Query 003763
Match_columns 797
No_of_seqs 330 out of 2627
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 11:36:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003763.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003763hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00070 aconitate hydratase 100.0 7E-234 2E-238 2021.0 70.0 794 1-794 142-935 (936)
2 PTZ00092 aconitate hydratase-l 100.0 1E-231 3E-236 1999.9 68.6 788 1-794 110-897 (898)
3 KOG0452 RNA-binding translatio 100.0 5E-233 1E-237 1876.8 44.5 790 1-793 103-892 (892)
4 TIGR01341 aconitase_1 aconitat 100.0 2E-229 4E-234 1978.1 68.0 782 1-793 86-876 (876)
5 PRK12881 acnA aconitate hydrat 100.0 3E-228 6E-233 1974.5 68.7 776 1-794 103-889 (889)
6 PRK09277 aconitate hydratase; 100.0 8E-228 2E-232 1966.4 69.8 777 1-794 104-887 (888)
7 TIGR02333 2met_isocit_dHY 2-me 100.0 2E-224 5E-229 1928.6 68.3 757 1-794 93-858 (858)
8 COG1048 AcnA Aconitase A [Ener 100.0 7E-222 2E-226 1884.1 62.0 763 1-794 95-861 (861)
9 TIGR01340 aconitase_mito aconi 100.0 8E-167 2E-171 1450.9 56.2 656 5-788 73-745 (745)
10 PRK07229 aconitate hydratase; 100.0 2E-155 5E-160 1348.6 52.2 600 3-793 44-645 (646)
11 TIGR01342 acon_putative aconit 100.0 3E-154 6E-159 1336.7 51.4 606 4-794 42-654 (658)
12 TIGR00139 h_aconitase homoacon 100.0 6E-142 1E-146 1231.0 50.0 623 5-792 48-712 (712)
13 PRK11413 putative hydratase; P 100.0 1E-138 3E-143 1208.6 49.5 641 4-790 74-750 (751)
14 KOG0453 Aconitase/homoaconitas 100.0 2E-134 3E-139 1113.5 43.5 663 5-790 104-774 (778)
15 cd01586 AcnA_IRP Aconitase A c 100.0 3E-123 6E-128 1014.5 35.6 382 1-467 19-404 (404)
16 TIGR00170 leuC 3-isopropylmala 100.0 7E-115 2E-119 973.1 38.0 413 4-468 43-460 (465)
17 PRK12466 isopropylmalate isome 100.0 6E-114 1E-118 967.2 37.1 413 4-468 44-462 (471)
18 PRK05478 isopropylmalate isome 100.0 8E-114 2E-118 966.1 37.7 414 3-468 42-460 (466)
19 cd01584 AcnA_Mitochondrial Aco 100.0 7E-114 1E-118 950.7 36.5 395 4-467 15-412 (412)
20 cd01583 IPMI 3-isopropylmalate 100.0 1E-112 3E-117 934.4 37.2 367 3-467 14-382 (382)
21 PF00330 Aconitase: Aconitase 100.0 2E-113 4E-118 966.2 29.4 418 4-465 43-465 (465)
22 cd01585 AcnA_Bact Aconitase ca 100.0 2E-111 4E-116 922.7 35.7 365 3-467 15-380 (380)
23 TIGR01343 hacA_fam homoaconita 100.0 3E-110 7E-115 921.4 35.6 368 3-468 40-409 (412)
24 COG0065 LeuC 3-isopropylmalate 100.0 8E-110 2E-114 891.7 33.4 372 3-468 44-417 (423)
25 TIGR02086 IPMI_arch 3-isopropy 100.0 2E-109 4E-114 915.5 35.5 367 3-468 41-408 (412)
26 PRK00402 3-isopropylmalate deh 100.0 3E-109 7E-114 914.8 35.8 368 3-468 43-412 (418)
27 TIGR02083 LEU2 3-isopropylmala 100.0 8E-109 2E-113 909.7 36.8 370 3-468 42-414 (419)
28 cd01582 Homoaconitase Homoacon 100.0 2E-103 3E-108 854.2 33.4 347 5-467 15-363 (363)
29 cd01581 AcnB Aconitate hydrata 100.0 7E-101 2E-105 850.0 33.2 367 3-467 40-436 (436)
30 cd01351 Aconitase Aconitase ca 100.0 1.3E-97 3E-102 822.8 35.1 375 3-467 14-389 (389)
31 PRK09238 bifunctional aconitat 100.0 4.8E-93 1E-97 827.2 35.3 370 2-468 411-810 (835)
32 TIGR00117 acnB aconitate hydra 100.0 5.3E-92 1.1E-96 815.9 37.2 368 2-467 412-809 (844)
33 PLN00094 aconitate hydratase 2 100.0 6.3E-90 1.4E-94 796.0 35.5 370 2-468 485-884 (938)
