BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003763
(797 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 1004 bits (2595), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/792 (60%), Positives = 601/792 (75%), Gaps = 4/792 (0%)
Query: 1 MRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKW 60
MRDA+ KLGGD KINP+ PVDLVIDHS+QVD R +++Q N + EF RN+ERF FLKW
Sbjct: 119 MRDAVKKLGGDPEKINPICPVDLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKW 178
Query: 61 GSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXX 120
GS AF NM ++PPGSGI+HQVNLEYL RVVF+ +G YPDS+VGTDSHTTMID
Sbjct: 179 GSKAFRNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGVLGW 238
Query: 121 XXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVE 180
MLGQP+SMVLP V+G++L GK VT+TD+VLT+T+ LR+ GVVG FVE
Sbjct: 239 GVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVE 298
Query: 181 FYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRA 240
F+G G+++LS+ADRATIANM PEYGAT FFPVD V+++YL TGR + V I YL+A
Sbjct: 299 FFGPGVAQLSIADRATIANMCPEYGATATFFPVDEVSIKYLVQTGRDESKVKQIRKYLQA 358
Query: 241 NKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGF 300
MF DYS+P + ++ +EL+L+ VVPC SGPKRP D+V +++MK D+ +CL + GF
Sbjct: 359 VGMFRDYSDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGF 418
Query: 301 KGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACEL 360
KGF + ++ + F ++ + L HG VVIAAITS TNTSNPSVMLGA L+AKKA +
Sbjct: 419 KGFQVAPDHHNDHKTFIYNDSEFTLSHGSVVIAAITSSTNTSNPSVMLGAGLLAKKAVDA 478
Query: 361 GLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAA 420
GL VKP++KTSL+PGSGVVT YL+ SG+ YL+ LGF +VGYG TCIGNSG + + V
Sbjct: 479 GLNVKPYVKTSLSPGSGVVTYYLRESGVMPYLSQLGFDVVGYGSMTCIGNSGPLPEPVVE 538
Query: 421 AITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGK 480
AIT+ D+VA VLSGNRNFEGRVHP TRANYLASPPLV+AYA+AG++ IDFE EP+G
Sbjct: 539 AITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGTNA 598
Query: 481 DGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPK 540
G+++FLRDIWP+ EE+ V ++ V+P MF Y+ I N WN L+ PS LY W+PK
Sbjct: 599 KGQQVFLRDIWPTREEIQAVERQYVIPGMFTEVYQKIETVNASWNALAAPSDKLYLWNPK 658
Query: 541 STYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMER 600
STYI PP+F+++T+ P + AY LLN GDS+TTDHISPAG+I ++SPAA+YL R
Sbjct: 659 STYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNR 718
Query: 601 GVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMR 660
G+ R+FNSYGSRRGND IMARGTFANIRL+N+ LN + P+TIH+P+GE L VFDAA R
Sbjct: 719 GLTPREFNSYGSRRGNDAIMARGTFANIRLLNRFLNKQ-APQTIHLPSGETLDVFDAAER 777
Query: 661 YKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 720
Y+ EGH ++LAG EYGSGSSRDWAAKGP LLG+KAV+A+S+ERIHRSNLVGMG+IPL +
Sbjct: 778 YQQEGHPLIVLAGKEYGSGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEY 837
Query: 721 KPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFD 780
PGE+A++ GLTG ERYTI +P +++ P V+V D+GK+F VIRFDT+VEL YF
Sbjct: 838 LPGENADSLGLTGRERYTIIIPENLT---PRMHVQVKLDTGKTFQAVIRFDTDVELTYFH 894
Query: 781 HGGILQYVIRNL 792
+GGIL Y+IR +
Sbjct: 895 NGGILNYMIRKM 906
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 994 bits (2570), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/792 (59%), Positives = 600/792 (75%), Gaps = 4/792 (0%)
Query: 1 MRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKW 60
MRDA+ KLGGD KINP+ P DLVIDHS+QVD R +++Q N + EF RN+ERF FLKW
Sbjct: 99 MRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKW 158
Query: 61 GSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXX 120
GS AFHNM ++PPGSGI+HQVNLEYL RVVF+ +G YPDS+VGTDSHTTMID
Sbjct: 159 GSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGW 218
Query: 121 XXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVE 180
MLGQP+SMVLP V+G++L GK VT+TD+VLT+T+ LR+ GVVG FVE
Sbjct: 219 GVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVE 278
Query: 181 FYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRA 240
F+G G+++LS+ADRATIANM PEYGAT FFPVD V++ YL TGR ++ + I+ YL+A
Sbjct: 279 FFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQA 338
Query: 241 NKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGF 300
MF D+++P + ++ +EL+L+ VVPC SGPKRP D+V +++MK D+ +CL + GF
Sbjct: 339 VGMFRDFNDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGF 398
Query: 301 KGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACEL 360
KGF + E+ + F + T L HG VVIAAITSCTNTSNPSVMLGA L+AKKA +
Sbjct: 399 KGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDA 458
Query: 361 GLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAA 420
GL V P+IKTSL+PGSGVVT YLQ SG+ YL+ LGF +VGYGC TCIGNSG + + V
Sbjct: 459 GLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVE 518
