Query 003762
Match_columns 797
No_of_seqs 317 out of 1942
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 03:13:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003762.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003762hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x9n_A DNA ligase I; 5'-adenyl 100.0 2E-124 8E-129 1104.4 57.8 615 165-779 30-658 (688)
2 2hiv_A Thermostable DNA ligase 100.0 4E-115 1E-119 1018.0 57.8 572 184-780 14-597 (621)
3 3gde_A DNA ligase; DNA-binding 100.0 1E-110 5E-115 967.8 51.1 535 188-780 1-542 (558)
4 2cfm_A Thermostable DNA ligase 100.0 1E-108 3E-113 954.9 50.0 536 191-780 1-542 (561)
5 3l2p_A DNA ligase 3; DNA ligas 100.0 7E-107 2E-111 939.8 47.1 539 189-780 5-568 (579)
6 1vs0_A Putative DNA ligase-lik 100.0 6.9E-65 2.4E-69 549.4 26.4 302 426-778 3-308 (310)
7 1a0i_A DNA ligase; DNA replica 100.0 6.4E-59 2.2E-63 510.1 23.7 306 423-771 2-348 (348)
8 1fvi_A Chlorella virus DNA lig 100.0 5.8E-50 2E-54 430.4 24.9 259 431-772 2-293 (297)
9 4htp_A DNA ligase 4; helical d 100.0 2.6E-36 8.9E-41 315.0 15.0 207 188-421 11-236 (240)
10 1p16_A GTP--RNA, mRNA capping 100.0 1.8E-34 6E-39 321.4 17.0 246 450-772 57-343 (395)
11 1ckm_A MRNA capping enzyme; nu 100.0 5.8E-31 2E-35 286.6 18.9 188 451-689 73-271 (330)
12 3vnn_A DNA ligase 4; non-homol 100.0 9.2E-30 3.2E-34 244.8 8.0 132 455-590 1-138 (139)
13 3kyh_C MRNA-capping enzyme sub 99.9 2.5E-24 8.6E-29 241.3 13.3 175 448-655 60-264 (461)
14 3rtx_A MRNA-capping enzyme; gu 99.9 3.4E-24 1.2E-28 233.9 10.9 167 452-653 62-247 (343)
15 2vug_A PAB1020; RNA, ligase, A 99.5 3.1E-13 1.1E-17 149.9 16.9 144 452-619 94-241 (389)
16 3qwu_A DNA ligase; structural 99.4 3E-12 1E-16 139.8 14.0 144 452-619 72-221 (370)
17 1ta8_A DNA ligase, NAD-depende 98.2 1.3E-06 4.6E-11 94.6 7.8 169 454-640 114-319 (332)
18 1b04_A Protein (DNA ligase); D 98.1 2.6E-06 8.7E-11 92.0 7.6 169 453-639 107-312 (318)
19 1s68_A RNA ligase 2; ribonucle 98.0 1.5E-05 5.1E-10 83.4 10.7 108 450-577 25-145 (249)
20 2hvq_A ORF1, hypothetical 37.6 98.0 3.5E-05 1.2E-09 83.9 13.8 108 450-577 26-146 (335)
21 1xk5_A Snurportin-1; protein-R 97.9 5.4E-05 1.8E-09 76.6 11.1 167 433-640 5-184 (204)
22 1zau_A DNA ligase; AMP; HET: D 97.8 2.1E-06 7.1E-11 93.0 -1.1 185 433-634 87-319 (328)
23 4glw_A DNA ligase; inhibitor, 97.7 0.00011 3.8E-09 79.0 10.5 168 434-619 75-280 (305)
24 4glx_A DNA ligase; inhibitor, 97.6 0.00018 6.3E-09 83.5 10.3 220 453-701 108-368 (586)
25 2owo_A DNA ligase; protein-DNA 97.5 0.00023 7.9E-09 83.8 10.5 216 454-699 109-366 (671)
26 3uq8_A DNA ligase; adenylated 97.5 0.00028 9.4E-09 76.3 9.2 153 453-619 107-291 (322)
27 3gjx_B Snurportin-1; transport 97.4 0.00059 2E-08 73.8 11.3 168 433-642 106-286 (365)
28 3jsl_A DNA ligase; NAD+-depend 97.3 0.00046 1.6E-08 74.4 8.2 171 452-640 104-311 (318)
29 1dgs_A DNA ligase; AMP complex 97.2 0.00079 2.7E-08 79.2 9.8 211 433-670 80-338 (667)
30 1xdn_A RNA editing ligase MP52 97.1 0.0017 5.9E-08 68.2 10.7 181 452-641 32-265 (277)
31 3sgi_A DNA ligase; HET: DNA AM 97.1 0.00045 1.5E-08 80.4 6.3 192 454-670 117-350 (615)
32 2c5u_A RNA ligase, T4 RNA liga 96.7 0.0097 3.3E-07 65.7 13.0 142 453-641 93-246 (375)
33 4e6n_A Metallophosphoesterase; 96.7 0.0051 1.7E-07 66.9 9.7 166 453-619 81-333 (427)
34 3gde_A DNA ligase; DNA-binding 94.7 0.1 3.5E-06 60.4 10.6 91 189-289 113-206 (558)
35 2cfm_A Thermostable DNA ligase 93.2 0.25 8.4E-06 57.3 9.9 92 189-290 109-203 (561)
36 2hiv_A Thermostable DNA ligase 92.8 0.31 1.1E-05 57.1 10.1 92 189-290 137-234 (621)
37 1x9n_A DNA ligase I; 5'-adenyl 90.4 0.49 1.7E-05 56.1 8.3 93 300-412 53-155 (688)
38 4htp_A DNA ligase 4; helical d 89.3 0.77 2.6E-05 47.4 7.9 86 189-291 141-229 (240)
39 3l2p_A DNA ligase 3; DNA ligas 74.2 4.5 0.00016 46.9 7.1 85 189-290 116-200 (579)
40 3b4u_A Dihydrodipicolinate syn 43.2 37 0.0013 35.6 6.7 57 563-619 51-107 (294)
41 3l21_A DHDPS, dihydrodipicolin 42.1 48 0.0016 35.0 7.4 57 563-619 63-119 (304)
42 3s5o_A 4-hydroxy-2-oxoglutarat 42.1 46 0.0016 35.1 7.3 65 555-619 52-118 (307)
43 3tak_A DHDPS, dihydrodipicolin 41.2 44 0.0015 34.9 6.9 60 559-619 46-105 (291)
44 1f6k_A N-acetylneuraminate lya 41.0 52 0.0018 34.4 7.4 65 555-619 42-108 (293)
45 3m5v_A DHDPS, dihydrodipicolin 41.0 58 0.002 34.2 7.8 57 563-619 55-112 (301)
46 3cpr_A Dihydrodipicolinate syn 40.4 63 0.0022 34.0 8.0 57 563-619 64-120 (304)
47 2ehh_A DHDPS, dihydrodipicolin 40.4 58 0.002 34.1 7.7 57 563-619 48-104 (294)
48 3flu_A DHDPS, dihydrodipicolin 40.1 49 0.0017 34.7 7.1 61 558-619 51-111 (297)
49 3qze_A DHDPS, dihydrodipicolin 39.8 49 0.0017 35.1 7.1 57 563-619 71-127 (314)
50 3daq_A DHDPS, dihydrodipicolin 39.6 49 0.0017 34.6 7.0 57 563-619 50-106 (292)
51 2yxg_A DHDPS, dihydrodipicolin 39.4 56 0.0019 34.1 7.4 57 563-619 48-104 (289)
52 3eb2_A Putative dihydrodipicol 38.7 46 0.0016 35.0 6.6 65 555-619 42-108 (300)
53 2wkj_A N-acetylneuraminate lya 38.2 59 0.002 34.2 7.4 57 563-619 59-115 (303)
54 3dz1_A Dihydrodipicolinate syn 37.7 51 0.0017 34.9 6.8 56 563-619 56-111 (313)
55 1o5k_A DHDPS, dihydrodipicolin 37.1 56 0.0019 34.5 7.0 57 563-619 60-116 (306)
56 3a5f_A Dihydrodipicolinate syn 37.1 59 0.002 34.0 7.1 57 563-619 49-105 (291)
57 1xky_A Dihydrodipicolinate syn 36.3 61 0.0021 34.0 7.1 57 563-619 60-116 (301)
58 3na8_A Putative dihydrodipicol 35.9 47 0.0016 35.3 6.2 65 555-619 62-128 (315)
59 3si9_A DHDPS, dihydrodipicolin 35.4 53 0.0018 34.9 6.5 57 563-619 70-126 (315)
60 3fkr_A L-2-keto-3-deoxyarabona 34.7 44 0.0015 35.4 5.7 57 563-619 56-112 (309)
61 3h5d_A DHDPS, dihydrodipicolin 34.6 76 0.0026 33.6 7.5 57 563-619 55-112 (311)
62 2vc6_A MOSA, dihydrodipicolina 34.5 57 0.0019 34.1 6.5 65 555-619 38-104 (292)
63 2r8w_A AGR_C_1641P; APC7498, d 34.3 73 0.0025 34.1 7.4 57 563-619 82-138 (332)
64 4dpp_A DHDPS 2, dihydrodipicol 33.7 59 0.002 35.4 6.6 57 563-619 107-163 (360)
65 2v9d_A YAGE; dihydrodipicolini 33.4 60 0.0021 34.9 6.6 57 563-619 79-135 (343)
66 3qfe_A Putative dihydrodipicol 33.2 49 0.0017 35.2 5.8 57 563-619 59-115 (318)
67 2ojp_A DHDPS, dihydrodipicolin 33.1 54 0.0019 34.2 6.0 57 563-619 49-105 (292)
68 3d0c_A Dihydrodipicolinate syn 32.4 80 0.0027 33.4 7.2 64 555-619 50-115 (314)
69 2rfg_A Dihydrodipicolinate syn 31.3 59 0.002 34.1 6.0 65 555-619 38-104 (297)
70 3e96_A Dihydrodipicolinate syn 30.0 74 0.0025 33.7 6.5 65 554-619 49-115 (316)
71 2nuw_A 2-keto-3-deoxygluconate 25.6 1.3E+02 0.0046 31.2 7.5 54 563-619 47-100 (288)
72 2r91_A 2-keto-3-deoxy-(6-phosp 25.2 1.3E+02 0.0044 31.2 7.2 54 563-619 46-99 (286)
73 1w3i_A EDA, 2-keto-3-deoxy glu 21.7 2.2E+02 0.0075 29.6 8.2 54 563-619 47-100 (293)
No 1
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=100.00 E-value=2.3e-124 Score=1104.35 Aligned_cols=615 Identities=47% Similarity=0.841 Sum_probs=566.6
Q ss_pred hhhhhcccCCCCCCCcccccccCCCccchHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCccCC
Q 003762 165 SNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAP 244 (797)
Q Consensus 165 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~F~~la~~~e~I~~tssR~~k~~iL~~~fr~~i~~~p~dl~~~vyL~~~~l~P 244 (797)
..+.....+...|+|..+++|..|++|+|..||++|++|++|++|++|+++|++||+.+++.+|+|++++|||++|+|+|
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~i~~t~~r~~k~~~l~~~~~~~~~~~~~dl~~~v~ll~g~l~P 109 (688)
T 1x9n_A 30 LDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGP 109 (688)
T ss_dssp -CGGGCCTTCSSCCHHHHCCSCTTSCCBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSSC
T ss_pred ccccccccCcccCCccccccccCCCCccHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcCChHHHHHHHHHHcCCCCc
Confidence 34556777888999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred CccccccCCChHHHHHHHHHHhCCCHHHHHHHHHhcCCHHHHHhhccccCCCCCCCCCCCHHHHHHHHHHHHHHhCCChH
Q 003762 245 AHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQ 324 (797)
Q Consensus 245 ~~e~~elGIge~~L~kal~~a~G~s~~~ik~~y~~~GDlg~vA~~~r~~q~~l~~~~~LTI~eV~~~L~kIA~~~G~~s~ 324 (797)
+|++++||||+++|+|+|++++|++.+.+++.|++.||||+||++++++|++++.+++|||.+|++.|++||..+|++|+
T Consensus 110 ~~~~~elgi~~~~L~k~i~~~~g~~~~~~~~~~~~~GDlg~va~~~~~~~~~~~~~~~lTv~~V~~~L~~ia~~~g~~s~ 189 (688)
T 1x9n_A 110 PQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSAST 189 (688)
T ss_dssp GGGCCCCCCCHHHHHHHHHHHHTCCHHHHHHHHHHHTCHHHHTCC--------CCCSCCBHHHHHHHHHHHHHCCSTTHH
T ss_pred cccccccCcChHHHHHHHHHHHCcCHHHHHHHHHhcCCHHHHHHHHHhcccccCCCCCCcHHHHHHHHHHHHhhcCcchH
Confidence 99999999999999999999999999999999999999999999998888888788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHhhhccCcccHHHHHHHHHHhhccCCCCCC------------CCCCCcchHHHHH
Q 003762 325 EKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSK------------PPPNIQSPLEEAA 392 (797)
Q Consensus 325 ~~K~~~L~~LL~~~t~~E~k~LiRiIlkdLRiGi~e~tvl~Ala~a~~~~~~~~~------------~~~~l~~~l~~a~ 392 (797)
++|+.+|..||.+|++.|++||+|+|+++||||++++||+.|||.||.+++.+.. .+..+++.+++++
T Consensus 190 ~~k~~~l~~ll~~~~~~E~k~l~Rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (688)
T 1x9n_A 190 AKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQG 269 (688)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHTTCCCCSCCHHHHHHHHHHHHHHSCTTCCSSCSCSCTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcccccCccHHHHHHHHHHHhccCccccccchhhhhhhcccchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988753211 1113456788899
Q ss_pred HHHHHHhhcCCchhhhHhhhhhcCccccCCccccCCCCCCccccccccCChHHHHhhcCCCceEEEeecceEEEEEEEec
Q 003762 393 KIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLE 472 (797)
Q Consensus 393 ~~vk~~y~~~pd~~~v~~~l~~~g~~~l~~~~~l~~g~Pv~PMLA~~~~~i~~~l~k~~g~~~~~E~KyDG~R~qih~~~ 472 (797)
..|+++|+.+|||+.|++.++++|+..+.++|.+++|+|++||||++++++.++++++++.+|++|+||||+|+|+|+++
T Consensus 270 ~~v~~~~~~~p~~~~l~~~l~~~g~~~l~~~~~~~~g~pv~PMLA~~~~~~~~~l~~~~~~~~~~E~K~DG~R~qih~~~ 349 (688)
T 1x9n_A 270 MILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALE 349 (688)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHTGGGCCCCTTSCCCCCEEEEESSHHHHHHHTTTSCEEEEEEESSEEEEEEECT
T ss_pred HHHHHHHhhCCCHHHHHHHHHhcchhhcccccCcCCCCCccCccCCccCCHHHHHhhcCCCeEEEEEccccEeEEEEEcC
Confidence 99999999999999999999999988888889999999999999999999999999998889999999999999999966
Q ss_pred CCeEEEEecCCCccCCCcchHHHHHHhhcCCCCCCeEEEEEEEEEecCCCcccChhhHHhhhcccCCccccccceEEEEe
Q 003762 473 DGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAF 552 (797)
Q Consensus 473 ~g~V~ifSR~gkd~T~~yPel~~~l~~~~~~~v~~~ILDGElVa~d~~~g~~lpFq~L~~R~Rk~~~~~~~~~~v~~~vF 552 (797)
+|+|++|||+|+++|.+||++.+++..++..+++++|||||+|+||..+|+++|||.|++|.|+++.......+++|++|
T Consensus 350 ~g~v~l~SR~g~d~t~~fPel~~~l~~~~~~~~~~~ILDGElV~~d~~~g~~~~F~~L~~r~r~~~~~~~~~~~v~~~vF 429 (688)
T 1x9n_A 350 GGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAF 429 (688)
T ss_dssp TSCEEEECTTSCBCTTTCHHHHHTSGGGBCTTCCCEEEEEEEEEECTTTCSBCCHHHHTTSCSSCCCGGGCCSEEEEEEE
T ss_pred CCeEEEEeCCCCcccccchHHHHHHHHhhccCCCCeEEeEEEEEEeCCCCCcCCHHHHHHHhhcccchhhcccceEEEEE
Confidence 78999999999999999999999888877656789999999999998888899999999998876554445679999999
Q ss_pred eeeecCCccccCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeCCCCCCccCCCCCC
Q 003762 553 DILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSL 632 (797)
Q Consensus 553 DILylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~~~ds~Y~pGkRs~ 632 (797)
||||+||+++++.||.+||++|++++.+.+++++++++..+++.++++++|++++++|+||||+|++|++|+|++|+|+.
T Consensus 430 DlL~l~G~~l~~~Pl~eRr~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~a~~~g~EGlV~K~~~~ds~Y~~GkRs~ 509 (688)
T 1x9n_A 430 DLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSH 509 (688)
T ss_dssp EEEEETTEECTTSCHHHHHHHHHHHBCCBTTTEEECCEECCCCHHHHHHHHHHHHHTSEEEEEEEESSSSCSSCTTTCSE
T ss_pred echhhcCCccccCCHHHHHHHHHHhhccCCCcEEEEeeEecCCHHHHHHHHHHHHhcCCceeEEeecccCCCCCCCCcCc
Confidence 99999999999999999999999999887788999999999999999999999999999999999986679999999999
Q ss_pred CeEEEccccccccCCccceEEEeEEeCCCCcCCccceEEEEEecCCCceEEEeccccCCCCHHHHHHHHHhhccccCCCC
Q 003762 633 NWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKP 712 (797)
Q Consensus 633 ~WlKlK~dY~~~~~dtlDlvVIGa~~G~Gkr~g~~gsfllg~~d~~~g~~~~vgkVGTGfSd~~l~~l~~~l~~~~~~~p 712 (797)
+|+|+|++|+++|+||+|+||||+++|+|+|+|++|+|+|||||+++++|++||||||||||+++++|.+.++++++..|
T Consensus 510 ~WlK~K~~y~~~~~dt~D~vVIG~~~g~Gkr~g~~gslllg~~d~~~~~l~~vgkvgtGftd~~~~~l~~~l~~~~~~~~ 589 (688)
T 1x9n_A 510 NWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSP 589 (688)
T ss_dssp EEEEEEHHHHHSSCEEEEEEEEEEEEBCTTSBTSEEEEEEEEEETTTTEEEEEEEECCSCCHHHHHHHHHHHHHTEESSC
T ss_pred hHheeehhhhccccccccEEEEEEEeCCCCCCCceeeEEEEEEeCCCCeEEEEeeeCCCCCHHHHHHHHHHhhccccCCC
Confidence 99999999999999999999999999999999999999999999877899999999999999999999999999998877
Q ss_pred CCCcccCCCCCCceEeccceEEEEEeeeeecCCcccccccccCCCCCceeeeceEeeEeC--CcccccC
Q 003762 713 RPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKVFTVRFSVLAHLSF--PLLFCLG 779 (797)
Q Consensus 713 ~~~~~~~~~~~pdvw~eP~~V~EV~~~eit~S~~~~aa~g~v~~~~G~sLRFPRf~riR~--~~~~~~~ 779 (797)
++++.++....|+|||+|..||||+|+++|.||+|++|.|.+.+++|++||||||+|+|+ +|.+|..
T Consensus 590 ~~~~~~~~~~~p~vwv~P~~V~EV~~~e~t~S~~~~~~~g~~~~~~G~sLRfPrf~riR~DK~~~ea~t 658 (688)
T 1x9n_A 590 RPYVRIDGAVIPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATT 658 (688)
T ss_dssp CTTEECSSSCCCSEEECSCCEEEEEESEEEEESSCCTTTTTSCSSCEEEEESCEEEEECTTCCGGGSCB
T ss_pred CCccccCCCCCCcEEeCCcEEEEEEEEeeeccccccccccccccCCCceEECcEEEEEeCCCChHHCCC
Confidence 677777766789999999999999999999999999999999988999999999999999 9999954
No 2
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=100.00 E-value=3.8e-115 Score=1017.96 Aligned_cols=572 Identities=30% Similarity=0.524 Sum_probs=515.7
Q ss_pred cccCCCccchHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCccCCCcccc-ccCCChHHHHHHH
Q 003762 184 CWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGL-ELGIGDASIIKAL 262 (797)
Q Consensus 184 ~~~~~~~~~F~~la~~~e~I~~tssR~~k~~iL~~~fr~~i~~~p~dl~~~vyL~~~~l~P~~e~~-elGIge~~L~kal 262 (797)
.|..+++|+|..||++|++|++|++|++|+++|++||+.+ +|+|+.+++||++|+|+|+|+++ +|||+++.|+++|
T Consensus 14 ~~~~~~~~~f~~~~~~~~~l~~t~~r~~k~~~l~~~~~~~---~~~d~~~~~~ll~~~l~P~~~~~~~~gi~~~~L~k~~ 90 (621)
T 2hiv_A 14 LVPRGSHMEFKVIAEYFDKLEKISSRLQLTALLADLLSKS---DKTIIDKVVYIIQGKLWPDFLGYPELGIGEKFLIKAI 90 (621)
T ss_dssp -------CBTHHHHHHHHHHHHCCCHHHHHHHHHHHHHTS---CGGGHHHHHHHTTTCSSCGGGCCCCCCCCHHHHHHHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHhc---CchHHHHHHHHHhCCcCcccccccccCCCHHHHHHHH
Confidence 4999999999999999999999999999999999999995 78999999999999999999988 9999999999999
Q ss_pred HHHhCCCHHHHHHHHHhcCCHHHHHhhccccCC--CC--C----CCCCCCHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 003762 263 AEACGRTESHVKKQYQEMGDLGLVAKASRSSQS--MM--R----KPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKAL 334 (797)
Q Consensus 263 ~~a~G~s~~~ik~~y~~~GDlg~vA~~~r~~q~--~l--~----~~~~LTI~eV~~~L~kIA~~~G~~s~~~K~~~L~~L 334 (797)
++++|++++.+++.|+++||||+||+.+++++. ++ + ++++|||.+||+.|++||..+|++|+++|+.+|..|
T Consensus 91 ~~~~g~~~~~~~~~~~~~GDlg~~a~~~~~~~~~~~~~~f~~~~~~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~l 170 (621)
T 2hiv_A 91 SIATNTDENSVENLYKTIGDLGEVARRLKSKQQSTGILGFLGTTSKESLTVDEVYSTLSKVALTTGEGSRDLKIRLLAGL 170 (621)
T ss_dssp HHHHTCCHHHHHHHHHHHCCHHHHHHHHHHTC-------------CCCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHhcCCHHHHHHHHHhhccccccccccccCCCCCCcHHHHHHHHHHHHhccCcccHHHHHHHHHHH
Confidence 999999999999999999999999999877665 33 2 468899999999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHhhhccCcccHHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHHhhcCCchhhhHhhhhh
Q 003762 335 LVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLT 414 (797)
Q Consensus 335 L~~~t~~E~k~LiRiIlkdLRiGi~e~tvl~Ala~a~~~~~~~~~~~~~l~~~l~~a~~~vk~~y~~~pd~~~v~~~l~~ 414 (797)
|.+|++.|++||+|+|+++||||+++++|+.|||.||.... .....++++|+.+|||+.|++.+++
T Consensus 171 l~~~~~~E~k~l~Rli~~~lRiG~~~~~vl~ala~a~~~~~--------------~~~~~v~~~~~~~~dl~~v~~~l~~ 236 (621)
T 2hiv_A 171 LKKADPLEAKFLVRFVEGRLRVGIGDATVLDAMAIAFGGGQ--------------SASEIIERAYNLRADLGNIAKIIVE 236 (621)
T ss_dssp HHHSCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHSSSG--------------GGHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHcCCCccCccHHHHHHHHHHHhcccc--------------ccHHHHHHHHhcCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999986211 1234567889999999999999999
Q ss_pred cCccccCCccccCCCCCCccccccccCChHHHHhhcCCCceEEEeecceEEEEEEEecCCeEEEEecCCCccCCCcchHH
Q 003762 415 DGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVV 494 (797)
Q Consensus 415 ~g~~~l~~~~~l~~g~Pv~PMLA~~~~~i~~~l~k~~g~~~~~E~KyDG~R~qih~~~~g~V~ifSR~gkd~T~~yPel~ 494 (797)
.|+..+ .++.+++|+|++||||+++++++++++++++ +|++|+||||+|+|+|++ +|+|++|||+|+++|.+||++.
T Consensus 237 ~g~~~l-~~~~~~~~~pv~PmLA~~~~~~~~~l~~~~~-~~~~E~K~DG~R~qi~~~-g~~v~l~SR~g~~~t~~fP~l~ 313 (621)
T 2hiv_A 237 KGIEAL-KTLKPQVGIPIRPMLAERLSNPEEILKKMGG-NAIVDYKYDGERAQIHKK-EDKIFIFSRRLENITSQYPDVV 313 (621)
T ss_dssp HCGGGG-TTCCCCTTSCCCCCEEEECSCHHHHHHHTTT-CEEEEEECSSEEEEEEEE-TTEEEEECTTCCBCGGGCHHHH
T ss_pred cCcccc-ccCCCCCCCCCCCeeCCccCchhHHHhhcCC-cEEEEEEEcceeEEEEEc-CCEEEEEcCCCcCcHhhhhhHH
Confidence 998777 5799999999999999999999999988865 799999999999999995 7899999999999999999999
Q ss_pred HHHHhhcCCCCCCeEEEEEEEEEecCCCcccChhhHHhhhcccC-CccccccceEEEEeeeeecCCccccCCcHHHHHHH
Q 003762 495 LAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNV-SLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREH 573 (797)
Q Consensus 495 ~~l~~~~~~~v~~~ILDGElVa~d~~~g~~lpFq~L~~R~Rk~~-~~~~~~~~v~~~vFDILylnG~~L~~~Pl~ERr~l 573 (797)
+++.+.++ +.++|||||+|+||+++|+++||+.|++|.++.. .......+++|++|||||+||++++++||.+||++
T Consensus 314 ~~~~~~l~--~~~~iLDGElv~~d~~~g~~l~F~~L~~r~~~~~~~~~~~~~~v~~~vFDlL~l~G~~l~~~pl~eRr~~ 391 (621)
T 2hiv_A 314 DYVSKYIE--GKEFIIEGEIVAIDPESGEMRPFQELMHRKRKSDIYEAIKEYPVNVFLFDLMYYEDVDYTTKPLEARRKL 391 (621)
T ss_dssp HHHHHHBC--CSSEEEEEEEEEBCTTTCCBCCTHHHHHHHHCSCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHH
T ss_pred HHHHHhCC--CcCeEEeEEEEEeecCCCCcCCHHHHhhhccccchhhhcccCceEEEEEeccccCCCccccCCHHHHHHH
Confidence 98886664 4799999999999977888899999999932221 11123578999999999999999999999999999
Q ss_pred HHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeCCCCCCccCCCCCCCeEEEccccccccCCccceEE
Q 003762 574 LYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVP 653 (797)
Q Consensus 574 L~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~~~ds~Y~pGkRs~~WlKlK~dY~~~~~dtlDlvV 653 (797)
|++++.+. +++++++...+++.++++++|++++++|+||||+|+++.+|+|++|+|+.+|+|+|++|+++|+|++|+||
T Consensus 392 L~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~~~ds~Y~~G~Rs~~WlK~K~~~~~~~~dt~D~vV 470 (621)
T 2hiv_A 392 LESIVKPN-DYVKIAHHIQANNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVV 470 (621)
T ss_dssp HHHHBCCC-SSEEECCEEEESSHHHHHHHHHHHHHTTCCEEEEECCSTTCCCCTTCEEEEEEEEETTCTTSSCEEEEEEE
T ss_pred HHHHhCcC-CcEEEeeeEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCCCccCCCcCCCeEEEechhccCcCceeEEEE
Confidence 99999874 68999999999999999999999999999999999987789999999999999999999999999999999
Q ss_pred EeEEeCCCCcCCccceEEEEEecCCCceEEEeccccCCCCHHHHHHHHHhhccccCCCCCCCcccCCCCCCceEeccceE
Q 003762 654 IAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEV 733 (797)
Q Consensus 654 IGa~~G~Gkr~g~~gsfllg~~d~~~g~~~~vgkVGTGfSd~~l~~l~~~l~~~~~~~p~~~~~~~~~~~pdvw~eP~~V 733 (797)
||+++|+|+|+|++|+|+|||||+++++|++||||||||||+++++|++.+++++++.+ ++.++...+|+|||+|..|
T Consensus 471 iG~~~g~Gkr~g~~g~lllg~~d~~~~~l~~vgkvgtGftd~~~~~l~~~l~~~~~~~~--p~~~~~~~~~~vwv~P~~V 548 (621)
T 2hiv_A 471 VGGFYGKGKRGGKISSLLMAAYNPKTDSFESVCKVASGFSDEQLDELQKKLMEIKRDVK--HPRVNSKMEPDIWVEPVYV 548 (621)
T ss_dssp EEEEECSGGGTTSEEEEEEEEEETTTTEEEEEEEECBSCCHHHHHHHHHHHHTTEESSC--CTTEECSSCCSEEECSCCE
T ss_pred EEEEcCCCCCCCcccceEEEEEeCCCCeEEEEeeeCCCCCHHHHHHHHHHHhhhccCCC--CCCcccCCCceEEecCceE
Confidence 99999999999999999999999877899999999999999999999999999987753 2234445689999999999
Q ss_pred EEEEeeeeecCCcccccccccCCCCCceeeeceEeeEeC--CcccccCC
Q 003762 734 WEVKAADLTISPVHRAAIGVVDPDKVFTVRFSVLAHLSF--PLLFCLGN 780 (797)
Q Consensus 734 ~EV~~~eit~S~~~~aa~g~v~~~~G~sLRFPRf~riR~--~~~~~~~~ 780 (797)
|||+|+++|.||+|+||.|++++++|++||||||+|+|+ +|.+|...
