pred HHhccCEEEecCCchHHH-hh-CCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEEEEEcccccccccc
Q 003758 41 VFSRVNVIVFPDYTLPML-YS-VLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELS 118 (797)
Q Consensus 41 ~~~~AD~VV~ps~~l~~i-~~-gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~ 118 (797)
....+|.|++++...... .. ...+.++.++++ |+|. +.+.... ...+.++.+|+++|++.+.
T Consensus 217 ~~~~ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp-~vd~---~~~~~~~--------~~~~~~~~~il~vGR~~~~---- 280 (463)
T PLN02949 217 VGRCAHLAMVNSSWTKSHIEALWRIPERIKRVYP-PCDT---SGLQALP--------LERSEDPPYIISVAQFRPE---- 280 (463)
T ss_pred HcCCCCEEEECCHHHHHHHHHHcCCCCCeEEEcC-CCCH---HHcccCC--------ccccCCCCEEEEEEeeecc----
Confidence 347899999887655443 22 222346777876 7876 3332111 0112345689999998766
Q ss_pred ccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCC----CCHHHHHHHHHHcCCCCCeEEEec--ChhhHHHHHHHc
Q 003758 119 WDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTD----GYNDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMA 192 (797)
Q Consensus 119 Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~----~Y~e~Leela~elgL~d~~V~flG--~~edl~~~L~aA 192 (797)
||++.+++|+..+.+..+ +..++++ |+|+|++.. .|.+.++++++++++.+ +|+|+| +.+++..+|+.|
T Consensus 281 Kg~~llI~A~~~l~~~~~---~~~~~~~-LvIvG~~~~~~~~~~~~eL~~la~~l~L~~-~V~f~g~v~~~el~~ll~~a 355 (463)
T PLN02949 281 KAHALQLEAFALALEKLD---ADVPRPK-LQFVGSCRNKEDEERLQKLKDRAKELGLDG-DVEFHKNVSYRDLVRLLGGA 355 (463)
T ss_pred CCHHHHHHHHHHHHHhcc---ccCCCcE-EEEEeCCCCcccHHHHHHHHHHHHHcCCCC-cEEEeCCCCHHHHHHHHHhC
Confidence 777999999998864322 2347899 588888643 23467889999999998 999999 458899999999
Q ss_pred CEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChh-Hhhhc---CCeEEEEcCCCHHHHHHHHHHHHhC-cccHHHHH
Q 003758 193 DIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIK-EYVAE---GAQVIFFQKDNPEGLSRAFSLFISN-GKLSKFAR 267 (797)
Q Consensus 193 DV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~-EiI~D---g~nG~Lfd~~D~eeLAeaI~~LLed-pel~~~r~ 267 (797)
|++|+||..| +||++++||||+|+|||+++.+|.. +++.+ +.+|+++ .|+++++++|.+++++ ++. ++
T Consensus 356 ~~~v~~s~~E--~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~--~~~~~la~ai~~ll~~~~~~---r~ 428 (463)
T PLN02949 356 VAGLHSMIDE--HFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLA--TTVEEYADAILEVLRMRETE---RL 428 (463)
T ss_pred cEEEeCCccC--CCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccC--CCHHHHHHHHHHHHhCCHHH---HH
Confidence 9999999988 9999999999999999999999864 67765 6789988 4999999999999985 444 78
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHhc
Q 003758 268 TVASAGRLHAKNMLALDCVTRYARILENVLN 298 (797)
Q Consensus 268 ~m~~~aRk~ak~~~s~e~i~~Y~kLLe~lL~ 298 (797)
+|++++++.++++.+....+++.+++.++++
T Consensus 429 ~m~~~ar~~~~~FS~e~~~~~~~~~i~~l~~ 459 (463)
T PLN02949 429 EIAAAARKRANRFSEQRFNEDFKDAIRPILN 459 (463)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 8999999999776666668899999998876
No 55
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.89 E-value=9.4e-22 Score=206.64 Aligned_cols=235 Identities=17% Similarity=0.209 Sum_probs=178.1
Q ss_pred CCCCEEEEEccchhhhhhhhhhhhhHHHHHHHHHHHHhccCEEEecCCchHHHh--hCCCCCCEEEeCCCCCCchhhhhc
Q 003758 6 HSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPMLY--SVLDAGNFFVIPGSPADVWAVEAY 83 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~~~~~~AD~VV~ps~~l~~i~--~gld~~ki~VIPnsGVDvw~ae~F 83 (797)
.++|+|.++|+...... . ........|.+++++......+ .+....++.+||+ |+|. ..+
T Consensus 119 ~~~~~i~~~hd~~~~~~-----~---------~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~vi~n-~~~~---~~~ 180 (359)
T cd03823 119 RGIPIVLTLHDYWLICP-----R---------QGLFKKGGDAVIAPSRFLLDRYVANGLFAEKISVIRN-GIDL---DRA 180 (359)
T ss_pred cCCCEEEEEeeeeeecc-----h---------hhhhccCCCEEEEeCHHHHHHHHHcCCCccceEEecC-CcCh---hhc
Confidence 35799999997321110 0 0001122388888876554442 3444578999998 8997 444
Q ss_pred ccchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHH
Q 003758 84 SKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQ 163 (797)
Q Consensus 84 ~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Le 163 (797)
..... +.+.++++|+++|++... |+++.+++++..+.. ++++ ++++|.++.. ....
T Consensus 181 ~~~~~--------~~~~~~~~i~~~G~~~~~----k~~~~li~~~~~l~~---------~~~~-l~i~G~~~~~--~~~~ 236 (359)
T cd03823 181 KRPRR--------APPGGRLRFGFIGQLTPH----KGVDLLLEAFKRLPR---------GDIE-LVIVGNGLEL--EEES 236 (359)
T ss_pred ccccc--------CCCCCceEEEEEecCccc----cCHHHHHHHHHHHHh---------cCcE-EEEEcCchhh--hHHH
Confidence 32211 356677899999998766 666999999987731 5788 5888988765 3333
Q ss_pred HHHHHcCCCCCeEEEecC--hhhHHHHHHHcCEEEEccC-CCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEE
Q 003758 164 EVASRLGLLEHSVRHYGF--NGDVNGVLLMADIVLYGSS-QVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIF 240 (797)
Q Consensus 164 ela~elgL~d~~V~flG~--~edl~~~L~aADV~V~PS~-~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~L 240 (797)
... +..+ +|++.|. .+++..+|+.||++|+||. .| |+|++++|||+||+|||+++.++..+++.++.+|++
T Consensus 237 ~~~---~~~~-~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e--~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~ 310 (359)
T cd03823 237 YEL---EGDP-RVEFLGAYPQEEIDDFYAEIDVLVVPSIWPE--NFPLVIREALAAGVPVIASDIGGMAELVRDGVNGLL 310 (359)
T ss_pred Hhh---cCCC-eEEEeCCCCHHHHHHHHHhCCEEEEcCcccC--CCChHHHHHHHCCCCEEECCCCCHHHHhcCCCcEEE
Confidence 222 4555 8999995 4899999999999999997 56 999999999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 003758 241 FQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILE 294 (797)
Q Consensus 241 fd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLLe 294 (797)
++++|+++++++|..++++++. +..+++++++.... ...+++|.++|+
T Consensus 311 ~~~~d~~~l~~~i~~l~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~ 358 (359)
T cd03823 311 FPPGDAEDLAAALERLIDDPDL---LERLRAGIEPPRSI---EDQAEEYLKLYR 358 (359)
T ss_pred ECCCCHHHHHHHHHHHHhChHH---HHHHHHhHHHhhhH---HHHHHHHHHHhh
Confidence 9999999999999999999987 78888888887765 555778888775
No 56
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.89 E-value=1.1e-21 Score=217.01 Aligned_cols=225 Identities=16% Similarity=0.223 Sum_probs=166.3
Q ss_pred HHHHhccCEEEecCCchHHHhh---CCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEEEEEccccccc
Q 003758 39 KSVFSRVNVIVFPDYTLPMLYS---VLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYN 115 (797)
Q Consensus 39 ~~~~~~AD~VV~ps~~l~~i~~---gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~K 115 (797)
+..++++|.|++.+........ +....++.+||| |||. +.|.+.... ...+..+.++|+++|++...
T Consensus 167 ~~~~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipn-gvd~---~~f~~~~~~-----~~~~~~~~~~ilf~G~l~~~- 236 (397)
T TIGR03087 167 RAIAARFDAATFVSRAEAELFRRLAPEAAGRITAFPN-GVDA---DFFSPDRDY-----PNPYPPGKRVLVFTGAMDYW- 236 (397)
T ss_pred HHHHhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeec-ccch---hhcCCCccc-----cCCCCCCCcEEEEEEecCCc-
Confidence 3478899999998766554432 345678999998 9998 666443211 11233456789999998877
Q ss_pred cccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEE
Q 003758 116 ELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIV 195 (797)
Q Consensus 116 Gl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~ 195 (797)
||.+.++..+..++... ++..++++ ++|+|.++. ..++ +++..+ +|+++|..+++..+|+.||++
T Consensus 237 ---k~~~~l~~~~~~~~~~l---~~~~p~~~-l~ivG~g~~---~~~~----~l~~~~-~V~~~G~v~~~~~~~~~adv~ 301 (397)
T TIGR03087 237 ---PNIDAVVWFAERVFPAV---RARRPAAE-FYIVGAKPS---PAVR----ALAALP-GVTVTGSVADVRPYLAHAAVA 301 (397)
T ss_pred ---cCHHHHHHHHHHHHHHH---HHHCCCcE-EEEECCCCh---HHHH----HhccCC-CeEEeeecCCHHHHHHhCCEE
Confidence 55577775544333222 23457899 588998875 3333 334444 799999888999999999999
Q ss_pred EEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q 003758 196 LYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRL 275 (797)
Q Consensus 196 V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk 275 (797)
|+||...+ |+|++++||||||+|||+++.++- .+...+.+|++++ +|+++++++|.++++|++. ++.|++++++
T Consensus 302 v~Ps~~~e-G~~~~~lEAma~G~PVV~t~~~~~-~i~~~~~~g~lv~-~~~~~la~ai~~ll~~~~~---~~~~~~~ar~ 375 (397)
T TIGR03087 302 VAPLRIAR-GIQNKVLEAMAMAKPVVASPEAAE-GIDALPGAELLVA-ADPADFAAAILALLANPAE---REELGQAARR 375 (397)
T ss_pred EecccccC-CcccHHHHHHHcCCCEEecCcccc-cccccCCcceEeC-CCHHHHHHHHHHHHcCHHH---HHHHHHHHHH
Confidence 99997422 999999999999999999997532 2333445688887 8999999999999999987 8999999999
Q ss_pred HHHHhcHHHH-HHHHHHHHH
Q 003758 276 HAKNMLALDC-VTRYARILE 294 (797)
Q Consensus 276 ~ak~~~s~e~-i~~Y~kLLe 294 (797)
++.+.|+++. ++++.++|+
T Consensus 376 ~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 376 RVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHhCCHHHHHHHHHHHhc
Confidence 9977666655 778888774
No 57
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.89 E-value=2.3e-21 Score=217.00 Aligned_cols=257 Identities=13% Similarity=0.060 Sum_probs=181.9
Q ss_pred CCCCEEEEEccchhhh-hhhhhhhhhHHHHHHHHH-HHHhccCEEEecCCchHHH--hhCCCCCCEEEeCCCCCCchhhh
Q 003758 6 HSIPLVWIIQEDSLAN-RLPVYVERGFQNLLSYWK-SVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVE 81 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~~-rL~~y~~~g~eklls~~~-~~~~~AD~VV~ps~~l~~i--~~gld~~ki~VIPnsGVDvw~ae 81 (797)
.++|+|.++|+..... .+.........++...+. ..++.+|.|++.+...... ..+++.+++.|||| |++ .
T Consensus 120 ~~~~~V~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~vS~~~~~~l~~~~~~~~ki~vI~N-g~~----~ 194 (415)
T cd03816 120 RRTKLIIDWHNYGYTILALKLGENHPLVRLAKWYEKLFGRLADYNLCVTKAMKEDLQQFNNWKIRATVLYD-RPP----E 194 (415)
T ss_pred hCCeEEEEcCCchHHHHhcccCCCCHHHHHHHHHHHHHhhcCCEeeecCHHHHHHHHhhhccCCCeeecCC-CCH----H
Confidence 3689999999742110 010001111122223332 2567899999988765543 34678899999998 633 4
Q ss_pred hcccchhHH---HHHH-------------HcCC-CCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCC
Q 003758 82 AYSKSHEKY---QLRK-------------ENGF-LKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGS 144 (797)
Q Consensus 82 ~F~~s~~k~---slR~-------------klGL-~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pd 144 (797)
.|.+..... .... ..++ +++.++++++|++... ||++.+++|+..+...... ....++
T Consensus 195 ~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~~----K~~~~li~A~~~l~~~~~~-~~~~~~ 269 (415)
T cd03816 195 QFRPLPLEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTPD----EDFGILLDALVAYEKSAAT-GPKLPK 269 (415)
T ss_pred HceeCcHHHHHHHHHhccccccccccccccceecCCCceEEEEeccccCC----CCHHHHHHHHHHHHHhhcc-cccCCC
Confidence 454432111 1110 1122 3445678888998777 6669999999888532211 112468
Q ss_pred cEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEec--ChhhHHHHHHHcCEEEEccCC-CCCCccHHHHHHHHhCCcEE
Q 003758 145 FKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQ-VEQGFPSLIVRAMTFGIPVI 221 (797)
Q Consensus 145 vkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG--~~edl~~~L~aADV~V~PS~~-Ee~GFPlvLLEAMA~G~PVI 221 (797)
++ ++|+|+|+.. +.++++++++++.+ .+.+.| +.+++..+|++||++|.|+.. ..+|+|++++||||||+|||
T Consensus 270 i~-l~ivG~G~~~--~~l~~~~~~~~l~~-~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI 345 (415)
T cd03816 270 LL-CIITGKGPLK--EKYLERIKELKLKK-VTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVC 345 (415)
T ss_pred EE-EEEEecCccH--HHHHHHHHHcCCCc-EEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEE
Confidence 99 5899999876 99999999999986 444556 568999999999999975321 11289999999999999999
Q ss_pred EcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHHHHHhc
Q 003758 222 TPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN---GKLSKFARTVASAGRLHAKNML 281 (797)
Q Consensus 222 asd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLed---pel~~~r~~m~~~aRk~ak~~~ 281 (797)
+++.++++|++.++.+|++++ |+++|+++|..+++| ++. +++|++++++.++..+
T Consensus 346 ~s~~~~~~eiv~~~~~G~lv~--d~~~la~~i~~ll~~~~~~~~---~~~m~~~~~~~~~~~~ 403 (415)
T cd03816 346 ALDFKCIDELVKHGENGLVFG--DSEELAEQLIDLLSNFPNRGK---LNSLKKGAQEESELRW 403 (415)
T ss_pred EeCCCCHHHHhcCCCCEEEEC--CHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHhhhcCH
Confidence 999999999999999999994 899999999999999 665 8999999999886553
No 58
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.89 E-value=1.8e-21 Score=218.56 Aligned_cols=220 Identities=16% Similarity=0.066 Sum_probs=165.6
Q ss_pred HHHHhccCEEEecCCchHHHh-h-CCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEEEEEcccccccc
Q 003758 39 KSVFSRVNVIVFPDYTLPMLY-S-VLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNE 116 (797)
Q Consensus 39 ~~~~~~AD~VV~ps~~l~~i~-~-gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KG 116 (797)
....+.+|.|++++....... . +....++.||++ |+|+ +.|.+... ....+.++|+++|++.+.
T Consensus 184 ~~~~~~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~-gvd~---~~~~~~~~--------~~~~~~~~il~vgr~~~~-- 249 (419)
T cd03806 184 GLAGSFADVVMVNSTWTRNHIRSLWKRNTKPSIVYP-PCDV---EELLKLPL--------DEKTRENQILSIAQFRPE-- 249 (419)
T ss_pred HHHhhcCCEEEECCHHHHHHHHHHhCcCCCcEEEcC-CCCH---HHhccccc--------ccccCCcEEEEEEeecCC--
Confidence 346889999999876544432 2 222347889987 8997 55533211 123456799999998776
Q ss_pred ccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCC----CHHHHHHHHHHcCCCCCeEEEec--ChhhHHHHHH
Q 003758 117 LSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDG----YNDALQEVASRLGLLEHSVRHYG--FNGDVNGVLL 190 (797)
Q Consensus 117 l~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~----Y~e~Leela~elgL~d~~V~flG--~~edl~~~L~ 190 (797)
||+..+++|+..+....+... .++++ ++|+|.+... |.+.++++++++++.+ +|+|+| +.+++..+|+
T Consensus 250 --K~~~~li~A~~~l~~~~~~~~--~~~~~-lvivG~~~~~~~~~~~~~L~~~~~~l~l~~-~V~f~g~v~~~~l~~~l~ 323 (419)
T cd03806 250 --KNHPLQLRAFAKLLKRLPEEI--KEKIK-LVLIGSCRNEDDEKRVEDLKLLAKELGLED-KVEFVVNAPFEELLEELS 323 (419)
T ss_pred --CCHHHHHHHHHHHHHhCcccc--cCceE-EEEEcCCCCcccHHHHHHHHHHHHHhCCCC-eEEEecCCCHHHHHHHHH
Confidence 677999999998865433111 24688 5888887542 4577888899999987 999999 4789999999
Q ss_pred HcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCC-hhHhhh---cCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHH
Q 003758 191 MADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPI-IKEYVA---EGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFA 266 (797)
Q Consensus 191 aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gG-i~EiI~---Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r 266 (797)
.||++|+||..| +||++++||||||+|||+++.+| ..+++. ++.+|++++ |+++++++|.+++++++. .+
T Consensus 324 ~adv~v~~s~~E--~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~~~~~--~~ 397 (419)
T cd03806 324 TASIGLHTMWNE--HFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLAS--TAEEYAEAIEKILSLSEE--ER 397 (419)
T ss_pred hCeEEEECCccC--CcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEeC--CHHHHHHHHHHHHhCCHH--HH
Confidence 999999999998 99999999999999999999976 467887 899999984 999999999999998764 14
Q ss_pred HHHHHHHHHHHHHhcHHHH
Q 003758 267 RTVASAGRLHAKNMLALDC 285 (797)
Q Consensus 267 ~~m~~~aRk~ak~~~s~e~ 285 (797)
+.++.+++ .+.+.|+.+.
T Consensus 398 ~~~~~~~~-~~~~~fs~~~ 415 (419)
T cd03806 398 LRIRRAAR-SSVKRFSDEE 415 (419)
T ss_pred HHHHHHHH-HHHHhhCHHH
Confidence 44544444 4555555543
No 59
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.88 E-value=4.6e-21 Score=202.83 Aligned_cols=226 Identities=15% Similarity=0.079 Sum_probs=168.3
Q ss_pred CCCCCEEEEEccchhhhhhhhhhhhhHHHHHHHHHHHHhccCEEEecCCchHHHhhCCCCCCEEEeCCCCCCchhhhhcc
Q 003758 5 FHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYS 84 (797)
Q Consensus 5 F~~IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~~~~~~AD~VV~ps~~l~~i~~gld~~ki~VIPnsGVDvw~ae~F~ 84 (797)
..++|+|+++|......... ........+.+++.+.......... .++.+||| |+|. +.|.
T Consensus 105 ~~~~~~v~~~h~~~~~~~~~-------------~~~~~~~~~~~~~~s~~~~~~~~~~--~~~~vi~n-gvd~---~~~~ 165 (335)
T cd03802 105 PLPVPVVTTLHGPPDPELLK-------------LYYAARPDVPFVSISDAQRRPWPPL--PWVATVHN-GIDL---DDYP 165 (335)
T ss_pred ccCCCEEEEecCCCCcccch-------------HHHhhCcCCeEEEecHHHHhhcccc--cccEEecC-CcCh---hhCC
Confidence 35789999999754322110 1234456666777665555444333 78999998 9997 5553
Q ss_pred cchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHH
Q 003758 85 KSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQE 164 (797)
Q Consensus 85 ~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Lee 164 (797)
. .+.++..|+++|++... ||++.+++++.. .+++ ++++|.++.. +.+..
T Consensus 166 ~------------~~~~~~~i~~~Gr~~~~----Kg~~~li~~~~~------------~~~~-l~i~G~~~~~--~~~~~ 214 (335)
T cd03802 166 F------------RGPKGDYLLFLGRISPE----KGPHLAIRAARR------------AGIP-LKLAGPVSDP--DYFYR 214 (335)
T ss_pred C------------CCCCCCEEEEEEeeccc----cCHHHHHHHHHh------------cCCe-EEEEeCCCCH--HHHHH
Confidence 2 12345689999998666 666888887632 3578 5889998765 56665
Q ss_pred HHHHcC-CCCCeEEEecC--hhhHHHHHHHcCEEEEccCC-CCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEE
Q 003758 165 VASRLG-LLEHSVRHYGF--NGDVNGVLLMADIVLYGSSQ-VEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIF 240 (797)
Q Consensus 165 la~elg-L~d~~V~flG~--~edl~~~L~aADV~V~PS~~-Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~L 240 (797)
.+.+.. +.+ +|.|.|. ..++..+|+.+|++|+||.. | +||++++||||||+|||+++.++++|++.++.+|++
T Consensus 215 ~~~~~~~~~~-~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E--~~~~~~lEAma~G~PvI~~~~~~~~e~i~~~~~g~l 291 (335)
T cd03802 215 EIAPELLDGP-DIEYLGEVGGAEKAELLGNARALLFPILWEE--PFGLVMIEAMACGTPVIAFRRGAVPEVVEDGVTGFL 291 (335)
T ss_pred HHHHhcccCC-cEEEeCCCCHHHHHHHHHhCcEEEeCCcccC--CcchHHHHHHhcCCCEEEeCCCCchhheeCCCcEEE
Confidence 555544 455 8999994 56789999999999999985 6 999999999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHHH
Q 003758 241 FQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC-VTRYARILE 294 (797)
Q Consensus 241 fd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y~kLLe 294 (797)
+++ +++++++|..+++.+. +++++.+.+.|+++. +++|.++|+
T Consensus 292 ~~~--~~~l~~~l~~l~~~~~---------~~~~~~~~~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 292 VDS--VEELAAAVARADRLDR---------AACRRRAERRFSAARMVDDYLALYR 335 (335)
T ss_pred eCC--HHHHHHHHHHHhccHH---------HHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 975 9999999999865432 345666666666655 779999874
No 60
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.88 E-value=3.8e-21 Score=207.55 Aligned_cols=195 Identities=19% Similarity=0.237 Sum_probs=150.5
Q ss_pred HHHHhccCEEEecCCchHHHhhCCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEEEEEcccccccccc
Q 003758 39 KSVFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELS 118 (797)
Q Consensus 39 ~~~~~~AD~VV~ps~~l~~i~~gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~ 118 (797)
...++++|.|++.+..........-..+..+||+ |+|. +.|.... ..+..++++|++...
T Consensus 148 ~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~vi~~-~~d~---~~~~~~~------------~~~~~il~~G~~~~~---- 207 (351)
T cd03804 148 RRSAARVDYFIANSRFVARRIKKYYGRDATVIYP-PVDT---DRFTPAE------------EKEDYYLSVGRLVPY---- 207 (351)
T ss_pred HHHhcCCCEEEECCHHHHHHHHHHhCCCcEEECC-CCCH---hhcCcCC------------CCCCEEEEEEcCccc----
Confidence 3467999999998876554432222234578887 8887 5443221 234478999998877
Q ss_pred ccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEec--ChhhHHHHHHHcCEEE
Q 003758 119 WDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVL 196 (797)
Q Consensus 119 Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG--~~edl~~~L~aADV~V 196 (797)
||++.+++|+..+ + ++ ++++|.|+.. +.+++ +..+ +|+|+| +.+++..+|+.||++|
T Consensus 208 K~~~~li~a~~~~-----------~-~~-l~ivG~g~~~--~~l~~-----~~~~-~V~~~g~~~~~~~~~~~~~ad~~v 266 (351)
T cd03804 208 KRIDLAIEAFNKL-----------G-KR-LVVIGDGPEL--DRLRA-----KAGP-NVTFLGRVSDEELRDLYARARAFL 266 (351)
T ss_pred cChHHHHHHHHHC-----------C-Cc-EEEEECChhH--HHHHh-----hcCC-CEEEecCCCHHHHHHHHHhCCEEE
Confidence 5669999999755 2 67 5889988764 55544 3445 799999 4566999999999999
Q ss_pred EccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Q 003758 197 YGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNG-KLSKFARTVASAGRL 275 (797)
Q Consensus 197 ~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedp-el~~~r~~m~~~aRk 275 (797)
+||. | +||++++|||+||+|||+++.++.+|++.++.+|++++++|+++++++|..+++++ .. ++.+.+++++
T Consensus 267 ~ps~-e--~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~~~~~---~~~~~~~~~~ 340 (351)
T cd03804 267 FPAE-E--DFGIVPVEAMASGTPVIAYGKGGALETVIDGVTGILFEEQTVESLAAAVERFEKNEDFD---PQAIRAHAER 340 (351)
T ss_pred ECCc-C--CCCchHHHHHHcCCCEEEeCCCCCcceeeCCCCEEEeCCCCHHHHHHHHHHHHhCcccC---HHHHHHHHHh
Confidence 9999 8 99999999999999999999999999999999999999999999999999999998 33 5555555544
Q ss_pred HHHHh
Q 003758 276 HAKNM 280 (797)
Q Consensus 276 ~ak~~ 280 (797)
++.+.
T Consensus 341 ~~~~~ 345 (351)
T cd03804 341 FSESR 345 (351)
T ss_pred cCHHH
Confidence 44433
No 61
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.87 E-value=5.1e-21 Score=186.12 Aligned_cols=169 Identities=20% Similarity=0.323 Sum_probs=146.8
Q ss_pred HHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHH
Q 003758 89 KYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASR 168 (797)
Q Consensus 89 k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~e 168 (797)
++..+.+.+.+.++++|+++|++... |+++.+++++..+... ..+++. ++|+|++... ..+...+..
T Consensus 2 ~~~~~~~~~~~~~~~~il~~g~~~~~----K~~~~li~a~~~l~~~------~~~~~~-l~i~G~~~~~--~~~~~~~~~ 68 (172)
T PF00534_consen 2 KDKLREKLKIPDKKKIILFIGRLDPE----KGIDLLIEAFKKLKEK------KNPNYK-LVIVGDGEYK--KELKNLIEK 68 (172)
T ss_dssp HHHHHHHTTT-TTSEEEEEESESSGG----GTHHHHHHHHHHHHHH------HHTTEE-EEEESHCCHH--HHHHHHHHH
T ss_pred hHHHHHHcCCCCCCeEEEEEecCccc----cCHHHHHHHHHHHHhh------cCCCeE-EEEEcccccc--ccccccccc
Confidence 56678888999999999999998877 6779999999988643 136788 5899966543 888899999
Q ss_pred cCCCCCeEEEecCh--hhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcCCCH
Q 003758 169 LGLLEHSVRHYGFN--GDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNP 246 (797)
Q Consensus 169 lgL~d~~V~flG~~--edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~ 246 (797)
+++.+ +|+++|.. +++..+|+.||++|+||..| +||.+++|||++|+|||+++.++..+++.++.+|+++++.|+
T Consensus 69 ~~~~~-~i~~~~~~~~~~l~~~~~~~di~v~~s~~e--~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~~~~ 145 (172)
T PF00534_consen 69 LNLKE-NIIFLGYVPDDELDELYKSSDIFVSPSRNE--GFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDPNDI 145 (172)
T ss_dssp TTCGT-TEEEEESHSHHHHHHHHHHTSEEEE-BSSB--SS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEESTTSH
T ss_pred ccccc-cccccccccccccccccccceecccccccc--ccccccccccccccceeeccccCCceeeccccceEEeCCCCH
Confidence 99987 89999955 58999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Q 003758 247 EGLSRAFSLFISNGKLSKFARTVASAGRLH 276 (797)
Q Consensus 247 eeLAeaI~~LLedpel~~~r~~m~~~aRk~ 276 (797)
++++++|.+++++++. ++.|+++++++
T Consensus 146 ~~l~~~i~~~l~~~~~---~~~l~~~~~~~ 172 (172)
T PF00534_consen 146 EELADAIEKLLNDPEL---RQKLGKNARER 172 (172)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHH---HHHHHHHhcCC
Confidence 9999999999999977 89999998874
No 62
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.86 E-value=1.8e-20 Score=217.22 Aligned_cols=242 Identities=12% Similarity=0.110 Sum_probs=175.2
Q ss_pred CEEEEEccchhhhhhhhhhhhhHHHHHH----HHHHHHhccCEEEecCCchHHHhhCCCCCCEEEeCCCCCCchhhhhcc
Q 003758 9 PLVWIIQEDSLANRLPVYVERGFQNLLS----YWKSVFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYS 84 (797)
Q Consensus 9 PVIW~IHE~sL~~rL~~y~~~g~eklls----~~~~~~~~AD~VV~ps~~l~~i~~gld~~ki~VIPnsGVDvw~ae~F~ 84 (797)
|+|-++|..-.. .+.+|....+..++- .|...+. ||.|++++.....+ ....+..+ + |||. +.|.
T Consensus 461 PVVasyHTny~e-Yl~~y~~g~L~~~llk~l~~~v~r~h-cD~VIaPS~atq~L----~~~vI~nV-n-GVDt---e~F~ 529 (794)
T PLN02501 461 HVVGVVHTNYLE-YIKREKNGALQAFFVKHINNWVTRAY-CHKVLRLSAATQDL----PKSVICNV-H-GVNP---KFLK 529 (794)
T ss_pred CeEEEEeCCcHH-HHhHhcchhHHHHHHHHHHHHHHHhh-CCEEEcCCHHHHHh----cccceeec-c-cccc---cccC
Confidence 899999975543 444454433444222 2333222 89999998555432 22222222 4 9998 7776
Q ss_pred cchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHH
Q 003758 85 KSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQE 164 (797)
Q Consensus 85 ~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Lee 164 (797)
+... ...+.++|+......++++|++... ||++.+++|+..+. +..++++ ++|+|+|+.. +.+++
T Consensus 530 P~~r-~~~~r~lgi~~~~kgiLfVGRLa~E----KGld~LLeAla~L~-------~~~pnvr-LvIVGDGP~r--eeLe~ 594 (794)
T PLN02501 530 IGEK-VAEERELGQQAFSKGAYFLGKMVWA----KGYRELIDLLAKHK-------NELDGFN-LDVFGNGEDA--HEVQR 594 (794)
T ss_pred Ccch-hHHHHhcCCccccCceEEEEccccc----CCHHHHHHHHHHHH-------hhCCCeE-EEEEcCCccH--HHHHH
Confidence 6532 2223567776555568999999888 66699999998774 2346788 6999999987 89999
Q ss_pred HHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcCC
Q 003758 165 VASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKD 244 (797)
Q Consensus 165 la~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~ 244 (797)
++.++++ .|.|+|..++...+|+.+||+|+||..| |||++++||||||+|||+++.++.. ++.++.+|+++ +
T Consensus 595 la~eLgL---~V~FLG~~dd~~~lyasaDVFVlPS~sE--gFGlVlLEAMA~GlPVVATd~pG~e-~V~~g~nGll~--~ 666 (794)
T PLN02501 595 AAKRLDL---NLNFLKGRDHADDSLHGYKVFINPSISD--VLCTATAEALAMGKFVVCADHPSNE-FFRSFPNCLTY--K 666 (794)
T ss_pred HHHHcCC---EEEecCCCCCHHHHHHhCCEEEECCCcc--cchHHHHHHHHcCCCEEEecCCCCc-eEeecCCeEec--C
Confidence 9998877 4899998888889999999999999999 9999999999999999999999854 47777788765 7
Q ss_pred CHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Q 003758 245 NPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARI 292 (797)
Q Consensus 245 D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kL 292 (797)
|+++++++|..++.++.. +..+.. ...+.|..+.+++.+.
T Consensus 667 D~EafAeAI~~LLsd~~~---rl~~~a-----~~~~SWeAaadrLle~ 706 (794)
T PLN02501 667 TSEDFVAKVKEALANEPQ---PLTPEQ-----RYNLSWEAATQRFMEY 706 (794)
T ss_pred CHHHHHHHHHHHHhCchh---hhHHHH-----HhhCCHHHHHHHHHHh
Confidence 999999999999998864 222221 2355555555555554
No 63
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.85 E-value=7.1e-20 Score=207.84 Aligned_cols=247 Identities=13% Similarity=0.132 Sum_probs=175.2
Q ss_pred CCEEEEEccchhhhhhhhhhhhh----HHHHHHHHHHHHhccCEEEecCCchHHHhhCCCCCCEEEeCCCCCCchhhhhc
Q 003758 8 IPLVWIIQEDSLANRLPVYVERG----FQNLLSYWKSVFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAY 83 (797)
Q Consensus 8 IPVIW~IHE~sL~~rL~~y~~~g----~eklls~~~~~~~~AD~VV~ps~~l~~i~~gld~~ki~VIPnsGVDvw~ae~F 83 (797)
.++|-+.|.... ..+.+|.... ..+++..|...+ .+|.|++++.....+. +...+.++ |||. +.|
T Consensus 142 ~~vV~tyHT~y~-~Y~~~~~~g~~~~~l~~~~~~~~~r~-~~d~vi~pS~~~~~l~-----~~~i~~v~-GVd~---~~f 210 (462)
T PLN02846 142 RLVIGIVHTNYL-EYVKREKNGRVKAFLLKYINSWVVDI-YCHKVIRLSAATQDYP-----RSIICNVH-GVNP---KFL 210 (462)
T ss_pred CcEEEEECCChH-HHHHHhccchHHHHHHHHHHHHHHHH-hcCEEEccCHHHHHHh-----hCEEecCc-eech---hhc
Confidence 458888998443 2233333111 122223333222 4899999986554332 23444455 9998 666
Q ss_pred ccchhHHHHHHHcCCCCC--CEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHH
Q 003758 84 SKSHEKYQLRKENGFLKD--EIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDA 161 (797)
Q Consensus 84 ~~s~~k~slR~klGL~~d--~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~ 161 (797)
.+.... .+...+ +.+ .++++++|++... ||++.+++|+..+. +..++++ |+|+|+|++. +.
T Consensus 211 ~~~~~~--~~~~~~-~~~~~~~~~l~vGRL~~e----K~~~~Li~a~~~l~-------~~~~~~~-l~ivGdGp~~--~~ 273 (462)
T PLN02846 211 EIGKLK--LEQQKN-GEQAFTKGAYYIGKMVWS----KGYKELLKLLHKHQ-------KELSGLE-VDLYGSGEDS--DE 273 (462)
T ss_pred CCCccc--HhhhcC-CCCCcceEEEEEecCccc----CCHHHHHHHHHHHH-------hhCCCeE-EEEECCCccH--HH
Confidence 544221 333333 333 2468999999888 67799999998874 2346788 6999999987 99
Q ss_pred HHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEE
Q 003758 162 LQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFF 241 (797)
Q Consensus 162 Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lf 241 (797)
+++++.++++.. .| |.|. .+..++|+.+|++|+||..| +||++++||||||+|||+++.++ .+++.++.||+++
T Consensus 274 L~~~a~~l~l~~-~v-f~G~-~~~~~~~~~~DvFv~pS~~E--t~g~v~lEAmA~G~PVVa~~~~~-~~~v~~~~ng~~~ 347 (462)
T PLN02846 274 VKAAAEKLELDV-RV-YPGR-DHADPLFHDYKVFLNPSTTD--VVCTTTAEALAMGKIVVCANHPS-NEFFKQFPNCRTY 347 (462)
T ss_pred HHHHHHhcCCcE-EE-ECCC-CCHHHHHHhCCEEEECCCcc--cchHHHHHHHHcCCcEEEecCCC-cceeecCCceEec
Confidence 999999998864 44 6774 35568999999999999999 99999999999999999999998 5999999999988
Q ss_pred cCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhc
Q 003758 242 QKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVLN 298 (797)
Q Consensus 242 d~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLLe~lL~ 298 (797)
.|+++++++|..++.++.. .+...++ ..+.|+.+++++.++++--..
T Consensus 348 --~~~~~~a~ai~~~l~~~~~-----~~~~~a~---~~~SWe~~~~~l~~~~~~~~~ 394 (462)
T PLN02846 348 --DDGKGFVRATLKALAEEPA-----PLTDAQR---HELSWEAATERFLRVADLDLP 394 (462)
T ss_pred --CCHHHHHHHHHHHHccCch-----hHHHHHH---HhCCHHHHHHHHHHHhccCCc
Confidence 5899999999999986531 1222222 366666668899999886433
No 64
>PHA01633 putative glycosyl transferase group 1
Probab=99.85 E-value=6.7e-20 Score=200.74 Aligned_cols=223 Identities=15% Similarity=0.089 Sum_probs=164.2
Q ss_pred HHHHHHhccCEEEecCCchHH-H-hhCCCCCCEEEeCCCCCCchhhhhcccch-hHHHHHHHcCCC-CCCEEEEEEcccc
Q 003758 37 YWKSVFSRVNVIVFPDYTLPM-L-YSVLDAGNFFVIPGSPADVWAVEAYSKSH-EKYQLRKENGFL-KDEIVVVVVGSSF 112 (797)
Q Consensus 37 ~~~~~~~~AD~VV~ps~~l~~-i-~~gld~~ki~VIPnsGVDvw~ae~F~~s~-~k~slR~klGL~-~d~~vIL~VGrl~ 112 (797)
.+...+.+.+.+|+++..... + ..|++.. + +|++ |||. +.|.+.. ....++++++.. ++.++|+++|++.
T Consensus 85 ~y~~~m~~~~~vIavS~~t~~~L~~~G~~~~-i-~I~~-GVD~---~~f~p~~~~~~~~r~~~~~~~~~~~~i~~vGRl~ 158 (335)
T PHA01633 85 IVNKYLLQDVKFIPNSKFSAENLQEVGLQVD-L-PVFH-GINF---KIVENAEKLVPQLKQKLDKDFPDTIKFGIVSGLT 158 (335)
T ss_pred HHHHHHhcCCEEEeCCHHHHHHHHHhCCCCc-e-eeeC-CCCh---hhcCccchhhHHHHHHhCcCCCCCeEEEEEeCCc
Confidence 355566666777776644333 3 3466644 3 4666 9998 7776543 234567777753 4677999999988
Q ss_pred ccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEec-----ChhhHHH
Q 003758 113 FYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG-----FNGDVNG 187 (797)
Q Consensus 113 ~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG-----~~edl~~ 187 (797)
.. ||++.+++|+..|..+.+.. ..+++ ++++|. . ..+++++.+ +|+|+| +.+++..
T Consensus 159 ~~----KG~~~LI~A~~~L~~~~p~~---~~~i~-l~ivG~------~----~~~~l~l~~-~V~f~g~~G~~~~~dl~~ 219 (335)
T PHA01633 159 KR----KNMDLMLQVFNELNTKYPDI---AKKIH-FFVISH------K----QFTQLEVPA-NVHFVAEFGHNSREYIFA 219 (335)
T ss_pred cc----cCHHHHHHHHHHHHHhCCCc---cccEE-EEEEcH------H----HHHHcCCCC-cEEEEecCCCCCHHHHHH
Confidence 77 66799999999886433211 12467 466662 1 234567777 899985 3578999
Q ss_pred HHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhc------------------CCeEEEEcCCCHHHH
Q 003758 188 VLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE------------------GAQVIFFQKDNPEGL 249 (797)
Q Consensus 188 ~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~D------------------g~nG~Lfd~~D~eeL 249 (797)
+|++||++|+||..| |||++++||||||+|||+++.++++|++.+ ...|++++..|+++|
T Consensus 220 ~y~~aDifV~PS~~E--gfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d~~~l 297 (335)
T PHA01633 220 FYGAMDFTIVPSGTE--GFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQIEDM 297 (335)
T ss_pred HHHhCCEEEECCccc--cCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeecCCCHHHH
Confidence 999999999999998 999999999999999999999999887552 234778888999999
Q ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 003758 250 SRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYA 290 (797)
Q Consensus 250 AeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~ 290 (797)
+++|..+++..+ ....+.++++.++.+.+...++.|.
T Consensus 298 a~ai~~~~~~~~----~~~~~~~~~~~a~~f~~~~~~~~~~ 334 (335)
T PHA01633 298 ANAIILAFELQD----REERSMKLKELAKKYDIRNLYTRFL 334 (335)
T ss_pred HHHHHHHHhccC----hhhhhHHHHHHHHhcCHHHHHHHhh
Confidence 999999977654 2334667888888888887777765
No 65
>PLN02275 transferase, transferring glycosyl groups
Probab=99.84 E-value=1.5e-19 Score=199.34 Aligned_cols=228 Identities=15% Similarity=0.104 Sum_probs=159.9
Q ss_pred CCCCEEEEEccchhh-hhhhhhhhhhHHHHHHHHH-HHHhccCEEEecCCchHHHh---hCCCCCCEEEeCCCCCCchhh
Q 003758 6 HSIPLVWIIQEDSLA-NRLPVYVERGFQNLLSYWK-SVFSRVNVIVFPDYTLPMLY---SVLDAGNFFVIPGSPADVWAV 80 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~-~rL~~y~~~g~eklls~~~-~~~~~AD~VV~ps~~l~~i~---~gld~~ki~VIPnsGVDvw~a 80 (797)
.++|+|.++|+.... ............++...+. ..++.+|.|++++....... .+++ +.+||| |+ .
T Consensus 125 ~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~~S~~~~~~l~~~~g~~---i~vi~n-~~-~--- 196 (371)
T PLN02275 125 RRAKFVIDWHNFGYTLLALSLGRSHPLVRLYRWYERHYGKMADGHLCVTKAMQHELDQNWGIR---ATVLYD-QP-P--- 196 (371)
T ss_pred hCCCEEEEcCCccHHHHhcccCCCCHHHHHHHHHHHHHHhhCCEEEECCHHHHHHHHHhcCCC---eEEECC-CC-H---
Confidence 368999999974210 0000001111222333332 36788999999987655442 2443 789998 53 3
Q ss_pred hhcccchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhc----------cCCCCcEEEEE
Q 003758 81 EAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRN----------SVEGSFKFVFL 150 (797)
Q Consensus 81 e~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk----------~~~pdvkfLII 150 (797)
+.|.+...... .. .....+++++|++... |+++.+++|+..+.......+ +..++++ +++
T Consensus 197 ~~f~~~~~~~~----~~-~~~~~~i~~~grl~~~----k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~-l~i 266 (371)
T PLN02275 197 EFFRPASLEIR----LR-PNRPALVVSSTSWTPD----EDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLL-FII 266 (371)
T ss_pred HHcCcCCchhc----cc-CCCcEEEEEeCceecc----CCHHHHHHHHHHHHhhhhhccccccccccccccCCCeE-EEE
Confidence 55543321111 11 2344577888998766 666999999987753322211 2357899 589
Q ss_pred EeCCCCCCHHHHHHHHHHcCCCCCeEEEec---ChhhHHHHHHHcCEEEEccC-CCCCCccHHHHHHHHhCCcEEEcCCC
Q 003758 151 CGNSTDGYNDALQEVASRLGLLEHSVRHYG---FNGDVNGVLLMADIVLYGSS-QVEQGFPSLIVRAMTFGIPVITPDFP 226 (797)
Q Consensus 151 vG~g~~~Y~e~Leela~elgL~d~~V~flG---~~edl~~~L~aADV~V~PS~-~Ee~GFPlvLLEAMA~G~PVIasd~g 226 (797)
+|+|+.. +.++++++++++++ |.|.+ +.+++..+|++||++|+|+. ...+|||++++||||||+|||+++.+
T Consensus 267 vG~G~~~--~~l~~~~~~~~l~~--v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g 342 (371)
T PLN02275 267 TGKGPQK--AMYEEKISRLNLRH--VAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 342 (371)
T ss_pred EeCCCCH--HHHHHHHHHcCCCc--eEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCC
Confidence 9999986 99999999999985 77765 47899999999999998642 21128999999999999999999999
Q ss_pred ChhHhhhcCCeEEEEcCCCHHHHHHHHHHHH
Q 003758 227 IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFI 257 (797)
Q Consensus 227 Gi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LL 257 (797)
+.+|++.++.+|++++ |+++|+++|.+++
T Consensus 343 g~~eiv~~g~~G~lv~--~~~~la~~i~~l~ 371 (371)
T PLN02275 343 CIGELVKDGKNGLLFS--SSSELADQLLELL 371 (371)
T ss_pred ChHHHccCCCCeEEEC--CHHHHHHHHHHhC
Confidence 9999999999999996 6999999998774
No 66
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.81 E-value=1.8e-18 Score=193.28 Aligned_cols=232 Identities=16% Similarity=0.171 Sum_probs=169.7
Q ss_pred HHHHHhccCEEEecCCchHHH--hhCCCCCCEEEeCCCCCCchhhhhcccc-hhHHHHHHHcCCCCCCEEEEEEcccccc
Q 003758 38 WKSVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKS-HEKYQLRKENGFLKDEIVVVVVGSSFFY 114 (797)
Q Consensus 38 ~~~~~~~AD~VV~ps~~l~~i--~~gld~~ki~VIPnsGVDvw~ae~F~~s-~~k~slR~klGL~~d~~vIL~VGrl~~~ 114 (797)
.+..++.+|.|++.+...... ..|++.+ +.++||..+|. ...... .....++.+++ .++++|+++|+.
T Consensus 172 ~r~~~~~~d~ii~~S~~~~~~l~~~g~~~~-i~vi~n~~~d~---~~~~~~~~~~~~~r~~~~--~~~~vil~~~~~--- 242 (425)
T PRK05749 172 YRLLFKNIDLVLAQSEEDAERFLALGAKNE-VTVTGNLKFDI---EVPPELAARAATLRRQLA--PNRPVWIAASTH--- 242 (425)
T ss_pred HHHHHHhCCEEEECCHHHHHHHHHcCCCCC-cEecccccccC---CCChhhHHHHHHHHHHhc--CCCcEEEEeCCC---
Confidence 445788899999988666554 3466666 88898754554 211111 12345667776 455677777642
Q ss_pred ccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCC------------CeEEEecCh
Q 003758 115 NELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLE------------HSVRHYGFN 182 (797)
Q Consensus 115 KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d------------~~V~flG~~ 182 (797)
.++...+++|+..+. +..++++ ++|+|.|+.. .+.++++++++|+.. ..|.+.+..
T Consensus 243 ---~~~~~~ll~A~~~l~-------~~~~~~~-liivG~g~~r-~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~ 310 (425)
T PRK05749 243 ---EGEEELVLDAHRALL-------KQFPNLL-LILVPRHPER-FKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTM 310 (425)
T ss_pred ---chHHHHHHHHHHHHH-------HhCCCcE-EEEcCCChhh-HHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecH
Confidence 256788999998774 2357888 5899998863 367888888888741 135555566
Q ss_pred hhHHHHHHHcCEEEE-ccCCCCCCccHHHHHHHHhCCcEEEcCC-CChhHhhhcC-CeEEEEcCCCHHHHHHHHHHHHhC
Q 003758 183 GDVNGVLLMADIVLY-GSSQVEQGFPSLIVRAMTFGIPVITPDF-PIIKEYVAEG-AQVIFFQKDNPEGLSRAFSLFISN 259 (797)
Q Consensus 183 edl~~~L~aADV~V~-PS~~Ee~GFPlvLLEAMA~G~PVIasd~-gGi~EiI~Dg-~nG~Lfd~~D~eeLAeaI~~LLed 259 (797)
+++..+|+.||++++ +|..| ++|.+++|||+||+|||+++. ++..+++... .+|++++++|+++|+++|..+++|
T Consensus 311 ~el~~~y~~aDi~~v~~S~~e--~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d~~~La~~l~~ll~~ 388 (425)
T PRK05749 311 GELGLLYAIADIAFVGGSLVK--RGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVEDAEDLAKAVTYLLTD 388 (425)
T ss_pred HHHHHHHHhCCEEEECCCcCC--CCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEECCHHHHHHHHHHHhcC
Confidence 799999999999665 67666 899999999999999998765 4566665542 358888889999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHh
Q 003758 260 GKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVL 297 (797)
Q Consensus 260 pel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLLe~lL 297 (797)
++. +.+|+++|++.+.+. ...++++.+++...+
T Consensus 389 ~~~---~~~m~~~a~~~~~~~--~~~~~~~~~~l~~~l 421 (425)
T PRK05749 389 PDA---RQAYGEAGVAFLKQN--QGALQRTLQLLEPYL 421 (425)
T ss_pred HHH---HHHHHHHHHHHHHhC--ccHHHHHHHHHHHhc
Confidence 987 899999999999876 255667777776654
No 67
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.81 E-value=5.4e-18 Score=194.77 Aligned_cols=277 Identities=14% Similarity=0.149 Sum_probs=180.8
Q ss_pred CCCCEEEEEccchhhhhh-----hhhhh------------hhHHHHHHHHHHHHhccCEEEecCCchHHH---hhCCCCC
Q 003758 6 HSIPLVWIIQEDSLANRL-----PVYVE------------RGFQNLLSYWKSVFSRVNVIVFPDYTLPML---YSVLDAG 65 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~~rL-----~~y~~------------~g~eklls~~~~~~~~AD~VV~ps~~l~~i---~~gld~~ 65 (797)
..||.|.|+|...++..+ ..|.. .++....+.-+.+...||.|++.+.....- ..+.+++
T Consensus 171 ~~VptVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~eA~~~~I~~r~~iE~~aa~~Ad~fttVS~it~~E~~~Ll~~~pd 250 (590)
T cd03793 171 VDVSTIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKEAGKRGIYHRYCIERAAAHCAHVFTTVSEITAYEAEHLLKRKPD 250 (590)
T ss_pred CCCCEEEEecccccccccccCCcccchhhhhcchhhhhhcccchHHHHHHHHHHhhCCEEEECChHHHHHHHHHhCCCCC
Confidence 468999999965544421 11211 001111112234678899999887654433 3466666
Q ss_pred CEEEeCCCCCCchhhhhcccchh----------------HHHHHHHcCCCCCCEEEEE-EccccccccccccHHHHHHHH
Q 003758 66 NFFVIPGSPADVWAVEAYSKSHE----------------KYQLRKENGFLKDEIVVVV-VGSSFFYNELSWDYAVAMHDV 128 (797)
Q Consensus 66 ki~VIPnsGVDvw~ae~F~~s~~----------------k~slR~klGL~~d~~vIL~-VGrl~~~KGl~Kn~~lLLkAl 128 (797)
+ |||| |+|+ +.|....+ ...++..++++.+++++++ +||+... .||++.+|+|+
T Consensus 251 ~--ViPN-Gid~---~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~~~d~tli~f~~GR~e~~---nKGiDvlIeAl 321 (590)
T cd03793 251 V--VLPN-GLNV---KKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDFDLDKTLYFFTAGRYEFS---NKGADMFLEAL 321 (590)
T ss_pred E--EeCC-Ccch---hhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCCCCCCeEEEEEeeccccc---cCCHHHHHHHH
Confidence 5 9998 9999 77755431 2235666788878877777 7998663 26779999999
Q ss_pred HHHHHHHhhhccCCCCcEEEEEEeCCCCCC--------------------------------------------------
Q 003758 129 GPLLIKYARRNSVEGSFKFVFLCGNSTDGY-------------------------------------------------- 158 (797)
Q Consensus 129 ~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y-------------------------------------------------- 158 (797)
.+|-........+..-+.|+++-+ ..+.+
T Consensus 322 ~rLn~~l~~~~~~~tVvafii~p~-~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~~~~~~~l~~~~~~~~~~~~~~~~ 400 (590)
T cd03793 322 ARLNYLLKVEGSDTTVVAFFIMPA-KTNNFNVESLKGQAVRKQLRDTVNSVKEKIGKRLFEAALKGKLPDLEELLDKEDK 400 (590)
T ss_pred HHHHHHHHhcCCCCeEEEEEEecC-ccCCcCHHhhcchHHHHHHHHHHHHHHHHhhhhhhhHhhccCCCChhhhcchhhH
Confidence 999654432222222345543333 32211
Q ss_pred ---------------------------HHHHHHHHHHcCCCCC-----eEEEec---------ChhhHHHHHHHcCEEEE
Q 003758 159 ---------------------------NDALQEVASRLGLLEH-----SVRHYG---------FNGDVNGVLLMADIVLY 197 (797)
Q Consensus 159 ---------------------------~e~Leela~elgL~d~-----~V~flG---------~~edl~~~L~aADV~V~ 197 (797)
.+.+...++++++-++ .|+|++ ...+..++|+.||++|+
T Consensus 401 ~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L~~~~~~~g~~y~E~~~g~dl~v~ 480 (590)
T cd03793 401 VMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFLSSTNPLLGLDYEEFVRGCHLGVF 480 (590)
T ss_pred HHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEcccccCCCCCcCCcchHHHhhhceEEEe
Confidence 1111222222223221 356665 12358889999999999
Q ss_pred ccCCCCCCccHHHHHHHHhCCcEEEcCCCCh----hHhhhcC-CeEEEEc-------CCCHHHHHHHHHHHHhCcccHHH
Q 003758 198 GSSQVEQGFPSLIVRAMTFGIPVITPDFPII----KEYVAEG-AQVIFFQ-------KDNPEGLSRAFSLFISNGKLSKF 265 (797)
Q Consensus 198 PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi----~EiI~Dg-~nG~Lfd-------~~D~eeLAeaI~~LLedpel~~~ 265 (797)
||.+| |||++++||||||+|||+|+.+|+ .|++.++ ..|+++. +.++++|+++|.++++. ..
T Consensus 481 PS~yE--~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~m~~~~~~-~~--- 554 (590)
T cd03793 481 PSYYE--PWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQYMYEFCQL-SR--- 554 (590)
T ss_pred ccccC--CCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHHHHHHHHHHHhCC-cH---
Confidence 99999 999999999999999999999988 6766655 3466665 35588888999998854 33
Q ss_pred HHHHHHHHH--HHHHHhcHHHHHHHHHHHHHHHhc
Q 003758 266 ARTVASAGR--LHAKNMLALDCVTRYARILENVLN 298 (797)
Q Consensus 266 r~~m~~~aR--k~ak~~~s~e~i~~Y~kLLe~lL~ 298 (797)
++.+.++++ +.++.+.|...+..|.+.+..+++
T Consensus 555 r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 555 RQRIIQRNRTERLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 555655544 778888888889999999988775
No 68
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.81 E-value=7.3e-19 Score=200.13 Aligned_cols=209 Identities=12% Similarity=0.062 Sum_probs=154.2
Q ss_pred CCEEEeCCCCCCchhhhhcccchh----HHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhcc
Q 003758 65 GNFFVIPGSPADVWAVEAYSKSHE----KYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNS 140 (797)
Q Consensus 65 ~ki~VIPnsGVDvw~ae~F~~s~~----k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~ 140 (797)
.++.+||+ |||. +.|.+... ...+++..+...++++|+++|++... ||+..+++|+..++...+..+
T Consensus 227 ~~i~vip~-GID~---~~f~~~~~~~~~~~~~~~~~~~~~~~~~il~vgRl~~~----Kgi~~ll~A~~~ll~~~p~~~- 297 (460)
T cd03788 227 VRVGAFPI-GIDP---DAFRKLAASPEVQERAAELRERLGGRKLIVGVDRLDYS----KGIPERLLAFERLLERYPEWR- 297 (460)
T ss_pred EEEEEEeC-eEcH---HHHHHHhcCchhHHHHHHHHHhcCCCEEEEEecCcccc----CCHHHHHHHHHHHHHhChhhc-
Confidence 36889998 9998 66654321 22233345566788899999998877 566999999998876544322
Q ss_pred CCCCcEEEEEEeCCC-----C--CCHHHHHHHHHHcCCC-----CCeEEEe-c--ChhhHHHHHHHcCEEEEccCCCCCC
Q 003758 141 VEGSFKFVFLCGNST-----D--GYNDALQEVASRLGLL-----EHSVRHY-G--FNGDVNGVLLMADIVLYGSSQVEQG 205 (797)
Q Consensus 141 ~~pdvkfLIIvG~g~-----~--~Y~e~Leela~elgL~-----d~~V~fl-G--~~edl~~~L~aADV~V~PS~~Ee~G 205 (797)
.++++ +++|.+. . .+.+.+++++.+.+.. ...|.++ | +.+++..+|+.||++|+||..| |
T Consensus 298 --~~v~L-v~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~E--g 372 (460)
T cd03788 298 --GKVVL-VQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLRD--G 372 (460)
T ss_pred --CCEEE-EEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeCcccc--c
Confidence 34674 5555432 1 1233444444443221 0035555 5 6789999999999999999998 9
Q ss_pred ccHHHHHHHHhCCc----EEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhc
Q 003758 206 FPSLIVRAMTFGIP----VITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNML 281 (797)
Q Consensus 206 FPlvLLEAMA~G~P----VIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~ 281 (797)
||++++||||||+| ||+++.+|..+. +.+|+++++.|+++++++|..+++++. +.++.+++++++.+.++.