Query: 421 AITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGK 480
AIT+ D+VA VLSGNRNFEGRVHP TRANYLASPPLV+AYA+AG++ IDFE EP+GV
Sbjct: 519 AITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGVNA 578
Query: 481 DGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPK 540
G+++FL+DIWP+ +E+ V ++ V+P MFK Y+ I N WN L+ PS L+ W+ K
Sbjct: 579 KGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSK 638
Query: 541 STYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMER 600
STYI PP+F+++T+ P + AY LLN GDS+TTDHISPAG+I ++SPAA+YL R
Sbjct: 639 STYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNR 698
Query: 601 GVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMR 660
G+ R+FNSYGSRRGND +MARGTFANIRL+N+ LN + P+TIH+P+GE L VFDAA R
Sbjct: 699 GLTPREFNSYGSRRGNDAVMARGTFANIRLLNRFLNKQ-APQTIHLPSGEILDVFDAAER 757
Query: 661 YKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 720
Y+ G ++LAG EYG+GSSRDWAAKGP LLG+KAV+A+S+ERIHRSNLVGMG+IPL +
Sbjct: 758 YQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEY 817
Query: 721 KPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFD 780
PGE+A+ GLTG ERYTI +P + ++P V+V D+GK+F V+RFDT+VEL YF
Sbjct: 818 LPGENADALGLTGQERYTIIIPEN---LKPQMKVQVKLDTGKTFQAVMRFDTDVELTYFL 874
Query: 781 HGGILQYVIRNL 792
+GGIL Y+IR +
Sbjct: 875 NGGILNYMIRKM 886
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
pdb|1AMJ|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
Length = 754
Score = 199 bits (505), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 216/762 (28%), Positives = 314/762 (41%), Gaps = 149/762 (19%)
Query: 19 VPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLVVPPG 74
VP + DH ++ Q E + RR N+E + FL + A + + PG
Sbjct: 93 VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGFWRPG 142
Query: 75 SGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQ 134
SGI+HQ+ LE + G+L ++GTDSHT M G
Sbjct: 143 SGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGI 193
Query: 135 PMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADR 194
P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 194 PWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGM 253
Query: 195 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSER 254
ATI NM E GAT FP +H +YL TGR+D E F D+ P S
Sbjct: 254 ATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--------FKDHLVPDSGC 305
Query: 255 VYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVA 314
Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 306 HYDQLIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE------ 344
Query: 315 EFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAP 374
G P +R + I SCTN+S + AA VAK+A GL+ K + ++ P
Sbjct: 345 -----GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITP 391
Query: 375 GSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIVAAAV 432
GS + ++ G + L +G ++ C CIG + DI I V
Sbjct: 392 GSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI---------V 442
Query: 433 LSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDI 490
S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK L
Sbjct: 443 TSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA- 499
Query: 491 WPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYF 550
P ++E+ D + TY+ K + SG P S + F
Sbjct: 500 -PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSPTSQRLQLLEPF 544
Query: 551 KDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSY 610
++ L+ TTDHIS AG K F +
Sbjct: 545 DKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FRGH 582
Query: 611 GSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFDAAMRYKNEGHD 667
N+ ++ N R N + N E GP V D A YK G
Sbjct: 583 LDNISNNLLIGAINSEN-RKANSVRNAVTQEFGP------------VPDTARYYKQHGIR 629
Query: 668 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAE 727
V++ YG GSSR+ +A P LG +A+I KSF RIH +NL G++PL F + A+
Sbjct: 630 WVVIGDENYGEGSSREHSALEPRFLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPAD 687
Query: 728 THGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIR 769
+ + ++ TI + + P GK TC+I+
Sbjct: 688 YNKIHPVDKLTI---QGLKDFAP----------GKPLTCIIK 716
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound
pdb|1FGH|A Chain A, Complex With 4-Hydroxy-Trans-Aconitate
pdb|8ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 198 bits (504), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 216/762 (28%), Positives = 314/762 (41%), Gaps = 149/762 (19%)
Query: 19 VPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLVVPPG 74
VP + DH ++ Q E + RR N+E + FL + A + + PG
Sbjct: 93 VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGFWRPG 142
Query: 75 SGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQ 134
SGI+HQ+ LE + G+L ++GTDSHT M G