T Consensus 549 ~EV~~~~~t~s~~~~a~~~~~~~~~G~sLRfPrf~r~R~DK~~~ea~t~ 597 (621)
T 2hiv_A 549 AEIIGSEITISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTT 597 (621)
T ss_dssp EEEEESEEEEETTCCTTTTTSSTTCEEEEESCEEEEECTTCCGGGSCBH
T ss_pred EEEEEEEEEcCcccccccccccCCCCceEEcCEEEEEeCCCChHHCCCH
Confidence 999999999999999999999999999999999999999 99999643
No 3
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.4e-110 Score=967.79 Aligned_cols=535 Identities=29% Similarity=0.456 Sum_probs=488.1
Q ss_pred CCccchHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcCCCC-chHHHHHHHhCccCCCccccccCCChHHHHHHHHHHh
Q 003762 188 GERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPE-DLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEAC 266 (797)
Q Consensus 188 ~~~~~F~~la~~~e~I~~tssR~~k~~iL~~~fr~~i~~~p~-dl~~~vyL~~~~l~P~~e~~elGIge~~L~kal~~a~ 266 (797)
|+-|+|..||++|++|++|++|++|+++|++||+.+ +|+ ++.+++||++|+++|+|++++||||++.|++++++++
T Consensus 1 ~~~m~~~~~a~~~~~i~~t~~r~~k~~~l~~~~~~~---~~~~~~~~~~~l~~g~~~p~~~~~~~gi~~~~l~~~~~~~~ 77 (558)
T 3gde_A 1 GSHMLFAEFAEFCERLEKISSTLELTARIAAFLQKI---EDERDLYDVVLFITGKVYPPWDERELGVGIGLLYEALENVS 77 (558)
T ss_dssp CCSCBHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTC---CSHHHHHHHHHHHTTCSSCTTSSCCCCCCHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC---CchhhHHHHHHHHcCCCCcccccceeCcChHHHHHHHHHHH
Confidence 345899999999999999999999999999999997 666 8999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCHHHHHhhc--cccCCCCCCCCCCCHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCChHH
Q 003762 267 GRTESHVKKQYQEMGDLGLVAKAS--RSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQ 344 (797)
Q Consensus 267 G~s~~~ik~~y~~~GDlg~vA~~~--r~~q~~l~~~~~LTI~eV~~~L~kIA~~~G~~s~~~K~~~L~~LL~~~t~~E~k 344 (797)
|++++.+++.|+++||||++|+.+ ++.|.+++ +++|||.+||+.|++||..+|++|+++|+.+|..||.+|++.|++
T Consensus 78 g~~~~~~~~~~~~~GDlg~~a~~~~~~~~~~~~~-~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~l~~~~~~~E~~ 156 (558)
T 3gde_A 78 GVKRSEIESMIREYGDLGLVAEQLIKKKKMTTLA-FEELTVRKVRETFDEIASLTGEGSMKRKIMLLTGLYGLATPLEAR 156 (558)
T ss_dssp CCCHHHHHHHHHHHSCHHHHHHHHHHHHHHHSCC-CCCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHCCHHHHH
T ss_pred CcCHHHHHHHHHhcCCHHHHHHHHHhhccCCCCC-CCCCcHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999999999999874 34455554 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCcccHHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHHhhcCCchhhhHhhhhhcCccccCCcc
Q 003762 345 YLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTC 424 (797)
Q Consensus 345 ~LiRiIlkdLRiGi~e~tvl~Ala~a~~~~~~~~~~~~~l~~~l~~a~~~vk~~y~~~pd~~~v~~~l~~~g~~~l~~~~ 424 (797)
||+|+|+++||||+++++|+.|||.||..++ ..+.++|+.+|||+.|++.+.+.|...+. .+
T Consensus 157 ~l~rli~~~lRiG~~~~~vl~ala~a~~~~~-----------------~~~~~~~~~~~dl~~v~~~l~~~g~~~l~-~~ 218 (558)
T 3gde_A 157 YLTRLILNEMRLGVGEGIMRDAIARAFRADP-----------------ETVERAYMITNDLGRVAVVAKKEGEEGLR-KM 218 (558)
T ss_dssp HHHHHHTTCCCSSCCHHHHHHHHHHHTTCCH-----------------HHHHHHHHHHCCHHHHHHHHHHHHHHHHH-TC
T ss_pred HHHHHHhccccccccHHHHHHHHHHHhCCCH-----------------HHHHHHhccCCchHHHHHHHhhcCccccc-cc
Confidence 9999999999999999999999999986542 23567889999999999999887876664 49
Q ss_pred ccCCCCCCccccccccCChHHHHhhcCCCceEEEeecceEEEEEEEecCCeEEEEecCCCccCCCcchHHHHHHhhcCCC
Q 003762 425 SFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPS 504 (797)
Q Consensus 425 ~l~~g~Pv~PMLA~~~~~i~~~l~k~~g~~~~~E~KyDG~R~qih~~~~g~V~ifSR~gkd~T~~yPel~~~l~~~~~~~ 504 (797)
.+++|+|++||||++++++++++++++ +|++|+||||+|+|+|++ +|+|++|||||+++|.+||++++++...++.
T Consensus 219 ~~~~~~p~~PmLA~~~~~~~~~~~~~~--~~~~E~K~DG~R~qi~~~-g~~v~l~SR~g~d~t~~fPel~~~~~~~l~~- 294 (558)
T 3gde_A 219 KIEIHIPVRMMLAQVAESLESAVREMR--TAAVEWKFDGSRVQVHWD-GSRVTIYSRRLENVTNALPDIVEEIKKSVKP- 294 (558)
T ss_dssp CCCTTSCCCCCEEEECSCHHHHHHHSS--SEEEEEECSSEEEEEEEC-SSCCEEEETTCCBCGGGCHHHHHHHHHHBCS-
T ss_pred CCCCCCCCCCeeCCcCCChHHHhhhcc--ceEEEEeEeeEEEEEEEe-CCEEEEEcCCCCcccccchHHHHHHHhhCCC-
Confidence 999999999999999999999988873 799999999999999995 7899999999999999999999998886653
Q ss_pred CCCeEEEEEEEEEecCCCcccChhhHHhhhcccCCcc--ccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCC
Q 003762 505 VRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLS--DIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEP 582 (797)
Q Consensus 505 v~~~ILDGElVa~d~~~g~~lpFq~L~~R~Rk~~~~~--~~~~~v~~~vFDILylnG~~L~~~Pl~ERr~lL~~l~~~~~ 582 (797)
++|||||+|+|+ +|+++||+.|++|.++..... ....+++|++|||||+|| ++++.||.|||++|++++.. +
T Consensus 295 --~~iLDGElv~~~--~g~~~~F~~L~~r~~~~~~~~~~~~~~pv~~~vFDlL~l~G-~l~~~pl~eRr~~L~~~~~~-~ 368 (558)
T 3gde_A 295 --GVILDGEVIAVK--EGKPMPFQHVLRRFRRKHDVAKMVEKIPLEAHFFDILYHDG-ECIDLPLRERRKLLESAVNE-S 368 (558)
T ss_dssp --SEEEEEEEEEEE--TTEEECHHHHHHHHHC--CTHHHHHHSCEEEEEEEEEEESS-BCTTSBHHHHHHHHHHHBCC-C
T ss_pred --CeEEEeEEEEcC--CCcCCCHHHHHHHhccccchhhHhhcCCeEEEEEEEEeeCC-CccCCCHHHHHHHHHHhcCC-C
Confidence 499999999993 577889999999976543221 125689999999999999 99999999999999999976 6
Q ss_pred CcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeCCCCCCccCCCCCCCeEEEccccccccCCccceEEEeEEeCCCC
Q 003762 583 GFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGK 662 (797)
Q Consensus 583 ~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~~~ds~Y~pGkRs~~WlKlK~dY~~~~~dtlDlvVIGa~~G~Gk 662 (797)
+++++++...+++.++++++|++++++|+||||+|++ +|+|++|+|+.+|+|+|+++ +++|+||||+++|+|+
T Consensus 369 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~--ds~Y~~G~Rs~~WlK~K~~~-----~t~D~vViG~~~g~Gk 441 (558)
T 3gde_A 369 EKIKLAKQIVTDSVDEVRKMYDEAISAGHEGVMIKLP--SSPYIPGKRGKNWLKVKAIM-----ETLDLVVVGGEWGEGK 441 (558)
T ss_dssp SSEEECCEEEESCHHHHHHHHHHHHHTTCCEEEEECT--TCBCCTTCEEEEEEEEESSC-----CCEEEEEEEEEECCTT
T ss_pred CeEEEeeeEecCCHHHHHHHHHHHHHcCCceeEEecC--CCCCCCCCcCCceEEEeccc-----ceEEEEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999 99999999999999999973 7999999999999999
Q ss_pred cCCccceEEEEEecCCCceEEEeccccCCCCHHHHHHHHHhhccccCCCCCCCcccCCCCCCceEeccceEEEEEeeeee
Q 003762 663 RTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLT 742 (797)
Q Consensus 663 r~g~~gsfllg~~d~~~g~~~~vgkVGTGfSd~~l~~l~~~l~~~~~~~p~~~~~~~~~~~pdvw~eP~~V~EV~~~eit 742 (797)
|+|++|+|+||+||+++|+|++||||||||||+++++|.+.++++++... .|+|||+|..||||+|++||
T Consensus 442 r~g~~g~lllg~~d~~~g~l~~vgkvgsGftd~~~~~l~~~l~~~~~~~~----------~~~vwv~P~lV~EV~~~~~t 511 (558)
T 3gde_A 442 RSHWLSSFELACLDPVTGKLLKVGRVATGFTEEDLEELTEMFRPLIVSQQ----------GKKVEFIPKYVFEVAYQEIQ 511 (558)
T ss_dssp GGGSEEEEEEEEECTTTCCEEEEEEECSSCCHHHHHHHHHHHGGGEEEEE----------TTEEEECSCCEEEEECSEEE
T ss_pred ccCccceEEEEEeeCCCCEEEEEeeeCCCCCHHHHHHHHHHHHhhcccCC----------CCcEEecCcEEEEEEEeeee
Confidence 99999999999999777899999999999999999999999998876431 58999999999999999999
Q ss_pred cCCcccccccccCCCCCceeeeceEeeEeC--CcccccCC
Q 003762 743 ISPVHRAAIGVVDPDKVFTVRFSVLAHLSF--PLLFCLGN 780 (797)
Q Consensus 743 ~S~~~~aa~g~v~~~~G~sLRFPRf~riR~--~~~~~~~~ 780 (797)
.||+|++ |++||||||+|+|+ +|++|...
T Consensus 512 ~s~~~~~---------g~~LRfPrf~r~R~DK~~~ea~t~ 542 (558)
T 3gde_A 512 KSPKYES---------GYALRFPRFVRLRDDKDVDEADTI 542 (558)
T ss_dssp ECSSSTT---------SEEEESCEEEEECTTCCGGGSCBH
T ss_pred cCCccCC---------CCEEECcEEEEEECCCChHHCCCH
Confidence 9999986 89999999999999 99999764
No 4
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=100.00 E-value=9.9e-109 Score=954.90 Aligned_cols=536 Identities=29% Similarity=0.476 Sum_probs=492.4
Q ss_pred cchHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCccCCCccccccCCChHHHHHHHHHHhCCCH
Q 003762 191 VPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTE 270 (797)
Q Consensus 191 ~~F~~la~~~e~I~~tssR~~k~~iL~~~fr~~i~~~p~dl~~~vyL~~~~l~P~~e~~elGIge~~L~kal~~a~G~s~ 270 (797)
|+|..||++|++|++|++|++|+++|++||+.+ +|+|+.+++||++|+|+|+|++++|||+++.|++++++++|+++
T Consensus 1 ~~f~~~a~~~~~l~~t~~r~~k~~~l~~~~~~~---~~~d~~~~~~ll~~~l~P~~~~~~~gi~~~~L~~~~~~~~g~~~ 77 (561)
T 2cfm_A 1 MRYLELAQLYQKLEKTTMKLIKTRLVADFLKKV---PDDHLEFIPYLILGEVFPEWDERELGVGEKLLIKAVAMATGIDA 77 (561)
T ss_dssp CBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHS---CGGGTTTHHHHHTTCSSCTTCCCCCCCCHHHHHHHHHHHHSCCH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---CchHHHHHHHHHhCCCCccccccccCCCHHHHHHHHHHHHCcCH
Confidence 789999999999999999999999999999995 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHhhccccC--CCCCCCCCCCHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCChHHHHHH
Q 003762 271 SHVKKQYQEMGDLGLVAKASRSSQ--SMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIR 348 (797)
Q Consensus 271 ~~ik~~y~~~GDlg~vA~~~r~~q--~~l~~~~~LTI~eV~~~L~kIA~~~G~~s~~~K~~~L~~LL~~~t~~E~k~LiR 348 (797)
+.+++.|+++||||+||+.+++.+ .+++ +++|||.+||+.|++||..+|++|+++|+.+|..||.+|++.|++||+|
T Consensus 78 ~~~~~~~~~~GDlg~~~~~~~~~~~~~~~~-~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~~~~~~e~~~l~r 156 (561)
T 2cfm_A 78 KEIEESVKDTGDLGESIALAVKKKKQKSFF-SQPLTIKRVYQTLVKVAETTGEGSQDKKVKYLADLFMDAEPLEAKYLAR 156 (561)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHTTTCCC-CCCCBHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHhccCcCcCcC-CCCCcHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999999999977654 3344 3789999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCcccHHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHHhhcCCchhhhHhhhhhcCccccCCccccCC
Q 003762 349 LLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTP 428 (797)
Q Consensus 349 iIlkdLRiGi~e~tvl~Ala~a~~~~~~~~~~~~~l~~~l~~a~~~vk~~y~~~pd~~~v~~~l~~~g~~~l~~~~~l~~ 428 (797)
+|+++||||+++++|+.|||.||..+. ..++++|+.+|||+.+++.+.+.|+..+. ++.+++
T Consensus 157 li~~~lriG~~~~~vl~ala~a~~~~~-----------------~~v~~~~~~~~~l~~v~~~l~~~g~~~l~-~~~~~~ 218 (561)
T 2cfm_A 157 TILGTMRTGVAEGLLRDAIAMAFHVKV-----------------ELVERAYMLTSDFGYVAKIAKLEGNEGLA-KVQVQL 218 (561)
T ss_dssp HHHTCCCCCCCHHHHHHHHHHHTTCCH-----------------HHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HCCCCT
T ss_pred HHhccccccccHHHHHHHHHHHhcCCH-----------------HHHHHHHccCCCHHHHHHHHHhccccccc-ccCCCC
Confidence 999999999999999999999986432 34577899999999999999988876664 689999
Q ss_pred CCCCccccccccCChHHHHhhcCCCceEEEeecceEEEEEEEecCCeEEEEecCCCccCCCcchHHHHHHhhcCCCCCCe
Q 003762 429 GIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSF 508 (797)
Q Consensus 429 g~Pv~PMLA~~~~~i~~~l~k~~g~~~~~E~KyDG~R~qih~~~~g~V~ifSR~gkd~T~~yPel~~~l~~~~~~~v~~~ 508 (797)
|+|++||||+++++++++++++++ +|++|+||||+|+|+|+. +|+|++|||+|+++|.+||++.+++.+.++ +.++
T Consensus 219 ~~P~~PmLA~~~~~~~~~~~~~~~-~~~~E~K~DG~R~~i~~~-~g~v~l~SR~g~~~t~~fPel~~~~~~~l~--~~~~ 294 (561)
T 2cfm_A 219 GKPIKPMLAQQAASIRDALLEMGG-EAEFEIKYDGARVQVHKD-GSKIIVYSRRLENVTRAIPEIVEALKEAII--PEKA 294 (561)
T ss_dssp TSCCCCCEEEEESCHHHHHHHTTS-CEEEEEECCSEEEEEEEE-TTEEEEECTTCCBCGGGCHHHHHHHHHHBC--SSEE
T ss_pred CCCCCCeeCCcCCChhHHHhhcCC-cEEEEEeEceEEEEEEEE-CCEEEEEeCCCCCchhhhhhHHHHHHHhCC--Ccce
Confidence 999999999999999988888764 799999999999999995 789999999999999999999998886664 4699
Q ss_pred EEEEEEEEEecCCCcccChhhHHhhhcccCCc--cccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCcEE
Q 003762 509 VLDCEIVAYDREKQKILPFQTLSTRARKNVSL--SDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQ 586 (797)
Q Consensus 509 ILDGElVa~d~~~g~~lpFq~L~~R~Rk~~~~--~~~~~~v~~~vFDILylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~ 586 (797)
|||||+|+|| ++|+++||+.|++|.++.... .....+++|++|||||+||+++++.||.+||++|++++.+. +.++
T Consensus 295 iLDGElv~~d-~~g~~~~F~~L~~r~~~~~~~~~~~~~~~~~~~vFDlL~l~g~~l~~~pl~eRr~~L~~~~~~~-~~i~ 372 (561)
T 2cfm_A 295 IVEGELVAIG-ENGRPLPFQYVLRRFRRKHNIEEMMEKIPLELNLFDVLYVDGQSLIDTKFIDRRRTLEEIIKQN-EKIK 372 (561)
T ss_dssp EEEEEEEEBC-TTSSBCCTHHHHHHHHCCSCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-SSEE
T ss_pred EeeeEEEEEc-CCCcccCHHHHHHHhhcccchhhhcccCceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhCcC-CcEE
Confidence 9999999998 678889999999997644321 12357899999999999999999999999999999999774 6899
Q ss_pred EEeEEecCCHHHHHHHHHHHHHcCCceeEEEeCCCCCCccCCCCCCCeEEEccccccccCCccceEEEeEEeCCCCcCCc
Q 003762 587 FATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGV 666 (797)
Q Consensus 587 ~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~~~ds~Y~pGkRs~~WlKlK~dY~~~~~dtlDlvVIGa~~G~Gkr~g~ 666 (797)
+++...+++.++++++|++++++|+||||+|++ +|+|++|+|+.+|+|+|++| |++|+||||+++|+|+++|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~--ds~Y~~G~Rs~~WlK~K~~~-----dt~D~vViG~~~g~Gkr~g~ 445 (561)
T 2cfm_A 373 VAENLITKKVEEAEAFYKRALEMGHEGLMAKRL--DAVYEPGNRGKKWLKIKPTM-----ENLDLVIIGAEWGEGRRAHL 445 (561)
T ss_dssp ECCEEEESCHHHHHHHHHHHHHTTCCEEEEECT--TCCCCTTCEEEEEEEECSSC-----CCEEEEEEEEEECSGGGTTS
T ss_pred EeeeEEcCCHHHHHHHHHHHHHcCCceeEEeCC--CCCCCCCCcCCCeEEEcccC-----cceeEEEEEEEeCCCCCCCc
Confidence 999999999999999999999999999999999 99999999999999999998 79999999999999999999
Q ss_pred cceEEEEEecCCCceEEEeccccCCCCHHHHHHHHHhhccccCCCCCCCcccCCCCCCceEeccceEEEEEeeeeecCCc
Q 003762 667 YGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPV 746 (797)
Q Consensus 667 ~gsfllg~~d~~~g~~~~vgkVGTGfSd~~l~~l~~~l~~~~~~~p~~~~~~~~~~~pdvw~eP~~V~EV~~~eit~S~~ 746 (797)
+|+|+|||||+++|+|++||||||||||++++++.+.++++.++. ..|++||+|..||||+|+++|.||+
T Consensus 446 ~g~lllg~~d~~~~~~~~vgkvgsGftd~~~~~l~~~l~~~~~~~----------~~~~~wv~P~~V~EV~~~~~t~s~~ 515 (561)
T 2cfm_A 446 FGSFILGAYDPETGEFLEVGKVGSGFTDDDLVEFTKMLKPLIIKE----------EGKRVWLQPKVVIEVTYQEIQKSPK 515 (561)
T ss_dssp EEEEEEEEECTTTCCEEEEEEECSSCCHHHHHHHHHHHGGGEEEE----------ETTEEEECSCCEEEEECSEEECCSS
T ss_pred cceEEEEEEeCCCCeEEEEeEeCCCCCHHHHHHHHHHHhhhcccc----------CCCeEEeCCceEEEEEEEEEEcCCc
Confidence 999999999987789999999999999999999999998876542 2689999999999999999999999
Q ss_pred ccccccccCCCCCceeeeceEeeEeC--CcccccCC
Q 003762 747 HRAAIGVVDPDKVFTVRFSVLAHLSF--PLLFCLGN 780 (797)
Q Consensus 747 ~~aa~g~v~~~~G~sLRFPRf~riR~--~~~~~~~~ 780 (797)
|+. |++||||||+|+|+ +|.+|...
T Consensus 516 ~~~---------G~~lRfPrf~r~R~DK~~~ea~t~ 542 (561)
T 2cfm_A 516 YRS---------GFALRFPRFVALRDDKGPEDADTI 542 (561)
T ss_dssp STT---------SCEEESCEEEEECTTSCGGGSCBH
T ss_pred cCC---------CCEEEccEEEEEeCCCChHHCCCH
Confidence 984 89999999999999 99999653
No 5
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=7e-107 Score=939.79 Aligned_cols=539 Identities=24% Similarity=0.413 Sum_probs=454.3
Q ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCccCCCccccccCCChHHHHHHHHHHhCC
Q 003762 189 ERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGR 268 (797)
Q Consensus 189 ~~~~F~~la~~~e~I~~tssR~~k~~iL~~~fr~~i~~~p~dl~~~vyL~~~~l~P~~e~~elGIge~~L~kal~~a~G~ 268 (797)
+.|+|.+||++|++|++|++|++|+++|++||+.+ .+++++...+|+++++|+|+|++++|||++++|+|+|++++|+
T Consensus 5 ~d~~F~~f~~l~~~ie~~s~r~~k~~il~~~~~~~--~~~~~~~~~~y~~~~~l~P~~~~~~~gi~ek~l~k~~~~~~g~ 82 (579)
T 3l2p_A 5 KDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKG--SAGDGFHGDVYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFNC 82 (579)
T ss_dssp GGGBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCC---------CCHHHHHHHHCTTTSCCCCSCCHHHHHHHHHHHHTS
T ss_pred ccCcHHHHHHHHHHHHhccChHHHHHHHHHHHHhc--CCcccccchHHHHHHHhCCCccCcccCCcHHHHHHHHHHHHCc
Confidence 57999999999999999999999999999999997 3456788889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCHHHHHhhccc--cCCCCCCCCCCCHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCChHHHH
Q 003762 269 TESHVKKQYQEMGDLGLVAKASRS--SQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYL 346 (797)
Q Consensus 269 s~~~ik~~y~~~GDlg~vA~~~r~--~q~~l~~~~~LTI~eV~~~L~kIA~~~G~~s~~~K~~~L~~LL~~~t~~E~k~L 346 (797)
+.+.+++.| +.||+|++|..... .+.....+++|||.+||+.|++||+.+|++||. .+|..|+.+|++.|+|||
T Consensus 83 ~~~~~~~~~-~~GD~~~~~~~~~~~~~~~~~~~~~~LTv~~V~~~L~~ia~~~g~~sq~---~~l~~l~~~~~~~E~k~l 158 (579)
T 3l2p_A 83 NPDDMARDL-EQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQ---QALQDIASRCTANDLKCI 158 (579)
T ss_dssp CHHHHHHHG-GGSCHHHHHHHHHHSCSSSCCCSSCCCBHHHHHHHHHHHHTCCSHHHHH---HHHHHHHTTCCSHHHHHH
T ss_pred CHHHHHHHH-HcCCHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHhccCcHHHH---HHHHHHHHhCCHHHHHHH
Confidence 999999999 68999998866422 222222357999999999999999998877764 689999999999999999
Q ss_pred HHHHhhhccCcccHHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHHhhcCCchhhhHhhhhhc--------Ccc
Q 003762 347 IRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTD--------GVW 418 (797)
Q Consensus 347 iRiIlkdLRiGi~e~tvl~Ala~a~~~~~~~~~~~~~l~~~l~~a~~~vk~~y~~~pd~~~v~~~l~~~--------g~~ 418 (797)
+|+|+++||||++++||+.|||+++ .++|+.++|++.||..++.. |+.