T Consensus 373 ~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---~~~g~lv~p~d~~~la~ai~~~l~~~~--~e~~~~~~~~~~~v~~~~ 447 (460)
T cd03788 373 MNLVAKEYVACQDDDPGVLILSEFAGAAEE---LSGALLVNPYDIDEVADAIHRALTMPL--EERRERHRKLREYVRTHD 447 (460)
T ss_pred cCcccceeEEEecCCCceEEEeccccchhh---cCCCEEECCCCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHhCC
Confidence 99999999999999 999999998887 456999999999999999999999775 237788899999998877
Q ss_pred HHHHHHHHHHH
Q 003758 282 ALDCVTRYARI 292 (797)
Q Consensus 282 s~e~i~~Y~kL 292 (797)
+...++.|..-
T Consensus 448 ~~~w~~~~l~~ 458 (460)
T cd03788 448 VQAWANSFLDD 458 (460)
T ss_pred HHHHHHHHHHh
Confidence 77777776643
No 69
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.79 E-value=1e-17 Score=190.77 Aligned_cols=233 Identities=12% Similarity=0.098 Sum_probs=166.4
Q ss_pred HHHHHhccCEEEecCCchHHH-------hhCC-----------CCCCEEEeCCCCCCchhhhhcccchh-------HHHH
Q 003758 38 WKSVFSRVNVIVFPDYTLPML-------YSVL-----------DAGNFFVIPGSPADVWAVEAYSKSHE-------KYQL 92 (797)
Q Consensus 38 ~~~~~~~AD~VV~ps~~l~~i-------~~gl-----------d~~ki~VIPnsGVDvw~ae~F~~s~~-------k~sl 92 (797)
..+.+-.+|.|.|.+.....- .-|+ ...++.++|+ |||. +.|.+... ...+
T Consensus 177 il~gll~~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~-GID~---~~f~~~~~~~~~~~~~~~l 252 (456)
T TIGR02400 177 LLEGLLAYDLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPI-GIDV---DRFAEQAKKPSVQKRIAEL 252 (456)
T ss_pred HHHHHhcCCEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecC-cCCH---HHHHHHhcChhHHHHHHHH
Confidence 445778899998875432211 0111 2345789998 9998 77654321 1235
Q ss_pred HHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEe----CCCCCCHHHHHHHHHH
Q 003758 93 RKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCG----NSTDGYNDALQEVASR 168 (797)
Q Consensus 93 R~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG----~g~~~Y~e~Leela~e 168 (797)
|+++ .++++|+++||+... ||+..+++|+..++...+... .++.+++++| +++. ...+++.+++
T Consensus 253 r~~~---~~~~vIl~VgRLd~~----KGi~~ll~A~~~ll~~~p~~~---~~v~Lv~v~~p~rg~~~~--~~~l~~~i~~ 320 (456)
T TIGR02400 253 RESL---KGRKLIIGVDRLDYS----KGLPERLLAFERFLEEHPEWR---GKVVLVQIAVPSRGDVPE--YQQLRRQVEE 320 (456)
T ss_pred HHHc---CCCeEEEEccccccc----cCHHHHHHHHHHHHHhCcccc---CceEEEEEecCCccCchH--HHHHHHHHHH
Confidence 5555 367799999998777 666999999999876554322 3466544443 2232 2445555544
Q ss_pred c--------CCCC-CeEEEec---ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCc----EEEcCCCChhHhh
Q 003758 169 L--------GLLE-HSVRHYG---FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIP----VITPDFPIIKEYV 232 (797)
Q Consensus 169 l--------gL~d-~~V~flG---~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~P----VIasd~gGi~EiI 232 (797)
+ +..+ ..|.+++ +.+++..+|++||++|+||..| |||++++||||||+| ||+|+.+|..+.+
T Consensus 321 lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~E--G~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l 398 (456)
T TIGR02400 321 LVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRD--GMNLVAKEYVAAQDPKDGVLILSEFAGAAQEL 398 (456)
T ss_pred HHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECcccc--ccCccHHHHHHhcCCCCceEEEeCCCCChHHh
Confidence 3 1110 0145554 5789999999999999999999 999999999999999 9999999998888
Q ss_pred hcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 003758 233 AEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARIL 293 (797)
Q Consensus 233 ~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLL 293 (797)
. +|+++++.|+++++++|.++++.+. ++++++.+.+++++.++.....++.|..-+
T Consensus 399 ~---~gllVnP~d~~~lA~aI~~aL~~~~--~er~~r~~~~~~~v~~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 399 N---GALLVNPYDIDGMADAIARALTMPL--EEREERHRAMMDKLRKNDVQRWREDFLSDL 454 (456)
T ss_pred C---CcEEECCCCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Confidence 4 5999999999999999999999765 347888888899988876666677766544
No 70
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.76 E-value=5e-17 Score=180.01 Aligned_cols=223 Identities=17% Similarity=0.202 Sum_probs=159.8
Q ss_pred HhccCEEEecCCchHH--HhhCCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEEEEEccccccccccc
Q 003758 42 FSRVNVIVFPDYTLPM--LYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSW 119 (797)
Q Consensus 42 ~~~AD~VV~ps~~l~~--i~~gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~K 119 (797)
.+.+|.+++++..... ...|++++++.++++ ||+. +.+.....+..+++++|++++.++|+++|+.... |
T Consensus 148 ~~~~d~~~~~s~~~~~~l~~~g~~~~ki~v~g~-~v~~---~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~----~ 219 (382)
T PLN02605 148 HKGVTRCFCPSEEVAKRALKRGLEPSQIRVYGL-PIRP---SFARAVRPKDELRRELGMDEDLPAVLLMGGGEGM----G 219 (382)
T ss_pred cCCCCEEEECCHHHHHHHHHcCCCHHHEEEECc-ccCH---hhccCCCCHHHHHHHcCCCCCCcEEEEECCCccc----c
Confidence 4689999998765543 356888899999976 8875 3322233466789999999999999999985443 6
Q ss_pred cHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEcc
Q 003758 120 DYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGS 199 (797)
Q Consensus 120 n~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS 199 (797)
+...+++++..++... ....+++++++++|++... .+.+++ ..... +|+++|..+++.++|++||++|.++
T Consensus 220 ~~~~li~~l~~~~~~~---~~~~~~~~~~vi~G~~~~~-~~~L~~----~~~~~-~v~~~G~~~~~~~l~~aaDv~V~~~ 290 (382)
T PLN02605 220 PLEETARALGDSLYDK---NLGKPIGQVVVICGRNKKL-QSKLES----RDWKI-PVKVRGFVTNMEEWMGACDCIITKA 290 (382)
T ss_pred cHHHHHHHHHHhhccc---cccCCCceEEEEECCCHHH-HHHHHh----hcccC-CeEEEeccccHHHHHHhCCEEEECC
Confidence 6688888876542100 0113557666888866321 133332 23334 6999998889999999999999843
Q ss_pred CCCCCCccHHHHHHHHhCCcEEEcCC-----CChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Q 003758 200 SQVEQGFPSLIVRAMTFGIPVITPDF-----PIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN-GKLSKFARTVASAG 273 (797)
Q Consensus 200 ~~Ee~GFPlvLLEAMA~G~PVIasd~-----gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLed-pel~~~r~~m~~~a 273 (797)
.|++++|||+||+|||+++. .+..+++.++..|++. +|+++|+++|..++.+ ++. +++|++++
T Consensus 291 ------g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g~~~--~~~~~la~~i~~ll~~~~~~---~~~m~~~~ 359 (382)
T PLN02605 291 ------GPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFGAFS--ESPKEIARIVAEWFGDKSDE---LEAMSENA 359 (382)
T ss_pred ------CcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCceeec--CCHHHHHHHHHHHHcCCHHH---HHHHHHHH
Confidence 47899999999999999984 1333445555557654 8999999999999998 665 88899999
Q ss_pred HHHHHHhcHHHHHHHHHHH
Q 003758 274 RLHAKNMLALDCVTRYARI 292 (797)
Q Consensus 274 Rk~ak~~~s~e~i~~Y~kL 292 (797)
++.+....+.++++...++
T Consensus 360 ~~~~~~~a~~~i~~~l~~~ 378 (382)
T PLN02605 360 LKLARPEAVFDIVHDLHEL 378 (382)
T ss_pred HHhcCCchHHHHHHHHHHH
Confidence 9988877766666555443
No 71
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.75 E-value=1.1e-17 Score=180.25 Aligned_cols=223 Identities=19% Similarity=0.257 Sum_probs=176.9
Q ss_pred HHhccCEEEecCC---chHHHhhCCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEEEEEccccccccc
Q 003758 41 VFSRVNVIVFPDY---TLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNEL 117 (797)
Q Consensus 41 ~~~~AD~VV~ps~---~l~~i~~gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl 117 (797)
.+...|.+|+.++ ..-.+...++++++.+||| .++. ..|.+.... ..+.+-..|++++++..+||
T Consensus 142 sL~~id~~IcVshtskentvlr~~L~p~kvsvIPn-Av~~---~~f~P~~~~-------~~S~~i~~ivv~sRLvyrKG- 209 (426)
T KOG1111|consen 142 SLANIDRIICVSHTSKENTVLRGALAPAKVSVIPN-AVVT---HTFTPDAAD-------KPSADIITIVVASRLVYRKG- 209 (426)
T ss_pred eecCCCcEEEEeecCCCceEEEeccCHhHeeeccc-eeec---cccccCccc-------cCCCCeeEEEEEeeeeeccc-
Confidence 5666777776542 2333467889999999999 6776 777663211 11223378999999987755
Q ss_pred cccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEec--ChhhHHHHHHHcCEE
Q 003758 118 SWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIV 195 (797)
Q Consensus 118 ~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG--~~edl~~~L~aADV~ 195 (797)
.+++++++..+. ++.|+++| +|+|+||.. ..++++.+++.+.+ +|.++| +++++.++|..-|||
T Consensus 210 ---iDll~~iIp~vc-------~~~p~vrf-ii~GDGPk~--i~lee~lEk~~l~~-rV~~lG~v~h~~Vr~vl~~G~IF 275 (426)
T KOG1111|consen 210 ---IDLLLEIIPSVC-------DKHPEVRF-IIIGDGPKR--IDLEEMLEKLFLQD-RVVMLGTVPHDRVRDVLVRGDIF 275 (426)
T ss_pred ---hHHHHHHHHHHH-------hcCCCeeE-EEecCCccc--chHHHHHHHhhccC-ceEEecccchHHHHHHHhcCcEE
Confidence 499999988875 45789996 999999997 99999999999998 999999 688999999999999
Q ss_pred EEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q 003758 196 LYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRL 275 (797)
Q Consensus 196 V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk 275 (797)
+.||..| .|+++++|||+||+|||++..||++|++-++ -.+....+++++++++.+++..-.. ..+...+
T Consensus 276 lntSlTE--afc~~ivEAaScGL~VVsTrVGGIpeVLP~d--~i~~~~~~~~dl~~~v~~ai~~~~~------~p~~~h~ 345 (426)
T KOG1111|consen 276 LNTSLTE--AFCMVIVEAASCGLPVVSTRVGGIPEVLPED--MITLGEPGPDDLVGAVEKAITKLRT------LPLEFHD 345 (426)
T ss_pred eccHHHH--HHHHHHHHHHhCCCEEEEeecCCccccCCcc--ceeccCCChHHHHHHHHHHHHHhcc------CchhHHH
Confidence 9999999 9999999999999999999999999999765 2335556788999999888864332 2345566
Q ss_pred HHHHhcHHHH-HHHHHHHHHHHhcC
Q 003758 276 HAKNMLALDC-VTRYARILENVLNF 299 (797)
Q Consensus 276 ~ak~~~s~e~-i~~Y~kLLe~lL~~ 299 (797)
..+++++++. ++...++|.++.+.
T Consensus 346 ~v~~~y~w~dVa~rTekvy~r~~~t 370 (426)
T KOG1111|consen 346 RVKKMYSWKDVAERTEKVYDRAATT 370 (426)
T ss_pred HHHHhccHHHHHHHHHHHHHHHhhc
Confidence 7777777755 67999999998874
No 72
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.73 E-value=1.4e-16 Score=175.73 Aligned_cols=246 Identities=15% Similarity=0.110 Sum_probs=159.8
Q ss_pred CCCCCEEEEEccchhhhhhhhhhhhhHHHHHHHHHHHHhccCEEEecCCchHHHhhCCCCCCEEEeCCCCCCchhhhhcc
Q 003758 5 FHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYS 84 (797)
Q Consensus 5 F~~IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~~~~~~AD~VV~ps~~l~~i~~gld~~ki~VIPnsGVDvw~ae~F~ 84 (797)
+...|+|+.++|.-..... .. ..+.......++++|.|++.+..+........ .++.+||| |||. +.|.
T Consensus 120 ~~~~~~Vyd~~D~~~~~~~--~~----~~~~~~e~~~~~~ad~vi~~S~~l~~~~~~~~-~~i~~i~n-gvd~---~~f~ 188 (373)
T cd04950 120 LQASLVVYDCVDDLSAFPG--GP----PELLEAERRLLKRADLVFTTSPSLYEAKRRLN-PNVVLVPN-GVDY---EHFA 188 (373)
T ss_pred cCCCeEEEEcccchhccCC--CC----HHHHHHHHHHHHhCCEEEECCHHHHHHHhhCC-CCEEEccc-ccCH---HHhh
Confidence 3457788888874322211 11 12224456689999999999877766554444 68999998 9998 6665
Q ss_pred cchhHH-HHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHH
Q 003758 85 KSHEKY-QLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQ 163 (797)
Q Consensus 85 ~s~~k~-slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Le 163 (797)
...... ..+. ....++++|+|+|++... ++.+.+.++. . ..++++| +++|.++.. ....
T Consensus 189 ~~~~~~~~~~~--~~~~~~~~i~y~G~l~~~----~d~~ll~~la-~----------~~p~~~~-vliG~~~~~--~~~~ 248 (373)
T cd04950 189 AARDPPPPPAD--LAALPRPVIGYYGAIAEW----LDLELLEALA-K----------ARPDWSF-VLIGPVDVS--IDPS 248 (373)
T ss_pred cccccCCChhH--HhcCCCCEEEEEeccccc----cCHHHHHHHH-H----------HCCCCEE-EEECCCcCc--cChh
Confidence 432111 0111 123456799999998763 3444433222 1 2378894 888987322 1111
Q ss_pred HHHHHcCCCCCeEEEec--ChhhHHHHHHHcCEEEEccCCCC---CCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeE
Q 003758 164 EVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVE---QGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQV 238 (797)
Q Consensus 164 ela~elgL~d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee---~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG 238 (797)
.....+ +|+++| +.+++..+|+.+|++++|+..++ .++|++++||||||+|||+++.+.+ +.... |
T Consensus 249 ---~~~~~~--nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~~---~~~~~-~ 319 (373)
T cd04950 249 ---ALLRLP--NVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPEV---RRYED-E 319 (373)
T ss_pred ---HhccCC--CEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHHH---HhhcC-c
Confidence 112233 699999 56899999999999999986432 2689999999999999999986544 44443 3
Q ss_pred EEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 003758 239 IFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILEN 295 (797)
Q Consensus 239 ~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLLe~ 295 (797)
.++.++|+++++++|..++.++.. ... ..+++.++++.|...++.+...+.+
T Consensus 320 ~~~~~~d~~~~~~ai~~~l~~~~~---~~~--~~~~~~~~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 320 VVLIADDPEEFVAAIEKALLEDGP---ARE--RRRLRLAAQNSWDARAAEMLEALQE 371 (373)
T ss_pred EEEeCCCHHHHHHHHHHHHhcCCc---hHH--HHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 444557999999999998766543 111 1222367777777778888866554
No 73
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.71 E-value=5.6e-16 Score=170.55 Aligned_cols=221 Identities=9% Similarity=0.085 Sum_probs=155.4
Q ss_pred HHhccCEEEecCCchHHH--hhCCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEEEE-Eccccccccc
Q 003758 41 VFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVV-VGSSFFYNEL 117 (797)
Q Consensus 41 ~~~~AD~VV~ps~~l~~i--~~gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vIL~-VGrl~~~KGl 117 (797)
.++++|.+++++...... ..|++++++.++++ +++. .|........++.++|++++++++++ .|+....
T Consensus 144 ~~~~ad~i~~~s~~~~~~l~~~gi~~~ki~v~G~-p~~~----~f~~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~--- 215 (380)
T PRK13609 144 VHREVDRYFVATDHVKKVLVDIGVPPEQVVETGI-PIRS----SFELKINPDIIYNKYQLCPNKKILLIMAGAHGVL--- 215 (380)
T ss_pred ccCCCCEEEECCHHHHHHHHHcCCChhHEEEECc-ccCh----HHcCcCCHHHHHHHcCCCCCCcEEEEEcCCCCCC---
Confidence 356899999987655443 45788888888754 5542 33322234457888999877655544 5654333
Q ss_pred cccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEE
Q 003758 118 SWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLY 197 (797)
Q Consensus 118 ~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~ 197 (797)
|+...+++++.. .+++++++++|.+.. ..+.++++++.++ + +|+++|..+++.++|+.||++|.
T Consensus 216 -k~~~~li~~l~~-----------~~~~~~viv~G~~~~-~~~~l~~~~~~~~--~-~v~~~g~~~~~~~l~~~aD~~v~ 279 (380)
T PRK13609 216 -GNVKELCQSLMS-----------VPDLQVVVVCGKNEA-LKQSLEDLQETNP--D-ALKVFGYVENIDELFRVTSCMIT 279 (380)
T ss_pred -cCHHHHHHHHhh-----------CCCcEEEEEeCCCHH-HHHHHHHHHhcCC--C-cEEEEechhhHHHHHHhccEEEe
Confidence 566777776531 257886555564321 2366777666554 4 79999988899999999999885
Q ss_pred ccCCCCCCccHHHHHHHHhCCcEEEcC-CCCh----hHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHH
Q 003758 198 GSSQVEQGFPSLIVRAMTFGIPVITPD-FPII----KEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASA 272 (797)
Q Consensus 198 PS~~Ee~GFPlvLLEAMA~G~PVIasd-~gGi----~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~ 272 (797)
+ +.|++++|||+||+|||+++ .+|. .+++.+. |+.+...|+++++++|..+++|++. +.+|+++
T Consensus 280 ----~--~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~--G~~~~~~~~~~l~~~i~~ll~~~~~---~~~m~~~ 348 (380)
T PRK13609 280 ----K--PGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK--GAAVVIRDDEEVFAKTEALLQDDMK---LLQMKEA 348 (380)
T ss_pred ----C--CCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC--CcEEEECCHHHHHHHHHHHHCCHHH---HHHHHHH
Confidence 3 55899999999999999986 4542 2344433 5555568999999999999999887 7889999
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHH
Q 003758 273 GRLHAKNMLALDCVTRYARILENV 296 (797)
Q Consensus 273 aRk~ak~~~s~e~i~~Y~kLLe~l 296 (797)
+++.+..+....+++.+.+++...
T Consensus 349 ~~~~~~~~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 349 MKSLYLPEPADHIVDDILAENHVE 372 (380)
T ss_pred HHHhCCCchHHHHHHHHHHhhhhh
Confidence 988887776666677777776554
No 74
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.70 E-value=6.2e-16 Score=166.74 Aligned_cols=205 Identities=17% Similarity=0.221 Sum_probs=152.5
Q ss_pred HhccCEEEecCCchHHHhhCCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEEEEEccccccccccccH
Q 003758 42 FSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDY 121 (797)
Q Consensus 42 ~~~AD~VV~ps~~l~~i~~gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~ 121 (797)
+..+|.|++++...... ++..++.+||| |+|. +.+.... . +.+++++++.++|+++|+.... |+.
T Consensus 132 ~~~~~~vi~~s~~~~~~---~~~~~~~~i~n-~v~~---~~~~~~~---~-~~~~~~~~~~~~i~~~~g~~~~----~~~ 196 (350)
T cd03785 132 ARFADRVALSFPETAKY---FPKDKAVVTGN-PVRE---EILALDR---E-RARLGLRPGKPTLLVFGGSQGA----RAI 196 (350)
T ss_pred HHhhCEEEEcchhhhhc---CCCCcEEEECC-CCch---HHhhhhh---h-HHhcCCCCCCeEEEEECCcHhH----HHH
Confidence 45588888876554332 56678999998 8986 4443221 1 6778888888888888765444 333
Q ss_pred H-HHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccC
Q 003758 122 A-VAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSS 200 (797)
Q Consensus 122 ~-lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~ 200 (797)
. .+++++..+. .+++++++++|.+ .. +.+++.++++ .+ +|++.|..+++..+|+.||++|.+|
T Consensus 197 ~~~l~~a~~~l~---------~~~~~~~~i~G~g-~~--~~l~~~~~~~--~~-~v~~~g~~~~~~~~l~~ad~~v~~s- 260 (350)
T cd03785 197 NEAVPEALAELL---------RKRLQVIHQTGKG-DL--EEVKKAYEEL--GV-NYEVFPFIDDMAAAYAAADLVISRA- 260 (350)
T ss_pred HHHHHHHHHHhh---------ccCeEEEEEcCCc-cH--HHHHHHHhcc--CC-CeEEeehhhhHHHHHHhcCEEEECC-
Confidence 3 4456665552 1456656788888 32 7788877765 34 7999998899999999999999855
Q ss_pred CCCCCccHHHHHHHHhCCcEEEcCCCC--------hhHhhhcCCeEEEEcCC--CHHHHHHHHHHHHhCcccHHHHHHHH
Q 003758 201 QVEQGFPSLIVRAMTFGIPVITPDFPI--------IKEYVAEGAQVIFFQKD--NPEGLSRAFSLFISNGKLSKFARTVA 270 (797)
Q Consensus 201 ~Ee~GFPlvLLEAMA~G~PVIasd~gG--------i~EiI~Dg~nG~Lfd~~--D~eeLAeaI~~LLedpel~~~r~~m~ 270 (797)
| +++++|||++|+|||+++.++ ..+.+.+..+|++++++ |+++|+++|..++++++. ++.|+
T Consensus 261 ----g-~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~---~~~~~ 332 (350)
T cd03785 261 ----G-ASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPER---LKAMA 332 (350)
T ss_pred ----C-HhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHH---HHHHH
Confidence 2 689999999999999987653 35677777889999887 899999999999998876 88999
Q ss_pred HHHHHHHHHhcHHHH
Q 003758 271 SAGRLHAKNMLALDC 285 (797)
Q Consensus 271 ~~aRk~ak~~~s~e~ 285 (797)
.+++++++.+...++
T Consensus 333 ~~~~~~~~~~~~~~i 347 (350)
T cd03785 333 EAARSLARPDAAERI 347 (350)
T ss_pred HHHHhcCCCCHHHHH
Confidence 999988776544443
No 75
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.70 E-value=1.2e-15 Score=170.01 Aligned_cols=222 Identities=13% Similarity=0.116 Sum_probs=160.2
Q ss_pred HhccCEEEecCCchHHH--hhCCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEE-EEEcccccccccc
Q 003758 42 FSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVV-VVVGSSFFYNELS 118 (797)
Q Consensus 42 ~~~AD~VV~ps~~l~~i--~~gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vI-L~VGrl~~~KGl~ 118 (797)
...+|.+++++...... ..|++.+++.++++ ||+. .|....++...+.++|++++++++ ++.|++...
T Consensus 145 ~~~~d~~~v~s~~~~~~l~~~gi~~~ki~v~Gi-Pv~~----~f~~~~~~~~~~~~~~l~~~~~~ilv~~G~lg~~---- 215 (391)
T PRK13608 145 TPYSTRYYVATKETKQDFIDVGIDPSTVKVTGI-PIDN----KFETPIDQKQWLIDNNLDPDKQTILMSAGAFGVS---- 215 (391)
T ss_pred cCCCCEEEECCHHHHHHHHHcCCCHHHEEEECe-ecCh----HhcccccHHHHHHHcCCCCCCCEEEEECCCcccc----
Confidence 46788888887655433 46888889998765 6763 343333355677889998766554 557765544
Q ss_pred ccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEc
Q 003758 119 WDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYG 198 (797)
Q Consensus 119 Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~P 198 (797)
|++..+++++. +..+++++++++|.+. ...+++.+..+..+ +|.+.|..+++.++|+.||++|.
T Consensus 216 k~~~~li~~~~----------~~~~~~~~vvv~G~~~----~l~~~l~~~~~~~~-~v~~~G~~~~~~~~~~~aDl~I~- 279 (391)
T PRK13608 216 KGFDTMITDIL----------AKSANAQVVMICGKSK----ELKRSLTAKFKSNE-NVLILGYTKHMNEWMASSQLMIT- 279 (391)
T ss_pred hhHHHHHHHHH----------hcCCCceEEEEcCCCH----HHHHHHHHHhccCC-CeEEEeccchHHHHHHhhhEEEe-
Confidence 55677777642 1235788666667543 22233333344444 79999998899999999999997
Q ss_pred cCCCCCCccHHHHHHHHhCCcEEEcCC-CC----hhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q 003758 199 SSQVEQGFPSLIVRAMTFGIPVITPDF-PI----IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAG 273 (797)
Q Consensus 199 S~~Ee~GFPlvLLEAMA~G~PVIasd~-gG----i~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~a 273 (797)
. ++|++++|||++|+|+|+++. ++ ...++.+...|++ .+|+++++++|..+++|++. +.+|++++
T Consensus 280 ---k--~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~--~~~~~~l~~~i~~ll~~~~~---~~~m~~~~ 349 (391)
T PRK13608 280 ---K--PGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKI--ADTPEEAIKIVASLTNGNEQ---LTNMISTM 349 (391)
T ss_pred ---C--CchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEE--eCCHHHHHHHHHHHhcCHHH---HHHHHHHH
Confidence 3 558999999999999999863 33 3445566655655 46999999999999999876 88999999
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHhc
Q 003758 274 RLHAKNMLALDCVTRYARILENVLN 298 (797)
Q Consensus 274 Rk~ak~~~s~e~i~~Y~kLLe~lL~ 298 (797)
++.++.+....+++.+.+++..+..
T Consensus 350 ~~~~~~~s~~~i~~~l~~l~~~~~~ 374 (391)
T PRK13608 350 EQDKIKYATQTICRDLLDLIGHSSQ 374 (391)
T ss_pred HHhcCCCCHHHHHHHHHHHhhhhhh
Confidence 9999887777888899888876554
No 76
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.69 E-value=1.7e-15 Score=164.95 Aligned_cols=213 Identities=14% Similarity=0.112 Sum_probs=154.6
Q ss_pred HhccCEEEecCCchHHHhhCCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEEEEEccccccccccccH
Q 003758 42 FSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDY 121 (797)
Q Consensus 42 ~~~AD~VV~ps~~l~~i~~gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~ 121 (797)
+..+|.+++..... +.. .+..++.+||| |||. +.+... ..+.+++++.+.++|+++|+....+++ .
T Consensus 134 ~~~~d~ii~~~~~~--~~~-~~~~~i~vi~n-~v~~---~~~~~~----~~~~~~~~~~~~~~i~~~gg~~~~~~~---~ 199 (357)
T PRK00726 134 ARFAKKVATAFPGA--FPE-FFKPKAVVTGN-PVRE---EILALA----APPARLAGREGKPTLLVVGGSQGARVL---N 199 (357)
T ss_pred HHHhchheECchhh--hhc-cCCCCEEEECC-CCCh---Hhhccc----chhhhccCCCCCeEEEEECCcHhHHHH---H
Confidence 45677777665422 222 67789999998 8986 444322 123456777777888888875444221 2
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCC
Q 003758 122 AVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQ 201 (797)
Q Consensus 122 ~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~ 201 (797)
..+++|+..+. + .+ .. ++++|+++. +.+.+..+ +++ +|.+.|..+++..+|+.||++|.+|
T Consensus 200 ~~l~~a~~~~~-------~-~~-~~-~~~~G~g~~---~~~~~~~~-~~~---~v~~~g~~~~~~~~~~~~d~~i~~~-- 260 (357)
T PRK00726 200 EAVPEALALLP-------E-AL-QV-IHQTGKGDL---EEVRAAYA-AGI---NAEVVPFIDDMAAAYAAADLVICRA-- 260 (357)
T ss_pred HHHHHHHHHhh-------h-Cc-EE-EEEcCCCcH---HHHHHHhh-cCC---cEEEeehHhhHHHHHHhCCEEEECC--
Confidence 33347776552 1 12 33 578898874 55555454 555 3899998889999999999999854
Q ss_pred CCCCccHHHHHHHHhCCcEEEcCCCC--------hhHhhhcCCeEEEEcCCC--HHHHHHHHHHHHhCcccHHHHHHHHH
Q 003758 202 VEQGFPSLIVRAMTFGIPVITPDFPI--------IKEYVAEGAQVIFFQKDN--PEGLSRAFSLFISNGKLSKFARTVAS 271 (797)
Q Consensus 202 Ee~GFPlvLLEAMA~G~PVIasd~gG--------i~EiI~Dg~nG~Lfd~~D--~eeLAeaI~~LLedpel~~~r~~m~~ 271 (797)
.+.+++|||++|+|||++..++ ..+.+.+..+|++++++| +++|+++|.++++|++. +++|++
T Consensus 261 ----g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~---~~~~~~ 333 (357)
T PRK00726 261 ----GASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPER---LEAMAE 333 (357)
T ss_pred ----CHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHH---HHHHHH
Confidence 2689999999999999987642 346777788899999888 99999999999999887 899999
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHH
Q 003758 272 AGRLHAKNMLALDCVTRYARILE 294 (797)
Q Consensus 272 ~aRk~ak~~~s~e~i~~Y~kLLe 294 (797)
++++.+++.....+++.+.+++.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 334 AARALGKPDAAERLADLIEELAR 356 (357)
T ss_pred HHHhcCCcCHHHHHHHHHHHHhh
Confidence 99999887777777777776653
No 77
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.68 E-value=1.4e-16 Score=192.05 Aligned_cols=214 Identities=13% Similarity=0.082 Sum_probs=156.3
Q ss_pred CCEEEeCCCCCCchhhhhcccchh-------HHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhh
Q 003758 65 GNFFVIPGSPADVWAVEAYSKSHE-------KYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYAR 137 (797)
Q Consensus 65 ~ki~VIPnsGVDvw~ae~F~~s~~-------k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~ 137 (797)
.++.++|+ |||. +.|..... ...+++.++ ++++|++||++... ||+..+++|++.++...+.
T Consensus 242 ~~I~viP~-GID~---~~f~~~~~~~~~~~~~~~lr~~~~---~~~lIl~VgRLd~~----KGi~~lL~Afe~lL~~~P~ 310 (797)
T PLN03063 242 TRVAVFPI-GIDP---ERFINTCELPEVKQHMKELKRFFA---GRKVILGVDRLDMI----KGIPQKYLAFEKFLEENPE 310 (797)
T ss_pred EEEEEEec-ccCH---HHHHHHhcChhHHHHHHHHHHhcC---CCeEEEEecccccc----cCHHHHHHHHHHHHHhCcc
Confidence 46789998 9998 66643211 113343433 56799999998776 5669999999999865543
Q ss_pred hccCCCCcEEEEEEeCCCC--CCHHHHHHHHHHcC--CCC-------CeEEEec---ChhhHHHHHHHcCEEEEccCCCC
Q 003758 138 RNSVEGSFKFVFLCGNSTD--GYNDALQEVASRLG--LLE-------HSVRHYG---FNGDVNGVLLMADIVLYGSSQVE 203 (797)
Q Consensus 138 lk~~~pdvkfLIIvG~g~~--~Y~e~Leela~elg--L~d-------~~V~flG---~~edl~~~L~aADV~V~PS~~Ee 203 (797)
.+ .++.++.++|.... ...+.+++.++++. +.. ..|++++ +.+++..+|+.|||+|+||..|
T Consensus 311 ~~---~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSlrE- 386 (797)
T PLN03063 311 WR---DKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSLRD- 386 (797)
T ss_pred cc---CcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCcccc-
Confidence 32 23554334433211 11245555555542 211 0144444 5688999999999999999999
Q ss_pred CCccHHHHHHHHhCCc----EEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Q 003758 204 QGFPSLIVRAMTFGIP----VITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKN 279 (797)
Q Consensus 204 ~GFPlvLLEAMA~G~P----VIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~ 279 (797)
|||++++||||||+| +|+|..+|.++.+ +.+|++++|.|+++++++|..++..+. ++++...+..++++.+
T Consensus 387 -GmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l--~~~allVnP~D~~~lA~AI~~aL~m~~--~er~~r~~~~~~~v~~ 461 (797)
T PLN03063 387 -GMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL--GAGALLVNPWNITEVSSAIKEALNMSD--EERETRHRHNFQYVKT 461 (797)
T ss_pred -ccCcchhhHheeecCCCCCEEeeCCcCchhhh--cCCeEEECCCCHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhhhh
Confidence 999999999999999 9999999999987 345999999999999999999999443 2277788889999999
Q ss_pred hcHHHHHHHHHHHHHHHhc
Q 003758 280 MLALDCVTRYARILENVLN 298 (797)
Q Consensus 280 ~~s~e~i~~Y~kLLe~lL~ 298 (797)
+.+...++.+...|+.+..
T Consensus 462 ~~~~~Wa~~fl~~l~~~~~ 480 (797)
T PLN03063 462 HSAQKWADDFMSELNDIIV 480 (797)
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 9888888888887776654
No 78
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=6.1e-14 Score=142.60 Aligned_cols=223 Identities=22% Similarity=0.347 Sum_probs=163.3
Q ss_pred cCEEEecCCchHH-HhhCCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCC--EEEEEEccccccccccccH
Q 003758 45 VNVIVFPDYTLPM-LYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDE--IVVVVVGSSFFYNELSWDY 121 (797)
Q Consensus 45 AD~VV~ps~~l~~-i~~gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~--~vIL~VGrl~~~KGl~Kn~ 121 (797)
.+.++..+..... +..-....++.++|+ +++. ..+... ..++..+. .+++++|++... |++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~--------~~~~~~~~~~~~i~~~g~~~~~----k~~ 214 (381)
T COG0438 151 ADRVIAVSPALKELLEALGVPNKIVVIPN-GIDT---EKFAPA--------RIGLLPEGGKFVVLYVGRLDPE----KGL 214 (381)
T ss_pred ccEEEECCHHHHHHHHHhCCCCCceEecC-CcCH---HHcCcc--------ccCCCcccCceEEEEeeccChh----cCH
Confidence 5666666544322 222222236778887 7776 333221 23333443 699999996664 677
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecCh--hhHHHHHHHcCEEEEcc
Q 003758 122 AVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN--GDVNGVLLMADIVLYGS 199 (797)
Q Consensus 122 ~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~--edl~~~L~aADV~V~PS 199 (797)
..+++++..+.. ..+++. ++++|.++.. .+.+...+.+.+..+ .|.+.|.. +++..+++.||++++||
T Consensus 215 ~~~i~~~~~~~~-------~~~~~~-~~~~g~~~~~-~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~~~~~v~ps 284 (381)
T COG0438 215 DLLIEAAAKLKK-------RGPDIK-LVIVGDGPER-REELEKLAKKLGLED-NVKFLGYVPDEELAELLASADVFVLPS 284 (381)
T ss_pred HHHHHHHHHhhh-------hcCCeE-EEEEcCCCcc-HHHHHHHHHHhCCCC-cEEEecccCHHHHHHHHHhCCEEEecc
Confidence 999999988842 233467 5888888762 256666777777766 79999953 47888999999999999
Q ss_pred CCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Q 003758 200 SQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKN 279 (797)
Q Consensus 200 ~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~ 279 (797)
..| +||++++|||++|+|||+++.++..+++.++.+|++++..+++++++++..++++++. ++.+...+++.+..
T Consensus 285 ~~e--~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~ 359 (381)
T COG0438 285 LSE--GFGLVLLEAMAAGTPVIASDVGGIPEVVEDGETGLLVPPGDVEELADALEQLLEDPEL---REELGEAARERVEE 359 (381)
T ss_pred ccc--cchHHHHHHHhcCCcEEECCCCChHHHhcCCCceEecCCCCHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHH
Confidence 887 9999999999999999999999999999998778877777899999999999998854 67777655566545
Q ss_pred hcHHHH-HHHHHHHHHHHhc
Q 003758 280 MLALDC-VTRYARILENVLN 298 (797)
Q Consensus 280 ~~s~e~-i~~Y~kLLe~lL~ 298 (797)
.++++. ...+.+++.....
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 360 EFSWERIAEQLLELYEELLA 379 (381)
T ss_pred hcCHHHHHHHHHHHHHHHHh
Confidence 555544 6788888877653
No 79
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.66 E-value=2.3e-15 Score=162.21 Aligned_cols=204 Identities=17% Similarity=0.194 Sum_probs=145.7
Q ss_pred HHhccCEEEecCCchHHHhhCCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEEEEEcccccccccccc
Q 003758 41 VFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWD 120 (797)
Q Consensus 41 ~~~~AD~VV~ps~~l~~i~~gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn 120 (797)
.+..+|.+++.+......+ +..+|+| |++. ..+.... .+..++++++.++|+++|+.... |+
T Consensus 132 ~~~~~d~ii~~~~~~~~~~------~~~~i~n-~v~~---~~~~~~~----~~~~~~~~~~~~~i~~~gg~~~~----~~ 193 (348)
T TIGR01133 132 LSRFAKKVLISFPGAKDHF------EAVLVGN-PVRQ---EIRSLPV----PRERFGLREGKPTILVLGGSQGA----KI 193 (348)
T ss_pred HHHHhCeeEECchhHhhcC------CceEEcC-CcCH---HHhcccc----hhhhcCCCCCCeEEEEECCchhH----HH
Confidence 3456888888765543222 2378887 8885 3332221 23457888888899999864433 33
Q ss_pred HH-HHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEcc
Q 003758 121 YA-VAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGS 199 (797)
Q Consensus 121 ~~-lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS 199 (797)
.. .+++++..+. + .++++++++|++.. +.+++.++++++.+ .|.+. .. ++..+|+.||++|.+|
T Consensus 194 ~~~~l~~a~~~l~-------~--~~~~~~~~~g~~~~---~~l~~~~~~~~l~~-~v~~~-~~-~~~~~l~~ad~~v~~~ 258 (348)
T TIGR01133 194 LNELVPKALAKLA-------E--KGIQIVHQTGKNDL---EKVKNVYQELGIEA-IVTFI-DE-NMAAAYAAADLVISRA 258 (348)
T ss_pred HHHHHHHHHHHHh-------h--cCcEEEEECCcchH---HHHHHHHhhCCceE-EecCc-cc-CHHHHHHhCCEEEECC
Confidence 33 3446665552 1 24565556665532 67888888888765 55565 33 8999999999999854
Q ss_pred CCCCCCccHHHHHHHHhCCcEEEcCCCC-------hhHhhhcCCeEEEEcCCC--HHHHHHHHHHHHhCcccHHHHHHHH
Q 003758 200 SQVEQGFPSLIVRAMTFGIPVITPDFPI-------IKEYVAEGAQVIFFQKDN--PEGLSRAFSLFISNGKLSKFARTVA 270 (797)
Q Consensus 200 ~~Ee~GFPlvLLEAMA~G~PVIasd~gG-------i~EiI~Dg~nG~Lfd~~D--~eeLAeaI~~LLedpel~~~r~~m~ 270 (797)
| |++++|||++|+|||+++.++ ..+++.++.+|++++++| +++|+++|..+++|++. +++|+
T Consensus 259 -----g-~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~---~~~~~ 329 (348)
T TIGR01133 259 -----G-ASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPAN---LEAMA 329 (348)
T ss_pred -----C-hhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHHH---HHHHH
Confidence 3 789999999999999988754 456888899999998876 99999999999999887 88899
Q ss_pred HHHHHHHHHhcHHHHH
Q 003758 271 SAGRLHAKNMLALDCV 286 (797)
Q Consensus 271 ~~aRk~ak~~~s~e~i 286 (797)
+++++++......+++
T Consensus 330 ~~~~~~~~~~~~~~i~ 345 (348)
T TIGR01133 330 EAARKLAKPDAAKRIA 345 (348)
T ss_pred HHHHhcCCccHHHHHH
Confidence 9998887766555544
No 80
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.63 E-value=5.3e-15 Score=167.45 Aligned_cols=236 Identities=17% Similarity=0.142 Sum_probs=161.2
Q ss_pred HHhccCEEEecCCchHHH----hhCCCCCCEEEeCCCCCCchhhhhccc-----c-hhHHHHHHHcCCCCCCEEEEEEcc
Q 003758 41 VFSRVNVIVFPDYTLPML----YSVLDAGNFFVIPGSPADVWAVEAYSK-----S-HEKYQLRKENGFLKDEIVVVVVGS 110 (797)
Q Consensus 41 ~~~~AD~VV~ps~~l~~i----~~gld~~ki~VIPnsGVDvw~ae~F~~-----s-~~k~slR~klGL~~d~~vIL~VGr 110 (797)
....++.++++++..... ...++...+.+... ++|. ..+.. . ..+...|...++...+..+..+-+
T Consensus 206 ~~~~~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y~-ei~~---s~~~~~~~~~~~~~~~~~r~~~~v~~~d~~~~siN~ 281 (495)
T KOG0853|consen 206 TTGLAWKILVNSYFTKRQFKATFVSLSNSDITSTYP-EIDG---SWFTYGQYESHLELRLPVRLYRGVSGIDRFFPSINR 281 (495)
T ss_pred hhhccceEecchhhhhhhhhhhhhhcCCCCcceeec-cccc---hhccccccccchhcccccceeeeecccceEeeeeee
Confidence 566778888776544333 22344333433332 4554 33221 1 112233444566665666666644
Q ss_pred ccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCC--------CCCCHHHHHHHHHHcCCCCCeEEEecCh
Q 003758 111 SFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNS--------TDGYNDALQEVASRLGLLEHSVRHYGFN 182 (797)
Q Consensus 111 l~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g--------~~~Y~e~Leela~elgL~d~~V~flG~~ 182 (797)
++++ ||+.+++.++..+....++ ...++.+ ++++|+. +..|...+.++++++++....|.|+...
T Consensus 282 -~~pg---kd~~l~l~a~~~~~~~i~~--~~~~~~h-l~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~ 354 (495)
T KOG0853|consen 282 -FEPG---KDQDLALPAFTLLHDSIPE--PSISSEH-LVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPST 354 (495)
T ss_pred -cCCC---CCceeehhhHHhhhcccCC--CCCCceE-EEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCC
Confidence 4443 7889999999888655443 1235566 5777732 2225778888999999854267776744
Q ss_pred hh--HHHHHHHcCEEEE-ccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcCCCHH---HHHHHHHHH
Q 003758 183 GD--VNGVLLMADIVLY-GSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPE---GLSRAFSLF 256 (797)
Q Consensus 183 ed--l~~~L~aADV~V~-PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~e---eLAeaI~~L 256 (797)
.+ ...+++.+.++++ |.. | .||++++|||+||+||||++.||..|+|.++.+|+++++ +.+ .++++|.++
T Consensus 355 ~~~~~yrl~adt~~v~~qPa~-E--~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~dp-~~e~~~~~a~~~~kl 430 (495)
T KOG0853|consen 355 TRVAKYRLAADTKGVLYQPAN-E--HFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLIDP-GQEAVAELADALLKL 430 (495)
T ss_pred chHHHHHHHHhcceEEecCCC-C--CccceeHHHHhcCCCEEEecCCCceEEEEcCCcceeeCC-chHHHHHHHHHHHHH
Confidence 44 4445555555555 555 7 999999999999999999999999999999999999998 555 699999999
Q ss_pred HhCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHHH
Q 003758 257 ISNGKLSKFARTVASAGRLHAKNMLALDC-VTRYARILE 294 (797)
Q Consensus 257 Ledpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y~kLLe 294 (797)
..||++ +.+|+++|++++++.|++.. .++..+++.
T Consensus 431 ~~~p~l---~~~~~~~G~~rV~e~fs~~~~~~ri~~~~~ 466 (495)
T KOG0853|consen 431 RRDPEL---WARMGKNGLKRVKEMFSWQHYSERIASVLG 466 (495)
T ss_pred hcCHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHhH
Confidence 999998 89999999999999888844 234444444
No 81
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.61 E-value=5.9e-15 Score=176.94 Aligned_cols=209 Identities=11% Similarity=0.138 Sum_probs=149.9
Q ss_pred CEEEeCCCCCCchhhhhcccchhH-------HHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhh
Q 003758 66 NFFVIPGSPADVWAVEAYSKSHEK-------YQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARR 138 (797)
Q Consensus 66 ki~VIPnsGVDvw~ae~F~~s~~k-------~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~l 138 (797)
++.++|+ |||+ +.|.+.... ..+|..+ .++++|++|||+... ||+..+++|+..++...+..
T Consensus 229 ~v~v~p~-GID~---~~f~~~~~~~~~~~~~~~lr~~~---~~~~~il~VgRl~~~----Kgi~~~l~A~~~ll~~~p~~ 297 (726)
T PRK14501 229 RVDAFPM-GIDY---DKFHNSAQDPEVQEEIRRLRQDL---RGRKIILSIDRLDYT----KGIPRRLLAFERFLEKNPEW 297 (726)
T ss_pred EEEEEEC-eEcH---HHHHHHhcCchHHHHHHHHHHHc---CCCEEEEEecCcccc----cCHHHHHHHHHHHHHhCccc
Confidence 5788998 9998 777543211 1233332 467799999998877 56699999999997655433
Q ss_pred ccCCCCcEEEEEEeCCC----CCC---HHHHHHHHHHcC-------CCCCeEEEec--ChhhHHHHHHHcCEEEEccCCC
Q 003758 139 NSVEGSFKFVFLCGNST----DGY---NDALQEVASRLG-------LLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQV 202 (797)
Q Consensus 139 k~~~pdvkfLIIvG~g~----~~Y---~e~Leela~elg-------L~d~~V~flG--~~edl~~~L~aADV~V~PS~~E 202 (797)
+ .++++ +++|.+. ..| ...+.+++.+.+ ..+ .+.+.| +.+++..+|+.||++|+||..|
T Consensus 298 ~---~~v~l-v~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~p-v~~~~~~~~~~~l~~ly~~aDv~v~~S~~E 372 (726)
T PRK14501 298 R---GKVRL-VQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTP-IHYFYRSLPFEELVALYRAADVALVTPLRD 372 (726)
T ss_pred c---CCEEE-EEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcce-EEEEeCCCCHHHHHHHHHhccEEEeccccc
Confidence 2 35775 5555221 111 223333333222 111 344555 6789999999999999999999
Q ss_pred CCCccHHHHHHHHhC-----CcEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Q 003758 203 EQGFPSLIVRAMTFG-----IPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHA 277 (797)
Q Consensus 203 e~GFPlvLLEAMA~G-----~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~a 277 (797)
|||++++|||||| .||++...|+.++++ .|++++|.|+++++++|.+++.++.. .+.....++++++
T Consensus 373 --G~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~----~~llv~P~d~~~la~ai~~~l~~~~~--e~~~r~~~~~~~v 444 (726)
T PRK14501 373 --GMNLVAKEYVASRTDGDGVLILSEMAGAAAELA----EALLVNPNDIEGIAAAIKRALEMPEE--EQRERMQAMQERL 444 (726)
T ss_pred --ccCcccceEEEEcCCCCceEEEecccchhHHhC----cCeEECCCCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHH
Confidence 9999999999995 466666677777765 38999999999999999999987642 2455556789999
Q ss_pred HHhcHHHHHHHHHHHHHHHhc
Q 003758 278 KNMLALDCVTRYARILENVLN 298 (797)
Q Consensus 278 k~~~s~e~i~~Y~kLLe~lL~ 298 (797)
.++.+...++.|.+.|.++..
T Consensus 445 ~~~~~~~w~~~~l~~l~~~~~ 465 (726)
T PRK14501 445 RRYDVHKWASDFLDELREAAE 465 (726)
T ss_pred HhCCHHHHHHHHHHHHHHHHh
Confidence 888877889999998888754
No 82
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=5.1e-13 Score=152.76 Aligned_cols=194 Identities=18% Similarity=0.160 Sum_probs=153.9
Q ss_pred hhHHHHHHHcCCCC--CCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHH
Q 003758 87 HEKYQLRKENGFLK--DEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQE 164 (797)
Q Consensus 87 ~~k~slR~klGL~~--d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Lee 164 (797)
.++..+++.+|++. +.+++.++||+..+||+ +.+++++..+++. .++ +++.|.|...+.+.+..
T Consensus 277 ~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~----dl~~~~i~~~l~~---------~~~-~vilG~gd~~le~~~~~ 342 (487)
T COG0297 277 ENKVALQERLGLDVDLPGPLFGFVSRLTAQKGL----DLLLEAIDELLEQ---------GWQ-LVLLGTGDPELEEALRA 342 (487)
T ss_pred HHHHHHHHHhCCCCCCCCcEEEEeeccccccch----hHHHHHHHHHHHh---------Cce-EEEEecCcHHHHHHHHH
Confidence 34567888999873 56899999999887555 9999999999742 277 58999996667788888
Q ss_pred HHHHcCCCCCeEEEec-ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhc--------C
Q 003758 165 VASRLGLLEHSVRHYG-FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE--------G 235 (797)
Q Consensus 165 la~elgL~d~~V~flG-~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~D--------g 235 (797)
+++++.. . .....| ...-...+++.+|++++||++| +||++=++||+.|+++|+..+||+++.|.+ .
T Consensus 343 la~~~~~-~-~~~~i~~~~~la~~i~agaD~~lmPSrfE--PcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~ 418 (487)
T COG0297 343 LASRHPG-R-VLVVIGYDEPLAHLIYAGADVILMPSRFE--PCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGV 418 (487)
T ss_pred HHHhcCc-e-EEEEeeecHHHHHHHHhcCCEEEeCCcCc--CCcHHHHHHHHcCCcceEcccCCccceecCccchhccCc
Confidence 8886654 2 334445 4455788999999999999999 999999999999999999999999999986 4
Q ss_pred CeEEEEcCCCHHHHHHHHHHHHhCcccHHH-HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCC
Q 003758 236 AQVIFFQKDNPEGLSRAFSLFISNGKLSKF-ARTVASAGRLHAKNMLALDCVTRYARILENVLNFP 300 (797)
Q Consensus 236 ~nG~Lfd~~D~eeLAeaI~~LLedpel~~~-r~~m~~~aRk~ak~~~s~e~i~~Y~kLLe~lL~~p 300 (797)
.+|++|.+.++++|+.+|.+++.-....+. .+.+..++-. .+++|...+..|.++|+.++..+
T Consensus 419 gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~--~d~sw~~sa~~y~~lY~~~~~~~ 482 (487)
T COG0297 419 GTGFLFLQTNPDHLANALRRALVLYRAPPLLWRKVQPNAMG--ADFSWDLSAKEYVELYKPLLSKP 482 (487)
T ss_pred eeEEEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcc--cccCchhHHHHHHHHHHHHhccc
Confidence 789999999999999999988763322111 4444444433 57777788999999999998754
No 83
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.52 E-value=8.3e-13 Score=144.92 Aligned_cols=223 Identities=14% Similarity=0.161 Sum_probs=142.1
Q ss_pred HHhccCEEEecCCchHHHhhCCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEEEEE-ccccccccccc
Q 003758 41 VFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVV-GSSFFYNELSW 119 (797)
Q Consensus 41 ~~~~AD~VV~ps~~l~~i~~gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vIL~V-Grl~~~KGl~K 119 (797)
..+.+|.|++++......+..... ++.++++ ++.. . ......+...+++++++++.++|+++ |+.... ..+
T Consensus 131 ~~~~~d~i~~~~~~~~~~~~~~g~-~~~~~G~-p~~~---~-~~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~--~~~ 202 (380)
T PRK00025 131 IAKATDHVLALFPFEAAFYDKLGV-PVTFVGH-PLAD---A-IPLLPDRAAARARLGLDPDARVLALLPGSRGQE--IKR 202 (380)
T ss_pred HHHHHhhheeCCccCHHHHHhcCC-CeEEECc-CHHH---h-cccccChHHHHHHcCCCCCCCEEEEECCCCHHH--HHH
Confidence 456678888776554444332221 2555554 3321 1 11112245677889998777665544 432211 112
Q ss_pred cHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeC-CCCCCHHHHHHHHHHc-CCCCCeEEEecChhhHHHHHHHcCEEEE
Q 003758 120 DYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGN-STDGYNDALQEVASRL-GLLEHSVRHYGFNGDVNGVLLMADIVLY 197 (797)
Q Consensus 120 n~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~-g~~~Y~e~Leela~el-gL~d~~V~flG~~edl~~~L~aADV~V~ 197 (797)
....+++++..+. +..+++++ +++|. +.. .+.+++.+.++ ++. +.+.. .++..+|+.||++|.
T Consensus 203 ~~~~l~~a~~~l~-------~~~~~~~~-ii~~~~~~~--~~~~~~~~~~~~~~~---v~~~~--~~~~~~~~~aDl~v~ 267 (380)
T PRK00025 203 LLPPFLKAAQLLQ-------QRYPDLRF-VLPLVNPKR--REQIEEALAEYAGLE---VTLLD--GQKREAMAAADAALA 267 (380)
T ss_pred HHHHHHHHHHHHH-------HhCCCeEE-EEecCChhh--HHHHHHHHhhcCCCC---eEEEc--ccHHHHHHhCCEEEE
Confidence 2466677776663 23467885 55554 433 36777777766 553 55544 479999999999999
Q ss_pred ccCCCCCCccHHHHHHHHhCCcEEEc-----------------CCCChhHhhhcCC--eEEEEcCCCHHHHHHHHHHHHh
Q 003758 198 GSSQVEQGFPSLIVRAMTFGIPVITP-----------------DFPIIKEYVAEGA--QVIFFQKDNPEGLSRAFSLFIS 258 (797)
Q Consensus 198 PS~~Ee~GFPlvLLEAMA~G~PVIas-----------------d~gGi~EiI~Dg~--nG~Lfd~~D~eeLAeaI~~LLe 258 (797)
+| |.+.+|||++|+|||+. +.+++++++.++. .+++.+..|+++|++++..+++
T Consensus 268 ~s-------G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~ 340 (380)
T PRK00025 268 AS-------GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLA 340 (380)
T ss_pred Cc-------cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhc
Confidence 76 56778999999999976 4556677777764 4567777899999999999999
Q ss_pred CcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHh
Q 003758 259 NGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVL 297 (797)
Q Consensus 259 dpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLLe~lL 297 (797)
|++. +++|++++++..+.. ....++...+++.+++
T Consensus 341 ~~~~---~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 341 DGAR---RQALLEGFTELHQQL-RCGADERAAQAVLELL 375 (380)
T ss_pred CHHH---HHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHh
Confidence 9987 788888876555554 3334445555554443
No 84
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.48 E-value=1.8e-12 Score=141.55 Aligned_cols=217 Identities=11% Similarity=0.039 Sum_probs=146.8
Q ss_pred CCCEEEEEccchhhhhhhhhhhhhHHHHHHHHHHHHhccCEEEecCCchHHH--hhCCCCCCEEEeCCCCCCchhhhhcc
Q 003758 7 SIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYS 84 (797)
Q Consensus 7 ~IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~~~~~~AD~VV~ps~~l~~i--~~gld~~ki~VIPnsGVDvw~ae~F~ 84 (797)
++|+|.++||.... ++. .. ..+.......++++|.|++++...... ..|++..++.++++ ..+. ...
T Consensus 92 ~~k~i~~ihD~~~~-~~~--~~---~~~~~~~~~~~~~aD~iI~~S~~~~~~l~~~g~~~~~i~~~~~-~~~~---~~~- 160 (333)
T PRK09814 92 QVKIIILIHDIEPL-RFD--SN---YYLMKEEIDMLNLADVLIVHSKKMKDRLVEEGLTTDKIIVQGI-FDYL---NDI- 160 (333)
T ss_pred CCEEEEEECCcHHH-hcc--cc---chhhHHHHHHHHhCCEEEECCHHHHHHHHHcCCCcCceEeccc-cccc---ccc-
Confidence 58999999994322 111 11 111233456889999999998766554 35777778877764 1111 000
Q ss_pred cchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHH
Q 003758 85 KSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQE 164 (797)
Q Consensus 85 ~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Lee 164 (797)
..+ ..+...+.|+|+|++.... .|. ...++++ ++++|.|+.. .
T Consensus 161 ------~~~---~~~~~~~~i~yaG~l~k~~--------------~l~-------~~~~~~~-l~i~G~g~~~--~---- 203 (333)
T PRK09814 161 ------ELV---KTPSFQKKINFAGNLEKSP--------------FLK-------NWSQGIK-LTVFGPNPED--L---- 203 (333)
T ss_pred ------ccc---ccccCCceEEEecChhhch--------------HHH-------hcCCCCe-EEEECCCccc--c----
Confidence 000 0123456899999876221 010 0135688 5899999864 2
Q ss_pred HHHHcCCCCCeEEEec--ChhhHHHHHHHcCEEEEccCC-------C--CCCccHHHHHHHHhCCcEEEcCCCChhHhhh
Q 003758 165 VASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQ-------V--EQGFPSLIVRAMTFGIPVITPDFPIIKEYVA 233 (797)
Q Consensus 165 la~elgL~d~~V~flG--~~edl~~~L~aADV~V~PS~~-------E--e~GFPlvLLEAMA~G~PVIasd~gGi~EiI~ 233 (797)
...+ +|+|+| +.+++..+|+. |+.+.+... + ...+|.++.++||||+|||+++.+++.++|.
T Consensus 204 -----~~~~-~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~~~V~ 276 (333)
T PRK09814 204 -----ENSA-NISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIADFIV 276 (333)
T ss_pred -----ccCC-CeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHHHHHH
Confidence 2334 799999 67889999988 655543211 1 1268999999999999999999999999999
Q ss_pred cCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH
Q 003758 234 EGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC 285 (797)
Q Consensus 234 Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~ 285 (797)
++.+|++++ +.++++++|..+. ++. +++|++++++.++..-.-..
T Consensus 277 ~~~~G~~v~--~~~el~~~l~~~~--~~~---~~~m~~n~~~~~~~~~~g~~ 321 (333)
T PRK09814 277 ENGLGFVVD--SLEELPEIIDNIT--EEE---YQEMVENVKKISKLLRNGYF 321 (333)
T ss_pred hCCceEEeC--CHHHHHHHHHhcC--HHH---HHHHHHHHHHHHHHHhcchh
Confidence 999999996 7889999998863 233 78899999998877644333
No 85
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.47 E-value=2.5e-12 Score=147.47 Aligned_cols=203 Identities=9% Similarity=0.020 Sum_probs=152.2
Q ss_pred EEEeCCCCCCchhhhhcccch-------hHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhc
Q 003758 67 FFVIPGSPADVWAVEAYSKSH-------EKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRN 139 (797)
Q Consensus 67 i~VIPnsGVDvw~ae~F~~s~-------~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk 139 (797)
+.++|. |||+ +.|.... ....+|++++ ++++|+.|+|+... ||+...++|+..++..+++.+
T Consensus 250 v~~~Pi-GID~---~~f~~~~~~~~~~~~~~~lr~~~~---~~kiIl~VDRLDy~----KGI~~kl~Afe~~L~~~Pe~~ 318 (487)
T TIGR02398 250 LGAHPV-GTDP---ERIRSALAAASIREMMERIRSELA---GVKLILSAERVDYT----KGILEKLNAYERLLERRPELL 318 (487)
T ss_pred EEEEEC-EecH---HHHHHHhcCchHHHHHHHHHHHcC---CceEEEEecccccc----cCHHHHHHHHHHHHHhCcccc
Confidence 678886 9998 6664321 1345777777 67899999998877 555999999999988776544
Q ss_pred cCCCCcEEEEEEeCCCC----C---CHHHHHHHHHHc-------CCCCCeEEEec--ChhhHHHHHHHcCEEEEccCCCC
Q 003758 140 SVEGSFKFVFLCGNSTD----G---YNDALQEVASRL-------GLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVE 203 (797)
Q Consensus 140 ~~~pdvkfLIIvG~g~~----~---Y~e~Leela~el-------gL~d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee 203 (797)
.++.| +++|.... . +...+++++.+. +..+ .+.+.+ +.+++..+|+.|||++.+|..|
T Consensus 319 ---gkv~L-vqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~p-v~~~~~~v~~~el~alYr~ADV~lvT~lrD- 392 (487)
T TIGR02398 319 ---GKVTL-VTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTP-LQFFTRSLPYEEVSAWFAMADVMWITPLRD- 392 (487)
T ss_pred ---CceEE-EEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCcc-EEEEcCCCCHHHHHHHHHhCCEEEECcccc-
Confidence 56785 55555431 1 245556655554 4444 456666 5789999999999999999999
Q ss_pred CCccHHHHHHHHhCC----cEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Q 003758 204 QGFPSLIVRAMTFGI----PVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKN 279 (797)
Q Consensus 204 ~GFPlvLLEAMA~G~----PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~ 279 (797)
|++++..|+|+|+. |+|.|.++|..+.+. .+++++|.|+++++++|..++..+.. +++...+..++++..