Sbjct: 143 SGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGI 193
Query: 135 PMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADR 194
P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 194 PWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGM 253
Query: 195 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSER 254
ATI NM E GAT FP +H +YL TGR+D E F D+ P S
Sbjct: 254 ATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--------FKDHLVPDSGC 305
Query: 255 VYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVA 314
Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 306 HYDQLIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE------ 344
Query: 315 EFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAP 374
G P +R + I SCTN+S + AA VAK+A GL+ K + ++ P
Sbjct: 345 -----GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITP 391
Query: 375 GSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIVAAAV 432
GS + ++ G + L +G ++ C CIG + DI I V
Sbjct: 392 GSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI---------V 442
Query: 433 LSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDI 490
S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK L
Sbjct: 443 TSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA- 499
Query: 491 WPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYF 550
P ++E+ D + TY+ K + SG P S + F
Sbjct: 500 -PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSPTSQRLQLLEPF 544
Query: 551 KDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSY 610
++ L+ TTDHIS AG K F +
Sbjct: 545 DKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FRGH 582
Query: 611 GSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFDAAMRYKNEGHD 667
N+ ++ N R N + N E GP V D A YK G
Sbjct: 583 LDNISNNLLIGAINSEN-RKANSVRNAVTQEFGP------------VPDTARYYKQHGIR 629
Query: 668 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAE 727
V++ YG GSSR+ +A P LG +A+I KSF RIH +NL G++PL F + A+
Sbjct: 630 WVVIGDENYGEGSSREHSALEPRFLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPAD 687
Query: 728 THGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIR 769
+ + ++ TI + + P GK TC+I+
Sbjct: 688 YNKIHPVDKLTI---QGLKDFAP----------GKPLTCIIK 716
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase
Length = 753
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 217/781 (27%), Positives = 324/781 (41%), Gaps = 142/781 (18%)
Query: 19 VPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLVVPPG 74
VP + DH ++ Q E + RR N+E + FL + A + + PG
Sbjct: 92 VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGFWRPG 141
Query: 75 SGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQ 134
SGI+HQ+ LE + G+L ++GTDSHT M G
Sbjct: 142 SGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGI 192
Query: 135 PMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADR 194
P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 193 PWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGM 252
Query: 195 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSER 254
ATI NM E GAT FP +H +YL TGR+D E F D+ P
Sbjct: 253 ATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--------FKDHLVPDPGC 304
Query: 255 VYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVA 314
Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 305 HYDQVIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE------ 343
Query: 315 EFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAP 374
G P +R + I SCTN+S + AA VAK+A GL+ K + ++ P
Sbjct: 344 -----GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITP 390
Query: 375 GSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIVAAAV 432
GS + ++ G + L +G ++ C CIG + DI I V
Sbjct: 391 GSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI---------V 441
Query: 433 LSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDI 490
S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK L
Sbjct: 442 TSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA- 498
Query: 491 WPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYF 550
P ++E+ D + TY+ K + SG A P S + F
Sbjct: 499 -PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVAVSPTSQRLQLLEPF 543
Query: 551 KDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSY 610
++ L+ TTDHIS AG K F +
Sbjct: 544 DKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FRGH 581
Query: 611 GSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFDAAMRYKNEGHD 667
N+ ++ N R N + N E GP V D A YK G
Sbjct: 582 LDNISNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPDTARYYKQHGIR 628
Query: 668 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAE 727
V++ YG G+SR+ +A P LG +A+I KSF RIH +NL G++PL F + A+