T Consensus 159 ~R~i~~~lriG~~e~~vl~a~~~~a------------------------~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~ 214 (579)
T 3l2p_A 159 IRLIKHDLKMNSGAKHVLDALDPNA------------------------YEAFKASRNLQDVVERVLHNAQEVEKEPGQR 214 (579)
T ss_dssp HHHHTTCCSSSCCHHHHHHTTCTTH------------------------HHHHHHSCCHHHHHHHHHHHHHSCC------
T ss_pred HHHHHhhhhcccchhHHHHHhCHHH------------------------HHHHhhcCCHHHHHHHHHhhchhhhcccccc
Confidence 9999999999999999999997532 24688899999999877643 333
Q ss_pred ccCCccccCCCCCCccccccccCChHHHHhhcCCCceEEEeecceEEEEEEEecCCeEEEEecCCCccCCCcchHHH---
Q 003762 419 NLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVL--- 495 (797)
Q Consensus 419 ~l~~~~~l~~g~Pv~PMLA~~~~~i~~~l~k~~g~~~~~E~KyDG~R~qih~~~~g~V~ifSR~gkd~T~~yPel~~--- 495 (797)
.+. .+.+++|+||+||||+++++++++++++++ .|++|+||||+|+|+|++ +|+|++|||||+++ ||++.+
T Consensus 215 ~~~-~~~~~~~~pv~PMLA~~~~~~~~~~~~~~~-~~~~E~K~DG~R~qih~~-g~~v~l~SR~g~~~---~p~~~~~l~ 288 (579)
T 3l2p_A 215 RAL-SVQASLMTPVQPMLAEACKSVEYAMKKCPN-GMFSEIKYDGERVQVHKN-GDHFSYFSRSLKPV---LPHKVAHFK 288 (579)
T ss_dssp --C-CCCCCTTSCCCCCEEEECCCHHHHHHHCTT-CEEEEECCCSEEEEEEEE-TTEEEEECTTSCBC---CGGGTTTGG
T ss_pred ccc-ccccCCCCCCCCccCCcCCCHHHHHhhCCC-CeEEEEccCcEEEEEEEE-CCEEEEECCCCCcc---ChhHHHHHH
Confidence 332 367889999999999999999999988865 799999999999999995 78999999999998 466433
Q ss_pred -HHHhhcCCCCCCeEEEEEEEEEecCCCcccChhhHHhhhcccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHH
Q 003762 496 -AVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHL 574 (797)
Q Consensus 496 -~l~~~~~~~v~~~ILDGElVa~d~~~g~~lpFq~L~~R~Rk~~~~~~~~~~v~~~vFDILylnG~~L~~~Pl~ERr~lL 574 (797)
.+.+.++ +..++|||||+|+||+++|+++|||.|+.+.++.. ...+++|++|||||+||++|+++||.|||++|
T Consensus 289 ~~l~~~~~-~~~~~iLDGElv~~d~~~g~~~~F~~L~~~~~~~~----~~~~v~~~vFDlL~l~G~~L~~~Pl~eRr~~L 363 (579)
T 3l2p_A 289 DYIPQAFP-GGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAF----QDANVCLFVFDCIYFNDVSLMDRPLCERRKFL 363 (579)
T ss_dssp GTHHHHST-TCSEEEEEEEEEEBCTTTCCBCCGGGGSHHHHHHC----SSCCEEEEEEEEEEETTEECTTSCHHHHHHHH
T ss_pred HHHHHhcC-cCCceEEEeEEEEEeCCCCcccCHHHHHHHhhhhc----ccCCeEEEEEEeeccCCCccccCCHHHHHHHH
Confidence 3334443 35789999999999988888899999987755432 13689999999999999999999999999999
Q ss_pred HHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeCCCCCCccCCCCCCCeEEEccccccc--cCCccceE
Q 003762 575 YDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIES--IGDSLDLV 652 (797)
Q Consensus 575 ~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~~~ds~Y~pGkRs~~WlKlK~dY~~~--~~dtlDlv 652 (797)
++++.+.++++++++...+.+.++++++|++++++|+||||+|++ +|+|+||+| +|+|+|++|+++ +++++|+|
T Consensus 364 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~a~~~g~EGlv~K~~--ds~Y~~Grr--~WlK~K~~y~~~g~~~~t~D~v 439 (579)
T 3l2p_A 364 HDNMVEIPNRIMFSEMKRVTKALDLADMITRVIQEGLEGLVLKDV--KGTYEPGKR--HWLKVKKDYLNEGAMADTADLV 439 (579)
T ss_dssp HHHCCCBTTTEEECCEEEECSHHHHHHHHHHHHHTTCCCEEEEES--SCCCCTTCE--EEEEECTTTCC---CCEEEEEE
T ss_pred HHHhhcCCCeEEEeeeEEcCCHHHHHHHHHHHHHhCCCceEEecC--cCCCCCCCe--eeEEEechhhccccccccccEE
Confidence 999998888999999888889999999999999999999999999 999999988 899999999987 88999999
Q ss_pred EEeEEeCCCCcCCccceEEEEEecCCCceEEEeccccCCCCHHHHHHHHHhhccccCCCC----CCCcccCCCCCCceEe
Q 003762 653 PIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKP----RPYYRFADTISPDVWF 728 (797)
Q Consensus 653 VIGa~~G~Gkr~g~~gsfllg~~d~~~g~~~~vgkVGTGfSd~~l~~l~~~l~~~~~~~p----~~~~~~~~~~~pdvw~ 728 (797)
|||+++|+|+|+|++|+|+|||||+++++|++||||||||||+++++|.+.++++.++.+ +.|+++.....||+|+
T Consensus 440 ViG~~~G~Gkr~g~~g~lllg~~d~~~~~l~~vgkvgtGftd~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~pd~~~ 519 (579)
T 3l2p_A 440 VLGAFYGQGSKGGMMSIFLMGCYDPGSQKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNKIYYPDFIV 519 (579)
T ss_dssp EEEEECCCTTSCSSCCEEEEEEECTTTSSEEEEEEECTTCCHHHHHHTTTSSCCCCCCC---------------------
T ss_pred EEEEEeCCCCCCCceeEEEEEEEeCCCCeEEEecCccCCCCHHHHHHHHHHhhccccccCCccCCceeecCCCCCCcEEE
Confidence 999999999999999999999999877899999999999999999999999999887653 3467766667899998
Q ss_pred -cc--ceEEEEEeeeeecCCcccccccccCCCCCceeeeceEeeEeC--CcccccCC
Q 003762 729 -EP--TEVWEVKAADLTISPVHRAAIGVVDPDKVFTVRFSVLAHLSF--PLLFCLGN 780 (797)
Q Consensus 729 -eP--~~V~EV~~~eit~S~~~~aa~g~v~~~~G~sLRFPRf~riR~--~~~~~~~~ 780 (797)
+| ..||||+|++|+.||+|++ +|+|||||||+|+|+ +|++|...
T Consensus 520 ~~P~~~~V~Ei~~~~i~~S~~~~~--------~G~sLRFPR~~riR~DK~~~ea~t~ 568 (579)
T 3l2p_A 520 PDPKKAAVWEITGAEFSKSEAHTA--------DGISIRFPRCTRIRDDKDWKSATNL 568 (579)
T ss_dssp -----CEEEEEEESCEEECTTSSS--------TTEEESSCEECCCCSSCCSSSSCBH
T ss_pred ecCCCCeEEEEEeeEEeecCCccc--------CCEEEECCeEEEEeCCCChHHCCCH
Confidence 66 6999999999999999986 499999999999999 99999764
No 6
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6.9e-65 Score=549.40 Aligned_cols=302 Identities=24% Similarity=0.311 Sum_probs=253.6
Q ss_pred cCCCCCCccccccccCChHHHHhhcCCCceEEEeecceEEEEEEEecCCeEEEEecCCCccCCCcchHHHHHHhhcCCCC
Q 003762 426 FTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSV 505 (797)
Q Consensus 426 l~~g~Pv~PMLA~~~~~i~~~l~k~~g~~~~~E~KyDG~R~qih~~~~g~V~ifSR~gkd~T~~yPel~~~l~~~~~~~v 505 (797)
.++|.|++||||++++ +++ +.+.+|++|+||||+|+|+|++ +|+|++|||+|+++|.+||++.+++..+ + .
T Consensus 3 ~~~~~p~~PmLA~~~~-~~~----~~~~~~~~E~K~DG~R~~~~~~-~g~v~l~SR~g~~~t~~fPel~~~~~~l-~--~ 73 (310)
T 1vs0_A 3 VFEFDNLAPMLATHGT-VAG----LKASQWAFEGXWDGYRLLVEAD-HGAVRLRSRSGRDVTAEYPQLRALAEDL-A--D 73 (310)
T ss_dssp -CCGGGCCCCEEEECC-CTT----CCTTTEEEEEECCSEEEEEEEE-TTEEEEEETTCCBCGGGCGGGHHHHHHT-T--T
T ss_pred CCCCCCccCeECCCcC-CCc----cCCCCEEEEEccCcEEEEEEEE-CCEEEEEcCCCCCchhhchhHHHHHHhC-C--C
Confidence 4688999999999875 321 2356899999999999999995 7899999999999999999998866543 3 2
Q ss_pred CCeEEEEEEEEEecCCCcccChhhHHhhhcccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCcE
Q 003762 506 RSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFF 585 (797)
Q Consensus 506 ~~~ILDGElVa~d~~~g~~lpFq~L~~R~Rk~~~~~~~~~~v~~~vFDILylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i 585 (797)
.++|||||||++|. +|+ .+|+.|++|.++. +++|++||||++||++++++||.+|+++|++++.+. .+
T Consensus 74 ~~~iLDGElv~~d~-~g~-~~F~~l~~r~~~~--------~~~~~vFDll~~~g~~l~~~pl~eRr~~L~~~~~~~--~i 141 (310)
T 1vs0_A 74 HHVVLDGEAVVLDS-SGV-PSFSQMQNRGRDT--------RVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANAT--SL 141 (310)
T ss_dssp CEEEEEEEEECBCT-TSC-BCHHHHHTCCTTS--------CCEEEEEEEEEETTEECTTSCHHHHHHHHHHHHHHS--CC
T ss_pred ccEEEeeEEEEECC-CCC-cCHHHHHhhccCC--------cEEEEEEEeEEECCcCcccCCHHHHHHHHHHhccCC--cE
Confidence 58999999999986 354 4999999988653 489999999999999999999999999999998753 56
Q ss_pred EEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeCCCCCCccCCCCCCCeEEEccccccccCCccceEEEeEEeCCCCcCC
Q 003762 586 QFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTG 665 (797)
Q Consensus 586 ~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~~~ds~Y~pGkRs~~WlKlK~dY~~~~~dtlDlvVIGa~~G~Gkr~g 665 (797)
++++.... +++++|++++++|+||||+|++ +|+|++|+|+.+|+|+|++| ++|+||+|+++|+|+++|
T Consensus 142 ~~~~~~~~----~~~~~~~~~~~~g~EGlv~K~~--ds~Y~~G~Rs~~WlK~K~~~------~~D~vv~G~~~g~G~r~g 209 (310)
T 1vs0_A 142 TVPELLPG----DGAQAFACSRKHGWEGVIAKRR--DSRYQPGRRCASWVKDKHWN------TQEVVIGGWRAGEGGRSS 209 (310)
T ss_dssp CCCCCCCS----SHHHHHHHHHHTTCCEEEEEET--TCCCCTTCEEEEEEEEESSE------EEEEEEEEEEC-------
T ss_pred EECccCch----HHHHHHHHHHHcCCceEEEeCC--CCCcCCCCcChHHhccchhe------EEEEEEEEEEcCCCCccC
Confidence 66655432 4899999999999999999999 99999999999999999997 899999999999999999
Q ss_pred ccceEEEEEecCCCceEEEeccccCCCCHHHHHHHHHhhccccCCCCCCCcc-c-CCCCCCceEeccceEEEEEeeeeec
Q 003762 666 VYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYR-F-ADTISPDVWFEPTEVWEVKAADLTI 743 (797)
Q Consensus 666 ~~gsfllg~~d~~~g~~~~vgkVGTGfSd~~l~~l~~~l~~~~~~~p~~~~~-~-~~~~~pdvw~eP~~V~EV~~~eit~ 743 (797)
.+|+|+||+||++ | +++||+|||||||+++++|++.++++.++.| +|.. . +...+|++||+|.+||||+|+++|.
T Consensus 210 ~~g~lllg~~d~~-g-~~~vgkvgtGftd~~~~~l~~~l~~~~~~~~-p~~~~~~~~~~~~~~wv~P~~V~ev~~~~~t~ 286 (310)
T 1vs0_A 210 GVGSLLMGIPGPG-G-LQFAGRVGTGLSERELANLKEMLAPLHTDES-PFDVPLPARDAKGITYVKPALVAEVRYSEWTP 286 (310)
T ss_dssp -CCEEEEEEEETT-E-EEEEEEECSSCCHHHHHHHHHHHGGGBCSSC-SBSSCCCHHHHTTEEEBCTTCEEEEEESCBCT
T ss_pred ccceEEEEEEcCC-C-CEEEEEECCCCCHHHHHHHHHHHHhhccCCC-CccccCCcccCCCCEEEcCCEEEEEEEEEEcC
Confidence 9999999999864 5 9999999999999999999999999987654 3321 1 1234689999999999999999984
Q ss_pred CCcccccccccCCCCCceeeeceEeeEeC--Cccccc
Q 003762 744 SPVHRAAIGVVDPDKVFTVRFSVLAHLSF--PLLFCL 778 (797)
Q Consensus 744 S~~~~aa~g~v~~~~G~sLRFPRf~riR~--~~~~~~ 778 (797)
+++||||||+|+|+ +|.+|.
T Consensus 287 ---------------~g~lRfP~f~r~R~DK~~~~~~ 308 (310)
T 1vs0_A 287 ---------------EGRLRQSSWRGLRPDKKPSEVV 308 (310)
T ss_dssp ---------------TSCBTTCEEEEECTTSCGGGCC
T ss_pred ---------------CCeEEceEEEEEeCCCCHHHhC
Confidence 57899999999999 999884
No 7
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1
Probab=100.00 E-value=6.4e-59 Score=510.12 Aligned_cols=306 Identities=17% Similarity=0.144 Sum_probs=253.6
Q ss_pred ccccCCCCCCccccccccCChHHHHhhcCCCceEEEeecceEEEEEEEecCCeEEEEecCCCccCC------CcchHHHH
Q 003762 423 TCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTG------KFPDVVLA 496 (797)
Q Consensus 423 ~~~l~~g~Pv~PMLA~~~~~i~~~l~k~~g~~~~~E~KyDG~R~qih~~~~g~V~ifSR~gkd~T~------~yPel~~~ 496 (797)
+|.++||+|++|||+ ++.++++.. ..|++|+||||+|||+|++.+|+|++|||+|++++. .||++.++
T Consensus 2 ~~~~~~~~pv~pmL~----~~~~~l~~~--~~~~~E~K~DG~R~~~~~~~~g~v~l~SR~g~~~~~l~~~~~~~p~~~~~ 75 (348)
T 1a0i_A 2 NIKTNPFKAVSFVES----AIKKALDNA--GYLIAEIKYDGVRGNICVDNTANSYWLSRVSKTIPALEHLNGFDVRWKRL 75 (348)
T ss_dssp TTCCCCEEEEECCHH----HHHHHHHHH--SSEEEEECCCSEEEEEEEETTSEEEEECTTSCBCGGGGGGCEECHHHHHH
T ss_pred eeeccCCCcCchhhh----cHHHHHhhc--CcEEEEEeeceeEEEEEEeCCCeEEEEcCCCCCCcchhhhhcccchHHHH
Confidence 478999999999994 355666554 379999999999999999657899999999999876 78999998
Q ss_pred HHhhcCCCCCCeEEEEEEEEEecCCCcccChhhHHhhhcc------cC-----------Cc------cccccceEEEEee
Q 003762 497 VSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARK------NV-----------SL------SDIKVDVCIYAFD 553 (797)
Q Consensus 497 l~~~~~~~v~~~ILDGElVa~d~~~g~~lpFq~L~~R~Rk------~~-----------~~------~~~~~~v~~~vFD 553 (797)
+...+.....++|||||+|+++ .||+.|++|.++ ++ .. .....+++|++||
T Consensus 76 l~~~~~~~~~~~iLDGElv~~~------~~F~~l~~~~~~k~~~~k~v~~~~~~~r~~~~~~~~i~~~~~~~~~~~~vFD 149 (348)
T 1a0i_A 76 LNDDRCFYKDGFMLDGELMVKG------VDFNTGSGLLRTKWTDTKNQEFHEELFVEPIRKKDKVPFKLHTGHLHIKLYA 149 (348)
T ss_dssp HHSTTCCCTTEEEEEEEEEESS------SCTTTHHHHHHCCSCCSSBSSCC--------CCCSCCCCCBCTTTEEEEEEE
T ss_pred HhhhhccCCCCEEEEEEEEEeC------CCHHHHHHHhcccccccccccccccccccccccccccccccccCcEEEEEEe
Confidence 8864322235899999999973 499999999652 11 11 1235689999999
Q ss_pred eeecC----Cccc---cCCcHHHHHHHHHHhhccCC-CcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeCCCCCCc
Q 003762 554 ILYRN----GQPL---LQEQLRVRREHLYDSFEEEP-GFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATY 625 (797)
Q Consensus 554 ILyln----G~~L---~~~Pl~ERr~lL~~l~~~~~-~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~~~ds~Y 625 (797)
||++| |+++ +++||.+|+++|++++...+ ..+++++...+++.++++++|++++++|+||||+|++ +|+|
T Consensus 150 ll~l~~~~~G~~l~~~~~~pl~eRr~~L~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~--ds~Y 227 (348)
T 1a0i_A 150 ILPLHIVESGEDCDVMTLLMQEHVKNMLPLLQEYFPEIEWQAAESYEVYDMVELQQLYEQKRAEGHEGLIVKDP--MCIY 227 (348)
T ss_dssp EEEHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCTTSEEEECCEEEESSHHHHHHHHHHHHTTTCCCEEEECT--TCEE
T ss_pred eEeeCCCCCCccchhhccCCHHHHHHHHHHHhhhCCCCeEEEeccEecCCHHHHHHHHHHHHHcCCceEEEeCC--CCCC
Confidence 99999 9998 89999999999999987654 4788999999999999999999999999999999999 9999
Q ss_pred cCCCCCCCeEEEccccccccCCccceEEEeEEeCCCCc--CCccceEEEEEecCCCceEEEeccccCCCCHHHHHHHHHh
Q 003762 626 EPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKR--TGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSS 703 (797)
Q Consensus 626 ~pGkRs~~WlKlK~dY~~~~~dtlDlvVIGa~~G~Gkr--~g~~gsfllg~~d~~~g~~~~vgkVGTGfSd~~l~~l~~~ 703 (797)
++|+|+. |+|+|++| ++|+||||+++|+|+| +|++|+|+|. ++ +|+|++ ||||||+++++|++.
T Consensus 228 ~~Grr~~-wlK~K~~~------~~D~vViG~~~g~g~r~~~g~~~~~~~~-~~--~g~~~~----gtGftd~~~~~l~~~ 293 (348)
T 1a0i_A 228 KRGKKSG-WWKMKPEN------EADGIIQGLVWGTKGLANEGKVIGFEVL-LE--SGRLVN----ATNISRALMDEFTET 293 (348)
T ss_dssp CSEEEEE-EEEESCCE------EEEEEEEEEECCCTTTSSCSSCCEEEEE-CT--TSCEEE----EBCCCSHHHHHHHHH
T ss_pred CCCCccC-cEEEeecc------cEEEEEEEEEeCCCCccCCceEEEEEEE-eC--CCCEEE----ccCCCHHHHHHHHHH
Confidence 9998875 99999998 9999999999999987 8999999985 33 477763 699999999999999
Q ss_pred hccccCCCCCCCcccCCCCCCceEeccc--eEEEEEeeeeecCCcccccccccCCCCCceeeeceEeeEe
Q 003762 704 LRSKVIPKPRPYYRFADTISPDVWFEPT--EVWEVKAADLTISPVHRAAIGVVDPDKVFTVRFSVLAHLS 771 (797)
Q Consensus 704 l~~~~~~~p~~~~~~~~~~~pdvw~eP~--~V~EV~~~eit~S~~~~aa~g~v~~~~G~sLRFPRf~riR 771 (797)
++++++..+.+.+......++++|++|. .||||+|+++|.+ | +||||||+|+|
T Consensus 294 l~~~~~~~~~~~~~~~~~~~~~~wv~P~~g~v~eV~~~~~t~~--------------G-~lRfP~f~~~R 348 (348)
T 1a0i_A 294 VKEATLSQWGFFSPYGIGDNDACTINPYDGWACQISYMEETPD--------------G-SLRHPSFVMFR 348 (348)
T ss_dssp HHHHHTTTSCCC--------CCCCCCTTTTCEEEEEESEECTT--------------S-CEESCEEEEEC
T ss_pred HhhhccccCCCcccccCCCCCcEEEcCCCcEEEEEEeeeecCC--------------C-ceECCeEeEeC
Confidence 9988754333333333345789999999 9999999999952 5 99999999998
No 8
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A*
Probab=100.00 E-value=5.8e-50 Score=430.40 Aligned_cols=259 Identities=18% Similarity=0.200 Sum_probs=217.0
Q ss_pred CCccccccccCChHHHHhhcCCCceEEEeecceEEEEEEEecCCeEEEEecCCCccCCCcchHHHHHHhhcCCCCCCeEE
Q 003762 431 PIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVL 510 (797)
Q Consensus 431 Pv~PMLA~~~~~i~~~l~k~~g~~~~~E~KyDG~R~qih~~~~g~V~ifSR~gkd~T~~yPel~~~l~~~~~~~v~~~IL 510 (797)
+++||||++++...+ .+.+|++|+||||+|||+ +| ++|||+|+++|. |+|.+.+.+.+ ++||
T Consensus 2 ~~~PmLA~~~~~~~~-----~~~~~~~E~K~DG~R~~~----~g--~l~SR~g~~~t~--p~l~~~~~~~~-----~~iL 63 (297)
T 1fvi_A 2 ITKPLLAATLENIED-----VQFPCLATPKIAGIRSVK----QT--QMLSRTFKPIRN--SVMNRLLTELL-----PEGS 63 (297)
T ss_dssp CSSCCBCEECCCGGG-----CCSSEEEEECCCSEEEEE----SS--SEECTTSCBCSC--HHHHHHHHHHS-----CTTE
T ss_pred CcCceeCCccCcCcC-----CCCcEEEEeeEeeeeEEe----cC--EEECCCCcccCc--HHHHHHHHhcC-----CeeE
Confidence 689999999887521 145799999999999997 45 999999999996 99888777653 7899
Q ss_pred EEEEEEEecCCCcccChhhHHhhhcccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCC-----cE
Q 003762 511 DCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPG-----FF 585 (797)
Q Consensus 511 DGElVa~d~~~g~~lpFq~L~~R~Rk~~~~~~~~~~v~~~vFDILylnG~~L~~~Pl~ERr~lL~~l~~~~~~-----~i 585 (797)
|||+|+.. .+|+.+++|.++.... ...+++|++|||||+| ++.||.+|+++|++++.+.+. .+
T Consensus 64 DGElv~~~------~~F~~l~~~~~~~~~~--~~~~~~~~vFDll~l~----~~~pl~eRr~~L~~~~~~~~~~~~~~~i 131 (297)
T 1fvi_A 64 DGEISIEG------ATFQDTTSAVMTGHKM--YNAKFSYYWFDYVTDD----PLKKYIDRVEDMKNYITVHPHILEHAQV 131 (297)
T ss_dssp EEEEECTT------SCHHHHHHHHHSCC------CCEEEEEEEECSSC----TTSCHHHHHHHHHHHHHHCGGGGGCSSE
T ss_pred EEEEEECC------CCHHHHHHHhccCCCC--CccceEEEEEeccCCC----CCCCHHHHHHHHHHHHhhcCCccccceE
Confidence 99999931 4799999998765321 3578999999999998 789999999999999976542 78
Q ss_pred EEEe--EEecCCHHHHHHHHHHHHHcCCceeEEEeCCCCCCccCCCCCC----CeEEEccccccccCCccceEEEeEEeC
Q 003762 586 QFAT--TLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSL----NWLKLKKDYIESIGDSLDLVPIAAFHG 659 (797)
Q Consensus 586 ~~v~--~~~~~~~eei~~~f~~ai~~g~EGlmvK~~~~ds~Y~pGkRs~----~WlKlK~dY~~~~~dtlDlvVIGa~~G 659 (797)
++++ ...+++.++++++|++++++|+||||+|++ +|+|++| |+. +|+|+|+++ ++|+||||+++|
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~--ds~Y~~G-Rs~~~~g~wlK~K~~~------~~d~vVig~~~g 202 (297)
T 1fvi_A 132 KIIPLIPVEINNITELLQYERDVLSKGFEGVMIRKP--DGKYKFG-RSTLKEGILLKMKQFK------DAEATIISMTAL 202 (297)
T ss_dssp EEEECCCEEECSHHHHHHHHHHHHHTTCCSEEEECT--TCCCCSS-BCCTTTTSSEEECCCE------EEEEEEEEEEES
T ss_pred EEcCcceEecCCHHHHHHHHHHHHHCCCcEEEEECC--CCCcCCC-CCCCCCCCeEEECCCC------CEEEEEEEEEeC
Confidence 9999 888899999999999999999999999999 9999999 888 999999986 899999999999
Q ss_pred ---------------------CCCc-CCccceEEEEEecCCCceEEEeccccCCCCHHHHHHHHHhhccccCCCCCCCcc
Q 003762 660 ---------------------RGKR-TGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYR 717 (797)
Q Consensus 660 ---------------------~Gkr-~g~~gsfllg~~d~~~g~~~~vgkVGTGfSd~~l~~l~~~l~~~~~~~p~~~~~ 717 (797)
+|++ .|++|+|+|+.. | .+|+|||||||+++++|++...+. .