T Consensus 393 -GmNLVa~Eyva~~~~~~GvLILSefaGaa~~l~---~AllVNP~d~~~~A~ai~~AL~m~~~--Er~~R~~~l~~~v~~ 466 (487)
T TIGR02398 393 -GLNLVAKEYVAAQGLLDGVLVLSEFAGAAVELK---GALLTNPYDPVRMDETIYVALAMPKA--EQQARMREMFDAVNY 466 (487)
T ss_pred -ccCcchhhHHhhhcCCCCCEEEeccccchhhcC---CCEEECCCCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHhh
Confidence 99999999999998 999999999998773 37999999999999999999998873 355555666666666
Q ss_pred hcHHHHHHHHHHH
Q 003758 280 MLALDCVTRYARI 292 (797)
Q Consensus 280 ~~s~e~i~~Y~kL 292 (797)
+....-++.+..-
T Consensus 467 ~d~~~W~~~fl~~ 479 (487)
T TIGR02398 467 YDVQRWADEFLAA 479 (487)
T ss_pred CCHHHHHHHHHHH
Confidence 6544445544433
No 86
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.46 E-value=1.5e-12 Score=142.81 Aligned_cols=197 Identities=13% Similarity=0.074 Sum_probs=130.8
Q ss_pred cCEEEecCCchHH--HhhCCCCCCEEEeCCCCC-Cchhhhhcccc-hhHHHHHHHcCCCCCCEEEEEEcccccccccccc
Q 003758 45 VNVIVFPDYTLPM--LYSVLDAGNFFVIPGSPA-DVWAVEAYSKS-HEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWD 120 (797)
Q Consensus 45 AD~VV~ps~~l~~--i~~gld~~ki~VIPnsGV-Dvw~ae~F~~s-~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn 120 (797)
+|.+++++..... +..|++++++.+++| |+ |. ..+... .....++++++. ++.++++.|...... -|+
T Consensus 142 ad~~~~~s~~~~~~l~~~G~~~~~I~vign-~~~d~---~~~~~~~~~~~~~~~~~~~--~~~~vl~~~hr~~~~--~k~ 213 (365)
T TIGR00236 142 ADLHFAPTEQAKDNLLRENVKADSIFVTGN-TVIDA---LLTNVEIAYSSPVLSEFGE--DKRYILLTLHRRENV--GEP 213 (365)
T ss_pred HHhccCCCHHHHHHHHHcCCCcccEEEeCC-hHHHH---HHHHHhhccchhHHHhcCC--CCCEEEEecCchhhh--hhH
Confidence 6777877654433 345899999999998 54 53 111111 113345666663 233455544322111 267
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEec--ChhhHHHHHHHcCEEEEc
Q 003758 121 YAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYG 198 (797)
Q Consensus 121 ~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG--~~edl~~~L~aADV~V~P 198 (797)
...+++|+..+.. ..+++++ +++|.++. .....+.+.++..+ +|+++| ...++..+++.||++|.+
T Consensus 214 ~~~ll~a~~~l~~-------~~~~~~~-vi~~~~~~---~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~l~~ad~vv~~ 281 (365)
T TIGR00236 214 LENIFKAIREIVE-------EFEDVQI-VYPVHLNP---VVREPLHKHLGDSK-RVHLIEPLEYLDFLNLAANSHLILTD 281 (365)
T ss_pred HHHHHHHHHHHHH-------HCCCCEE-EEECCCCh---HHHHHHHHHhCCCC-CEEEECCCChHHHHHHHHhCCEEEEC
Confidence 7999999887742 2467784 55543322 22222444456655 799999 455788999999999987
Q ss_pred cCCCCCCccHHHHHHHHhCCcEEEc-CCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q 003758 199 SSQVEQGFPSLIVRAMTFGIPVITP-DFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAG 273 (797)
Q Consensus 199 S~~Ee~GFPlvLLEAMA~G~PVIas-d~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~a 273 (797)
| |..++|||+||+|||++ +.++.++++.++. +++++ .|++++++++..++++++. +.+++.+.
T Consensus 282 S-------g~~~~EA~a~g~PvI~~~~~~~~~e~~~~g~-~~lv~-~d~~~i~~ai~~ll~~~~~---~~~~~~~~ 345 (365)
T TIGR00236 282 S-------GGVQEEAPSLGKPVLVLRDTTERPETVEAGT-NKLVG-TDKENITKAAKRLLTDPDE---YKKMSNAS 345 (365)
T ss_pred C-------hhHHHHHHHcCCCEEECCCCCCChHHHhcCc-eEEeC-CCHHHHHHHHHHHHhChHH---HHHhhhcC
Confidence 6 34579999999999995 6788889888764 55564 7999999999999999876 66666554
No 87
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.45 E-value=1.7e-13 Score=128.44 Aligned_cols=132 Identities=24% Similarity=0.336 Sum_probs=91.2
Q ss_pred EEEEEEccccccccccccHHHHHH-HHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecC
Q 003758 103 IVVVVVGSSFFYNELSWDYAVAMH-DVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGF 181 (797)
Q Consensus 103 ~vIL~VGrl~~~KGl~Kn~~lLLk-Al~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~ 181 (797)
++|+++|+.... |+.+.+++ ++..+.+ +.++++ +.|+|.+++ .++++ ..+ +|+++|.
T Consensus 3 ~~i~~~g~~~~~----k~~~~li~~~~~~l~~-------~~p~~~-l~i~G~~~~----~l~~~-----~~~-~v~~~g~ 60 (135)
T PF13692_consen 3 LYIGYLGRIRPD----KGLEELIEAALERLKE-------KHPDIE-LIIIGNGPD----ELKRL-----RRP-NVRFHGF 60 (135)
T ss_dssp EEEE--S-SSGG----GTHHHHHH-HHHHHHH-------HSTTEE-EEEECESS-----HHCCH-----HHC-TEEEE-S
T ss_pred cccccccccccc----ccccchhhhHHHHHHH-------HCcCEE-EEEEeCCHH----HHHHh-----cCC-CEEEcCC
Confidence 577888876655 56699999 8877753 347888 488888664 23333 123 6999997
Q ss_pred hhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhC
Q 003758 182 NGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN 259 (797)
Q Consensus 182 ~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLed 259 (797)
.+++.++++.||++|.|+...+ ++|.+++|||++|+|||+++. +..+++.....|+++ .+|+++++++|.++++|
T Consensus 61 ~~e~~~~l~~~dv~l~p~~~~~-~~~~k~~e~~~~G~pvi~~~~-~~~~~~~~~~~~~~~-~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 61 VEELPEILAAADVGLIPSRFNE-GFPNKLLEAMAAGKPVIASDN-GAEGIVEEDGCGVLV-ANDPEELAEAIERLLND 135 (135)
T ss_dssp -HHHHHHHHC-SEEEE-BSS-S-CC-HHHHHHHCTT--EEEEHH-HCHCHS---SEEEE--TT-HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCEEEEEeeCCC-cCcHHHHHHHHhCCCEEECCc-chhhheeecCCeEEE-CCCHHHHHHHHHHHhcC
Confidence 7899999999999999996543 899999999999999999999 566677656667777 79999999999999875
No 88
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.40 E-value=1.8e-12 Score=127.93 Aligned_cols=118 Identities=24% Similarity=0.283 Sum_probs=98.2
Q ss_pred EEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecC---hh
Q 003758 107 VVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGF---NG 183 (797)
Q Consensus 107 ~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~---~e 183 (797)
++|++... |+.+.+++++..+.. ..++++ ++++|.+... ......+...+..+ +|.++|. .+
T Consensus 109 ~~g~~~~~----k~~~~~~~a~~~l~~-------~~~~~~-~~i~G~~~~~--~~~~~~~~~~~~~~-~v~~~~~~~~~~ 173 (229)
T cd01635 109 FVGRLAPE----KGLDDLIEAFALLKE-------RGPDLK-LVIAGDGPER--EYLEELLAALLLLD-RVIFLGGLDPEE 173 (229)
T ss_pred EEEeeccc----CCHHHHHHHHHHHHH-------hCCCeE-EEEEeCCCCh--HHHHHHHHhcCCcc-cEEEeCCCCcHH
Confidence 88887766 666999999988842 346888 4888888765 55555566777776 8999995 45
Q ss_pred hHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEE
Q 003758 184 DVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFF 241 (797)
Q Consensus 184 dl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lf 241 (797)
++..+++.||++++||..| ++|.+++|||++|+|||+++.++.+|++.++.+|+++
T Consensus 174 ~~~~~~~~~di~l~~~~~e--~~~~~~~Eam~~g~pvi~s~~~~~~e~i~~~~~g~~~ 229 (229)
T cd01635 174 LLALLLAAADVFVLPSLRE--GFGLVVLEAMACGLPVIATDVGGPPEIVEDGLTGLLV 229 (229)
T ss_pred HHHHHhhcCCEEEeccccc--CcChHHHHHHhCCCCEEEcCCCCcceEEECCCceEEC
Confidence 6777777799999999998 9999999999999999999999999999999999874
No 89
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.38 E-value=1e-11 Score=134.95 Aligned_cols=194 Identities=15% Similarity=0.049 Sum_probs=134.7
Q ss_pred HhccCEEEecCCchHHH--hhCCCCCCEEEeCCCCCCchhhhhcccchh-HHHHHHHcCCCCCCEEEEEEcccccccccc
Q 003758 42 FSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSHE-KYQLRKENGFLKDEIVVVVVGSSFFYNELS 118 (797)
Q Consensus 42 ~~~AD~VV~ps~~l~~i--~~gld~~ki~VIPnsGVDvw~ae~F~~s~~-k~slR~klGL~~d~~vIL~VGrl~~~KGl~ 118 (797)
.+.+|.+++++...... ..|++++++.++++.++|. ..+..... ....++.++++.++++++++|+..... ..
T Consensus 139 ~~~ad~~~~~s~~~~~~l~~~G~~~~kI~vign~v~d~---~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~-~~ 214 (363)
T cd03786 139 DKLSDLHFAPTEEARRNLLQEGEPPERIFVVGNTMIDA---LLRLLELAKKELILELLGLLPKKYILVTLHRVENVD-DG 214 (363)
T ss_pred HHHhhhccCCCHHHHHHHHHcCCCcccEEEECchHHHH---HHHHHHhhccchhhhhcccCCCCEEEEEeCCccccC-Ch
Confidence 34567888776554433 5689999999999722453 22111111 122345678877777788888765421 12
Q ss_pred ccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCC-CCCeEEEec--ChhhHHHHHHHcCEE
Q 003758 119 WDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGL-LEHSVRHYG--FNGDVNGVLLMADIV 195 (797)
Q Consensus 119 Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL-~d~~V~flG--~~edl~~~L~aADV~ 195 (797)
|+...+++++..+.. .++. +++.|+++.. +.+++.+.++++ .+ +|++.| ...++..+|+.||++
T Consensus 215 k~~~~l~~al~~l~~---------~~~~-vi~~~~~~~~--~~l~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~ad~~ 281 (363)
T cd03786 215 EQLEEILEALAELAE---------EDVP-VVFPNHPRTR--PRIREAGLEFLGHHP-NVLLISPLGYLYFLLLLKNADLV 281 (363)
T ss_pred HHHHHHHHHHHHHHh---------cCCE-EEEECCCChH--HHHHHHHHhhccCCC-CEEEECCcCHHHHHHHHHcCcEE
Confidence 677999999987631 1466 3555666554 788888887776 44 799997 567899999999999
Q ss_pred EEccCCCCCCccHHHHHHHHhCCcEEEcCCC-ChhHhhhcCCeEEEEcC-CCHHHHHHHHHHHHhCccc
Q 003758 196 LYGSSQVEQGFPSLIVRAMTFGIPVITPDFP-IIKEYVAEGAQVIFFQK-DNPEGLSRAFSLFISNGKL 262 (797)
Q Consensus 196 V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g-Gi~EiI~Dg~nG~Lfd~-~D~eeLAeaI~~LLedpel 262 (797)
|.+| | | ++.|||++|+|||+++.. ..++.+.+| +.+.. .|+++++++|..+++++..
T Consensus 282 v~~S-----g-g-i~~Ea~~~g~PvI~~~~~~~~~~~~~~g---~~~~~~~~~~~i~~~i~~ll~~~~~ 340 (363)
T cd03786 282 LTDS-----G-G-IQEEASFLGVPVLNLRDRTERPETVESG---TNVLVGTDPEAILAAIEKLLSDEFA 340 (363)
T ss_pred EEcC-----c-c-HHhhhhhcCCCEEeeCCCCccchhhhee---eEEecCCCHHHHHHHHHHHhcCchh
Confidence 9988 3 3 478999999999999754 466776554 33333 3799999999999998875
No 90
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.38 E-value=6.7e-12 Score=145.37 Aligned_cols=165 Identities=11% Similarity=0.140 Sum_probs=141.2
Q ss_pred EEEEEc--cccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCC-CCHHHHHHHHHHcCCC--------
Q 003758 104 VVVVVG--SSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTD-GYNDALQEVASRLGLL-------- 172 (797)
Q Consensus 104 vIL~VG--rl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~-~Y~e~Leela~elgL~-------- 172 (797)
.+++++ ++ +. |..+.+++++..++. +.|+++ |.+.|.+.. .+...++++++++++.
T Consensus 321 ~~I~v~idrL-~e----k~~~~~I~av~~~~~-------~~p~~~-L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~ 387 (519)
T TIGR03713 321 TEIGFWIDGL-SD----EELQQILQQLLQYIL-------KNPDYE-LKILTYNNDNDITQLLEDILEQINEEYNQDKNFF 387 (519)
T ss_pred eEEEEEcCCC-Ch----HHHHHHHHHHHHHHh-------hCCCeE-EEEEEecCchhHHHHHHHHHHHHHhhhchhhhcc
Confidence 567777 87 66 556999999988864 457888 688898763 3556777777777666
Q ss_pred ---------------------CCeEEEecChh--hHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChh
Q 003758 173 ---------------------EHSVRHYGFNG--DVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIK 229 (797)
Q Consensus 173 ---------------------d~~V~flG~~e--dl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~ 229 (797)
. .|.|.|... ++.+.|..+.++|.+|..| ||+ +++||++.|+|+| .-|..
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~-~v~f~gy~~e~dl~~~~~~arl~id~s~~e--g~~-~~ieAiS~GiPqI---nyg~~ 460 (519)
T TIGR03713 388 SLSEQDENQPILQTDEEQKEKE-RIAFTTLTNEEDLISALDKLRLIIDLSKEP--DLY-TQISGISAGIPQI---NKVET 460 (519)
T ss_pred ccchhhhhhhcccchhhccccc-EEEEEecCCHHHHHHHHhhheEEEECCCCC--ChH-HHHHHHHcCCCee---ecCCc
Confidence 5 899999665 9999999999999999999 999 9999999999999 55668
Q ss_pred HhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 003758 230 EYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARIL 293 (797)
Q Consensus 230 EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLL 293 (797)
++|.+++||+++ +|..+|+++|..++.+++. .+++...+.+.++++....++++|.+++
T Consensus 461 ~~V~d~~NG~li--~d~~~l~~al~~~L~~~~~---wn~~~~~sy~~~~~yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 461 DYVEHNKNGYII--DDISELLKALDYYLDNLKN---WNYSLAYSIKLIDDYSSENIIERLNELI 519 (519)
T ss_pred eeeEcCCCcEEe--CCHHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHhhHHHHHHHHHhhC
Confidence 999999999999 8999999999999999987 8999999999999999889999988763
No 91
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.23 E-value=2.1e-09 Score=116.24 Aligned_cols=265 Identities=11% Similarity=0.083 Sum_probs=175.0
Q ss_pred CCCCCEEEEEccchhhhhh----hhhhhh---hH------HHHHHHHHHHHhccCEEEecCCc----hHHHhhCCCCCCE
Q 003758 5 FHSIPLVWIIQEDSLANRL----PVYVER---GF------QNLLSYWKSVFSRVNVIVFPDYT----LPMLYSVLDAGNF 67 (797)
Q Consensus 5 F~~IPVIW~IHE~sL~~rL----~~y~~~---g~------eklls~~~~~~~~AD~VV~ps~~----l~~i~~gld~~ki 67 (797)
|.++||+--+|-..+...+ .+.... .+ +.+..-+..+=..||.|.+.++- +..+... ..+
T Consensus 170 l~~~~V~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nHI~qiW~~---~~~ 246 (465)
T KOG1387|consen 170 LRRIPVVAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQSAGSKADIVMTNSSWTNNHIKQIWQS---NTC 246 (465)
T ss_pred HccCceEEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHhccccceEEEecchhhHHHHHHHhhc---cce
Confidence 4589999999954332221 111111 01 11111233345677877776533 2333222 333
Q ss_pred EEeCCCCCCchhhhhcccchhHHHHHHHcCC-CCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcE
Q 003758 68 FVIPGSPADVWAVEAYSKSHEKYQLRKENGF-LKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFK 146 (797)
Q Consensus 68 ~VIPnsGVDvw~ae~F~~s~~k~slR~klGL-~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvk 146 (797)
.++.. |.+. ..+.+..+- ..+.+.++++|...+. |||. +++.+.......+.. ...++++
T Consensus 247 ~iVyP-PC~~------------e~lks~~~te~~r~~~ll~l~Q~RPE----KnH~-~Lql~Al~~~~~pl~-a~~~~iK 307 (465)
T KOG1387|consen 247 SIVYP-PCST------------EDLKSKFGTEGERENQLLSLAQFRPE----KNHK-ILQLFALYLKNEPLE-ASVSPIK 307 (465)
T ss_pred eEEcC-CCCH------------HHHHHHhcccCCcceEEEEEeecCcc----cccH-HHHHHHHHHhcCchh-hccCCce
Confidence 33322 3443 244444444 4456789999886666 7777 555444332222211 2357889
Q ss_pred EEEEEeCCCCC----CHHHHHHHHHHcCCCCCeEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcE
Q 003758 147 FVFLCGNSTDG----YNDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPV 220 (797)
Q Consensus 147 fLIIvG~g~~~----Y~e~Leela~elgL~d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PV 220 (797)
|+++|...++ +...+++++.++.+++ +|.|.- +.+++..+|..|.+.|.+-..| .||+.++|+||+|+-+
T Consensus 308 -L~ivGScRneeD~ervk~Lkd~a~~L~i~~-~v~F~~N~Py~~lv~lL~~a~iGvh~MwNE--HFGIsVVEyMAAGlIp 383 (465)
T KOG1387|consen 308 -LIIVGSCRNEEDEERVKSLKDLAEELKIPK-HVQFEKNVPYEKLVELLGKATIGVHTMWNE--HFGISVVEYMAAGLIP 383 (465)
T ss_pred -EEEEeccCChhhHHHHHHHHHHHHhcCCcc-ceEEEecCCHHHHHHHhccceeehhhhhhh--hcchhHHHHHhcCceE
Confidence 6899986544 3566788889999998 899887 6789999999999999988877 9999999999999998
Q ss_pred EEcCCCC-hhHhhhc---CCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 003758 221 ITPDFPI-IKEYVAE---GAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENV 296 (797)
Q Consensus 221 Iasd~gG-i~EiI~D---g~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLLe~l 296 (797)
|+.+.+| .-++|.+ ..+||+. .+.++.++++.+++.... +.+..|..+||+.+.++......+.+...+.++
T Consensus 384 i~h~SgGP~lDIV~~~~G~~tGFla--~t~~EYaE~iLkIv~~~~--~~r~~~r~~AR~s~~RFsE~~F~kd~~~~i~kl 459 (465)
T KOG1387|consen 384 IVHNSGGPLLDIVTPWDGETTGFLA--PTDEEYAEAILKIVKLNY--DERNMMRRNARKSLARFGELKFDKDWENPICKL 459 (465)
T ss_pred EEeCCCCCceeeeeccCCccceeec--CChHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHhhHHHHHHhHhHHHHHh
Confidence 8888875 4455543 3479888 577889999999997554 237788888888887776656677888888888
Q ss_pred hcC
Q 003758 297 LNF 299 (797)
Q Consensus 297 L~~ 299 (797)
+.-
T Consensus 460 l~e 462 (465)
T KOG1387|consen 460 LEE 462 (465)
T ss_pred hcc
Confidence 764
No 92
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.21 E-value=4.2e-10 Score=137.06 Aligned_cols=237 Identities=11% Similarity=0.133 Sum_probs=160.4
Q ss_pred HHHHHhccCEEEecCCchHHH-------hhCCC--------CC---CEEEeCCCCCCchhhhhcccch-------hHHHH
Q 003758 38 WKSVFSRVNVIVFPDYTLPML-------YSVLD--------AG---NFFVIPGSPADVWAVEAYSKSH-------EKYQL 92 (797)
Q Consensus 38 ~~~~~~~AD~VV~ps~~l~~i-------~~gld--------~~---ki~VIPnsGVDvw~ae~F~~s~-------~k~sl 92 (797)
....+-.||.|-|.+.....- .-|+. .+ ++.+.|- |||. +.|.... ....+
T Consensus 281 lL~glL~aDlIGFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~Pi-GID~---~~f~~~~~~~~v~~~~~~l 356 (934)
T PLN03064 281 LLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPI-GIDS---DRFIRALETPQVQQHIKEL 356 (934)
T ss_pred HHHHHhcCCeEEeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeC-EEcH---HHHHHHhcChhHHHHHHHH
Confidence 344677888888875432211 11211 11 2445674 9998 6664321 12356
Q ss_pred HHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEE----eCCCCCC---HHHHHHH
Q 003758 93 RKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLC----GNSTDGY---NDALQEV 165 (797)
Q Consensus 93 R~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIv----G~g~~~Y---~e~Leel 165 (797)
+++++ ++.+|+.|+++... ||+...++|++.++..+++.+ .++.++-|+ ++++. | ...+.++
T Consensus 357 r~~~~---g~kiIlgVDRLD~~----KGI~~kL~AfE~fL~~~Pe~r---~kVVLvQIa~psr~~v~e-Y~~l~~~V~~~ 425 (934)
T PLN03064 357 KERFA---GRKVMLGVDRLDMI----KGIPQKILAFEKFLEENPEWR---DKVVLLQIAVPTRTDVPE-YQKLTSQVHEI 425 (934)
T ss_pred HHHhC---CceEEEEeeccccc----cCHHHHHHHHHHHHHhCcccc---CCEEEEEEcCCCCCCcHH-HHHHHHHHHHH
Confidence 66655 56799999998876 555999999999987776544 334432222 22222 2 1223333
Q ss_pred HHHcC----CC-CCeEEEec---ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCC----cEEEcCCCChhHhhh
Q 003758 166 ASRLG----LL-EHSVRHYG---FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGI----PVITPDFPIIKEYVA 233 (797)
Q Consensus 166 a~elg----L~-d~~V~flG---~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~----PVIasd~gGi~EiI~ 233 (797)
+.+.+ -. ...|+++. +.+++..+|+.|||+|+||..| |++++..|||+|+. ++|.|.+.|..+.+.
T Consensus 426 V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrD--GmNLva~Eyva~~~~~~GvLILSEfaGaa~~L~ 503 (934)
T PLN03064 426 VGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRD--GMNLVSYEFVACQDSKKGVLILSEFAGAAQSLG 503 (934)
T ss_pred HHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCcccc--ccCchHHHHHHhhcCCCCCeEEeCCCchHHHhC
Confidence 33322 11 01255554 5688999999999999999999 99999999999954 455599999998883
Q ss_pred cCCeEEEEcCCCHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 003758 234 EGAQVIFFQKDNPEGLSRAFSLFIS-NGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENV 296 (797)
Q Consensus 234 Dg~nG~Lfd~~D~eeLAeaI~~LLe-dpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLLe~l 296 (797)
. .+++++|.|+++++++|..++. +++. ++.+.+..++++..+.+..-++.+..-+..+
T Consensus 504 ~--~AllVNP~D~~~vA~AI~~AL~M~~~E---r~~r~~~~~~~V~~~d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 504 A--GAILVNPWNITEVAASIAQALNMPEEE---REKRHRHNFMHVTTHTAQEWAETFVSELNDT 562 (934)
T ss_pred C--ceEEECCCCHHHHHHHHHHHHhCCHHH---HHHHHHHHHhhcccCCHHHHHHHHHHHHHHH
Confidence 3 4899999999999999999998 4444 7788888999998887777777766655554
No 93
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.04 E-value=1.5e-08 Score=113.33 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=105.5
Q ss_pred HHHHHHHcCCCCCCEEEEEE-ccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHH
Q 003758 89 KYQLRKENGFLKDEIVVVVV-GSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVAS 167 (797)
Q Consensus 89 k~slR~klGL~~d~~vIL~V-Grl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~ 167 (797)
+...++++|++++.++|+++ |+.... +.|....+++++..+. +..+++++++.++.+... +.+++..+
T Consensus 178 ~~~~r~~lgl~~~~~~Ilvl~GSR~ae--i~k~~~~ll~a~~~l~-------~~~p~~~~vi~~~~~~~~--~~~~~~~~ 246 (385)
T TIGR00215 178 RKSAREKLGIDHNGETLALLPGSRGSE--VEKLFPLFLKAAQLLE-------QQEPDLRRVLPVVNFKRR--LQFEQIKA 246 (385)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCCHHH--HHHhHHHHHHHHHHHH-------HhCCCeEEEEEeCCchhH--HHHHHHHH
Confidence 45567889998888777765 443222 2355677777776663 335788865555555543 66777777
Q ss_pred HcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEc-CCCChh----------------H
Q 003758 168 RLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP-DFPIIK----------------E 230 (797)
Q Consensus 168 elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIas-d~gGi~----------------E 230 (797)
.++... .|.+++. +...+|++||++|.+| |.+.+|||++|+|+|.. ..+.+. .
T Consensus 247 ~~~~~~-~v~~~~~--~~~~~l~aADl~V~~S-------Gt~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~n 316 (385)
T TIGR00215 247 EYGPDL-QLHLIDG--DARKAMFAADAALLAS-------GTAALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPN 316 (385)
T ss_pred HhCCCC-cEEEECc--hHHHHHHhCCEEeecC-------CHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccH
Confidence 776654 6766653 5678999999999988 45667999999998765 333222 2
Q ss_pred hhhcCCe--EEEEcCCCHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHH
Q 003758 231 YVAEGAQ--VIFFQKDNPEGLSRAFSLFISNG----KLSKFARTVASAGRLH 276 (797)
Q Consensus 231 iI~Dg~n--G~Lfd~~D~eeLAeaI~~LLedp----el~~~r~~m~~~aRk~ 276 (797)
++.+..- -++-..-+++.+++.+..++.|+ +. ++++.+...+.
T Consensus 317 il~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~---~~~~~~~~~~~ 365 (385)
T TIGR00215 317 ILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKE---MHRERQFFEEL 365 (385)
T ss_pred HhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHH---HHHHHHHHHHH
Confidence 2222211 11113346999999999999998 65 44444443333
No 94
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.04 E-value=1e-09 Score=97.68 Aligned_cols=90 Identities=26% Similarity=0.374 Sum_probs=80.0
Q ss_pred EEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q 003758 194 IVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAG 273 (797)
Q Consensus 194 V~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~a 273 (797)
+.+.|+... +++..++|+||||+|||+++.+++.+++.++.++++++ |++++.+++..+++||+. +++++++|
T Consensus 1 i~Ln~~~~~--~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~--~~~el~~~i~~ll~~~~~---~~~ia~~a 73 (92)
T PF13524_consen 1 INLNPSRSD--GPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYN--DPEELAEKIEYLLENPEE---RRRIAKNA 73 (92)
T ss_pred CEeeCCCCC--CCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEEC--CHHHHHHHHHHHHCCHHH---HHHHHHHH
Confidence 456788777 99999999999999999999999999999999999986 999999999999999987 89999999
Q ss_pred HHHHHHhcHHHH-HHHHH
Q 003758 274 RLHAKNMLALDC-VTRYA 290 (797)
Q Consensus 274 Rk~ak~~~s~e~-i~~Y~ 290 (797)
++++.+.++++. ++.+.
T Consensus 74 ~~~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 74 RERVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 999997776655 55543
No 95
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.02 E-value=6.6e-09 Score=118.39 Aligned_cols=185 Identities=12% Similarity=0.164 Sum_probs=132.1
Q ss_pred hccCEEEecCCc-hHHHhhCCC-CCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEEEEEcccccccccccc
Q 003758 43 SRVNVIVFPDYT-LPMLYSVLD-AGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWD 120 (797)
Q Consensus 43 ~~AD~VV~ps~~-l~~i~~gld-~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn 120 (797)
.+.|.||+++.. ...+..-++ ..++.+||. |+=. . + . . . ......+++++.
T Consensus 238 ~~~~~iIv~T~~q~~di~~r~~~~~~~~~ip~-g~i~---~-~--~--~-----~---~r~~~~~l~~t~---------- 290 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKELLDNEYQEQISQL-GYLY---P-F--K--K-----D---NKYRKQALILTN---------- 290 (438)
T ss_pred cccCeEEeCCHHHHHHHHHHhCcccCceEEEE-EEEE---e-e--c--c-----c---cCCcccEEEECC----------
Confidence 778889998854 333433333 456677775 4321 0 0 0 0 0 112235666662
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCC-CCHHHHHHHHHHcCCCCCeEEEecChh-hHHHHHHHcCEEEEc
Q 003758 121 YAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTD-GYNDALQEVASRLGLLEHSVRHYGFNG-DVNGVLLMADIVLYG 198 (797)
Q Consensus 121 ~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~-~Y~e~Leela~elgL~d~~V~flG~~e-dl~~~L~aADV~V~P 198 (797)
...++++..|+++ .|+++| .| |.+++ . +.+.++ .++ ++ .+.+.|... ++.++|..||+++-.
T Consensus 291 -s~~I~~i~~Lv~~-------lPd~~f-~I-ga~te~s--~kL~~L-~~y--~n-vvly~~~~~~~l~~ly~~~dlyLdi 354 (438)
T TIGR02919 291 -SDQIEHLEEIVQA-------LPDYHF-HI-AALTEMS--SKLMSL-DKY--DN-VKLYPNITTQKIQELYQTCDIYLDI 354 (438)
T ss_pred -HHHHHHHHHHHHh-------CCCcEE-EE-EecCccc--HHHHHH-Hhc--CC-cEEECCcChHHHHHHHHhccEEEEc
Confidence 6788888888654 478885 66 76665 3 778777 655 55 677777554 899999999999999
Q ss_pred cCCCCCCccHHHHHHHHhCCcEEEcCCC-ChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Q 003758 199 SSQVEQGFPSLIVRAMTFGIPVITPDFP-IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHA 277 (797)
Q Consensus 199 S~~Ee~GFPlvLLEAMA~G~PVIasd~g-Gi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~a 277 (797)
|..| +|+.++.||++.|+|||+.+.. +..+++.+ |.+++.+++++|+++|..++.+++. .+..-...++.|
T Consensus 355 n~~e--~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l~~~~~~~~m~~~i~~lL~d~~~---~~~~~~~q~~~a 426 (438)
T TIGR02919 355 NHGN--EILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENIFEHNEVDQLISKLKDLLNDPNQ---FRELLEQQREHA 426 (438)
T ss_pred cccc--cHHHHHHHHHHcCCcEEEEecccCCcccccC---CceecCCCHHHHHHHHHHHhcCHHH---HHHHHHHHHHHh
Confidence 9999 9999999999999999999977 66677766 7899999999999999999999976 344333344444
Q ss_pred H
Q 003758 278 K 278 (797)
Q Consensus 278 k 278 (797)
.
T Consensus 427 ~ 427 (438)
T TIGR02919 427 N 427 (438)
T ss_pred c
Confidence 3
No 96
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.92 E-value=1.4e-07 Score=105.50 Aligned_cols=236 Identities=17% Similarity=0.166 Sum_probs=164.1
Q ss_pred hHHHHHHHHHHHHhccCEEEecCCchHHHhhCCCCCCEEEeCCCCCCchhhhhccc-chhHHHHHHHcCCCCCCEEEEEE
Q 003758 30 GFQNLLSYWKSVFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSK-SHEKYQLRKENGFLKDEIVVVVV 108 (797)
Q Consensus 30 g~eklls~~~~~~~~AD~VV~ps~~l~~i~~gld~~ki~VIPnsGVDvw~ae~F~~-s~~k~slR~klGL~~d~~vIL~V 108 (797)
+..++-...+..+++.|.|++.+......+..+...++.+.-|.-+|+ +.-.. ......+|..++.+ +.+++..
T Consensus 163 ~y~k~~~~~~~~~~~i~li~aQse~D~~Rf~~LGa~~v~v~GNlKfd~---~~~~~~~~~~~~~r~~l~~~--r~v~iaa 237 (419)
T COG1519 163 RYAKLKFLARLLFKNIDLILAQSEEDAQRFRSLGAKPVVVTGNLKFDI---EPPPQLAAELAALRRQLGGH--RPVWVAA 237 (419)
T ss_pred HHHHHHHHHHHHHHhcceeeecCHHHHHHHHhcCCcceEEecceeecC---CCChhhHHHHHHHHHhcCCC--CceEEEe
Confidence 344555556778999999999998887777666666677777755554 11111 12345677777654 5577777
Q ss_pred ccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCC------------CCeE
Q 003758 109 GSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLL------------EHSV 176 (797)
Q Consensus 109 Grl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~------------d~~V 176 (797)
++.. .+-..+++++..|. +..+++. ++++...+++ .+.++++++..|++ +.+|
T Consensus 238 STH~------GEeei~l~~~~~l~-------~~~~~~l-lIlVPRHpER-f~~v~~l~~~~gl~~~~rS~~~~~~~~tdV 302 (419)
T COG1519 238 STHE------GEEEIILDAHQALK-------KQFPNLL-LILVPRHPER-FKAVENLLKRKGLSVTRRSQGDPPFSDTDV 302 (419)
T ss_pred cCCC------chHHHHHHHHHHHH-------hhCCCce-EEEecCChhh-HHHHHHHHHHcCCeEEeecCCCCCCCCCcE
Confidence 6521 23467888888885 4567887 7999999887 77888888888764 1135
Q ss_pred EEecChhhHHHHHHHcCEEEEc-cCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhhcCCeEEEEcCCCHHHHHH
Q 003758 177 RHYGFNGDVNGVLLMADIVLYG-SSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAEGAQVIFFQKDNPEGLSR 251 (797)
Q Consensus 177 ~flG~~edl~~~L~aADV~V~P-S~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~Dg~nG~Lfd~~D~eeLAe 251 (797)
.+.+.-.++..+|+.+|+.++. |..+ -.|-.++|+.++|+|||.-... .+.+-+...+.|+.++ |.+.++.
T Consensus 303 ~l~DtmGEL~l~y~~adiAFVGGSlv~--~GGHN~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~--~~~~l~~ 378 (419)
T COG1519 303 LLGDTMGELGLLYGIADIAFVGGSLVP--IGGHNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVE--DADLLAK 378 (419)
T ss_pred EEEecHhHHHHHHhhccEEEECCcccC--CCCCChhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEEC--CHHHHHH
Confidence 5555667899999999998774 5555 5577889999999999975443 4444455555577774 5888888
Q ss_pred HHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 003758 252 AFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILE 294 (797)
Q Consensus 252 aI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLLe 294 (797)
++..++.|++. +.++++++...+.++-. ..+.+.+.++
T Consensus 379 ~v~~l~~~~~~---r~~~~~~~~~~v~~~~g--al~r~l~~l~ 416 (419)
T COG1519 379 AVELLLADEDK---REAYGRAGLEFLAQNRG--ALARTLEALK 416 (419)
T ss_pred HHHHhcCCHHH---HHHHHHHHHHHHHHhhH--HHHHHHHHhh
Confidence 88888888766 89999999998887733 3444444443
No 97
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=4.2e-08 Score=106.48 Aligned_cols=163 Identities=17% Similarity=0.227 Sum_probs=127.2
Q ss_pred CEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEec-
Q 003758 102 EIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG- 180 (797)
Q Consensus 102 ~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG- 180 (797)
.+.+++..+...++ .++-.+++|+...-.+......+.|.+- .+|.|+||.. +.+.+.++++.+.+ |.+.-
T Consensus 254 ~pallvsSTswTpD---Edf~ILL~AL~~y~~~~~~~~~~lP~ll-ciITGKGPlk--E~Y~~~I~~~~~~~--v~~~tp 325 (444)
T KOG2941|consen 254 RPALLVSSTSWTPD---EDFGILLEALVIYEEQLYDKTHNLPSLL-CIITGKGPLK--EKYSQEIHEKNLQH--VQVCTP 325 (444)
T ss_pred CCeEEEecCCCCCc---ccHHHHHHHHHhhhhhhhhccCCCCcEE-EEEcCCCchh--HHHHHHHHHhcccc--eeeeec
Confidence 34444444555554 5678999998755444444445677887 4899999998 99999999999985 66654
Q ss_pred --ChhhHHHHHHHcCEEEE--ccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHH
Q 003758 181 --FNGDVNGVLLMADIVLY--GSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLF 256 (797)
Q Consensus 181 --~~edl~~~L~aADV~V~--PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~L 256 (797)
..+|.+.+++.||+.|+ +|.. +--.|++++.-..||+||+|-+...+.|+|.+++||++| +|.++|++.+.-+
T Consensus 326 WL~aEDYP~ll~saDlGVcLHtSSS-GLDLPMKVVDMFGcglPvcA~~fkcl~ELVkh~eNGlvF--~Ds~eLa~ql~~l 402 (444)
T KOG2941|consen 326 WLEAEDYPKLLASADLGVCLHTSSS-GLDLPMKVVDMFGCGLPVCAVNFKCLDELVKHGENGLVF--EDSEELAEQLQML 402 (444)
T ss_pred ccccccchhHhhccccceEeeecCc-ccCcchhHHHhhcCCCceeeecchhHHHHHhcCCCceEe--ccHHHHHHHHHHH
Confidence 78899999999999876 3333 124899999999999999999999999999999999999 6999999999999
Q ss_pred Hh----CcccHHHHHHHHHHHHHHHH
Q 003758 257 IS----NGKLSKFARTVASAGRLHAK 278 (797)
Q Consensus 257 Le----dpel~~~r~~m~~~aRk~ak 278 (797)
.+ +.+. ..++..++++..+
T Consensus 403 f~~fp~~a~~---l~~lkkn~~e~~e 425 (444)
T KOG2941|consen 403 FKNFPDNADE---LNQLKKNLREEQE 425 (444)
T ss_pred HhcCCCCHHH---HHHHHHhhHHHHh
Confidence 98 4444 6667777766633
No 98
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=98.86 E-value=3.9e-07 Score=101.54 Aligned_cols=231 Identities=19% Similarity=0.242 Sum_probs=142.8
Q ss_pred CCCCCEEEEEccchhhhhhhhhhhhhHHHHHHHHHHHHhccCEEEecCCchHHHhhCCCCCCEEEeCCCCCCchhhhhcc
Q 003758 5 FHSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYS 84 (797)
Q Consensus 5 F~~IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~~~~~~AD~VV~ps~~l~~i~~gld~~ki~VIPnsGVDvw~ae~F~ 84 (797)
+.+||++.+.++...+.- .+++ ...++.|...-.. ...+++..++.+..+ ||.. .|.
T Consensus 112 ~~~iPv~ihEqn~~~G~a---------nk~~------~~~a~~V~~~f~~---~~~~~~~~~~~~tG~-Pvr~----~~~ 168 (357)
T COG0707 112 LLGIPVIIHEQNAVPGLA---------NKIL------SKFAKKVASAFPK---LEAGVKPENVVVTGI-PVRP----EFE 168 (357)
T ss_pred hCCCCEEEEecCCCcchh---------HHHh------HHhhceeeecccc---ccccCCCCceEEecC-cccH----Hhh
Confidence 567999966665332221 1222 2334455543322 234566667777655 6664 332
Q ss_pred cchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHH
Q 003758 85 KSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQE 164 (797)
Q Consensus 85 ~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Lee 164 (797)
. ......+.... . +.++|+++|... |. ..+-+++..+..... .+++++.++|... . +.+..
T Consensus 169 ~-~~~~~~~~~~~-~-~~~~ilV~GGS~---Ga----~~ln~~v~~~~~~l~------~~~~v~~~~G~~~-~--~~~~~ 229 (357)
T COG0707 169 E-LPAAEVRKDGR-L-DKKTILVTGGSQ---GA----KALNDLVPEALAKLA------NRIQVIHQTGKND-L--EELKS 229 (357)
T ss_pred c-cchhhhhhhcc-C-CCcEEEEECCcc---hh----HHHHHHHHHHHHHhh------hCeEEEEEcCcch-H--HHHHH
Confidence 2 11222222222 2 566777776532 22 334444433332221 2577777777664 2 44444
Q ss_pred HHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC-C-------hhHhhhcCC
Q 003758 165 VASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP-I-------IKEYVAEGA 236 (797)
Q Consensus 165 la~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g-G-------i~EiI~Dg~ 236 (797)
.-.+++. +.+.++.+++..+|+.||++|.- +.++++.|+.++|+|+|--..+ + ..+.+.+..
T Consensus 230 ~~~~~~~----~~v~~f~~dm~~~~~~ADLvIsR------aGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~g 299 (357)
T COG0707 230 AYNELGV----VRVLPFIDDMAALLAAADLVISR------AGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAG 299 (357)
T ss_pred HHhhcCc----EEEeeHHhhHHHHHHhccEEEeC------CcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCC
Confidence 3443332 77888889999999999999984 4468999999999998876655 3 455666766
Q ss_pred eEEEEcCCC--HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 003758 237 QVIFFQKDN--PEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYA 290 (797)
Q Consensus 237 nG~Lfd~~D--~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~ 290 (797)
.|.+++..+ ++.+.+.|.+++++++. ...|+.++++........+.++...
T Consensus 300 aa~~i~~~~lt~~~l~~~i~~l~~~~~~---l~~m~~~a~~~~~p~aa~~i~~~~~ 352 (357)
T COG0707 300 AALVIRQSELTPEKLAELILRLLSNPEK---LKAMAENAKKLGKPDAAERIADLLL 352 (357)
T ss_pred CEEEeccccCCHHHHHHHHHHHhcCHHH---HHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 788887666 99999999999999876 7889998888777665555544333
No 99
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=98.73 E-value=3.9e-07 Score=107.65 Aligned_cols=184 Identities=10% Similarity=0.021 Sum_probs=134.0
Q ss_pred CCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCC------CHHHHHHHHHHcCC
Q 003758 98 FLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDG------YNDALQEVASRLGL 171 (797)
Q Consensus 98 L~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~------Y~e~Leela~elgL 171 (797)
+.++.++|++++|+..+|+. +++++++..+..-. .+...+++| +++|++... +...+..++++...
T Consensus 385 ~dpd~~~ig~v~Rl~~yKr~----dLil~~i~~l~~i~---~~~~~pvq~-V~~Gka~p~d~~gk~~i~~i~~la~~~~~ 456 (601)
T TIGR02094 385 LDPDVLTIGFARRFATYKRA----DLIFRDLERLARIL---NNPERPVQI-VFAGKAHPADGEGKEIIQRIVEFSKRPEF 456 (601)
T ss_pred cCCCCcEEEEEEcchhhhhH----HHHHHHHHHHHHHh---hCCCCCeEE-EEEEecCcccchHHHHHHHHHHHHhcccC
Confidence 45677899999999999554 88999888885321 111246884 899998765 45666666665445
Q ss_pred CCCeEEEec-C-hhhHHHHHHHcCEEEE-ccC-CCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEc-----
Q 003758 172 LEHSVRHYG-F-NGDVNGVLLMADIVLY-GSS-QVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQ----- 242 (797)
Q Consensus 172 ~d~~V~flG-~-~edl~~~L~aADV~V~-PS~-~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd----- 242 (797)
++ +|.|+- . .+--..+++.||+++. ||. +| ++|++=+-||..|.+.+++--|...|.. ++.||+.|.
T Consensus 457 ~~-kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~E--acGtsqMka~~nGgL~~sv~DG~~~E~~-~~~nGf~f~~~~~~ 532 (601)
T TIGR02094 457 RG-RIVFLENYDINLARYLVSGVDVWLNNPRRPLE--ASGTSGMKAAMNGVLNLSILDGWWGEGY-DGDNGWAIGDGEEY 532 (601)
T ss_pred CC-CEEEEcCCCHHHHHHHhhhheeEEeCCCCCcC--CchHHHHHHHHcCCceeecccCcccccC-CCCcEEEECCCccc
Confidence 65 677765 3 3446778999999999 998 88 9999999999999999999988888877 677999998
Q ss_pred -------CCCHHHHHHHHHHHH-----hCccc--HHHHHHHHHHHHHHHH-HhcHHHHHHHHHHHH
Q 003758 243 -------KDNPEGLSRAFSLFI-----SNGKL--SKFARTVASAGRLHAK-NMLALDCVTRYARIL 293 (797)
Q Consensus 243 -------~~D~eeLAeaI~~LL-----edpel--~~~r~~m~~~aRk~ak-~~~s~e~i~~Y~kLL 293 (797)
..|.++|.++|.+.+ ++++. .....++.+++-.... .+.+...+..|.++|
T Consensus 533 ~~~~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 533 DDEEEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred cccccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 488999999997665 22211 1225666666554433 344555588999876
No 100
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=98.73 E-value=8.8e-07 Score=102.98 Aligned_cols=112 Identities=12% Similarity=0.111 Sum_probs=78.5
Q ss_pred hhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcC-----CeEEE-EcC--CCHHHHHHHHH
Q 003758 183 GDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEG-----AQVIF-FQK--DNPEGLSRAFS 254 (797)
Q Consensus 183 edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg-----~nG~L-fd~--~D~eeLAeaI~ 254 (797)
-+..+++..||+.|+||.+| ++|.+-+|+.++|+|.|+||..|....+.+. ..|+. ++- .+.++.+++|.
T Consensus 461 l~Y~dfv~GcdLgvFPSYYE--PWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la 538 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYE--PWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLA 538 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSB--SS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHH
T ss_pred CCHHHHhccCceeeeccccc--cccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHH
Confidence 35889999999999999999 9999999999999999999999877666542 23444 432 44665555555
Q ss_pred HHHh----CcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhc
Q 003758 255 LFIS----NGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVLN 298 (797)
Q Consensus 255 ~LLe----dpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLLe~lL~ 298 (797)
..+. ... ..+..+..++.+.++...|.....-|.+.+..+|+
T Consensus 539 ~~l~~f~~~~~--rqri~~Rn~ae~LS~~~dW~~~~~yY~~Ay~~AL~ 584 (633)
T PF05693_consen 539 DFLYKFCQLSR--RQRIIQRNRAERLSDLADWKNFGKYYEKAYDLALR 584 (633)
T ss_dssp HHHHHHHT--H--HHHHHHHHHHHHHGGGGBHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 5543 332 33666778888888888888888888888888776
No 101
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=98.58 E-value=3.3e-06 Score=96.98 Aligned_cols=211 Identities=12% Similarity=0.073 Sum_probs=150.0
Q ss_pred EEEeCCCCCCchhhhhcccch------hHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhcc
Q 003758 67 FFVIPGSPADVWAVEAYSKSH------EKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNS 140 (797)
Q Consensus 67 i~VIPnsGVDvw~ae~F~~s~------~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~ 140 (797)
+.+.| .|||. +.|.... ....++++++ +..+|+-|.++..- ||+..=++|++.+++.+++..
T Consensus 221 v~~~P-igID~---~~~~~~a~~~~~~~~~~lr~~~~---~~~lilgVDRLDyt----KGi~~rl~Afe~fL~~~Pe~~- 288 (474)
T PRK10117 221 TEVYP-IGIEP---DEIAKQAAGPLPPKLAQLKAELK---NVQNIFSVERLDYS----KGLPERFLAYEALLEKYPQHH- 288 (474)
T ss_pred EEEEE-CeEcH---HHHHHHhhchHHHHHHHHHHHcC---CCeEEEEecccccc----cCHHHHHHHHHHHHHhChhhc-
Confidence 44566 48998 5553321 1234555554 46688888887666 555999999999999998776
Q ss_pred CCCCcEEEEEEeCCCC---CC---HHHHHHHHHHc----CCC-CCeEEEec---ChhhHHHHHHHcCEEEEccCCCCCCc
Q 003758 141 VEGSFKFVFLCGNSTD---GY---NDALQEVASRL----GLL-EHSVRHYG---FNGDVNGVLLMADIVLYGSSQVEQGF 206 (797)
Q Consensus 141 ~~pdvkfLIIvG~g~~---~Y---~e~Leela~el----gL~-d~~V~flG---~~edl~~~L~aADV~V~PS~~Ee~GF 206 (797)
.++.++-|+-.... .| ...+++++.+. |-. -..|+++. +.+++..+|+.|||++.+|..+ |.
T Consensus 289 --gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTplRD--GM 364 (474)
T PRK10117 289 --GKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRD--GM 364 (474)
T ss_pred --CCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEeccccc--cc
Confidence 66775444332211 12 34444444432 211 11256654 5688999999999999999999 99
Q ss_pred cHHHHHHHHhCC-----cEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhc
Q 003758 207 PSLIVRAMTFGI-----PVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNML 281 (797)
Q Consensus 207 PlvLLEAMA~G~-----PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~ 281 (797)
-++.-|+.||.. .+|.|.+.|..+.+. + .++++|.|+++++++|..++.-|. ++++...+..++.+.++.
T Consensus 365 NLVAkEyva~q~~~~~GvLILSefAGaA~~L~-~--AllVNP~d~~~~A~Ai~~AL~Mp~--~Er~~R~~~l~~~v~~~d 439 (474)
T PRK10117 365 NLVAKEYVAAQDPANPGVLVLSQFAGAANELT-S--ALIVNPYDRDEVAAALDRALTMPL--AERISRHAEMLDVIVKND 439 (474)
T ss_pred ccccchheeeecCCCCccEEEecccchHHHhC-C--CeEECCCCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHhhhCC
Confidence 999999999976 388999999999885 3 789999999999999999999876 346666667777788776
Q ss_pred HHHHHHHHHHHHHHHhc
Q 003758 282 ALDCVTRYARILENVLN 298 (797)
Q Consensus 282 s~e~i~~Y~kLLe~lL~ 298 (797)
...-++.++.-+..+..
T Consensus 440 v~~W~~~fL~~L~~~~~ 456 (474)
T PRK10117 440 INHWQECFISDLKQIVP 456 (474)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 66667777776666544
No 102
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=98.55 E-value=6.4e-06 Score=95.06 Aligned_cols=236 Identities=14% Similarity=0.119 Sum_probs=136.7
Q ss_pred HHHHHhccCEEEecCCchHHH-------hhCC--CC-----------CCEEEeCCCCCCchhhhhcccc-------hhHH
Q 003758 38 WKSVFSRVNVIVFPDYTLPML-------YSVL--DA-----------GNFFVIPGSPADVWAVEAYSKS-------HEKY 90 (797)
Q Consensus 38 ~~~~~~~AD~VV~ps~~l~~i-------~~gl--d~-----------~ki~VIPnsGVDvw~ae~F~~s-------~~k~ 90 (797)
....+-.||.|-|.+.....- ..|+ .. -.+.+.|- |||. +.|... ....
T Consensus 191 iL~glL~aDlIgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pi-gId~---~~~~~~~~~~~v~~~~~ 266 (474)
T PF00982_consen 191 ILRGLLGADLIGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPI-GIDP---DAFAQLARSPEVQERAE 266 (474)
T ss_dssp HHHHHTTSSEEEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE-------H---HHHHHHHH-S---HHHH
T ss_pred HHHHhhcCCEEEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeec-cCCh---HHHHhhccChHHHHHHH
Confidence 455777899999876432111 1111 11 12455664 8998 555332 1234
Q ss_pred HHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCC---C---HHHHHH
Q 003758 91 QLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDG---Y---NDALQE 164 (797)
Q Consensus 91 slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~---Y---~e~Lee 164 (797)
.++++++ .+.++|+-+.++..- ||+..-++|+..+++.+|..+ .++.|+-|+-..... | ...+.+
T Consensus 267 ~l~~~~~--~~~~ii~gvDrld~~----kGi~~kl~Afe~fL~~~P~~~---~kv~liQi~~psr~~~~~y~~~~~~v~~ 337 (474)
T PF00982_consen 267 ELREKFK--GKRKIIVGVDRLDYT----KGIPEKLRAFERFLERYPEYR---GKVVLIQIAVPSREDVPEYQELRREVEE 337 (474)
T ss_dssp HHHHHTT--T-SEEEEEE--B-GG----G-HHHHHHHHHHHHHH-GGGT---TTEEEEEE--B-STTSHHHHHHHHHHHH
T ss_pred HHHHhcC--CCcEEEEEeccchhh----cCHHHHHHHHHHHHHhCcCcc---CcEEEEEEeeccCccchhHHHHHHHHHH
Confidence 5566654 234788888887766 556999999999999999776 667754333322111 1 334444
Q ss_pred HHHH----cCCCC-CeEEEec---ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCc----EEEcCCCChhHhh
Q 003758 165 VASR----LGLLE-HSVRHYG---FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIP----VITPDFPIIKEYV 232 (797)
Q Consensus 165 la~e----lgL~d-~~V~flG---~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~P----VIasd~gGi~EiI 232 (797)
++.+ .|-.+ ..|.++. +.+++..+|+.|||++.+|..+ |..++..|+.+|..+ +|.|.+.|..+.+
T Consensus 338 ~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~aDv~lvTslrD--GmNLva~Eyva~q~~~~GvLiLSefaGaa~~L 415 (474)
T PF00982_consen 338 LVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRAADVALVTSLRD--GMNLVAKEYVACQDDNPGVLILSEFAGAAEQL 415 (474)
T ss_dssp HHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH-SEEEE--SSB--S--HHHHHHHHHS-TS--EEEEETTBGGGGT-
T ss_pred HHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHhhhhEEecchhh--ccCCcceEEEEEecCCCCceEeeccCCHHHHc
Confidence 4432 23221 1255554 6788999999999999999999 999999999999876 8889999999999
Q ss_pred hcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Q 003758 233 AEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARI 292 (797)
Q Consensus 233 ~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kL 292 (797)
.++ .++++|.|++++|++|..+++-+. ++++...+..++.+.++....-++.+++-
T Consensus 416 ~~~--al~VNP~d~~~~A~ai~~AL~M~~--~Er~~r~~~~~~~v~~~~~~~W~~~~l~~ 471 (474)
T PF00982_consen 416 SEA--ALLVNPWDIEEVADAIHEALTMPP--EERKERHARLREYVREHDVQWWAESFLRD 471 (474)
T ss_dssp TTS---EEE-TT-HHHHHHHHHHHHT--H--HHHHHHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred CCc--cEEECCCChHHHHHHHHHHHcCCH--HHHHHHHHHHHHHhHhCCHHHHHHHHHHH
Confidence 776 689999999999999999999775 33555566666677766554445444433
No 103
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.37 E-value=3e-05 Score=87.56 Aligned_cols=202 Identities=15% Similarity=0.145 Sum_probs=120.7
Q ss_pred HHHHHhccCEEEecCCchHHHhhCCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEEEEEccccccccc
Q 003758 38 WKSVFSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNEL 117 (797)
Q Consensus 38 ~~~~~~~AD~VV~ps~~l~~i~~gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl 117 (797)
++-.-..|+.|+++...-...+..-. .++.++-| |+- +.+.... + .+++++.++|+++|..-.. ..
T Consensus 154 n~l~~~~a~~v~~~~~~t~~~l~~~g-~k~~~vGn-Pv~----d~l~~~~-~------~~l~~~~~~lllLpGSR~a-e~ 219 (396)
T TIGR03492 154 WLMRSRRCLAVFVRDRLTARDLRRQG-VRASYLGN-PMM----DGLEPPE-R------KPLLTGRFRIALLPGSRPP-EA 219 (396)
T ss_pred HHhhchhhCEEeCCCHHHHHHHHHCC-CeEEEeCc-CHH----hcCcccc-c------cccCCCCCEEEEECCCCHH-HH
Confidence 33345677788877654444433211 25666655 332 1111110 1 1555554555555432212 22
Q ss_pred cccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCC-------------CeEEEecChhh
Q 003758 118 SWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLE-------------HSVRHYGFNGD 184 (797)
Q Consensus 118 ~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d-------------~~V~flG~~ed 184 (797)
.++...+++++..|. +. +++.|++.+....+. +.+++...+.+... +.+.+.....+
T Consensus 220 ~~~lp~~l~al~~L~-------~~-~~~~~v~~~~~~~~~--~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~ 289 (396)
T TIGR03492 220 YRNLKLLLRALEALP-------DS-QPFVFLAAIVPSLSL--EKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGA 289 (396)
T ss_pred HccHHHHHHHHHHHh-------hC-CCeEEEEEeCCCCCH--HHHHHHHHhcCceecCCccccchhhccCceEEEechHh
Confidence 245667777777662 22 678876666444443 66777666555431 13666666778
Q ss_pred HHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCC---hhHhhhcC----CeEEEEcCCCHHHHHHHHHHHH
Q 003758 185 VNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPI---IKEYVAEG----AQVIFFQKDNPEGLSRAFSLFI 257 (797)
Q Consensus 185 l~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gG---i~EiI~Dg----~nG~Lfd~~D~eeLAeaI~~LL 257 (797)
+..+|+.||++|..| |.+..|++++|+|+|....++ ...++... ..+.++...+++.+++++..++
T Consensus 290 ~~~~l~~ADlvI~rS-------Gt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll 362 (396)
T TIGR03492 290 FAEILHWADLGIAMA-------GTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLL 362 (396)
T ss_pred HHHHHHhCCEEEECc-------CHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHH
Confidence 999999999999965 345599999999999876432 22333331 1345556678899999999999
Q ss_pred hCcccHHHHHHHHHHH
Q 003758 258 SNGKLSKFARTVASAG 273 (797)
Q Consensus 258 edpel~~~r~~m~~~a 273 (797)
+|++. +.+|.+++
T Consensus 363 ~d~~~---~~~~~~~~ 375 (396)
T TIGR03492 363 ADPEL---LERCRRNG 375 (396)
T ss_pred cCHHH---HHHHHHHH
Confidence 99876 55665433
No 104
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=98.32 E-value=1.1e-05 Score=97.78 Aligned_cols=184 Identities=10% Similarity=0.027 Sum_probs=129.4
Q ss_pred CCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHH------HHHHHHHHcCC
Q 003758 98 FLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYND------ALQEVASRLGL 171 (797)
Q Consensus 98 L~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e------~Leela~elgL 171 (797)
+.++.++|+++.|+..+|+. .++++.+.+|..-. .+...+++| |++|++...|.. .+.++++...+
T Consensus 474 ldpd~ltigfarRfa~YKR~----~Lil~dl~rl~~il---~~~~~pvQ~-IfaGKAhP~d~~gK~iIk~i~~~a~~p~~ 545 (778)
T cd04299 474 LDPNVLTIGFARRFATYKRA----TLLLRDPERLKRLL---NDPERPVQF-IFAGKAHPADEPGKELIQEIVEFSRRPEF 545 (778)
T ss_pred cCCCccEEeeeecchhhhhH----HHHHHHHHHHHHHh---hCCCCCeEE-EEEEecCccchHHHHHHHHHHHHHhCcCC
Confidence 45677799999999999554 88999888875322 122246884 999998755433 45555554455
Q ss_pred CCCeEEEec-C-hhhHHHHHHHcCEEEEccC--CCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcC----
Q 003758 172 LEHSVRHYG-F-NGDVNGVLLMADIVLYGSS--QVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQK---- 243 (797)
Q Consensus 172 ~d~~V~flG-~-~edl~~~L~aADV~V~PS~--~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~---- 243 (797)
.+ +|.|+- . .+--..+++.|||.+.||. .| .+|++-+-||.-|.+.+++--|-..|.. ++.||+.+..