Sbjct: 629 WVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPAD 686
Query: 728 THGLTGHERYTIDLPSSVSEIRPGQDVRVVTD--SGKSFTCVIRFD-TEVELAYFDHGGI 784
+ + ++ TI + + PG+ ++ + +G T ++ E ++ +F G
Sbjct: 687 YNKIHPVDKLTI---QGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRAGSA 743
Query: 785 L 785
L
Sbjct: 744 L 744
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
pdb|1NIT|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
Length = 754
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 216/762 (28%), Positives = 313/762 (41%), Gaps = 149/762 (19%)
Query: 19 VPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLVVPPG 74
VP + DH ++ Q E + RR N+E + FL + A + + PG
Sbjct: 93 VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGFWRPG 142
Query: 75 SGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQ 134
SGI+HQ+ LE + G+L ++GTDSHT M G
Sbjct: 143 SGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGI 193
Query: 135 PMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADR 194
P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 194 PWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGM 253
Query: 195 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSER 254
ATI NM E GAT FP +H +YL TGR+D E F D+ P S
Sbjct: 254 ATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--------FKDHLVPDSGC 305
Query: 255 VYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVA 314
Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 306 HYDQLIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE------ 344
Query: 315 EFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAP 374
G P +R + I SCTN+S + AA VAK+A GL+ K + ++ P
Sbjct: 345 -----GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITP 391
Query: 375 GSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIVAAAV 432
GS + ++ G + L +G ++ C CIG + DI I V
Sbjct: 392 GSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI---------V 442
Query: 433 LSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDI 490
S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK L
Sbjct: 443 TSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA- 499
Query: 491 WPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYF 550
P ++E+ D + TY+ K + SG P S + F
Sbjct: 500 -PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSPTSQRLQLLEPF 544
Query: 551 KDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSY 610
++ L+ TTDHIS AG K F +
Sbjct: 545 DKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FRGH 582
Query: 611 GSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFDAAMRYKNEGHD 667
N+ ++ N R N + N E GP V D A YK G
Sbjct: 583 LDNISNNLLIGAINSEN-RKANSVRNAVTQEFGP------------VPDTARYYKQHGIR 629
Query: 668 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAE 727
V++ YG GSSR+ A P LG +A+I KSF RIH +NL G++PL F + A+
Sbjct: 630 WVVIGDENYGEGSSREHRALEPRFLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPAD 687
Query: 728 THGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIR 769
+ + ++ TI + + P GK TC+I+
Sbjct: 688 YNKIHPVDKLTI---QGLKDFAP----------GKPLTCIIK 716
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|6ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|7ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 196 bits (498), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 217/781 (27%), Positives = 323/781 (41%), Gaps = 142/781 (18%)
Query: 19 VPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLVVPPG 74
VP + DH ++ Q E + RR N+E + FL + A + + PG
Sbjct: 93 VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGFWRPG 142
Query: 75 SGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQ 134
SGI+HQ+ LE + G+L ++GTDSHT M G
Sbjct: 143 SGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGI 193
Query: 135 PMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADR 194
P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 194 PWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGM 253
Query: 195 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSER 254
ATI NM E GAT FP +H +YL TGR+D E F D+ P
Sbjct: 254 ATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--------FKDHLVPDPGC 305
Query: 255 VYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVA 314
Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 306 HYDQVIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE------ 344
Query: 315 EFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAP 374
G P +R + I SCTN+S + AA VAK+A GL+ K + ++ P
Sbjct: 345 -----GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITP 391
Query: 375 GSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIVAAAV 432
GS + ++ G + L +G ++ C CIG + DI I V
Sbjct: 392 GSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI---------V 442