T Consensus 203 ~~~~~~~~~~~~g~~~r~~~~~G~~~~g~~g~ll~~~~----g---~~~~vgtGftd~~~~~l~~~~~p~--------~- 266 (297)
T 1fvi_A 203 FKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYD----G---VVFSIGTGFDADQRRDFWQNKESY--------I- 266 (297)
T ss_dssp CC-------------------CCCTTCCCEEEEEECST----T---CCEEECSSCCHHHHHHHHHTHHHH--------T-
T ss_pred ccccccccccccccccccccCCCcccCCcEEEEEEccC----C---eEEEECCCCCHHHHHHHHhhcCcc--------c-
Confidence 9998 899999999852 4 367999999999999998864321 1
Q ss_pred cCCCCCCceEeccceEEEEEeeeeecCCcccccccccCCCCCceeeeceEeeEeC
Q 003762 718 FADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKVFTVRFSVLAHLSF 772 (797)
Q Consensus 718 ~~~~~~pdvw~eP~~V~EV~~~eit~S~~~~aa~g~v~~~~G~sLRFPRf~riR~ 772 (797)
..|+||+|+++|.+ | +||||||+|+|+
T Consensus 267 -------------g~v~ev~~~~~t~~--------------g-~lRfP~f~r~R~ 293 (297)
T 1fvi_A 267 -------------GKMVKFKYFEMGSK--------------D-CPRFPVFIGIRH 293 (297)
T ss_dssp -------------TCEEEEEEECC--------------------CEEEEEEEEC-
T ss_pred -------------CcEEEEEEEEeCCC--------------C-CccCCeEEEEEc
Confidence 24999999999853 4 799999999998
No 9
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=100.00 E-value=2.6e-36 Score=315.01 Aligned_cols=207 Identities=22% Similarity=0.321 Sum_probs=172.2
Q ss_pred CCccchHHHHHHHHHHHhccchHHHHHHHHHHHHhhhc------CCCCchHHHHHHHhCccCCCcc--ccccCCChHHHH
Q 003762 188 GERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVME------TTPEDLVPVVYLAANKIAPAHE--GLELGIGDASII 259 (797)
Q Consensus 188 ~~~~~F~~la~~~e~I~~tssR~~k~~iL~~~fr~~i~------~~p~dl~~~vyL~~~~l~P~~e--~~elGIge~~L~ 259 (797)
+++|||++||++|++|++|++|++|+++|++||+.++. .+++++...+|+++++++|+|+ +++||||++.|+
T Consensus 11 ~~~~~F~~l~~~~e~Ie~ts~rl~k~~il~~f~~~~~~~~~~l~~~~~~~~~dly~~l~ll~P~~d~~r~~ygi~e~~L~ 90 (240)
T 4htp_A 11 ASHVPFADLCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERERMAYGIKETMLA 90 (240)
T ss_dssp GGTSBHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCSHHHHHHHSGGGCCSSCCCCCCHHHHH
T ss_pred ccCCcHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccccccCcccCcchHHHHHHHhCccccccccccCCCHHHHH
Confidence 46899999999999999999999999999999999864 3344444445556666789997 559999999999
Q ss_pred HHHHHHhCCCHHHHH-----------HHHHhcCCHHHHHhhccccCCCCCCCCCCCHHHHHHHHHHHHHHhCCChHHHHH
Q 003762 260 KALAEACGRTESHVK-----------KQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKK 328 (797)
Q Consensus 260 kal~~a~G~s~~~ik-----------~~y~~~GDlg~vA~~~r~~q~~l~~~~~LTI~eV~~~L~kIA~~~G~~s~~~K~ 328 (797)
|+|++++|++.+.++ ..|.+.||||+||+.+.+++.. .+++|||.+||+.|++||..+|++++++|+
T Consensus 91 Kai~~~~g~~~~~~~~~~L~~wk~~~~~~~~~GDlg~va~~~~~~r~~--~~~~LTv~~V~~~L~~IA~~~g~~s~~~k~ 168 (240)
T 4htp_A 91 KLYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLKPRCL--QKGSLTIQQVNDLLDSIASNNSAKRKDLIK 168 (240)
T ss_dssp HHHHHHTTCCTTSHHHHHHHTC----------CCHHHHHHHHHTTSSC--CSCCCBHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHCCCcchHHHHHHHhccccccccccCCCHHHHHHHHHHccCC--CCCCcCHHHHHHHHHHHHHhhCcccHHHHH
Confidence 999999999987766 6688899999999986544332 237899999999999999999999999999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHhhhccCcccHHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHHhhcCCchhhh
Q 003762 329 NRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKI 408 (797)
Q Consensus 329 ~~L~~LL~~~t~~E~k~LiRiIlkdLRiGi~e~tvl~Ala~a~~~~~~~~~~~~~l~~~l~~a~~~vk~~y~~~pd~~~v 408 (797)
.+|..||.+|++.|+|||+|+|+++||||+++++|+.|||.. +.++|+.++|++.|
T Consensus 169 ~~l~~Ll~~~t~~E~k~liRiil~~lriG~~e~~vl~a~h~~------------------------~~~a~~~~~dL~~V 224 (240)
T 4htp_A 169 KSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHND------------------------AAELHNVTTDLEKV 224 (240)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHTCCCCSSCHHHHHHHHCTT------------------------HHHHHHHHCCHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHhcccccCccHhHHHHHhChh------------------------HHHHHHhhCCHHHH
Confidence 999999999999999999999999999999999999998542 13579999999999
Q ss_pred HhhhhhcCccccC
Q 003762 409 VPALLTDGVWNLS 421 (797)
Q Consensus 409 ~~~l~~~g~~~l~ 421 (797)
|..+. .|...|.
T Consensus 225 ~~~l~-~~~~~L~ 236 (240)
T 4htp_A 225 CRQLH-DPSVGLS 236 (240)
T ss_dssp HHHTC-STTSCTT
T ss_pred HHHHh-CchhhHh
Confidence 99887 5554443
No 10
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3
Probab=100.00 E-value=1.8e-34 Score=321.43 Aligned_cols=246 Identities=19% Similarity=0.208 Sum_probs=185.8
Q ss_pred cCCCceEEEeecceEEEEEEEe----cCCeEEEEecCCCccC---CCcchHHHHHHhhcCCCCCCeEEEEEEEEEecCCC
Q 003762 450 FQDMEFTCEYKYDGERAQIHYL----EDGSVEIYSRNAERNT---GKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQ 522 (797)
Q Consensus 450 ~~g~~~~~E~KyDG~R~qih~~----~~g~V~ifSR~gkd~T---~~yPel~~~l~~~~~~~v~~~ILDGElVa~d~~~g 522 (797)
+...+|++|+||||+|+|+|+. .+|.+.++||+|++++ ..||++.++++.. .....++|||||||+++...
T Consensus 57 l~~~~~~ve~K~DG~R~ll~~~~~~~~g~~v~L~sR~~~~~~i~~~~FP~~~~~~~~~-~~~~~~~vLDGElV~~~~~~- 134 (395)
T 1p16_A 57 LMQKDYFVCEKTDGLRCLLFLINDPDKGEGVFLVTRENDYYFIPNIHFPLSVNETREK-PTYHHGTLLDGELVLENRNV- 134 (395)
T ss_dssp HHHSCEEEEEEECSEEEEEEEEEETTTEEEEEEEETTCCEEECCSCCCCSCTTCCSSS-CCCCSSEEEEEEEEEECCSS-
T ss_pred hCcCCEEEEECccceEEEEEEeecccCCCEEEEEeCCCceEEeccccCCcccccccch-hccCCcceeeeEEEEeccCC-
Confidence 4445799999999999999983 2467999999999964 5899987643210 11236899999999985311
Q ss_pred cccChhhHHhhhcccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhh-ccC----------------CCcE
Q 003762 523 KILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSF-EEE----------------PGFF 585 (797)
Q Consensus 523 ~~lpFq~L~~R~Rk~~~~~~~~~~v~~~vFDILylnG~~L~~~Pl~ERr~lL~~l~-~~~----------------~~~i 585 (797)
...+++|++||||++||++|+++||.+|+++|++++ .+. +-.+
T Consensus 135 --------------------~~~~~~f~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~~~~~~~~~~~~~~~~~~~pf~v 194 (395)
T 1p16_A 135 --------------------SEPVLRYVIFDALAIHGKCIIDRPLPKRLGYITENVMKPFDNFKKHNPDIVNSPEFPFKV 194 (395)
T ss_dssp --------------------SCCEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHTHHHHHHHHHHCHHHHSCTTSCCEE
T ss_pred --------------------CcceeEEEEEEEEEECCeEcccCCHHHHHHHHHHHhhcccHhhhhcCccccccccCceEE
Confidence 135789999999999999999999999999999964 221 1123
Q ss_pred EEEeEEecCCHHHHHHHHHH--HHHcCCceeEEEeCCCCCCccCCCCCCCeEEEccccccccCCccceEEEeEEe-----
Q 003762 586 QFATTLTSIDLDEIQKFLDA--AVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFH----- 658 (797)
Q Consensus 586 ~~v~~~~~~~~eei~~~f~~--ai~~g~EGlmvK~~~~ds~Y~pGkRs~~WlKlK~dY~~~~~dtlDlvVIGa~~----- 658 (797)
...+.... ..+.++|+. .+.+|.||||+|+. +++|.+|+ +..|+|||+.+. .|+|+||++++.
T Consensus 195 ~~~~~~~~---~~~~~~~~~~~~~~~g~EGlI~K~~--ds~Y~~Gr-~~~wlKwK~~~~----~TvDfvl~~~~~~~~~~ 264 (395)
T 1p16_A 195 GFKTMLTS---YHADDVLSKMDKLFHASDGLIYTCA--ETPYVFGT-DQTLLKWKPAEE----NTVDFQLEFVFNEVQDP 264 (395)
T ss_dssp EECCCEEG---GGTHHHHTTGGGCSSCEEEEEEEES--SSCCCSEE-EEEEEEECCGGG----CCEEEEEEEECEEEECT
T ss_pred EEecchhH---HHHHHHHHHHHhcCCCCCeEEEEeC--CCCcCCCC-ccceEEEecCCC----eEEEEEEEEEecccccc
Confidence 33333333 345666765 34589999999999 99999984 569999999764 599999998875
Q ss_pred ---CCCCcCCcc---ce----EEEEEecCCCceEEEeccccCCCCHHHHHHHHHhhccccCCCCCCCcccCCCCCCceEe
Q 003762 659 ---GRGKRTGVY---GA----FLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWF 728 (797)
Q Consensus 659 ---G~Gkr~g~~---gs----fllg~~d~~~g~~~~vgkVGTGfSd~~l~~l~~~l~~~~~~~p~~~~~~~~~~~pdvw~ 728 (797)
|+|++ +++ ++ |.|.+++++ ..++.++++ ||||++++++.+.++++
T Consensus 265 ~~~g~G~~-~~~~dy~~~p~~~~l~v~~~~-~~~~~f~~~--~ltd~e~~~l~~~~~~~--------------------- 319 (395)
T 1p16_A 265 DLDERDPT-STYLDYDAKPNLIKLRVWQGS-NVHTDFAKL--DLSDDDWERLKALEQPL--------------------- 319 (395)
T ss_dssp TSCTTSTT-CEEEECSSCCSEEEEEEECST-TCEEEEEEE--CCCHHHHHHHHHSSSCC---------------------
T ss_pred cccccCcc-ccccccccccceeEEEEEeCC-cccceeeEE--EeCHHHHHHhHhhcccC---------------------
Confidence 78877 665 44 788899864 247778887 99999999988755322
Q ss_pred ccceEEEEEeeeeecCCcccccccccCCCCCceeeeceEeeEeC
Q 003762 729 EPTEVWEVKAADLTISPVHRAAIGVVDPDKVFTVRFSVLAHLSF 772 (797)
Q Consensus 729 eP~~V~EV~~~eit~S~~~~aa~g~v~~~~G~sLRFPRf~riR~ 772 (797)
+..|+||.|.+ . ..| ||||.|+|+
T Consensus 320 -~~~IvEc~~~~-~--------------~~g----~wr~~R~R~ 343 (395)
T 1p16_A 320 -QGRIAECRQST-T--------------KKG----YWEMLRFRN 343 (395)
T ss_dssp -TTCEEEEEECS-S--------------STT----EEEEEEECT
T ss_pred -CCEEEEEEeec-C--------------CCC----ccEEEEEeC
Confidence 24699999986 1 125 999999999
No 11
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B*
Probab=99.97 E-value=5.8e-31 Score=286.58 Aligned_cols=188 Identities=19% Similarity=0.247 Sum_probs=145.6
Q ss_pred CCCceEEEeecceEEEEEEEe---cCCeEEEEecCCCccCCCcchHHHHHHhhcCCCCCCeEEEEEEEEEecCCCcccCh
Q 003762 451 QDMEFTCEYKYDGERAQIHYL---EDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPF 527 (797)
Q Consensus 451 ~g~~~~~E~KyDG~R~qih~~---~~g~V~ifSR~gkd~T~~yPel~~~l~~~~~~~v~~~ILDGElVa~d~~~g~~lpF 527 (797)
...+|++|+||||+|+|+|++ ++|.+++|||+|+++|..||++.. . ...++|||||+|++.. ++
T Consensus 73 ~~~~y~ve~K~DG~R~ll~~~~~~g~g~v~L~sR~~~~~t~~fp~~~~----~---~~~~~vLDGElv~~~~-~~----- 139 (330)
T 1ckm_A 73 KQNKYVVSEKTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLPFKNIPR----V---LFQGSIFDGELCVDIV-EK----- 139 (330)
T ss_dssp HHSCEEEEEEECSEEEEEEEEEETTEEEEEEECTTCCEEECCCSCCCT----T---GGGCEEEEEEEEEETT-TT-----
T ss_pred CcCCEEEEECcceEEEEEEEEecCCCCEEEEEeCCCCEEeccChhhhh----c---cCCCeeEEEEEEEEcC-CC-----
Confidence 335799999999999999995 346899999999999999998631 1 2368999999999531 11
Q ss_pred hhHHhhhcccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccC------CCcEEEEeEEecCCHHHHHH
Q 003762 528 QTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEE------PGFFQFATTLTSIDLDEIQK 601 (797)
Q Consensus 528 q~L~~R~Rk~~~~~~~~~~v~~~vFDILylnG~~L~~~Pl~ERr~lL~~l~~~~------~~~i~~v~~~~~~~~eei~~ 601 (797)
.++|++||||++||++|+++||.+|+++|++++... +-.+.+.+.... +.+++.+
T Consensus 140 ------------------~~~f~vFDlL~~~G~dl~~~pl~eRr~~L~~~l~~~~~~~~~~~~i~~~~~~~~-~~~~~~~ 200 (330)
T 1ckm_A 140 ------------------KFAFVLFDAVVVSGVTVSQMDLASRFFAMKRSLKEFKNVPEDPAILRYKEWIPL-EHPTIIK 200 (330)
T ss_dssp ------------------EEEEEEEEEEEETTEECTTSCHHHHHHHHHHHHTTCCCCTTSSSEEEECCCEET-TCHHHHH
T ss_pred ------------------eEEEEEEeeeeeCCcccccCCHHHHHHHHHHHHhhhcccCCCCeEEEEEEEEeh-hHHHHHH
Confidence 278999999999999999999999999999998631 123555444444 4444433
Q ss_pred HHHHHHHc--CCceeEEEeCCCCCCccCCCCCCCeEEEccccccccCCccceEEEeEEeCCCCcCCccceEEEEEecCCC
Q 003762 602 FLDAAVDA--SCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNN 679 (797)
Q Consensus 602 ~f~~ai~~--g~EGlmvK~~~~ds~Y~pGkRs~~WlKlK~dY~~~~~dtlDlvVIGa~~G~Gkr~g~~gsfllg~~d~~~ 679 (797)
-+..++.+ |.||||+|+. +++|.+| |+.+|+|+|+.+. .|+|+||++ |+| .+|+++.+.
T Consensus 201 ~~~~~~~~~yg~EGlI~K~~--dspY~~G-r~~~~lKwK~~~~----~tvDfvi~~---g~g---------~~gl~~~~~ 261 (330)
T 1ckm_A 201 DHLKKANAIYHTDGLIIMSV--DEPVIYG-RNFNLFKLKPGTH----HTIDFIIMS---EDG---------TIGIFDPNL 261 (330)
T ss_dssp HHHHHHHHHSCEEEEEEEES--SSCCCCE-EEEEEEEECSTTC----CCEEEEECS---TTC---------CEEEEETTT
T ss_pred HHHHHHhccCCCceEEEeeC--CCcccCC-CccCeEEEEeCCC----ceEEEEEEc---cCC---------eEEEEeCCC
Confidence 33567788 9999999999 9999998 6689999999664 599999883 444 235576655
Q ss_pred ceEEEecccc
Q 003762 680 EEFQSICKIG 689 (797)
Q Consensus 680 g~~~~vgkVG 689 (797)
|.+++++++.
T Consensus 262 ~~~vp~~~~~ 271 (330)
T 1ckm_A 262 RKNVPVGKLD 271 (330)
T ss_dssp TEEEECCCCS
T ss_pred Cceeeeeeee
Confidence 6888888864
No 12
>3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens}
Probab=99.96 E-value=9.2e-30 Score=244.79 Aligned_cols=132 Identities=30% Similarity=0.410 Sum_probs=103.4
Q ss_pred eEEEeecceEEEEEEEecCCeEEEEecCCCccCCCcchHHH------HHHhhcCCCCCCeEEEEEEEEEecCCCcccChh
Q 003762 455 FTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVL------AVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQ 528 (797)
Q Consensus 455 ~~~E~KyDG~R~qih~~~~g~V~ifSR~gkd~T~~yPel~~------~l~~~~~~~v~~~ILDGElVa~d~~~g~~lpFq 528 (797)
|++|+||||+|+|+|++ +|+|++|||||+++|.+||++.+ .|.+.+..++.++|||||+|+||+.++. |.
T Consensus 1 f~~E~K~DG~R~q~~~~-g~~v~l~SR~g~d~t~~fPel~~~~~l~~~i~~~~~~~~~~~iLDGEiv~~d~~~~~---f~ 76 (139)
T 3vnn_A 1 FYIETKLDGERMQMHKD-GDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQT---FM 76 (139)
T ss_dssp CCCCCCCCCEEEEEEEE-TTEEEEECSSCCBCTTTSCSSTTC--CCSGGGSCCCTTCCEEEEEEEEEEEETTTTE---EC
T ss_pred CEEEEEECeEEEEEEEE-CCEEEEEeCCCCCchhhccchhhhcchhHHHHHHHhccCCceEeeeEEEEecCCCCC---HH
Confidence 68999999999999995 78999999999999999999764 3445555556899999999999987654 44
Q ss_pred hHHhhhcccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCcEEEEeE
Q 003762 529 TLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATT 590 (797)
Q Consensus 529 ~L~~R~Rk~~~~~~~~~~v~~~vFDILylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~~v~~ 590 (797)
.++++............++||++|||||+||++|+++||.+||++|++++.+.++++++++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~vFDlL~l~G~~L~~~pl~eRr~~L~~l~~~~~~~~~~~~~ 138 (139)
T 3vnn_A 77 QKGTKFDIKRMVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEIVQK 138 (139)
T ss_dssp CC-------------CCEEEEEEEEEEEETTEECSSSCHHHHHHHHHHHCCCBTTBSCBCCC
T ss_pred HHHhhhhhhhhhhccCceEEEEEEEEEeECCcCcccCCHHHHHHHHHHHhhcCCCeEEEEec
Confidence 44444321111122357899999999999999999999999999999999988888877653
No 13
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.5e-24 Score=241.33 Aligned_cols=175 Identities=21% Similarity=0.225 Sum_probs=135.2
Q ss_pred hhcCCCceEEEeecceEEEEEEEec-----CCeEEEEecCCCccC---CCcchHHHH-----HHhhcCCCCCCeEEEEEE
Q 003762 448 NKFQDMEFTCEYKYDGERAQIHYLE-----DGSVEIYSRNAERNT---GKFPDVVLA-----VSRLKKPSVRSFVLDCEI 514 (797)
Q Consensus 448 ~k~~g~~~~~E~KyDG~R~qih~~~-----~g~V~ifSR~gkd~T---~~yPel~~~-----l~~~~~~~v~~~ILDGEl 514 (797)
+.+...+|++|+|+||+|+|+++.. +|.|.++||+++.++ .+||++.+. +.. ...++||||||
T Consensus 60 ~~L~~~dY~V~eK~DGiR~Ll~i~~~~~~g~g~v~LidR~~~~~~v~~~~FP~~~~~~~~~~l~~----~~~~TlLDGEl 135 (461)
T 3kyh_C 60 EKLLAHDYYVCEKTDGLRVLMFIVINPVTGEQGCFMIDRENNYYLVNGFRFPRLPQKKKEELLET----LQDGTLLDGEL 135 (461)
T ss_dssp HTTSSSCEEEEEEECSEEEEEEEEECTTTCCEEEEEECSSSCEEEECCCCCCCCSSCCSSGGGTC----CCCSEEEEEEE
T ss_pred HHhccCCEEEEEcccceEEEEEEeccccCCCceEEEEeCCCCeEEcccccCCcccccchhhhhhc----cCCCeEEEEEE
Confidence 4466678999999999999999862 368999999999986 589987542 222 23789999999
Q ss_pred EEEecCCCcccChhhHHhhhcccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccC-------------
Q 003762 515 VAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEE------------- 581 (797)
Q Consensus 515 Va~d~~~g~~lpFq~L~~R~Rk~~~~~~~~~~v~~~vFDILylnG~~L~~~Pl~ERr~lL~~l~~~~------------- 581 (797)
|+++. + + ....+++|++||||++||++++++||.+|+++|++++...
T Consensus 136 V~d~~--~----~--------------~~~~~~~y~~FDlL~~~G~dl~~~pl~eR~~~Le~~I~~P~~~~~~~~p~~~~ 195 (461)
T 3kyh_C 136 VIQTN--P----M--------------TKLQELRYLMFDCLAINGRCLTQSPTSSRLAHLGKEFFKPYFDLRAAYPNRCT 195 (461)
T ss_dssp EEEEC--T----T--------------TCCEEEEEEEEEEEEETTEECSSSBHHHHHHHHHHTTHHHHHHHHHHCSTTCS
T ss_pred EeccC--C----C--------------CCccceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhcccchhhhhccccccc
Confidence 99642 1 1 0136789999999999999999999999999999887320
Q ss_pred --CCcEEEEeEEecCCHHHHHHHHHH--HHHcCCceeEEEeCCCCCCccCCCCCCCeEEEccccccccCCccceEEEe
Q 003762 582 --PGFFQFATTLTSIDLDEIQKFLDA--AVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIA 655 (797)
Q Consensus 582 --~~~i~~v~~~~~~~~eei~~~f~~--ai~~g~EGlmvK~~~~ds~Y~pGkRs~~WlKlK~dY~~~~~dtlDlvVIG 655 (797)
+-.+.+...... .++.++|+. ++.+|.||||+|+. +++|.+|+|+.+|+|||+.+. .|+|++++=
T Consensus 196 ~~pF~V~~K~~~~~---~~~~~l~~~~~~l~~~~EGLv~k~~--~spY~~Ggr~~~~lKwKp~~~----nTVDF~L~i 264 (461)
T 3kyh_C 196 TFPFKISMKHMDFS---YQLVKVAKSLDKLPHLSDGLIFTPV--KAPYTAGGKDSLLLKWKPEQE----NTVDFKLIL 264 (461)
T ss_dssp CCCSEEEECCCEEG---GGHHHHHHHHTTCSSCEEEEEEEES--SSBCCSSSEEEEEEECCCTTT----CCCEEEEEC
T ss_pred cCCcEEEeccchhh---hhHHHHHHhhhhccCCCCeEEEEeC--CCCCcCCCcCCCeEEEEcCCC----eeEEEEEEe
Confidence 112333222233 345666663 37899999999999 999999889999999999775 599998763
No 14
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A
Probab=99.90 E-value=3.4e-24 Score=233.87 Aligned_cols=167 Identities=19% Similarity=0.228 Sum_probs=119.4
Q ss_pred CCceEEEeecceEEEEEEEecCCeEEEEecCCCccC---CCcchHHHHHHhhcCCCCCCeEEEEEEEEEecCCCcccChh
Q 003762 452 DMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNT---GKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQ 528 (797)
Q Consensus 452 g~~~~~E~KyDG~R~qih~~~~g~V~ifSR~gkd~T---~~yPel~~~l~~~~~~~v~~~ILDGElVa~d~~~g~~lpFq 528 (797)
..+|++|+||||+|+|+++..+|+|.++||+++++| .+||++.+. .. ...++|||||+|+++. +|
T Consensus 62 ~~~y~v~~K~DG~R~ll~i~~~~~v~L~sR~~~~~~~~~~~FP~~~~~--~~---~~~~tvLDGElV~~~~-~g------ 129 (343)
T 3rtx_A 62 QKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDL--RM---HLSNTLLDGEMIIDKV-NG------ 129 (343)
T ss_dssp HSCEEEEEECCCEEEEEEECSTTCEEEECTTCCEEEETTCCCEETTEE--EE---ECCSEEEEEEEEEEES-SS------
T ss_pred cCCEEEEECCCceEEEEEEEcCCEEEEEeCCCCeEEeccccCCcchhh--hc---cCCCeEEEEEEEEecC-CC------
Confidence 347999999999999999954689999999999985 489987652 11 2368999999999863 22
Q ss_pred hHHhhhcccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHh-hcc--------------CCCcEEEEeEEec
Q 003762 529 TLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDS-FEE--------------EPGFFQFATTLTS 593 (797)
Q Consensus 529 ~L~~R~Rk~~~~~~~~~~v~~~vFDILylnG~~L~~~Pl~ERr~lL~~l-~~~--------------~~~~i~~v~~~~~ 593 (797)
...+.|++||+|++||+++++.||.+|+++|++. +.+ .|-.+.+.+.+..
T Consensus 130 ---------------~~~~~~~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~p~~~~~~~~~~~~~~~pf~vr~K~~~~~ 194 (343)
T 3rtx_A 130 ---------------QAVPRYLIYDIIKFNAQPVGDCDFNIRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRPKQFFDI 194 (343)
T ss_dssp ---------------SEEEEEEEEEEEEBTTBCGGGSCHHHHHHHHHHHTHHHHHHHHHHSSCCTTTSSSEEEECCCEEG
T ss_pred ---------------cEeeEEEEEEEEeECCcCcccCCHHHHHHHHHHHhhhHHHHHhhcccccccCCCcEEEEEEeEeh
Confidence 1245999999999999999999999999999974 321 1224566666666
Q ss_pred CCHHHHH-HHHHHHHHcCCceeEEEeCCCCCCccCCCCCCCeEEEccccccccCCccceEE
Q 003762 594 IDLDEIQ-KFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVP 653 (797)
Q Consensus 594 ~~~eei~-~~f~~ai~~g~EGlmvK~~~~ds~Y~pGkRs~~WlKlK~dY~~~~~dtlDlvV 653 (797)
...+++. .-|..++.+|.||||++.. + +|.+| |+.+|+|||+.+. .|+|+.+
T Consensus 195 ~~~~~ll~~~~~~~l~~~~dGlIf~~~--~-~Y~~G-~~~~~lKwKp~~~----~tvDF~l 247 (343)
T 3rtx_A 195 NISRKLLEGNFAKEVSHEMDGLIFQPI--G-KYKPG-RCDDILKWKPPSL----NSVDFRL 247 (343)
T ss_dssp GGHHHHSCC----------CEEEEEES--S-CCCCE-EEEEEEEECCSTT----CC-----
T ss_pred hhHHHHHhhhhHhhcCCCCCeEEEEEC--c-cCcCC-CCcceEEEecCcc----eEEEEEE
Confidence 5544443 2356788999999999999 8 99986 8889999999775 4999977
No 15
>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5}
Probab=99.49 E-value=3.1e-13 Score=149.89 Aligned_cols=144 Identities=20% Similarity=0.214 Sum_probs=104.7
Q ss_pred CCceEEEeecceEEEEEEEecCCeEEEEecCCCc--cCC-Ccch-HHHHHHhhcCCCCCCeEEEEEEEEEecCCCcccCh
Q 003762 452 DMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAER--NTG-KFPD-VVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPF 527 (797)
Q Consensus 452 g~~~~~E~KyDG~R~qih~~~~g~V~ifSR~gkd--~T~-~yPe-l~~~l~~~~~~~v~~~ILDGElVa~d~~~g~~lpF 527 (797)
...|+||+|+||.|+++++ .+|+++++||++.. +|. .+|+ +...+... ..+++||||++.++ .+|
T Consensus 94 ~~~~vvEeKlDG~~v~l~y-~~G~v~a~TRg~g~e~iT~n~i~~wip~~L~~~----~~~l~L~GEvv~~~------~~f 162 (389)
T 2vug_A 94 RGEFYVEEKVDGYNVRVVM-YKGKMLGITRGGFICPFTTERIPDFVPQEFFKD----NPNLILVGEMAGPE------SPY 162 (389)
T ss_dssp SCEEEEEEECCSEEEEEEE-ETTEEEEEETTSCBCHHHHHHGGGTSCTHHHHH----CTTEEEEEEEESSS------CSS
T ss_pred CCeEEEEEeecCcEEEEEE-ECCEEEEEeCCCCCCCCchhhhhHhHHHHHhcC----CCcEEEEEEEEecC------ChH
Confidence 3579999999999999998 58899999999998 543 4455 22223222 25799999998864 245
Q ss_pred hhHHhhhcccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHH
Q 003762 528 QTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAV 607 (797)
Q Consensus 528 q~L~~R~Rk~~~~~~~~~~v~~~vFDILylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai 607 (797)
+... . .....++.|++|||++.++... .|+.+|+++|+++--+....+. .....+.+++.++++.+.