T Consensus 546 ~~-kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~E--AsGTSgMKA~~NG~LnlSvlDGww~E~~-~g~nGwaig~~~~~ 621 (778)
T cd04299 546 RG-RIVFLEDYDMALARHLVQGVDVWLNTPRRPLE--ASGTSGMKAALNGGLNLSVLDGWWDEGY-DGENGWAIGDGDEY 621 (778)
T ss_pred CC-cEEEEcCCCHHHHHHHHhhhhhcccCCCCCCC--CCccchHHHHHcCCeeeecccCcccccc-CCCCceEeCCCccc
Confidence 65 777776 3 3446778999999999999 88 8889999999999999999999888887 7899999987
Q ss_pred --------CCHHHHHHHHHHHHh----Cc---ccHHHHHHHHHHHHHHHHHhcHH-HHHHHHHHHH
Q 003758 244 --------DNPEGLSRAFSLFIS----NG---KLSKFARTVASAGRLHAKNMLAL-DCVTRYARIL 293 (797)
Q Consensus 244 --------~D~eeLAeaI~~LLe----dp---el~~~r~~m~~~aRk~ak~~~s~-e~i~~Y~kLL 293 (797)
.|.++|.+.|.+.+- +. .......+|.+++.......|+. .++..|.+-+
T Consensus 622 ~~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~ 687 (778)
T cd04299 622 EDDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERF 687 (778)
T ss_pred cChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh
Confidence 567777777765332 21 01122666666665554444444 4466665544
No 105
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.31 E-value=6.5e-05 Score=83.50 Aligned_cols=168 Identities=15% Similarity=0.188 Sum_probs=103.5
Q ss_pred hCCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhc
Q 003758 60 SVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRN 139 (797)
Q Consensus 60 ~gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk 139 (797)
.+++.+++.++.+ ||.. .|... .+...++.+++++++++|+++|..... ..+-+++..++... .
T Consensus 149 ~~~~~~k~~~tG~-Pvr~----~~~~~-~~~~~~~~~~l~~~~~~iLv~GGS~Ga-------~~in~~~~~~l~~l---~ 212 (352)
T PRK12446 149 KHLPKEKVIYTGS-PVRE----EVLKG-NREKGLAFLGFSRKKPVITIMGGSLGA-------KKINETVREALPEL---L 212 (352)
T ss_pred hhCCCCCeEEECC-cCCc----ccccc-cchHHHHhcCCCCCCcEEEEECCccch-------HHHHHHHHHHHHhh---c
Confidence 3455567776654 6663 33221 234556678888887777777642222 22333333332211 1
Q ss_pred cCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecCh-hhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCC
Q 003758 140 SVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN-GDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGI 218 (797)
Q Consensus 140 ~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~-edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~ 218 (797)
.++++++++|.... +... .. .. .+...++. +++..+|+.||++|.- +.+.++.|++++|+
T Consensus 213 ---~~~~vv~~~G~~~~---~~~~---~~--~~--~~~~~~f~~~~m~~~~~~adlvIsr------~G~~t~~E~~~~g~ 273 (352)
T PRK12446 213 ---LKYQIVHLCGKGNL---DDSL---QN--KE--GYRQFEYVHGELPDILAITDFVISR------AGSNAIFEFLTLQK 273 (352)
T ss_pred ---cCcEEEEEeCCchH---HHHH---hh--cC--CcEEecchhhhHHHHHHhCCEEEEC------CChhHHHHHHHcCC
Confidence 24777778885421 2221 11 12 34455765 6899999999999983 55789999999999
Q ss_pred cEEEcCCC---------ChhHhhhcCCeEEEEcC--CCHHHHHHHHHHHHhCccc
Q 003758 219 PVITPDFP---------IIKEYVAEGAQVIFFQK--DNPEGLSRAFSLFISNGKL 262 (797)
Q Consensus 219 PVIasd~g---------Gi~EiI~Dg~nG~Lfd~--~D~eeLAeaI~~LLedpel 262 (797)
|+|....+ ...+.+.+...|..+.. -+++.|.+++..++.|++.
T Consensus 274 P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~ 328 (352)
T PRK12446 274 PMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEK 328 (352)
T ss_pred CEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHH
Confidence 99877543 23345555555666543 3588999999999988764
No 106
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.29 E-value=4.1e-05 Score=85.47 Aligned_cols=183 Identities=15% Similarity=0.123 Sum_probs=110.7
Q ss_pred EEEecCCchH--HHhhCCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCC-CEEEEEEccccc-cccccccHH
Q 003758 47 VIVFPDYTLP--MLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKD-EIVVVVVGSSFF-YNELSWDYA 122 (797)
Q Consensus 47 ~VV~ps~~l~--~i~~gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d-~~vIL~VGrl~~-~KGl~Kn~~ 122 (797)
..++++.... .+.-|.++++++++.+.++|...... ...+..+.+++|++.+ +++++.+-+... +........
T Consensus 147 l~f~~t~~~~~~L~~eg~~~~~i~~tG~~~iD~l~~~~---~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~ 223 (365)
T TIGR03568 147 LHFVATEEYRQRVIQMGEDPDRVFNVGSPGLDNILSLD---LLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIK 223 (365)
T ss_pred hccCCCHHHHHHHHHcCCCCCcEEEECCcHHHHHHhhh---ccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHH
Confidence 4455654333 23568888899999887777522111 1134567788898744 444444433221 111112233
Q ss_pred HHHHHHHHHHHHHhhhccCCCCcEEEEEEeCC-CCCCHHHHHHHHHHcCC-CCCeEEEec--ChhhHHHHHHHcCEEEEc
Q 003758 123 VAMHDVGPLLIKYARRNSVEGSFKFVFLCGNS-TDGYNDALQEVASRLGL-LEHSVRHYG--FNGDVNGVLLMADIVLYG 198 (797)
Q Consensus 123 lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g-~~~Y~e~Leela~elgL-~d~~V~flG--~~edl~~~L~aADV~V~P 198 (797)
.+++++..+ ..++. ++..++ +.. ..+.+.+..+.. .+ +|.+++ ...++..+++.|+++|.-
T Consensus 224 ~li~~L~~~----------~~~~~--vi~P~~~p~~--~~i~~~i~~~~~~~~-~v~l~~~l~~~~~l~Ll~~a~~vitd 288 (365)
T TIGR03568 224 ELLKALDEL----------NKNYI--FTYPNADAGS--RIINEAIEEYVNEHP-NFRLFKSLGQERYLSLLKNADAVIGN 288 (365)
T ss_pred HHHHHHHHh----------ccCCE--EEEeCCCCCc--hHHHHHHHHHhcCCC-CEEEECCCChHHHHHHHHhCCEEEEc
Confidence 444444322 12333 343322 332 344444443321 23 699999 678999999999999974
Q ss_pred cCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHH
Q 003758 199 SSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFI 257 (797)
Q Consensus 199 S~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LL 257 (797)
| +.|+ .||+++|+|||+ .+.-+|.+..+.|++++ ..|++++.+++.+++
T Consensus 289 S-----Sggi--~EA~~lg~Pvv~--l~~R~e~~~~g~nvl~v-g~~~~~I~~a~~~~~ 337 (365)
T TIGR03568 289 S-----SSGI--IEAPSFGVPTIN--IGTRQKGRLRADSVIDV-DPDKEEIVKAIEKLL 337 (365)
T ss_pred C-----hhHH--HhhhhcCCCEEe--ecCCchhhhhcCeEEEe-CCCHHHHHHHHHHHh
Confidence 4 2233 899999999995 45688888888888877 468999999999954
No 107
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.24 E-value=0.00013 Score=89.90 Aligned_cols=240 Identities=10% Similarity=0.059 Sum_probs=156.8
Q ss_pred HHHHHhccCEEEecCCchHHH-------hhCCCC---------------CCEEEeCCCCCCchhhhhcccch-------h
Q 003758 38 WKSVFSRVNVIVFPDYTLPML-------YSVLDA---------------GNFFVIPGSPADVWAVEAYSKSH-------E 88 (797)
Q Consensus 38 ~~~~~~~AD~VV~ps~~l~~i-------~~gld~---------------~ki~VIPnsGVDvw~ae~F~~s~-------~ 88 (797)
....+-.||.|-|.+.....- .-|++. -.+.+.| .|||. ..|.... .
T Consensus 251 iL~glL~aDlIGFht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~P-igId~---~~~~~~~~~~~~~~~ 326 (854)
T PLN02205 251 LLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILP-VGIHM---GQLQSVLSLPETEAK 326 (854)
T ss_pred HHHHHhcCCeEEecCHHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEe-CeEcH---HHHHHHhcChhHHHH
Confidence 444677899999876432211 112211 1244556 48998 5553321 1
Q ss_pred HHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCC---CC---HHHH
Q 003758 89 KYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTD---GY---NDAL 162 (797)
Q Consensus 89 k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~---~Y---~e~L 162 (797)
...++++++- +++++|+-|.++..- ||+..=+.|++.++..+++.+ .++.++-|+-.... .| ...+
T Consensus 327 ~~~l~~~~~~-~~~~~ilgVDrlD~~----KGi~~kl~A~e~~L~~~P~~~---gkvvlvQia~psr~~~~~y~~~~~ev 398 (854)
T PLN02205 327 VKELIKQFCD-QDRIMLLGVDDMDIF----KGISLKLLAMEQLLMQHPEWQ---GKVVLVQIANPARGKGKDVKEVQAET 398 (854)
T ss_pred HHHHHHHhcc-CCCEEEEEccCcccc----cCHHHHHHHHHHHHHhCcccc---CCEEEEEEecCCCcccHHHHHHHHHH
Confidence 2344555431 356788888887665 556999999999999888665 56665434332211 12 3333
Q ss_pred HHHHHH----cCCCC-CeEEEec---ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCC----------------
Q 003758 163 QEVASR----LGLLE-HSVRHYG---FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGI---------------- 218 (797)
Q Consensus 163 eela~e----lgL~d-~~V~flG---~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~---------------- 218 (797)
.+++.+ .|-.+ ..|+++. +.+++..+|+.|||++.++..+ |.-++..|+.+|..
T Consensus 399 ~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT~lRD--GMNLva~Eyia~~~~~~~~~~~~~~~~~~~ 476 (854)
T PLN02205 399 HSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAVRD--GMNLIPYEYIISRQGNEKLDKLLGLEPSTP 476 (854)
T ss_pred HHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHhccEEEeccccc--cccccchheeEEccCccccccccccccccC
Confidence 444433 22211 1366664 5788999999999999999999 99999999999864
Q ss_pred ---cEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 003758 219 ---PVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILEN 295 (797)
Q Consensus 219 ---PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLLe~ 295 (797)
.+|.|.+.|....+. + .++++|.|+++++++|..++..+.. +++..-+..++++.++....-++.+..-++.
T Consensus 477 ~~gvLiLSEfaGaa~~L~-~--Ai~VNP~d~~~~a~ai~~AL~m~~~--Er~~R~~~~~~~v~~~d~~~W~~~fl~~l~~ 551 (854)
T PLN02205 477 KKSMLVVSEFIGCSPSLS-G--AIRVNPWNIDAVADAMDSALEMAEP--EKQLRHEKHYRYVSTHDVGYWARSFLQDLER 551 (854)
T ss_pred CCCceEeeeccchhHHhC-c--CeEECCCCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 378888888888774 3 7899999999999999999998763 3555556667777766555445555544444
Q ss_pred H
Q 003758 296 V 296 (797)
Q Consensus 296 l 296 (797)
+
T Consensus 552 ~ 552 (854)
T PLN02205 552 T 552 (854)
T ss_pred H
Confidence 3
No 108
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.17 E-value=2.9e-05 Score=89.10 Aligned_cols=182 Identities=13% Similarity=0.079 Sum_probs=110.5
Q ss_pred HHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcC
Q 003758 91 QLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLG 170 (797)
Q Consensus 91 slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elg 170 (797)
..|.++|++.+.++++.+.+.. |=....++.+.+++... |+.++ ++...... -.+.+++.+++.|
T Consensus 274 ~~R~~~gLp~d~vvF~~fn~~~------KI~p~~l~~W~~IL~~v-------P~S~L-~L~~~~~~-~~~~l~~~~~~~G 338 (468)
T PF13844_consen 274 TTRAQYGLPEDAVVFGSFNNLF------KISPETLDLWARILKAV-------PNSRL-WLLRFPAS-GEARLRRRFAAHG 338 (468)
T ss_dssp EETGGGT--SSSEEEEE-S-GG------G--HHHHHHHHHHHHHS-------TTEEE-EEEETSTT-HHHHHHHHHHHTT
T ss_pred cCHHHcCCCCCceEEEecCccc------cCCHHHHHHHHHHHHhC-------CCcEE-EEeeCCHH-HHHHHHHHHHHcC
Confidence 3478899999998888877644 44588888888887544 66774 44443322 2478888889999
Q ss_pred CCCCeEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhH-----hhhc-CCeEEEEc
Q 003758 171 LLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKE-----YVAE-GAQVIFFQ 242 (797)
Q Consensus 171 L~d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~E-----iI~D-g~nG~Lfd 242 (797)
+...+|.|.+ ..++....++.+||++=+-.+ +.+.+.+||+.+|+|||+-.-..... ++.. |-..++.
T Consensus 339 v~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~---nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA- 414 (468)
T PF13844_consen 339 VDPDRIIFSPVAPREEHLRRYQLADICLDTFPY---NGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIA- 414 (468)
T ss_dssp S-GGGEEEEE---HHHHHHHGGG-SEEE--SSS-----SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB--
T ss_pred CChhhEEEcCCCCHHHHHHHhhhCCEEeeCCCC---CCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcC-
Confidence 9876899998 455666778999999987555 66899999999999999865332111 1111 2222333
Q ss_pred CCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH--HhcHHHH-HHHHHHHHHH
Q 003758 243 KDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAK--NMLALDC-VTRYARILEN 295 (797)
Q Consensus 243 ~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak--~~~s~e~-i~~Y~kLLe~ 295 (797)
.|.++.++....+..|++. ++.+....++... ..+.... +..+.+.|+.
T Consensus 415 -~s~~eYv~~Av~La~D~~~---l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~ 466 (468)
T PF13844_consen 415 -DSEEEYVEIAVRLATDPER---LRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQ 466 (468)
T ss_dssp -SSHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHhCCHHH---HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHH
Confidence 5799999999999999987 6777666655432 2333322 4566665554
No 109
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=98.13 E-value=0.00011 Score=84.57 Aligned_cols=209 Identities=13% Similarity=0.138 Sum_probs=141.8
Q ss_pred CEEEeCCCCCCchhhhhcccch-------hHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhh
Q 003758 66 NFFVIPGSPADVWAVEAYSKSH-------EKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARR 138 (797)
Q Consensus 66 ki~VIPnsGVDvw~ae~F~~s~-------~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~l 138 (797)
++..+| .|+|+ ..|.... .-..+++.++ .+..+|+-+.++..-|| ...=+.|+++|+.++++.
T Consensus 245 ~v~a~P-IgID~---~~~~~~~~~~~v~~~~~el~~~~~--~~~kiivgvDRlDy~kG----i~~rl~Afe~lL~~~Pe~ 314 (486)
T COG0380 245 KVGAFP-IGIDP---EEFERALKSPSVQEKVLELKAELG--RNKKLIVGVDRLDYSKG----IPQRLLAFERLLEEYPEW 314 (486)
T ss_pred EEEEEe-eecCH---HHHHHhhcCCchhhHHHHHHHHhc--CCceEEEEehhcccccC----cHHHHHHHHHHHHhChhh
Confidence 345567 48998 5553321 1223344433 33678888888776654 499999999999999877
Q ss_pred ccCCCCcEEEEEEeCCCCC---C---HHHHHHHHHHc----CCC-CCeEEEec---ChhhHHHHHHHcCEEEEccCCCCC
Q 003758 139 NSVEGSFKFVFLCGNSTDG---Y---NDALQEVASRL----GLL-EHSVRHYG---FNGDVNGVLLMADIVLYGSSQVEQ 204 (797)
Q Consensus 139 k~~~pdvkfLIIvG~g~~~---Y---~e~Leela~el----gL~-d~~V~flG---~~edl~~~L~aADV~V~PS~~Ee~ 204 (797)
+ .++.++-|+-..... | ...+++++.+. |-. -..|.|+- +.+++..+|+.||+++.+|..+
T Consensus 315 ~---~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVtplrD-- 389 (486)
T COG0380 315 R---GKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLVTPLRD-- 389 (486)
T ss_pred h---CceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhceeeeccccc--
Confidence 6 566654443332221 1 22333333322 211 11355555 5678999999999999999999
Q ss_pred CccHHHHHHHHhCC----cEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHh
Q 003758 205 GFPSLIVRAMTFGI----PVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNM 280 (797)
Q Consensus 205 GFPlvLLEAMA~G~----PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~ 280 (797)
|..++..|+.+|.- |.|-|.+.|....+.+ .++++|.|.++++++|..+|.-+.. ++++.-+...+.+.++
T Consensus 390 GMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L~~---AliVNP~d~~~va~ai~~AL~m~~e--Er~~r~~~~~~~v~~~ 464 (486)
T COG0380 390 GMNLVAKEYVAAQRDKPGVLILSEFAGAASELRD---ALIVNPWDTKEVADAIKRALTMSLE--ERKERHEKLLKQVLTH 464 (486)
T ss_pred cccHHHHHHHHhhcCCCCcEEEeccccchhhhcc---CEeECCCChHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHhh
Confidence 99999999999854 7889999998888866 6899999999999999999987663 3555555666666666
Q ss_pred cHHHHHHHHHHHHH
Q 003758 281 LALDCVTRYARILE 294 (797)
Q Consensus 281 ~s~e~i~~Y~kLLe 294 (797)
....-+..+++-+.
T Consensus 465 d~~~W~~~fl~~la 478 (486)
T COG0380 465 DVARWANSFLDDLA 478 (486)
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555444444
No 110
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=97.85 E-value=0.00065 Score=75.75 Aligned_cols=103 Identities=18% Similarity=0.212 Sum_probs=72.0
Q ss_pred CcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEc
Q 003758 144 SFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 223 (797)
Q Consensus 144 dvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIas 223 (797)
++++++.+|.+... ..+. .+++ +|.+.+.... ..+|..||++|..+ | ..+++||+++|+|+|+.
T Consensus 254 ~~~~i~~~g~~~~~--~~~~------~~~~-~v~~~~~~p~-~~ll~~~~~~I~hg-----G-~~t~~Eal~~G~P~v~~ 317 (392)
T TIGR01426 254 DWHVVLSVGRGVDP--ADLG------ELPP-NVEVRQWVPQ-LEILKKADAFITHG-----G-MNSTMEALFNGVPMVAV 317 (392)
T ss_pred CCeEEEEECCCCCh--hHhc------cCCC-CeEEeCCCCH-HHHHhhCCEEEECC-----C-chHHHHHHHhCCCEEec
Confidence 45656777766542 2222 2344 7888885533 47899999999843 3 35789999999999986
Q ss_pred CCC----ChhHhhhcCCeEEEEcCC--CHHHHHHHHHHHHhCccc
Q 003758 224 DFP----IIKEYVAEGAQVIFFQKD--NPEGLSRAFSLFISNGKL 262 (797)
Q Consensus 224 d~g----Gi~EiI~Dg~nG~Lfd~~--D~eeLAeaI~~LLedpel 262 (797)
... .+.+.+.+...|..++.. ++++++++|.+++.+++.
T Consensus 318 p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~ 362 (392)
T TIGR01426 318 PQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRY 362 (392)
T ss_pred CCcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHHH
Confidence 544 344555565667776543 588999999999998875
No 111
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=97.82 E-value=0.00033 Score=75.44 Aligned_cols=99 Identities=15% Similarity=0.150 Sum_probs=69.2
Q ss_pred CEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecC
Q 003758 102 EIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGF 181 (797)
Q Consensus 102 ~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~ 181 (797)
+.+++++|.....+ + ...+++++..+ ..++++.+++|.+... .+.+++.++.. . +|++.++
T Consensus 171 ~~iLi~~GG~d~~~-~---~~~~l~~l~~~----------~~~~~i~vv~G~~~~~-~~~l~~~~~~~---~-~i~~~~~ 231 (279)
T TIGR03590 171 RRVLVSFGGADPDN-L---TLKLLSALAES----------QINISITLVTGSSNPN-LDELKKFAKEY---P-NIILFID 231 (279)
T ss_pred CeEEEEeCCcCCcC-H---HHHHHHHHhcc----------ccCceEEEEECCCCcC-HHHHHHHHHhC---C-CEEEEeC
Confidence 34677776544331 1 24455555432 2456666788887543 36777766642 2 6899999
Q ss_pred hhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC
Q 003758 182 NGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP 226 (797)
Q Consensus 182 ~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g 226 (797)
.+++.++|+.||++|.+ .|.++.|++++|+|+|+....
T Consensus 232 ~~~m~~lm~~aDl~Is~-------~G~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 232 VENMAELMNEADLAIGA-------AGSTSWERCCLGLPSLAICLA 269 (279)
T ss_pred HHHHHHHHHHCCEEEEC-------CchHHHHHHHcCCCEEEEEec
Confidence 99999999999999993 358999999999999987654
No 112
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=97.73 E-value=0.0036 Score=68.55 Aligned_cols=242 Identities=16% Similarity=0.177 Sum_probs=150.9
Q ss_pred CEEEEEccchhhhhhhhhhhhhHHHHHHHHHH-HHhccCEEEecCCchHH---HhhCCCCCCEEEeCCCCCCchhhhhcc
Q 003758 9 PLVWIIQEDSLANRLPVYVERGFQNLLSYWKS-VFSRVNVIVFPDYTLPM---LYSVLDAGNFFVIPGSPADVWAVEAYS 84 (797)
Q Consensus 9 PVIW~IHE~sL~~rL~~y~~~g~eklls~~~~-~~~~AD~VV~ps~~l~~---i~~gld~~ki~VIPnsGVDvw~ae~F~ 84 (797)
.+.|+|=...|......+ ..++....++ +.++...|++....+.. ...+++. ++...|.. .+. ..
T Consensus 66 q~yWhiWGaDLYe~~~~l----k~rlfy~lRR~aq~rvg~v~atrGD~~~~a~~~~~v~~-~llyfpt~-m~~----~l- 134 (322)
T PRK02797 66 QFYWHIWGADLYEESKGL----KFRLFYPLRRLAQKRVGHVFATRGDLSYFAQRHPKVPG-SLLYFPTR-MDP----SL- 134 (322)
T ss_pred ceEEEEEChhhhhcccch----hHHHHHHHHHHHHhhcCeEEEecchHHHHHHhcCCCCc-cEEecCCc-chh----hh-
Confidence 467888765555322112 2233434443 77888888885433333 2334543 45555541 111 00
Q ss_pred cchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeC--CCCCCHHHH
Q 003758 85 KSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGN--STDGYNDAL 162 (797)
Q Consensus 85 ~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~--g~~~Y~e~L 162 (797)
..... .-..+..+.+.+|+...+ ..+|..+++++.+. .+.++++++-.|- |+..|.+.+
T Consensus 135 ------~~~~~-~~~~~~~~tIlvGNSgd~---SN~Hie~L~~l~~~---------~~~~v~ii~PlsYp~gn~~Yi~~V 195 (322)
T PRK02797 135 ------NTMAN-DRQRAGKMTILVGNSGDR---SNRHIEALRALHQQ---------FGDNVKIIVPMGYPANNQAYIEEV 195 (322)
T ss_pred ------ccccc-cccCCCceEEEEeCCCCC---cccHHHHHHHHHHH---------hCCCeEEEEECCcCCCCHHHHHHH
Confidence 00000 011233466778887766 47888888888655 2577886666676 677788888
Q ss_pred HHHHHHcCCCCCeEEEec---ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEc-CCCChhHhhhcCCeE
Q 003758 163 QEVASRLGLLEHSVRHYG---FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP-DFPIIKEYVAEGAQV 238 (797)
Q Consensus 163 eela~elgL~d~~V~flG---~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIas-d~gGi~EiI~Dg~nG 238 (797)
++.+.++--.+ ++..+- +-++..++++.||+.++.-..- ||+|+ ++-.+.+|+||+.+ +++...++.+.+..-
T Consensus 196 ~~~~~~lF~~~-~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQ-QgiGn-l~lLi~~G~~v~l~r~n~fwqdl~e~gv~V 272 (322)
T PRK02797 196 RQAGLALFGAE-NFQILTEKLPFDDYLALLRQCDLGYFIFARQ-QGIGT-LCLLIQLGKPVVLSRDNPFWQDLTEQGLPV 272 (322)
T ss_pred HHHHHHhcCcc-cEEehhhhCCHHHHHHHHHhCCEEEEeechh-hHHhH-HHHHHHCCCcEEEecCCchHHHHHhCCCeE
Confidence 88888876644 677776 6689999999999999965433 48876 55689999998876 677888888887654
Q ss_pred EEEcCCCH--HHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhc
Q 003758 239 IFFQKDNP--EGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVLN 298 (797)
Q Consensus 239 ~Lfd~~D~--eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLLe~lL~ 298 (797)
+|+.++. ..+.++ .++++..-++.+. ++....++.|.++++.+.+
T Consensus 273 -lf~~d~L~~~~v~e~-------------~rql~~~dk~~I~-Ff~pn~~~~W~~~l~~~~g 319 (322)
T PRK02797 273 -LFTGDDLDEDIVREA-------------QRQLASVDKNIIA-FFSPNYLQGWRNALAIAAG 319 (322)
T ss_pred -EecCCcccHHHHHHH-------------HHHHHhhCcceee-ecCHhHHHHHHHHHHHhhC
Confidence 3543332 222111 2334444444444 7778889999999987754
No 113
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=97.62 E-value=0.00072 Score=75.21 Aligned_cols=99 Identities=19% Similarity=0.137 Sum_probs=72.9
Q ss_pred CcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEc
Q 003758 144 SFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 223 (797)
Q Consensus 144 dvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIas 223 (797)
+.++++.+|..... . ...++ +|.+.+.. ....+|..||++|.- |...++.||+++|+|+|+.
T Consensus 269 ~~~~i~~~g~~~~~--~--------~~~~~-~v~~~~~~-p~~~ll~~~d~~I~h------gG~~t~~eal~~GvP~v~~ 330 (401)
T cd03784 269 GQRAILSLGWGGLG--A--------EDLPD-NVRVVDFV-PHDWLLPRCAAVVHH------GGAGTTAAALRAGVPQLVV 330 (401)
T ss_pred CCeEEEEccCcccc--c--------cCCCC-ceEEeCCC-CHHHHhhhhheeeec------CCchhHHHHHHcCCCEEee
Confidence 35656777765543 1 23455 79988865 467889999999973 4468899999999999988
Q ss_pred CCCC----hhHhhhcCCeEEEEcCC--CHHHHHHHHHHHHhCc
Q 003758 224 DFPI----IKEYVAEGAQVIFFQKD--NPEGLSRAFSLFISNG 260 (797)
Q Consensus 224 d~gG----i~EiI~Dg~nG~Lfd~~--D~eeLAeaI~~LLedp 260 (797)
...+ ..+.+.....|...+.. +.+++.+++.++++++
T Consensus 331 P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~~ 373 (401)
T cd03784 331 PFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDPP 373 (401)
T ss_pred CCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCHH
Confidence 6653 45566666667776554 6899999999999854
No 114
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.61 E-value=0.0021 Score=72.47 Aligned_cols=152 Identities=14% Similarity=0.235 Sum_probs=91.8
Q ss_pred HHHHHHHcCCCCCCEEEEEE-ccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHH
Q 003758 89 KYQLRKENGFLKDEIVVVVV-GSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVAS 167 (797)
Q Consensus 89 k~slR~klGL~~d~~vIL~V-Grl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~ 167 (797)
....++.+ +++++++|++. || ...++.+....+++++..+ +++.++++|++-+. +..+.+.+++...
T Consensus 172 ~~~~~~~~-l~~~~~iIaLLPGS--R~~EI~rllP~~l~aa~~l-------~~~~p~l~fvvp~a--~~~~~~~i~~~~~ 239 (373)
T PF02684_consen 172 RAEAREKL-LDPDKPIIALLPGS--RKSEIKRLLPIFLEAAKLL-------KKQRPDLQFVVPVA--PEVHEELIEEILA 239 (373)
T ss_pred HHHHHHhc-CCCCCcEEEEeCCC--CHHHHHHHHHHHHHHHHHH-------HHhCCCeEEEEecC--CHHHHHHHHHHHH
Confidence 44555666 77777765554 54 3334434445555666555 45678898643332 3222244555555
Q ss_pred HcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEE-EcCCCC----------------hhH
Q 003758 168 RLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVI-TPDFPI----------------IKE 230 (797)
Q Consensus 168 elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVI-asd~gG----------------i~E 230 (797)
..+... .+.. ...+..++|+.||+.+..| |.+.+|++.+|+|.| +...+. ++.
T Consensus 240 ~~~~~~-~~~~--~~~~~~~~m~~ad~al~~S-------GTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~N 309 (373)
T PF02684_consen 240 EYPPDV-SIVI--IEGESYDAMAAADAALAAS-------GTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPN 309 (373)
T ss_pred hhCCCC-eEEE--cCCchHHHHHhCcchhhcC-------CHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechh
Confidence 544432 2322 2346778899999999955 788999999999955 445443 222
Q ss_pred hhhcCC--eEEEEcCCCHHHHHHHHHHHHhCccc
Q 003758 231 YVAEGA--QVIFFQKDNPEGLSRAFSLFISNGKL 262 (797)
Q Consensus 231 iI~Dg~--nG~Lfd~~D~eeLAeaI~~LLedpel 262 (797)
++-+.. .-++-+.-+++.+++++..+++|++.
T Consensus 310 iia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~ 343 (373)
T PF02684_consen 310 IIAGREVVPELIQEDATPENIAAELLELLENPEK 343 (373)
T ss_pred hhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHH
Confidence 222211 12333445799999999999998874
No 115
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=97.51 E-value=0.017 Score=64.13 Aligned_cols=243 Identities=14% Similarity=0.132 Sum_probs=145.0
Q ss_pred CCCEEEEEccchhhhhhhhhhhhhHHHHHHHHH-HHHhccCEEEecCCchHHH---hhCCCCCCEEEeCCCCCCchhhhh
Q 003758 7 SIPLVWIIQEDSLANRLPVYVERGFQNLLSYWK-SVFSRVNVIVFPDYTLPML---YSVLDAGNFFVIPGSPADVWAVEA 82 (797)
Q Consensus 7 ~IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~-~~~~~AD~VV~ps~~l~~i---~~gld~~ki~VIPnsGVDvw~ae~ 82 (797)
.-.+.|+|=...+......+.. ++....+ .+.++...|+.....+... +...+. ....-|. .+|.
T Consensus 103 ~~k~~WhIWGaDLYe~~~~~k~----rlfy~lRr~aq~rvg~V~at~GDl~~~~q~~~~~~~-~~lyfPt-~m~~----- 171 (360)
T PF07429_consen 103 LKKCYWHIWGADLYEDSRSLKF----RLFYFLRRLAQKRVGHVFATRGDLAYFQQRYPRVPA-SLLYFPT-RMDP----- 171 (360)
T ss_pred ccceEEEEeCchhhccccccch----hHHHHHHHHHHhhcCeEEEEcchHHHHHHHcCCCCc-eEEEcCC-CCch-----
Confidence 3457888876655544322222 2233333 3677778887765444433 334443 3555564 3332
Q ss_pred cccchhHHHHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCC--CCCHH
Q 003758 83 YSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNST--DGYND 160 (797)
Q Consensus 83 F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~--~~Y~e 160 (797)
........-..+..+-+.+|....+ ..||..+++++... .+.++++++-.|-|. ..|.+
T Consensus 172 -------~~~~~~~~~~~~~~ltILvGNSgd~---sNnHieaL~~L~~~---------~~~~~kIivPLsYg~~n~~Yi~ 232 (360)
T PF07429_consen 172 -------ALTLSEKNKKNKGKLTILVGNSGDP---SNNHIEALEALKQQ---------FGDDVKIIVPLSYGANNQAYIQ 232 (360)
T ss_pred -------hhhccccccCCCCceEEEEcCCCCC---CccHHHHHHHHHHh---------cCCCeEEEEECCCCCchHHHHH
Confidence 1111111112233466677887777 47888888887654 246778656666553 45778
Q ss_pred HHHHHHHHcCCCCCeEEEec---ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC-ChhHhhhcCC
Q 003758 161 ALQEVASRLGLLEHSVRHYG---FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP-IIKEYVAEGA 236 (797)
Q Consensus 161 ~Leela~elgL~d~~V~flG---~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g-Gi~EiI~Dg~ 236 (797)
.+++.+.++--.. +|..+- +-++..++++.||+.++....- ||.|+ ++-.+.+|+||+.+... ...++.+.+.
T Consensus 233 ~V~~~~~~lF~~~-~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQ-QgiGn-I~lLl~~G~~v~L~~~np~~~~l~~~~i 309 (360)
T PF07429_consen 233 QVIQAGKELFGAE-NFQILTEFMPFDEYLALLSRCDLGIFNHNRQ-QGIGN-ICLLLQLGKKVFLSRDNPFWQDLKEQGI 309 (360)
T ss_pred HHHHHHHHhcCcc-ceeEhhhhCCHHHHHHHHHhCCEEEEeechh-hhHhH-HHHHHHcCCeEEEecCChHHHHHHhCCC
Confidence 8888887765443 577665 6789999999999999987654 48877 56689999999887644 5555555554
Q ss_pred eEEEEc--CCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHh
Q 003758 237 QVIFFQ--KDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVL 297 (797)
Q Consensus 237 nG~Lfd--~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLLe~lL 297 (797)
. +++. .-|...+.++=.++..-.+ ....+|....++.|..++..+.
T Consensus 310 p-Vlf~~d~L~~~~v~ea~rql~~~dk--------------~~iaFf~pny~~~w~~~l~~~~ 357 (360)
T PF07429_consen 310 P-VLFYGDELDEALVREAQRQLANVDK--------------QQIAFFAPNYLQGWRQALRLAA 357 (360)
T ss_pred e-EEeccccCCHHHHHHHHHHHhhCcc--------------cceeeeCCchHHHHHHHHHHHh
Confidence 3 3343 2334445444444433221 1123677777888888876543
No 116
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0022 Score=74.62 Aligned_cols=186 Identities=17% Similarity=0.159 Sum_probs=119.1
Q ss_pred HHHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcC
Q 003758 91 QLRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLG 170 (797)
Q Consensus 91 slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elg 170 (797)
-.|.++|++.+.++++.+++.+ |-...+++....+++.. |+-.|++..|.........++.++++.|
T Consensus 419 ~sR~~lglp~~avVf~c~~n~~------K~~pev~~~wmqIL~~v-------P~Svl~L~~~~~~~~~~~~l~~la~~~G 485 (620)
T COG3914 419 PSRAQLGLPEDAVVFCCFNNYF------KITPEVFALWMQILSAV-------PNSVLLLKAGGDDAEINARLRDLAEREG 485 (620)
T ss_pred cchhhcCCCCCeEEEEecCCcc------cCCHHHHHHHHHHHHhC-------CCcEEEEecCCCcHHHHHHHHHHHHHcC
Confidence 4577899999988888777543 44466777776666543 5556444444323334578889999999
Q ss_pred CCCCeEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEc-------CCCChhHhhhcCCeEEEE
Q 003758 171 LLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP-------DFPIIKEYVAEGAQVIFF 241 (797)
Q Consensus 171 L~d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIas-------d~gGi~EiI~Dg~nG~Lf 241 (797)
+...+++|.+ +.++....|..||+++=+.-+ |...+.+||+-+|+|||+- ..|+ .-+-.-|..-++.
T Consensus 486 v~~eRL~f~p~~~~~~h~a~~~iADlvLDTyPY---~g~TTa~daLwm~vPVlT~~G~~FasR~~~-si~~~agi~e~vA 561 (620)
T COG3914 486 VDSERLRFLPPAPNEDHRARYGIADLVLDTYPY---GGHTTASDALWMGVPVLTRVGEQFASRNGA-SIATNAGIPELVA 561 (620)
T ss_pred CChhheeecCCCCCHHHHHhhchhheeeecccC---CCccchHHHHHhcCceeeeccHHHHHhhhH-HHHHhcCCchhhc
Confidence 9887999999 567889999999999976555 6678999999999999963 2221 1111123333333
Q ss_pred cCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH--hcHHHH-HHHHHHHHHHHhc
Q 003758 242 QKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKN--MLALDC-VTRYARILENVLN 298 (797)
Q Consensus 242 d~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~--~~s~e~-i~~Y~kLLe~lL~ 298 (797)
.+.++.++.-..+=.|..+ +++....-+...++ .+..+. +.++.++|..+.+
T Consensus 562 --~s~~dYV~~av~~g~dral---~q~~r~~l~~~r~tspL~d~~~far~le~~y~~M~~ 616 (620)
T COG3914 562 --DSRADYVEKAVAFGSDRAL---RQQVRAELKRSRQTSPLFDPKAFARKLETLYWGMWS 616 (620)
T ss_pred --CCHHHHHHHHHHhcccHHH---HHhhHHHHHhccccCcccCHHHHHHHHHHHHHHHHH
Confidence 3566666666666666654 44443322222222 344444 5677777776643
No 117
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.43 E-value=0.0077 Score=67.53 Aligned_cols=154 Identities=20% Similarity=0.211 Sum_probs=87.9
Q ss_pred hHHHHHHHcCCCCCCEEE-EEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHH
Q 003758 88 EKYQLRKENGFLKDEIVV-VVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVA 166 (797)
Q Consensus 88 ~k~slR~klGL~~d~~vI-L~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela 166 (797)
++...|+++|++.+..++ +.-|| ...++.+....+.+|++.| +...++++|+ +- -.+..|.....+.+
T Consensus 174 ~r~~ar~~l~~~~~~~~lalLPGS--R~sEI~rl~~~f~~a~~~l-------~~~~~~~~~v-lp-~~~~~~~~~~~~~~ 242 (381)
T COG0763 174 DREAAREKLGIDADEKTLALLPGS--RRSEIRRLLPPFVQAAQEL-------KARYPDLKFV-LP-LVNAKYRRIIEEAL 242 (381)
T ss_pred cHHHHHHHhCCCCCCCeEEEecCC--cHHHHHHHHHHHHHHHHHH-------HhhCCCceEE-Ee-cCcHHHHHHHHHHh
Confidence 466799999998776655 45565 2222322333444444444 4567899963 32 22322222333333
Q ss_pred HHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEE-cCCCC----------------hh
Q 003758 167 SRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVIT-PDFPI----------------IK 229 (797)
Q Consensus 167 ~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIa-sd~gG----------------i~ 229 (797)
....... .++..+ ....+.+..||+.+..| |.+.+|+|.+|+|.|+ ..... .+
T Consensus 243 ~~~~~~~-~~~~~~--~~~~~a~~~aD~al~aS-------GT~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLp 312 (381)
T COG0763 243 KWEVAGL-SLILID--GEKRKAFAAADAALAAS-------GTATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLP 312 (381)
T ss_pred hccccCc-eEEecC--chHHHHHHHhhHHHHhc-------cHHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccch
Confidence 3222211 233332 36778999999999855 7889999999999664 34432 23
Q ss_pred HhhhcCC--eEEEEcCCCHHHHHHHHHHHHhCccc
Q 003758 230 EYVAEGA--QVIFFQKDNPEGLSRAFSLFISNGKL 262 (797)
Q Consensus 230 EiI~Dg~--nG~Lfd~~D~eeLAeaI~~LLedpel 262 (797)
.++.+.. .-++-..-.++.+++++..++.|+..
T Consensus 313 NIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~ 347 (381)
T COG0763 313 NILAGREIVPELIQEDCTPENLARALEELLLNGDR 347 (381)
T ss_pred HHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHh
Confidence 3332211 01111223588999999999998854
No 118
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.38 E-value=0.002 Score=71.70 Aligned_cols=190 Identities=17% Similarity=0.133 Sum_probs=98.3
Q ss_pred cCEEEecCCc--hHHHhhCCCCCCEEEeCCCCCCchhhhhcccchhHHHH-HHHc-CCCCCCEEEEEEcccccccccccc
Q 003758 45 VNVIVFPDYT--LPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQL-RKEN-GFLKDEIVVVVVGSSFFYNELSWD 120 (797)
Q Consensus 45 AD~VV~ps~~--l~~i~~gld~~ki~VIPnsGVDvw~ae~F~~s~~k~sl-R~kl-GL~~d~~vIL~VGrl~~~KGl~Kn 120 (797)
++.-++++.. ...+..|.++.+++++-+.++|..... ........ ...+ +...++++++..=+..... -...
T Consensus 123 a~lhf~~t~~~~~~L~~~G~~~~rI~~vG~~~~D~l~~~---~~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~~~-~~~~ 198 (346)
T PF02350_consen 123 AHLHFAPTEEARERLLQEGEPPERIFVVGNPGIDALLQN---KEEIEEKYKNSGILQDAPKPYILVTLHPVTNED-NPER 198 (346)
T ss_dssp -SEEEESSHHHHHHHHHTT--GGGEEE---HHHHHHHHH---HHTTCC-HHHHHHHHCTTSEEEEEE-S-CCCCT-HH--
T ss_pred hhhhccCCHHHHHHHHhcCCCCCeEEEEChHHHHHHHHh---HHHHhhhhhhHHHHhccCCCEEEEEeCcchhcC-ChHH
Confidence 4566666533 334467999999999987666652110 00000011 1111 1134444444332211110 0012
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEec--ChhhHHHHHHHcCEEEEc
Q 003758 121 YAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYG 198 (797)
Q Consensus 121 ~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG--~~edl~~~L~aADV~V~P 198 (797)
...+..++..|.. . .++.+++...+.+. ....+.+...++ + +|+++. ...++..+++.|+++|.-
T Consensus 199 ~~~i~~~l~~L~~-------~-~~~~vi~~~hn~p~-~~~~i~~~l~~~---~-~v~~~~~l~~~~~l~ll~~a~~vvgd 265 (346)
T PF02350_consen 199 LEQILEALKALAE-------R-QNVPVIFPLHNNPR-GSDIIIEKLKKY---D-NVRLIEPLGYEEYLSLLKNADLVVGD 265 (346)
T ss_dssp HHHHHHHHHHHHH-------H-TTEEEEEE--S-HH-HHHHHHHHHTT----T-TEEEE----HHHHHHHHHHESEEEES
T ss_pred HHHHHHHHHHHHh-------c-CCCcEEEEecCCch-HHHHHHHHhccc---C-CEEEECCCCHHHHHHHHhcceEEEEc
Confidence 3455555555532 1 56775444443332 234444444433 3 688887 567899999999999984
Q ss_pred cCCCCCCccHHHH-HHHHhCCcEEEc-CCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 003758 199 SSQVEQGFPSLIV-RAMTFGIPVITP-DFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 261 (797)
Q Consensus 199 S~~Ee~GFPlvLL-EAMA~G~PVIas-d~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpe 261 (797)
| | .+. ||.++|+|||.- +.+.-++.+..+.+.+ ++ .|++++.++|.+++.+++
T Consensus 266 S-------s-GI~eEa~~lg~P~v~iR~~geRqe~r~~~~nvl-v~-~~~~~I~~ai~~~l~~~~ 320 (346)
T PF02350_consen 266 S-------S-GIQEEAPSLGKPVVNIRDSGERQEGRERGSNVL-VG-TDPEAIIQAIEKALSDKD 320 (346)
T ss_dssp S-------H-HHHHHGGGGT--EEECSSS-S-HHHHHTTSEEE-ET-SSHHHHHHHHHHHHH-HH
T ss_pred C-------c-cHHHHHHHhCCeEEEecCCCCCHHHHhhcceEE-eC-CCHHHHHHHHHHHHhChH
Confidence 3 4 456 999999999988 4556677777776555 65 899999999999998744
No 119
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=97.35 E-value=1.7e-05 Score=78.08 Aligned_cols=106 Identities=21% Similarity=0.349 Sum_probs=67.8
Q ss_pred cEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcC
Q 003758 145 FKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPD 224 (797)
Q Consensus 145 vkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd 224 (797)
+++++++|.... ........ +... +|.++++.+++..+|+.||++|.- +.+.++.|++++|+|.|.-.
T Consensus 32 ~~viv~~G~~~~---~~~~~~~~--~~~~-~v~~~~~~~~m~~~m~~aDlvIs~------aG~~Ti~E~l~~g~P~I~ip 99 (167)
T PF04101_consen 32 IQVIVQTGKNNY---EELKIKVE--NFNP-NVKVFGFVDNMAELMAAADLVISH------AGAGTIAEALALGKPAIVIP 99 (167)
T ss_dssp CCCCCCCTTCEC---HHHCCCHC--CTTC-CCEEECSSSSHHHHHHHHSEEEEC------S-CHHHHHHHHCT--EEEE-
T ss_pred cEEEEEECCCcH---HHHHHHHh--ccCC-cEEEEechhhHHHHHHHcCEEEeC------CCccHHHHHHHcCCCeeccC
Confidence 455567776632 22222222 2223 699999998999999999999983 45689999999999988765
Q ss_pred CCC--------hhHhhhcCCeEEEEcC--CCHHHHHHHHHHHHhCccc
Q 003758 225 FPI--------IKEYVAEGAQVIFFQK--DNPEGLSRAFSLFISNGKL 262 (797)
Q Consensus 225 ~gG--------i~EiI~Dg~nG~Lfd~--~D~eeLAeaI~~LLedpel 262 (797)
.+. ....+.+...|..+.. .+++.|.++|..++.++..
T Consensus 100 ~~~~~~~~q~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~~ 147 (167)
T PF04101_consen 100 LPGAADNHQEENAKELAKKGAAIMLDESELNPEELAEAIEELLSDPEK 147 (167)
T ss_dssp -TTT-T-CHHHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCCHH-
T ss_pred CCCcchHHHHHHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcCcHH
Confidence 554 3334444433444432 3368899999999988864
No 120
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.32 E-value=0.017 Score=68.43 Aligned_cols=159 Identities=11% Similarity=0.135 Sum_probs=88.9
Q ss_pred hHHHHHHHcCCCCCCEEE-EEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHH
Q 003758 88 EKYQLRKENGFLKDEIVV-VVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVA 166 (797)
Q Consensus 88 ~k~slR~klGL~~d~~vI-L~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela 166 (797)
++...++++|++++..+| +.-|| ...++.+....+++|+... .++ ++.+|++ ...+..+.+.+++..
T Consensus 399 ~~~~~r~~lgl~~~~~iIaLLPGS--R~~EI~rllPv~l~aa~~~-----~l~---~~l~fvv--p~a~~~~~~~i~~~~ 466 (608)
T PRK01021 399 PNLSWKEQLHLPSDKPIVAAFPGS--RRGDILRNLTIQVQAFLAS-----SLA---STHQLLV--SSANPKYDHLILEVL 466 (608)
T ss_pred CHHHHHHHcCCCCCCCEEEEECCC--CHHHHHHHHHHHHHHHHHH-----Hhc---cCeEEEE--ecCchhhHHHHHHHH
Confidence 355678899997665544 55565 3333433445555555400 112 3577633 222322235666666
Q ss_pred HHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEE-cCCCC------------------
Q 003758 167 SRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVIT-PDFPI------------------ 227 (797)
Q Consensus 167 ~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIa-sd~gG------------------ 227 (797)
+..+.. .+.++... +-.+++++||+.+..| |.+.+||+.+|+|.|+ ...+.
T Consensus 467 ~~~~~~--~~~ii~~~-~~~~~m~aaD~aLaaS-------GTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIs 536 (608)
T PRK01021 467 QQEGCL--HSHIVPSQ-FRYELMRECDCALAKC-------GTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYS 536 (608)
T ss_pred hhcCCC--CeEEecCc-chHHHHHhcCeeeecC-------CHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeee
Confidence 533321 23444321 2368999999999955 7899999999999664 44442
Q ss_pred hhHhhhcCC--eEEE--EcCCCHHHHHHHHHHHHhCcccHHHHHHHHHH
Q 003758 228 IKEYVAEGA--QVIF--FQKDNPEGLSRAFSLFISNGKLSKFARTVASA 272 (797)
Q Consensus 228 i~EiI~Dg~--nG~L--fd~~D~eeLAeaI~~LLedpel~~~r~~m~~~ 272 (797)
++.++-+.. .-++ -+.-+++.+++++ .++.|++. ++++.+.
T Consensus 537 LpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~---r~~~~~~ 581 (608)
T PRK01021 537 LPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQS---KEKQKDA 581 (608)
T ss_pred hhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHH---HHHHHHH
Confidence 222222211 1223 1345689999886 77877764 4444443
No 121
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.21 E-value=0.017 Score=64.99 Aligned_cols=196 Identities=13% Similarity=0.111 Sum_probs=121.3
Q ss_pred EEEecC--CchHHHhhCCCCCCEEEeCCCCCCchhhhhcccchh--HHHHHHH-cCCCCCCEEEEEEccccccccccccH
Q 003758 47 VIVFPD--YTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHE--KYQLRKE-NGFLKDEIVVVVVGSSFFYNELSWDY 121 (797)
Q Consensus 47 ~VV~ps--~~l~~i~~gld~~ki~VIPnsGVDvw~ae~F~~s~~--k~slR~k-lGL~~d~~vIL~VGrl~~~KGl~Kn~ 121 (797)
+-++|+ ....++..|++.++++|+.|.-+|. -.+..... ....... ++...++.+++..=| +..+-++.
T Consensus 148 ~hfapte~ar~nLl~EG~~~~~IfvtGnt~iDa---l~~~~~~~~~~~~~~~~~~~~~~~~~iLvT~HR---reN~~~~~ 221 (383)
T COG0381 148 LHFAPTEIARKNLLREGVPEKRIFVTGNTVIDA---LLNTRDRVLEDSKILAKGLDDKDKKYILVTAHR---RENVGEPL 221 (383)
T ss_pred hhcCChHHHHHHHHHcCCCccceEEeCChHHHH---HHHHHhhhccchhhHHhhhccccCcEEEEEcch---hhcccccH
Confidence 334554 3334457799999999998754554 22211111 1111222 343334444444433 22222556
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHH-HHcCCCCCeEEEecC--hhhHHHHHHHcCEEEEc
Q 003758 122 AVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVA-SRLGLLEHSVRHYGF--NGDVNGVLLMADIVLYG 198 (797)
Q Consensus 122 ~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela-~elgL~d~~V~flG~--~edl~~~L~aADV~V~P 198 (797)
..+++++..+... ++++. ++....+. ..+++.. ..++-.+ +|+++.+ ..+...++..|-+++.=
T Consensus 222 ~~i~~al~~i~~~-------~~~~~--viyp~H~~---~~v~e~~~~~L~~~~-~v~li~pl~~~~f~~L~~~a~~iltD 288 (383)
T COG0381 222 EEICEALREIAEE-------YPDVI--VIYPVHPR---PRVRELVLKRLKNVE-RVKLIDPLGYLDFHNLMKNAFLILTD 288 (383)
T ss_pred HHHHHHHHHHHHh-------CCCce--EEEeCCCC---hhhhHHHHHHhCCCC-cEEEeCCcchHHHHHHHHhceEEEec
Confidence 7777777777543 35665 45565554 5566655 4555554 6888874 56788999999777763
Q ss_pred cCCCCCCccHHHHHHHHhCCcEEEcCCC-ChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q 003758 199 SSQVEQGFPSLIVRAMTFGIPVITPDFP-IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAG 273 (797)
Q Consensus 199 S~~Ee~GFPlvLLEAMA~G~PVIasd~g-Gi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~a 273 (797)
| |..-=||-.+|+||++-... .-+|.+..|. -.++ ..+.+.+.+++..++++++. +++|+...
T Consensus 289 S-------GgiqEEAp~lg~Pvl~lR~~TERPE~v~agt-~~lv-g~~~~~i~~~~~~ll~~~~~---~~~m~~~~ 352 (383)
T COG0381 289 S-------GGIQEEAPSLGKPVLVLRDTTERPEGVEAGT-NILV-GTDEENILDAATELLEDEEF---YERMSNAK 352 (383)
T ss_pred C-------CchhhhHHhcCCcEEeeccCCCCccceecCc-eEEe-CccHHHHHHHHHHHhhChHH---HHHHhccc
Confidence 3 44557999999999987655 6777776652 3334 46789999999999999987 66665543
No 122
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=97.11 E-value=0.0081 Score=66.65 Aligned_cols=225 Identities=15% Similarity=0.123 Sum_probs=108.4
Q ss_pred CCCCEEEEEccchhhhhhhhhhhhhHHHHHHHHHHHHhccCEEEecCCchHHH---hhCCCCCCEEEeCCCC-CCchhhh
Q 003758 6 HSIPLVWIIQEDSLANRLPVYVERGFQNLLSYWKSVFSRVNVIVFPDYTLPML---YSVLDAGNFFVIPGSP-ADVWAVE 81 (797)
Q Consensus 6 ~~IPVIW~IHE~sL~~rL~~y~~~g~eklls~~~~~~~~AD~VV~ps~~l~~i---~~gld~~ki~VIPnsG-VDvw~ae 81 (797)
.+..+|.+-|..+++........ . ..............|.+++++.....+ ..+++.+++.+... | .|.
T Consensus 98 ~~~~~i~lwHG~~~K~~g~~~~~-~-~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~f~~~~~~i~~~G~-PR~D~---- 170 (369)
T PF04464_consen 98 KNQKYIQLWHGIPLKKIGYDSPD-N-KNYRKNYKRNYRNYDYFIVSSEFEKEIFKKAFGYPEDKILVTGY-PRNDY---- 170 (369)
T ss_dssp TTSEEEE--SS--SB--GGG-S-----TS-HHHHHHHTT-SEEEESSHHHHHHHHHHTT--GGGEEES---GGGHH----
T ss_pred CCcEEEEecCCCcccccchhccc-c-ccchhhhhhhccCCcEEEECCHHHHHHHHHHhccCcceEEEeCC-CeEhH----
Confidence 34678888888765552211111 0 111124555788899999998665555 23666667776532 2 221
Q ss_pred hcccc-hhHHHHHHHcCCCCCCEEEEEEccccccccc--cccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCC
Q 003758 82 AYSKS-HEKYQLRKENGFLKDEIVVVVVGSSFFYNEL--SWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGY 158 (797)
Q Consensus 82 ~F~~s-~~k~slR~klGL~~d~~vIL~VGrl~~~KGl--~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y 158 (797)
-+... .....+++.++++.++.+|+++-+....... .+.....+ .+..|. . ....++. +++-. .
T Consensus 171 l~~~~~~~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~~~~~~~~~-~~~~l~-~-----~~~~~~~-li~k~-H---- 237 (369)
T PF04464_consen 171 LFNKSKENRNRIKKKLGIDKDKKVILYAPTWRDNSSNEYFKFFFSDL-DFEKLN-F-----LLKNNYV-LIIKP-H---- 237 (369)
T ss_dssp HHHSTT-HHHHHHHHTT--SS-EEEEEE----GGG--GGSS----TT--HHHHH-H-----HHTTTEE-EEE---S----
T ss_pred HhccCHHHHHHHHHHhccCCCCcEEEEeecccccccccccccccccc-CHHHHH-H-----HhCCCcE-EEEEe-C----
Confidence 12221 1245778889999999999999542211100 00011111 112221 0 1135666 34433 2
Q ss_pred HHHHHHHHHH-cCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEE--cCCCC-------h
Q 003758 159 NDALQEVASR-LGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVIT--PDFPI-------I 228 (797)
Q Consensus 159 ~e~Leela~e-lgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIa--sd~gG-------i 228 (797)
......... ....+ +|.++....++.++|..||++|. -++.++.|++.+++|||- +|... .
T Consensus 238 -p~~~~~~~~~~~~~~-~i~~~~~~~~~~~ll~~aDiLIT-------DySSi~fD~~~l~KPiify~~D~~~Y~~~rg~~ 308 (369)
T PF04464_consen 238 -PNMKKKFKDFKEDNS-NIIFVSDNEDIYDLLAAADILIT-------DYSSIIFDFLLLNKPIIFYQPDLEEYEKERGFY 308 (369)
T ss_dssp -HHHHTT----TT-TT-TEEE-TT-S-HHHHHHT-SEEEE-------SS-THHHHHGGGT--EEEE-TTTTTTTTTSSBS
T ss_pred -chhhhchhhhhccCC-cEEECCCCCCHHHHHHhcCEEEE-------echhHHHHHHHhCCCEEEEeccHHHHhhccCCC
Confidence 222222222 23334 78888877799999999999998 677899999999999994 44432 1
Q ss_pred hHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCccc
Q 003758 229 KEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKL 262 (797)
Q Consensus 229 ~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel 262 (797)
.+ ..+...|-++ .+.++|.++|..+++++..