Query: 433 LSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDI 490
S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK L
Sbjct: 443 TSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA- 499
Query: 491 WPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYF 550
P ++E+ D + TY+ K + SG P S + F
Sbjct: 500 -PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSPTSQRLQLLEPF 544
Query: 551 KDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSY 610
++ L+ TTDHIS AG K F +
Sbjct: 545 DKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FRGH 582
Query: 611 GSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFDAAMRYKNEGHD 667
N+ ++ N R N + N E GP V D A YK G
Sbjct: 583 LDNISNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPDTARYYKQHGIR 629
Query: 668 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAE 727
V++ YG GSSR+ +A P LG +A+I KSF RIH +NL G++PL F + A+
Sbjct: 630 WVVIGDENYGEGSSREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPAD 687
Query: 728 THGLTGHERYTIDLPSSVSEIRPGQDVRVVTD--SGKSFTCVIRFD-TEVELAYFDHGGI 784
+ + ++ TI + + PG+ ++ + +G T ++ E ++ +F G
Sbjct: 688 YNKIHPVDKLTI---QGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRAGSA 744
Query: 785 L 785
L
Sbjct: 745 L 745
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate
Length = 754
Score = 195 bits (496), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 216/781 (27%), Positives = 323/781 (41%), Gaps = 142/781 (18%)
Query: 19 VPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLVVPPG 74
VP + DH ++ Q E + RR N+E + FL + A + + PG
Sbjct: 93 VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGFWRPG 142
Query: 75 SGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQ 134
SGI+HQ+ LE + G+L ++GTDSHT M G
Sbjct: 143 SGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGI 193
Query: 135 PMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADR 194
P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 194 PWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGM 253
Query: 195 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSER 254
ATI NM E GAT FP +H +YL TGR+D E F D+ P
Sbjct: 254 ATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--------FKDHLVPDPGC 305
Query: 255 VYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVA 314
Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 306 HYDQVIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE------ 344
Query: 315 EFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAP 374
G P +R + I SCTN+S + AA VAK+A GL+ K + ++ P
Sbjct: 345 -----GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITP 391
Query: 375 GSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIVAAAV 432
GS + ++ G + L +G ++ C CIG + DI I V
Sbjct: 392 GSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI---------V 442
Query: 433 LSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDI 490
S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK L
Sbjct: 443 TSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA- 499
Query: 491 WPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYF 550
P ++E+ D + TY+ K + SG P S + F
Sbjct: 500 -PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSPTSQRLQLLEPF 544
Query: 551 KDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSY 610
++ L+ TTDHIS AG K F +
Sbjct: 545 DKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FRGH 582
Query: 611 GSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFDAAMRYKNEGHD 667
N+ ++ N R N + N E GP V D A YK G
Sbjct: 583 LDNISNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPDTARYYKQHGIR 629
Query: 668 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAE 727
V++ YG G+SR+ +A P LG +A+I KSF RIH +NL G++PL F + A+
Sbjct: 630 WVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPAD 687
Query: 728 THGLTGHERYTIDLPSSVSEIRPGQDVRVVTD--SGKSFTCVIRFD-TEVELAYFDHGGI 784
+ + ++ TI + + PG+ ++ + +G T ++ E ++ +F G
Sbjct: 688 YNKIHPVDKLTI---QGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRAGSA 744
Query: 785 L 785
L
Sbjct: 745 L 745
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase
pdb|1B0K|A Chain A, S642a:fluorocitrate Complex Of Aconitase
Length = 753
Score = 195 bits (495), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 216/781 (27%), Positives = 323/781 (41%), Gaps = 142/781 (18%)
Query: 19 VPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLVVPPG 74
VP + DH ++ Q E + RR N+E + FL + A + + PG
Sbjct: 92 VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGFWRPG 141
Query: 75 SGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQ 134
SGI+HQ+ LE + G+L ++GTDSHT M G
Sbjct: 142 SGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGI 192