T Consensus 163 ~~~n------~--~np~r~l~F~vFDV~~~~~g~~--~s~~er~~~L~~lG~~~vp~~~---~~~~~~~eel~~~i~~~~ 229 (389)
T 2vug_A 163 LVEG------P--PYVKEDIQFFLFDVQEIKTGRS--LPVEERLKIAEEYGINHVEVFG---KYTKDDVDELYQLIERLS 229 (389)
T ss_dssp CSCC------C--TTCCSSCEEEEEEEEETTTCCB--CCHHHHHHHHHHHTCCBCCEEE---EEEGGGHHHHHHHHHHHH
T ss_pred HHhc------c--cCcccCCEEEEEEeeccCCCCc--CCHHHHHHHHHHcCCCCCCeEE---EEcCCCHHHHHHHHHHhc
Confidence 3221 0 1114689999999988863332 7899999999998433333332 223346799999999999
Q ss_pred HcCCceeEEEeC
Q 003762 608 DASCEGLIIKTM 619 (797)
Q Consensus 608 ~~g~EGlmvK~~ 619 (797)
..+.||||+|..
T Consensus 230 ~~~~EGvViK~~ 241 (389)
T 2vug_A 230 KEGREGIIMKSP 241 (389)
T ss_dssp HTTCCEEEEECT
T ss_pred CCCCCeEEEEEC
Confidence 999999999997
No 16
>3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus}
Probab=99.37 E-value=3e-12 Score=139.75 Aligned_cols=144 Identities=19% Similarity=0.235 Sum_probs=105.6
Q ss_pred CCceEEEeecceEEEEEEEecCCeEEEEecCCCcc---CCCcchHHH-HHHhhcCCCCCCeEEEEEEEEEecCCCcccCh
Q 003762 452 DMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERN---TGKFPDVVL-AVSRLKKPSVRSFVLDCEIVAYDREKQKILPF 527 (797)
Q Consensus 452 g~~~~~E~KyDG~R~qih~~~~g~V~ifSR~gkd~---T~~yPel~~-~l~~~~~~~v~~~ILDGElVa~d~~~g~~lpF 527 (797)
..+|++|+|+||+++-+.. .+|++..+||+|... |.++|++.+ .+.+ ..++++||||+++-+ -||
T Consensus 72 ~~~~~veEKLDG~NVRi~~-~dG~ilA~TRgG~icP~tT~r~~~~~~~~f~~----~~P~l~LdGEl~g~~------npy 140 (370)
T 3qwu_A 72 EAPFWVEEKVDGYNTRIFK-YGDNYYALSRGGFICPFTTDRLPDLIDLRILD----ENPDLVICAEVAGPE------NPY 140 (370)
T ss_dssp SSCEEEEEECSSEEEEEEE-ETTEEEEECTTSCBCHHHHHHHHHHCCCHHHH----HCTTEEEEEEEECTT------CSS
T ss_pred CCcEEEEEeeCCeEEEEEE-ECCEEEEEcCCCcccCcchhhhhhhcCchhhh----cCCCeEEEEEEEcCC------CCc
Confidence 4689999999998888865 478999999999875 555555433 1222 236899999999852 144
Q ss_pred hhHHhhhcccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCcEEEEeEEecC--CHHHHHHHHHH
Q 003762 528 QTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSI--DLDEIQKFLDA 605 (797)
Q Consensus 528 q~L~~R~Rk~~~~~~~~~~v~~~vFDILylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~--~~eei~~~f~~ 605 (797)
.. . .. .....++.|++|||...+ ...-+|+.+|+++|+++-.+ .+.++...... +.+++.+++++
T Consensus 141 ~~-----~-s~--~y~~~~i~F~VFDV~d~~--~~~~L~~~eR~~ll~~~~lp---~V~ii~~~~~~~~~~~~l~~~l~~ 207 (370)
T 3qwu_A 141 IE-----E-SP--PYVKEDVQLFVFDFMKKN--EQGFLSQEEKMELIEKYNLP---HVEILGRFTASEEGIKKIKEILKR 207 (370)
T ss_dssp CS-----C-CC--TTCCSSCEEEEEEEEETT--CCSCCCHHHHHHHHHHHTCC---BCCEEEEECSSHHHHHHHHHHHHH
T ss_pred cc-----c-CC--cccccCceEEEEeCcccc--CCCcCCHHHHHHHHHHCCCC---CccEEEEeCCCCCCHHHHHHHHHH
Confidence 31 0 00 112467899999999753 23457999999999988543 34455555666 78899999999
Q ss_pred HHHcCCceeEEEeC
Q 003762 606 AVDASCEGLIIKTM 619 (797)
Q Consensus 606 ai~~g~EGlmvK~~ 619 (797)
..+.|.||||+|++
T Consensus 208 l~~~g~EGVVlK~~ 221 (370)
T 3qwu_A 208 FNEEGREGVVFKED 221 (370)
T ss_dssp HHHTTCCEEEEEES
T ss_pred HHhCCCcEEEEecC
Confidence 99999999999998
No 17
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=98.24 E-value=1.3e-06 Score=94.60 Aligned_cols=169 Identities=18% Similarity=0.196 Sum_probs=110.5
Q ss_pred ceEEEeecceEEEEEEEecCCe-EEEEec----CCCccCCCcchHHHHHHhhcCCCCCCeEEEEEEEEEecCCCcccChh
Q 003762 454 EFTCEYKYDGERAQIHYLEDGS-VEIYSR----NAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQ 528 (797)
Q Consensus 454 ~~~~E~KyDG~R~qih~~~~g~-V~ifSR----~gkd~T~~yPel~~~l~~~~~~~v~~~ILDGElVa~d~~~g~~lpFq 528 (797)
.|+||+|+||..+.+.+ ++|. |+..|| .|+|+|....-|.. |...+. ....+.+-||++.-. ..|.
T Consensus 114 ~~~~EpKiDGlaisL~Y-e~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP~~L~-~p~~leVRGEv~m~~------~~F~ 184 (332)
T 1ta8_A 114 AYCCELKIDGLAISLRY-ENGVFVRGATRGDGTVGENITENLRTVRS-VPMRLT-EPISVEVRGECYMPK------QSFV 184 (332)
T ss_dssp CEEEEEEECSEEEEEEE-ETTEEEEEEECTTSSEEEBCHHHHTTCTT-SCSBCS-SCCCEEEEEEEECCH------HHHH
T ss_pred eEEEeeeecceEEEEEE-ECCEEEEEEcCCCCccchhHHHHHHHhcC-CccccC-CCCeEEEEEEEEEEH------HHHH
Confidence 59999999999999999 4787 899999 89999875433221 222222 124589999999742 2455
Q ss_pred hHHhh-------------------hcccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCcEEEEe
Q 003762 529 TLSTR-------------------ARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFAT 589 (797)
Q Consensus 529 ~L~~R-------------------~Rk~~~~~~~~~~v~~~vFDILylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~~v~ 589 (797)
.+-.+ +|..........++.|++|++...+|.. -.+..++.+.|+++-=++.....+
T Consensus 185 ~lN~~~~~~g~~~faNPRNaAAGsLrqld~~ita~R~L~ff~y~i~~~~~~~--~~t~~e~l~~L~~~GF~v~~~~~~-- 260 (332)
T 1ta8_A 185 ALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK--AKTQFEALEELSAIGFRTNPERQL-- 260 (332)
T ss_dssp HHHHHHHHTTCCCCSSHHHHHHHHHTCSBHHHHHTSCCEEEEEEESCCTTCC--CSBHHHHHHHHHHTTCCCCTTCEE--
T ss_pred HHHHHHHhcCCccccChHHHHHHHHHccChhhHhhCCCEEEEEecccccCCC--CCCHHHHHHHHHHcCCCCCCcceE--
Confidence 54321 1111000012568999999996433432 268999999999985454433333
Q ss_pred EEecCCHHHHHHHHHHHHHc------CCceeEEEeCCCCCCcc----CCCCCCCe---EEEccc
Q 003762 590 TLTSIDLDEIQKFLDAAVDA------SCEGLIIKTMDRDATYE----PSKRSLNW---LKLKKD 640 (797)
Q Consensus 590 ~~~~~~~eei~~~f~~ai~~------g~EGlmvK~~~~ds~Y~----pGkRs~~W---lKlK~d 640 (797)
+.+.+++.++++++.+. .-.|||+|-- +-.|. ...|.+.| +|+..+
T Consensus 261 ---~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn--~~~~q~~LG~tsk~PRWAiAyKfpae 319 (332)
T 1ta8_A 261 ---CQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVN--EFALQDELGFTVKAPRWAIAYKFPPE 319 (332)
T ss_dssp ---ESSHHHHHHHHHHHHHTGGGSSSCEEEEEEEES--BHHHHHHHCBCSSSBSSEEEEECC--
T ss_pred ---eCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEec--CHHHHHHhCCcCCCCCceeEecCCCc
Confidence 67899999999998755 6689999975 54443 13467778 555553
No 18
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=98.15 E-value=2.6e-06 Score=91.96 Aligned_cols=169 Identities=17% Similarity=0.180 Sum_probs=110.0
Q ss_pred CceEEEeecceEEEEEEEecCCe-EEEEec----CCCccCCCcchHHHHHHhhcCCCCCCeEEEEEEEEEecCCCcccCh
Q 003762 453 MEFTCEYKYDGERAQIHYLEDGS-VEIYSR----NAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPF 527 (797)
Q Consensus 453 ~~~~~E~KyDG~R~qih~~~~g~-V~ifSR----~gkd~T~~yPel~~~l~~~~~~~v~~~ILDGElVa~d~~~g~~lpF 527 (797)
-.|+||+|+||..+.+.+. +|. |+..|| .|+|+|....-|.. |...+. ....+.+-||++.-. ..|
T Consensus 107 ~~~~~EpKiDGlaisL~Ye-~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP~~L~-~p~~levRGEv~m~~------~~F 177 (318)
T 1b04_A 107 AAYVCELAIDGLAVSVRYE-DGYFVQGATRGDGTTGEDITENLKTIRS-LPLRLK-EPVSLEARGEAFMPK------ASF 177 (318)
T ss_dssp CCEEEEEEESSEEEEEEEE-TTEEEEEEECTTSSCEEBCHHHHHTCTT-SCSBCS-SCCCEEEEEEEECCH------HHH
T ss_pred ceEEEEEecccEEEEEEEE-CCEEEEEEccCCCcccHHHHHhHHHhcC-CCcccC-CCCeEEEEEEEEEEH------HHH
Confidence 3599999999999999994 775 789999 89999875432221 122222 124589999999742 245
Q ss_pred hhHHhhh-------------------cccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCcEEEE
Q 003762 528 QTLSTRA-------------------RKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFA 588 (797)
Q Consensus 528 q~L~~R~-------------------Rk~~~~~~~~~~v~~~vFDILylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~~v 588 (797)
..+-.+. |..........++.|++|++...+|.. -.+..++.+.|+++-=++.....+
T Consensus 178 ~~lN~~~~~~g~~~faNpRNaAAGsLrqld~~ita~R~L~ff~y~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~~~~~- 254 (318)
T 1b04_A 178 LRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALG--IASHSEALDYLQALGFKVNPERRR- 254 (318)
T ss_dssp HHHHHHHHHC--CCCSCHHHHHHHHHHSSCHHHHHHTCCEEEEEEETTTTTTT--CCBHHHHHHHHHHTTCCCCTTCEE-
T ss_pred HHHHHHHHHcCCCccchhhHHHHHHHHccChhhHhhCCCEEEEEecccccCCC--CCCHHHHHHHHHHcCCCCCCcceE-
Confidence 5543221 111000012468999999995333422 268999999999985554433333
Q ss_pred eEEecCCHHHHHHHHHHHHH------cCCceeEEEeCCCCCCcc----CCCCCCCe---EEEcc
Q 003762 589 TTLTSIDLDEIQKFLDAAVD------ASCEGLIIKTMDRDATYE----PSKRSLNW---LKLKK 639 (797)
Q Consensus 589 ~~~~~~~~eei~~~f~~ai~------~g~EGlmvK~~~~ds~Y~----pGkRs~~W---lKlK~ 639 (797)
+.+.+++.+++++..+ -.-.|||+|-- +-.|. ...|.+.| +|+..
T Consensus 255 ----~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn--~~~~q~~LG~t~k~PRWAiA~Kfpa 312 (318)
T 1b04_A 255 ----CANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVD--SFAQQRALGATAKSPRWAIAYKFPA 312 (318)
T ss_dssp ----ESSHHHHHHHHHHHHHHSTTCSSCEEEEEEEEC--BHHHHHHHCCCSSSCTTEEEEECCC
T ss_pred ----eCCHHHHHHHHHHHHHHHhhCCCCCCcEEEEec--CHHHHHHhCCcCCCCCceeeecCCc
Confidence 5788999999998865 35689999975 44443 13467788 45544
No 19
>1s68_A RNA ligase 2; ribonucleic acid ligase, RNA repair; HET: AMP; 1.90A {Enterobacteria phage T4} SCOP: d.142.2.4
Probab=98.05 E-value=1.5e-05 Score=83.41 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=69.0
Q ss_pred cCCCceEEEeecceEEEEEEEecCCeEEEEecCCCccCC-C---cchHHH-------HHHhhcC-CCCCCeEEEEEEEEE
Q 003762 450 FQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTG-K---FPDVVL-------AVSRLKK-PSVRSFVLDCEIVAY 517 (797)
Q Consensus 450 ~~g~~~~~E~KyDG~R~qih~~~~g~V~ifSR~gkd~T~-~---yPel~~-------~l~~~~~-~~v~~~ILDGElVa~ 517 (797)
+.+.+|++++|+||..+-|.+. +|++.++||++.-... . +-.+.+ .|.+.+. ....+++|-||++..
T Consensus 25 ~~~~~vvvtEKldG~N~~i~~~-~~~i~~~sR~~~l~~~~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~GE~~G~ 103 (249)
T 1s68_A 25 LTGGEWVAREKIHGTNFSLIIE-RDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAGP 103 (249)
T ss_dssp CSCSCEEEEECCCSEEEEEEEE-SSCEEEEETTEECCTTCCCTTTHHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEEST
T ss_pred cCCCCEEEEEEECCcceEEEEE-CCEEEEEeCCcccCCCCccchHHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEEccc
Confidence 4456899999999999999885 6789999999975321 1 212221 1222221 001589999999974
Q ss_pred ecCCCcccChhhHHhhhcccCCccccccceEEEEeeee-ecCCccccCCcHHHHHHHHHHh
Q 003762 518 DREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDIL-YRNGQPLLQEQLRVRREHLYDS 577 (797)
Q Consensus 518 d~~~g~~lpFq~L~~R~Rk~~~~~~~~~~v~~~vFDIL-ylnG~~L~~~Pl~ERr~lL~~l 577 (797)
. ..+++.- . +..|++|||. ..++....-++..+|+++++.+
T Consensus 104 ~---------------Iq~~v~Y---~-~~~FyvFdI~~~~~~g~~~~l~~~~~~~l~~~~ 145 (249)
T 1s68_A 104 G---------------IQKNVDY---C-DKDFYVFDIIVTTESGDVTYVDDYMMESFCNTF 145 (249)
T ss_dssp T---------------TSSSCCC---C-SCEEEEEEEEEEETTCCEEECCHHHHHHHHHHH
T ss_pred c---------------ccCCccc---C-CCeEEEEEEEEecCCCccccCCHHHHHHHHHHC
Confidence 2 1111111 1 4589999996 4333222346899999999885
No 20
>2hvq_A ORF1, hypothetical 37.6 kDa protein in GP24-HOC intergenic region; RNA, ligase, lysine adenylate; HET: APK; 2.40A {Enterobacteria phage T4} PDB: 2hvr_A* 2hvs_A*
Probab=98.04 E-value=3.5e-05 Score=83.92 Aligned_cols=108 Identities=14% Similarity=0.127 Sum_probs=69.2
Q ss_pred cCCCceEEEeecceEEEEEEEecCCeEEEEecCCCccCC-C---cchHHHH----HHhhcCC----CCCCeEEEEEEEEE
Q 003762 450 FQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTG-K---FPDVVLA----VSRLKKP----SVRSFVLDCEIVAY 517 (797)
Q Consensus 450 ~~g~~~~~E~KyDG~R~qih~~~~g~V~ifSR~gkd~T~-~---yPel~~~----l~~~~~~----~v~~~ILDGElVa~ 517 (797)
+.+.+|++++|+||..+-|.+. +|++.++||++.-... . |-...+. +.+++.. ...+++|-||++..
T Consensus 26 l~~~~vvvtEKlDG~N~~i~~~-~~~i~~~sR~~~l~~~~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~i~GE~~G~ 104 (335)
T 2hvq_A 26 LTGGEWVAREXIHGTNFSLIIE-RDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAGP 104 (335)
T ss_dssp CSCSCEEEEECCSSEEEEEEEE-TTEEEEEETTEECCTTCCCTTTHHHHHHHHHHHHHHHTTHHHHTEEEEEEEEEEESB
T ss_pred cCCCcEEEEEEecCcceEEEEE-CCEEEEecCCcccCCccccchHHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEccC
Confidence 4456899999999999999885 6789999999975321 1 1112221 2222210 01589999999974
Q ss_pred ecCCCcccChhhHHhhhcccCCccccccceEEEEeeee-ecCCccccCCcHHHHHHHHHHh
Q 003762 518 DREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDIL-YRNGQPLLQEQLRVRREHLYDS 577 (797)
Q Consensus 518 d~~~g~~lpFq~L~~R~Rk~~~~~~~~~~v~~~vFDIL-ylnG~~L~~~Pl~ERr~lL~~l 577 (797)
. ..+++.. . +..|++|||. ..++..-.-++..+|+++++.+
T Consensus 105 ~---------------Iq~~i~Y---~-~~~FyvFDI~~~~~~~~~~~l~~~~~~~l~~~~ 146 (335)
T 2hvq_A 105 G---------------IQKNVDY---G-DKDFYVFDIIVTTESGDVTYVDDYMMESFCNTF 146 (335)
T ss_dssp T---------------TBSSCCC---C-SSEEEEEEEEEEETTCCEEECCHHHHHHHHHHH
T ss_pred c---------------ccCCccc---C-CCeEEEEEEEEecCCCceeeCCHHHHHHHHHHc
Confidence 2 1111111 1 4589999997 3343222347999999999886
No 21
>1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG; 2.40A {Homo sapiens}
Probab=97.89 E-value=5.4e-05 Score=76.60 Aligned_cols=167 Identities=19% Similarity=0.188 Sum_probs=118.3
Q ss_pred ccccccccCChHHHHhhcCCCceEEEeecceEEEEEEEecCCeEEEEecCCCccC---CCcchHHHHHHhhcCCCCCCeE
Q 003762 433 GPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNT---GKFPDVVLAVSRLKKPSVRSFV 509 (797)
Q Consensus 433 ~PMLA~~~~~i~~~l~k~~g~~~~~E~KyDG~R~qih~~~~g~V~ifSR~gkd~T---~~yPel~~~l~~~~~~~v~~~I 509 (797)
+.||+.=..++++-+. .+|++=+-==|.||+|+. .+|....++|+|..+. ...|.-.. +. ..+..-+|
T Consensus 5 ~lmlsEWl~diP~dl~----~~Wl~vp~P~GkRcLvva-~~G~T~~~~k~G~~~~~F~S~LPgG~~---~~-~~~~~~tI 75 (204)
T 1xk5_A 5 QLMLSEWLIDVPSDLG----QEWIVVVCPVGKRALIVA-SRGSTSAYTKSGYCVNRFSSLLPGGNR---RN-STAKDYTI 75 (204)
T ss_dssp CSEEEEECCSCCTTHH----HHEEEEEEESSEEEEEEE-ETTEEEEECTTSCEEEEECCSSSSSCS---SS-CCTTCCEE
T ss_pred chhhhhhcccCCCccC----CCeEEEECCCCcEEEEEe-cCCeEEEECCCCcEEEEEcccCCCCCc---cc-CCCCCCEE
Confidence 3577765444443221 368888888899999998 4889999999998652 12221100 00 00125699
Q ss_pred EEEEEEEEecCCCcccChhhHHhhhcccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCC-------
Q 003762 510 LDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEP------- 582 (797)
Q Consensus 510 LDGElVa~d~~~g~~lpFq~L~~R~Rk~~~~~~~~~~v~~~vFDILylnG~~L~~~Pl~ERr~lL~~l~~~~~------- 582 (797)
|||=..- . .-+|+|.|||.+||.++.+...+-|.-.|++-+.|.+
T Consensus 76 LDCI~~e---~-------------------------~~tyYVLDvl~W~g~~l~dcetefRffWl~skl~E~~~l~~~s~ 127 (204)
T 1xk5_A 76 LDCIYNE---V-------------------------NQTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTK 127 (204)
T ss_dssp EEEEEEG---G-------------------------GTEEEEEEEEEETTEECTTSCHHHHHHHHHHHTTTSTTTTSCBT
T ss_pred EEEEEec---C-------------------------CcEEEEEEEEEECCceeecCcHHHHHHHHHHHhccccccccccc
Confidence 9985431 1 1279999999999999999999999999999987753
Q ss_pred ---CcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeCCCCCCccCCCCCCCeEEEccc
Q 003762 583 ---GFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKD 640 (797)
Q Consensus 583 ---~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~~~ds~Y~pGkRs~~WlKlK~d 640 (797)
-+|..+++..++ .+.+.+.+.....--.+|+.+=.. ++.|++|. ++-+.=+|+.
T Consensus 128 ~n~~~f~~lp~~~c~-~~~l~~~~~~~~~~~~DGlLFyHK--~a~Y~~G~-TPLv~WLkp~ 184 (204)
T 1xk5_A 128 LNPFKFVGLKNFPCT-PESLCDVLSMDFPFEVDGLLFYHK--QTHYSPGS-TPLVGWLRPY 184 (204)
T ss_dssp TBSSEEEECCEEECS-HHHHHHHHTCCCSSCEEEEEEEES--SCCCCSEE-EEEEEEECGG
T ss_pred cCCcceEecccccCC-HHHHHHHHccCCCCCcceEEEEec--cccccCCC-CChhhhcchh
Confidence 256677788775 567777776556677899999999 99999984 5544445773
No 22
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=97.80 E-value=2.1e-06 Score=93.04 Aligned_cols=185 Identities=16% Similarity=0.177 Sum_probs=113.4
Q ss_pred cccccc-ccCChHHHH---hhcC-----CCceEEEeecceEEEEEEEecCCe-EEEEec----CCCccCCCcchHHHHHH
Q 003762 433 GPMLAK-PTKGVSEIV---NKFQ-----DMEFTCEYKYDGERAQIHYLEDGS-VEIYSR----NAERNTGKFPDVVLAVS 498 (797)
Q Consensus 433 ~PMLA~-~~~~i~~~l---~k~~-----g~~~~~E~KyDG~R~qih~~~~g~-V~ifSR----~gkd~T~~yPel~~~l~ 498 (797)
.|||.- .+-+.+++. ++.. ...|+||+|+||..+-+.+ ++|. |+..|| .|+|+|....-|.. |.
T Consensus 87 ~pMlSL~n~f~~eel~~f~~rv~~~l~~~~~~~~EpKiDGlaisL~Y-e~G~Lv~a~TRGDG~~GEDVT~nvrtI~~-IP 164 (328)
T 1zau_A 87 ERMLSLDNAFTADELAAWAGRIHAEVGDAAHYLCELKIDGVALSLVY-REGRLTRASTRGDGRTGEDVTLNARTIAD-VP 164 (328)
T ss_dssp SCCCCCCCBSSHHHHHHHHHGGGTTTCSCSCEEEEEEECSEEEEEEC-GGGBCCBCBBCTTSSEECBCHHHHHHSSS-CC
T ss_pred CCCCCccccCCHHHHHHHHHHHHHhcCCCcceEEeeecceEEEEEEE-ECCEEEEEEccCCCcccHHHHHHHHHhcC-CC
Confidence 389863 233444442 2221 1469999999999999999 4675 789999 89999875432211 12
Q ss_pred hhc-C-C---CCCCeEEEEEEEEEecCCCcccChhhHHhh-------------------hcccCCccccccceEEEEeee
Q 003762 499 RLK-K-P---SVRSFVLDCEIVAYDREKQKILPFQTLSTR-------------------ARKNVSLSDIKVDVCIYAFDI 554 (797)
Q Consensus 499 ~~~-~-~---~v~~~ILDGElVa~d~~~g~~lpFq~L~~R-------------------~Rk~~~~~~~~~~v~~~vFDI 554 (797)
..+ . . ....+.+-||++.-. ..|..+-.+ +|........+.++.|++|++
T Consensus 165 ~~L~~g~~~~~p~~leVRGEv~m~~------~~F~~lN~~~~~~g~~~faNPRNaAAGsLrqld~~ita~R~L~f~~y~i 238 (328)
T 1zau_A 165 ERLTPGDDYPVPEVLEVRGEVFFRL------DDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGL 238 (328)
T ss_dssp SBCCCBTTBCCCSCCEEEEEEBCCH------HHHHHHHHSCSSTTSCCCSSHHHHHHHHHTCSSHHHHHHSCCBCCCCBC
T ss_pred hhhccCCcCCCCCeEEEEEEEEEEH------HHHHHHHHHHHHcCCccccChHHHHHHHHHccChhhhhcCcceEEEEec
Confidence 222 1 0 013489999999742 234444211 111100001245799999999
Q ss_pred eecCCccccCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHc------CCceeEEEeCCCCCCccC-
Q 003762 555 LYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDA------SCEGLIIKTMDRDATYEP- 627 (797)
Q Consensus 555 LylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~------g~EGlmvK~~~~ds~Y~p- 627 (797)
...++.. -.+..++.+.|+++-=++.... ..+.+.+++.+++++..+. .-.|||+|-- +-.|..