T Consensus 309 ~~-~~~~~pg~~~--~~~~eL~~~i~~~~~~~~~ 339 (369)
T PF04464_consen 309 FD-YEEDLPGPIV--YNFEELIEAIENIIENPDE 339 (369)
T ss_dssp S--TTTSSSS-EE--SSHHHHHHHHTTHHHHHHH
T ss_pred Cc-hHhhCCCcee--CCHHHHHHHHHhhhhCCHH
Confidence 22 2222335455 6899999999999876653
No 123
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=96.94 E-value=0.062 Score=63.08 Aligned_cols=116 Identities=13% Similarity=-0.035 Sum_probs=74.7
Q ss_pred CCCCCeEEEecChhhHHHHH--HHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhhcCCeEEEEcC
Q 003758 170 GLLEHSVRHYGFNGDVNGVL--LMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAEGAQVIFFQK 243 (797)
Q Consensus 170 gL~d~~V~flG~~edl~~~L--~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~Dg~nG~Lfd~ 243 (797)
++++ +|.+.+... -.++| ..++++|.- |...++.||+.+|+|+|+-... .....+...+.|...+.
T Consensus 343 ~~p~-Nv~i~~w~P-q~~lL~hp~v~~fItH------GG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~ 414 (507)
T PHA03392 343 NLPA-NVLTQKWFP-QRAVLKHKNVKAFVTQ------GGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDT 414 (507)
T ss_pred cCCC-ceEEecCCC-HHHHhcCCCCCEEEec------CCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEecc
Confidence 3555 788888432 24567 458888872 5567889999999999987655 35555555566877765
Q ss_pred C--CHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHH--HHHHHHHHHHHHhcCC
Q 003758 244 D--NPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALD--CVTRYARILENVLNFP 300 (797)
Q Consensus 244 ~--D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e--~i~~Y~kLLe~lL~~p 300 (797)
. +.++|.++|.++++|+.. + +++++.++.+-... -.+.-...++.+++.+
T Consensus 415 ~~~t~~~l~~ai~~vl~~~~y---~----~~a~~ls~~~~~~p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 415 VTVSAAQLVLAIVDVIENPKY---R----KNLKELRHLIRHQPMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred CCcCHHHHHHHHHHHhCCHHH---H----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Confidence 4 578999999999999875 2 23333333322221 2444455556666654
No 124
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=96.90 E-value=0.014 Score=62.68 Aligned_cols=76 Identities=21% Similarity=0.279 Sum_probs=57.1
Q ss_pred eEEEecCh-hhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCC------hhHhhhcCCeEEEEcC--CC
Q 003758 175 SVRHYGFN-GDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPI------IKEYVAEGAQVIFFQK--DN 245 (797)
Q Consensus 175 ~V~flG~~-edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gG------i~EiI~Dg~nG~Lfd~--~D 245 (797)
+|++.+.. .++.++|+.||++|..+ | -.++.||+++|+|+|+-...+ ..+.+....-|..++. -+
T Consensus 233 ni~~~~~~~~~~~~~m~~ad~vIs~~-----G-~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~ 306 (318)
T PF13528_consen 233 NIHVRPFSTPDFAELMAAADLVISKG-----G-YTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLT 306 (318)
T ss_pred CEEEeecChHHHHHHHHhCCEEEECC-----C-HHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCC
Confidence 79999954 89999999999999953 2 245899999999999888765 3344555555666543 35
Q ss_pred HHHHHHHHHHH
Q 003758 246 PEGLSRAFSLF 256 (797)
Q Consensus 246 ~eeLAeaI~~L 256 (797)
++.|.++|.++
T Consensus 307 ~~~l~~~l~~~ 317 (318)
T PF13528_consen 307 PERLAEFLERL 317 (318)
T ss_pred HHHHHHHHhcC
Confidence 78888888754
No 125
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=96.84 E-value=0.016 Score=63.38 Aligned_cols=80 Identities=18% Similarity=0.115 Sum_probs=62.0
Q ss_pred eEEEecCh-hhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCC------hhHhhhcCCeEEEEcCCCHH
Q 003758 175 SVRHYGFN-GDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPI------IKEYVAEGAQVIFFQKDNPE 247 (797)
Q Consensus 175 ~V~flG~~-edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gG------i~EiI~Dg~nG~Lfd~~D~e 247 (797)
+|.+.+.. +++..+|..||++|..+ | ..++.||+++|+|+|....++ ....+.+...|...+..+.
T Consensus 230 ~v~~~~~~~~~~~~~l~~ad~vI~~~-----G-~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~- 302 (321)
T TIGR00661 230 NVEIRRITTDNFKELIKNAELVITHG-----G-FSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL- 302 (321)
T ss_pred CEEEEECChHHHHHHHHhCCEEEECC-----C-hHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH-
Confidence 78888855 58999999999999954 2 246899999999999988765 3334556666888887777
Q ss_pred HHHHHHHHHHhCcc
Q 003758 248 GLSRAFSLFISNGK 261 (797)
Q Consensus 248 eLAeaI~~LLedpe 261 (797)
++.+++..++.++.
T Consensus 303 ~~~~~~~~~~~~~~ 316 (321)
T TIGR00661 303 RLLEAILDIRNMKR 316 (321)
T ss_pred HHHHHHHhcccccc
Confidence 67777777776665
No 126
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=96.61 E-value=0.047 Score=62.27 Aligned_cols=85 Identities=19% Similarity=0.143 Sum_probs=67.9
Q ss_pred CCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhhcCCeEEEEc--C
Q 003758 170 GLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAEGAQVIFFQ--K 243 (797)
Q Consensus 170 gL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~Dg~nG~Lfd--~ 243 (797)
++++ ++...+.. ....++..||++|.. |.-.++.||+.+|+|+|+-..+ ...+.+.+-..|...+ .
T Consensus 281 ~~p~-n~~v~~~~-p~~~~l~~ad~vI~h------GG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~ 352 (406)
T COG1819 281 NVPD-NVIVADYV-PQLELLPRADAVIHH------GGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEE 352 (406)
T ss_pred cCCC-ceEEecCC-CHHHHhhhcCEEEec------CCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCccc
Confidence 5665 77777743 234589999999995 4456789999999999976555 4777788888888876 5
Q ss_pred CCHHHHHHHHHHHHhCccc
Q 003758 244 DNPEGLSRAFSLFISNGKL 262 (797)
Q Consensus 244 ~D~eeLAeaI~~LLedpel 262 (797)
-+.+.|+++|.+++.++..
T Consensus 353 l~~~~l~~av~~vL~~~~~ 371 (406)
T COG1819 353 LTEERLRAAVNEVLADDSY 371 (406)
T ss_pred CCHHHHHHHHHHHhcCHHH
Confidence 7899999999999999886
No 127
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=96.25 E-value=0.18 Score=56.37 Aligned_cols=182 Identities=16% Similarity=0.145 Sum_probs=102.0
Q ss_pred HHhccCEEEecCCchHHH--hhCCCCCCEEEeCCCCCCchh-hhhcccchhHHHHHHHcCCCCCCEEEEEEccccc-ccc
Q 003758 41 VFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWA-VEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFF-YNE 116 (797)
Q Consensus 41 ~~~~AD~VV~ps~~l~~i--~~gld~~ki~VIPnsGVDvw~-ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~-~KG 116 (797)
.+--+|.|++|...-... ..|.+ +++...+ |++.++ -..|.+ .+.+.+++|+++++.+++=...... +..
T Consensus 122 t~Pla~~i~~P~~~~~~~~~~~G~~-~~i~~y~--G~~E~ayl~~F~P---d~~vl~~lg~~~~~yIvvR~~~~~A~y~~ 195 (335)
T PF04007_consen 122 TLPLADVIITPEAIPKEFLKRFGAK-NQIRTYN--GYKELAYLHPFKP---DPEVLKELGLDDEPYIVVRPEAWKASYDN 195 (335)
T ss_pred ehhcCCeeECCcccCHHHHHhcCCc-CCEEEEC--CeeeEEeecCCCC---ChhHHHHcCCCCCCEEEEEeccccCeeec
Confidence 345688888886543322 23444 4565555 444311 012332 4567789998766544432222111 211
Q ss_pred ccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEE
Q 003758 117 LSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVL 196 (797)
Q Consensus 117 l~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V 196 (797)
. ....+-+.+..|. + ..+. ++++...... . ++.+.. .+.+....-+...++..||++|
T Consensus 196 ~--~~~i~~~ii~~L~-------~-~~~~--vV~ipr~~~~--~---~~~~~~-----~~~i~~~~vd~~~Ll~~a~l~I 253 (335)
T PF04007_consen 196 G--KKSILPEIIEELE-------K-YGRN--VVIIPRYEDQ--R---ELFEKY-----GVIIPPEPVDGLDLLYYADLVI 253 (335)
T ss_pred C--ccchHHHHHHHHH-------h-hCce--EEEecCCcch--h---hHHhcc-----CccccCCCCCHHHHHHhcCEEE
Confidence 1 1122233333331 1 1222 2444443332 2 222222 2444554446668999999999
Q ss_pred EccCCCCCCccHHHHHHHHhCCcEEEcCCC---ChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhC
Q 003758 197 YGSSQVEQGFPSLIVRAMTFGIPVITPDFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN 259 (797)
Q Consensus 197 ~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g---Gi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLed 259 (797)
. +.|.-..||...|+|+|.+-.+ ++-+++.+. |+++...|++++.+.+...+..
T Consensus 254 g-------~ggTMa~EAA~LGtPaIs~~~g~~~~vd~~L~~~--Gll~~~~~~~ei~~~v~~~~~~ 310 (335)
T PF04007_consen 254 G-------GGGTMAREAALLGTPAISCFPGKLLAVDKYLIEK--GLLYHSTDPDEIVEYVRKNLGK 310 (335)
T ss_pred e-------CCcHHHHHHHHhCCCEEEecCCcchhHHHHHHHC--CCeEecCCHHHHHHHHHHhhhc
Confidence 9 6678889999999999986543 454566554 8899999999999977665543
No 128
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=96.18 E-value=0.088 Score=63.83 Aligned_cols=138 Identities=10% Similarity=-0.015 Sum_probs=97.1
Q ss_pred CCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCC--HHHHHH----HHHHcCC
Q 003758 98 FLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGY--NDALQE----VASRLGL 171 (797)
Q Consensus 98 L~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y--~e~Lee----la~elgL 171 (797)
+.++...++++=|+..||.. .+.+.-+..|.....+ +..+.+. ++++|+.-..| -..+.+ .++..+.
T Consensus 483 ~~p~~lfd~~~kRiheYKRq----~Lnl~~i~~ly~~i~~--d~~prv~-~iFaGKAhP~y~~aK~iIk~I~~~a~~in~ 555 (750)
T COG0058 483 VDPNALFDGQARRIHEYKRQ----LLNLLDIERLYRILKE--DWVPRVQ-IIFAGKAHPADYAAKEIIKLINDVADVINN 555 (750)
T ss_pred cCCCcceeeeehhhhhhhhh----HHhHhhHHHHHHHHhc--CCCCceE-EEEeccCCCcchHHHHHHHHHHHHHHhhcc
Confidence 45677888999899999644 5554444455443332 3456677 48888865555 122222 3333344
Q ss_pred CCCeEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhh--cCCeEEEEcC
Q 003758 172 LEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVA--EGAQVIFFQK 243 (797)
Q Consensus 172 ~d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~--Dg~nG~Lfd~ 243 (797)
.. +|.|+. ..+-...++.+|||-...|..--+..|.+-+-||.-|.|.|++--|...|+.+ ++.||++|..
T Consensus 556 ~l-kVvFl~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG~ 630 (750)
T COG0058 556 KL-KVVFLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFGE 630 (750)
T ss_pred cc-eEEEeCCCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeCC
Confidence 33 688888 34456778999999998765544488888899999999999999999999997 8899999953
No 129
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=95.87 E-value=0.068 Score=61.69 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=59.0
Q ss_pred eEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhhcCCeEEEEcCC--CHHH
Q 003758 175 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAEGAQVIFFQKD--NPEG 248 (797)
Q Consensus 175 ~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~Dg~nG~Lfd~~--D~ee 248 (797)
++.+...... .++|+...+-++-|+ |.-.++.||+.+|+|+|+-..- .....+.+.+.|...+.. +.++
T Consensus 324 n~~~~~W~PQ-~~lL~hp~v~~fitH----gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~ 398 (500)
T PF00201_consen 324 NVLIVKWLPQ-NDLLAHPRVKLFITH----GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEE 398 (500)
T ss_dssp TEEEESS--H-HHHHTSTTEEEEEES------HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHH
T ss_pred eEEEeccccc-hhhhhcccceeeeec----cccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHH
Confidence 5777773322 356766655444333 6678899999999999987654 355555555568888654 4789
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHH--HHHHHHHHHHHHHhcCCCC
Q 003758 249 LSRAFSLFISNGKLSKFARTVASAGRLHAKNMLAL--DCVTRYARILENVLNFPSD 302 (797)
Q Consensus 249 LAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~--e~i~~Y~kLLe~lL~~pse 302 (797)
+.++|.++++|+.. .+++++.++-+-.. .-.+.-....|-+++.++.
T Consensus 399 l~~ai~~vl~~~~y-------~~~a~~ls~~~~~~p~~p~~~~~~~ie~v~~~~~~ 447 (500)
T PF00201_consen 399 LRAAIREVLENPSY-------KENAKRLSSLFRDRPISPLERAVWWIEYVARHGGA 447 (500)
T ss_dssp HHHHHHHHHHSHHH-------HHHHHHHHHTTT-----------------------
T ss_pred HHHHHHHHHhhhHH-------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999865 23344444333222 1144555566666665433
No 130
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.86 E-value=2.1 Score=49.50 Aligned_cols=205 Identities=9% Similarity=0.064 Sum_probs=105.8
Q ss_pred HHHHHhccCEEEecCCchHHH--hhCCCCCCEEEeCCCCCCchhhhhcccchh------HHHHHHHcCCCCCCEEEEEEc
Q 003758 38 WKSVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADVWAVEAYSKSHE------KYQLRKENGFLKDEIVVVVVG 109 (797)
Q Consensus 38 ~~~~~~~AD~VV~ps~~l~~i--~~gld~~ki~VIPnsGVDvw~ae~F~~s~~------k~slR~klGL~~d~~vIL~VG 109 (797)
.+..++++|.|.+-+..-..+ ..|++..++.+.|-. .|.-+.. ...+....+......+|++.-
T Consensus 170 ~r~vl~~~~~ItvRD~~S~~~Lk~lGv~~~~v~~~aDp--------AF~L~~~~~~~~~~~~~~~~~~~~~~~~~Vgisv 241 (426)
T PRK10017 170 ANYVFGHCDALILRESVSLDLMKRSNITTAKVEHGVDT--------AWLVDHHTEDFTASYAVQHWLDVAAQQKTVAITL 241 (426)
T ss_pred HHHHHhcCCEEEEccHHHHHHHHHhCCCccceEEecCh--------hhhCCccccccccchhhhhhhcccccCCEEEEEe
Confidence 455789999998876443333 458877788876641 1211100 011112223323333554443
Q ss_pred cccc-c-ccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeC----CCCCCHHHHHHHHHHcCCCCCeEEEec---
Q 003758 110 SSFF-Y-NELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGN----STDGYNDALQEVASRLGLLEHSVRHYG--- 180 (797)
Q Consensus 110 rl~~-~-KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~----g~~~Y~e~Leela~elgL~d~~V~flG--- 180 (797)
+... . ++.........+.+..++.... +++-++.|+-.+.. +++. ....+++.+.+.-+. +++++.
T Consensus 242 r~~~~~~~~~~~~~~~Y~~~la~~i~~Li---~~g~~Vv~lp~~~~~~~~~~dD-~~~~~~l~~~~~~~~-~~~vi~~~~ 316 (426)
T PRK10017 242 RELAPFDKRLGTTQQAYEKAFAGVVNRII---DEGYQVIALSTCTGIDSYNKDD-RMVALNLRQHVSDPA-RYHVVMDEL 316 (426)
T ss_pred cccccccccccccHHHHHHHHHHHHHHHH---HCCCeEEEEecccCccCCCCch-HHHHHHHHHhccccc-ceeEecCCC
Confidence 3221 1 1110011233344444443332 22344443322211 1221 233345556555433 444433
Q ss_pred ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC-ChhHhhhc-CCeEEEEcC--CCHHHHHHHHHHH
Q 003758 181 FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP-IIKEYVAE-GAQVIFFQK--DNPEGLSRAFSLF 256 (797)
Q Consensus 181 ~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g-Gi~EiI~D-g~nG~Lfd~--~D~eeLAeaI~~L 256 (797)
...++..+++.||++|- ++. -.++-|++.|+|+|+-... -+..++.+ |...++++. -+.++|.+.+.++
T Consensus 317 ~~~e~~~iIs~~dl~ig-~Rl------Ha~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~ 389 (426)
T PRK10017 317 NDLEMGKILGACELTVG-TRL------HSAIISMNFGTPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADT 389 (426)
T ss_pred ChHHHHHHHhhCCEEEE-ecc------hHHHHHHHcCCCEEEeeehHHHHHHHHHcCCccEEechhhCCHHHHHHHHHHH
Confidence 34578899999999887 444 3568899999999986654 23333332 222344443 3578899999999
Q ss_pred HhCccc
Q 003758 257 ISNGKL 262 (797)
Q Consensus 257 Ledpel 262 (797)
+++.+.
T Consensus 390 ~~~r~~ 395 (426)
T PRK10017 390 LGQLPA 395 (426)
T ss_pred HhCHHH
Confidence 988764
No 131
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=95.65 E-value=0.14 Score=58.31 Aligned_cols=103 Identities=12% Similarity=0.184 Sum_probs=65.7
Q ss_pred hHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCCh----hHhhhcCC-eEEEE-c--CCC----HHHHHH
Q 003758 184 DVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPII----KEYVAEGA-QVIFF-Q--KDN----PEGLSR 251 (797)
Q Consensus 184 dl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi----~EiI~Dg~-nG~Lf-d--~~D----~eeLAe 251 (797)
|..++.+.|++.|+||++| +.|.+-.|+--+|+|.|+++.+|. .|.|.+.. -|+.+ + ... .+.|++
T Consensus 493 DYeeFVRGCHLGVFPSYYE--PWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~~ 570 (692)
T KOG3742|consen 493 DYEEFVRGCHLGVFPSYYE--PWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLAS 570 (692)
T ss_pred CHHHHhccccccccccccC--CCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHHH
Confidence 5778999999999999999 889999999999999999999864 45555433 25443 2 123 444554
Q ss_pred HHHHHHhCcccHHHHHHHHH-HHHHHHHHhcHHHHHH-HHHHH
Q 003758 252 AFSLFISNGKLSKFARTVAS-AGRLHAKNMLALDCVT-RYARI 292 (797)
Q Consensus 252 aI~~LLedpel~~~r~~m~~-~aRk~ak~~~s~e~i~-~Y~kL 292 (797)
-|........ ++.+.+ +--+.......++.+- -|.+.
T Consensus 571 ~m~~F~~qsR----RQRIiqRNrtErLSdLLDWk~lG~~Y~~a 609 (692)
T KOG3742|consen 571 FMYEFCKQSR----RQRIIQRNRTERLSDLLDWKYLGRYYRKA 609 (692)
T ss_pred HHHHHHHHHH----HHHHHHhcchhhHHHHHhHHHHhHHHHHH
Confidence 4444443332 444433 3334455555555543 44443
No 132
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.44 E-value=0.44 Score=52.71 Aligned_cols=118 Identities=18% Similarity=0.180 Sum_probs=66.6
Q ss_pred HHHHHcCCCCCCEEEEEEccccccccccccHH---HHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHH
Q 003758 91 QLRKENGFLKDEIVVVVVGSSFFYNELSWDYA---VAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVAS 167 (797)
Q Consensus 91 slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~---lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~ 167 (797)
.+...++-.+.+.+.+.||.-... ...+.+ .+++.+..+.. .+. ..+ .|...-... ..+.+...
T Consensus 136 ~~~~~~~~l~~p~~avLIGG~s~~--~~~~~~~~~~l~~~l~~~~~-------~~~-~~~-~vttSRRTp--~~~~~~L~ 202 (311)
T PF06258_consen 136 AWAPRLAALPRPRVAVLIGGDSKH--YRWDEEDAERLLDQLAALAA-------AYG-GSL-LVTTSRRTP--PEAEAALR 202 (311)
T ss_pred hhhhhhccCCCCeEEEEECcCCCC--cccCHHHHHHHHHHHHHHHH-------hCC-CeE-EEEcCCCCc--HHHHHHHH
Confidence 333445533445566666643222 223444 44444444432 222 563 445443332 44444443
Q ss_pred -HcCCCCCeEEEec-Chh-hHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCC
Q 003758 168 -RLGLLEHSVRHYG-FNG-DVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPI 227 (797)
Q Consensus 168 -elgL~d~~V~flG-~~e-dl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gG 227 (797)
.++-.. .+.+.. ..+ -+..+|+.||.++++.-.- .-+.||++.|+||.+...++
T Consensus 203 ~~~~~~~-~~~~~~~~~~nPy~~~La~ad~i~VT~DSv-----SMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 203 ELLKDNP-GVYIWDGTGENPYLGFLAAADAIVVTEDSV-----SMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred HhhcCCC-ceEEecCCCCCcHHHHHHhCCEEEEcCccH-----HHHHHHHHcCCCEEEecCCC
Confidence 333333 564444 333 3889999999999976443 55899999999999988776
No 133
>PLN02562 UDP-glycosyltransferase
Probab=95.40 E-value=0.23 Score=57.46 Aligned_cols=83 Identities=6% Similarity=-0.010 Sum_probs=57.7
Q ss_pred eEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhhc-CCeEEEEcCCCHHHH
Q 003758 175 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAE-GAQVIFFQKDNPEGL 249 (797)
Q Consensus 175 ~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~D-g~nG~Lfd~~D~eeL 249 (797)
++.+.+.. .-..+|+..++.++-|+ +.-++++||+++|+|+|+-... .....+.+ -+.|+-+..-+.+++
T Consensus 329 ~~~v~~w~-PQ~~iL~h~~v~~fvtH----~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~l 403 (448)
T PLN02562 329 QGKVVSWA-PQLEVLKHQAVGCYLTH----CGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFGQKEV 403 (448)
T ss_pred CEEEEecC-CHHHHhCCCccceEEec----CcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCCHHHH
Confidence 56666622 23456777776554443 3457889999999999986544 45555544 245666655678999
Q ss_pred HHHHHHHHhCccc
Q 003758 250 SRAFSLFISNGKL 262 (797)
Q Consensus 250 AeaI~~LLedpel 262 (797)
++++.+++.+++.
T Consensus 404 ~~~v~~~l~~~~~ 416 (448)
T PLN02562 404 EEGLRKVMEDSGM 416 (448)
T ss_pred HHHHHHHhCCHHH
Confidence 9999999988765
No 134
>PRK14986 glycogen phosphorylase; Provisional
Probab=95.40 E-value=0.2 Score=61.43 Aligned_cols=153 Identities=10% Similarity=0.019 Sum_probs=99.1
Q ss_pred HHHcC--CCCCCEEEEEEccccccccccccHHH-HHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCC--HHHHHHHHH
Q 003758 93 RKENG--FLKDEIVVVVVGSSFFYNELSWDYAV-AMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGY--NDALQEVAS 167 (797)
Q Consensus 93 R~klG--L~~d~~vIL~VGrl~~~KGl~Kn~~l-LLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y--~e~Leela~ 167 (797)
+++.| +.++...++++-|+..||.. .+ ++..+..+..-...-.....+.. +|++|+....| -..+.+++.
T Consensus 532 ~~~~g~~ldp~sLfd~qakR~heYKRq----~LNil~~i~ry~~i~~~p~~~~~P~~-~IFaGKAaP~y~~aK~iIk~I~ 606 (815)
T PRK14986 532 AQQLNVVVNPKALFDVQIKRIHEYKRQ----LMNVLHVITRYNRIKADPDAKWVPRV-NIFAGKAASAYYMAKHIIHLIN 606 (815)
T ss_pred HHHhCCccCcccceeeeehhhhhhhhh----hHHHhhhHHHHHHHHhCCCcCCCCeE-EEEeecCCCCcHHHHHHHHHHH
Confidence 34445 56777788889889999644 44 66665554321111000113567 48899866665 223333332
Q ss_pred HcCC-------CCC--eEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhc--
Q 003758 168 RLGL-------LEH--SVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE-- 234 (797)
Q Consensus 168 elgL-------~d~--~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~D-- 234 (797)
...- -.+ +|.|+. ..+--..++.+|||-...|..-.+..|..-+-||.-|.+.|++--|...|+.++
T Consensus 607 ~va~~in~Dp~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG 686 (815)
T PRK14986 607 DVAKVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVG 686 (815)
T ss_pred HHHHHhccChhhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcC
Confidence 2211 011 477777 345677899999999987754434777888999999999999999999999986
Q ss_pred CCeEEEEcCCCHHHHHH
Q 003758 235 GAQVIFFQKDNPEGLSR 251 (797)
Q Consensus 235 g~nG~Lfd~~D~eeLAe 251 (797)
+.||++|. .+.+++.+
T Consensus 687 ~eN~~~fG-~~~~ev~~ 702 (815)
T PRK14986 687 EENIFIFG-NTAEEVEA 702 (815)
T ss_pred CCcEEEeC-CCHHHHHH
Confidence 78999995 33444443
No 135
>PLN03007 UDP-glucosyltransferase family protein
Probab=94.91 E-value=0.68 Score=54.05 Aligned_cols=81 Identities=11% Similarity=0.016 Sum_probs=52.5
Q ss_pred eEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhhc-CCeEEEE--------
Q 003758 175 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAE-GAQVIFF-------- 241 (797)
Q Consensus 175 ~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~D-g~nG~Lf-------- 241 (797)
++.+.+.... ..+|..+++-++-|+ +.-++++||+++|+|+|+-... ....++.+ -+.|+-+
T Consensus 346 g~~v~~w~PQ-~~iL~h~~v~~fvtH----~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~ 420 (482)
T PLN03007 346 GLIIRGWAPQ-VLILDHQATGGFVTH----CGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKV 420 (482)
T ss_pred CEEEecCCCH-HHHhccCccceeeec----CcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEecccccccc
Confidence 5777773322 467888887444443 3357889999999999986654 23333322 1223332
Q ss_pred --cCCCHHHHHHHHHHHHhCc
Q 003758 242 --QKDNPEGLSRAFSLFISNG 260 (797)
Q Consensus 242 --d~~D~eeLAeaI~~LLedp 260 (797)
..-+.+++.+++..++.++
T Consensus 421 ~~~~~~~~~l~~av~~~m~~~ 441 (482)
T PLN03007 421 KGDFISREKVEKAVREVIVGE 441 (482)
T ss_pred ccCcccHHHHHHHHHHHhcCc
Confidence 1236889999999999887
No 136
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=94.75 E-value=0.25 Score=60.53 Aligned_cols=153 Identities=14% Similarity=0.054 Sum_probs=99.7
Q ss_pred HHHHcC--CCCCCEEEEEEccccccccccccHHH-HHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCC--HHHHHHHH
Q 003758 92 LRKENG--FLKDEIVVVVVGSSFFYNELSWDYAV-AMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGY--NDALQEVA 166 (797)
Q Consensus 92 lR~klG--L~~d~~vIL~VGrl~~~KGl~Kn~~l-LLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y--~e~Leela 166 (797)
++++.| ++++...++++-|+..||.. .+ ++..+..+..-...-.....+.. ++++|+....| -..+.+++
T Consensus 515 i~~~~g~~ldp~slfdvq~KR~heYKRq----~LNil~ii~~y~~i~~~p~~~~~P~~-~IFaGKAaP~y~~aK~iIklI 589 (794)
T TIGR02093 515 IKEHTGVEVDPNSIFDVQVKRLHEYKRQ----LLNVLHVIYLYNRIKEDPPKDIVPRT-VIFGGKAAPGYHMAKLIIKLI 589 (794)
T ss_pred HHHhcCCccCccccchhhheechhhhHH----HHHHhhhHHHHHHHHhCCCcCCCCeE-EEEEecCCCCcHHHHHHHHHH
Confidence 344555 56777778888888988644 44 55555544321111010112456 48899876666 23334444
Q ss_pred HHcC--------CCCC--eEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhc
Q 003758 167 SRLG--------LLEH--SVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE 234 (797)
Q Consensus 167 ~elg--------L~d~--~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~D 234 (797)
.... + .+ +|.|+. ..+--..++.+|||-...|..-.+..|..-+-+|.-|.+.|++--|...|+.++
T Consensus 590 ~~va~~iN~Dp~v-~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~ 668 (794)
T TIGR02093 590 NSVAEVVNNDPAV-GDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREE 668 (794)
T ss_pred HHHHHHhccChhh-CCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHH
Confidence 4332 1 11 477777 345677899999999987654434777777999999999999999999999887
Q ss_pred --CCeEEEEcCCCHHHHHH
Q 003758 235 --GAQVIFFQKDNPEGLSR 251 (797)
Q Consensus 235 --g~nG~Lfd~~D~eeLAe 251 (797)
++|+++|- .+.+++.+
T Consensus 669 vG~eN~fiFG-~~~~ev~~ 686 (794)
T TIGR02093 669 VGAENIFIFG-LTVEEVEA 686 (794)
T ss_pred hCcccEEEcC-CCHHHHHH
Confidence 78999995 34444443
No 137
>PLN02448 UDP-glycosyltransferase family protein
Probab=94.73 E-value=0.84 Score=52.95 Aligned_cols=81 Identities=12% Similarity=0.014 Sum_probs=54.7
Q ss_pred eEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhhcC-CeEEEEc-------
Q 003758 175 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAEG-AQVIFFQ------- 242 (797)
Q Consensus 175 ~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~Dg-~nG~Lfd------- 242 (797)
++.+.+.. .-..+|+..++..+-++ +.-++++||+++|+|+|+-... .....+.+. +.|+-+.
T Consensus 324 ~~~v~~w~-pQ~~iL~h~~v~~fvtH----gG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~ 398 (459)
T PLN02448 324 MGLVVPWC-DQLKVLCHSSVGGFWTH----CGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEET 398 (459)
T ss_pred CEEEeccC-CHHHHhccCccceEEec----CchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCC
Confidence 46666632 23456777777444333 4457899999999999986654 455556552 4466553
Q ss_pred CCCHHHHHHHHHHHHhCc
Q 003758 243 KDNPEGLSRAFSLFISNG 260 (797)
Q Consensus 243 ~~D~eeLAeaI~~LLedp 260 (797)
.-+.+++++++.+++.++
T Consensus 399 ~~~~~~l~~av~~vl~~~ 416 (459)
T PLN02448 399 LVGREEIAELVKRFMDLE 416 (459)
T ss_pred cCcHHHHHHHHHHHhcCC
Confidence 236899999999999875
No 138
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.71 E-value=0.08 Score=59.38 Aligned_cols=117 Identities=12% Similarity=0.196 Sum_probs=91.3
Q ss_pred eEEEec---ChhhHHHHHHHcCEEEEcc--CCCCCCc--cHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcCCCHH
Q 003758 175 SVRHYG---FNGDVNGVLLMADIVLYGS--SQVEQGF--PSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPE 247 (797)
Q Consensus 175 ~V~flG---~~edl~~~L~aADV~V~PS--~~Ee~GF--PlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~e 247 (797)
++..+| ....+...++..++.+.-+ ..++.++ .+-+.|+|+||.|.|+....++..++.+|+.-+++ .|..
T Consensus 238 ~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~~~e~~f~pgk~~iv~--~d~k 315 (373)
T COG4641 238 NVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWKDLEKFFKPGKDIIVY--QDSK 315 (373)
T ss_pred hhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccccHHHHHHhcCCchheEEe--cCHH
Confidence 455555 3467888899999887632 2222233 88999999999999999999999999998754444 7999
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHHHHH
Q 003758 248 GLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC-VTRYARILENV 296 (797)
Q Consensus 248 eLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~-i~~Y~kLLe~l 296 (797)
++.+.+..++..++. ++++++.+.+.+...+..+. +..+......+
T Consensus 316 dl~~~~~yll~h~~e---rkeiae~~ye~V~~~ht~~~r~~~~~~~i~sI 362 (373)
T COG4641 316 DLKEKLKYLLNHPDE---RKEIAECAYERVLARHTYEERIFKLLNEIASI 362 (373)
T ss_pred HHHHHHHHHhcCcch---HHHHHHhhHHHHHHhccHHHHHHHHHHHHHHH
Confidence 999999999999987 89999999999888876655 55666665553
No 139
>PLN03004 UDP-glycosyltransferase
Probab=94.68 E-value=0.48 Score=55.00 Aligned_cols=83 Identities=11% Similarity=0.049 Sum_probs=57.8
Q ss_pred eEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhh-cCCeEEEEcC-----C
Q 003758 175 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVA-EGAQVIFFQK-----D 244 (797)
Q Consensus 175 ~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~-Dg~nG~Lfd~-----~ 244 (797)
++.+.+... -.++|+.+++..+-|+ +.-++++||+++|+|+|+-... .....+. .-+.|+.++. -
T Consensus 335 g~~v~~W~P-Q~~iL~H~~v~~FvTH----~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~ 409 (451)
T PLN03004 335 GMVVKSWAP-QVPVLNHKAVGGFVTH----CGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFV 409 (451)
T ss_pred cEEEEeeCC-HHHHhCCCccceEecc----CcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCcc
Confidence 466666221 1337889998555554 3357889999999999986544 4555554 3356877752 3
Q ss_pred CHHHHHHHHHHHHhCccc
Q 003758 245 NPEGLSRAFSLFISNGKL 262 (797)
Q Consensus 245 D~eeLAeaI~~LLedpel 262 (797)
+.+++++++.+++.++..
T Consensus 410 ~~e~l~~av~~vm~~~~~ 427 (451)
T PLN03004 410 SSTEVEKRVQEIIGECPV 427 (451)
T ss_pred CHHHHHHHHHHHhcCHHH
Confidence 789999999999987665
No 140
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.67 E-value=0.35 Score=59.41 Aligned_cols=146 Identities=14% Similarity=0.079 Sum_probs=96.1
Q ss_pred HHHHcC--CCCCCEEEEEEccccccccccccHHH-HHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCC--HHHHHHHH
Q 003758 92 LRKENG--FLKDEIVVVVVGSSFFYNELSWDYAV-AMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGY--NDALQEVA 166 (797)
Q Consensus 92 lR~klG--L~~d~~vIL~VGrl~~~KGl~Kn~~l-LLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y--~e~Leela 166 (797)
+++..| ++++...++++-|+..||.. .+ ++..+..+..-...-.....+.. +|++|+....| -..+.+++
T Consensus 518 i~~~~g~~ldp~slfdvq~KR~heYKRq----~LNil~ii~~y~~i~~~p~~~~~P~~-~IFaGKAaP~y~~aK~iIklI 592 (797)
T cd04300 518 IKKTTGVEVDPDSLFDVQVKRIHEYKRQ----LLNVLHIIHLYNRIKENPNADIVPRT-FIFGGKAAPGYYMAKLIIKLI 592 (797)
T ss_pred HHHHhCCccCCCccEEEEeeechhhhhh----hhHHHhhHHHHHHHHhCCCcCCCCeE-EEEeccCCCCcHHHHHHHHHH
Confidence 344455 57788888999999999644 44 55555444321110000113466 48889866666 22333333
Q ss_pred HHcCC-------CCC--eEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhc-
Q 003758 167 SRLGL-------LEH--SVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE- 234 (797)
Q Consensus 167 ~elgL-------~d~--~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~D- 234 (797)
....- -.+ +|.|+. ..+--..++.+|||-...|..-.+..|..-+-+|.-|.+.|++--|...|+.++
T Consensus 593 ~~va~~in~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~v 672 (797)
T cd04300 593 NAVADVVNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEV 672 (797)
T ss_pred HHHHHHhccChhcCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHh
Confidence 32221 111 477777 345677899999999987654434777777999999999999999999998887
Q ss_pred -CCeEEEEc
Q 003758 235 -GAQVIFFQ 242 (797)
Q Consensus 235 -g~nG~Lfd 242 (797)
++|+++|-
T Consensus 673 G~eN~fiFG 681 (797)
T cd04300 673 GEENIFIFG 681 (797)
T ss_pred CcCcEEEeC
Confidence 78999995
No 141
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=94.54 E-value=0.61 Score=54.14 Aligned_cols=82 Identities=13% Similarity=0.072 Sum_probs=54.4
Q ss_pred eEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhhcC-CeEEEE-cCCCHHH
Q 003758 175 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAEG-AQVIFF-QKDNPEG 248 (797)
Q Consensus 175 ~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~Dg-~nG~Lf-d~~D~ee 248 (797)
+..+.+.. .-..+|+..++..+-|+ +.-++++||+++|+|+|+-... .....+.+. +.|+.+ ..-+.++
T Consensus 325 ~g~v~~w~-PQ~~iL~h~~v~~fvtH----~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~ 399 (451)
T PLN02410 325 RGYIVKWA-PQKEVLSHPAVGGFWSH----CGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRGA 399 (451)
T ss_pred CeEEEccC-CHHHHhCCCccCeeeec----CchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHHH
Confidence 45566622 12336777666444333 3346889999999999986544 455555543 567666 3346889
Q ss_pred HHHHHHHHHhCcc
Q 003758 249 LSRAFSLFISNGK 261 (797)
Q Consensus 249 LAeaI~~LLedpe 261 (797)
+++++.+++.+++
T Consensus 400 v~~av~~lm~~~~ 412 (451)
T PLN02410 400 VERAVKRLMVEEE 412 (451)
T ss_pred HHHHHHHHHcCCc
Confidence 9999999998764
No 142
>PLN02670 transferase, transferring glycosyl groups
Probab=94.44 E-value=0.2 Score=58.47 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=72.3
Q ss_pred EEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhhcCCeEEEEcC------CC
Q 003758 176 VRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAEGAQVIFFQK------DN 245 (797)
Q Consensus 176 V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~Dg~nG~Lfd~------~D 245 (797)
+.+.+... -.++|+...+..+-|+ +.-++++||+++|+|+|+-... .....+...+.|+.++. -+
T Consensus 341 ~vv~~W~P-Q~~IL~H~~v~~FvtH----cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~ 415 (472)
T PLN02670 341 MIHVGWVP-QVKILSHESVGGFLTH----CGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFT 415 (472)
T ss_pred eEEeCcCC-HHHHhcCcccceeeec----CCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCc
Confidence 45555221 2346777777555444 3457889999999999987654 45556666677887753 25
Q ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhc
Q 003758 246 PEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYARILENVLN 298 (797)
Q Consensus 246 ~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~kLLe~lL~ 298 (797)
.+++.+++.+++.+++ ..++.+++++..+.........++.+.+.+.+.
T Consensus 416 ~e~i~~av~~vm~~~~----g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~ 464 (472)
T PLN02670 416 SDSVAESVRLAMVDDA----GEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLR 464 (472)
T ss_pred HHHHHHHHHHHhcCcc----hHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHH
Confidence 8899999999998764 344555555555555444444445544444443
No 143
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=94.37 E-value=1.4 Score=51.63 Aligned_cols=97 Identities=12% Similarity=0.110 Sum_probs=57.5
Q ss_pred eEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhh-cCCeEEEEcC-----C
Q 003758 175 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVA-EGAQVIFFQK-----D 244 (797)
Q Consensus 175 ~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~-Dg~nG~Lfd~-----~ 244 (797)
.+.+.+... -..+|+...+.++-++ +.-++++||+++|+|+|+-... .....+. .-+.|.-+.. -
T Consensus 344 g~~v~~w~P-Q~~vL~h~~v~~fvtH----~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~ 418 (477)
T PLN02863 344 GLVIRGWAP-QVAILSHRAVGAFLTH----CGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVP 418 (477)
T ss_pred CEEecCCCC-HHHHhcCCCcCeEEec----CCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCc
Confidence 466666332 2457776444444333 4456889999999999986544 4555544 4356776621 2
Q ss_pred CHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHH
Q 003758 245 NPEGLSRAFSLFIS-NGKLSKFARTVASAGRLH 276 (797)
Q Consensus 245 D~eeLAeaI~~LLe-dpel~~~r~~m~~~aRk~ 276 (797)
+.+++.+++..++. +++.+..++++++.+++.
T Consensus 419 ~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~A 451 (477)
T PLN02863 419 DSDELARVFMESVSENQVERERAKELRRAALDA 451 (477)
T ss_pred CHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 57899999999883 444333333334433333
No 144
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=94.35 E-value=0.28 Score=60.08 Aligned_cols=145 Identities=10% Similarity=0.026 Sum_probs=95.5
Q ss_pred HHHcC--CCCCCEEEEEEccccccccccccHHH-HHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCC--HHHHHHHHH
Q 003758 93 RKENG--FLKDEIVVVVVGSSFFYNELSWDYAV-AMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGY--NDALQEVAS 167 (797)
Q Consensus 93 R~klG--L~~d~~vIL~VGrl~~~KGl~Kn~~l-LLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y--~e~Leela~ 167 (797)
+++.| ++++...++++-|+..||.. .+ ++..+..+..-...-.....+.. +|++|+....| -..+.+++.
T Consensus 518 ~~~~g~~ldp~slfdvq~kR~heYKRq----~Lnil~ii~~y~~i~~~p~~~~~P~~-~IFaGKAaP~y~~aK~iIklI~ 592 (798)
T PRK14985 518 KQRTGIEINPQAIFDVQIKRLHEYKRQ----HLNLLHILALYKEIRENPQADRVPRV-FLFGAKAAPGYYLAKNIIFAIN 592 (798)
T ss_pred HHHhCCccCchhcchhhHhhhhhhhhh----hhHhhhhHHHHHHHHhCCCcCCCCeE-EEEeecCCCCcHHHHHHHHHHH
Confidence 34445 56777788888888999644 44 55555544321111000113466 48899876666 223334443
Q ss_pred HcC----CC---CC--eEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhc--
Q 003758 168 RLG----LL---EH--SVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE-- 234 (797)
Q Consensus 168 elg----L~---d~--~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~D-- 234 (797)
... -. .+ +|.|+. ..+--..++.+|||-...|..-.+..|..-+-+|.-|.+.|++--|...|+.++
T Consensus 593 ~va~~in~Dp~v~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG 672 (798)
T PRK14985 593 KVAEVINNDPLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVG 672 (798)
T ss_pred HHHHHhcCChhhCCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhC
Confidence 332 00 11 477887 345677899999999987654434777788999999999999999999998876
Q ss_pred CCeEEEEc
Q 003758 235 GAQVIFFQ 242 (797)
Q Consensus 235 g~nG~Lfd 242 (797)
+.||++|-
T Consensus 673 ~eN~f~fG 680 (798)
T PRK14985 673 EENIFIFG 680 (798)
T ss_pred cCcEEEeC
Confidence 77999995
No 145
>PLN02210 UDP-glucosyl transferase
Probab=94.35 E-value=1.1 Score=51.97 Aligned_cols=81 Identities=10% Similarity=0.021 Sum_probs=54.8
Q ss_pred EEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhhc-CCeEEEEcC------C
Q 003758 176 VRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAE-GAQVIFFQK------D 244 (797)
Q Consensus 176 V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~D-g~nG~Lfd~------~ 244 (797)
..+.+... -..+|+.+++..+-++ +.=++++||+++|+|+|+-... .....+.+ -+.|+.+.. -
T Consensus 326 g~v~~w~P-Q~~iL~h~~vg~FitH----~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~ 400 (456)
T PLN02210 326 GVVLEWSP-QEKILSHMAISCFVTH----CGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGEL 400 (456)
T ss_pred eEEEecCC-HHHHhcCcCcCeEEee----CCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcC
Confidence 34456221 2357888885555443 2235789999999999986554 45556655 466877642 3
Q ss_pred CHHHHHHHHHHHHhCcc
Q 003758 245 NPEGLSRAFSLFISNGK 261 (797)
Q Consensus 245 D~eeLAeaI~~LLedpe 261 (797)
+.+++++++.+++.+++
T Consensus 401 ~~~~l~~av~~~m~~~~ 417 (456)
T PLN02210 401 KVEEVERCIEAVTEGPA 417 (456)
T ss_pred CHHHHHHHHHHHhcCch
Confidence 68899999999998764
No 146
>PLN02167 UDP-glycosyltransferase family protein
Probab=94.32 E-value=1.4 Score=51.49 Aligned_cols=100 Identities=15% Similarity=0.101 Sum_probs=59.1
Q ss_pred eEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhH-hhhcCCeEEEEcC------
Q 003758 175 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKE-YVAEGAQVIFFQK------ 243 (797)
Q Consensus 175 ~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~E-iI~Dg~nG~Lfd~------ 243 (797)
+..+.+.. .-..+|+...+-.+-++ +.-++++||+++|+|+|+-... .... ++..-+.|+.+..
T Consensus 341 rg~v~~w~-PQ~~iL~h~~vg~fvtH----~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~ 415 (475)
T PLN02167 341 RGLVCGWA-PQVEILAHKAIGGFVSH----CGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAY 415 (475)
T ss_pred CeeeeccC-CHHHHhcCcccCeEEee----CCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeeccccccc
Confidence 34455532 23446766554333232 3345789999999999986544 3443 3555556776632
Q ss_pred ---CCHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHHHH
Q 003758 244 ---DNPEGLSRAFSLFISNG-KLSKFARTVASAGRLHAKN 279 (797)
Q Consensus 244 ---~D~eeLAeaI~~LLedp-el~~~r~~m~~~aRk~ak~ 279 (797)
-+.+++++++.+++.++ +.+...+++++.+++.+.+
T Consensus 416 ~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~ 455 (475)
T PLN02167 416 GEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMD 455 (475)
T ss_pred CCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC
Confidence 26889999999999765 3333344444444444433
No 147
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=94.00 E-value=1.7 Score=53.04 Aligned_cols=152 Identities=11% Similarity=0.060 Sum_probs=86.8
Q ss_pred HHHcC--CCCCCEEEEEEccccccccccccHHH-HHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCH--HHHHHHHH
Q 003758 93 RKENG--FLKDEIVVVVVGSSFFYNELSWDYAV-AMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYN--DALQEVAS 167 (797)
Q Consensus 93 R~klG--L~~d~~vIL~VGrl~~~KGl~Kn~~l-LLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~--e~Leela~ 167 (797)
++..| ++++...++++-|+..||.. .+ +++.+..+..-.........++. ++++|+.-..|. ..+.+++.
T Consensus 433 ~~~~~~~ldp~slfdv~~rR~heYKRq----~LniL~ii~~y~rik~~p~~~~~Pv~-~IFaGKAhP~d~~gK~iIk~I~ 507 (713)
T PF00343_consen 433 KKRTGVELDPDSLFDVQARRFHEYKRQ----LLNILHIIDRYNRIKNNPNKKIRPVQ-FIFAGKAHPGDYMGKEIIKLIN 507 (713)
T ss_dssp HHHHSS---TTSEEEEEES-SCCCCTH----HHHHHHHHHHHHHHHHSTTSCCS-EE-EEEE----TT-HHHHHHHHHHH
T ss_pred HHHhCCCCCcchhhhhhhhhccccccc----CcccccHHHHHHHHHhcccCCCCCeE-EEEeccCCCCcHHHHHHHHHHH
Confidence 34444 57788888999999999644 33 44444433221111112234567 488998655552 23333333
Q ss_pred Hc--------CCCC-CeEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhc--
Q 003758 168 RL--------GLLE-HSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAE-- 234 (797)
Q Consensus 168 el--------gL~d-~~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~D-- 234 (797)
+. .+.+ .+|.|+. ..+-...++.++||-+..|..--+..|.+-+-||.-|.+.+++--|...|+.+.
T Consensus 508 ~va~~in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG 587 (713)
T PF00343_consen 508 NVAEVINNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVG 587 (713)
T ss_dssp HHHHHHCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-
T ss_pred HHHHHHhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcC
Confidence 22 1221 1578887 345677889999999987755545889999999999999999999998888753
Q ss_pred CCeEEEEcCCCHHHHH
Q 003758 235 GAQVIFFQKDNPEGLS 250 (797)
Q Consensus 235 g~nG~Lfd~~D~eeLA 250 (797)
..|.++|- .+.+++.
T Consensus 588 ~eN~fiFG-~~~~ev~ 602 (713)
T PF00343_consen 588 EENIFIFG-LTAEEVE 602 (713)
T ss_dssp GGGSEEES--BHHHHH
T ss_pred CCcEEEcC-CCHHHHH
Confidence 45788884 3444433
No 148
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=93.97 E-value=2.3 Score=47.86 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=40.2
Q ss_pred cEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEc
Q 003758 145 FKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 223 (797)
Q Consensus 145 vkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIas 223 (797)
..| ++.|.... +.+++...+. . .+.+.+ +..++|+.||++|..| |.+.+|++.+|+|.|..
T Consensus 200 ~~~-~i~~a~~~---~~i~~~~~~~--~--~~~~~~---~~~~~m~~aDlal~~S-------GT~TLE~al~g~P~Vv~ 260 (347)
T PRK14089 200 KIL-VVPSFFKG---KDLKEIYGDI--S--EFEISY---DTHKALLEAEFAFICS-------GTATLEAALIGTPFVLA 260 (347)
T ss_pred cEE-EEeCCCcH---HHHHHHHhcC--C--CcEEec---cHHHHHHhhhHHHhcC-------cHHHHHHHHhCCCEEEE
Confidence 453 55554331 5555544432 1 345554 5578999999999965 56777999999997754
No 149
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=93.33 E-value=2.4 Score=47.69 Aligned_cols=106 Identities=14% Similarity=0.231 Sum_probs=71.9
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcC-C
Q 003758 147 FVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPD-F 225 (797)
Q Consensus 147 fLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd-~ 225 (797)
.+++.|.--.. +..+++.....-. ++|.+.-+..++..++..|+.+|.-+-+ +++.|-+++|||.+.-. .
T Consensus 253 ~~ivtGP~MP~--~~r~~l~~~A~~~-p~i~I~~f~~~~~~ll~gA~~vVSm~GY------NTvCeILs~~k~aLivPr~ 323 (400)
T COG4671 253 WLIVTGPFMPE--AQRQKLLASAPKR-PHISIFEFRNDFESLLAGARLVVSMGGY------NTVCEILSFGKPALIVPRA 323 (400)
T ss_pred eEEEeCCCCCH--HHHHHHHHhcccC-CCeEEEEhhhhHHHHHHhhheeeecccc------hhhhHHHhCCCceEEeccC
Confidence 35777865443 4555555544433 3899999999999999999999986655 68899999999966544 3
Q ss_pred CChhHhhhc-------CCeEEEEc-CCCHHHHHHHHHHHHhCcc
Q 003758 226 PIIKEYVAE-------GAQVIFFQ-KDNPEGLSRAFSLFISNGK 261 (797)
Q Consensus 226 gGi~EiI~D-------g~nG~Lfd-~~D~eeLAeaI~~LLedpe 261 (797)
.+-.|...- |-..++.+ .-+++.|+++|..++.-|.
T Consensus 324 ~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~P~ 367 (400)
T COG4671 324 APREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALARPS 367 (400)
T ss_pred CCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccCCC
Confidence 343344332 21233332 2348999999999998553
No 150
>PLN02173 UDP-glucosyl transferase family protein
Probab=93.27 E-value=2.6 Score=48.97 Aligned_cols=82 Identities=10% Similarity=0.068 Sum_probs=57.4
Q ss_pred eEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhhcC-CeEEEEcC------
Q 003758 175 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAEG-AQVIFFQK------ 243 (797)
Q Consensus 175 ~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~Dg-~nG~Lfd~------ 243 (797)
++.+.+... -..+|+..++.++-|+ +..++++||+++|+|+|+-..- ....++.+. +.|+-+..
T Consensus 318 ~~~i~~W~P-Q~~iL~H~~v~~FvtH----cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~ 392 (449)
T PLN02173 318 KSLVLKWSP-QLQVLSNKAIGCFMTH----CGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGI 392 (449)
T ss_pred ceEEeCCCC-HHHHhCCCccceEEec----CccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCc
Confidence 577777332 2447888886666554 4467899999999999986544 455566553 45665532
Q ss_pred CCHHHHHHHHHHHHhCcc
Q 003758 244 DNPEGLSRAFSLFISNGK 261 (797)
Q Consensus 244 ~D~eeLAeaI~~LLedpe 261 (797)
-+.+++++++.+++.+++
T Consensus 393 ~~~e~v~~av~~vm~~~~ 410 (449)
T PLN02173 393 AKREEIEFSIKEVMEGEK 410 (449)
T ss_pred ccHHHHHHHHHHHhcCCh
Confidence 167999999999998754
No 151
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.16 E-value=0.99 Score=49.31 Aligned_cols=104 Identities=14% Similarity=0.105 Sum_probs=67.6
Q ss_pred cEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCc--EEE
Q 003758 145 FKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIP--VIT 222 (797)
Q Consensus 145 vkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~P--VIa 222 (797)
+.+-+++|.+... ...+.+.++ ..+ ++.++-..+++..+|..||+.|. +-|.++.||...|+| ||+
T Consensus 186 ~nl~iV~gs~~p~-l~~l~k~~~---~~~-~i~~~~~~~dma~LMke~d~aI~-------AaGstlyEa~~lgvP~l~l~ 253 (318)
T COG3980 186 VNLHIVVGSSNPT-LKNLRKRAE---KYP-NINLYIDTNDMAELMKEADLAIS-------AAGSTLYEALLLGVPSLVLP 253 (318)
T ss_pred eeEEEEecCCCcc-hhHHHHHHh---hCC-CeeeEecchhHHHHHHhcchhee-------ccchHHHHHHHhcCCceEEe
Confidence 3333677754432 244444444 334 68888888899999999999998 558999999999999 332
Q ss_pred --cCCCChhHhhhcCCeEEEEcC---CCHHHHHHHHHHHHhCccc
Q 003758 223 --PDFPIIKEYVAEGAQVIFFQK---DNPEGLSRAFSLFISNGKL 262 (797)
Q Consensus 223 --sd~gGi~EiI~Dg~nG~Lfd~---~D~eeLAeaI~~LLedpel 262 (797)
.+-......+..- |+.... -...+....+.++..|+..
T Consensus 254 ~a~NQ~~~a~~f~~l--g~~~~l~~~l~~~~~~~~~~~i~~d~~~ 296 (318)
T COG3980 254 LAENQIATAKEFEAL--GIIKQLGYHLKDLAKDYEILQIQKDYAR 296 (318)
T ss_pred eeccHHHHHHHHHhc--CchhhccCCCchHHHHHHHHHhhhCHHH
Confidence 3333333334332 332222 3466777788888888876
No 152
>PLN02554 UDP-glycosyltransferase family protein
Probab=93.09 E-value=1.5 Score=51.31 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=58.5
Q ss_pred eEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----Chh-HhhhcCCeEEEEc-------
Q 003758 175 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIK-EYVAEGAQVIFFQ------- 242 (797)
Q Consensus 175 ~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~-EiI~Dg~nG~Lfd------- 242 (797)
++.+.+.. .-..+|+...+..+-++ +.-++++||+.+|+|+|+-... ... .++..-+.|..++
T Consensus 343 ~g~v~~W~-PQ~~iL~H~~v~~FvtH----~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~ 417 (481)
T PLN02554 343 IGKVIGWA-PQVAVLAKPAIGGFVTH----CGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDL 417 (481)
T ss_pred CceEEeeC-CHHHHhCCcccCccccc----CccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccc
Confidence 45555622 13446744444333332 3356889999999999986654 344 4455555576653
Q ss_pred ------CCCHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHH
Q 003758 243 ------KDNPEGLSRAFSLFIS-NGKLSKFARTVASAGRLH 276 (797)
Q Consensus 243 ------~~D~eeLAeaI~~LLe-dpel~~~r~~m~~~aRk~ 276 (797)
.-+.+++.++|.+++. +++.+...+++++.+++.
T Consensus 418 ~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~a 458 (481)
T PLN02554 418 LAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVA 458 (481)
T ss_pred cccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 1268899999999996 554433344444444444
No 153
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=92.74 E-value=0.099 Score=49.76 Aligned_cols=70 Identities=13% Similarity=0.124 Sum_probs=34.8
Q ss_pred CCCEEEEEccchhhhhhhhhhhhhHHHHHH-HHHHHHhccCEEEecCCchHHH--hhCCCCCCEEEeCCCCCCc
Q 003758 7 SIPLVWIIQEDSLANRLPVYVERGFQNLLS-YWKSVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPGSPADV 77 (797)
Q Consensus 7 ~IPVIW~IHE~sL~~rL~~y~~~g~eklls-~~~~~~~~AD~VV~ps~~l~~i--~~gld~~ki~VIPnsGVDv 77 (797)
.+|+|+++|..................+.. .....++.+|.+++++...+.. ..|++++++.|||| |||.
T Consensus 101 ~~~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~~~l~~~~~~~~ki~vI~n-gid~ 173 (177)
T PF13439_consen 101 KVPIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADRIIAVSESTKDELIKFGIPPEKIHVIYN-GIDT 173 (177)
T ss_dssp CSCEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHHHHHHHHT--SS-EEE-----B-C
T ss_pred CCCEEEEeCCCcccccccccccchhhhhhhhhhhhHHhcCCEEEEECHHHHHHHHHhCCcccCCEEEEC-CccH
Confidence 689999999866321111011101111111 1333578999999988665444 34788899999999 9998
No 154
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.67 E-value=2.2 Score=47.25 Aligned_cols=187 Identities=16% Similarity=0.160 Sum_probs=107.6
Q ss_pred HHhccCEEEecCCch--HHHhhCCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEEEE-Ecc-cccccc
Q 003758 41 VFSRVNVIVFPDYTL--PMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVV-VGS-SFFYNE 116 (797)
Q Consensus 41 ~~~~AD~VV~ps~~l--~~i~~gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vIL~-VGr-l~~~KG 116 (797)
.+.-|++|+.|.... .....|-+++++...++. ..+=....|.+ .+.+-+++|+..+...|++ --+ ...+..
T Consensus 123 ~~Pla~~ii~P~~~~~~~~~~~G~~p~~i~~~~gi-ae~~~v~~f~p---d~evlkeLgl~~~~~yIVmRpe~~~A~y~~ 198 (346)
T COG1817 123 TLPLADVIITPEAIDEEELLDFGADPNKISGYNGI-AELANVYGFVP---DPEVLKELGLEEGETYIVMRPEPWGAHYDN 198 (346)
T ss_pred chhhhhheecccccchHHHHHhCCCccceecccce-eEEeecccCCC---CHHHHHHcCCCCCCceEEEeeccccceeec
Confidence 456677888886443 334667777777655532 11100011322 3456678999886544433 211 111222
Q ss_pred ccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEE
Q 003758 117 LSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVL 196 (797)
Q Consensus 117 l~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V 196 (797)
...+...+.+++..| . + .. ++++... ...++..+ ++.+ ++..-..-|-.+++-.|++++
T Consensus 199 g~~~~~~~~~li~~l----~---k-~g----iV~ipr~-----~~~~eife--~~~n--~i~pk~~vD~l~Llyya~lvi 257 (346)
T COG1817 199 GDRGISVLPDLIKEL----K---K-YG----IVLIPRE-----KEQAEIFE--GYRN--IIIPKKAVDTLSLLYYATLVI 257 (346)
T ss_pred cccchhhHHHHHHHH----H---h-Cc----EEEecCc-----hhHHHHHh--hhcc--ccCCcccccHHHHHhhhheee
Confidence 223444555555544 1 1 11 2444422 22333333 4432 222224445556777888888
Q ss_pred EccCCCCCCccHHHHHHHHhCCcEEEcCCC---ChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 003758 197 YGSSQVEQGFPSLIVRAMTFGIPVITPDFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 261 (797)
Q Consensus 197 ~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g---Gi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpe 261 (797)
- +.|.---||+..|+|.|...-| ++.++..+. |.++...|+.+..+...+++.++.