Query: 135 PMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADR 194
P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 193 PWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGM 252
Query: 195 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSER 254
ATI NM E GAT FP +H +YL TGR+D E F D+ P
Sbjct: 253 ATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--------FKDHLVPDPGC 304
Query: 255 VYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVA 314
Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 305 HYDQVIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE------ 343
Query: 315 EFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAP 374
G P +R + I SCTN+S + AA VAK+A GL+ K + ++ P
Sbjct: 344 -----GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITP 390
Query: 375 GSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIVAAAV 432
GS + ++ G + L +G ++ C CIG + DI I V
Sbjct: 391 GSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI---------V 441
Query: 433 LSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDI 490
S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK L
Sbjct: 442 TSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA- 498
Query: 491 WPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYF 550
P ++E+ D + TY+ K + SG P S + F
Sbjct: 499 -PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSPTSQRLQLLEPF 543
Query: 551 KDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSY 610
++ L+ TTDHIS AG K F +
Sbjct: 544 DKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FRGH 581
Query: 611 GSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFDAAMRYKNEGHD 667
N+ ++ N R N + N E GP V D A YK G
Sbjct: 582 LDNISNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPDTARYYKQHGIR 628
Query: 668 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAE 727
V++ YG G+SR+ +A P LG +A+I KSF RIH +NL G++PL F + A+
Sbjct: 629 WVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPAD 686
Query: 728 THGLTGHERYTIDLPSSVSEIRPGQDVRVVTD--SGKSFTCVIRFD-TEVELAYFDHGGI 784
+ + ++ TI + + PG+ ++ + +G T ++ E ++ +F G
Sbjct: 687 YNKIHPVDKLTI---QGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRAGSA 743
Query: 785 L 785
L
Sbjct: 744 L 744
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex
Length = 753
Score = 194 bits (493), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 216/781 (27%), Positives = 323/781 (41%), Gaps = 142/781 (18%)
Query: 19 VPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLVVPPG 74
VP + DH ++ Q E + RR N+E + FL + A + + PG
Sbjct: 92 VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGFWRPG 141
Query: 75 SGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQ 134
SGI+HQ+ LE + G+L ++GTDSHT M G
Sbjct: 142 SGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGI 192
Query: 135 PMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADR 194
P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 193 PWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGM 252
Query: 195 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSER 254
ATI NM E GAT FP +H +YL TGR+D E F D+ P
Sbjct: 253 ATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--------FKDHLVPDPGC 304
Query: 255 VYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVA 314
Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 305 HYDQVIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE------ 343
Query: 315 EFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAP 374
G P +R + I SCTN+S + AA VAK+A GL+ K + ++ P
Sbjct: 344 -----GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITP 390
Query: 375 GSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIVAAAV 432
GS + ++ G + L +G ++ C CIG + DI I V
Sbjct: 391 GSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI---------V 441
Query: 433 LSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDI 490
S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK L
Sbjct: 442 TSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA- 498
Query: 491 WPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYF 550
P ++E+ D + TY+ K + SG P S + F
Sbjct: 499 -PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSPTSQRLQLLEPF 543
Query: 551 KDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSY 610
++ L+ TTDHIS AG K F +
Sbjct: 544 DKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FRGH 581
Query: 611 GSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFDAAMRYKNEGHD 667
N+ ++ N R N + N E GP V D A YK G
Sbjct: 582 LDNISNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPDTARYYKQHGIR 628
Query: 668 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAE 727