T Consensus 239 ~~~~~~~--~~t~~e~l~~L~~~Gf~v~~~~-----~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn--~~~~q~~ 309 (328)
T 1zau_A 239 GHVEGFR--PATLHQAYLALRAWGLPVSEHT-----TLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVD--EVALQRR 309 (328)
T ss_dssp CCCSSCC--CSBHHHHHHHHHTTTCCCCCCC-----CCBCHHHHHHHHHHHTTTTCSSCSSCEEEEEEEEC--BHHHHTT
T ss_pred cccCCCC--CCCHHHHHHHHHHcCCCCCCce-----EEeCCHHHHHHHHHHHHHHHhcCCCCCceEEEEec--CHHHHHH
Confidence 6555432 2588999999998743332222 2367789999999998655 5689999975 444432
Q ss_pred ---CCCCCCe
Q 003762 628 ---SKRSLNW 634 (797)
Q Consensus 628 ---GkRs~~W 634 (797)
..|.+.|
T Consensus 310 LG~t~k~PRW 319 (328)
T 1zau_A 310 LGSTSRAPRW 319 (328)
T ss_dssp SCBCSSSBSS
T ss_pred hCccCCCCCc
Confidence 2356667
No 23
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=97.71 E-value=0.00011 Score=78.98 Aligned_cols=168 Identities=16% Similarity=0.169 Sum_probs=104.3
Q ss_pred ccccc-ccCChHHHH---h----hcCCCceEEEeecceEEEEEEEecCCe-EEEEecC----CCccCCCcchHHHHHHhh
Q 003762 434 PMLAK-PTKGVSEIV---N----KFQDMEFTCEYKYDGERAQIHYLEDGS-VEIYSRN----AERNTGKFPDVVLAVSRL 500 (797)
Q Consensus 434 PMLA~-~~~~i~~~l---~----k~~g~~~~~E~KyDG~R~qih~~~~g~-V~ifSR~----gkd~T~~yPel~~~l~~~ 500 (797)
|||.- .+.+.+++. + .++...|+||+|+||.-+.+.+ .+|. ++..||. |+|+|....-|. .|+..
T Consensus 75 pMlSL~n~~~~~el~~f~~r~~~~l~~~~~~~epKiDGlavsL~Y-~~G~L~~a~TRGDG~~GeDiT~n~~tI~-~IP~~ 152 (305)
T 4glw_A 75 PLYSLQDAFSREELDAFDARVRKEVAHPTYICELKIDGLSISLTY-EKGILVAGVTRGDGSIGENITENLKRVK-DIPLT 152 (305)
T ss_dssp CCCCCCEECSHHHHHHHHHHHTTTCSSCCEEEEEEECSEEEEEEE-ETTEEEEEEECTTSSEEEECHHHHTTST-TSCSB
T ss_pred eeeccCCcCCHHHHHHHHHHHHHhcCCCcEEEEeeecceEEEEEE-eCCeEEEEEecCCCcchhhHHHHHhhcc-CCccc
Confidence 88853 233444432 1 2345679999999999999998 4776 8999999 899986422211 12222
Q ss_pred cCCCCCCeEEEEEEEEEecCCCcccChhhHHhh-------------------hcccCCccccccceEEEEeeeeecCCcc
Q 003762 501 KKPSVRSFVLDCEIVAYDREKQKILPFQTLSTR-------------------ARKNVSLSDIKVDVCIYAFDILYRNGQP 561 (797)
Q Consensus 501 ~~~~v~~~ILDGElVa~d~~~g~~lpFq~L~~R-------------------~Rk~~~~~~~~~~v~~~vFDILylnG~~ 561 (797)
++ ....+.+=||++.-. ..|..+-.. +|..........++.|++|++..-+|.
T Consensus 153 l~-~~~~levRGEv~m~~------~~F~~~n~~~~~~g~~~faNpRNaaAGslrq~d~~~~~~r~L~f~~y~~~~~~~~- 224 (305)
T 4glw_A 153 LP-EELDITVRGECYMPR------ASFDQVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPSTR- 224 (305)
T ss_dssp CS-SCCCEEEEEEEECCH------HHHHHHHHHHHHTTCCCCSSHHHHHHHHHSSSBHHHHHHSCCEEEEEEESSSCSS-
T ss_pred CC-CcccccccceEEeeh------hhHHHHHHHHHhcCCccchhhhHHHhhhhhccCchhhhhhcceEEEeeecccccc-
Confidence 22 235688999999731 234443211 111100001245799999998865553
Q ss_pred ccCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHc----CC--ceeEEEeC
Q 003762 562 LLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDA----SC--EGLIIKTM 619 (797)
Q Consensus 562 L~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~----g~--EGlmvK~~ 619 (797)
....++.+.|+++-=.+..... .+.+.+++.+++++..+. .+ .|||+|--
T Consensus 225 ---~s~~e~l~~L~~~Gf~~~~~~~-----~~~~~~ev~~~~~~~~~~R~~l~y~iDGiVikvn 280 (305)
T 4glw_A 225 ---DSQEKGLKYLEQLGFVVNPKRI-----LAENIDEIWNFIQEVGQERENLPYDIDGVVIKVN 280 (305)
T ss_dssp ---SBHHHHHHHHHHHTCCCCCCCE-----EESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEEC
T ss_pred ---chHHHHHHHHHhCCCccCCceE-----EeCCHHHHHHHHHHHHHHhhcCCCCCCeEEEEEe
Confidence 3678899999887333222222 367889999998887653 23 49999964
No 24
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=97.56 E-value=0.00018 Score=83.46 Aligned_cols=220 Identities=16% Similarity=0.187 Sum_probs=131.9
Q ss_pred CceEEEeecceEEEEEEEecCCe-EEEEec----CCCccCCCcchHHHHHHhhcCC-C-CCCeEEEEEEEEEecCCCccc
Q 003762 453 MEFTCEYKYDGERAQIHYLEDGS-VEIYSR----NAERNTGKFPDVVLAVSRLKKP-S-VRSFVLDCEIVAYDREKQKIL 525 (797)
Q Consensus 453 ~~~~~E~KyDG~R~qih~~~~g~-V~ifSR----~gkd~T~~yPel~~~l~~~~~~-~-v~~~ILDGElVa~d~~~g~~l 525 (797)
..|+||+|+||.-+-+.+ ++|. ++..|| .|+|+|+...-+. .+...+.. . -..+.+=||++.-. .
T Consensus 108 ~~~~~epKiDGlavsL~Y-e~G~Lv~a~TRGDG~~GeDiT~nvrtI~-~IPl~l~~~~~p~~leVRGEv~m~~------~ 179 (586)
T 4glx_A 108 VTWCCELKLDGLAVSILY-ENGVLVSAATRGDGTTGEDITSNVRTIR-AIPLKLHGENIPARLEVRGEVFLPQ------A 179 (586)
T ss_dssp -CEEEEEEESSEEEEEEE-ETTEEEEEEECTTSSEEEBCHHHHTTCT-TSCSBCCSSSCCSEEEEEEEEECCH------H
T ss_pred ceEEEEEeecceEEEEEE-eCCEEEEEEccCCCcccccHHHHHHhcc-CcccccccCCCCceEEEEEEEEEEh------h
Confidence 468999999999999999 4777 899999 5888885321111 01111110 1 13577889999731 2
Q ss_pred ChhhHHhh-------------------hcccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCcEE
Q 003762 526 PFQTLSTR-------------------ARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQ 586 (797)
Q Consensus 526 pFq~L~~R-------------------~Rk~~~~~~~~~~v~~~vFDILylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~ 586 (797)
.|..+-.. .|..........++.|++|++...+|..+. ....++.+.|+++-=++.....
T Consensus 180 ~F~~ln~~~~~~g~~~faNpRNaaAGslrqld~~~~a~r~L~f~~y~v~~~~~~~~~-~t~~e~l~~L~~~Gf~v~~~~~ 258 (586)
T 4glx_A 180 GFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELP-DTHLGRLLQFKKWGLPVSDRVT 258 (586)
T ss_dssp HHHHHHHHHHHTTCCCCSCHHHHHHHHHTCSCHHHHHTSCCEEEEEEEEEEESSCCC-SBHHHHHHHHHHTTCCCCTTCE
T ss_pred hccccchhhhhccCccchhhHHHHhccccccchhhhhccccceeEeeeeeeeccccc-ccHHHHHHHHHHcCCCCcccee
Confidence 35444221 111100011246899999999888776543 4678999999887333333333
Q ss_pred EEeEEecCCHHHHHHHHHHHHHc------CCceeEEEeCCCCCCccC--C--CCCCCe---EEEccccccccCCccceEE
Q 003762 587 FATTLTSIDLDEIQKFLDAAVDA------SCEGLIIKTMDRDATYEP--S--KRSLNW---LKLKKDYIESIGDSLDLVP 653 (797)
Q Consensus 587 ~v~~~~~~~~eei~~~f~~ai~~------g~EGlmvK~~~~ds~Y~p--G--kRs~~W---lKlK~dY~~~~~dtlDlvV 653 (797)
.+.+.+++.+++++..+. --.|||+|-- +-.+.. | .+.+.| +|+..+ ...-.|
T Consensus 259 -----~~~~~~~~~~~~~~~~~~R~~l~y~iDGiVikvn--~~~~~~~lG~ts~~PrwAiA~Kfp~e-------~~~T~v 324 (586)
T 4glx_A 259 -----LCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVN--SLAQQEQLGFVARAPRWAVAFKFPAQ-------EQMTFV 324 (586)
T ss_dssp -----EESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEES--BHHHHHHHCBCSSSBSSEEEECCCCC-------EEEEEE
T ss_pred -----eeccHHHHHHHHHHHHHhhhcccccCCceEEEec--chhhhhccCCccCCCCeeEEEcccch-------hheeEe
Confidence 357889999988887654 3389999974 322221 1 356778 555543 445566
Q ss_pred EeEEeCCCCcCCccceEEEEEecCC--CceEEEeccccCCCCHHHHHHHH
Q 003762 654 IAAFHGRGKRTGVYGAFLLACYDSN--NEEFQSICKIGTGFSEAMLEERS 701 (797)
Q Consensus 654 IGa~~G~Gkr~g~~gsfllg~~d~~--~g~~~~vgkVGTGfSd~~l~~l~ 701 (797)
.+..|.-| |+|.++.. |..++- .|. +|.++ |..+.++.+++.
T Consensus 325 ~~I~~qVG-RTG~iTPv--A~lePV~l~G~--tVsra-TLhN~~~I~~~d 368 (586)
T 4glx_A 325 RDVEFQVG-RTGAITPV--ARLEPVHVAGV--LVSNA-TLHNADEIERLG 368 (586)
T ss_dssp EEEEEEEC-TTSBEEEE--EEEEEEEETTE--EEEEE-ECCCHHHHHHHT
T ss_pred EEEEEecC-CceEEEEE--EEEeeEEeCCE--EEEec-ccCCHHHHHhcC
Confidence 66666555 56665554 333331 243 34444 678888877643
No 25
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=97.52 E-value=0.00023 Score=83.77 Aligned_cols=216 Identities=16% Similarity=0.183 Sum_probs=130.0
Q ss_pred ceEEEeecceEEEEEEEecCCe-EEEEec----CCCccCCCcchHHHHHHhhcCC-C-CCCeEEEEEEEEEecCCCcccC
Q 003762 454 EFTCEYKYDGERAQIHYLEDGS-VEIYSR----NAERNTGKFPDVVLAVSRLKKP-S-VRSFVLDCEIVAYDREKQKILP 526 (797)
Q Consensus 454 ~~~~E~KyDG~R~qih~~~~g~-V~ifSR----~gkd~T~~yPel~~~l~~~~~~-~-v~~~ILDGElVa~d~~~g~~lp 526 (797)
.|+||+|+||.-+-+.+. +|. |+..|| .|+|+|....-|. .|+..+.. + ...+.+=||++.-. ..
T Consensus 109 ~~~~e~KiDGlaisL~Ye-~G~Lv~a~TRGDG~~GEdvT~n~rtI~-~IP~~l~~~~~p~~levRGEv~m~~------~~ 180 (671)
T 2owo_A 109 TWCCELKLDGLAVSILYE-NGVLVSAATRGDGTTGEDITSNVRTIR-AIPLKLHGENIPARLEVRGEVFLPQ------AG 180 (671)
T ss_dssp CEEEEEEESSEEEEEEEE-TTEEEEEECCTTSSEEEBCHHHHHTCT-TSCSBCCSSSCCSEEEEEEEEECCH------HH
T ss_pred eEEEEEecceEEEEEEEe-CCEEEEEEecCCCcchhhHHHHHhhhc-CCCccccCCCCCCeEEEEEEEEEEH------HH
Confidence 699999999999999994 776 789999 6788885421111 11112221 0 13388999999742 24
Q ss_pred hhhHHhh-------------------hcccCCccccccceEEEEeeeeecCC-ccccCCcHHHHHHHHHHhhccCCCcEE
Q 003762 527 FQTLSTR-------------------ARKNVSLSDIKVDVCIYAFDILYRNG-QPLLQEQLRVRREHLYDSFEEEPGFFQ 586 (797)
Q Consensus 527 Fq~L~~R-------------------~Rk~~~~~~~~~~v~~~vFDILylnG-~~L~~~Pl~ERr~lL~~l~~~~~~~i~ 586 (797)
|..+-.+ .|..........++.|++|++...+| .. -....++.+.|+++-=++.....
T Consensus 181 F~~lN~~~~~~g~~~faNpRNaaAGsLrqld~~~~a~R~L~~~~y~~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~~~~ 258 (671)
T 2owo_A 181 FEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL--PDTHLGRLLQFKKWGLPVSDRVT 258 (671)
T ss_dssp HHHHHHHHHHSSCCCCSCHHHHHHHHHTCSCHHHHHTSCCEEEEEEEEEEESSCC--CSBHHHHHHHHHHHTCCCCTTCE
T ss_pred HHHHHHHHHhcCCCcccChHHHHHHHHHhcChhhHhcCCCEEEEEECcccCCCCC--CCCHHHHHHHHHHCCCCCCCcce
Confidence 5554221 11110000125689999999965554 32 25888999999998544443333
Q ss_pred EEeEEecCCHHHHHHHHHHHHHc------CCceeEEEeCCCCCCcc----CCCCCCCe---EEEccccccccCCccceEE
Q 003762 587 FATTLTSIDLDEIQKFLDAAVDA------SCEGLIIKTMDRDATYE----PSKRSLNW---LKLKKDYIESIGDSLDLVP 653 (797)
Q Consensus 587 ~v~~~~~~~~eei~~~f~~ai~~------g~EGlmvK~~~~ds~Y~----pGkRs~~W---lKlK~dY~~~~~dtlDlvV 653 (797)
+ +.+.+++.++++++.+. .-.|+|+|-- +-.+. .-.|.+.| +|+..+ ...-.+
T Consensus 259 ~-----~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~--~~~~q~~LG~t~k~PrWAiA~Kfpae-------~~~T~l 324 (671)
T 2owo_A 259 L-----CESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVN--SLAQQEQLGFVARAPRWAVAFKFPAQ-------EQMTFV 324 (671)
T ss_dssp E-----ESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEES--BHHHHHHHCBCSSSBSSEEEEECCCC-------EEEEEE
T ss_pred e-----eCCHHHHHHHHHHHHHHHhcCCCCCccEEEEec--CHHHHHHhCcccCCCCceEEEcCCCc-------eEEEEE
Confidence 3 67899999999998543 4489999974 33332 12467788 777765 344455
Q ss_pred EeEEeCCCCcCCccceEEEEEecCC--CceEEEeccccCCCCHHHHHH
Q 003762 654 IAAFHGRGKRTGVYGAFLLACYDSN--NEEFQSICKIGTGFSEAMLEE 699 (797)
Q Consensus 654 IGa~~G~Gkr~g~~gsfllg~~d~~--~g~~~~vgkVGTGfSd~~l~~ 699 (797)
.+..+.-| |+|.++.. |..+|- .|.. |.++ |--+.++.++
T Consensus 325 ~~I~~qVG-RTG~iTPv--A~lePV~l~G~t--VsrA-TLHN~d~i~~ 366 (671)
T 2owo_A 325 RDVEFQVG-RTGAITPV--ARLEPVHVAGVL--VSNA-TLHNADEIER 366 (671)
T ss_dssp EEEEEEEC-TTSBEEEE--EEEEEEEETTEE--EEEE-ECCSHHHHHH
T ss_pred EEEEEecC-CCceeeeE--EEEEeEEECCEE--EEec-cCCCHHHHHH
Confidence 55555444 56766654 444431 2433 3343 4555555554
No 26
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=97.45 E-value=0.00028 Score=76.28 Aligned_cols=153 Identities=19% Similarity=0.193 Sum_probs=97.8
Q ss_pred CceEEEeecceEEEEEEEecCCe-EEEEec----CCCccCCCcchHHHHHHhhcCC-C-CCCeEEEEEEEEEecCCCccc
Q 003762 453 MEFTCEYKYDGERAQIHYLEDGS-VEIYSR----NAERNTGKFPDVVLAVSRLKKP-S-VRSFVLDCEIVAYDREKQKIL 525 (797)
Q Consensus 453 ~~~~~E~KyDG~R~qih~~~~g~-V~ifSR----~gkd~T~~yPel~~~l~~~~~~-~-v~~~ILDGElVa~d~~~g~~l 525 (797)
-.|+||+|+||.-+-+.+ ++|. |+..|| .|+|+|....-|. .|...+.. + -..+.+=||++.-. .
T Consensus 107 ~~~~~EpKiDGlaisL~Y-e~G~Lv~a~TRGDG~~GEDVT~nvrtI~-~IPl~L~~~~~p~~leVRGEv~m~~------~ 178 (322)
T 3uq8_A 107 LTFCCEPKLDGLAVSILY-VNGELTQAATRGDGTTGEDITANIRTIR-NVPLQLLTDNPPARLEVRGEVFMPH------A 178 (322)
T ss_dssp CEEEEEEEESSEEEEEEE-ETTEEEEEEECTTSSEEEBCHHHHHTCT-TSCSBCSCSSCCSEEEEEEEEECCH------H
T ss_pred ceEEEEEeeceEEEEEEE-eCCEEEEEEecCCCccchhHHHHHHHhc-CCCccccCCCCCceEEEEEEEEeeH------H
Confidence 369999999999999998 4776 789999 5888886421111 11111211 0 13578999999742 2
Q ss_pred ChhhHHhh-------------------hcccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCcEE
Q 003762 526 PFQTLSTR-------------------ARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQ 586 (797)
Q Consensus 526 pFq~L~~R-------------------~Rk~~~~~~~~~~v~~~vFDILylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~ 586 (797)
.|+.+-.+ +|..........++.|++|++...+|..+ ..+..++.+.|+++-=++.....
T Consensus 179 ~F~~lN~~~~~~g~~~faNPRNaAAGsLRqld~~ita~R~L~ff~y~~~~~~~~~~-~~t~~e~l~~L~~~Gf~v~~~~~ 257 (322)
T 3uq8_A 179 GFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDL-PTTHYARLQWLKSIGIPVNPEIR 257 (322)
T ss_dssp HHHHHHHHHHHTTCCCCSSHHHHHHHHHTCSCHHHHTTSCCEEEEEEEEEEESCCC-CSBHHHHHHHHHHTTCCCCTTCE
T ss_pred HHHHHHHHHHHhCCccccchhHHHHHHHhhcChhhhhcCccEEEEEeccccCCCCC-CCCHHHHHHHHHHcCCCCCCCcE
Confidence 35544211 11100000124679999999987666432 35789999999988433333333
Q ss_pred EEeEEecCCHHHHHHHHHHHHHc------CCceeEEEeC
Q 003762 587 FATTLTSIDLDEIQKFLDAAVDA------SCEGLIIKTM 619 (797)
Q Consensus 587 ~v~~~~~~~~eei~~~f~~ai~~------g~EGlmvK~~ 619 (797)
.+.+.+++.++++...+. .-.|||+|--
T Consensus 258 -----~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn 291 (322)
T 3uq8_A 258 -----LCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKIN 291 (322)
T ss_dssp -----EEESHHHHHHHHHHHHHTTTTTSSCEEEEEEEES
T ss_pred -----EeCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Confidence 356889999999988554 3379999974
No 27
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=97.42 E-value=0.00059 Score=73.79 Aligned_cols=168 Identities=19% Similarity=0.216 Sum_probs=116.4
Q ss_pred ccccccccCChHHHHhhcCCCceEEEeecceEEEEEEEecCCeEEEEecCCCccC---CCcchHHHHHHhhcCCCCCCeE
Q 003762 433 GPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNT---GKFPDVVLAVSRLKKPSVRSFV 509 (797)
Q Consensus 433 ~PMLA~~~~~i~~~l~k~~g~~~~~E~KyDG~R~qih~~~~g~V~ifSR~gkd~T---~~yPel~~~l~~~~~~~v~~~I 509 (797)
+.||+.-.-++++-+ +.+|++=+===|.||+|+. ..|...+++|+|..+. ...|.-...-.. +-.-+|
T Consensus 106 qlMlsEWl~dvP~dL----~~~W~~vpcPvGkRcLVVa-s~G~T~aysk~G~~l~~F~S~LPGG~~~~s~----~~~~TI 176 (365)
T 3gjx_B 106 QLMLSEWLIDVPSDL----GQEWIVVVCPVGKRALIVA-SRGSTSAYTKSGYCVNRFSSLLPGGNRRNST----AKDYTI 176 (365)
T ss_dssp CSEEEEECCSCCTTH----HHHEEEEEEESSEEEEEEE-ETTEEEEECTTCCEEEEECCSSTTTCC--------CCCCEE
T ss_pred hHHHHHhcccCCccc----ccCeeEEeccCCcEEEEEe-cCceEEEECCCCCEEeeeCCCCCCCCccccC----CCCCEE
Confidence 467876544443322 1368777777899999998 4889999999997642 222321110000 225799
Q ss_pred EEEEEEEEecCCCcccChhhHHhhhcccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCC-------
Q 003762 510 LDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEP------- 582 (797)
Q Consensus 510 LDGElVa~d~~~g~~lpFq~L~~R~Rk~~~~~~~~~~v~~~vFDILylnG~~L~~~Pl~ERr~lL~~l~~~~~------- 582 (797)
|||=. +.. .-+|+|.|||.++|.++.+....-|.-.|++-+.+.+
T Consensus 177 LDCIy---~e~-------------------------~~tyYVLDVL~W~g~~l~dCeteFRffWl~SKL~E~~~l~e~s~ 228 (365)
T 3gjx_B 177 LDCIY---NEV-------------------------NQTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTK 228 (365)
T ss_dssp EEEEE---ETT-------------------------TTEEEEEEEEEETTEECTTSCHHHHHHHHHHHGGGSTTTTSCCS
T ss_pred EEEEe---ecC-------------------------CceEEEEEEeeeCCcccccCchHHHHHHHHHHhhhccccccccc
Confidence 99853 321 1279999999999999999999999999999887742
Q ss_pred ---CcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeCCCCCCccCCCCCCCeEEEccccc
Q 003762 583 ---GFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYI 642 (797)
Q Consensus 583 ---~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~~~ds~Y~pGkRs~~WlKlK~dY~ 642 (797)
-.|..++...++ .+.+.+.+..-..--..||.+=.. .+.|.+|. ++-+.=+|| ||
T Consensus 229 ~np~~Fv~lp~~~C~-~esL~~~ls~~~pfe~DGLLFYHK--~ahY~~G~-TPLVgWLkP-yM 286 (365)
T 3gjx_B 229 LNPFKFVGLKNFPCT-PESLCDVLSMDFPFEVDGLLFYHK--QTHYSPGS-TPLVGWLRP-YM 286 (365)
T ss_dssp SCCSEEEECCEEECC-HHHHHHHTTCCCSSCEEEEEEEET--TCCCCSEE-EEEEEEECH-HH
T ss_pred CCCCceeccCCCCcC-HHHHHHHhccCCCCccceEEEEec--cccccCCC-Cccceecch-hh
Confidence 245566777775 466666665555556889999999 99999984 555555556 54
No 28
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=97.27 E-value=0.00046 Score=74.42 Aligned_cols=171 Identities=18% Similarity=0.235 Sum_probs=105.3
Q ss_pred CCceEEEeecceEEEEEEEecCCe-EEEEec----CCCccCCCcchHHHHHHhhcCCCCCCeEEEEEEEEEecCCCcccC
Q 003762 452 DMEFTCEYKYDGERAQIHYLEDGS-VEIYSR----NAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILP 526 (797)
Q Consensus 452 g~~~~~E~KyDG~R~qih~~~~g~-V~ifSR----~gkd~T~~yPel~~~l~~~~~~~v~~~ILDGElVa~d~~~g~~lp 526 (797)
..+|+||+|+||.-+-+.+. +|. |+..|| .|+|+|....-|. .|...+. +...+.+=||++.-- ..
T Consensus 104 ~~~~~~EpKiDGlaisL~Ye-~G~Lv~a~TRGDG~~GEDVT~nvrtI~-~IP~~L~-~~~~levRGEv~m~~------~~ 174 (318)
T 3jsl_A 104 NVEYMCELKIDGLAVSLKYV-DGYFVQGLTRGDGTTGEDITENLKTIH-AIPLKMK-EPLNVEVRGEAYMPR------RS 174 (318)
T ss_dssp SCCEEEEEEECSEEEEEEEE-TTEEEEEEECTTSSEEEBCHHHHTTCT-TSCSBCS-SCCCEEEEEEEECCH------HH
T ss_pred CceEEEEEeecceEEEEEEE-CCEEEEEEeCCCCccchhHHHHHHHhc-CCccccC-CCCcEEEEEEEEEcH------HH
Confidence 34799999999999999984 776 789999 6888886432111 1121122 113688999999731 23
Q ss_pred hhhHHhh-------------------hcccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCcEEE
Q 003762 527 FQTLSTR-------------------ARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQF 587 (797)
Q Consensus 527 Fq~L~~R-------------------~Rk~~~~~~~~~~v~~~vFDILylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~~ 587 (797)
|..+-.+ +|..........++.|++|++...+|.. -....++.+.|+++-=++.....