34 cd01580 AcnA_IRP_Swivel Aconit 100.0 9.6E-64 2.1E-68 484.9 12.7 170 571-740 1-170 (171)
35 COG1049 AcnB Aconitase B [Ener 100.0 6.6E-46 1.4E-50 410.2 21.0 330 71-502 463-822 (852)
36 KOG0454 3-isopropylmalate dehy 100.0 7.7E-46 1.7E-50 398.6 17.8 440 236-791 13-461 (502)
37 cd01578 AcnA_Mitochon_Swivel M 100.0 6.7E-40 1.5E-44 314.6 9.8 141 571-740 1-141 (149)
38 COG0066 LeuD 3-isopropylmalate 100.0 2E-38 4.3E-43 313.7 10.4 166 568-793 10-180 (191)
39 PRK00439 leuD 3-isopropylmalat 100.0 8.7E-38 1.9E-42 308.6 12.1 157 569-793 4-160 (163)
40 PRK14023 homoaconitate hydrata 100.0 1.5E-37 3.2E-42 307.2 12.1 157 569-794 4-160 (166)
41 TIGR02087 LEUD_arch 3-isopropy 100.0 1.2E-37 2.6E-42 304.5 10.8 152 569-791 3-154 (154)
42 TIGR02084 leud 3-isopropylmala 100.0 1.4E-37 3.1E-42 304.3 11.0 154 569-790 3-156 (156)
43 PLN00072 3-isopropylmalate iso 100.0 1.1E-35 2.3E-40 307.0 12.3 173 562-792 68-241 (246)
44 TIGR00171 leuD 3-isopropylmala 100.0 3.3E-34 7.1E-39 287.9 9.0 163 567-782 10-174 (188)
45 PRK01641 leuD isopropylmalate 100.0 1.2E-33 2.5E-38 286.7 8.5 160 567-782 10-172 (200)
46 cd01579 AcnA_Bact_Swivel Bacte 100.0 8.2E-34 1.8E-38 267.2 6.5 121 571-741 1-121 (121)
47 PF00694 Aconitase_C: Aconitas 100.0 5.9E-34 1.3E-38 270.8 2.7 128 595-722 3-130 (131)
48 cd01577 IPMI_Swivel Aconatase- 100.0 1.9E-30 4.1E-35 232.0 6.1 73 668-741 19-91 (91)
49 cd00404 Aconitase_swivel Aconi 100.0 1.1E-29 2.3E-34 225.7 6.7 71 668-740 17-87 (88)
50 cd01674 Homoaconitase_Swivel H 99.9 1E-28 2.3E-33 231.4 4.0 100 572-722 2-101 (129)
51 PRK09238 bifunctional aconitat 99.9 1.7E-27 3.8E-32 279.2 12.4 167 561-794 164-343 (835)
52 cd01576 AcnB_Swivel Aconitase 99.9 1.5E-25 3.2E-30 212.7 5.2 67 668-740 52-130 (131)
53 TIGR00117 acnB aconitate hydra 99.9 1.6E-24 3.4E-29 253.8 11.3 165 561-793 165-343 (844)
54 KOG0454 3-isopropylmalate dehy 99.9 8.1E-25 1.8E-29 236.8 6.0 377 6-466 112-498 (502)
55 PRK14812 hypothetical protein; 99.8 1.2E-20 2.6E-25 177.0 7.9 91 678-782 2-92 (119)
56 PLN00094 aconitate hydratase 2 99.8 5.6E-20 1.2E-24 215.4 12.8 119 656-793 283-415 (938)
57 PF06434 Aconitase_2_N: Aconit 98.5 4.1E-07 9E-12 91.5 7.9 120 656-794 44-176 (204)
58 COG1049 AcnB Aconitase B [Ener 96.1 0.0068 1.5E-07 70.3 5.0 118 657-792 213-343 (852)
59 PF04412 DUF521: Protein of un 95.9 0.02 4.3E-07 65.1 8.1 68 329-404 289-356 (400)
60 COG1679 Predicted aconitase [G 94.2 0.12 2.6E-06 57.7 7.3 69 328-404 288-356 (403)
61 cd01355 AcnX Putative Aconitas 91.8 0.38 8.3E-06 54.7 7.1 69 330-409 279-347 (389)
62 PF00694 Aconitase_C: Aconitas 40.8 14 0.00031 36.1 1.3 30 567-608 10-39 (131)
63 COG1833 Uri superfamily endonu 31.6 91 0.002 30.6 5.1 27 384-410 78-104 (132)
64 TIGR00829 FRU PTS system, fruc 25.3 61 0.0013 29.2 2.6 31 334-365 2-32 (85)
65 COG0311 PDX2 Predicted glutami 24.6 76 0.0016 33.0 3.4 75 367-444 38-114 (194)
66 COG1445 FrwB Phosphotransferas 23.6 95 0.0021 30.1 3.7 33 332-365 4-36 (122)
No 1
>PLN00070 aconitate hydratase
Probab=100.00 E-value=7.2e-234 Score=2020.96 Aligned_cols=794 Identities=91% Similarity=1.431 Sum_probs=765.2
Q ss_pred ChHHHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceecc
Q 003763 1 MRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQ 80 (797)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (797)