V++ YG GSS++ +A P LG +A+I KSF RIH +NL G++PL F + A+
Sbjct: 629 WVVIGDENYGEGSSQEHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPAD 686
Query: 728 THGLTGHERYTIDLPSSVSEIRPGQDVRVVTD--SGKSFTCVIRFD-TEVELAYFDHGGI 784
+ + ++ TI + + PG+ ++ + +G T ++ E ++ +F G
Sbjct: 687 YNKIHPVDKLTI---QGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRAGSA 743
Query: 785 L 785
L
Sbjct: 744 L 744
>pdb|2PKP|A Chain A, Crystal Structure Of 3-Isopropylmalate Dehydratase (Leud)
From Methhanocaldococcus Jannaschii Dsm2661 (Mj1271)
Length = 170
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 44/130 (33%), Positives = 63/130 (48%), Gaps = 18/130 (13%)
Query: 669 VILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 728
VI+AG +G GSSR+ A G+KAVIAKSF RI N + +G+IP+ A T
Sbjct: 54 VIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPII------ANT 107
Query: 729 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYV 788
+ + IDL EI V+T+ K+ C E E+ GG++ Y+
Sbjct: 108 DEIKDGDIVEIDLDK--EEI-------VITNKNKTIKCETPKGLEREI--LAAGGLVNYL 156
Query: 789 -IRNLINVRQ 797
R LI ++
Sbjct: 157 KKRKLIQSKK 166
>pdb|1V7L|A Chain A, Structure Of 3-Isopropylmalate Isomerase Small Subunit
From Pyrococcus Horikoshii
pdb|1V7L|B Chain B, Structure Of 3-Isopropylmalate Isomerase Small Subunit
From Pyrococcus Horikoshii
Length = 163
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 19/122 (15%)
Query: 669 VILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 728
V++AG +G GSSR+ AA LG+ VIA+SF RI N + +G IPL +T
Sbjct: 54 VVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIG-IPLLL-----GKT 107
Query: 729 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYV 788
GL + T++ + E+R G ++ + ++R GGIL+Y+
Sbjct: 108 EGLKDGDLVTVNWET--GEVRKGDEILMFEPLEDFLLEIVR-----------EGGILEYI 154
Query: 789 IR 790
R
Sbjct: 155 RR 156
>pdb|2HCU|A Chain A, Crystal Structure Of Smu.1381 (Or Leud) From Streptococcus
Mutans
Length = 213
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 668 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGE 724
++++ G +G+GSSR+ AA G K ++A SF IH +N + GI+P+ +P E
Sbjct: 87 SILITGDNFGAGSSREHAAWALADYGFKVIVAGSFGDIHYNNDLNNGILPI-IQPKE 142
>pdb|3Q3W|A Chain A, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni.
pdb|3Q3W|B Chain B, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni
Length = 203
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 662 KNEGHDTVILAGAE-YGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPL 718
K E ++ IL E +GSGSSR+ A + G++A+IA SF I ++N +G G++ +
Sbjct: 67 KKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNGLLTI 124
>pdb|3VBA|A Chain A, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|B Chain B, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|C Chain C, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|D Chain D, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|E Chain E, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|F Chain F, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
Length = 176
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 669 VILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGI 715
+I+ G +G GSSR+ A G G+ VIA+SF RI N + +G+
Sbjct: 56 IIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGL 102
>pdb|3H5H|A Chain A, Leud_1-186 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
pdb|3H5H|B Chain B, Leud_1-186 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
Length = 189
Score = 36.2 bits (82), Expect = 0.069, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 668 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 716
+V++AG ++G+GSSR+ A M G + VI+ F I R N G++
Sbjct: 66 SVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLL 114
>pdb|3H5J|A Chain A, Leud_1-168 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
pdb|3H5J|B Chain B, Leud_1-168 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
Length = 171
Score = 36.2 bits (82), Expect = 0.076, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 668 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 716
+V++AG ++G+GSSR+ A M G + VI+ F I R N G++
Sbjct: 66 SVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLL 114
>pdb|3H5E|A Chain A, Leud_1-156 Small Subunit Of Isopropylmalate Isomerase
(rv2987c) From Mycobacterium Tuberculosis
pdb|3H5E|B Chain B, Leud_1-156 Small Subunit Of Isopropylmalate Isomerase
(rv2987c) From Mycobacterium Tuberculosis
Length = 159
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 668 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 716
+V++AG ++G+GSSR+ A M G + VI+ F I R N G++
Sbjct: 66 SVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLL 114
>pdb|1L5J|A Chain A, Crystal Structure Of E. Coli Aconitase B.