T Consensus 175 F~~lN~~~~~~g~~~faNPRNaAAGsLRqld~~ita~R~L~ff~y~~~~~~~~~--~~t~~e~l~~L~~~GF~v~~~~~- 251 (318)
T 3jsl_A 175 FLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFN--ARSQSEALDELDKLGFTTNKNRA- 251 (318)
T ss_dssp HHHHHHHHBTTBCCCCSSHHHHHHHHHSCSCHHHHHHSCCEEEEEEESCCTTCC--CSBHHHHHHHHHHHTCCCCTTCE-
T ss_pred HHHHHHHHHHhCCccccChHHHHHHHHHccChhhhhhCcceEEEEecccccCCC--CCCHHHHHHHHHHCCCCcCCcce-
Confidence 4443221 1110000012468999999998765533 25788999999987333333322
Q ss_pred EeEEecCCHHHHHHHHHHHHH------cCCceeEEEeCCCCCCcc----CCCCCCCe---EEEccc
Q 003762 588 ATTLTSIDLDEIQKFLDAAVD------ASCEGLIIKTMDRDATYE----PSKRSLNW---LKLKKD 640 (797)
Q Consensus 588 v~~~~~~~~eei~~~f~~ai~------~g~EGlmvK~~~~ds~Y~----pGkRs~~W---lKlK~d 640 (797)
.+.+.+++.+++++..+ -.-.|||+|-- +-.+. .-.|.+.| +|+.++
T Consensus 252 ----~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn--~~~~q~~LG~t~k~PRWAiAyKfp~~ 311 (318)
T 3jsl_A 252 ----RVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVN--DLDQQDEMGFTQKSPRWAIAYKFPAE 311 (318)
T ss_dssp ----EESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEES--BHHHHHHHCBCSSSBTTEEEEECC--
T ss_pred ----EeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEEe--CHHHHHHhCCCCCCCCceEEECCCCc
Confidence 35789999999988753 24579999975 33322 12355677 565553
No 29
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=97.19 E-value=0.00079 Score=79.24 Aligned_cols=211 Identities=15% Similarity=0.149 Sum_probs=127.1
Q ss_pred cccccc-ccCChHHHH---hhcCC-----CceEEEeecceEEEEEEEecCCeEEEEec----CCCccCCCcchHHHHHHh
Q 003762 433 GPMLAK-PTKGVSEIV---NKFQD-----MEFTCEYKYDGERAQIHYLEDGSVEIYSR----NAERNTGKFPDVVLAVSR 499 (797)
Q Consensus 433 ~PMLA~-~~~~i~~~l---~k~~g-----~~~~~E~KyDG~R~qih~~~~g~V~ifSR----~gkd~T~~yPel~~~l~~ 499 (797)
.|||.- .+-+.+++. ++... -.|+||+|+||.-+ +.+ ++|. +..|| .|+|+|....-|.. |+.
T Consensus 80 ~pMlSL~n~~~~~el~~f~~rv~~~~~~~~~~~~e~KiDGlai-L~Y-e~G~-~a~TRGDG~~GedvT~n~rtI~~-iP~ 155 (667)
T 1dgs_A 80 TRMYSLDNAFTYEEVLAFEERLEREAEAPSLYTVEHKVDGLSV-LYY-EEGV-WSTGSGDGEVGEEVTQNLLTIPT-IPR 155 (667)
T ss_dssp SCCCCCCEECSHHHHHHHHHHTTSSSCSCCEEEEEECCSCEEE-EEE-ETTE-EEEEECSSSEEEBCTGGGTSSTT-SCS
T ss_pred CcCcCccccCCHHHHHHHHHHHHHhcCCCceEEEEEccceeEE-EEE-cCCC-EEEeeCCCcchhhHHHHHhhhcC-CCc
Confidence 389863 233444432 23221 24999999999999 888 5888 99999 68999976433221 222
Q ss_pred hcCCCCCCeEEEEEEEEEecCCCcccChhhHHhh-------------------hcccCCccccccce--EEEEeeeee-c
Q 003762 500 LKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTR-------------------ARKNVSLSDIKVDV--CIYAFDILY-R 557 (797)
Q Consensus 500 ~~~~~v~~~ILDGElVa~d~~~g~~lpFq~L~~R-------------------~Rk~~~~~~~~~~v--~~~vFDILy-l 557 (797)
.+......+.+=||++.-. ..|+.+-.+ +|..........++ .|++|++++ .
T Consensus 156 ~l~~~p~~levRGEv~m~~------~~F~~lN~~~~~~g~~~faNpRNaaAGsLrqld~~~~a~r~L~~~~~~y~~~~~~ 229 (667)
T 1dgs_A 156 RLKGVPDRLEVRGEVYMPI------EAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLGL 229 (667)
T ss_dssp BCSSCCSEEEEEEEEECCH------HHHHHHHHHHHHHTCCCCSSHHHHHHHHHSCSSHHHHHHSCCEEECCCBCTTTTT
T ss_pred ccCCCCCeEEEEEEEEEEH------HHHHHHHHHHHhcCCCcccChHHHHHHHHHhcChhhhhhCCCCCEEEEEEeeccC
Confidence 2221123488999998742 245554321 11100000114577 999999852 2
Q ss_pred CCccccCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHc------CCceeEEEeCCCCCCcc----C
Q 003762 558 NGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDA------SCEGLIIKTMDRDATYE----P 627 (797)
Q Consensus 558 nG~~L~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~------g~EGlmvK~~~~ds~Y~----p 627 (797)
++.. -.+..++.+.|+++-=++....++ +.+.+++.++++++.+. .-.|+|+|-- +-.+. .
T Consensus 230 ~~~~--~~t~~e~l~~L~~~Gf~v~~~~~~-----~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~--~~~~q~~LG~ 300 (667)
T 1dgs_A 230 EESG--LKSQYELLLWLKEKGFPVEHCYEK-----ALGAEGVEEVYRRGLAQRHALPFEADGVVLKLD--DLTLWGELGY 300 (667)
T ss_dssp TSCC--CCBHHHHHHHHHHTTCCCCSCEEE-----EEHHHHHHHHHHHHHHTTTTSSSCCCEEEEEES--BTHHHHHSCB
T ss_pred CCCC--CCCHHHHHHHHHHCCCCCCccceE-----eCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEec--CHHHHHHhCc
Confidence 3322 257889999999874344433333 45789999999988643 4589999975 33332 1
Q ss_pred CCCCCCe---EEEccccccccCCccceEEEeEEeCCCCcCCccceE
Q 003762 628 SKRSLNW---LKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAF 670 (797)
Q Consensus 628 GkRs~~W---lKlK~dY~~~~~dtlDlvVIGa~~G~Gkr~g~~gsf 670 (797)
-.|.+.| +|+..+ ...-.+.+..+.-| |+|.++..
T Consensus 301 t~k~PrWAiA~Kfpae-------~~~T~l~~I~~qVG-RTG~iTPv 338 (667)
T 1dgs_A 301 TARAPRFALAYKFPAE-------EKETRLLDVVFQVG-RTGRVTPV 338 (667)
T ss_dssp CSSCBSSEEEEECCCC-------CEEEEEEEEEEEEC-TTSBEEEE
T ss_pred ccCCCCceEEecCCCc-------eEEEEEEEEEEecC-CCceeeeE
Confidence 2367788 777765 44445555555544 56766554
No 30
>1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei} SCOP: d.142.2.4
Probab=97.14 E-value=0.0017 Score=68.17 Aligned_cols=181 Identities=20% Similarity=0.268 Sum_probs=99.3
Q ss_pred CCceEEEeecceEEEEEEEe-cCCe--EEEEecCCCcc-CCCc-------chHHHHH---HhhcC-----CCCCCeEEEE
Q 003762 452 DMEFTCEYKYDGERAQIHYL-EDGS--VEIYSRNAERN-TGKF-------PDVVLAV---SRLKK-----PSVRSFVLDC 512 (797)
Q Consensus 452 g~~~~~E~KyDG~R~qih~~-~~g~--V~ifSR~gkd~-T~~y-------Pel~~~l---~~~~~-----~~v~~~ILDG 512 (797)
+.+|.+.+|.||...-+.+. .++. |++.+|++.-- ++.| +++...+ .+.+. .....+++=|
T Consensus 32 ~~ewvatEKIHGaNFsii~~~d~~~~~i~~akRs~~l~~~e~FfGy~~i~~~l~~~~~~l~~~l~~~~~~~~~~~v~VyG 111 (277)
T 1xdn_A 32 AQEWVACEKVHGTNFGIYLINQGDHEVVRFAKRSGIMDPNENFFGYHILIDEFTAQIRILNDLLKQKYGLSRVGRLVLNG 111 (277)
T ss_dssp GSCEEEEEECCSEEEEEEEEEETTEEEEEEEETTEECCTTCCCTTGGGGHHHHHHHHHHHHHHHHHHHTCSCCSEEEEEE
T ss_pred CCcEEEEEeeccccEEEEEecCCCeeEEEEeecccccCcccccccHHHHHHHHHHHHHHHHHHHHHhhccCCccEEEEEE
Confidence 45899999999999988872 2445 89999997432 1222 4443322 22221 2357899999
Q ss_pred EEEEEec---CC-----------CcccChhhHHhhhcccCCccccccceEEEEeeeeecCC---ccccCCcHHHHHHHHH
Q 003762 513 EIVAYDR---EK-----------QKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNG---QPLLQEQLRVRREHLY 575 (797)
Q Consensus 513 ElVa~d~---~~-----------g~~lpFq~L~~R~Rk~~~~~~~~~~v~~~vFDILylnG---~~L~~~Pl~ERr~lL~ 575 (797)
|+..|.- .. .+..|+.. ..+.+++ ...-..+..|+||||.+.++ ++...++|.+=.+.+.
T Consensus 112 ELfGg~y~hp~v~~~~~~~~~~~~~~~p~~~--~~IQ~~i-~~~Y~p~~~FYaFDI~~~~~~~~~~~~~L~fd~~~~~~~ 188 (277)
T 1xdn_A 112 ELFGAKYKHPLVPKSEKWCTLPNGKKFPIAG--VQIQREP-FPQYSPELHFFAFDIKYSVSGAEEDFVLLGYDEFVEFSS 188 (277)
T ss_dssp EEEEEECCCTTSCCCCCEEECTTSCEEEGGG--CCSCCCS-SCCCEEEEEEEEEEEEEESSCCGGGEEECCHHHHHHHHH
T ss_pred EEecCccCCccccccccccccCccccCcccc--ccccccc-ccccCCCceEEEEEEEEecCCCccccccCCHHHHHHHHH
Confidence 9998751 00 00001100 0001111 00011378999999998752 2344678887777766
Q ss_pred HhhccCCCcEEEEeEEecCCHHHHHHHHHH----H------------HHcCCceeEEEeCCC-CCCccCCCCCCCeEEEc
Q 003762 576 DSFEEEPGFFQFATTLTSIDLDEIQKFLDA----A------------VDASCEGLIIKTMDR-DATYEPSKRSLNWLKLK 638 (797)
Q Consensus 576 ~l~~~~~~~i~~v~~~~~~~~eei~~~f~~----a------------i~~g~EGlmvK~~~~-ds~Y~pGkRs~~WlKlK 638 (797)
+. ++ +..++.....+.+++.++=.+ . -.+=+||+|+|.... ...|.+. ....-+|.|
T Consensus 189 ~~----~g-l~~ap~L~rGt~~e~~~~~~~~f~s~ip~~~g~~~~~~~~NiaEGvViKp~~~g~~~~~~~-g~r~iiK~K 262 (277)
T 1xdn_A 189 KV----PN-LLYARALVRGTLDECLAFDVENFMTPLPALLGLGNYPLEGNLAEGVVIRHVRRGDPAVEKH-NVSTIIKLR 262 (277)
T ss_dssp TS----TT-CEECCCSEEESHHHHHTCCGGGCBCSHHHHTTCTTSCCTTCBCCEEEEEETTTTCHHHHTT-CCCCEEEEE
T ss_pred Hh----cC-CCeeeeeeecCHHHHhhcccccccccchhhcCCCccCCCCCeeeeEEEeecccCCcccccC-CCeeEEEEe
Confidence 54 22 223333323344444432111 0 112289999998721 1245543 345899999
Q ss_pred ccc
Q 003762 639 KDY 641 (797)
Q Consensus 639 ~dY 641 (797)
.+-
T Consensus 263 ~~k 265 (277)
T 1xdn_A 263 CSS 265 (277)
T ss_dssp CHH
T ss_pred Chh
Confidence 863
No 31
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=97.08 E-value=0.00045 Score=80.41 Aligned_cols=192 Identities=17% Similarity=0.205 Sum_probs=115.6
Q ss_pred ceEEEeecceEEEEEEEecCCe-EEEEec----CCCccCCCcchHHHHHHhhcCCC-----CCCeEEEEEEEEEecCCCc
Q 003762 454 EFTCEYKYDGERAQIHYLEDGS-VEIYSR----NAERNTGKFPDVVLAVSRLKKPS-----VRSFVLDCEIVAYDREKQK 523 (797)
Q Consensus 454 ~~~~E~KyDG~R~qih~~~~g~-V~ifSR----~gkd~T~~yPel~~~l~~~~~~~-----v~~~ILDGElVa~d~~~g~ 523 (797)
.|+||+|+||.-+-+.+ ++|+ |+..|| .|+|+|....-|. .|...+... -..+.+=||++.--
T Consensus 117 ~~~~EpKiDGlavsL~Y-e~G~Lv~a~TRGDG~~GEDVT~nvrtI~-~IP~~L~~~~~~~~p~~levRGEv~m~~----- 189 (615)
T 3sgi_A 117 HYLCELKIDGVALSLVY-REGRLTRASTRGDGRTGEDVTLNARTIA-DVPERLTPGDDYPVPEVLEVRGEVFFRL----- 189 (615)
T ss_dssp CEEEEEEECSEEEEEEE-ETTEEEEEECCTTSSSCBCCHHHHHSCS-SSCSSCCCCSSCCCCSEEEEEEEEECCH-----
T ss_pred eEEEEEEecceEEEEEE-ECCEEEEEEecCCCcchhhHHHHHHhhc-CcchhhcCCcccCCCCeEEEEEEEEEeH-----
Confidence 69999999999999999 4776 789999 7889885421110 011112110 13588999999741
Q ss_pred ccChhhHHhh-------------------hcccCCccccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCc
Q 003762 524 ILPFQTLSTR-------------------ARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGF 584 (797)
Q Consensus 524 ~lpFq~L~~R-------------------~Rk~~~~~~~~~~v~~~vFDILylnG~~L~~~Pl~ERr~lL~~l~~~~~~~ 584 (797)
..|+.+-.+ +|........+.++.|++|++...+|.. -....++.+.|+++-=++...
T Consensus 190 -~~F~~lN~~~~~~g~~~faNpRNaAAGsLRqld~~ita~R~L~~f~y~~~~~~~~~--~~t~~e~l~~L~~~Gf~v~~~ 266 (615)
T 3sgi_A 190 -DDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFR--PATLHQAYLALRAWGLPVSEH 266 (615)
T ss_dssp -HHHHHHHTTCSSSSSCCCSSHHHHHHHHHTCSSTTHHHHSCCEEEEEEEEEEESCC--CSBTTTHHHHHHHTTCCCCCC
T ss_pred -HHHHHHHHHHHHcCCCcCCChHHHHHHHHHcCChhhHhhCcceEEEEeccccCCCC--CcCHHHHHHHHHHCCCCCCCC
Confidence 234433211 1111100012468999999998766533 235678889998873222222
Q ss_pred EEEEeEEecCCHHHHHHHHHHHHH------cCCceeEEEeCCCCCCccC----CCCCCCe---EEEccccccccCCccce
Q 003762 585 FQFATTLTSIDLDEIQKFLDAAVD------ASCEGLIIKTMDRDATYEP----SKRSLNW---LKLKKDYIESIGDSLDL 651 (797)
Q Consensus 585 i~~v~~~~~~~~eei~~~f~~ai~------~g~EGlmvK~~~~ds~Y~p----GkRs~~W---lKlK~dY~~~~~dtlDl 651 (797)
. ..+.+.+++.+++++..+ -.-.|||+|-- +-.|.. -.|.+.| +|+.++ ...-
T Consensus 267 ~-----~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn--~~~~q~~lG~t~k~PRWAiA~Kfpae-------e~~T 332 (615)
T 3sgi_A 267 T-----TLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVD--EVALQRRLGSTSRAPRWAIAYKYPPE-------EAQT 332 (615)
T ss_dssp C-----CCBSSHHHHHHHHTTTTTSGGGSSSCEEEEEEEES--BHHHHHHHCBCSSSBSSEEEEECCCS-------EEEE
T ss_pred e-----EeeCCHHHHHHHHHHHHHHhhcCCCCCCeEEEEec--CHHHHHHhCCCCCCCCceEEEcCCCc-------eeEE
Confidence 1 236789999999987633 34579999975 433321 2367788 777775 3333
Q ss_pred EEEeEEeCCCCcCCccceE
Q 003762 652 VPIAAFHGRGKRTGVYGAF 670 (797)
Q Consensus 652 vVIGa~~G~Gkr~g~~gsf 670 (797)
.+.+..+.-| |+|.++..
T Consensus 333 ~l~~I~~qVG-RTG~iTPv 350 (615)
T 3sgi_A 333 KLLDIRVNVG-RTGRITPF 350 (615)
T ss_dssp ECCEECCCBC-SSSCBCCB
T ss_pred EEEEEEEecC-CCceeeEE
Confidence 4545555444 45555543
No 32
>2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding; HET: APC; 2.21A {Bacteriophage T4}
Probab=96.75 E-value=0.0097 Score=65.68 Aligned_cols=142 Identities=13% Similarity=0.086 Sum_probs=87.8
Q ss_pred CceEEEeecceEEEEEEEecCCeEEEEecCCCccCC-----------CcchHHHHHHhhcCCCCCCeEEEEEEEEEecCC
Q 003762 453 MEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTG-----------KFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREK 521 (797)
Q Consensus 453 ~~~~~E~KyDG~R~qih~~~~g~V~ifSR~gkd~T~-----------~yPel~~~l~~~~~~~v~~~ILDGElVa~d~~~ 521 (797)
.++.++.|+||.-+.+.. .+|++.+.||++-.... .+.++.+.+..++. .++.+-||++.-. .
T Consensus 93 ~pv~V~eK~DGslv~~~~-~~G~l~~~SKgs~~~~~a~~~~~~l~~~~~~~l~~~~~~l~~---~~~t~~fE~~~pe--n 166 (375)
T 2c5u_A 93 DVDYILTKEDGSLVSTYL-DGDEILFKSKGSIKSEQALMANGILMNINHHRLRDRLKELAE---DGFTANFEFVAPT--N 166 (375)
T ss_dssp GEEEEEEECCSEEEEEEE-ETTEEEEEETTBSSSHHHHHHHHHHHSGGGHHHHHHHHHHHH---TTEEEEEEEECTT--S
T ss_pred CCEEEEEecCCeEEEEEE-ECCEEEEEeCCCCCChHHHHHHHHHhhhcchHHHHHHHHhcC---CCCEEEEEEcCCC--C
Confidence 479999999999976665 58999999999855311 11112222333333 5799999999732 1
Q ss_pred CcccChhhHHhhhcccCCccccccceEEEEeeeeecC-CccccCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHH
Q 003762 522 QKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRN-GQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQ 600 (797)
Q Consensus 522 g~~lpFq~L~~R~Rk~~~~~~~~~~v~~~vFDILyln-G~~L~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~ 600 (797)
.-++.+ ....+++|||..-+ |+- +|+.++.++.+ +--+....+. .. .+++.
T Consensus 167 ~hVl~Y-----------------~~~~L~L~~i~~n~tg~~---l~~~e~~~~a~-~g~~~V~~~~------~~-l~ell 218 (375)
T 2c5u_A 167 RIVLAY-----------------QEMKIILLNVRENETGEY---ISYDDIYKDAT-LRPYLVERYE------ID-SPKWI 218 (375)
T ss_dssp CSSSCC-----------------SSCEEEEEEEEETTTCCB---CCHHHHHHCTT-TGGGBCCEEE------CS-STHHH
T ss_pred ceeccC-----------------CCCCEEEEEEEEcCCCcE---ecHHHHHHHHh-hCCCcCceee------cc-HHHHH
Confidence 111111 12469999988755 444 69999987765 3212222222 11 23333
Q ss_pred HHHHHHHHcCCceeEEEeCCCCCCccCCCCCCCeEEEcccc
Q 003762 601 KFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDY 641 (797)
Q Consensus 601 ~~f~~ai~~g~EGlmvK~~~~ds~Y~pGkRs~~WlKlK~dY 641 (797)
+.... ..+.||+|+|.. + | .++|+|.++
T Consensus 219 ~~~~~--~~~~EGfVir~~--~-----g----~~~K~Kt~~ 246 (375)
T 2c5u_A 219 EEAKN--AENIEGYVAVMK--D-----G----SHFKIKSDW 246 (375)
T ss_dssp HHHHH--CSSCCEEEEEET--T-----S----CEEEEECHH
T ss_pred HHHhh--CCCCceEEEEec--C-----C----CEEEEecHH
Confidence 33222 578999999987 3 2 499999864
No 33
>4e6n_A Metallophosphoesterase; RNA repair, RNA ligase, ligase-activating, protein binding; HET: AMP; 2.39A {Clostridium thermocellum} PDB: 4drf_A* 3ty9_A* 3ty8_A* 3ty5_A*
Probab=96.67 E-value=0.0051 Score=66.90 Aligned_cols=166 Identities=19% Similarity=0.278 Sum_probs=105.9
Q ss_pred CceEEEeecceEEEEEEEec------------CC-eEEEEecCCCccCCCcchHH----HHHHhhc------C-CCCCCe
Q 003762 453 MEFTCEYKYDGERAQIHYLE------------DG-SVEIYSRNAERNTGKFPDVV----LAVSRLK------K-PSVRSF 508 (797)
Q Consensus 453 ~~~~~E~KyDG~R~qih~~~------------~g-~V~ifSR~gkd~T~~yPel~----~~l~~~~------~-~~v~~~ 508 (797)
...+||.|+=|-|+.+.+-. +| .=.+|+|+|..+-+. +++. ..++..+ . -+.+=+
T Consensus 81 ~~VVCEeKHMGSRAVv~vcRd~~~A~~rFGv~~g~~G~~yTRTGR~FF~d-~~l~~~ll~rlr~a~~~aglw~~l~tdWl 159 (427)
T 4e6n_A 81 GKVVCEQKHMGSRAVVIVCKDSQVAEKRFGVLDGTAGICYTRTGRHFFDD-MQLEAELIDRVRKVLDKSGFWGDFNTDWV 159 (427)
T ss_dssp CEEEEEECCCSEEEEEEEESSHHHHHHHHCCCSSCSEEEECTTSCBSCSC-HHHHHHHHHHHHHHHHHHTHHHHTTCSEE
T ss_pred ceEEeccccCCcceEEEEEcCHHHHHHhcCCCCCCcceeEecCCccccCC-chhHHHHHHHHHHHHHhcchHHHhCCcEE
Confidence 47899999999999776532 22 347999999987432 3332 2222211 1 134668
Q ss_pred EEEEEEEEEecCCCcccC--hh---------------hHHhhhc--------------ccCCc-----------------
Q 003762 509 VLDCEIVAYDREKQKILP--FQ---------------TLSTRAR--------------KNVSL----------------- 540 (797)
Q Consensus 509 ILDGElVa~d~~~g~~lp--Fq---------------~L~~R~R--------------k~~~~----------------- 540 (797)
.||||++-|+-+.+..+. |. .|..... ++.+.
T Consensus 160 ~LD~ELmPWSaKA~~Lir~QYA~VgaA~~a~l~~a~~~L~~A~~~~~~~~~~~~~~~~rg~dv~~Ll~r~~~r~~~~~~y 239 (427)
T 4e6n_A 160 CLDCELMPWSAKAQKLLEEQYSAVGISGRVVLDEAVKLLKQASLNKTVSFDVSRQTSGKNADINELLQRFTERSEMMQKY 239 (427)
T ss_dssp EEEEEEECTHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------CEECCHHHHHHHHHHHHHHHHHH
T ss_pred EeecccCCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccccccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 899999999743211100 00 0111110 00000
Q ss_pred ----------cccccceEEEEeeeeecCCccccCCcHHHHHHHHHHhhccCCCcE-----EEEeEEecCCHHHHHHHHHH
Q 003762 541 ----------SDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFF-----QFATTLTSIDLDEIQKFLDA 605 (797)
Q Consensus 541 ----------~~~~~~v~~~vFDILylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i-----~~v~~~~~~~~eei~~~f~~ 605 (797)
-+.-..+.+--|-||-..|....+.|..--.+.+..+....++.+ .+|....-.+.++...++.+
T Consensus 240 ~~AYr~YcWpv~gl~~~rlAPF~iLA~eg~~~~~~~H~WHm~~~~rl~~~d~~l~~~T~~~~VDl~d~~s~~~a~~WW~~ 319 (427)
T 4e6n_A 240 VEAYRKYCWPVNSIDDLKLAPFHILATEGKVHSDKNHIWHMDTIAKYCTQDDSLIMATNHILVDVTDAESVDKGIKWWED 319 (427)
T ss_dssp HHHHHTTCCCCSSGGGCEEEEEEEEEETTEECTTSCHHHHHHHHHHHHSTTCTTBCCCCEEEEETTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcCceeecchhhhhcccccccCCChHHHHHHHHHHHhcCccceeccccEEeeCCCHHHHHHHHHHHHH
Confidence 012347899999999999999999999988888888876655433 33332222345667789999
Q ss_pred HHHcCCceeEEEeC
Q 003762 606 AVDASCEGLIIKTM 619 (797)
Q Consensus 606 ai~~g~EGlmvK~~ 619 (797)
..+.|.||+|+|..
T Consensus 320 lT~~GgEGMVVKP~ 333 (427)
T 4e6n_A 320 LTASGGEGMVVKPY 333 (427)
T ss_dssp HHHTTCCEEEEEES
T ss_pred HhcCCCceeEecch
Confidence 99999999999998
No 34
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=94.72 E-value=0.1 Score=60.43 Aligned_cols=91 Identities=25% Similarity=0.324 Sum_probs=79.6
Q ss_pred CccchHHHHHHHHHHHhccch---HHHHHHHHHHHHhhhcCCCCchHHHHHHHhCccCCCccccccCCChHHHHHHHHHH
Q 003762 189 ERVPFIFLSLVFDMISNETGR---ILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEA 265 (797)
Q Consensus 189 ~~~~F~~la~~~e~I~~tssR---~~k~~iL~~~fr~~i~~~p~dl~~~vyL~~~~l~P~~e~~elGIge~~L~kal~~a 265 (797)
+++.-.++-+.|++|+..++. .+|.++|..+|..+ ++.+.-+.+.++++.+ ..|+++.++..||+++
T Consensus 113 ~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~l~~~~---~~~E~~~l~rli~~~l-------RiG~~~~~vl~ala~a 182 (558)
T 3gde_A 113 EELTVRKVRETFDEIASLTGEGSMKRKIMLLTGLYGLA---TPLEARYLTRLILNEM-------RLGVGEGIMRDAIARA 182 (558)
T ss_dssp CCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHC---CHHHHHHHHHHHTTCC-------CSSCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhC---CHHHHHHHHHHHhccc-------cccccHHHHHHHHHHH
Confidence 467788999999999988763 78899999999986 8899999999998754 5899999999999999
Q ss_pred hCCCHHHHHHHHHhcCCHHHHHhh
Q 003762 266 CGRTESHVKKQYQEMGDLGLVAKA 289 (797)
Q Consensus 266 ~G~s~~~ik~~y~~~GDlg~vA~~ 289 (797)
++++++.++..|....|++.|+..