|||+++++|+||+++||.+||+|||||+|++|.+++.+|+..|+.+||+||.|||+|+||++++|+||+|+|||+|||||
T Consensus 142 mr~a~~~~g~dp~~inp~vPvdlviDHsvqvd~~g~~~a~~~n~~~e~~rN~Ery~flkw~~~af~~~~vvpPG~GI~HQ 221 (936)
T PLN00070 142 MRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSTAFQNMLVVPPGSGIVHQ 221 (936)
T ss_pred HHHHHHHcCCCccccCCCCCcceEecCceeecccCCcCHHHHHHHHHHHHhHHHhChhhhhhhhhcCccccCCCCceEee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeecCCCcccCCeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhh
Q 003763 81 VNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATD 160 (797)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakD 160 (797)
|++||||++|+.++|+++|+++|||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|++||||||
T Consensus 222 V~lE~la~~v~~~~G~~~PdtlVGtDSHT~~~GglG~lg~GVGg~EaeaaMlgqp~~~~vPevvgV~LtG~L~~GVtAKD 301 (936)
T PLN00070 222 VNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATD 301 (936)
T ss_pred echhhhcccccccCCcccCCeEEeCCcccCCCCcccccEecccHHHHHHHHhCCeEEeeCCCEEEEEEEeecCCCCCHhH
Confidence 99999999999778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHH
Q 003763 161 LVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRA 240 (797)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~~ 240 (797)
|||+|+++||++|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.|||++++++++++|+|+
T Consensus 302 liL~i~~~Lr~~GvvGk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~FP~De~T~~YL~~tgR~~~~~~~v~~y~k~ 381 (936)
T PLN00070 302 LVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIEAYLRA 381 (936)
T ss_pred HHHHHHHHhCcCccceEEEEEeCCccccCCHhHHhhHhhcchhhCceeeEecCChHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccCC
Q 003763 241 NKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHG 320 (797)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (797)
++||+++..+|++|.|+++++||||+|+|+||||++|||++||++++++|.+++..+++.+|+..+.++.....+++|+|
T Consensus 382 ~~l~~~~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 461 (936)
T PLN00070 382 NKMFVDYNEPQQERVYSSYLELDLEDVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKEAQSKVAKFSFHG 461 (936)
T ss_pred ccccccccCCCCCCceeEEEEEEcccceEecCCCcChhcCcCHHHhhhhHHHhhcccccccccccchhhhhhhhhhhccC
Confidence 99999766689999999999999999999999999999999999999999888876555444433323333335567899
Q ss_pred CcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEe
Q 003763 321 TPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIV 400 (797)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~ 400 (797)
+++.+++|+|++|||||||||||||+|+||++|+|||+++|+||+||||++|+|||++|++||+++||+++|+++||.|+
T Consensus 462 ~~~~l~~g~V~ia~IgSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk~~vaPGS~~V~~~l~~~Gl~~~L~~aGf~v~ 541 (936)
T PLN00070 462 QPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSGVVTKYLLKSGLQKYLNQQGFHIV 541 (936)
T ss_pred CCCCcccCCEeEEEEECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhcccccccCCCCccccCC
Q 003763 401 GYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGK 480 (797)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i~~d~~~~plg~~~ 480 (797)
+||||+||||+++++++++++|.+|+++++||||+||||+|||||..+++|||||++||||||+|+|++|+++||+|+++