pdb|1L5J|B Chain B, Crystal Structure Of E. Coli Aconitase B
Length = 865
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 81/401 (20%), Positives = 136/401 (33%), Gaps = 107/401 (26%)
Query: 73 PGSGIVHQVNLEYLGRVVFNTNGMLYPDSV-VGTDSHTTMIDXXXXXXXXXXXXXXXXXM 131
PG G++H +L R ML PD+V G DSHT
Sbjct: 474 PGDGVIHS----WLNR-------MLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATG 522
Query: 132 LGQPMSMVLPGVVGFKLSGKLRDGVTATDLV------------LTVTQMLRKHGVVGMFV 179
+ M + +P V + GK++ G+T DLV LTV + +K+ G +
Sbjct: 523 V---MPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRIL 579
Query: 180 EFYGEGMSELSLADRATIANMSPEYGAT-----------MGFFPVDHVTLQYLKLTGRSD 228
E EG+ +L + + + S E A + + + V L+++ G D
Sbjct: 580 EI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGD 637
Query: 229 -----DTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVV-PCVSGPKRPHDRVP 282
+ +E +L ++ ++ + V ++++L ++ P + P P D P
Sbjct: 638 RRTLERRIQGMEKWLANPELLEADADAEYAAV----IDIDLADIKEPILCAPNDPDDARP 693
Query: 283 LNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTS 342
L+ ++ + K+ E I SC
Sbjct: 694 LSAVQGE----------------------KIDE-----------------VFIGSCMTNI 714
Query: 343 NPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGY 402
G L A K L + W+ AP + + L G G I
Sbjct: 715 GHFRAAGKLLDAHKG---QLPTRLWV----APPTRMDAAQLTEEGYYSVFGKSGARIEIP 767
Query: 403 GCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRV 443
GC+ C+GN + D A V + RNF R+
Sbjct: 768 GCSLCMGNQARVADG-----------ATVVSTSTRNFPNRL 797
>pdb|3Q8D|A Chain A, E. Coli Reco Complex With Ssb C-terminus
pdb|3Q8D|B Chain B, E. Coli Reco Complex With Ssb C-terminus
Length = 242
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 392 LNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGR 442
L HLG+ G T C G+ +DD + E A+V+ N+ F GR
Sbjct: 139 LGHLGY---GVNFTHCAGSGEPVDDTMTYRYREEKGFIASVVIDNKTFTGR 186
>pdb|2HIH|A Chain A, Crystal Structure Of Staphylococcus Hyicus Lipase
pdb|2HIH|B Chain B, Crystal Structure Of Staphylococcus Hyicus Lipase
Length = 431
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 733 GHERYTIDLPSSVSEIRPGQDVRVVTDS--GKSFTCV---IRFDTEVELAY-FDHGGILQ 786
GHERY + + +PG V + S G++ + +RF + E+AY HGGI+
Sbjct: 132 GHERYGKTYEGVLKDWKPGHPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIIS 191
Query: 787 YVIR 790
+ +
Sbjct: 192 ELFK 195
>pdb|4I1D|A Chain A, The Crystal Structure Of An Abc Transporter
Substrate-Binding Protein From Bradyrhizobium Japonicum
Usda 110
pdb|4I1D|B Chain B, The Crystal Structure Of An Abc Transporter
Substrate-Binding Protein From Bradyrhizobium Japonicum
Usda 110
pdb|4I1D|C Chain C, The Crystal Structure Of An Abc Transporter
Substrate-Binding Protein From Bradyrhizobium Japonicum
Usda 110
pdb|4I1D|D Chain D, The Crystal Structure Of An Abc Transporter
Substrate-Binding Protein From Bradyrhizobium Japonicum
Usda 110
Length = 324
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 492 PSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSG 532
PS++++ + + +PD + A + G P+W+ + P+G
Sbjct: 25 PSAKKLGITINQDSIPDAWPAIKTQVGSGKPIWDVVDTPTG 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,714,460
Number of Sequences: 62578
Number of extensions: 1083728
Number of successful extensions: 2265
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2181
Number of HSP's gapped (non-prelim): 50
length of query: 797
length of database: 14,973,337
effective HSP length: 107
effective length of query: 690
effective length of database: 8,277,491
effective search space: 5711468790
effective search space used: 5711468790
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)