T Consensus 183 ~~~~~~~~~~~~~~~~dl~~v~~~ 206 (558)
T 3gde_A 183 FRADPETVERAYMITNDLGRVAVV 206 (558)
T ss_dssp TTCCHHHHHHHHHHHCCHHHHHHH
T ss_pred hCCCHHHHHHHhccCCchHHHHHH
Confidence 999999999999999999887744
No 35
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=93.18 E-value=0.25 Score=57.26 Aligned_cols=92 Identities=15% Similarity=0.204 Sum_probs=80.0
Q ss_pred CccchHHHHHHHHHHHhccc---hHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCccCCCccccccCCChHHHHHHHHHH
Q 003762 189 ERVPFIFLSLVFDMISNETG---RILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEA 265 (797)
Q Consensus 189 ~~~~F~~la~~~e~I~~tss---R~~k~~iL~~~fr~~i~~~p~dl~~~vyL~~~~l~P~~e~~elGIge~~L~kal~~a 265 (797)
++++-.++-+.|++|+..++ +.+|.++|..+|..+ ++.+.-+.+.++++.+ ..|+++.++.+||+++
T Consensus 109 ~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~~~---~~~e~~~l~rli~~~l-------riG~~~~~vl~ala~a 178 (561)
T 2cfm_A 109 QPLTIKRVYQTLVKVAETTGEGSQDKKVKYLADLFMDA---EPLEAKYLARTILGTM-------RTGVAEGLLRDAIAMA 178 (561)
T ss_dssp CCCBHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHTCC-------CCCCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC---CHHHHHHHHHHHhccc-------cccccHHHHHHHHHHH
Confidence 46778899999999999876 467899999999886 8899999999999854 5899999999999999
Q ss_pred hCCCHHHHHHHHHhcCCHHHHHhhc
Q 003762 266 CGRTESHVKKQYQEMGDLGLVAKAS 290 (797)
Q Consensus 266 ~G~s~~~ik~~y~~~GDlg~vA~~~ 290 (797)
++.+...+++.|...+|++.++..+
T Consensus 179 ~~~~~~~v~~~~~~~~~l~~v~~~l 203 (561)
T 2cfm_A 179 FHVKVELVERAYMLTSDFGYVAKIA 203 (561)
T ss_dssp TTCCHHHHHHHHHHHCCHHHHHHHH
T ss_pred hcCCHHHHHHHHccCCCHHHHHHHH
Confidence 9999999999999999999887543
No 36
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=92.78 E-value=0.31 Score=57.15 Aligned_cols=92 Identities=25% Similarity=0.407 Sum_probs=79.8
Q ss_pred CccchHHHHHHHHHHHhccc---hHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCccCCCccccccCCChHHHHHHHHHH
Q 003762 189 ERVPFIFLSLVFDMISNETG---RILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEA 265 (797)
Q Consensus 189 ~~~~F~~la~~~e~I~~tss---R~~k~~iL~~~fr~~i~~~p~dl~~~vyL~~~~l~P~~e~~elGIge~~L~kal~~a 265 (797)
++++-.++-+.|++|+..++ +.+|+++|..+|+.+ ++.+.-+.+.++++.+ ..|+++.++.+||+++
T Consensus 137 ~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~~~---~~~E~k~l~Rli~~~l-------RiG~~~~~vl~ala~a 206 (621)
T 2hiv_A 137 ESLTVDEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKA---DPLEAKFLVRFVEGRL-------RVGIGDATVLDAMAIA 206 (621)
T ss_dssp CCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHTCC-------CCCCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC---CHHHHHHHHHHHcCCC-------ccCccHHHHHHHHHHH
Confidence 46788899999999999765 467899999999997 8899999999999864 5799999999999999
Q ss_pred hC---CCHHHHHHHHHhcCCHHHHHhhc
Q 003762 266 CG---RTESHVKKQYQEMGDLGLVAKAS 290 (797)
Q Consensus 266 ~G---~s~~~ik~~y~~~GDlg~vA~~~ 290 (797)
++ .....++..|....|++.++..+
T Consensus 207 ~~~~~~~~~~v~~~~~~~~dl~~v~~~l 234 (621)
T 2hiv_A 207 FGGGQSASEIIERAYNLRADLGNIAKII 234 (621)
T ss_dssp HSSSGGGHHHHHHHHHHSCCHHHHHHHH
T ss_pred hccccccHHHHHHHHhcCCCHHHHHHHH
Confidence 99 77888999999999999988543
No 37
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=90.41 E-value=0.49 Score=56.13 Aligned_cols=93 Identities=16% Similarity=0.130 Sum_probs=73.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHh---cCCChHHHHHHHHhhhc-------cCcccHHHHHHHHHH
Q 003762 300 PDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVA---ATDCEPQYLIRLLQSKL-------RIGLAEQTLLAALGQ 369 (797)
Q Consensus 300 ~~~LTI~eV~~~L~kIA~~~G~~s~~~K~~~L~~LL~~---~t~~E~k~LiRiIlkdL-------RiGi~e~tvl~Ala~ 369 (797)
..++...++-+++.+|++. .++-.|+++|..+|.. +++.|.-|.+.++++.| .+||+++++.++++.
T Consensus 53 ~~~~~~~~la~~~~~i~~t---~~r~~k~~~l~~~~~~~~~~~~~dl~~~v~ll~g~l~P~~~~~elgi~~~~L~k~i~~ 129 (688)
T 1x9n_A 53 GQKVPYLAVARTFEKIEEV---SARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQ 129 (688)
T ss_dssp TSCCBHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSSCGGGCCCCCCCHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHhhcCChHHHHHHHHHHcCCCCccccccccCcChHHHHHHHHH
Confidence 4678899999999999754 4677889999999999 79999999999999875 479999999999999
Q ss_pred hhccCCCCCCCCCCCcchHHHHHHHHHHHhhcCCchhhhHhhh
Q 003762 370 AAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPAL 412 (797)
Q Consensus 370 a~~~~~~~~~~~~~l~~~l~~a~~~vk~~y~~~pd~~~v~~~l 412 (797)
++..+. ..+++.|...-|++.++..+
T Consensus 130 ~~g~~~-----------------~~~~~~~~~~GDlg~va~~~ 155 (688)
T 1x9n_A 130 ATGRQL-----------------ESVRAEAAEKGDVGLVAENS 155 (688)
T ss_dssp HHTCCH-----------------HHHHHHHHHHTCHHHHTCC-
T ss_pred HHCcCH-----------------HHHHHHHHhcCCHHHHHHHH
Confidence 986542 12455666667777665433
No 38
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=89.32 E-value=0.77 Score=47.40 Aligned_cols=86 Identities=12% Similarity=0.201 Sum_probs=69.6
Q ss_pred CccchHHHHHHHHHHHhcc---chHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCccCCCccccccCCChHHHHHHHHHH
Q 003762 189 ERVPFIFLSLVFDMISNET---GRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEA 265 (797)
Q Consensus 189 ~~~~F~~la~~~e~I~~ts---sR~~k~~iL~~~fr~~i~~~p~dl~~~vyL~~~~l~P~~e~~elGIge~~L~kal~~a 265 (797)
+++.-.++-+.|++|+..+ +...|.++|..+|+.+ ++.|.-+.+.++++.+ ..|+++.++..++
T Consensus 141 ~~LTv~~V~~~L~~IA~~~g~~s~~~k~~~l~~Ll~~~---t~~E~k~liRiil~~l-------riG~~e~~vl~a~--- 207 (240)
T 4htp_A 141 GSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLITQS---SALEQKWLIRMIIKDL-------KLGVSQQTIFSVF--- 207 (240)
T ss_dssp CCCBHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---CHHHHHHHHHHHHTCC-------CCSSCHHHHHHHH---
T ss_pred CCcCHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHC---CHHHHHHHHHHHhccc-------ccCccHhHHHHHh---
Confidence 4677889999999998875 3556779999999886 7999999999999754 4899999988765
Q ss_pred hCCCHHHHHHHHHhcCCHHHHHhhcc
Q 003762 266 CGRTESHVKKQYQEMGDLGLVAKASR 291 (797)
Q Consensus 266 ~G~s~~~ik~~y~~~GDlg~vA~~~r 291 (797)
.- .....|.-++||+.||..+.
T Consensus 208 -h~---~~~~a~~~~~dL~~V~~~l~ 229 (240)
T 4htp_A 208 -HN---DAAELHNVTTDLEKVCRQLH 229 (240)
T ss_dssp -CT---THHHHHHHHCCHHHHHHHTC
T ss_pred -Ch---hHHHHHHhhCCHHHHHHHHh
Confidence 21 23668899999999998775
No 39
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=74.15 E-value=4.5 Score=46.91 Aligned_cols=85 Identities=13% Similarity=0.152 Sum_probs=68.5
Q ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCccCCCccccccCCChHHHHHHHHHHhCC
Q 003762 189 ERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGR 268 (797)
Q Consensus 189 ~~~~F~~la~~~e~I~~tssR~~k~~iL~~~fr~~i~~~p~dl~~~vyL~~~~l~P~~e~~elGIge~~L~kal~~a~G~ 268 (797)
+++.-.++=+.|++|+..++.....++|..+|..+ +|.|.-+.+.++++.+ ..|++++++..++..
T Consensus 116 ~~LTv~~V~~~L~~ia~~~g~~sq~~~l~~l~~~~---~~~E~k~l~R~i~~~l-------riG~~e~~vl~a~~~---- 181 (579)
T 3l2p_A 116 SLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRC---TANDLKCIIRLIKHDL-------KMNSGAKHVLDALDP---- 181 (579)
T ss_dssp CCCBHHHHHHHHHHHHTCCSHHHHHHHHHHHHTTC---CSHHHHHHHHHHTTCC-------SSSCCHHHHHHTTCT----
T ss_pred CCccHHHHHHHHHHHHhccCcHHHHHHHHHHHHhC---CHHHHHHHHHHHHhhh-------hcccchhHHHHHhCH----
Confidence 57888999999999999998888888999998776 8999999999988753 589999998877752
Q ss_pred CHHHHHHHHHhcCCHHHHHhhc
Q 003762 269 TESHVKKQYQEMGDLGLVAKAS 290 (797)
Q Consensus 269 s~~~ik~~y~~~GDlg~vA~~~ 290 (797)
.....|...+||+.|+..+
T Consensus 182 ---~a~~~~~~~~~l~~v~~~~ 200 (579)
T 3l2p_A 182 ---NAYEAFKASRNLQDVVERV 200 (579)
T ss_dssp ---THHHHHHHSCCHHHHHHHH
T ss_pred ---HHHHHHhhcCCHHHHHHHH
Confidence 1245677788988887543
No 40
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=43.17 E-value=37 Score=35.64 Aligned_cols=57 Identities=11% Similarity=0.066 Sum_probs=48.6
Q ss_pred cCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
..++.+||+++++.++....+++.++-..-.++.++..++-+.+.+.|..|+|+=.+
T Consensus 51 ~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 107 (294)
T 3b4u_A 51 CSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPP 107 (294)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 468999999999999987777766666666678889999999999999999999876
No 41
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=42.12 E-value=48 Score=34.95 Aligned_cols=57 Identities=14% Similarity=0.071 Sum_probs=49.6
Q ss_pred cCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
..++.+||+++++..++...+++.++-..-+++.++..++-+.+.+.|..|+|+=.+
T Consensus 63 ~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 119 (304)
T 3l21_A 63 PTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTP 119 (304)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 467899999999999887777777776666778899999999999999999999876
No 42
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=42.11 E-value=46 Score=35.10 Aligned_cols=65 Identities=8% Similarity=-0.032 Sum_probs=52.1
Q ss_pred eecCCc--cccCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 555 LYRNGQ--PLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 555 LylnG~--~L~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
++..|. .-..++.+||+++++.++....+++.++-..-+++.++..++-+.+.+.|..|+|+=.+
T Consensus 52 l~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 118 (307)
T 3s5o_A 52 FVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTP 118 (307)
T ss_dssp EEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred EEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 444542 23467899999999999888777777666666678889999999999999999999865
No 43
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=41.17 E-value=44 Score=34.93 Aligned_cols=60 Identities=10% Similarity=0.076 Sum_probs=49.9
Q ss_pred CccccCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 559 GQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 559 G~~L~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
|+. ..++.+||+++++..++...+++.++-..-+++.++..++-+.+.+.|..|+|+=.+
T Consensus 46 GE~-~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 105 (291)
T 3tak_A 46 GEA-STLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGADAALLVTP 105 (291)
T ss_dssp TTG-GGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred ccc-ccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 443 467899999999999887777766666666678899999999999999999999876
No 44
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=41.04 E-value=52 Score=34.42 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=52.4
Q ss_pred eecCCc--cccCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 555 LYRNGQ--PLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 555 LylnG~--~L~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
++..|. .-..++.+||+++++..+....+++.++-..-+++.++..++-+.+.+.|..|+|+=.+
T Consensus 42 l~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 108 (293)
T 1f6k_A 42 LYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTP 108 (293)
T ss_dssp EEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred EEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 444542 23468999999999999887777777776666778889999999999999999999876
No 45
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=40.96 E-value=58 Score=34.23 Aligned_cols=57 Identities=12% Similarity=0.034 Sum_probs=49.6
Q ss_pred cCCcHHHHHHHHHHhhccCCC-cEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPG-FFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~-~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
..++.+||+++++..++...+ ++.++-..-+++.++..++-+.+.+.|..|+|+=.+
T Consensus 55 ~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 112 (301)
T 3m5v_A 55 ATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAP 112 (301)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 467899999999999988777 777776666778899999999999999999999876
No 46
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=40.41 E-value=63 Score=34.02 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=49.1
Q ss_pred cCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
..++.+||+++++.++....+++.++-..-.++.++..++-+.+.+.|..|+|+=.+
T Consensus 64 ~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P 120 (304)
T 3cpr_A 64 PTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTP 120 (304)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 468999999999999887777777776666678899999999999999999999876
No 47
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=40.38 E-value=58 Score=34.06 Aligned_cols=57 Identities=7% Similarity=0.054 Sum_probs=48.7
Q ss_pred cCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
..++.+||+++++..+....+++.++-..-+++.++..++-+.+.+.|..|+|+=.+
T Consensus 48 ~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 104 (294)
T 2ehh_A 48 PTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVP 104 (294)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 467999999999999887777777766666678889999999999999999999876
No 48
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=40.14 E-value=49 Score=34.74 Aligned_cols=61 Identities=8% Similarity=-0.032 Sum_probs=50.4
Q ss_pred CCccccCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 558 NGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 558 nG~~L~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
.|+. ..++.+||+++++..++...+++.++-..-+++.++..++-+.+.+.|..|+|+=.+
T Consensus 51 tGE~-~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 111 (297)
T 3flu_A 51 TGES-ATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVP 111 (297)
T ss_dssp TTTG-GGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred ccCc-ccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 3443 567899999999999887777766666666678899999999999999999999876
No 49
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=39.80 E-value=49 Score=35.11 Aligned_cols=57 Identities=9% Similarity=0.058 Sum_probs=48.7
Q ss_pred cCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
..++.+||+++++..++...+++.++-..-+++.++..++-+.+.+.|..|+|+=.+
T Consensus 71 ~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P 127 (314)
T 3qze_A 71 ATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTP 127 (314)
T ss_dssp GGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 467899999999999887777766666666678899999999999999999999876
No 50
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=39.59 E-value=49 Score=34.60 Aligned_cols=57 Identities=7% Similarity=-0.082 Sum_probs=48.5
Q ss_pred cCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
..++.+||+++++.++....+++.++-..-+++.++..++-+.+.+.|..|+|+=.+
T Consensus 50 ~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 106 (292)
T 3daq_A 50 PTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITP 106 (292)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 467899999999999887777766666666678899999999999999999999876
No 51
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=39.36 E-value=56 Score=34.08 Aligned_cols=57 Identities=12% Similarity=-0.002 Sum_probs=48.7
Q ss_pred cCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
..++.+||+++++..+....+++.++-..-+++.++..++-+.+.+.|..|+|+=.+
T Consensus 48 ~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 104 (289)
T 2yxg_A 48 PTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITP 104 (289)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 467999999999999887777777766666678889999999999999999999876
No 52
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=38.68 E-value=46 Score=35.02 Aligned_cols=65 Identities=9% Similarity=0.037 Sum_probs=51.8
Q ss_pred eecCCc--cccCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 555 LYRNGQ--PLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 555 LylnG~--~L~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
++..|. .-..++.+||+++++.++....+++.++-..-+++.++..++-+.+.+.|..|+|+=.+
T Consensus 42 l~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 108 (300)
T 3eb2_A 42 LTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILE 108 (300)
T ss_dssp BBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred EEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 444542 23467899999999999887777766665666778899999999999999999999876
No 53
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=38.23 E-value=59 Score=34.20 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=48.7
Q ss_pred cCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
..++.+||+++++.++....+++.++-..-+++.++..++-+.+.+.|..|+|+=.+
T Consensus 59 ~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 115 (303)
T 2wkj_A 59 FVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTP 115 (303)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCC
Confidence 468999999999999887777777766666678889999999999999999999876
No 54
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=37.72 E-value=51 Score=34.88 Aligned_cols=56 Identities=9% Similarity=0.115 Sum_probs=48.5
Q ss_pred cCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
..++.+||+++++.++... +++.++-..-+++..+..++-+.+.+.|..|+|+=.+
T Consensus 56 ~~Lt~~Er~~v~~~~v~~~-grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 111 (313)
T 3dz1_A 56 PKLDAAEAEAVATRFIKRA-KSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPP 111 (313)
T ss_dssp GGSCHHHHHHHHHHHHHHC-TTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred hhCCHHHHHHHHHHHHHHc-CCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 4678999999999999888 7777776666778899999999999999999999655
No 55
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=37.08 E-value=56 Score=34.46 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=48.2
Q ss_pred cCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
..++.+||+++++..+....+++.++-..-.++.++..++-+.+.+.|..|+|+=.+
T Consensus 60 ~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P 116 (306)
T 1o5k_A 60 PTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTP 116 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCC
Confidence 467999999999999877667766666666678889999999999999999999876
No 56
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=37.07 E-value=59 Score=33.96 Aligned_cols=57 Identities=12% Similarity=0.019 Sum_probs=48.2
Q ss_pred cCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
..++.+||+++++..+....+++.++-..-.++.++..++-+.+.+.|..|+|+=.+
T Consensus 49 ~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P 105 (291)
T 3a5f_A 49 TTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITP 105 (291)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 467999999999999877667666666666678889999999999999999999876
No 57
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=36.28 E-value=61 Score=34.05 Aligned_cols=57 Identities=4% Similarity=-0.078 Sum_probs=48.1
Q ss_pred cCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
..++.+||+++++.++....+++.++-..-.++.++..++-+.+.+.|..|+|+=.+
T Consensus 60 ~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 116 (301)
T 1xky_A 60 PTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAP 116 (301)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 467899999999999877767766665656678889999999999999999999876
No 58
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=35.88 E-value=47 Score=35.26 Aligned_cols=65 Identities=6% Similarity=-0.043 Sum_probs=51.1
Q ss_pred eecCCc--cccCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 555 LYRNGQ--PLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 555 LylnG~--~L~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
++..|. .-..++.+||+++++.++....+++.++-..-+++.++..++-+.+.+.|..|+|+=.+
T Consensus 62 i~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 128 (315)
T 3na8_A 62 IAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPI 128 (315)
T ss_dssp EECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred EEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 444442 23467899999999999887767666665656678899999999999999999999765
No 59
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=35.40 E-value=53 Score=34.87 Aligned_cols=57 Identities=11% Similarity=0.012 Sum_probs=48.4
Q ss_pred cCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
..++.+||+++++.++....+++.++-..-+++..+..++-+.+.+.|..|+|+=.+
T Consensus 70 ~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P 126 (315)
T 3si9_A 70 PTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTP 126 (315)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred cccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 467899999999999887767666666666678899999999999999999999876
No 60
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=34.68 E-value=44 Score=35.38 Aligned_cols=57 Identities=9% Similarity=-0.104 Sum_probs=48.0
Q ss_pred cCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
..++.+||+++++..+....+++.++-..-+++.++..++-+.+.+.|..|+|+=.+
T Consensus 56 ~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 112 (309)
T 3fkr_A 56 FAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPP 112 (309)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 467899999999999887777766666666678889999999999999999999755
No 61
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=34.57 E-value=76 Score=33.56 Aligned_cols=57 Identities=7% Similarity=-0.046 Sum_probs=48.7
Q ss_pred cCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCC-ceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASC-EGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~-EGlmvK~~ 619 (797)
..++.+||+++++..++...+++.++-..-+++.++..++-+.+.+.|. .|+|+=.+
T Consensus 55 ~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P 112 (311)
T 3h5d_A 55 PTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVP 112 (311)
T ss_dssp GGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCC
Confidence 4678999999999999887777766666666788999999999999997 99999876
No 62
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=34.45 E-value=57 Score=34.08 Aligned_cols=65 Identities=15% Similarity=0.114 Sum_probs=50.9
Q ss_pred eecCCc--cccCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 555 LYRNGQ--PLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 555 LylnG~--~L~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
++..|. .-..++.+||+++++.++....+++.++-..-.++.++..++-+.+.+.|..|+|+=.+
T Consensus 38 l~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 104 (292)
T 2vc6_A 38 LVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSP 104 (292)
T ss_dssp EETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred EEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 445552 23468999999999999877666665655555667888999999999999999999876
No 63
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=34.27 E-value=73 Score=34.06 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=48.8
Q ss_pred cCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
..++.+||+++++.++....+++.++-..-.++.++..++-+.+.+.|..|+|+=.+
T Consensus 82 ~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P 138 (332)
T 2r8w_A 82 MYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPV 138 (332)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 467999999999999887777777766666778889999999999999999999876
No 64
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=33.72 E-value=59 Score=35.39 Aligned_cols=57 Identities=5% Similarity=-0.131 Sum_probs=48.8
Q ss_pred cCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
..++.+||+++++..+....+++.++-..-+++.++..++-+.+.+.|..|+|+=.+
T Consensus 107 ~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlvv~P 163 (360)
T 4dpp_A 107 QLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 163 (360)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 467899999999999887777777766666678899999999999999999999865
No 65
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=33.41 E-value=60 Score=34.89 Aligned_cols=57 Identities=11% Similarity=0.044 Sum_probs=48.3
Q ss_pred cCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
..++.+||+++++.++....+++.++-..-+++.++..++-+.+.+.|..|+|+=.+
T Consensus 79 ~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P 135 (343)
T 2v9d_A 79 SQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINP 135 (343)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 467999999999999887777766666666678889999999999999999999876
No 66
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=33.19 E-value=49 Score=35.16 Aligned_cols=57 Identities=7% Similarity=0.026 Sum_probs=48.1
Q ss_pred cCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
..++.+||+++++.++....+++.++-..-+++..+..++-+.+.+.|..|+|+=.+
T Consensus 59 ~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 115 (318)
T 3qfe_A 59 FLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPP 115 (318)
T ss_dssp GGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 467899999999999887777766666666678899999999999999999999654
No 67
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=33.11 E-value=54 Score=34.25 Aligned_cols=57 Identities=9% Similarity=-0.009 Sum_probs=47.9
Q ss_pred cCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
..++.+||+++++..+....+++.++-..-+++.++..++-+.+.+.|..|+|+=.+
T Consensus 49 ~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 105 (292)
T 2ojp_A 49 ATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTP 105 (292)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCC
Confidence 467999999999999877667666665656678888999999999999999999876
No 68
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=32.39 E-value=80 Score=33.41 Aligned_cols=64 Identities=13% Similarity=0.156 Sum_probs=51.2
Q ss_pred eecCCc--cccCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 555 LYRNGQ--PLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 555 LylnG~--~L~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
++..|. .-..++.+||+++++.++....+++.++-..-+ +.++..++-+.+.+.|..|+|+=.+
T Consensus 50 l~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P 115 (314)
T 3d0c_A 50 IVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQP 115 (314)
T ss_dssp ECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred EEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCC
Confidence 445552 234689999999999998877777777666666 8888999999999999999999876
No 69
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=31.30 E-value=59 Score=34.12 Aligned_cols=65 Identities=12% Similarity=0.028 Sum_probs=50.6
Q ss_pred eecCCc--cccCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 555 LYRNGQ--PLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 555 LylnG~--~L~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
++..|. .-..++.+||+++++..+....+++.++-..-+++.++..++-+.+.+.|..|+|+=.+
T Consensus 38 i~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 104 (297)
T 2rfg_A 38 LVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAG 104 (297)
T ss_dssp EECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred EEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 444442 23467999999999999877666666665555668889999999999999999999876
No 70
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=30.04 E-value=74 Score=33.68 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=50.5
Q ss_pred eeecCCc--cccCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 554 ILYRNGQ--PLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 554 ILylnG~--~L~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
-++..|. .-..++.+||+++++.++....+++.++-..- .+.++..++-+.+.+.|..|+|+=.+
T Consensus 49 Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg-~~t~~ai~la~~A~~~Gadavlv~~P 115 (316)
T 3e96_A 49 VIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIG-YATSTAIELGNAAKAAGADAVMIHMP 115 (316)
T ss_dssp EECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC-SSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred EEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeC-cCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3555552 23467899999999999887777776665553 48888999999999999999998755
No 71
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=25.59 E-value=1.3e+02 Score=31.16 Aligned_cols=54 Identities=9% Similarity=0.174 Sum_probs=44.8
Q ss_pred cCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
..++.+||+++++..+....+ ++-..-+++.++..++-+.+.+.|..|+|+=.+
T Consensus 47 ~~Ls~eEr~~v~~~~~~~~~g---ViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 100 (288)
T 2nuw_A 47 PALSKDEKRQNLNALYDVTHK---LIFQVGSLNLNDVMELVKFSNEMDILGVSSHSP 100 (288)
T ss_dssp GGSCHHHHHHHHHHHTTTCSC---EEEECCCSCHHHHHHHHHHHHTSCCSEEEECCC
T ss_pred hhCCHHHHHHHHHHHHHHhCC---eEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 468999999999999987766 444445567888999999999999999999876
No 72
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=25.22 E-value=1.3e+02 Score=31.24 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=44.8
Q ss_pred cCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
..++.+||+++++..+....+ ++-..-+++.++..++-+.+.+.|..|+|+=.+
T Consensus 46 ~~Ls~~Er~~v~~~~~~~~~g---vi~Gvg~~~t~~ai~la~~A~~~Gadavlv~~P 99 (286)
T 2r91_A 46 PALSLQEKMELTDAATSAARR---VIVQVASLNADEAIALAKYAESRGAEAVASLPP 99 (286)
T ss_dssp GGSCHHHHHHHHHHHHHHCSS---EEEECCCSSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred hhCCHHHHHHHHHHHHHHhCC---EEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 468999999999999887766 444445567888999999999999999999876
No 73
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=21.66 E-value=2.2e+02 Score=29.60 Aligned_cols=54 Identities=11% Similarity=0.119 Sum_probs=44.7
Q ss_pred cCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeC
Q 003762 563 LQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTM 619 (797)
Q Consensus 563 ~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~ 619 (797)
..++.+||+++++..+....+ ++-..-+++.++..++-+.+.+.|..|+|+=.+
T Consensus 47 ~~Ls~eEr~~v~~~~~~~~~g---viaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 100 (293)
T 1w3i_A 47 PSLSPEEKLENLKAVYDVTNK---IIFQVGGLNLDDAIRLAKLSKDFDIVGIASYAP 100 (293)
T ss_dssp GGSCHHHHHHHHHHHHTTCSC---EEEECCCSCHHHHHHHHHHGGGSCCSEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHHcCC---EEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 468899999999999887766 444444567888999999999999999999876
Done!