T Consensus 542 ~~GCg~CIG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~gp~~~~~yLaSP~lVaA~AlaG~i~~d~~~dplg~~~ 621 (936)
T PLN00070 542 GYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGK 621 (936)
T ss_pred CCccccccCCCCCCCchhhhccccCCeeEEEEeccCCCCCCCCCCCCCceEEcCHHHHHHHHHcCCcccCCCCCCCccCC
Confidence 99999999999999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCccccCCCCCccCCCCCCCC
Q 003763 481 DGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGP 560 (797)
Q Consensus 481 ~G~~v~l~diwP~~~ei~~~~~~~~~p~~~~~~y~~~~~~~~~~~~l~~~~~~~~~w~~~st~i~~pp~f~~~~~~~~~~ 560 (797)
+|++|||+||||+.+||++++.+.++|++|.+.|.+++.+++.|++|+.|.+.+|+||++||||++||||++++..++++
T Consensus 622 ~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~p~~~~~~wd~~Styi~~pp~f~~~~~~~~~~ 701 (936)
T PLN00070 622 DGKDVFFRDIWPSNEEVAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPSGTLYSWDPKSTYIHEPPYFKNMTMSPPGP 701 (936)
T ss_pred CCCEecccCCCCChHHHHHHHHccCCHHHhhhhhhhccCCccccccCCCCCCCcccCCCCcceeecCCCCCCcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred CCcccceEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCC
Q 003763 561 HGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVG 640 (797)
Q Consensus 561 ~~i~~~~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~ 640 (797)
.+|+++|+|+++||+||||||||||+|+++||||+||+++|+.++|||+||+||||||||+||||+|+|++|+|++|++|
T Consensus 702 ~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFaNir~~N~~~~g~~g 781 (936)
T PLN00070 702 HGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGNDEIMARGTFANIRIVNKLLKGEVG 781 (936)
T ss_pred cCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHhcCCChhhccccccccCcchhhhceeccchhhhhhhcCCCcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceec
Q 003763 641 PKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 720 (797)
Q Consensus 641 ~~~~~~~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~ 720 (797)
++|.|+|+|+.|+|||+|++|+++|+++|||||+|||||||||||||++++|||+||||+||+||||+||+|||||||+|
T Consensus 782 ~~t~~~p~g~~~~i~daA~~Y~~~g~p~iIvaG~nyG~GSSRe~AA~~~~~lGvkaVIA~SF~rIhrsNli~~GiLPL~f 861 (936)
T PLN00070 782 PKTVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 861 (936)
T ss_pred CeeEecCCCceeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEccHHHHHHhhhhhcCcceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhcccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCeEEEEEecCCCHHHHHHHHhcCHHHHHHHHHhh
Q 003763 721 KPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 794 (797)
Q Consensus 721 ~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~i~~aGGll~~v~~~~~~ 794 (797)
.++++++++++.+++.++|++++.+.+++||++++++..+|++|++.++++++.|++|+++||+|||+++++++
T Consensus 862 ~~~~~~~~l~~~g~~~~~i~l~~~~~~l~p~~~~~v~~~~g~~~~~~~r~dt~~E~~~~~~GGiL~~v~r~~~~ 935 (936)
T PLN00070 862 KSGEDADTLGLTGHERYTIDLPSNISEIKPGQDVTVTTDNGKSFTCTLRFDTEVELAYFDHGGILPYVIRNLIK 935 (936)
T ss_pred CCcccHHHHhcCCCceEEEeccccccccCCCCEEEEEeCCCeEEEEEEeCCCHHHHHHHHcCCHHHHHHHHHhh
Confidence 99999999998888999999877666789999888876788999999999999999999999999999999875
No 2
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=1.3e-231 Score=1999.91 Aligned_cols=788 Identities=71% Similarity=1.170 Sum_probs=756.1