T Consensus 258 g-------~ggTMarEaAlLGtpaIs~~pGkll~vdk~lie~--G~~~~s~~~~~~~~~a~~~l~~~~ 316 (346)
T COG1817 258 G-------AGGTMAREAALLGTPAISCYPGKLLAVDKYLIEK--GLLYHSTDEIAIVEYAVRNLKYRR 316 (346)
T ss_pred c-------CCchHHHHHHHhCCceEEecCCccccccHHHHhc--CceeecCCHHHHHHHHHHHhhchh
Confidence 7 4466779999999999998855 466666655 889998998888888888877665
No 155
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=91.85 E-value=3.6 Score=47.96 Aligned_cols=82 Identities=10% Similarity=0.019 Sum_probs=54.1
Q ss_pred eEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhhcC-CeEEEEc-----CC
Q 003758 175 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAEG-AQVIFFQ-----KD 244 (797)
Q Consensus 175 ~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~Dg-~nG~Lfd-----~~ 244 (797)
+..+.+... -.++|+..++.++-++ +.-++++||+.+|+|+|+-... .....+.+. +.|+-+. .-
T Consensus 328 ~g~v~~W~P-Q~~iL~h~~vg~fvtH----~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~ 402 (455)
T PLN02152 328 VGMIVSWCS-QIEVLRHRAVGCFVTH----CGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLV 402 (455)
T ss_pred CeEEEeeCC-HHHHhCCcccceEEee----CCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcC
Confidence 555666322 2347888887666554 3456889999999999986544 344555441 2355442 23
Q ss_pred CHHHHHHHHHHHHhCcc
Q 003758 245 NPEGLSRAFSLFISNGK 261 (797)
Q Consensus 245 D~eeLAeaI~~LLedpe 261 (797)
+.+++++++.+++.++.
T Consensus 403 ~~e~l~~av~~vm~~~~ 419 (455)
T PLN02152 403 ERGEIRRCLEAVMEEKS 419 (455)
T ss_pred cHHHHHHHHHHHHhhhH
Confidence 68899999999997553
No 156
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=91.74 E-value=8.8 Score=41.87 Aligned_cols=164 Identities=16% Similarity=0.186 Sum_probs=82.8
Q ss_pred HhccCEEEecCCchHHHhhCCCCCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEEEEEccccccccccccH
Q 003758 42 FSRVNVIVFPDYTLPMLYSVLDAGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVVVVVGSSFFYNELSWDY 121 (797)
Q Consensus 42 ~~~AD~VV~ps~~l~~i~~gld~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vIL~VGrl~~~KGl~Kn~ 121 (797)
.+..|.||+|........ .....|+..|-+++-.+ .+.+... ..+.. +.++-...+++-++||.-. +....+.
T Consensus 107 ~~~fDlvivp~HD~~~~~-s~~~~Nilpi~Gs~h~V--t~~~lAa-~~e~~-~~~~p~~rq~vAVlVGg~n--k~f~~~~ 179 (329)
T COG3660 107 YNHFDLVIVPYHDWREEL-SDQGPNILPINGSPHNV--TSQRLAA-LREAF-KHLLPLPRQRVAVLVGGNN--KAFVFQE 179 (329)
T ss_pred cccceEEeccchhhhhhh-hccCCceeeccCCCCcc--cHHHhhh-hHHHH-HhhCCCCCceEEEEecCCC--CCCccCH
Confidence 344667777644332221 12345666665432222 1222111 12333 3344445667778887532 2223333
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHH-cCCCCCeEEEecC---hhhHHHHHHHcCEEEE
Q 003758 122 AVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASR-LGLLEHSVRHYGF---NGDVNGVLLMADIVLY 197 (797)
Q Consensus 122 ~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~e-lgL~d~~V~flG~---~edl~~~L~aADV~V~ 197 (797)
+.+.+....|...+. + ....|++-...-+. +.++..++. +.-.. -+.+-+. ..-..++|++||.+|.
T Consensus 180 d~a~q~~~~l~k~l~---~--~g~~~lisfSRRTp---~~~~s~l~~~l~s~~-~i~w~~~d~g~NPY~~~La~Adyii~ 250 (329)
T COG3660 180 DKAHQFASLLVKILE---N--QGGSFLISFSRRTP---DTVKSILKNNLNSSP-GIVWNNEDTGYNPYIDMLAAADYIIS 250 (329)
T ss_pred HHHHHHHHHHHHHHH---h--CCceEEEEeecCCc---HHHHHHHHhccccCc-eeEeCCCCCCCCchHHHHhhcceEEE
Confidence 444444333332221 1 23454333333332 666666554 44333 3333332 1238899999999999
Q ss_pred ccCCCCCCccHHHHHHHHhCCcEEEcCCC
Q 003758 198 GSSQVEQGFPSLIVRAMTFGIPVITPDFP 226 (797)
Q Consensus 198 PS~~Ee~GFPlvLLEAMA~G~PVIasd~g 226 (797)
+...- .-+.||.+.|+||-+--.+
T Consensus 251 TaDSi-----nM~sEAasTgkPv~~~~~~ 274 (329)
T COG3660 251 TADSI-----NMCSEAASTGKPVFILEPP 274 (329)
T ss_pred ecchh-----hhhHHHhccCCCeEEEecC
Confidence 76443 4578999999999875444
No 157
>PLN02555 limonoid glucosyltransferase
Probab=89.96 E-value=8.7 Score=45.15 Aligned_cols=82 Identities=11% Similarity=0.022 Sum_probs=52.0
Q ss_pred eEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhhcC-CeEEEEc-----C-
Q 003758 175 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAEG-AQVIFFQ-----K- 243 (797)
Q Consensus 175 ~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~Dg-~nG~Lfd-----~- 243 (797)
++.+.+... -..+|+.-.+..+-++ +.-++++||+++|+|+|+-..- ....++.+. +.|+-+. .
T Consensus 338 ~g~v~~W~P-Q~~iL~H~~v~~FvtH----~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~ 412 (480)
T PLN02555 338 KGKIVQWCP-QEKVLAHPSVACFVTH----CGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENK 412 (480)
T ss_pred ceEEEecCC-HHHHhCCCccCeEEec----CCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccC
Confidence 566666322 2346644334333332 3356889999999999987654 355555543 5676662 1
Q ss_pred -CCHHHHHHHHHHHHhCcc
Q 003758 244 -DNPEGLSRAFSLFISNGK 261 (797)
Q Consensus 244 -~D~eeLAeaI~~LLedpe 261 (797)
-+.+++.+++.+++.+++
T Consensus 413 ~v~~~~v~~~v~~vm~~~~ 431 (480)
T PLN02555 413 LITREEVAECLLEATVGEK 431 (480)
T ss_pred cCcHHHHHHHHHHHhcCch
Confidence 257899999999997654
No 158
>PLN02764 glycosyltransferase family protein
Probab=89.76 E-value=2.8 Score=48.81 Aligned_cols=70 Identities=9% Similarity=-0.016 Sum_probs=48.7
Q ss_pred HHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhh-cCCeEEEEcC-----CCHHHHHHHHHHH
Q 003758 187 GVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVA-EGAQVIFFQK-----DNPEGLSRAFSLF 256 (797)
Q Consensus 187 ~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~-Dg~nG~Lfd~-----~D~eeLAeaI~~L 256 (797)
++|+...+..+-|+ +.-++++||+++|+|+|+-... .....+. .-+.|+.+.. -+.+++.+++.++
T Consensus 329 ~vL~h~~v~~FvtH----~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~v 404 (453)
T PLN02764 329 LILSHPSVGCFVSH----CGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSV 404 (453)
T ss_pred HHhcCcccCeEEec----CCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHH
Confidence 46766656444333 4457889999999999987655 3555554 3445665422 3789999999999
Q ss_pred HhCc
Q 003758 257 ISNG 260 (797)
Q Consensus 257 Ledp 260 (797)
+.++
T Consensus 405 m~~~ 408 (453)
T PLN02764 405 MKRD 408 (453)
T ss_pred hcCC
Confidence 9875
No 159
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=89.48 E-value=2.1 Score=45.64 Aligned_cols=60 Identities=17% Similarity=0.086 Sum_probs=43.6
Q ss_pred eEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcCCeEEEEcCCCHH
Q 003758 175 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPE 247 (797)
Q Consensus 175 ~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~e 247 (797)
.+.++...-++.+++..||.++.-+ +.+-+||+.+|+|||+...+... ..|++.+....+
T Consensus 183 ~~~~~~~~~~~~~Ll~~s~~Vvtin-------StvGlEAll~gkpVi~~G~~~Y~------~~glt~~~~~~~ 242 (269)
T PF05159_consen 183 NVVIIDDDVNLYELLEQSDAVVTIN-------STVGLEALLHGKPVIVFGRAFYA------GWGLTDDRKLDE 242 (269)
T ss_pred CeEEECCCCCHHHHHHhCCEEEEEC-------CHHHHHHHHcCCceEEecCcccC------CCCccCcCCchh
Confidence 4667776668999999999999833 56779999999999997666332 235555544433
No 160
>PLN02534 UDP-glycosyltransferase
Probab=89.46 E-value=9 Score=45.17 Aligned_cols=79 Identities=10% Similarity=0.036 Sum_probs=50.8
Q ss_pred eEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhh-cCCeEEEEc-------
Q 003758 175 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVA-EGAQVIFFQ------- 242 (797)
Q Consensus 175 ~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~-Dg~nG~Lfd------- 242 (797)
.+.+.|.... ..+|...++..+-++ +..++++||+++|+|+|+-... .....+. .-+.|+-+.
T Consensus 345 g~~v~~w~pq-~~iL~h~~v~~fvtH----~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~ 419 (491)
T PLN02534 345 GLLIKGWAPQ-VLILSHPAIGGFLTH----CGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRW 419 (491)
T ss_pred CeeccCCCCH-HHHhcCCccceEEec----CccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccc
Confidence 4566663222 457888888555443 4467899999999999987654 2333333 323344331
Q ss_pred --------CCCHHHHHHHHHHHHh
Q 003758 243 --------KDNPEGLSRAFSLFIS 258 (797)
Q Consensus 243 --------~~D~eeLAeaI~~LLe 258 (797)
.-+.+++++++.+++.
T Consensus 420 ~~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 420 GDEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred cccccccCccCHHHHHHHHHHHhc
Confidence 1357899999999996
No 161
>PLN02208 glycosyltransferase family protein
Probab=89.41 E-value=2.7 Score=48.78 Aligned_cols=79 Identities=15% Similarity=0.099 Sum_probs=55.4
Q ss_pred eEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhhc-CCeEEEEcC----
Q 003758 175 SVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAE-GAQVIFFQK---- 243 (797)
Q Consensus 175 ~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~D-g~nG~Lfd~---- 243 (797)
++.+.+ ++ .++|+...+.++-|+ +.-++++||+++|+|+|+-..- ....++.+ -+.|+.++.
T Consensus 312 g~~v~~W~PQ---~~iL~H~~v~~FvtH----cG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~ 384 (442)
T PLN02208 312 GVVWGGWVQQ---PLILDHPSIGCFVNH----CGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTG 384 (442)
T ss_pred CcEeeccCCH---HHHhcCCccCeEEcc----CCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCC
Confidence 355555 44 337888887666554 3357889999999999987654 35555444 456777743
Q ss_pred -CCHHHHHHHHHHHHhCc
Q 003758 244 -DNPEGLSRAFSLFISNG 260 (797)
Q Consensus 244 -~D~eeLAeaI~~LLedp 260 (797)
-+.+++.++|.++++++
T Consensus 385 ~~~~~~l~~ai~~~m~~~ 402 (442)
T PLN02208 385 WFSKESLSNAIKSVMDKD 402 (442)
T ss_pred cCcHHHHHHHHHHHhcCC
Confidence 36889999999999876
No 162
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=88.97 E-value=0.59 Score=43.58 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=30.2
Q ss_pred CCCEEEEEccchhhhhhhhhhhhhHHHHH-HHHHHHHhccCEEEecCCchHHH--hhCCCCCCEEEeCC
Q 003758 7 SIPLVWIIQEDSLANRLPVYVERGFQNLL-SYWKSVFSRVNVIVFPDYTLPML--YSVLDAGNFFVIPG 72 (797)
Q Consensus 7 ~IPVIW~IHE~sL~~rL~~y~~~g~ekll-s~~~~~~~~AD~VV~ps~~l~~i--~~gld~~ki~VIPn 72 (797)
++|+|.++|+....... .. ...+. ...+..+..+|.|++++...... ..|++++++.||||
T Consensus 96 ~~p~v~~~h~~~~~~~~-~~----~~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~~~g~~~~ri~vipn 159 (160)
T PF13579_consen 96 GIPLVVTVHGTLFRRGS-RW----KRRLYRWLERRLLRRADRVIVVSEAMRRYLRRYGVPPDRIHVIPN 159 (160)
T ss_dssp T--EEEE-SS-T-------H----HHHHHHHHHHHHHHH-SEEEESSHHHHHHHHHH---GGGEEE---
T ss_pred CCcEEEEECCCchhhcc-ch----hhHHHHHHHHHHHhcCCEEEECCHHHHHHHHHhCCCCCcEEEeCc
Confidence 68999999974432221 11 12222 22456899999999998665444 46788899999998
No 163
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=88.15 E-value=8.4 Score=42.21 Aligned_cols=110 Identities=16% Similarity=0.216 Sum_probs=64.5
Q ss_pred HHHHHcCCCC-CCEEEEEEcccc-ccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHH
Q 003758 91 QLRKENGFLK-DEIVVVVVGSSF-FYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASR 168 (797)
Q Consensus 91 slR~klGL~~-d~~vIL~VGrl~-~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~e 168 (797)
.+...++++. ...+++..|... ..|. +..+...+.+..|. + .+.++ ++.|...+. +..+++.+.
T Consensus 163 ~~~~~~~~~~~~~~i~i~pga~~~~~K~--Wp~e~~~~li~~l~-------~--~~~~i-vl~G~~~e~--~~~~~i~~~ 228 (334)
T TIGR02195 163 AALAKFGLDTERPIIAFCPGAEFGPAKR--WPHEHYAELAKRLI-------D--QGYQV-VLFGSAKDH--PAGNEIEAL 228 (334)
T ss_pred HHHHHcCCCCCCCEEEEcCCCCCCccCC--CCHHHHHHHHHHHH-------H--CCCEE-EEEEChhhH--HHHHHHHHh
Confidence 3445566654 345555666532 4432 33445555554442 1 23564 566655443 444554443
Q ss_pred cCCCCCeEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEc
Q 003758 169 LGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 223 (797)
Q Consensus 169 lgL~d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIas 223 (797)
. ++..+.+.| +-.++..+++.||++|..- + ..+-=|.|.|+|+|+-
T Consensus 229 ~--~~~~~~l~g~~sL~el~ali~~a~l~I~~D-----S--Gp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 229 L--PGELRNLAGETSLDEAVDLIALAKAVVTND-----S--GLMHVAAALNRPLVAL 276 (334)
T ss_pred C--CcccccCCCCCCHHHHHHHHHhCCEEEeeC-----C--HHHHHHHHcCCCEEEE
Confidence 2 221344667 5689999999999999852 3 3447789999999974
No 164
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=87.91 E-value=3.7 Score=43.78 Aligned_cols=104 Identities=22% Similarity=0.258 Sum_probs=62.4
Q ss_pred CCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEec
Q 003758 101 DEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG 180 (797)
Q Consensus 101 d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG 180 (797)
...+++..|+....+. +......+.+..|. ++ ++++ +++|...+. +..+++.+..+..+ .+.+.|
T Consensus 121 ~~~i~i~~~~~~~~k~--w~~~~~~~l~~~l~-------~~--~~~i-vl~g~~~e~--~~~~~i~~~~~~~~-~~~~~~ 185 (279)
T cd03789 121 KPVVVLPPGASGPAKR--WPAERFAALADRLL-------AR--GARV-VLTGGPAER--ELAEEIAAALGGPR-VVNLAG 185 (279)
T ss_pred CCEEEECCCCCCcccc--CCHHHHHHHHHHHH-------HC--CCEE-EEEechhhH--HHHHHHHHhcCCCc-cccCcC
Confidence 3445555555444432 34556666665553 11 5775 556654443 55555555443222 455666
Q ss_pred --ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC
Q 003758 181 --FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP 226 (797)
Q Consensus 181 --~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g 226 (797)
+..++..+++.||++|.+- + ..+--|.++|+|+|+---+
T Consensus 186 ~~~l~e~~~li~~~~l~I~~D-----s--g~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 186 KTSLRELAALLARADLVVTND-----S--GPMHLAAALGTPTVALFGP 226 (279)
T ss_pred CCCHHHHHHHHHhCCEEEeeC-----C--HHHHHHHHcCCCEEEEECC
Confidence 4688999999999999853 2 3446668999999975433
No 165
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=87.13 E-value=2.7 Score=49.80 Aligned_cols=81 Identities=16% Similarity=0.239 Sum_probs=61.0
Q ss_pred eEEEec--ChhhHHHHHHHcCEEEE-ccCCCCCCccHHHHHHHHhCCcEEEcCCCC------------------------
Q 003758 175 SVRHYG--FNGDVNGVLLMADIVLY-GSSQVEQGFPSLIVRAMTFGIPVITPDFPI------------------------ 227 (797)
Q Consensus 175 ~V~flG--~~edl~~~L~aADV~V~-PS~~Ee~GFPlvLLEAMA~G~PVIasd~gG------------------------ 227 (797)
-|.-+| +..++..+|+.+.|+|- ..-+| |.+-+||+|.|+|-|-+....
T Consensus 323 ~V~NHG~l~~~ef~~lL~~akvfiGlGfP~E----gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhP 398 (559)
T PF15024_consen 323 FVKNHGILSGDEFQQLLRKAKVFIGLGFPYE----GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHP 398 (559)
T ss_pred hhhhcCcCCHHHHHHHHHhhhEeeecCCCCC----CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCCh
Confidence 455566 67899999999999995 34445 466799999999999765431
Q ss_pred hhH-hhhcCCeEEEEcCCCHHHHHHHHHHHHhCc
Q 003758 228 IKE-YVAEGAQVIFFQKDNPEGLSRAFSLFISNG 260 (797)
Q Consensus 228 i~E-iI~Dg~nG~Lfd~~D~eeLAeaI~~LLedp 260 (797)
..| +|. .-..+.++.+|..++.+||.+++..+
T Consensus 399 Y~e~~iG-~PhVytVd~~n~~~v~~Avk~il~~~ 431 (559)
T PF15024_consen 399 YAEEFIG-EPHVYTVDINNSTEVEAAVKAILATP 431 (559)
T ss_pred HHHhhCC-CCeEEEEcCCCHHHHHHHHHHHHhcC
Confidence 111 232 23588899999999999999999875
No 166
>PLN00164 glucosyltransferase; Provisional
Probab=86.96 E-value=5.4 Score=46.72 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=50.0
Q ss_pred HHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhh-hcCCeEEEEcC-------CCHHHHHHHH
Q 003758 186 NGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYV-AEGAQVIFFQK-------DNPEGLSRAF 253 (797)
Q Consensus 186 ~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI-~Dg~nG~Lfd~-------~D~eeLAeaI 253 (797)
..+|+..++..+-|+ +.-++++||+++|+|+|+-..- .....+ ..-+.|+.+.. -+.++++++|
T Consensus 350 ~~iL~h~~vg~fvtH----~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av 425 (480)
T PLN00164 350 KEILAHAAVGGFVTH----CGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAV 425 (480)
T ss_pred HHHhcCcccCeEEee----cccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHH
Confidence 457888886555443 3346889999999999986544 455444 44456776632 2578999999
Q ss_pred HHHHhCcc
Q 003758 254 SLFISNGK 261 (797)
Q Consensus 254 ~~LLedpe 261 (797)
.+++.+++
T Consensus 426 ~~vm~~~~ 433 (480)
T PLN00164 426 RSLMGGGE 433 (480)
T ss_pred HHHhcCCc
Confidence 99998753
No 167
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=86.79 E-value=3.1 Score=37.89 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=52.5
Q ss_pred EEEeC-CCCCCHHHHHHHHHHcCCCCCeEEE---ec-Chh--hHHHHHHHcCEEEEccCCCCCC---ccHHHHHHHHhCC
Q 003758 149 FLCGN-STDGYNDALQEVASRLGLLEHSVRH---YG-FNG--DVNGVLLMADIVLYGSSQVEQG---FPSLIVRAMTFGI 218 (797)
Q Consensus 149 IIvG~-g~~~Y~e~Leela~elgL~d~~V~f---lG-~~e--dl~~~L~aADV~V~PS~~Ee~G---FPlvLLEAMA~G~ 218 (797)
+|+|. ... ...+++.+++.|... +.+ -| ... .+...+..+|++|+++.+- + .-.+--+|-..|+
T Consensus 3 liVGG~~~~--~~~~~~~~~~~G~~~--~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~v--sH~~~~~vk~~akk~~i 76 (97)
T PF10087_consen 3 LIVGGREDR--ERRYKRILEKYGGKL--IHHGRDGGDEKKASRLPSKIKKADLVIVFTDYV--SHNAMWKVKKAAKKYGI 76 (97)
T ss_pred EEEcCCccc--HHHHHHHHHHcCCEE--EEEecCCCCccchhHHHHhcCCCCEEEEEeCCc--ChHHHHHHHHHHHHcCC
Confidence 44454 333 489999999999873 555 12 223 3899999999999876544 2 2234445677899
Q ss_pred cEEEcCCCChhHhh
Q 003758 219 PVITPDFPIIKEYV 232 (797)
Q Consensus 219 PVIasd~gGi~EiI 232 (797)
|++-++..+...+.
T Consensus 77 p~~~~~~~~~~~l~ 90 (97)
T PF10087_consen 77 PIIYSRSRGVSSLE 90 (97)
T ss_pred cEEEECCCCHHHHH
Confidence 99999877766544
No 168
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=86.45 E-value=6 Score=46.53 Aligned_cols=82 Identities=7% Similarity=-0.031 Sum_probs=55.6
Q ss_pred eEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhh-hcCCeEEEEcC----CC
Q 003758 175 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYV-AEGAQVIFFQK----DN 245 (797)
Q Consensus 175 ~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI-~Dg~nG~Lfd~----~D 245 (797)
.+.+.+... -..+|+...+..+-|+ +.-++++||+.+|+|+|+-... .....+ ..-+.|..++. -+
T Consensus 339 g~vv~~W~P-Q~~iL~h~~vg~FitH----~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~ 413 (481)
T PLN02992 339 GFVVPSWAP-QAEILAHQAVGGFLTH----CGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVIS 413 (481)
T ss_pred CEEEeecCC-HHHHhCCcccCeeEec----CchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCccc
Confidence 466666321 2346777777444443 4457889999999999987655 355555 35556776643 36
Q ss_pred HHHHHHHHHHHHhCcc
Q 003758 246 PEGLSRAFSLFISNGK 261 (797)
Q Consensus 246 ~eeLAeaI~~LLedpe 261 (797)
.+++.++|.+++.+++
T Consensus 414 ~~~l~~av~~vm~~~~ 429 (481)
T PLN02992 414 RSKIEALVRKVMVEEE 429 (481)
T ss_pred HHHHHHHHHHHhcCCc
Confidence 8899999999998753
No 169
>PLN02207 UDP-glycosyltransferase
Probab=85.68 E-value=3.8 Score=47.93 Aligned_cols=77 Identities=14% Similarity=0.078 Sum_probs=49.6
Q ss_pred eEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhhc-CCeEEEEc-----
Q 003758 175 SVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAE-GAQVIFFQ----- 242 (797)
Q Consensus 175 ~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~D-g~nG~Lfd----- 242 (797)
++.+.+ ++. ++|+...+..+-|+ +.-++++||+++|+|+|+-... ....++.+ -+.|+-+.
T Consensus 333 ~g~i~~W~PQ~---~IL~H~~vg~FvTH----~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~ 405 (468)
T PLN02207 333 RGMICGWSPQV---EILAHKAVGGFVSH----CGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRV 405 (468)
T ss_pred CeEEEEeCCHH---HHhcccccceeeec----CccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEeccccc
Confidence 455556 343 35666666544443 2345789999999999986544 45554433 44565331
Q ss_pred ----CCCHHHHHHHHHHHHh
Q 003758 243 ----KDNPEGLSRAFSLFIS 258 (797)
Q Consensus 243 ----~~D~eeLAeaI~~LLe 258 (797)
.-+.+++.++|.+++.
T Consensus 406 ~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 406 HSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred ccCCcccHHHHHHHHHHHHh
Confidence 2267899999999997
No 170
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=85.41 E-value=12 Score=42.97 Aligned_cols=136 Identities=17% Similarity=0.212 Sum_probs=73.4
Q ss_pred CCEEEEEEcccccccccccc-HHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCC---CCeE
Q 003758 101 DEIVVVVVGSSFFYNELSWD-YAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLL---EHSV 176 (797)
Q Consensus 101 d~~vIL~VGrl~~~KGl~Kn-~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~---d~~V 176 (797)
...+++..|+......+++. ...++.++. +. +++.|+..+-..... . ... ++. .++|
T Consensus 277 ~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~----------~~-~~~~FiW~~~~~~~~---~---~~~--~~~~~~~~nV 337 (496)
T KOG1192|consen 277 HSVVYISFGSMVNSADLPEEQKKELAKALE----------SL-QGVTFLWKYRPDDSI---Y---FPE--GLPNRGRGNV 337 (496)
T ss_pred CCeEEEECCcccccccCCHHHHHHHHHHHH----------hC-CCceEEEEecCCcch---h---hhh--cCCCCCcCce
Confidence 35677778887532222211 223333332 22 566665555544332 1 122 222 2258
Q ss_pred EEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEE-cCCC---C-hhHhhhcCCeEEEEcC--CCHH
Q 003758 177 RHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVIT-PDFP---I-IKEYVAEGAQVIFFQK--DNPE 247 (797)
Q Consensus 177 ~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIa-sd~g---G-i~EiI~Dg~nG~Lfd~--~D~e 247 (797)
...+ ++.++. +....+.++-|+- |.+.+ +||+.+|+|+|+ +-.+ . ..-+.+.+..+.+... .+.+
T Consensus 338 ~~~~W~PQ~~ll--l~H~~v~~FvTHg---G~nSt-~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~ 411 (496)
T KOG1192|consen 338 VLSKWAPQNDLL--LDHPAVGGFVTHG---GWNST-LESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEE 411 (496)
T ss_pred EEecCCCcHHHh--cCCCcCcEEEECC---cccHH-HHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHH
Confidence 8867 554544 4444444554443 55544 999999999994 4444 3 4444445554444422 2344
Q ss_pred HHHHHHHHHHhCccc
Q 003758 248 GLSRAFSLFISNGKL 262 (797)
Q Consensus 248 eLAeaI~~LLedpel 262 (797)
+..++..++++++.
T Consensus 412 -~~~~~~~il~~~~y 425 (496)
T KOG1192|consen 412 -LLEAIKEILENEEY 425 (496)
T ss_pred -HHHHHHHHHcChHH
Confidence 89999999988876
No 171
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=84.79 E-value=29 Score=42.96 Aligned_cols=148 Identities=11% Similarity=0.092 Sum_probs=103.2
Q ss_pred CCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeC--CCCCCHHHHHHHHHH---------
Q 003758 100 KDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGN--STDGYNDALQEVASR--------- 168 (797)
Q Consensus 100 ~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~--g~~~Y~e~Leela~e--------- 168 (797)
.+.++|+-+-++..-+|. ..=+.++..++.++++.. .++. ++.+.. ..+. +.+++....
T Consensus 274 ~g~klilgvD~~d~~kg~----~~Kl~a~e~~L~~~pe~~---~kVv-liqi~~~~~~~~--~~v~~~k~~v~~~v~rIn 343 (732)
T KOG1050|consen 274 KGKKLILGVDRLDSIKGI----QLKLLAFEQFLEEYPEWI---DKVV-LIQIENPKRTDG--KEVEELKFCVSVHVRRIN 343 (732)
T ss_pred cCCceEecccccccccCc----hHHHHHHHHHHHhChhhh---ceEE-EEEEecCCcccc--hHHHHHHHHhHhhhhhhh
Confidence 366677766666655444 666778888888888766 4444 233332 2222 222222111
Q ss_pred --cCC-C-CCeEEEec---ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhC----CcEEEcCCCChhHhhhcCCe
Q 003758 169 --LGL-L-EHSVRHYG---FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFG----IPVITPDFPIIKEYVAEGAQ 237 (797)
Q Consensus 169 --lgL-~-d~~V~flG---~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G----~PVIasd~gGi~EiI~Dg~n 237 (797)
.+- . . .|+++- +..++.+++..+|+.+..+..+ |..++.+|+.+|. .+.|.+...|.....+++
T Consensus 344 ~~f~~~~~~-pV~~~~~~~~~~~l~a~~~Vaev~~v~s~rd--Gmnl~~~e~i~~~~~~~~~lVlsef~G~~~tl~d~-- 418 (732)
T KOG1050|consen 344 EKFGSASYQ-PVHSLLKDLPFLELLALYKVAEVCPVTSWRD--GMNLVFLEYILCQENKKSVLVLSEFIGDDTTLEDA-- 418 (732)
T ss_pred hccCCcccc-eEEEeeccCCHHHHhhhHHhhhheeeccccc--ccchhhhHHHHhhcccCCceEEeeecccccccccc--
Confidence 111 1 2 344443 5567999999999999999998 9999999999885 678889988888888776
Q ss_pred EEEEcCCCHHHHHHHHHHHHhCccc
Q 003758 238 VIFFQKDNPEGLSRAFSLFISNGKL 262 (797)
Q Consensus 238 G~Lfd~~D~eeLAeaI~~LLedpel 262 (797)
..++.+-|.+.++.+|..++..++.
T Consensus 419 aivvnpw~~~~~~~~i~~al~~s~~ 443 (732)
T KOG1050|consen 419 AIVVNPWDGDEFAILISKALTMSDE 443 (732)
T ss_pred CEEECCcchHHHHHHHHHHhhcCHH
Confidence 6788899999999999999987764
No 172
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=84.57 E-value=10 Score=42.04 Aligned_cols=103 Identities=14% Similarity=0.129 Sum_probs=59.6
Q ss_pred CCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEec
Q 003758 101 DEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG 180 (797)
Q Consensus 101 d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG 180 (797)
++.+++..|.....|.. ..+...+.+..|. + .++++++++|.+..+ ....+++++...... .+.+.|
T Consensus 183 ~~~i~i~pga~~~~K~W--p~e~fa~l~~~L~-------~--~~~~vvl~ggp~e~e-~~~~~~i~~~~~~~~-~~~l~g 249 (352)
T PRK10422 183 QNYVVIQPTARQIFKCW--DNDKFSAVIDALQ-------A--RGYEVVLTSGPDKDD-LACVNEIAQGCQTPP-VTALAG 249 (352)
T ss_pred CCeEEEecCCCccccCC--CHHHHHHHHHHHH-------H--CCCeEEEEcCCChHH-HHHHHHHHHhcCCCc-cccccC
Confidence 45666777765555432 3344444444442 1 245643444433322 122344444322222 355677
Q ss_pred --ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEc
Q 003758 181 --FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 223 (797)
Q Consensus 181 --~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIas 223 (797)
+..++..+++.||++|..- + ..+-=|.|+|+|+|+-
T Consensus 250 ~~sL~el~ali~~a~l~v~nD-----S--Gp~HlAaA~g~P~v~l 287 (352)
T PRK10422 250 KTTFPELGALIDHAQLFIGVD-----S--APAHIAAAVNTPLICL 287 (352)
T ss_pred CCCHHHHHHHHHhCCEEEecC-----C--HHHHHHHHcCCCEEEE
Confidence 5688999999999999842 3 3447788999999964
No 173
>PLN00414 glycosyltransferase family protein
Probab=83.29 E-value=9.1 Score=44.54 Aligned_cols=70 Identities=9% Similarity=0.012 Sum_probs=49.8
Q ss_pred HHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhh-cCCeEEEEcC-----CCHHHHHHHHHHH
Q 003758 187 GVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVA-EGAQVIFFQK-----DNPEGLSRAFSLF 256 (797)
Q Consensus 187 ~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~-Dg~nG~Lfd~-----~D~eeLAeaI~~L 256 (797)
.+|+...+..+-++ +.-++++||+++|+|+|+-... ....++. .-+.|..+.. -+.+++.+++.++
T Consensus 324 ~vL~h~~v~~fvtH----~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~ 399 (446)
T PLN00414 324 LILSHPSVGCFVNH----CGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSV 399 (446)
T ss_pred HHhcCCccceEEec----CchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHH
Confidence 46767755444333 3357889999999999986654 4555664 4566777742 4789999999999
Q ss_pred HhCc
Q 003758 257 ISNG 260 (797)
Q Consensus 257 Ledp 260 (797)
+.++
T Consensus 400 m~~~ 403 (446)
T PLN00414 400 MDKD 403 (446)
T ss_pred hcCC
Confidence 9865
No 174
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.10 E-value=11 Score=45.31 Aligned_cols=152 Identities=13% Similarity=0.104 Sum_probs=95.2
Q ss_pred HHHHcCCCCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCC
Q 003758 92 LRKENGFLKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGL 171 (797)
Q Consensus 92 lR~klGL~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL 171 (797)
.|.+++++.+.+++.-+-.+...+ ...++.+.+++... |+-.+.++.=..-. ...++..+.++|+
T Consensus 749 ~r~~y~Lp~d~vvf~~FNqLyKid------P~~l~~W~~ILk~V-------PnS~LwllrfPa~g--e~rf~ty~~~~Gl 813 (966)
T KOG4626|consen 749 TRSQYGLPEDAVVFCNFNQLYKID------PSTLQMWANILKRV-------PNSVLWLLRFPAVG--EQRFRTYAEQLGL 813 (966)
T ss_pred CCCCCCCCCCeEEEeechhhhcCC------HHHHHHHHHHHHhC-------CcceeEEEeccccc--hHHHHHHHHHhCC
Confidence 567889999887766665443322 55677777776443 44442222211112 2788999999999
Q ss_pred CCCeEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhH-----hhhcCCeEEEEcCC
Q 003758 172 LEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKE-----YVAEGAQVIFFQKD 244 (797)
Q Consensus 172 ~d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~E-----iI~Dg~nG~Lfd~~ 244 (797)
+..+|.|.. ..++=..-...+||.+=+-... | -.+-.+.+-+|+|+|+-.-..... ++..-..|-++ ..
T Consensus 814 ~p~riifs~va~k~eHvrr~~LaDv~LDTplcn--G-hTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hli-ak 889 (966)
T KOG4626|consen 814 EPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCN--G-HTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLI-AK 889 (966)
T ss_pred CccceeeccccchHHHHHhhhhhhhcccCcCcC--C-cccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHH-hh
Confidence 887899988 4466666788899988766554 2 234478899999999765442211 11111112222 25
Q ss_pred CHHHHHHHHHHHHhCccc
Q 003758 245 NPEGLSRAFSLFISNGKL 262 (797)
Q Consensus 245 D~eeLAeaI~~LLedpel 262 (797)
+-++..+.-.++-.|.+.
T Consensus 890 ~~eEY~~iaV~Latd~~~ 907 (966)
T KOG4626|consen 890 NREEYVQIAVRLATDKEY 907 (966)
T ss_pred hHHHHHHHHHHhhcCHHH
Confidence 677788877777777664
No 175
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=82.47 E-value=9.7 Score=39.56 Aligned_cols=104 Identities=14% Similarity=0.195 Sum_probs=53.9
Q ss_pred CCCCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEE
Q 003758 99 LKDEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRH 178 (797)
Q Consensus 99 ~~d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~f 178 (797)
..+..+++..|.....|.. ..+...+.+..| .+.+ +++ +++|...+...+....+.+ +..+..+.+
T Consensus 103 ~~~~~i~i~~~a~~~~k~w--p~e~~~~l~~~l-------~~~~--~~v-vl~g~~~~~~~~~~~~~~~--~~~~~~~~~ 168 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRW--PAEKWAELIERL-------KERG--YRV-VLLGGPEEQEKEIADQIAA--GLQNPVINL 168 (247)
T ss_dssp TTSSEEEEE---SSGGGS----HHHHHHHHHHH-------CCCT---EE-EE--SSHHHHHHHHHHHHT--THTTTTEEE
T ss_pred ccCCeEEEeecCCCccccC--CHHHHHHHHHHH-------HhhC--ceE-EEEccchHHHHHHHHHHHH--hcccceEee
Confidence 3456677777776655432 333344444444 2222 674 5666554310122233333 222114777
Q ss_pred ec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEc
Q 003758 179 YG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 223 (797)
Q Consensus 179 lG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIas 223 (797)
.| +..++..+++.||++|.+ + + ..+-=|.|+|+|+|+-
T Consensus 169 ~~~~~l~e~~ali~~a~~~I~~---D--t--g~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 169 AGKTSLRELAALISRADLVIGN---D--T--GPMHLAAALGTPTVAL 208 (247)
T ss_dssp TTTS-HHHHHHHHHTSSEEEEE---S--S--HHHHHHHHTT--EEEE
T ss_pred cCCCCHHHHHHHHhcCCEEEec---C--C--hHHHHHHHHhCCEEEE
Confidence 77 567899999999999995 2 3 4457899999999986
No 176
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=81.29 E-value=24 Score=35.61 Aligned_cols=122 Identities=18% Similarity=0.270 Sum_probs=67.4
Q ss_pred EEEEEEccccccccccccHHHHHHHHH--HHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEec
Q 003758 103 IVVVVVGSSFFYNELSWDYAVAMHDVG--PLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG 180 (797)
Q Consensus 103 ~vIL~VGrl~~~KGl~Kn~~lLLkAl~--~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG 180 (797)
.+++.||+-. ++.++.++. ..+++. + +..=.++++-+|+|.....+.........|+ .|....
T Consensus 5 ~vFVTVGtT~--------Fd~LI~~Vl~~~~~~~L---~-k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl---~id~y~ 69 (170)
T KOG3349|consen 5 TVFVTVGTTS--------FDDLISCVLSEEFLQEL---Q-KRGFTKLIIQIGRGQPFFGDPIDLIRKNGGL---TIDGYD 69 (170)
T ss_pred EEEEEecccc--------HHHHHHHHcCHHHHHHH---H-HcCccEEEEEecCCccCCCCHHHhhcccCCe---EEEEEe
Confidence 4788888622 355555542 111111 1 2233455677888732222333322222222 244445
Q ss_pred ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC--------ChhHhhhcCCeEEEEcCCC
Q 003758 181 FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP--------IIKEYVAEGAQVIFFQKDN 245 (797)
Q Consensus 181 ~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g--------Gi~EiI~Dg~nG~Lfd~~D 245 (797)
+...+.++++.||++|.- +...+++|.+..|+|.|+--+. .+++.+.+.+.-+.+.+.+
T Consensus 70 f~psl~e~I~~AdlVIsH------AGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C~ps~ 136 (170)
T KOG3349|consen 70 FSPSLTEDIRSADLVISH------AGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYCTPST 136 (170)
T ss_pred cCccHHHHHhhccEEEec------CCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEEeeccc
Confidence 778899999999999973 3345789999999996654332 2444444443344455444
No 177
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=81.12 E-value=1.5 Score=46.78 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=53.4
Q ss_pred hhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhC-CcEEEcCCC--ChhHhhhcCCeEEEEcCCCHHHHHHHHHH
Q 003758 182 NGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFG-IPVITPDFP--IIKEYVAEGAQVIFFQKDNPEGLSRAFSL 255 (797)
Q Consensus 182 ~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G-~PVIasd~g--Gi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~ 255 (797)
..+..+.|+.|...+.|.-.- .+..-++|||++| +|||.++.- ...+++.=....+.++..+..+|.+.|..
T Consensus 227 ~~~~~~~l~~S~FCL~p~G~~--~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL~~ 301 (302)
T PF03016_consen 227 PSEYMELLRNSKFCLCPRGDG--PWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEILRS 301 (302)
T ss_pred chHHHHhcccCeEEEECCCCC--cccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHHhc
Confidence 446889999999999987654 5788999999999 788887644 56666754556777777777666665543
No 178
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=80.98 E-value=22 Score=39.14 Aligned_cols=103 Identities=14% Similarity=0.183 Sum_probs=59.1
Q ss_pred CCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEec
Q 003758 101 DEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG 180 (797)
Q Consensus 101 d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG 180 (797)
+..+++..|+....|. +..+...+.+..|. . .++.+ +++|...+.-.+..+++.+..+... .+.+.|
T Consensus 181 ~~~i~i~p~a~~~~K~--Wp~e~~~~l~~~l~-------~--~~~~i-vl~g~p~~~e~~~~~~i~~~~~~~~-~~~l~g 247 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKC--WDNDRFSALIDALH-------A--RGYEV-VLTSGPDKDELAMVNEIAQGCQTPR-VTSLAG 247 (344)
T ss_pred CCEEEEeCCCCccccC--CCHHHHHHHHHHHH-------h--CCCeE-EEecCCCHHHHHHHHHHHhhCCCCc-ccccCC
Confidence 3456666666554443 33444455554442 1 24564 5555332110123344434333222 345677
Q ss_pred --ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEc
Q 003758 181 --FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 223 (797)
Q Consensus 181 --~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIas 223 (797)
+..++..+++.||++|.. + + ..+-=|.|+|+|+|+-
T Consensus 248 ~~sL~el~ali~~a~l~Vs~---D--S--Gp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 248 KLTLPQLAALIDHARLFIGV---D--S--VPMHMAAALGTPLVAL 285 (344)
T ss_pred CCCHHHHHHHHHhCCEEEec---C--C--HHHHHHHHcCCCEEEE
Confidence 568999999999999985 2 3 4457899999999974
No 179
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=80.75 E-value=25 Score=38.86 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=62.2
Q ss_pred HHHHcCCC-CCCEEEEEEcccc-ccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHc
Q 003758 92 LRKENGFL-KDEIVVVVVGSSF-FYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRL 169 (797)
Q Consensus 92 lR~klGL~-~d~~vIL~VGrl~-~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~el 169 (797)
....+++. .+..+++..|... ..|. +-.+...+.+..|. ..++++ +++|...+. +..+++++..
T Consensus 170 ~~~~~~~~~~~~~i~i~pga~~~~~K~--Wp~e~~a~l~~~l~---------~~~~~v-vl~Gg~~e~--~~~~~i~~~~ 235 (348)
T PRK10916 170 TCAAFSLSSERPIIGFCPGAEFGPAKR--WPHYHYAELAQQLI---------DEGYQV-VLFGSAKDH--EAGNEILAAL 235 (348)
T ss_pred HHHHcCCCCCCCEEEEeCCCCCccccC--CCHHHHHHHHHHHH---------HCCCeE-EEEeCHHhH--HHHHHHHHhc
Confidence 34445553 3345555666542 4443 23334444444442 124664 556654443 4445544443
Q ss_pred CCC--CCeEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEc
Q 003758 170 GLL--EHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 223 (797)
Q Consensus 170 gL~--d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIas 223 (797)
+.. ...+.+.| +-.++..+++.|+++|..- + ..+-=|.|.|+|+|+-
T Consensus 236 ~~~~~~~~~~l~g~~sL~el~ali~~a~l~I~nD-----T--Gp~HlAaA~g~P~val 286 (348)
T PRK10916 236 NTEQQAWCRNLAGETQLEQAVILIAACKAIVTND-----S--GLMHVAAALNRPLVAL 286 (348)
T ss_pred ccccccceeeccCCCCHHHHHHHHHhCCEEEecC-----C--hHHHHHHHhCCCEEEE
Confidence 221 10245566 5688999999999999842 3 3457899999999963
No 180
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=80.50 E-value=31 Score=37.43 Aligned_cols=100 Identities=17% Similarity=0.079 Sum_probs=57.6
Q ss_pred CCEEEEEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEec
Q 003758 101 DEIVVVVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG 180 (797)
Q Consensus 101 d~~vIL~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG 180 (797)
.+.+++..|.....|. +-.+...+.+..|. + .++++ +++|.++.+ .+..+++.+. .+. ..+.|
T Consensus 179 ~~~i~i~~gas~~~K~--wp~e~~~~l~~~l~-------~--~~~~~-vl~~g~~~e-~~~~~~i~~~--~~~--~~l~g 241 (319)
T TIGR02193 179 APYAVLLHATSRDDKT--WPEERWRELARLLL-------A--RGLQI-VLPWGNDAE-KQRAERIAEA--LPG--AVVLP 241 (319)
T ss_pred CCEEEEEeCCCcccCC--CCHHHHHHHHHHHH-------H--CCCeE-EEeCCCHHH-HHHHHHHHhh--CCC--CeecC
Confidence 4556667776554443 23344444444442 1 24564 454333322 1334444442 332 34567
Q ss_pred --ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcC
Q 003758 181 --FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPD 224 (797)
Q Consensus 181 --~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd 224 (797)
+-.++..+++.||++|..- + ..+-=|.|+|+|+|+-=
T Consensus 242 ~~sL~el~ali~~a~l~I~~D-----S--gp~HlAaa~g~P~i~lf 280 (319)
T TIGR02193 242 KMSLAEVAALLAGADAVVGVD-----T--GLTHLAAALDKPTVTLY 280 (319)
T ss_pred CCCHHHHHHHHHcCCEEEeCC-----C--hHHHHHHHcCCCEEEEE
Confidence 6678999999999999852 3 34477889999999753
No 181
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=79.62 E-value=71 Score=34.47 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC
Q 003758 160 DALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP 226 (797)
Q Consensus 160 e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g 226 (797)
...+++...+.-+. .|......+++..+++.||++|....+ .++-|+.+|+|+|+-...
T Consensus 220 ~~~~~l~~~~~~~~-~i~~~~~~~e~~~~i~~~~~vI~~RlH-------~~I~A~~~gvP~i~i~y~ 278 (298)
T TIGR03609 220 PLARALRDQLLGPA-EVLSPLDPEELLGLFASARLVIGMRLH-------ALILAAAAGVPFVALSYD 278 (298)
T ss_pred HHHHHHHHhcCCCc-EEEecCCHHHHHHHHhhCCEEEEechH-------HHHHHHHcCCCEEEeecc
Confidence 44455555544333 444333667889999999988875443 458899999999976443
No 182
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=78.29 E-value=18 Score=39.54 Aligned_cols=42 Identities=24% Similarity=0.059 Sum_probs=33.4
Q ss_pred eEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEc
Q 003758 175 SVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP 223 (797)
Q Consensus 175 ~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIas 223 (797)
.+.+.| +-.++..+++.||++|..- + ..+-=|.|+|+|+|+-
T Consensus 235 ~~~l~g~~sL~elaali~~a~l~I~nD-----S--Gp~HlA~A~g~p~val 278 (322)
T PRK10964 235 YVEVLPKLSLEQVARVLAGAKAVVSVD-----T--GLSHLTAALDRPNITL 278 (322)
T ss_pred cceecCCCCHHHHHHHHHhCCEEEecC-----C--cHHHHHHHhCCCEEEE
Confidence 466777 6688999999999999842 3 3457899999999974
No 183
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=75.59 E-value=89 Score=31.72 Aligned_cols=38 Identities=21% Similarity=0.360 Sum_probs=31.8
Q ss_pred ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCC
Q 003758 181 FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDF 225 (797)
Q Consensus 181 ~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~ 225 (797)
...++..+++.++++|..... ..+=|+++|+|+|+-+.
T Consensus 247 ~~~~~~~~~~~~~~~Is~RlH-------~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 247 SPDELLELISQADLVISMRLH-------GAILALSLGVPVIAISY 284 (286)
T ss_pred CHHHHHHHHhcCCEEEecCCH-------HHHHHHHcCCCEEEEec
Confidence 678899999999999996654 34889999999998654
No 184
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=71.95 E-value=88 Score=36.01 Aligned_cols=92 Identities=14% Similarity=0.143 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCCCCeEEEec-Ch-hhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhh
Q 003758 160 DALQEVASRLGLLEHSVRHYG-FN-GDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVA 233 (797)
Q Consensus 160 e~Leela~elgL~d~~V~flG-~~-edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~ 233 (797)
.-...++....-.. +|.+.. +. +++...++++|++|- +++ -+++-||++|+|+|+-... ++.+.+
T Consensus 253 ~va~~ia~~~~~~~-~i~~~~d~~~~~~~~~l~~~dl~Vg-~R~------HsaI~al~~g~p~i~i~Y~~K~~~l~~~~- 323 (385)
T COG2327 253 AVADAIAQLVLDSA-EILVSSDEYAEELGGILAACDLIVG-MRL------HSAIMALAFGVPAIAIAYDPKVRGLMQDL- 323 (385)
T ss_pred HHHHHHHhhcCCcc-ceEeecchHHHHHHHHhccCceEEe-ehh------HHHHHHHhcCCCeEEEeecHHHHHHHHHc-
Confidence 33344444433234 677776 44 567889999999887 454 3668899999999987655 333333
Q ss_pred cCCeEEEE--cCCCHHHHHHHHHHHHhCcc
Q 003758 234 EGAQVIFF--QKDNPEGLSRAFSLFISNGK 261 (797)
Q Consensus 234 Dg~nG~Lf--d~~D~eeLAeaI~~LLedpe 261 (797)
+-.++.. .+.|.+.+.+...+.+.+-+
T Consensus 324 -gl~~~~~~i~~~~~~~l~~~~~e~~~~~~ 352 (385)
T COG2327 324 -GLPGFAIDIDPLDAEILSAVVLERLTKLD 352 (385)
T ss_pred -CCCcccccCCCCchHHHHHHHHHHHhccH
Confidence 2234444 34567788888877776544
No 185
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=71.80 E-value=1.9e+02 Score=33.20 Aligned_cols=193 Identities=15% Similarity=0.183 Sum_probs=101.8
Q ss_pred HHHhccCEEEecCCchHHH---hhCCCCCCEEEeCCCCCCchhhhhcc-cc-hhH--HHHHHHcCCCCCCEEEEEEcccc
Q 003758 40 SVFSRVNVIVFPDYTLPML---YSVLDAGNFFVIPGSPADVWAVEAYS-KS-HEK--YQLRKENGFLKDEIVVVVVGSSF 112 (797)
Q Consensus 40 ~~~~~AD~VV~ps~~l~~i---~~gld~~ki~VIPnsGVDvw~ae~F~-~s-~~k--~slR~klGL~~d~~vIL~VGrl~ 112 (797)
......|++.+++.....+ ..++..+++..+ |+... +.+. .. ... ......++++.++.+|++.-...
T Consensus 144 ~~~~~~dy~~~~~~~~~~if~~~f~~~~~~i~~~---G~Pr~--D~~~~~~~~~~~~~~~~~~~~~~~~k~vIlyaPTfr 218 (388)
T COG1887 144 YVRNHWDYLISPNPESTAIFAEAFNIDKENILET---GYPRN--DKLFDEAGKTEDILLIQLALPLPQDKKVILYAPTFR 218 (388)
T ss_pred eeeeeeeeeeeCChhhHHHHHHHhcccccceeec---Ccccc--hhhhhhccchhhhHHHhhhcCCcccCceEEecCCcc
Confidence 3556667777776555444 235555555544 44431 2121 11 111 22344566777888988886533
Q ss_pred ccccc----cccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHc-CCCCCeEEEecChhhHHH
Q 003758 113 FYNEL----SWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRL-GLLEHSVRHYGFNGDVNG 187 (797)
Q Consensus 113 ~~KGl----~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~el-gL~d~~V~flG~~edl~~ 187 (797)
...+. .-+....+.++...+ ...+.. +|+=..+.- ....... ...+ -+..+....++.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~--ii~k~Hp~i-----s~~~~~~~~~~~-~~~~vs~~~di~d 282 (388)
T COG1887 219 DNDVLIGTQFFNLDIDIEKLKEKL--------GENEYV--IIVKPHPLI-----SDKIDKRYALDD-FVLDVSDNADIND 282 (388)
T ss_pred CCccccchhhhhhhhhHHHHHHhh--------ccCCeE--EEEecChhh-----hhhhhhhhhccc-eeEecccchhHHH
Confidence 22100 011111222221111 113444 444443322 1111111 2222 4556666779999
Q ss_pred HHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCC--h---hHhhhc---CCeEEEEcCCCHHHHHHHHHHHHhC
Q 003758 188 VLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPI--I---KEYVAE---GAQVIFFQKDNPEGLSRAFSLFISN 259 (797)
Q Consensus 188 ~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gG--i---~EiI~D---g~nG~Lfd~~D~eeLAeaI~~LLed 259 (797)
+|..+|++|. -++.+..|+|...+|||...... . +.+..| ...|-++ .+..++.++|...+.+
T Consensus 283 ll~~sDiLIT-------DySSv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~--~~~~~li~ai~~~~~~ 353 (388)
T COG1887 283 LLLVSDILIT-------DYSSVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVV--ETQEELIDAIKPYDED 353 (388)
T ss_pred HHhhhCEEEe-------echHHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCcccc--ccHHHHHHHHHhhhcc
Confidence 9999999998 67889999999999999653331 1 111211 1123333 3577888888888876
Q ss_pred ccc
Q 003758 260 GKL 262 (797)
Q Consensus 260 pel 262 (797)
++.
T Consensus 354 ~~~ 356 (388)
T COG1887 354 GNY 356 (388)
T ss_pred cch
Confidence 554
No 186
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=69.98 E-value=71 Score=32.38 Aligned_cols=114 Identities=11% Similarity=0.153 Sum_probs=67.5
Q ss_pred cEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHH--cCEEEEccCCCCC--CccHHHHHHHHh---C
Q 003758 145 FKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQ--GFPSLIVRAMTF---G 217 (797)
Q Consensus 145 vkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~a--ADV~V~PS~~Ee~--GFPlvLLEAMA~---G 217 (797)
++ ++++.+.+. ....+.......+.-. .+.......+....+.. .|++++-....+. ..|..+++.+.. +
T Consensus 4 ~~-Ilivdd~~~-~~~~l~~~L~~~~~~~-~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 4 MN-VIIADDHPI-VLFGIRKSLEQIEWVN-VVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred eE-EEEECCcHH-HHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCC
Confidence 45 466665543 1344555554332211 13333445555555543 6888875433310 146677777653 4
Q ss_pred CcEEEc-CCC---ChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 003758 218 IPVITP-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 261 (797)
Q Consensus 218 ~PVIas-d~g---Gi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpe 261 (797)
+|||+- ... .....+..|..||+..+.++++|.++|..++....
T Consensus 81 ~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~ 128 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKK 128 (216)
T ss_pred CcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCe
Confidence 676653 333 24456778899999999999999999999887554
No 187
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=67.50 E-value=32 Score=39.51 Aligned_cols=107 Identities=13% Similarity=0.194 Sum_probs=72.3
Q ss_pred CCCCccHHHHHHHHhCCcEEEcCCC---ChhHhhhcCCeEEEEcC-CCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Q 003758 202 VEQGFPSLIVRAMTFGIPVITPDFP---IIKEYVAEGAQVIFFQK-DNPEGLSRAFSLFISNGKLSKFARTVASAGRLHA 277 (797)
Q Consensus 202 Ee~GFPlvLLEAMA~G~PVIasd~g---Gi~EiI~Dg~nG~Lfd~-~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~a 277 (797)
|+.+++..+---|+||-.|+..+.. -..+.+...++-+=+.. +|..+|.++|..+.++++. +++|+++|++++
T Consensus 222 dG~~~S~RlkylL~c~SvVl~~~~~~~e~f~~~L~P~vHYVPV~~~~d~sdL~~~v~w~~~~~~~---A~~IA~~g~~f~ 298 (395)
T PF05686_consen 222 DGNAWSGRLKYLLACNSVVLKVKSPYYEFFYRALKPWVHYVPVKRDDDLSDLEEKVEWLNAHDDE---AQRIAENGQRFA 298 (395)
T ss_pred CCceeehhHHHHHcCCceEEEeCCcHHHHHHhhhcccccEEEeccccchhhHHHHhhhcccChHH---HHHHHHHHHHHH
Confidence 4345666777779999999886544 23334445555444443 4789999999999999887 999999999999
Q ss_pred HHhcHHHHHH----HHHHHHHHHhcCCCCCCCCCCCcccc
Q 003758 278 KNMLALDCVT----RYARILENVLNFPSDALLPGPISQLQ 313 (797)
Q Consensus 278 k~~~s~e~i~----~Y~kLLe~lL~~psea~~P~~vs~i~ 313 (797)
.++...+.+. ..+.-|.+++.+ ++..|....++.
T Consensus 299 ~~~L~~~~~~~Y~~~LL~eYa~l~~~--~p~~~~~~~ev~ 336 (395)
T PF05686_consen 299 REYLTMEDVYCYWRRLLLEYAKLLRF--KPTVPPGAEEVC 336 (395)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhCC--CCcCCCCceEec
Confidence 9888886644 233334455554 344455554443
No 188
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=67.36 E-value=43 Score=37.16 Aligned_cols=99 Identities=20% Similarity=0.243 Sum_probs=59.5
Q ss_pred CEEEEEEc-cccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEec
Q 003758 102 EIVVVVVG-SSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG 180 (797)
Q Consensus 102 ~~vIL~VG-rl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG 180 (797)
+.+++..| +....|. +-.+...+.+..|. +.+ .+ ++++|...+. +..+++.+.++.. +.+.|
T Consensus 176 ~~i~i~pg~s~~~~K~--wp~e~~~~l~~~l~-------~~~--~~-Vvl~g~~~e~--e~~~~i~~~~~~~---~~l~~ 238 (334)
T COG0859 176 PYIVINPGASRGSAKR--WPLEHYAELAELLI-------AKG--YQ-VVLFGGPDEE--ERAEEIAKGLPNA---VILAG 238 (334)
T ss_pred CeEEEeccccccccCC--CCHHHHHHHHHHHH-------HCC--CE-EEEecChHHH--HHHHHHHHhcCCc---cccCC
Confidence 44555566 3334432 23334444444442 223 66 4666655443 5556666644332 33666
Q ss_pred --ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcC
Q 003758 181 --FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPD 224 (797)
Q Consensus 181 --~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd 224 (797)
+-.++..+++.||++|.+. + ..+-=|.|.|+|+|+--
T Consensus 239 k~sL~e~~~li~~a~l~I~~D-----S--g~~HlAaA~~~P~I~iy 277 (334)
T COG0859 239 KTSLEELAALIAGADLVIGND-----S--GPMHLAAALGTPTIALY 277 (334)
T ss_pred CCCHHHHHHHHhcCCEEEccC-----C--hHHHHHHHcCCCEEEEE
Confidence 6789999999999999853 2 34477999999999743
No 189
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=67.25 E-value=2.5e+02 Score=32.74 Aligned_cols=94 Identities=17% Similarity=0.230 Sum_probs=55.4
Q ss_pred EEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHH-HHHhCCcEEEcCCC
Q 003758 148 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVR-AMTFGIPVITPDFP 226 (797)
Q Consensus 148 LIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLE-AMA~G~PVIasd~g 226 (797)
+.|++... +..++++.+++.. .-..+++..++..+||++..+.....-.+...+| |+.-....+.-|++
T Consensus 205 i~IaNRT~----erA~~La~~~~~~------~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDia 274 (414)
T COG0373 205 ITIANRTL----ERAEELAKKLGAE------AVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIA 274 (414)
T ss_pred EEEEcCCH----HHHHHHHHHhCCe------eecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEec
Confidence 45555433 6777788877722 2244689999999999999654432234443343 34444446777777
Q ss_pred ChhHhhhc---CCeEEEEcCCCHHHHHH
Q 003758 227 IIKEYVAE---GAQVIFFQKDNPEGLSR 251 (797)
Q Consensus 227 Gi~EiI~D---g~nG~Lfd~~D~eeLAe 251 (797)
..+++-.+ -.+-++++-+|.+.+++
T Consensus 275 vPRdie~~v~~l~~v~l~~iDDL~~iv~ 302 (414)
T COG0373 275 VPRDVEPEVGELPNVFLYTIDDLEEIVE 302 (414)
T ss_pred CCCCCCccccCcCCeEEEehhhHHHHHH
Confidence 65554332 23456776566555443
No 190
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=65.11 E-value=86 Score=27.61 Aligned_cols=102 Identities=18% Similarity=0.266 Sum_probs=64.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHH--cCEEEEccCCCCCCccHHHHHHHHh---CCcEEE-
Q 003758 149 FLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF---GIPVIT- 222 (797)
Q Consensus 149 IIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~a--ADV~V~PS~~Ee~GFPlvLLEAMA~---G~PVIa- 222 (797)
+|+.+.+. ....++...+..|+. .|......++....+.. .|++++-..... +-|..+++.+.. ++|+|.
T Consensus 2 livd~~~~-~~~~l~~~l~~~~~~--~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~ 77 (112)
T PF00072_consen 2 LIVDDDPE-IRELLEKLLERAGYE--EVTTASSGEEALELLKKHPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVV 77 (112)
T ss_dssp EEEESSHH-HHHHHHHHHHHTTEE--EEEEESSHHHHHHHHHHSTESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEE
T ss_pred EEEECCHH-HHHHHHHHHHhCCCC--EEEEECCHHHHHHHhcccCceEEEEEeeecc-ccccccccccccccccccEEEe
Confidence 44554433 245555666655653 36666666666666655 456666544442 556666666554 677764
Q ss_pred cCCC---ChhHhhhcCCeEEEEcCCCHHHHHHHHH
Q 003758 223 PDFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFS 254 (797)
Q Consensus 223 sd~g---Gi~EiI~Dg~nG~Lfd~~D~eeLAeaI~ 254 (797)
++.. ...+.+..|..|++..|-++++|.++|.
T Consensus 78 t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 78 TDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp ESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 4333 4556677889999999999999998874
No 191
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=64.87 E-value=39 Score=38.16 Aligned_cols=137 Identities=15% Similarity=0.147 Sum_probs=70.6
Q ss_pred CCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecC------hhhHH----HHHHHcCEEEEccCCCCCCccHHHHH
Q 003758 143 GSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGF------NGDVN----GVLLMADIVLYGSSQVEQGFPSLIVR 212 (797)
Q Consensus 143 pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~------~edl~----~~L~aADV~V~PS~~Ee~GFPlvLLE 212 (797)
.+.+ ++++|.|.-. ....+...+.|.. +|.+... .+++. .+...+||+|..|..-.-..|....|
T Consensus 173 ~~k~-vLvIGaGem~--~l~a~~L~~~g~~--~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~ 247 (338)
T PRK00676 173 KKAS-LLFIGYSEIN--RKVAYYLQRQGYS--RITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWE 247 (338)
T ss_pred cCCE-EEEEcccHHH--HHHHHHHHHcCCC--EEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHH
Confidence 4456 5888988754 5555555556765 4777661 22333 56779999998532111145666666
Q ss_pred HHHhCCcEEEcCCCChhHh--hhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 003758 213 AMTFGIPVITPDFPIIKEY--VAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDCVTRYA 290 (797)
Q Consensus 213 AMA~G~PVIasd~gGi~Ei--I~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~i~~Y~ 290 (797)
-+..-.+-+.-|....+++ +....+..+++ +++|.+.+.+=+. .+.+....+...+++. +..|-
T Consensus 248 ~~~~~~~r~~iDLAvPRdId~v~~~~~v~Ly~---iDdL~~i~~~n~~------~R~~~~~~ae~iI~~~-----~~~~~ 313 (338)
T PRK00676 248 SLADIPDRIVFDFNVPRTFPWSETPFPHRYLD---MDFISEWVQKHLQ------CRKEVNNKHKLSLREA-----AYKQW 313 (338)
T ss_pred HHhhccCcEEEEecCCCCCccccccCCcEEEE---hHHHHHHHHHHHH------HHHHHHHHHHHHHHHH-----HHHHH
Confidence 5553222344454433332 22233344664 5555544433221 1444444555555443 55555
Q ss_pred HHHHHHhc
Q 003758 291 RILENVLN 298 (797)
Q Consensus 291 kLLe~lL~ 298 (797)
..|++-..
T Consensus 314 ~~~~~~~~ 321 (338)
T PRK00676 314 ESYEKKLS 321 (338)
T ss_pred HHHHHHHh
Confidence 66655443
No 192
>PLN03015 UDP-glucosyl transferase
Probab=63.73 E-value=33 Score=40.39 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=45.1
Q ss_pred HHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhh-hcCCeEEEEc------CCCHHHHHHHHHHH
Q 003758 188 VLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYV-AEGAQVIFFQ------KDNPEGLSRAFSLF 256 (797)
Q Consensus 188 ~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI-~Dg~nG~Lfd------~~D~eeLAeaI~~L 256 (797)
+|+...+..+-++ +.-++++||+++|+|+|+-..- ....++ ..-+.|+-+. .-.-+++.+++..+
T Consensus 348 vL~h~~vg~fvtH----~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~l 423 (470)
T PLN03015 348 ILSHRSIGGFLSH----CGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKI 423 (470)
T ss_pred HhccCccCeEEec----CCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHH
Confidence 5666666555444 2346889999999999987654 344444 3444565552 13578999999999
Q ss_pred Hh
Q 003758 257 IS 258 (797)
Q Consensus 257 Le 258 (797)
+.
T Consensus 424 m~ 425 (470)
T PLN03015 424 VA 425 (470)
T ss_pred Hc
Confidence 95
No 193
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=61.75 E-value=1.1e+02 Score=29.73 Aligned_cols=80 Identities=14% Similarity=0.179 Sum_probs=54.2
Q ss_pred cChhhHHHHHH--HcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhhcCCeEEEEcCCCHHHHHHHH
Q 003758 180 GFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAEGAQVIFFQKDNPEGLSRAF 253 (797)
Q Consensus 180 G~~edl~~~L~--aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~Dg~nG~Lfd~~D~eeLAeaI 253 (797)
....+....+. ..|++++-....+ .-|..+++.+....|||..... .....+..|..|++..+.+.+.+.++|
T Consensus 34 ~~~~~~l~~~~~~~~dlvi~d~~~~~-~~g~~~~~~l~~~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i 112 (196)
T PRK10360 34 GSGREALAGLPGRGVQVCICDISMPD-ISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAV 112 (196)
T ss_pred CCHHHHHHHHhcCCCCEEEEeCCCCC-CCHHHHHHHHccCCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHH
Confidence 34444444443 3588887543321 4567778888778888764332 233456678889999999999999999
Q ss_pred HHHHhCc
Q 003758 254 SLFISNG 260 (797)
Q Consensus 254 ~~LLedp 260 (797)
..++...
T Consensus 113 ~~~~~~~ 119 (196)
T PRK10360 113 HTVATGG 119 (196)
T ss_pred HHHHcCC
Confidence 9998754
No 194
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=60.32 E-value=60 Score=38.08 Aligned_cols=71 Identities=13% Similarity=0.104 Sum_probs=49.1
Q ss_pred hhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhC-CcEEEcCCC--ChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHh
Q 003758 183 GDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFG-IPVITPDFP--IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 258 (797)
Q Consensus 183 edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G-~PVIasd~g--Gi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLe 258 (797)
....+.++.|-..+.|.-.+ .....+.||+..| +|||.++.- ...++++-..-++.++..+...+ |.++|.
T Consensus 335 ~~y~~~m~~S~FCL~p~Gd~--~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~v~~~---~~~iL~ 408 (464)
T KOG1021|consen 335 LNYMEGMQDSKFCLCPPGDT--PTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKDVPEL---IKNILL 408 (464)
T ss_pred chHHHHhhcCeEEECCCCCC--cccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEEHHHhhhH---HHHHHH
Confidence 56889999999999998877 6777999999999 799999874 34444443444555553344444 444443
No 195
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=59.09 E-value=47 Score=38.45 Aligned_cols=65 Identities=12% Similarity=0.182 Sum_probs=39.1
Q ss_pred hhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHh---hhcCCeEEEEcCCCHHHHHHHHH
Q 003758 183 GDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEY---VAEGAQVIFFQKDNPEGLSRAFS 254 (797)
Q Consensus 183 edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~Ei---I~Dg~nG~Lfd~~D~eeLAeaI~ 254 (797)
+++...+..+|++|..+... -++ +...+.-+.|.+.-|.+..+++ +.+-.+-.+++ .++|.+.+.
T Consensus 234 ~~l~~~l~~aDiVI~aT~a~---~~v-i~~~~~~~~~~~~iDLavPRdidp~v~~l~~v~l~~---iDdl~~i~~ 301 (414)
T PRK13940 234 SELPQLIKKADIIIAAVNVL---EYI-VTCKYVGDKPRVFIDISIPQALDPKLGELEQNVYYC---VDDINAVIE 301 (414)
T ss_pred HHHHHHhccCCEEEECcCCC---Cee-ECHHHhCCCCeEEEEeCCCCCCCccccCcCCeEEEe---HHHHHHHHH
Confidence 46778889999999977554 222 2244556889998888755543 22212244564 444444433
No 196
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=57.42 E-value=3.3e+02 Score=31.45 Aligned_cols=116 Identities=17% Similarity=0.177 Sum_probs=64.0
Q ss_pred ccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCC------CCHHHHHHHHHHcCCCCCeEEEec--ChhhHHHHHH
Q 003758 119 WDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTD------GYNDALQEVASRLGLLEHSVRHYG--FNGDVNGVLL 190 (797)
Q Consensus 119 Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~------~Y~e~Leela~elgL~d~~V~flG--~~edl~~~L~ 190 (797)
.+++..++++...+..-.......+.+. |+|.... .....++.+.+++|+.. +..+.| ..+++.. +.
T Consensus 138 ~G~~~a~~al~~~~~~~~~~~~~~~~VN---liG~~~~~~~~~~~d~~ei~~lL~~~Gi~v-~~~~~~~~~~~ei~~-~~ 212 (426)
T cd01972 138 SGFDAAFHGILRHLVPPQDPTKQEDSVN---IIGLWGGPERTEQEDVDEFKRLLNELGLRV-NAIIAGGCSVEELER-AS 212 (426)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCEE---EEccCCCccccccccHHHHHHHHHHcCCeE-EEEeCCCCCHHHHHh-cc
Confidence 5667777776544321100111223344 3453321 22478999999999986 555555 3344444 33
Q ss_pred HcCEEEEccCCCCCCccHHHHHHH--HhCCcEEEcCCC-ChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHh
Q 003758 191 MADIVLYGSSQVEQGFPSLIVRAM--TFGIPVITPDFP-IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 258 (797)
Q Consensus 191 aADV~V~PS~~Ee~GFPlvLLEAM--A~G~PVIasd~g-Gi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLe 258 (797)
.|.+-|..+. .++..+.+.| -+|+|.+....+ |+ ...+++.+.|.+++.
T Consensus 213 ~A~lniv~~~----~~g~~~a~~Lee~~GiP~~~~~~P~G~---------------~~T~~~l~~ia~~~g 264 (426)
T cd01972 213 EAAANVTLCL----DLGYYLGAALEQRFGVPEIKAPQPYGI---------------EATDKWLREIAKVLG 264 (426)
T ss_pred cCCEEEEECh----hHHHHHHHHHHHHhCCCeEecCCccCH---------------HHHHHHHHHHHHHhC
Confidence 4444444332 2356778887 589999865443 22 345566666666664
No 197
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=56.96 E-value=31 Score=33.93 Aligned_cols=69 Identities=19% Similarity=0.172 Sum_probs=39.3
Q ss_pred HHHHHHHcCEEEEc--cCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhhcCCeEEEEcCCCHHHHHHHHHHHH
Q 003758 185 VNGVLLMADIVLYG--SSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFI 257 (797)
Q Consensus 185 l~~~L~aADV~V~P--S~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LL 257 (797)
-..++..||++|.- -.+....-..-.-=|.|.|+|.|+-..+ .++|+-... +.-..+++..++.|..++
T Consensus 66 T~~li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~~~~~HpLKEvda~A----~a~~et~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 66 TRTLIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLHPEELHHPLKEVDAAA----LAVAETPEQVVEILRYVL 140 (141)
T ss_pred HHHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHhh----HhhhCCHHHHHHHHHHHh
Confidence 34589999999972 1111000111123468999999986655 455543222 233367777777777665
No 198
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=55.01 E-value=3.6e+02 Score=30.55 Aligned_cols=119 Identities=16% Similarity=0.200 Sum_probs=65.5
Q ss_pred ccccHHHHHHHHHHHHHHHhh-hccCCCCcEEEEEEeCC-CCCCHHHHHHHHHHcCCCCCeEEEec--ChhhHHHHHHHc
Q 003758 117 LSWDYAVAMHDVGPLLIKYAR-RNSVEGSFKFVFLCGNS-TDGYNDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMA 192 (797)
Q Consensus 117 l~Kn~~lLLkAl~~Ll~e~~~-lk~~~pdvkfLIIvG~g-~~~Y~e~Leela~elgL~d~~V~flG--~~edl~~~L~aA 192 (797)
...++..+++++...+..-.. ..+....+ -|+|.. .......++++.+..|+.. +..+.+ ..+++.. +..|
T Consensus 134 ~~~G~~~a~~al~~~l~~~~~~~~~~~~~V---Niig~~~~~~d~~el~~lL~~~Gi~~-~~~~~~~~~~~~i~~-~~~A 208 (406)
T cd01967 134 QSLGHHIANDAILDHLVGTKEPEEKTPYDV---NIIGEYNIGGDAWVIKPLLEELGIRV-NATFTGDGTVDELRR-AHRA 208 (406)
T ss_pred ccHHHHHHHHHHHHHhcCCCCcCCCCCCeE---EEEeccccchhHHHHHHHHHHcCCEE-EEEeCCCCCHHHHhh-CccC
Confidence 335577777777655432100 01112223 344542 1112478899999999986 555654 4566665 5555
Q ss_pred CEEEEccCCCCCCccHHHHHHHH--hCCcEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhC
Q 003758 193 DIVLYGSSQVEQGFPSLIVRAMT--FGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN 259 (797)
Q Consensus 193 DV~V~PS~~Ee~GFPlvLLEAMA--~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLed 259 (797)
.+-|..+.. ++..+.+.|. +|+|.+....- ...+.+++.+.|.+++..
T Consensus 209 ~~niv~~~~----~~~~~a~~L~~r~GiP~~~~~p~---------------G~~~t~~~l~~l~~~lg~ 258 (406)
T cd01967 209 KLNLVHCSR----SMNYLAREMEERYGIPYMEVNFY---------------GFEDTSESLRKIAKFFGD 258 (406)
T ss_pred CEEEEEChH----HHHHHHHHHHHhhCCCEEEecCC---------------cHHHHHHHHHHHHHHhCC
Confidence 554443321 2344455543 89999853211 124677788888887765
No 199
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=53.66 E-value=2.1e+02 Score=31.97 Aligned_cols=199 Identities=13% Similarity=0.123 Sum_probs=94.6
Q ss_pred HHHHHhccCEEEecCCc---hHHHh-hCCC-----CCCEEEeCCCCCCchhhhhcccchhHHHHHHHcCCCCCCEEE---
Q 003758 38 WKSVFSRVNVIVFPDYT---LPMLY-SVLD-----AGNFFVIPGSPADVWAVEAYSKSHEKYQLRKENGFLKDEIVV--- 105 (797)
Q Consensus 38 ~~~~~~~AD~VV~ps~~---l~~i~-~gld-----~~ki~VIPnsGVDvw~ae~F~~s~~k~slR~klGL~~d~~vI--- 105 (797)
+..+++++|+|+.-+.. .+.+. .-++ .+++.-.|.. ..|.++.+-...|..+......+..
T Consensus 114 le~~m~~~DvIfshs~~g~f~kv~m~~l~Ps~~~l~~~i~~~p~v-------~nfqpp~~i~~~Rstywkd~se~nmnv~ 186 (355)
T PF11440_consen 114 LEGTMNEMDVIFSHSDNGWFSKVLMKELLPSKVSLFDRIKKFPMV-------FNFQPPMDINKYRSTYWKDVSEKNMNVN 186 (355)
T ss_dssp HHHHHHH-SEEEES-TTSHHHHTHHHHHS-SS--SSS-------E-------EE----B-HHHHHHHH---GGGSEEEEE
T ss_pred HHHHHHhhcEEEeccccchHHHHHHHhhccccCchhhhhhhccee-------eecCCcccHHHHHHHHhhhhHhhhcccc
Confidence 44578899999865322 11111 1111 2344444431 3455544455677777766666655
Q ss_pred EEEccccccccccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHH------cC---------
Q 003758 106 VVVGSSFFYNELSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASR------LG--------- 170 (797)
Q Consensus 106 L~VGrl~~~KGl~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~e------lg--------- 170 (797)
+++|+....|| ....++.-...+ + .++++ .++-|-.... +......+ .+
T Consensus 187 ~yigR~Tt~kG----~~~mfD~h~~~l------K--~~~~~-t~~~GierS~---A~~~i~d~~~~~~y~~~~~~~~~~~ 250 (355)
T PF11440_consen 187 RYIGRQTTWKG----PRRMFDLHEKIL------K--PAGFK-TIMEGIERSP---AKISIKDHGIPYEYYPKLDCDEPKP 250 (355)
T ss_dssp EEE--SSGGG-----HHHHHHHHHHTT------T--TTT-E-EEEE---SST---HHHHHHHTT--EEEE-CTGGGG---
T ss_pred eeeeeeeeecC----cHHHhhhHHHhc------C--Ccchh-HHhhhhhcCC---ceeeeecCCcccccCccccccCccc
Confidence 89999887754 466666554442 2 36677 4677755442 22222222 11
Q ss_pred CCCCeEEEecC--hhhHHHHHHHcCEEEEccCCC----CCCccHHHHHHHHhC-CcEEEcCCCChh-------HhhhcCC
Q 003758 171 LLEHSVRHYGF--NGDVNGVLLMADIVLYGSSQV----EQGFPSLIVRAMTFG-IPVITPDFPIIK-------EYVAEGA 236 (797)
Q Consensus 171 L~d~~V~flG~--~edl~~~L~aADV~V~PS~~E----e~GFPlvLLEAMA~G-~PVIasd~gGi~-------EiI~Dg~ 236 (797)
-+++.+-++|. .++..+.|+.+-....-+... +...-.+-+|..||| +||.-...|..- -++...-
T Consensus 251 ~pN~~~~v~~~Yi~~E~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~~~~~ 330 (355)
T PF11440_consen 251 APNSPVPVYGPYIRSEGLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRYIDHPY 330 (355)
T ss_dssp SSS--EEEESS--HHHHHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBGGSS--
T ss_pred CCCCcceecchhhhHHHHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccccceeeecCceeeccCc
Confidence 13446778883 577888888886665444221 113457889999999 566655444211 2344344
Q ss_pred eEEEEcCCCHHHHHHHHHHHHhC
Q 003758 237 QVIFFQKDNPEGLSRAFSLFISN 259 (797)
Q Consensus 237 nG~Lfd~~D~eeLAeaI~~LLed 259 (797)
..+.++.+|.++-.+.|.++.++
T Consensus 331 ~~I~~De~dle~T~ekl~E~a~~ 353 (355)
T PF11440_consen 331 SAIYFDENDLESTVEKLIEVANN 353 (355)
T ss_dssp S-EEE-TTSHHHHHHHHHHHHT-
T ss_pred ceeEeccchHHHHHHHHHHHhcc
Confidence 46678999999999998888654
No 200
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=50.20 E-value=1.7e+02 Score=31.38 Aligned_cols=131 Identities=13% Similarity=0.158 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHc---CCCCCeEEEecChhh----HHHHHHH---
Q 003758 122 AVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRL---GLLEHSVRHYGFNGD----VNGVLLM--- 191 (797)
Q Consensus 122 ~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~el---gL~d~~V~flG~~ed----l~~~L~a--- 191 (797)
..++.++......+....+++...++++++|.--..-...+.++++++ ++.- .|.++|..++ +..++..
T Consensus 85 ~~~~~~i~iA~lalkhRqnk~~~~riVvFvGSpi~e~ekeLv~~akrlkk~~Vai-dii~FGE~~~~~e~l~~fida~N~ 163 (259)
T KOG2884|consen 85 ANFMTGIQIAQLALKHRQNKNQKQRIVVFVGSPIEESEKELVKLAKRLKKNKVAI-DIINFGEAENNTEKLFEFIDALNG 163 (259)
T ss_pred ccHHHHHHHHHHHHHhhcCCCcceEEEEEecCcchhhHHHHHHHHHHHHhcCeeE-EEEEeccccccHHHHHHHHHHhcC
Confidence 334444443333344444455568888888874433235666666655 4444 5777884322 3333333
Q ss_pred ----cCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhhhcC--CeEEEEcCCCHHHHHHHHHHHHhCcc
Q 003758 192 ----ADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYVAEG--AQVIFFQKDNPEGLSRAFSLFISNGK 261 (797)
Q Consensus 192 ----ADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI~Dg--~nG~Lfd~~D~eeLAeaI~~LLedpe 261 (797)
|+++.+|. .| +++-.-.-.|||.-+-++..--..-+ ...|-+++++--+||-+|.--++...
T Consensus 164 ~~~gshlv~Vpp------g~--~L~d~l~ssPii~ge~g~a~~~~~a~g~~f~fgvdp~~DPELAlALRlSMEEer 231 (259)
T KOG2884|consen 164 KGDGSHLVSVPP------GP--LLSDALLSSPIIQGEDGGAAAGLGANGMDFEFGVDPEDDPELALALRLSMEEER 231 (259)
T ss_pred CCCCceEEEeCC------Cc--cHHHHhhcCceeccCcccccccccccccccccCCCcccCHHHHHHHHhhHHHHH
Confidence 23444442 12 46666678899998765433222111 12233455555569999877666544
No 201
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=50.01 E-value=22 Score=33.79 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=32.5
Q ss_pred hhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhH
Q 003758 183 GDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKE 230 (797)
Q Consensus 183 edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~E 230 (797)
.++.+++..+||+|--|..+ ..--.+-.|+..|+|+|.-.+|...+
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~--~~~~~~~~~~~~g~~~ViGTTG~~~~ 104 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPD--AVYDNLEYALKHGVPLVIGTTGFSDE 104 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HH--HHHHHHHHHHHHT-EEEEE-SSSHHH
T ss_pred hhHHHhcccCCEEEEcCChH--HhHHHHHHHHhCCCCEEEECCCCCHH
Confidence 57889999999999877655 55566777889999999988886544
No 202
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=49.13 E-value=2.7e+02 Score=33.03 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=74.2
Q ss_pred EEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHc--CEEEEccCCCCCCccHHHHHHHHh---CCcEEE
Q 003758 148 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMA--DIVLYGSSQVEQGFPSLIVRAMTF---GIPVIT 222 (797)
Q Consensus 148 LIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aA--DV~V~PS~~Ee~GFPlvLLEAMA~---G~PVIa 222 (797)
++++-+..+- ...+.......|+ .|....+..+....+... |+++.=-... ..-|+.+++.+.. ++|||.
T Consensus 7 iLvVDDd~~i-r~~l~~~L~~~G~---~v~~a~~~~~al~~i~~~~~~lvl~Di~mp-~~~Gl~ll~~i~~~~~~~pVI~ 81 (464)
T COG2204 7 ILVVDDDPDI-RELLEQALELAGY---EVVTAESAEEALEALSESPFDLVLLDIRMP-GMDGLELLKEIKSRDPDLPVIV 81 (464)
T ss_pred EEEEeCCHHH-HHHHHHHHHHcCC---eEEEeCCHHHHHHHHhcCCCCEEEEecCCC-CCchHHHHHHHHhhCCCCCEEE
Confidence 4566555432 3445555566665 467777666666666665 5666533333 2567888888776 689875
Q ss_pred -cCCCC---hhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCccc
Q 003758 223 -PDFPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKL 262 (797)
Q Consensus 223 -sd~gG---i~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel 262 (797)
|..+. ..+-+..|..-|+..|-+++.|...+.+.++...+
T Consensus 82 ~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~ 125 (464)
T COG2204 82 MTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELREL 125 (464)
T ss_pred EeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhh
Confidence 55665 45556677778899999999999999999987654
No 203
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=44.76 E-value=2.1e+02 Score=32.71 Aligned_cols=138 Identities=14% Similarity=0.127 Sum_probs=91.2
Q ss_pred CcEEEEEEeCCCCCCHHHHHHHHHHcCC-CCCeEEEecChhhHHHHHHH-cCEEEEccCCCCCCccHHHHHHHHhCCcEE
Q 003758 144 SFKFVFLCGNSTDGYNDALQEVASRLGL-LEHSVRHYGFNGDVNGVLLM-ADIVLYGSSQVEQGFPSLIVRAMTFGIPVI 221 (797)
Q Consensus 144 dvkfLIIvG~g~~~Y~e~Leela~elgL-~d~~V~flG~~edl~~~L~a-ADV~V~PS~~Ee~GFPlvLLEAMA~G~PVI 221 (797)
-+.++.++-.-..+-...+...+..+.+ .++...|.|.. ++..+|+. .|++|.- -+ |.+.-....||+.-|=|.|
T Consensus 222 ~v~~~~V~Nt~~~ke~~~F~~f~~~ldlvr~gkasfegR~-~~p~fla~~tD~VvSH-qW-eN~lNYlY~daLyggYPLV 298 (364)
T PF10933_consen 222 AVEHVYVTNTYHLKEHPTFVNFANSLDLVRDGKASFEGRF-DFPDFLAQHTDAVVSH-QW-ENPLNYLYYDALYGGYPLV 298 (364)
T ss_pred hcceEEEecchhhhcCHHHHHHHHhhHHhhcCeeEEeeec-ChHHHHHhCCCEEEec-cc-cchhhHHHHHHHhcCCCcc
Confidence 3455566654333334777777777665 45567888844 45555544 6777753 33 3477889999999999988
Q ss_pred EcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH--HHHHHHHH
Q 003758 222 TPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC--VTRYARIL 293 (797)
Q Consensus 222 asd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~--i~~Y~kLL 293 (797)
-.. .++.+ .|+.++..|..+=++++.+++..-+.. .....++++..........- +..|.+.+
T Consensus 299 HNS-----~~l~d--~GYYY~~fD~~~G~r~L~~A~~~HD~~--~~~Y~~ra~~~l~~~~p~n~~nv~~y~~~L 363 (364)
T PF10933_consen 299 HNS-----PLLKD--VGYYYPDFDAFEGARQLLRAIREHDAD--LDAYRARARRLLDRLSPENPANVRAYEARL 363 (364)
T ss_pred cCc-----chhcc--cCcCCCCccHHHHHHHHHHHHHHcccc--HHHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Confidence 532 24444 599999999999999999998744321 56666777777666655433 55666554
No 204
>PRK09483 response regulator; Provisional
Probab=42.44 E-value=3.5e+02 Score=26.67 Aligned_cols=82 Identities=13% Similarity=0.039 Sum_probs=53.1
Q ss_pred ecChhhHHHHHHH--cCEEEEccCCCCCCccHHHHHHHHh---CCcEEEcCCC----ChhHhhhcCCeEEEEcCCCHHHH
Q 003758 179 YGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF---GIPVITPDFP----IIKEYVAEGAQVIFFQKDNPEGL 249 (797)
Q Consensus 179 lG~~edl~~~L~a--ADV~V~PS~~Ee~GFPlvLLEAMA~---G~PVIasd~g----Gi~EiI~Dg~nG~Lfd~~D~eeL 249 (797)
.....+....+.. .|++++-....+ ..|..+++.+.. .+|+|..... .....+..|..|++..+.+.+.+
T Consensus 33 ~~~~~~~~~~~~~~~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l 111 (217)
T PRK09483 33 ACCGEDAVKWCRTNAVDVVLMDMNMPG-IGGLEATRKILRYTPDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEV 111 (217)
T ss_pred eCCHHHHHHHHHhcCCCEEEEeCCCCC-CCHHHHHHHHHHHCCCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHH
Confidence 3344444444443 588887543321 456677766643 5777754332 34456677889999999999999
Q ss_pred HHHHHHHHhCcc
Q 003758 250 SRAFSLFISNGK 261 (797)
Q Consensus 250 AeaI~~LLedpe 261 (797)
..++..++....
T Consensus 112 ~~~i~~~~~g~~ 123 (217)
T PRK09483 112 VSAIRSVHSGQR 123 (217)
T ss_pred HHHHHHHHCCCc
Confidence 999999887543
No 205
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=42.31 E-value=70 Score=31.61 Aligned_cols=69 Identities=16% Similarity=0.095 Sum_probs=36.5
Q ss_pred HHHHHHHcCEEEEc--cCCCCCCccHHHHHHHHhCCcEEEcCCC----ChhHhhhcCCeEEEEcCCCHHHHHHHHHHHH
Q 003758 185 VNGVLLMADIVLYG--SSQVEQGFPSLIVRAMTFGIPVITPDFP----IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFI 257 (797)
Q Consensus 185 l~~~L~aADV~V~P--S~~Ee~GFPlvLLEAMA~G~PVIasd~g----Gi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LL 257 (797)
-..++..||++|.- -.+....-..-.-=|.|.|+|.|+-..+ .++|+-... +.-..+++..++.|..++
T Consensus 69 T~~li~~aDvvVvrFGekYKQWNaAfDAg~aaAlgKplI~lh~~~~~HpLKEvdaaA----~avaetp~Qvv~iL~Yv~ 143 (144)
T TIGR03646 69 TRKLIEKADVVIALFGEKYKQWNAAFDAGYAAALGKPLIILRPEELIHPLKEVDNKA----QAVVETPEQAIETLKYIL 143 (144)
T ss_pred HHHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHHH----HHHhcCHHHHHHHHHHhh
Confidence 34588999999972 1111000011123468999999986554 344432211 222356666666665543
No 206
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=41.19 E-value=1.2e+02 Score=32.69 Aligned_cols=89 Identities=11% Similarity=0.052 Sum_probs=58.8
Q ss_pred CCCCccHHHHHHHHhCCcEEEcCCC---ChhHhhhcCCeEEEEcCC-CHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Q 003758 202 VEQGFPSLIVRAMTFGIPVITPDFP---IIKEYVAEGAQVIFFQKD-NPEGLSRAFSLFISNGKLSKFARTVASAGRLHA 277 (797)
Q Consensus 202 Ee~GFPlvLLEAMA~G~PVIasd~g---Gi~EiI~Dg~nG~Lfd~~-D~eeLAeaI~~LLedpel~~~r~~m~~~aRk~a 277 (797)
|+.+++..+-=-|+|+-.||..... -..+.+...++=+-+..+ +.++|.++|..+.++++. ++.|+++|++.+
T Consensus 153 dG~~~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYvPv~~d~sd~~l~~~i~~~~~~~~~---a~~Ia~~~~~~~ 229 (256)
T smart00672 153 EGVAWSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIKSDLSCRELKEAVDWGNEHDKK---AQEIGKRGSEFI 229 (256)
T ss_pred CCccchhhHHHHHhcCceEEEeCCchhHHHHhcccCccceEEeeCCCchhhHHHHHHHHHhCHHH---HHHHHHHHHHHH
Confidence 4335666667778888888776644 233334444443333322 223499999999999987 999999999999
Q ss_pred HHhcHHHHHH-HHHHHH
Q 003758 278 KNMLALDCVT-RYARIL 293 (797)
Q Consensus 278 k~~~s~e~i~-~Y~kLL 293 (797)
.++...+.+. -+..++
T Consensus 230 ~~~L~~~~~~~Y~~~ll 246 (256)
T smart00672 230 QQNLSMEDVYDYMFHLL 246 (256)
T ss_pred HHHcCHHHHHHHHHHHH
Confidence 9988776644 333433
No 207
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=39.93 E-value=1.7e+02 Score=26.62 Aligned_cols=71 Identities=18% Similarity=0.332 Sum_probs=46.4
Q ss_pred CCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHH--HcCEEEEccCCCCCCccHHHHHHHHhCCc
Q 003758 142 EGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTFGIP 219 (797)
Q Consensus 142 ~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~--aADV~V~PS~~Ee~GFPlvLLEAMA~G~P 219 (797)
.+++++.-++...+ +..+..+++.+.+ ... ++.+++. ..|+++..+... .-.-.+.+|+..|++
T Consensus 23 ~~~~~v~~v~d~~~----~~~~~~~~~~~~~-----~~~---~~~~ll~~~~~D~V~I~tp~~--~h~~~~~~~l~~g~~ 88 (120)
T PF01408_consen 23 SPDFEVVAVCDPDP----ERAEAFAEKYGIP-----VYT---DLEELLADEDVDAVIIATPPS--SHAEIAKKALEAGKH 88 (120)
T ss_dssp TTTEEEEEEECSSH----HHHHHHHHHTTSE-----EES---SHHHHHHHTTESEEEEESSGG--GHHHHHHHHHHTTSE
T ss_pred CCCcEEEEEEeCCH----HHHHHHHHHhccc-----chh---HHHHHHHhhcCCEEEEecCCc--chHHHHHHHHHcCCE
Confidence 36666433444332 5666666766653 233 4666777 688888866554 556788999999999
Q ss_pred EEEcCCC
Q 003758 220 VITPDFP 226 (797)
Q Consensus 220 VIasd~g 226 (797)
|++-.-.
T Consensus 89 v~~EKP~ 95 (120)
T PF01408_consen 89 VLVEKPL 95 (120)
T ss_dssp EEEESSS
T ss_pred EEEEcCC
Confidence 9986533
No 208
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=37.34 E-value=7.3e+02 Score=28.94 Aligned_cols=120 Identities=15% Similarity=0.129 Sum_probs=65.4
Q ss_pred cccHHHHHHHHHHHHHHHhhhc-----cCCCCcEEEEEEeCCC-CCCHHHHHHHHHHcCCCCCeEEEecC--hhhHHHHH
Q 003758 118 SWDYAVAMHDVGPLLIKYARRN-----SVEGSFKFVFLCGNST-DGYNDALQEVASRLGLLEHSVRHYGF--NGDVNGVL 189 (797)
Q Consensus 118 ~Kn~~lLLkAl~~Ll~e~~~lk-----~~~pdvkfLIIvG~g~-~~Y~e~Leela~elgL~d~~V~flG~--~edl~~~L 189 (797)
..++..+++++-..+....... .....+ -|+|... ..-...++.+.+++|+.. +..+.+. .+++.. +
T Consensus 168 ~~G~~~a~~al~~~~~~~~~~~~~~~~~~~~~V---NiiG~~~~~~d~~el~~lL~~~Gl~v-~~~~~~~~s~eei~~-~ 242 (456)
T TIGR01283 168 NLGNKLACDALLKHVIGTREPEPIPVGTTVHDI---NLIGEFNVAGEFWHVKPLLEKLGIRV-LATITGDSRYAEVQT-A 242 (456)
T ss_pred hHHHHHHHHHHHHHHhccCCcccccccCCCCcE---EEEcCCCCcccHHHHHHHHHHcCCeE-EEEeCCCCcHHHHHh-c
Confidence 3566777777665443211000 011233 3445322 222368899999999986 5566652 355554 3
Q ss_pred HHcCEEEEccCCCCCCccHHHHHHH--HhCCcEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 003758 190 LMADIVLYGSSQVEQGFPSLIVRAM--TFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNGK 261 (797)
Q Consensus 190 ~aADV~V~PS~~Ee~GFPlvLLEAM--A~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedpe 261 (797)
..|.+-|..+. ..+..+.+.| .+|+|.+....-| ..+.+++.+.|.+++..++
T Consensus 243 ~~A~lniv~~~----~~~~~~a~~L~e~~GiP~~~~~~~G---------------~~~T~~~L~~Ia~~lg~~~ 297 (456)
T TIGR01283 243 HRAKLNMVQCS----KSMINLARKMEEKYGIPYFEGSFYG---------------IEDTSKALRDIADLFGDEE 297 (456)
T ss_pred ccCcEEEEECH----hHHHHHHHHHHHHcCCCEEecCCCc---------------HHHHHHHHHHHHHHhCChH
Confidence 34444443222 2235678888 5799998532111 2356777888888776543
No 209
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=36.69 E-value=3.3e+02 Score=29.47 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=32.4
Q ss_pred CEEEEccCCCCCCccHHHHHHHHhCCcEEEc-CCCChhHhhhcCCeEEEEcCCC
Q 003758 193 DIVLYGSSQVEQGFPSLIVRAMTFGIPVITP-DFPIIKEYVAEGAQVIFFQKDN 245 (797)
Q Consensus 193 DV~V~PS~~Ee~GFPlvLLEAMA~G~PVIas-d~gGi~EiI~Dg~nG~Lfd~~D 245 (797)
|++|.....|+ -.+++||.-+++|+|+- |.-..++++ -+-+|.+|
T Consensus 175 D~vvvln~~e~---~sAilEA~K~~IPTIgIVDtN~~P~li-----TYpVPaND 220 (251)
T KOG0832|consen 175 DLVVVLNPEEN---HSAILEAAKMAIPTIGIVDTNCNPELI-----TYPVPAND 220 (251)
T ss_pred ceeEecCcccc---cHHHHHHHHhCCCeEEEecCCCCccce-----eeccCCCC
Confidence 88887766653 57899999999999974 555566666 34466555
No 210
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=35.78 E-value=94 Score=32.01 Aligned_cols=75 Identities=13% Similarity=0.254 Sum_probs=50.0
Q ss_pred hHHHHHHHcCEEEE----ccCCCCCCccHHHHHHHHhCCcEEEcCC-----CChhHhhhcCCeEEE-EcCCCHHHHHHHH
Q 003758 184 DVNGVLLMADIVLY----GSSQVEQGFPSLIVRAMTFGIPVITPDF-----PIIKEYVAEGAQVIF-FQKDNPEGLSRAF 253 (797)
Q Consensus 184 dl~~~L~aADV~V~----PS~~Ee~GFPlvLLEAMA~G~PVIasd~-----gGi~EiI~Dg~nG~L-fd~~D~eeLAeaI 253 (797)
-+...+..||++|. |--.--..|.-.+-|+|-+++|+|++=+ +.+.+ +.....-++ +++.|-+.+...|
T Consensus 93 al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~-ik~~~~v~v~lt~~NR~~i~~~I 171 (179)
T COG1618 93 ALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQR-IKKLGGVYVFLTPENRNRILNEI 171 (179)
T ss_pred HHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHH-hhhcCCEEEEEccchhhHHHHHH
Confidence 35667778999987 2211111477788899999999998643 33444 444433444 6788888888888
Q ss_pred HHHHhC
Q 003758 254 SLFISN 259 (797)
Q Consensus 254 ~~LLed 259 (797)
..+|..
T Consensus 172 l~~L~~ 177 (179)
T COG1618 172 LSVLKG 177 (179)
T ss_pred HHHhcc
Confidence 887764
No 211
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=34.51 E-value=88 Score=29.16 Aligned_cols=77 Identities=17% Similarity=0.240 Sum_probs=46.6
Q ss_pred EEEEEEeCCCCC--CHHHHHHHHHHcCCCCCeEEEec-ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEE
Q 003758 146 KFVFLCGNSTDG--YNDALQEVASRLGLLEHSVRHYG-FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVIT 222 (797)
Q Consensus 146 kfLIIvG~g~~~--Y~e~Leela~elgL~d~~V~flG-~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIa 222 (797)
+++++||.|-.. -.+.+++.+++.|++ +.+.. +..++...+..+|+++...-.- .-+.-.--.+-..|+||..
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~---~~i~a~~~~e~~~~~~~~Dvill~PQv~-~~~~~i~~~~~~~~ipv~~ 77 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP---LEAAAGAYGSHYDMIPDYDLVILAPQMA-SYYDELKKDTDRLGIKLVT 77 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc---EEEEEeeHHHHHHhccCCCEEEEcChHH-HHHHHHHHHhhhcCCCEEE
Confidence 346788877432 135566777777885 44444 5667888999999988853221 0122222223455889988
Q ss_pred cCCC
Q 003758 223 PDFP 226 (797)
Q Consensus 223 sd~g 226 (797)
.+..
T Consensus 78 I~~~ 81 (99)
T cd05565 78 TTGK 81 (99)
T ss_pred eCHH
Confidence 7744
No 212
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=33.78 E-value=4.7e+02 Score=25.64 Aligned_cols=105 Identities=12% Similarity=0.068 Sum_probs=60.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHH--cCEEEEccCCCCCCccHHHHHHHH---hCCcEEEc
Q 003758 149 FLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT---FGIPVITP 223 (797)
Q Consensus 149 IIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~a--ADV~V~PS~~Ee~GFPlvLLEAMA---~G~PVIas 223 (797)
+++.+.+. ....+.......+. .+.......+....+.. .|++++-..... .-|..++..+. ...|||..
T Consensus 4 livdd~~~-~~~~l~~~L~~~~~---~v~~~~~~~~~~~~~~~~~~d~illd~~~~~-~~g~~~~~~l~~~~~~~pii~l 78 (222)
T PRK10643 4 LIVEDDTL-LLQGLILALQTEGY---ACDCASTAREAEALLESGHYSLVVLDLGLPD-EDGLHLLRRWRQKKYTLPVLIL 78 (222)
T ss_pred EEEeCCHH-HHHHHHHHHHHCCC---EEEEeCCHHHHHHHHHhCCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCcEEEE
Confidence 44544332 12445555554443 35555554455444443 577777433321 34566666655 35787754
Q ss_pred C-CC---ChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHh
Q 003758 224 D-FP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 258 (797)
Q Consensus 224 d-~g---Gi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLe 258 (797)
. .. ...+.+..|..+++..+.+.+++..++..++.
T Consensus 79 s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 79 TARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred ECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 3 22 23344567788999999999988888876653
No 213
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=31.91 E-value=2.1e+02 Score=26.86 Aligned_cols=68 Identities=3% Similarity=0.170 Sum_probs=47.7
Q ss_pred CCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHH
Q 003758 143 GSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMT 215 (797)
Q Consensus 143 pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA 215 (797)
..+++++++.+.+......+...++..+++ .+.+ +..+++...+....+.+..-... ||.-.+++.+-
T Consensus 32 gk~~lVI~A~D~s~~~kkki~~~~~~~~vp--~~~~-~t~~eLg~a~Gk~~~~~iai~d~--g~a~~l~~~~~ 99 (104)
T PRK05583 32 KKVYLIIISNDISENSKNKFKNYCNKYNIP--YIEG-YSKEELGNAIGRDEIKILGVKDK--NMAKKLLKLWN 99 (104)
T ss_pred CCceEEEEeCCCCHhHHHHHHHHHHHcCCC--EEEe-cCHHHHHHHhCCCCeEEEEEeCh--HHHHHHHHHHH
Confidence 357777778787776667777777776775 3444 78889999999876666544444 78887777653
No 214
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=30.98 E-value=5.2e+02 Score=25.32 Aligned_cols=106 Identities=12% Similarity=0.097 Sum_probs=63.0
Q ss_pred EEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHH--HcCEEEEccCCCCCCccHHHHHHHHh-----CCcE
Q 003758 148 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTF-----GIPV 220 (797)
Q Consensus 148 LIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~--aADV~V~PS~~Ee~GFPlvLLEAMA~-----G~PV 220 (797)
++++.+.+. ....+.......+. .|.......+....+. ..|++++-..... .-|..+++.+.. .+||
T Consensus 5 ilivdd~~~-~~~~l~~~L~~~~~---~v~~~~~~~~~~~~~~~~~~d~vi~d~~~~~-~~g~~~~~~l~~~~~~~~~~i 79 (226)
T TIGR02154 5 ILVVEDEPA-IRELIAYNLEKAGY---DVVEAGDGDEALTLINERGPDLILLDWMLPG-TSGIELCRRLRRRPETRAIPI 79 (226)
T ss_pred EEEEeCCHH-HHHHHHHHHHHCCC---EEEEEcCHHHHHHHHHhcCCCEEEEECCCCC-CcHHHHHHHHHccccCCCCCE
Confidence 355554433 23445555554443 3444444445544454 3688887544431 446677777753 4777
Q ss_pred EEc-CCC---ChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHh
Q 003758 221 ITP-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 258 (797)
Q Consensus 221 Ias-d~g---Gi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLe 258 (797)
|.- ... ...+.+..|..|++..+.+.++|..++..++.
T Consensus 80 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 121 (226)
T TIGR02154 80 IMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLR 121 (226)
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhc
Confidence 753 322 23445667888999999999999888877764
No 215
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=29.79 E-value=6.4e+02 Score=25.99 Aligned_cols=76 Identities=11% Similarity=0.058 Sum_probs=48.4
Q ss_pred ChhhHHHHHH----HcCEEEEccCCCCCCccHHHHHHHHh---CCcEEEc-CCC---ChhHhhhcCCeEEEEcCCCHHHH
Q 003758 181 FNGDVNGVLL----MADIVLYGSSQVEQGFPSLIVRAMTF---GIPVITP-DFP---IIKEYVAEGAQVIFFQKDNPEGL 249 (797)
Q Consensus 181 ~~edl~~~L~----aADV~V~PS~~Ee~GFPlvLLEAMA~---G~PVIas-d~g---Gi~EiI~Dg~nG~Lfd~~D~eeL 249 (797)
...+....+. ..|++++-..... .-|..+++.+.- ++|||.- ... ...+.+..|..|++..+.++++|
T Consensus 35 ~~~~a~~~~~~~~~~~DlvilD~~~p~-~~G~eli~~l~~~~~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l 113 (239)
T PRK10430 35 TLEQAKEIIFNSDTPIDLILLDIYMQQ-ENGLDLLPVLHEAGCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRF 113 (239)
T ss_pred CHHHHHHHHHhcCCCCCEEEEecCCCC-CCcHHHHHHHHhhCCCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHH
Confidence 4444444443 3688887433321 346666776653 5676643 332 34456677888999999999999
Q ss_pred HHHHHHHH
Q 003758 250 SRAFSLFI 257 (797)
Q Consensus 250 AeaI~~LL 257 (797)
.++|..++
T Consensus 114 ~~~i~~~~ 121 (239)
T PRK10430 114 EEALTGWR 121 (239)
T ss_pred HHHHHHHH
Confidence 99998765
No 216
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=29.62 E-value=8.3e+02 Score=29.03 Aligned_cols=59 Identities=20% Similarity=0.156 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCCCCeEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHH--HhCCcEEEc
Q 003758 159 NDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAM--TFGIPVITP 223 (797)
Q Consensus 159 ~e~Leela~elgL~d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAM--A~G~PVIas 223 (797)
...++.+.+.+|+.. ++.+.+ ..+++.. +..|++-|.++.. +|..+.+.| .+|+|.+..
T Consensus 177 ~~elkrlL~~lGi~v-n~v~p~g~s~~dl~~-l~~A~~NIv~~~~----~g~~~A~~Le~~fGiP~i~~ 239 (511)
T TIGR01278 177 LIELRRLLKTLGIEV-NVVAPWGASIADLAR-LPAAWLNICPYRE----IGLMAAEYLKEKFGQPYITT 239 (511)
T ss_pred HHHHHHHHHHCCCeE-EEEeCCCCCHHHHHh-cccCcEEEEechH----HHHHHHHHHHHHhCCCcccc
Confidence 478889999999986 666655 4566666 4667776665532 356667777 689998753
No 217
>PRK09581 pleD response regulator PleD; Reviewed
Probab=29.16 E-value=6.1e+02 Score=28.20 Aligned_cols=107 Identities=12% Similarity=0.006 Sum_probs=66.2
Q ss_pred EEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHH--cCEEEEccCCCCCCccHHHHHHHHh-----CCcE
Q 003758 148 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF-----GIPV 220 (797)
Q Consensus 148 LIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~a--ADV~V~PS~~Ee~GFPlvLLEAMA~-----G~PV 220 (797)
++++.+.+.. ...+.......+. .|.......+....+.. .|++++-..... .-|..+++.+.. .+||
T Consensus 5 ilii~~~~~~-~~~l~~~l~~~~~---~v~~~~~~~~~~~~~~~~~~dlvi~d~~~~~-~~g~~l~~~i~~~~~~~~~~i 79 (457)
T PRK09581 5 ILVVDDIPAN-VKLLEAKLLAEYY---TVLTASSGAEAIAICEREQPDIILLDVMMPG-MDGFEVCRRLKSDPATTHIPV 79 (457)
T ss_pred EEEEeCCHHH-HHHHHHHHHhCCC---EEEEeCCHHHHHHHHhhcCCCEEEEeCCCCC-CCHHHHHHHHHcCcccCCCCE
Confidence 3555554332 2444444544333 35545555555555554 577777544431 457778888764 5787
Q ss_pred EEcCC-C---ChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhC
Q 003758 221 ITPDF-P---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISN 259 (797)
Q Consensus 221 Iasd~-g---Gi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLed 259 (797)
|+-.. + ...+.+..|..+++..|.+.++|..++..++..
T Consensus 80 i~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (457)
T PRK09581 80 VMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRL 122 (457)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 75533 2 234556678889999999999999999887753
No 218
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=29.05 E-value=6.1e+02 Score=25.52 Aligned_cols=109 Identities=14% Similarity=0.102 Sum_probs=65.1
Q ss_pred CcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHH--cCEEEEccCCCCCCccHHHHHHHH---hCC
Q 003758 144 SFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT---FGI 218 (797)
Q Consensus 144 dvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~a--ADV~V~PS~~Ee~GFPlvLLEAMA---~G~ 218 (797)
..+ ++++.+.+.. ...+.......|. .+.......+....+.. .|++++-..... .-|..++..+. ..+
T Consensus 5 ~~~-iLiv~d~~~~-~~~l~~~L~~~g~---~v~~~~~~~~~~~~~~~~~~dlvild~~l~~-~~g~~~~~~lr~~~~~~ 78 (239)
T PRK09468 5 NYK-ILVVDDDMRL-RALLERYLTEQGF---QVRSAANAEQMDRLLTRESFHLMVLDLMLPG-EDGLSICRRLRSQNNPT 78 (239)
T ss_pred CCe-EEEEcCCHHH-HHHHHHHHHHCCC---EEEEECCHHHHHHHHhcCCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCC
Confidence 345 4566554431 3455555555554 35555555555555543 688887543331 45666777665 357
Q ss_pred cEEEcCCCC----hhHhhhcCCeEEEEcCCCHHHHHHHHHHHHh
Q 003758 219 PVITPDFPI----IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 258 (797)
Q Consensus 219 PVIasd~gG----i~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLe 258 (797)
|||.-.... ....+..|..+++..|-+.++|...+..++.
T Consensus 79 pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~ 122 (239)
T PRK09468 79 PIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLR 122 (239)
T ss_pred CEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 877643322 2334556777899999999999888877764
No 219
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=29.05 E-value=44 Score=42.15 Aligned_cols=33 Identities=36% Similarity=0.568 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhccccccc
Q 003758 761 EREREERYRQKMDKKRKMKEKMFDRLTKGYRQKT 794 (797)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (797)
.||||.|.|++.+|..+.+| |-+|||-++.-|+
T Consensus 718 ~rErelrERE~Rere~reRe-LrdRlK~gfe~kp 750 (982)
T PF03154_consen 718 ARERELREREIRERELRERE-LRDRLKPGFEVKP 750 (982)
T ss_pred hhhhhhhhhhhhhHHHHHHH-HHHhhccccccCC
Confidence 46888888888877777776 5599999988775
No 220
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=27.63 E-value=9.5e+02 Score=27.62 Aligned_cols=119 Identities=17% Similarity=0.148 Sum_probs=64.5
Q ss_pred cccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCC-CHHHHHHHHHHcCCCCCeEEEe-----------------
Q 003758 118 SWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDG-YNDALQEVASRLGLLEHSVRHY----------------- 179 (797)
Q Consensus 118 ~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~-Y~e~Leela~elgL~d~~V~fl----------------- 179 (797)
..+++.+++++-..+..-.. ......+. +|.|..... ....++++.++.|++. ++.+.
T Consensus 132 ~~G~~~a~~al~~~~~~~~~-~~~~~~VN--lig~~~~~~~d~~el~~lL~~~Gl~v-~~~~~~s~~~d~~~~~~~~~~~ 207 (428)
T cd01965 132 ETGYDNAVKAIIEQLAKPSE-VKKNGKVN--LLPGFPLTPGDVREIKRILEAFGLEP-IILPDLSDSLDGHLTDGYSPLT 207 (428)
T ss_pred HHHHHHHHHHHHHHHhcccC-CCCCCeEE--EECCCCCCccCHHHHHHHHHHcCCCE-EEecCcccccCCCCCCCccccC
Confidence 35667666666543221110 01122233 343432211 2488999999999986 44442
Q ss_pred -c--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHH--hCCcEEEcCCC-ChhHhhhcCCeEEEEcCCCHHHHHHHH
Q 003758 180 -G--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMT--FGIPVITPDFP-IIKEYVAEGAQVIFFQKDNPEGLSRAF 253 (797)
Q Consensus 180 -G--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA--~G~PVIasd~g-Gi~EiI~Dg~nG~Lfd~~D~eeLAeaI 253 (797)
| ..+++.. +..|.+-|..+. -++..+.++|. +|+|-+....+ |+ ...+++.++|
T Consensus 208 ~gg~~~e~i~~-~~~A~lniv~~~----~~~~~~a~~L~e~~GiP~~~~~~p~G~---------------~~t~~~l~~l 267 (428)
T cd01965 208 KGGTTLEEIRD-AGNAKATIALGE----YSGRKAAKALEEKFGVPYILFPTPIGL---------------KATDEFLRAL 267 (428)
T ss_pred CCCCcHHHHHH-hccCcEEEEECh----hhhHHHHHHHHHHHCCCeeecCCCcCh---------------HHHHHHHHHH
Confidence 2 2344444 334444444332 14567777776 89999877543 22 3466777788
Q ss_pred HHHHhCc
Q 003758 254 SLFISNG 260 (797)
Q Consensus 254 ~~LLedp 260 (797)
.+++..+
T Consensus 268 ~~~~g~~ 274 (428)
T cd01965 268 SKLSGKP 274 (428)
T ss_pred HHHHCCC
Confidence 7777544
No 221
>PRK13435 response regulator; Provisional
Probab=27.59 E-value=5e+02 Score=24.07 Aligned_cols=111 Identities=16% Similarity=0.129 Sum_probs=60.2
Q ss_pred CcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHH--cCEEEEccCCCCCCccHHHHHHHHh--CCc
Q 003758 144 SFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF--GIP 219 (797)
Q Consensus 144 dvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~a--ADV~V~PS~~Ee~GFPlvLLEAMA~--G~P 219 (797)
..+ ++++.+.+.. ...+....+..+.. .+......++....+.. .|++|+-.......-+..+++-+.. .+|
T Consensus 5 ~~~-iliid~~~~~-~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~dliivd~~~~~~~~~~~~~~~l~~~~~~p 80 (145)
T PRK13435 5 QLK-VLIVEDEALI-ALELEKLVEEAGHE--VVGIAMSSEQAIALGRRRQPDVALVDVHLADGPTGVEVARRLSADGGVE 80 (145)
T ss_pred cce-EEEEcCcHHH-HHHHHHHHHhcCCe--EEEeeCCHHHHHHHhhhcCCCEEEEeeecCCCCcHHHHHHHHHhCCCCC
Confidence 345 3555554332 24455555554543 22234444454444433 6888774322100224555555432 678
Q ss_pred EEEcC-CCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHh
Q 003758 220 VITPD-FPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 258 (797)
Q Consensus 220 VIasd-~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLe 258 (797)
+|.-. .......+..|..+++..+-+.+.|.+.|..++.
T Consensus 81 ii~ls~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 120 (145)
T PRK13435 81 VVFMTGNPERVPHDFAGALGVIAKPYSPRGVARALSYLSA 120 (145)
T ss_pred EEEEeCCHHHHHHHhcCcceeEeCCCCHHHHHHHHHHHHh
Confidence 77543 2222334456777899999999999888877764
No 222
>PRK07714 hypothetical protein; Provisional
Probab=27.32 E-value=3e+02 Score=25.38 Aligned_cols=66 Identities=12% Similarity=0.181 Sum_probs=42.8
Q ss_pred CCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHH
Q 003758 143 GSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRA 213 (797)
Q Consensus 143 pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEA 213 (797)
..+++++++.+.+....+.+...+...+++ +.+.+..+++...+......+..-... ||.-.+++.
T Consensus 33 g~~~lViiA~D~s~~~~~ki~~~~~~~~vp---~~~~~sk~eLG~a~Gk~~~~~vai~d~--g~a~~l~~~ 98 (100)
T PRK07714 33 GKAKLVLLSEDASVNTTKKITDKCTYYNVP---MRKVENRQQLGHAIGKDERVVVAVLDE--GFAKKLRSM 98 (100)
T ss_pred CCceEEEEeCCCCHHHHHHHHHHHHhcCCC---EEEeCCHHHHHHHhCCCcceEEEEeCc--hhHHHHHHH
Confidence 346767777777765566777777766665 455678888998888765444322222 676666654
No 223
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=26.23 E-value=3.7e+02 Score=29.54 Aligned_cols=90 Identities=18% Similarity=0.094 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCC
Q 003758 122 AVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQ 201 (797)
Q Consensus 122 ~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~ 201 (797)
.-+++++..|...... ..+-+.++++.-+.++- .-.+.+-++++|+.-.+..|.|.. .+..|+.+-.+-++.|..
T Consensus 17 Fp~vk~Ll~lN~~~~~---e~~~VEVVllSRNspdT-GlRv~nSI~hygL~ItR~~ft~G~-~~~~Yl~af~v~LFLSan 91 (264)
T PF06189_consen 17 FPFVKALLALNDLLPE---EDPLVEVVLLSRNSPDT-GLRVFNSIRHYGLDITRAAFTGGE-SPYPYLKAFNVDLFLSAN 91 (264)
T ss_pred hHHHHHHHHhhccccc---cCCceEEEEEecCCHHH-HHHHHHhHHHhCCcceeeeecCCC-CHHHHHHHhCCceEeeCC
Confidence 4567777666443321 23567754444444432 235567788999986567777643 567799998888887765
Q ss_pred CCCCccHHHHHHHHhCCcEE
Q 003758 202 VEQGFPSLIVRAMTFGIPVI 221 (797)
Q Consensus 202 Ee~GFPlvLLEAMA~G~PVI 221 (797)
+ --+.+|+..|.|--
T Consensus 92 ~-----~DV~~Ai~~G~~Aa 106 (264)
T PF06189_consen 92 E-----DDVQEAIDAGIPAA 106 (264)
T ss_pred H-----HHHHHHHHcCCCcE
Confidence 5 78999999999944
No 224
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=26.02 E-value=9.6e+02 Score=27.67 Aligned_cols=82 Identities=18% Similarity=0.151 Sum_probs=45.9
Q ss_pred CcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecC------------------hhhHHHHHHHcCEEEEccCCCCCC
Q 003758 144 SFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGF------------------NGDVNGVLLMADIVLYGSSQVEQG 205 (797)
Q Consensus 144 dvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~------------------~edl~~~L~aADV~V~PS~~Ee~G 205 (797)
+-+ ++|+|.|.-. ..+.......|.. .|...+. .+++.+.+..+|++|..+...+.-
T Consensus 180 ~~~-VlViGaG~iG--~~~a~~L~~~G~~--~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~~i 254 (417)
T TIGR01035 180 GKK-ALLIGAGEMG--ELVAKHLLRKGVG--KILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPHPI 254 (417)
T ss_pred CCE-EEEECChHHH--HHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCCce
Confidence 345 5777887765 4444444445654 3555541 123556778999999865443212
Q ss_pred ccHHHHHHHHhC--CcEEEcCCCChhH
Q 003758 206 FPSLIVRAMTFG--IPVITPDFPIIKE 230 (797)
Q Consensus 206 FPlvLLEAMA~G--~PVIasd~gGi~E 230 (797)
+....++++..+ .|.+..|.+..++
T Consensus 255 i~~e~l~~~~~~~~~~~~viDla~Prd 281 (417)
T TIGR01035 255 VSKEDVERALRERTRPLFIIDIAVPRD 281 (417)
T ss_pred EcHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 333445555443 5777777664333
No 225
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=25.83 E-value=1.1e+03 Score=27.35 Aligned_cols=122 Identities=12% Similarity=0.084 Sum_probs=62.8
Q ss_pred ccccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCC-CHHHHHHHHHHcCCCCCeEE-----------------E
Q 003758 117 LSWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDG-YNDALQEVASRLGLLEHSVR-----------------H 178 (797)
Q Consensus 117 l~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~-Y~e~Leela~elgL~d~~V~-----------------f 178 (797)
...+++.+++++-..+..-.........+. +|.|..+.. ....++++.++.|+.. ++. +
T Consensus 135 ~~~G~~~a~~al~~~l~~~~~~~~~~~~VN--li~~~~~~~d~~~el~~lL~~~Gl~~-~~~~d~s~~~d~~~~~~~~~~ 211 (435)
T cd01974 135 HITGYDNMVKGILTHLTEGSGGAGKNGKLN--IIPGFDTYAGNMREIKRLLELMGVDY-TILPDTSDVLDTPADGEYRMY 211 (435)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCCeEE--EECCCCCCcchHHHHHHHHHHcCCCE-EEecccccccCCCCCCCcccc
Confidence 335677777776543221110001222333 333333221 1478999999999985 321 1
Q ss_pred ec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHH--hCCcEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHH
Q 003758 179 YG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMT--FGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFS 254 (797)
Q Consensus 179 lG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA--~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~ 254 (797)
.| ..+++.. +..|.+-|..+.. .+..+.+.|. +|+|.+....+ +-..+.+++.+.|.
T Consensus 212 ~gg~~~~~i~~-~~~A~~niv~~~~----~~~~~a~~Le~~~giP~~~~~~p--------------~G~~~t~~~l~~l~ 272 (435)
T cd01974 212 PGGTTLEELKD-AGNAKATLALQEY----ATEKTAKFLEKKCKVPVETLNMP--------------IGVAATDEFLMALS 272 (435)
T ss_pred CCCCCHHHHHh-hccCcEEEEECcc----ccHHHHHHHHHHhCCCeeecCCC--------------cChHHHHHHHHHHH
Confidence 12 2344444 3333333332322 2456677765 89998877533 11235667778887
Q ss_pred HHHhCc
Q 003758 255 LFISNG 260 (797)
Q Consensus 255 ~LLedp 260 (797)
+++..+
T Consensus 273 ~~~g~~ 278 (435)
T cd01974 273 ELTGKP 278 (435)
T ss_pred HHhCCC
Confidence 777644
No 226
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=25.54 E-value=2.8e+02 Score=29.91 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHcCCCCCeEEEec--C-----hhhHHHHHHHcCEEEEcc--------CCCCCCccHHHHHHHHhCCcEEE
Q 003758 158 YNDALQEVASRLGLLEHSVRHYG--F-----NGDVNGVLLMADIVLYGS--------SQVEQGFPSLIVRAMTFGIPVIT 222 (797)
Q Consensus 158 Y~e~Leela~elgL~d~~V~flG--~-----~edl~~~L~aADV~V~PS--------~~Ee~GFPlvLLEAMA~G~PVIa 222 (797)
|.+.+.+..+++|... |..+. . .+++.+.+..||++++.. .+.+-+.--.+.++...|+|++.
T Consensus 44 ~~~~~~~~~~~lG~~~--v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G 121 (250)
T TIGR02069 44 VGERYITIFSRLGVKE--VKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGG 121 (250)
T ss_pred HHHHHHHHHHHcCCce--eEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEE
Confidence 4455666667788863 44443 1 245778899999988842 22211233456688889999998
Q ss_pred cCCCCh
Q 003758 223 PDFPII 228 (797)
Q Consensus 223 sd~gGi 228 (797)
+..|.+
T Consensus 122 ~SAGA~ 127 (250)
T TIGR02069 122 TSAGAA 127 (250)
T ss_pred ccHHHH
Confidence 887743
No 227
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=25.39 E-value=8.6e+02 Score=28.07 Aligned_cols=82 Identities=16% Similarity=0.200 Sum_probs=45.4
Q ss_pred CcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecCh------------------hhHHHHHHHcCEEEEccCCCCCC
Q 003758 144 SFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFN------------------GDVNGVLLMADIVLYGSSQVEQG 205 (797)
Q Consensus 144 dvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~------------------edl~~~L~aADV~V~PS~~Ee~G 205 (797)
.-+ ++|+|.|+-. ..+...+...|.. .|.+.+.. +++...+..+|++|..+...+.-
T Consensus 182 ~~~-vlViGaG~iG--~~~a~~L~~~G~~--~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~~ 256 (423)
T PRK00045 182 GKK-VLVIGAGEMG--ELVAKHLAEKGVR--KITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHPI 256 (423)
T ss_pred CCE-EEEECchHHH--HHHHHHHHHCCCC--eEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCcE
Confidence 345 4777887765 4444445555654 35555511 23345667889999876443211
Q ss_pred ccHHHHHHHHh---CCcEEEcCCCChhH
Q 003758 206 FPSLIVRAMTF---GIPVITPDFPIIKE 230 (797)
Q Consensus 206 FPlvLLEAMA~---G~PVIasd~gGi~E 230 (797)
+....++.+.. +.|.+..|.+.-++
T Consensus 257 i~~~~l~~~~~~~~~~~~vviDla~Prd 284 (423)
T PRK00045 257 IGKGMVERALKARRHRPLLLVDLAVPRD 284 (423)
T ss_pred EcHHHHHHHHhhccCCCeEEEEeCCCCC
Confidence 22333444432 46788878775444
No 228
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=25.37 E-value=4.4e+02 Score=27.68 Aligned_cols=101 Identities=13% Similarity=0.149 Sum_probs=54.1
Q ss_pred EEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEec-Chhh-HHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEc-C
Q 003758 148 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG-FNGD-VNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITP-D 224 (797)
Q Consensus 148 LIIvG~g~~~Y~e~Leela~elgL~d~~V~flG-~~ed-l~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIas-d 224 (797)
++++|..+.. ...+++.+...|-.--.=+|+| .-.+ ...-+..=|++++....+ =...+.||...|+|||+- |
T Consensus 64 ILfVgtk~~~-~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~~---~~~Av~EA~~l~IP~Iai~D 139 (196)
T TIGR01012 64 ILVVSARIYG-QKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPRA---DHQALKEASEVGIPIVALCD 139 (196)
T ss_pred EEEEecCHHH-HHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEECCcc---ccHHHHHHHHcCCCEEEEee
Confidence 4677766543 4566666766654321125666 1111 112244556666533222 258899999999999984 4
Q ss_pred CCChhHhhhcCCeEEEEcCCC-HHHHHHHHHHHH
Q 003758 225 FPIIKEYVAEGAQVIFFQKDN-PEGLSRAFSLFI 257 (797)
Q Consensus 225 ~gGi~EiI~Dg~nG~Lfd~~D-~eeLAeaI~~LL 257 (797)
...-+..| -+.+|.+| .-.-...+..++
T Consensus 140 Tn~dp~~v-----dypIP~Ndds~~Si~li~~ll 168 (196)
T TIGR01012 140 TDNPLRYV-----DLVIPTNNKGRHSLALIYWLL 168 (196)
T ss_pred CCCCCccC-----CEEECCCCchHHHHHHHHHHH
Confidence 44455544 34566554 333333333333
No 229
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=25.32 E-value=3.9e+02 Score=25.72 Aligned_cols=79 Identities=10% Similarity=0.014 Sum_probs=51.6
Q ss_pred ccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCCCCC-CHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHc-CEEE
Q 003758 119 WDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNSTDG-YNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMA-DIVL 196 (797)
Q Consensus 119 Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g~~~-Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aA-DV~V 196 (797)
.|....++++. ...+++++++++.... +...+..++++.+++ +.+.+..+++...+... .+.+
T Consensus 33 ~G~~~v~kaik------------kgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp---~~~~~tk~eLG~a~Gk~~~~sv 97 (122)
T PRK04175 33 KGTNETTKAVE------------RGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIP---YVYVPSKKDLGKAAGLEVGAAA 97 (122)
T ss_pred EcHHHHHHHHH------------cCCccEEEEeCCCChHHHHHHHHHHHHHcCCC---EEEECCHHHHHHHhCCCCCeEE
Confidence 34466666663 2456766777776543 346788888888886 78888888999998876 3444
Q ss_pred EccCCCCCCccHHHHHHH
Q 003758 197 YGSSQVEQGFPSLIVRAM 214 (797)
Q Consensus 197 ~PS~~Ee~GFPlvLLEAM 214 (797)
..-... ||.-.++..|
T Consensus 98 vaI~d~--g~a~~~~~~~ 113 (122)
T PRK04175 98 AAIVDA--GKAKELVEDI 113 (122)
T ss_pred EEEech--hhhHHHHHHH
Confidence 333333 6666666554
No 230
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=25.06 E-value=6.9e+02 Score=24.85 Aligned_cols=106 Identities=12% Similarity=0.080 Sum_probs=60.9
Q ss_pred EEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHH--cCEEEEccCCCCCCccHHHHHHHH-----hCCcE
Q 003758 148 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMT-----FGIPV 220 (797)
Q Consensus 148 LIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~a--ADV~V~PS~~Ee~GFPlvLLEAMA-----~G~PV 220 (797)
++++.+.+. ....+.......|. .+.......+....+.. .|++++-..... .-|..++..+. ..+||
T Consensus 5 Ilivdd~~~-~~~~l~~~L~~~g~---~v~~~~~~~~~~~~~~~~~~dlvild~~l~~-~~g~~~~~~l~~~~~~~~~pv 79 (229)
T PRK10161 5 ILVVEDEAP-IREMVCFVLEQNGF---QPVEAEDYDSAVNQLNEPWPDLILLDWMLPG-GSGIQFIKHLKRESMTRDIPV 79 (229)
T ss_pred EEEEcCCHH-HHHHHHHHHHHCCC---EEEEECCHHHHHHHHhccCCCEEEEeCCCCC-CCHHHHHHHHHhccccCCCCE
Confidence 456655432 23445555554444 34444444444444433 578877443321 34566676665 35777
Q ss_pred EEc-CCC---ChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHh
Q 003758 221 ITP-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 258 (797)
Q Consensus 221 Ias-d~g---Gi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLe 258 (797)
|.- +.. ...+.+..|..+++..+.+.++|..+|..++.
T Consensus 80 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 121 (229)
T PRK10161 80 VMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 (229)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 654 333 23445667888999999999888888876653
No 231
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=24.52 E-value=2.4e+02 Score=34.10 Aligned_cols=119 Identities=14% Similarity=0.141 Sum_probs=82.1
Q ss_pred EEEecChhhHHHHHHHcCEE-EEcc-----CCCCCCccHHHHHHHHhC-CcEEEcCCC--ChhHhhhcCCeEEEEcCCCH
Q 003758 176 VRHYGFNGDVNGVLLMADIV-LYGS-----SQVEQGFPSLIVRAMTFG-IPVITPDFP--IIKEYVAEGAQVIFFQKDNP 246 (797)
Q Consensus 176 V~flG~~edl~~~L~aADV~-V~PS-----~~Ee~GFPlvLLEAMA~G-~PVIasd~g--Gi~EiI~Dg~nG~Lfd~~D~ 246 (797)
-...|+.+.-.+++..+-.. |+|- ..+ +|-.-++||+..| +|||..+.- ...+++.=..+.++++..-.
T Consensus 401 walcg~~~~RrqLlk~STF~lilpp~d~rv~S~--~~~~r~~eaL~~GavPviLg~~~~LPyqd~idWrraal~lPkaR~ 478 (907)
T KOG2264|consen 401 WALCGERERRRQLLKSSTFCLILPPGDPRVISE--MFFQRFLEALQLGAVPVILGNSQLLPYQDLIDWRRAALRLPKARL 478 (907)
T ss_pred hhhccchHHHHHHhccceeEEEecCCCcchhhH--HHHHHHHHHHhcCCeeEEeccccccchHHHHHHHHHhhhCCcccc
Confidence 55677777888888887754 4552 122 5666789999999 788888655 67777776666777765444
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhcHHHH--HHHHHHHHHHHhcCCC
Q 003758 247 EGLSRAFSLFISNGKLSKFARTVASAGRLHAKNMLALDC--VTRYARILENVLNFPS 301 (797)
Q Consensus 247 eeLAeaI~~LLedpel~~~r~~m~~~aRk~ak~~~s~e~--i~~Y~kLLe~lL~~ps 301 (797)
.+ +.-|.+.+++.++ -.|...||-+-+.+++... +...+..+..-+..|.
T Consensus 479 tE-~HFllrs~~dsDl----l~mRRqGRl~wEtYls~~~~~~~tvlA~lR~rlqIP~ 530 (907)
T KOG2264|consen 479 TE-AHFLLRSFEDSDL----LEMRRQGRLFWETYLSDRHLLARTVLAALRYRLQIPT 530 (907)
T ss_pred ch-HHHHHHhcchhhH----HHHHhhhhhhHHHHhhHHHHHHHHHHHHHHHhhCCCC
Confidence 33 3556666778775 6778888888888877754 4566666666666663
No 232
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=24.34 E-value=7.1e+02 Score=24.69 Aligned_cols=106 Identities=10% Similarity=0.096 Sum_probs=60.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHH--HcCEEEEccCCCCC-CccHHHHHHHHh---CCcEEE
Q 003758 149 FLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQ-GFPSLIVRAMTF---GIPVIT 222 (797)
Q Consensus 149 IIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~--aADV~V~PS~~Ee~-GFPlvLLEAMA~---G~PVIa 222 (797)
+++.+.+. ....+....+..+. .|.......+....+. ..|++++-...... ..|..+++.+.. .+|||.
T Consensus 4 Livdd~~~-~~~~l~~~L~~~~~---~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ 79 (227)
T TIGR03787 4 AIVEDEAA-IRENYADALKRQGY---QVTTYADRPSAMQAFRQRLPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIF 79 (227)
T ss_pred EEEeCCHH-HHHHHHHHHHHCCc---EEEEecCHHHHHHHHHhCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 44444332 23445555554443 3444444445444443 36788875444310 135666666653 578775
Q ss_pred cC-CC---ChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHh
Q 003758 223 PD-FP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 258 (797)
Q Consensus 223 sd-~g---Gi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLe 258 (797)
-. .. .....+..|..+++..+.+.+++..++..++.
T Consensus 80 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 80 LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFR 119 (227)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 43 22 24455667888999999999999888877654
No 233
>PF11271 DUF3068: Protein of unknown function (DUF3068); InterPro: IPR021424 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=24.03 E-value=39 Score=37.28 Aligned_cols=22 Identities=23% Similarity=0.600 Sum_probs=18.5
Q ss_pred HHHhhhcccceeEEeCCCCCcc
Q 003758 681 VNVWAYHSGRKMVYLDPLSGSL 702 (797)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~ 702 (797)
|.+--||++.|.+||||.||.+
T Consensus 208 v~~~~~y~~~r~lwVeP~TG~i 229 (301)
T PF11271_consen 208 VTMDRYYSATRTLWVEPVTGVI 229 (301)
T ss_pred cEEEEEEeeeEEEEEcCCCCcE
Confidence 3445689999999999999986
No 234
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=23.91 E-value=4.1e+02 Score=30.11 Aligned_cols=77 Identities=16% Similarity=0.177 Sum_probs=47.0
Q ss_pred CCCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEec-C----hhhHHHHHH-----HcC--EEEEccCCCCCCccHH
Q 003758 142 EGSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG-F----NGDVNGVLL-----MAD--IVLYGSSQVEQGFPSL 209 (797)
Q Consensus 142 ~pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG-~----~edl~~~L~-----aAD--V~V~PS~~Ee~GFPlv 209 (797)
+|+.- |+|+|...- ...+++..+.+|.+ -++.-| . .+.+...++ +.+ -+|+.+-++ ++-.
T Consensus 75 npd~V-LIIGGp~AV--s~~yE~~Lks~Git--V~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~GwD---y~~~ 146 (337)
T COG2247 75 NPDLV-LIIGGPIAV--SPNYENALKSLGIT--VKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVYGWD---YADA 146 (337)
T ss_pred CCceE-EEECCCCcC--ChhHHHHHHhCCcE--EEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEeccc---cHHH
Confidence 46665 456555433 37778888888886 355555 2 233555554 444 333334333 3448
Q ss_pred HHHHHHhC-CcEEEcCCC
Q 003758 210 IVRAMTFG-IPVITPDFP 226 (797)
Q Consensus 210 LLEAMA~G-~PVIasd~g 226 (797)
+.|+|--| +||+.++..
T Consensus 147 ~~e~~k~~~~p~~~~n~~ 164 (337)
T COG2247 147 LMELMKEGIVPVILKNTS 164 (337)
T ss_pred HHHHHhcCcceeEecccc
Confidence 99999999 788887765
No 235
>PF08465 Herpes_TK_C: Thymidine kinase from Herpesvirus C-terminal; InterPro: IPR013672 This domain is found towards the C terminus in Herpesvirus Thymidine kinases. ; GO: 0004797 thymidine kinase activity, 0005524 ATP binding
Probab=23.89 E-value=52 Score=24.98 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=18.3
Q ss_pred cCCCCCHHHHHHhhhhhhcccc
Q 003758 405 DGTFASWDDIYRNARKSERFKF 426 (797)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~ 426 (797)
+-..|-|.+||.++.|....|.
T Consensus 4 dDvpGlW~~IY~qi~kn~aIKt 25 (33)
T PF08465_consen 4 DDVPGLWTEIYTQILKNPAIKT 25 (33)
T ss_pred CccccHHHHHHHHHHhCccccc
Confidence 3457999999999999887774
No 236
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=23.37 E-value=1.8e+02 Score=26.66 Aligned_cols=77 Identities=19% Similarity=0.240 Sum_probs=46.9
Q ss_pred cEEEEEEeCCCCC--CHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHH--hCCcE
Q 003758 145 FKFVFLCGNSTDG--YNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMT--FGIPV 220 (797)
Q Consensus 145 vkfLIIvG~g~~~--Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA--~G~PV 220 (797)
.++|++||.|-.. -...+++.+++.|++- .|...+ ..++......+|+++.+... .+-..-++..+ .|+||
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~-~v~a~~-~~~~~~~~~~~Dvill~pqi---~~~~~~i~~~~~~~~ipv 78 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEEYGVPV-KIAAGS-YGAAGEKLDDADVVLLAPQV---AYMLPDLKKETDKKGIPV 78 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCcE-EEEEec-HHHHHhhcCCCCEEEECchH---HHHHHHHHHHhhhcCCCE
Confidence 3567899987543 1345556667777763 344444 44677777889999986433 22233355444 47799
Q ss_pred EEcCCC
Q 003758 221 ITPDFP 226 (797)
Q Consensus 221 Iasd~g 226 (797)
+..+..
T Consensus 79 ~~I~~~ 84 (95)
T TIGR00853 79 EVINGA 84 (95)
T ss_pred EEeChh
Confidence 986654
No 237
>CHL00148 orf27 Ycf27; Reviewed
Probab=23.03 E-value=7.6e+02 Score=24.59 Aligned_cols=110 Identities=12% Similarity=0.070 Sum_probs=63.2
Q ss_pred CCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHH--HcCEEEEccCCCCCCccHHHHHHHHh--CC
Q 003758 143 GSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTF--GI 218 (797)
Q Consensus 143 pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~--aADV~V~PS~~Ee~GFPlvLLEAMA~--G~ 218 (797)
+..+ ++++.+.+.. ...+.......+. .|.......+....+. ..|++++-..... ..|..+++.+.. .+
T Consensus 5 ~~~~-ilivdd~~~~-~~~l~~~l~~~~~---~v~~~~~~~~~l~~~~~~~~d~illd~~~~~-~~g~~~~~~l~~~~~~ 78 (240)
T CHL00148 5 SKEK-ILVVDDEAYI-RKILETRLSIIGY---EVITASDGEEALKLFRKEQPDLVILDVMMPK-LDGYGVCQEIRKESDV 78 (240)
T ss_pred CCce-EEEEeCCHHH-HHHHHHHHHHCCC---EEEEeCCHHHHHHHHHhcCCCEEEEeCCCCC-CCHHHHHHHHHhcCCC
Confidence 3456 4666655432 3445555554443 3544444444444443 3578777433331 345666666543 57
Q ss_pred cEEEc-CCC---ChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHh
Q 003758 219 PVITP-DFP---IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 258 (797)
Q Consensus 219 PVIas-d~g---Gi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLe 258 (797)
|+|.- ... ...+.+..|..+++..+.+.++|..++..++.
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 79 PIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred cEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 77653 222 23455667788999999999998888876653
No 238
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=23.01 E-value=2.8e+02 Score=30.91 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=48.0
Q ss_pred EEEeC-CCCCC---HHHHHHHHHHcCCCCCeEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEE
Q 003758 149 FLCGN-STDGY---NDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVIT 222 (797)
Q Consensus 149 IIvG~-g~~~Y---~e~Leela~elgL~d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIa 222 (797)
+++|. +...| .+.+++++++.|.+- .+..+| +.+.+..+ ..|++|..+.-+ +++...-.+-+|||+
T Consensus 217 IlvgTl~~q~~~~~~~~l~~ll~~~gkk~-y~i~~~~in~~kL~nf--~iD~fV~~aCPr-----~sidd~~~f~kPvlT 288 (308)
T TIGR03682 217 ILVSTKKGQRRPELAEELKKLLEELGKEA-LLILLDNISPDQLRNL--DFDAYVNTACPR-----IAIDDYARFKKPVLT 288 (308)
T ss_pred EEEEccCcCCCHHHHHHHHHHHHHcCCeE-EEEEeCCCCHHHHhcC--CcCEEEEccCCC-----cccccHhhCCCcccC
Confidence 55665 34444 455666778888875 666677 45556555 499999987766 667888889999998
Q ss_pred cC
Q 003758 223 PD 224 (797)
Q Consensus 223 sd 224 (797)
+-
T Consensus 289 P~ 290 (308)
T TIGR03682 289 PQ 290 (308)
T ss_pred HH
Confidence 74
No 239
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=22.56 E-value=7.1e+02 Score=24.11 Aligned_cols=81 Identities=12% Similarity=-0.008 Sum_probs=49.5
Q ss_pred ecChhhHHHHHHH--cCEEEEccCCCCCCccHHHHHHHHh---CCcEEEc-CCC---ChhHhhhcCCeEEEEcCCCHHHH
Q 003758 179 YGFNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVRAMTF---GIPVITP-DFP---IIKEYVAEGAQVIFFQKDNPEGL 249 (797)
Q Consensus 179 lG~~edl~~~L~a--ADV~V~PS~~Ee~GFPlvLLEAMA~---G~PVIas-d~g---Gi~EiI~Dg~nG~Lfd~~D~eeL 249 (797)
.....+....+.. .|++++-..... ..|..++..+.. ..|+|+- ... ...+.+..|..+++..+.++++|
T Consensus 31 ~~~~~~~~~~~~~~~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l 109 (204)
T PRK09958 31 LTEGGSAVQRVETLKPDIVIIDVDIPG-VNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNI 109 (204)
T ss_pred eCCHHHHHHHHHccCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHH
Confidence 3344444333332 577777443321 445666666653 4565543 332 23445666788999999999999
Q ss_pred HHHHHHHHhCc
Q 003758 250 SRAFSLFISNG 260 (797)
Q Consensus 250 AeaI~~LLedp 260 (797)
..++..++...
T Consensus 110 ~~~i~~~~~~~ 120 (204)
T PRK09958 110 IAAIEAAKNGY 120 (204)
T ss_pred HHHHHHHHcCC
Confidence 99999987653
No 240
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=22.47 E-value=7.3e+02 Score=24.22 Aligned_cols=105 Identities=15% Similarity=0.077 Sum_probs=59.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHH--HcCEEEEccCCCCCCccHHHHHHHHh---CCcEEEc
Q 003758 149 FLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMTF---GIPVITP 223 (797)
Q Consensus 149 IIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~--aADV~V~PS~~Ee~GFPlvLLEAMA~---G~PVIas 223 (797)
+++.+.+. ....+.......+. .+.......+....+. ..|++++-..... .-|..+++.+.. ..|+|.-
T Consensus 4 livdd~~~-~~~~l~~~L~~~~~---~v~~~~~~~~~~~~~~~~~~dlvild~~l~~-~~g~~~~~~i~~~~~~~~ii~l 78 (219)
T PRK10336 4 LLIEDDML-IGDGIKTGLSKMGF---SVDWFTQGRQGKEALYSAPYDAVILDLTLPG-MDGRDILREWREKGQREPVLIL 78 (219)
T ss_pred EEEcCCHH-HHHHHHHHHHHCCC---EEEEeCCHHHHHHHHhhCCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCcEEEE
Confidence 45554332 12445554544443 3444444444444333 3588887543331 346666776654 4676654
Q ss_pred C-CCC---hhHhhhcCCeEEEEcCCCHHHHHHHHHHHHh
Q 003758 224 D-FPI---IKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 258 (797)
Q Consensus 224 d-~gG---i~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLe 258 (797)
. ... ..+.+..|..+++..+.+.++|..++..++.
T Consensus 79 t~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 79 TARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred ECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 3 322 2345667888999999999999888877654
No 241
>PRK10494 hypothetical protein; Provisional
Probab=22.44 E-value=4.1e+02 Score=28.80 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=53.9
Q ss_pred cCCCCcEEEEEEeC-CCCC-C--HHHHHHHHHHcCCCCCeEEEec-C---hhh---HHHHHHHcCEEEEccCCCCCCccH
Q 003758 140 SVEGSFKFVFLCGN-STDG-Y--NDALQEVASRLGLLEHSVRHYG-F---NGD---VNGVLLMADIVLYGSSQVEQGFPS 208 (797)
Q Consensus 140 ~~~pdvkfLIIvG~-g~~~-Y--~e~Leela~elgL~d~~V~flG-~---~ed---l~~~L~aADV~V~PS~~Ee~GFPl 208 (797)
+.++..+ +++.|. +... . -+...+.+.++|++..+|...+ + .++ ..+++....+++++|-+ ..+.
T Consensus 117 r~~~~~~-ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~~~~~~~~~~iiLVTsa~---Hm~R 192 (259)
T PRK10494 117 RANPGAK-LIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLDLPKDTEEEAAAVKQAIGDAPFLLVTSAS---HLPR 192 (259)
T ss_pred HhCCCCE-EEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCCCCCCHHHHHHHHHHHhCCCCEEEECCHH---HHHH
Confidence 3456777 466664 3221 1 2444667788899875566655 1 122 44556555688888866 6788
Q ss_pred HHHHHHHhCCcEEEcCCC
Q 003758 209 LIVRAMTFGIPVITPDFP 226 (797)
Q Consensus 209 vLLEAMA~G~PVIasd~g 226 (797)
++..+=..|+.||....+
T Consensus 193 A~~~f~~~Gl~v~p~Ptd 210 (259)
T PRK10494 193 AMIFFQQEGLNPLPAPAN 210 (259)
T ss_pred HHHHHHHcCCceeecCCc
Confidence 888888999999976665
No 242
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=22.38 E-value=1.4e+03 Score=27.33 Aligned_cols=80 Identities=15% Similarity=0.084 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCCCCeEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHH--hCCcEEEcCCCChhHhhhc
Q 003758 159 NDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMT--FGIPVITPDFPIIKEYVAE 234 (797)
Q Consensus 159 ~e~Leela~elgL~d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA--~G~PVIasd~gGi~EiI~D 234 (797)
...++.+.+.+|+.. ++.+.+ ..+++.. +..|++-|..+.. ++..+.+.|. +|+|.+....-|+
T Consensus 177 ~~EikrlL~~~Gi~v-n~v~p~g~s~~di~~-l~~A~~nivl~~~----~g~~~A~~Lee~fGiP~i~~~PiG~------ 244 (519)
T PRK02910 177 LTELRRLLATLGIDV-NVVAPLGASPADLKR-LPAAWFNVVLYRE----IGESAARYLEREFGQPYVKTVPIGV------ 244 (519)
T ss_pred HHHHHHHHHHcCCeE-EEEeCCCCCHHHHHh-cccCcEEEEeCHH----HHHHHHHHHHHHhCCcccccccccH------
Confidence 477889999999987 666655 4556665 4455555554322 3566677755 8999875311121
Q ss_pred CCeEEEEcCCCHHHHHHHHHHHHhC
Q 003758 235 GAQVIFFQKDNPEGLSRAFSLFISN 259 (797)
Q Consensus 235 g~nG~Lfd~~D~eeLAeaI~~LLed 259 (797)
.+.+++.+.|.+++..
T Consensus 245 ---------~~T~~fL~~la~~~g~ 260 (519)
T PRK02910 245 ---------GATARFIREVAELLNL 260 (519)
T ss_pred ---------HHHHHHHHHHHHHhCC
Confidence 3466677777777654
No 243
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=22.30 E-value=6.9e+02 Score=27.26 Aligned_cols=63 Identities=22% Similarity=0.389 Sum_probs=39.4
Q ss_pred eEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCChhHhh-------hcCCeEEEEcCCCH
Q 003758 175 SVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPIIKEYV-------AEGAQVIFFQKDNP 246 (797)
Q Consensus 175 ~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gGi~EiI-------~Dg~nG~Lfd~~D~ 246 (797)
-++..| ..++..||++|++...- |--+++...-+.=++-|..-.+-|++ .+|+...-...+|+
T Consensus 17 LiTvkg-----~~ll~~advviYAGSLV----~~elL~~~~~~aei~nSa~~tLeeIi~~m~~a~~~Gk~VvRLhSGDp 86 (254)
T COG2875 17 LITVKG-----QRLLEKADVVIYAGSLV----PPELLEYCRPDAEIVNSASLTLEEIIDLMVDAVREGKDVVRLHSGDP 86 (254)
T ss_pred eeeehH-----HHHHhhCCEEEECCCcC----CHHHHhhcCCCCEEEecCcCCHHHHHHHHHHHHHcCCeEEEeecCCh
Confidence 455555 46899999999964332 46667766666667766655444433 34555555556664
No 244
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=22.22 E-value=8.5e+02 Score=25.43 Aligned_cols=109 Identities=9% Similarity=0.043 Sum_probs=61.8
Q ss_pred EEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHH-HHHH---hCCcEEEc
Q 003758 148 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIV-RAMT---FGIPVITP 223 (797)
Q Consensus 148 LIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLL-EAMA---~G~PVIas 223 (797)
++++.+.+. +...+....+ .++.. +.......+....+...|++|+=-...+ .-|..++ +.+. -++|||.-
T Consensus 13 ~~~v~~~~l-~~~~l~~~L~-~~~~v--~~~~~~~~~~~~~~~~~DvvllDi~~p~-~~G~~~~~~~i~~~~p~~~vvvl 87 (216)
T PRK10100 13 LLLITKPSL-QATALLQHLK-QSLAI--TGKLHNIQRSLDDISSGSIILLDMMEAD-KKLIHYWQDTLSRKNNNIKILLL 87 (216)
T ss_pred EEEEeChHh-hhHHHHHHHH-HhCCC--eEEEcCHHHhhccCCCCCEEEEECCCCC-ccHHHHHHHHHHHhCCCCcEEEE
Confidence 466666655 3566666665 33332 2222333344333444788887333221 2344443 4333 46677754
Q ss_pred CCC--ChhHhhh--cCCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 003758 224 DFP--IIKEYVA--EGAQVIFFQKDNPEGLSRAFSLFISNGK 261 (797)
Q Consensus 224 d~g--Gi~EiI~--Dg~nG~Lfd~~D~eeLAeaI~~LLedpe 261 (797)
... .....+. .|..||+....++++|.++|..+++...
T Consensus 88 t~~~~~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~ 129 (216)
T PRK10100 88 NTPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGEC 129 (216)
T ss_pred ECCchhHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCc
Confidence 332 2222223 3788999999999999999999987654
No 245
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=22.17 E-value=1.5e+02 Score=35.13 Aligned_cols=51 Identities=20% Similarity=0.154 Sum_probs=38.1
Q ss_pred HcCCCCCeEEEecChhhHHHHHHHcC-EEEEccCCCCCCccHHHHHHHHhCCcEEEcCCCC
Q 003758 168 RLGLLEHSVRHYGFNGDVNGVLLMAD-IVLYGSSQVEQGFPSLIVRAMTFGIPVITPDFPI 227 (797)
Q Consensus 168 elgL~d~~V~flG~~edl~~~L~aAD-V~V~PS~~Ee~GFPlvLLEAMA~G~PVIasd~gG 227 (797)
++.... +|+.+...=+...++...| |++.+|..- .||+.||+|+++...+-
T Consensus 203 ~~~~~~-r~~ll~edfnpisll~~~dkvy~~ts~mg--------feall~~~~~~~fg~p~ 254 (671)
T COG3563 203 QLSQQH-RVHLLAEDFNPISLLQNVDKVYCVTSQMG--------FEALLCGKPLTTFGLPW 254 (671)
T ss_pred hhccCc-eEEEecccCChHHHHHhcceeEEeecccc--------HHHHhcCCceeeecchh
Confidence 344455 7888886667788899988 455666542 69999999999987663
No 246
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=22.14 E-value=2.5e+02 Score=28.28 Aligned_cols=92 Identities=20% Similarity=0.311 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCCCCeEEEecC--hhhHHHHHHHc----C-EEEEccCCCCCCccHHHHHHHH-hCCcEEEcCCC--Chh
Q 003758 160 DALQEVASRLGLLEHSVRHYGF--NGDVNGVLLMA----D-IVLYGSSQVEQGFPSLIVRAMT-FGIPVITPDFP--IIK 229 (797)
Q Consensus 160 e~Leela~elgL~d~~V~flG~--~edl~~~L~aA----D-V~V~PS~~Ee~GFPlvLLEAMA-~G~PVIasd~g--Gi~ 229 (797)
..+++.+.++|+ .|.|..+ ..++.+.+..+ | +++.|.-+- -.+..+..|++ .++|+|=--.+ ..+
T Consensus 33 ~~~~~~a~~~g~---~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~T--HtSiAl~DAl~~~~~P~VEVHiSNi~aR 107 (146)
T PRK05395 33 ALLEEEAAELGV---ELEFFQSNHEGELIDRIHEARDGADGIIINPGAYT--HTSVALRDALAAVSIPVIEVHLSNIHAR 107 (146)
T ss_pred HHHHHHHHHcCC---EEEEEeeCcHHHHHHHHHhcccCCcEEEECchHHH--HHHHHHHHHHHcCCCCEEEEecCCcccc
Confidence 344445555666 4777773 34577777665 3 556677664 57899999975 68999932222 122
Q ss_pred ------HhhhcCCeEEEEcCCCHHHHHHHHHHHH
Q 003758 230 ------EYVAEGAQVIFFQKDNPEGLSRAFSLFI 257 (797)
Q Consensus 230 ------EiI~Dg~nG~Lfd~~D~eeLAeaI~~LL 257 (797)
.++.+-..|.++-. -.....-++..++
T Consensus 108 E~fR~~S~is~~a~G~I~G~-G~~gY~lAl~al~ 140 (146)
T PRK05395 108 EEFRHHSYISDVAVGVICGF-GADGYLLALEALA 140 (146)
T ss_pred ccccccccccccceEEEeeC-CHHhHHHHHHHHH
Confidence 23444455666532 2344444444443
No 247
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=22.04 E-value=1.2e+03 Score=26.59 Aligned_cols=120 Identities=15% Similarity=0.200 Sum_probs=64.6
Q ss_pred cccHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEeCC-CCCCHHHHHHHHHHcCCCCCeEEEec--ChhhHHHHHHHcCE
Q 003758 118 SWDYAVAMHDVGPLLIKYARRNSVEGSFKFVFLCGNS-TDGYNDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADI 194 (797)
Q Consensus 118 ~Kn~~lLLkAl~~Ll~e~~~lk~~~pdvkfLIIvG~g-~~~Y~e~Leela~elgL~d~~V~flG--~~edl~~~L~aADV 194 (797)
..+++.+++++...+......... .+-. +-|+|.. ...-...++++.++.|+.. +..+.+ ..+++.. +..|.+
T Consensus 133 ~~G~~~a~~~l~~~l~~~~~~~~~-~~~~-VNiig~~~~~~d~~el~~lL~~~Gl~v-~~~~~~~~s~eei~~-~~~A~l 208 (410)
T cd01968 133 NLGNKLACEALLDHVIGTEEPEPL-TPYD-INLIGEFNVAGELWGVKPLLEKLGIRV-LASITGDSRVDEIRR-AHRAKL 208 (410)
T ss_pred hHHHHHHHHHHHHHhcCCCCcccC-CCCc-EEEECCCCCcccHHHHHHHHHHcCCeE-EEEeCCCCCHHHHHh-hhhCcE
Confidence 355666776665443211100000 0222 2344532 2222468899999999986 556665 3455655 444555
Q ss_pred EEEccCCCCCCccHHHHHHH--HhCCcEEEcCCCChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCc
Q 003758 195 VLYGSSQVEQGFPSLIVRAM--TFGIPVITPDFPIIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNG 260 (797)
Q Consensus 195 ~V~PS~~Ee~GFPlvLLEAM--A~G~PVIasd~gGi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedp 260 (797)
-|..+. ..+..+.+.| -+|+|.+.... +.....+++.+.|.+++..+
T Consensus 209 niv~~~----~~~~~~a~~L~~~fGip~~~~~p---------------~G~~~t~~~l~~ia~~~g~~ 257 (410)
T cd01968 209 NVVQCS----KSMIYLARKMEEKYGIPYIEVSF---------------YGIRDTSKSLRNIAELLGDE 257 (410)
T ss_pred EEEEch----hHHHHHHHHHHHHhCCCeEecCc---------------CcHHHHHHHHHHHHHHhCCc
Confidence 443322 2345567777 58999885311 11135677778887777654
No 248
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=21.79 E-value=6.5e+02 Score=26.46 Aligned_cols=69 Identities=20% Similarity=0.078 Sum_probs=41.0
Q ss_pred CCcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEec--------ChhhHHHHHHH--cCEEEEccCCCCCCccHHHHH
Q 003758 143 GSFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYG--------FNGDVNGVLLM--ADIVLYGSSQVEQGFPSLIVR 212 (797)
Q Consensus 143 pdvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG--------~~edl~~~L~a--ADV~V~PS~~Ee~GFPlvLLE 212 (797)
-+.++++++++.++ ....+.+++.|++- +.+-. ..+++.+.+.. +|++|+.++.- -+|..+++
T Consensus 25 l~~~i~~visn~~~---~~~~~~A~~~gIp~--~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~agy~~--il~~~~l~ 97 (207)
T PLN02331 25 VNGDVVVVVTNKPG---CGGAEYARENGIPV--LVYPKTKGEPDGLSPDELVDALRGAGVDFVLLAGYLK--LIPVELVR 97 (207)
T ss_pred CCeEEEEEEEeCCC---ChHHHHHHHhCCCE--EEeccccCCCcccchHHHHHHHHhcCCCEEEEeCcch--hCCHHHHh
Confidence 34565667777665 45566788888873 33221 12345555555 78888765544 56677777
Q ss_pred HHHhCC
Q 003758 213 AMTFGI 218 (797)
Q Consensus 213 AMA~G~ 218 (797)
+...|+
T Consensus 98 ~~~~~~ 103 (207)
T PLN02331 98 AYPRSI 103 (207)
T ss_pred hCCCCE
Confidence 666554
No 249
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=21.73 E-value=1.1e+02 Score=31.10 Aligned_cols=42 Identities=31% Similarity=0.464 Sum_probs=29.0
Q ss_pred HHHHHHH-cCEEEEc--cCCC--CCCccHHHHHHHHhCCcEEEcCCC
Q 003758 185 VNGVLLM-ADIVLYG--SSQV--EQGFPSLIVRAMTFGIPVITPDFP 226 (797)
Q Consensus 185 l~~~L~a-ADV~V~P--S~~E--e~GFPlvLLEAMA~G~PVIasd~g 226 (797)
+...+.. +|++|+. ...| +.||--.+.+|++.|+||++.=..
T Consensus 86 l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 86 LRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred HHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 4444444 8999983 2223 225677899999999999986444
No 250
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=21.39 E-value=5.3e+02 Score=24.59 Aligned_cols=67 Identities=10% Similarity=0.085 Sum_probs=45.4
Q ss_pred CCcEEEEEEeCCCCC-CHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHc-CEEEEccCCCCCCccHHHHHHH
Q 003758 143 GSFKFVFLCGNSTDG-YNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMA-DIVLYGSSQVEQGFPSLIVRAM 214 (797)
Q Consensus 143 pdvkfLIIvG~g~~~-Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aA-DV~V~PS~~Ee~GFPlvLLEAM 214 (797)
..+++++++++.... ....+..+++..+++ +.+.+...++...+... .+.+..-..+ ||.-.++.-+
T Consensus 41 gka~LVilA~D~s~~~~~~~i~~lc~~~~Ip---~~~~~sk~eLG~a~Gk~~~~svvaI~d~--g~a~~~~~~~ 109 (117)
T TIGR03677 41 GIAKLVVIAEDVEPPEIVAHLPALCEEKGIP---YVYVKKKEDLGAAAGLEVGAASAAIVDE--GKAEELLKEI 109 (117)
T ss_pred CCccEEEEeCCCCcHHHHHHHHHHHHHcCCC---EEEeCCHHHHHHHhCCCCCeEEEEEEch--hhhHHHHHHH
Confidence 457767777777553 357788888888875 77888888999998863 3444433333 6666655544
No 251
>PF01989 DUF126: Protein of unknown function DUF126; InterPro: IPR002840 These archaebacterial proteins have no known function.; PDB: 2HI6_A.
Probab=21.32 E-value=46 Score=30.12 Aligned_cols=18 Identities=33% Similarity=0.811 Sum_probs=10.6
Q ss_pred eCCCCCccccc-ccccccc
Q 003758 695 LDPLSGSLQEQ-HPIERRR 712 (797)
Q Consensus 695 ~~~~~~~~~~~-~~~~~~~ 712 (797)
|||+||..-|+ |||+++.
T Consensus 8 vDp~tG~ii~~~H~l~G~s 26 (82)
T PF01989_consen 8 VDPETGVIIDKGHPLEGQS 26 (82)
T ss_dssp B-TTT-BB-S--SSSTT-B
T ss_pred ccCCceEEEecCCCcCCCc
Confidence 89999999875 7887653
No 252
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=21.26 E-value=8.1e+02 Score=24.29 Aligned_cols=105 Identities=11% Similarity=0.048 Sum_probs=59.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHH--HcCEEEEccCCCCCCccHHHHHHHH---hCCcEEEc
Q 003758 149 FLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMT---FGIPVITP 223 (797)
Q Consensus 149 IIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~--aADV~V~PS~~Ee~GFPlvLLEAMA---~G~PVIas 223 (797)
+++.+.+. ....+.......+. .|.......+....+. ..|++++-..... .-|..+++.+. .++|||..
T Consensus 4 liv~d~~~-~~~~l~~~L~~~g~---~v~~~~~~~~~~~~~~~~~~dlvild~~~~~-~~g~~~~~~lr~~~~~~pii~l 78 (227)
T PRK09836 4 LIVEDEKK-TGEYLTKGLTEAGF---VVDLADNGLNGYHLAMTGDYDLIILDIMLPD-VNGWDIVRMLRSANKGMPILLL 78 (227)
T ss_pred EEEeCCHH-HHHHHHHHHHHCCC---EEEEECCHHHHHHHHhhCCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCCEEEE
Confidence 45554432 12445555554444 3555554444333333 3677777433321 44566676665 35787764
Q ss_pred CCC----ChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHh
Q 003758 224 DFP----IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFIS 258 (797)
Q Consensus 224 d~g----Gi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLe 258 (797)
... ...+.+..|..+++..|.+.++|...+..++.
T Consensus 79 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 117 (227)
T PRK09836 79 TALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 (227)
T ss_pred EcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 332 23345567788999999999888888766543
No 253
>PLN00203 glutamyl-tRNA reductase
Probab=21.00 E-value=1.5e+03 Score=27.24 Aligned_cols=89 Identities=13% Similarity=0.085 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHh-----CCcEEEcCCCChhHh---
Q 003758 160 DALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTF-----GIPVITPDFPIIKEY--- 231 (797)
Q Consensus 160 e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~-----G~PVIasd~gGi~Ei--- 231 (797)
+....++.+++- . .+.+. ..+++...+..+|++|..+.....-+.-..++.+.. |.|.+.-|...-+++
T Consensus 301 era~~La~~~~g-~-~i~~~-~~~dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~ 377 (519)
T PLN00203 301 ERVAALREEFPD-V-EIIYK-PLDEMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGAC 377 (519)
T ss_pred HHHHHHHHHhCC-C-ceEee-cHhhHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCccc
Confidence 556666665531 1 23322 234677888999999986544321233344555432 578888887755443
Q ss_pred hhcCCeEEEEcCCCHHHHHH
Q 003758 232 VAEGAQVIFFQKDNPEGLSR 251 (797)
Q Consensus 232 I~Dg~nG~Lfd~~D~eeLAe 251 (797)
+.+-.+-.+++.+|..++++
T Consensus 378 v~~l~~v~lydiDdL~~i~~ 397 (519)
T PLN00203 378 VSELESARVYNVDDLKEVVA 397 (519)
T ss_pred cccCCCCeEEEeccHHHHHH
Confidence 22223356777677666555
No 254
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=20.86 E-value=4.9e+02 Score=29.52 Aligned_cols=106 Identities=18% Similarity=0.124 Sum_probs=55.5
Q ss_pred CcEEEEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEE--EccCCCCCCccHHHHHHHHhCCcEE
Q 003758 144 SFKFVFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVL--YGSSQVEQGFPSLIVRAMTFGIPVI 221 (797)
Q Consensus 144 dvkfLIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V--~PS~~Ee~GFPlvLLEAMA~G~PVI 221 (797)
+++++-|+..++ +..++.++++|.+ .. .++.+++...|+.+ .|+......-.-...+|+..|+.|+
T Consensus 27 ~~eLvaV~d~~~----erA~~~A~~~gi~-----~y---~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL 94 (343)
T TIGR01761 27 RFELAGILAQGS----ERSRALAHRLGVP-----LY---CEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVL 94 (343)
T ss_pred CcEEEEEEcCCH----HHHHHHHHHhCCC-----cc---CCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEE
Confidence 677433444332 6777888877753 12 35566666555544 4443110012346778999999999
Q ss_pred EcCCCCh---hHhhhc-CCeEEEEcCCCHHHHHHHHHHHHhCcc
Q 003758 222 TPDFPII---KEYVAE-GAQVIFFQKDNPEGLSRAFSLFISNGK 261 (797)
Q Consensus 222 asd~gGi---~EiI~D-g~nG~Lfd~~D~eeLAeaI~~LLedpe 261 (797)
+=.--.. .+++.- ..+|..+-.+...-...++.++++...
T Consensus 95 ~EKPla~~Ea~el~~~A~~~g~~l~v~~f~p~~~~vr~~i~~~~ 138 (343)
T TIGR01761 95 QEHPLHPRDIQDLLRLAERQGRRYLVNTFYPHLPAVRRFIEYAR 138 (343)
T ss_pred EcCCCCHHHHHHHHHHHHHcCCEEEEEecCHHHHHHHHHHHcch
Confidence 8653322 222221 112222222333346677777776653
No 255
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=20.60 E-value=1e+03 Score=25.14 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCCCCCeEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccH---------HHHHHHHh------CCcEE
Q 003758 159 NDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPS---------LIVRAMTF------GIPVI 221 (797)
Q Consensus 159 ~e~Leela~elgL~d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPl---------vLLEAMA~------G~PVI 221 (797)
...+.+.++++|... -+-+-+ +.+.+..++...|.+++-|... |||. .+-+.-.. ++||.
T Consensus 95 ~~~~l~~ik~~g~k~-GlalnP~Tp~~~i~~~l~~~D~vlvMtV~P--GfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~ 171 (220)
T PRK08883 95 VDRTLQLIKEHGCQA-GVVLNPATPLHHLEYIMDKVDLILLMSVNP--GFGGQSFIPHTLDKLRAVRKMIDESGRDIRLE 171 (220)
T ss_pred HHHHHHHHHHcCCcE-EEEeCCCCCHHHHHHHHHhCCeEEEEEecC--CCCCceecHhHHHHHHHHHHHHHhcCCCeeEE
Confidence 466777888899875 444444 5678999999999998867655 6554 23332222 36664
Q ss_pred EcCCC----ChhHhhhcCCeEEEE
Q 003758 222 TPDFP----IIKEYVAEGAQVIFF 241 (797)
Q Consensus 222 asd~g----Gi~EiI~Dg~nG~Lf 241 (797)
+ +-| .+++++..|.++++.
T Consensus 172 v-dGGI~~eni~~l~~aGAd~vVv 194 (220)
T PRK08883 172 I-DGGVKVDNIREIAEAGADMFVA 194 (220)
T ss_pred E-ECCCCHHHHHHHHHcCCCEEEE
Confidence 4 222 355667777777654
No 256
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=20.39 E-value=7e+02 Score=31.28 Aligned_cols=105 Identities=14% Similarity=0.111 Sum_probs=65.5
Q ss_pred EEEEeCCCCCCHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHH----cCEEEEccCCCCCCccHHHHHHHH---hCCcE
Q 003758 148 VFLCGNSTDGYNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLM----ADIVLYGSSQVEQGFPSLIVRAMT---FGIPV 220 (797)
Q Consensus 148 LIIvG~g~~~Y~e~Leela~elgL~d~~V~flG~~edl~~~L~a----ADV~V~PS~~Ee~GFPlvLLEAMA---~G~PV 220 (797)
++++.+.+.. ...+.......|.. |......++....+.. .|++++ .... .-|..+++.+. ..+||
T Consensus 700 ILvVddd~~~-~~~l~~~L~~~G~~---v~~~~s~~~al~~l~~~~~~~DlVll-~~~~--~~g~~l~~~l~~~~~~ipI 772 (828)
T PRK13837 700 VLLVEPDDAT-LERYEEKLAALGYE---PVGFSTLAAAIAWISKGPERFDLVLV-DDRL--LDEEQAAAALHAAAPTLPI 772 (828)
T ss_pred EEEEcCCHHH-HHHHHHHHHHCCCE---EEEeCCHHHHHHHHHhCCCCceEEEE-CCCC--CCHHHHHHHHHhhCCCCCE
Confidence 4666655432 35556666666653 5555555555555533 588888 3322 44555555554 35787
Q ss_pred EEcCCC----ChhHhhhcCCeEEEEcCCCHHHHHHHHHHHHhCc
Q 003758 221 ITPDFP----IIKEYVAEGAQVIFFQKDNPEGLSRAFSLFISNG 260 (797)
Q Consensus 221 Iasd~g----Gi~EiI~Dg~nG~Lfd~~D~eeLAeaI~~LLedp 260 (797)
|..... ...+....| .+++..|-+.++|..+|..++...
T Consensus 773 Ivls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 773 ILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALATA 815 (828)
T ss_pred EEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence 754322 344455566 889999999999999999988643
No 257
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=20.38 E-value=3.3e+02 Score=32.53 Aligned_cols=70 Identities=17% Similarity=0.169 Sum_probs=49.8
Q ss_pred EEEEeC-CCCCC---HHHHHHHHHHcCCCCCeEEEec--ChhhHHHHHHHcCEEEEccCCCCCCccHHHHHHHHhCCcEE
Q 003758 148 VFLCGN-STDGY---NDALQEVASRLGLLEHSVRHYG--FNGDVNGVLLMADIVLYGSSQVEQGFPSLIVRAMTFGIPVI 221 (797)
Q Consensus 148 LIIvG~-g~~~Y---~e~Leela~elgL~d~~V~flG--~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLEAMA~G~PVI 221 (797)
=|++|. +-..| .+.+++++++.|.+. .+..+| +.+.+..+ ...|++|+.++.+ +++...-.+-+|||
T Consensus 285 GIlVgTL~~q~~~~ii~~l~~li~~~GkK~-yl~~vgkinpaKLaNF-~eID~fV~vaCPr-----~sidd~~~F~KPVl 357 (496)
T TIGR00272 285 GIVVGTLGVRNTRETINELRKMIKTAGKKH-YLFVVGKPNPAKLANF-EDIDIFVLLGCSQ-----SGIIDSNEFYRPIV 357 (496)
T ss_pred EEEEecCccCCCHHHHHHHHHHHHHcCCcE-EEEEeCCCCHHHHhCC-CCCCEEEEccCCC-----cccccHhhCCCcee
Confidence 356665 34445 556777888889886 777778 44445443 4699999988776 56678888999999
Q ss_pred EcC
Q 003758 222 TPD 224 (797)
Q Consensus 222 asd 224 (797)
++-
T Consensus 358 TP~ 360 (496)
T TIGR00272 358 TPF 360 (496)
T ss_pred cHH
Confidence 874
No 258
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=20.17 E-value=2.1e+02 Score=26.19 Aligned_cols=75 Identities=20% Similarity=0.363 Sum_probs=45.7
Q ss_pred EEEEEeCCCCC--CHHHHHHHHHHcCCCCCeEEEecChhhHHHHHHHcCEEEEccCCCCCCccHHHHH--HHHhCCcEEE
Q 003758 147 FVFLCGNSTDG--YNDALQEVASRLGLLEHSVRHYGFNGDVNGVLLMADIVLYGSSQVEQGFPSLIVR--AMTFGIPVIT 222 (797)
Q Consensus 147 fLIIvG~g~~~--Y~e~Leela~elgL~d~~V~flG~~edl~~~L~aADV~V~PS~~Ee~GFPlvLLE--AMA~G~PVIa 222 (797)
+|++||.|-.. -...+++.+++.|++- .|...+ ..++......+|+++..... .+=..-++ +.-.++||..
T Consensus 2 Il~~Cg~G~sTS~~~~ki~~~~~~~~~~~-~v~~~~-~~~~~~~~~~~Diil~~Pqv---~~~~~~i~~~~~~~~~pv~~ 76 (96)
T cd05564 2 ILLVCSAGMSTSILVKKMKKAAEKRGIDA-EIEAVP-ESELEEYIDDADVVLLGPQV---RYMLDEVKKKAAEYGIPVAV 76 (96)
T ss_pred EEEEcCCCchHHHHHHHHHHHHHHCCCce-EEEEec-HHHHHHhcCCCCEEEEChhH---HHHHHHHHHHhccCCCcEEE
Confidence 36888887543 1345566667777763 444444 34566778899998885432 22233344 3457899987
Q ss_pred cCCC
Q 003758 223 PDFP 226 (797)
Q Consensus 223 sd~g 226 (797)
.+..
T Consensus 77 I~~~ 80 (96)
T cd05564 77 IDMM 80 (96)
T ss_pred cChH
Confidence 6654
No 259
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=20.13 E-value=6.6e+02 Score=27.83 Aligned_cols=39 Identities=23% Similarity=0.231 Sum_probs=29.7
Q ss_pred hHHHHHH--HcCEEEEccCCCCCCccHHHHHHHH--hCCcEEEc
Q 003758 184 DVNGVLL--MADIVLYGSSQVEQGFPSLIVRAMT--FGIPVITP 223 (797)
Q Consensus 184 dl~~~L~--aADV~V~PS~~Ee~GFPlvLLEAMA--~G~PVIas 223 (797)
++.+.+. .+|++|-.|..-+ -|.--++++|+ +..|||-+
T Consensus 96 ~L~e~i~~v~ptvlIG~S~~~g-~ft~evv~~Ma~~~~~PIIFa 138 (279)
T cd05312 96 SLLEVVKAVKPTVLIGLSGVGG-AFTEEVVRAMAKSNERPIIFA 138 (279)
T ss_pred CHHHHHHhcCCCEEEEeCCCCC-CCCHHHHHHHHhcCCCCEEEE
Confidence 4566666 6799998886432 68999999999 58899843
Done!