Q ss_pred ChHHHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceecc
Q 003763 1 MRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQ 80 (797)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (797)
|||+++++|+||.++||.+||+|+|||+||++..++.++...|+.++|+||.|||+||+|++++|+|++|+|||+|||||
T Consensus 110 mR~~~~~~g~d~~~inp~vpvdlviDHsvq~d~~~~~da~~~n~~~e~~rN~ery~fl~~~~~~f~~~~v~pPg~GI~HQ 189 (898)
T PTZ00092 110 MRDAMKRLGGDPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFERNLERFEFLKWGSKAFKNLLIVPPGSGIVHQ 189 (898)
T ss_pred HHHHHHHcCCChhhcCCCCCcceecCCCCCCCCCCCcCHHHHHHHHHHHhhHHHhChHHhhhhhhcCCcccCCCCceece
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeecCCCcccCCeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhh
Q 003763 81 VNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATD 160 (797)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakD 160 (797)
|++||||++|++++|+++|+++|||||||||+||||+|||||||+|++++|+||++||++||||+|+|+|+|++||||||
T Consensus 190 V~lE~la~vv~~e~G~~~Pd~lvGtDSHT~~~GalG~la~GVGg~Eaeaamlgq~~~~~vPevvgV~LtG~L~~gVtakD 269 (898)
T PTZ00092 190 VNLEYLARVVFNKDGLLYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMVLPEVVGFKLTGKLSEHVTATD 269 (898)
T ss_pred echhhhccccccccCcccCCeEEecCCCCCCCCcccccEecccHHHHHHHHhcCcEEeeCCCEEEEEEEeecCCCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHH
Q 003763 161 LVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRA 240 (797)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~~ 240 (797)
|||+|+++||++|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.+||++++++++++|.|+
T Consensus 270 liL~i~~~L~~~G~vgk~vEF~G~gv~~LSv~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~lve~y~ka 349 (898)
T PTZ00092 270 LVLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGATMGFFPIDEKTLDYLKQTGRSEEKVELIEKYLKA 349 (898)
T ss_pred HHHHHHHHhcccCccceEEEEEccccccCcHHHhhhhhccccccCceEEEecCChhHHHHHHhcccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred hhhhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccCC
Q 003763 241 NKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHG 320 (797)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (797)
|++|++ +|++|.|+++|+||||+|+|+||+|++|||++||+++.++|.+++....+.+++.+.+++....+++.++|
T Consensus 350 ~~l~~~---~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 426 (898)
T PTZ00092 350 NGLFRT---YAEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKDFTACLSAPVGFKGFGIPEEKHEKKVKFTYKG 426 (898)
T ss_pred HHHhhc---CCCCCceeEEEEEEcccceEeccCCCChhhccCccccCCCHHHhhhhhhhhhccCCCccccccccccccCC
Confidence 999963 68899999999999999999999999999999999999998887655444444444333222223444678
Q ss_pred CcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEe
Q 003763 321 TPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIV 400 (797)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~ 400 (797)
.++.+.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+++||.|+
T Consensus 427 ~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLakkAv~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l~~aGf~i~ 506 (898)
T PTZ00092 427 KEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIKTSLSPGSKVVTKYLEASGLLKYLEKLGFYTA 506 (898)
T ss_pred cccccCCCceeEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEe
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhcccccccCCCCccccCC
Q 003763 401 GYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGK 480 (797)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i~~d~~~~plg~~~ 480 (797)
+||||+|+||+++++++++++|.+|++++++|||+||||+||||+..+++|||||+|||||||+|+|++|+++||+|+++
T Consensus 507 ~~GCg~CiG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~~~dplg~~~ 586 (898)
T PTZ00092 507 GYGCMTCIGNSGDLDPEVSEAITNNDLVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGRVNIDFETEPLGSDK 586 (898)
T ss_pred CCccccccCcCCCCCchhhhhhccCCeeeeeecccCCCCCCCCCCCCCceEEcCHHHHHHHHHcCceecccccCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCccccCCCCCccCCCCCCCC
Q 003763 481 DGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGP 560 (797)
Q Consensus 481 ~G~~v~l~diwP~~~ei~~~~~~~~~p~~~~~~y~~~~~~~~~~~~l~~~~~~~~~w~~~st~i~~pp~f~~~~~~~~~~ 560 (797)
+|++|||+||||+.+||++++..+++|++|.+.|..++.+++.|++|+++.+++|+||++||||++||||++++..+++.
T Consensus 587 ~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~~~~~~~~~~ 666 (898)
T PTZ00092 587 TGKPVFLRDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQVPKGKLYEWDEKSTYIHNPPFFQTMELEPPPI 666 (898)
T ss_pred CCCEeeeeCCCCChHHHHHHHHccCCHHHhhHhhhcccCCchhhhhccCCCCCccccCCCCCcccCCCCccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred CCcccceEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCC
Q 003763 561 HGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVG 640 (797)
Q Consensus 561 ~~i~~~~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~ 640 (797)
.+|.++|+|+++||+||||||||||+|+++||||+||+++|+.+++||+||+||||||||+||||+|+|++|+|+ |.++
T Consensus 667 ~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~~vm~RgtF~Niri~N~l~-g~~g 745 (898)
T PTZ00092 667 KSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDFNTYGARRGNDEVMVRGTFANIRLINKLC-GKVG 745 (898)
T ss_pred CCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCchhhcceeccccceeeeec-cCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 8899
Q ss_pred CceeccCCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceec
Q 003763 641 PKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 720 (797)
Q Consensus 641 ~~~~~~~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~ 720 (797)
++|.|+|+|+.|+|||+|++|+++|+++|||||+|||||||||||||++++|||+||||+||+||||+||+|||||||+|
T Consensus 746 ~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivaG~nyG~GSSRe~AA~~~~~lGvraVIA~SF~rIh~~Nli~~GvlPL~f 825 (898)
T PTZ00092 746 PNTVHVPTGEKMSIYDAAEKYKQEGVPLIVLAGKEYGSGSSRDWAAKGPYLQGVKAVIAESFERIHRSNLVGMGILPLQF 825 (898)
T ss_pred CceEeCCCCcEecHHHHHHHHHHcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEecHHHHHHhhhhhcCcceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhcccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCeEEEEEecCCCHHHHHHHHhcCHHHHHHHHHhh
Q 003763 721 KPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 794 (797)
Q Consensus 721 ~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~i~~aGGll~~v~~~~~~ 794 (797)
.++++++++++.+++.++|++... .++||++++++..+|++|++.++++|+.|++|+++||+|||+++++++
T Consensus 826 ~~~~~~~~l~~~~~~~i~i~~~~~--~l~p~~~v~v~~~~G~~~~~~~r~dt~~e~~y~~~GGiL~yv~~~~~~ 897 (898)
T PTZ00092 826 LNGENADSLGLTGKEQFSIDLNSG--ELKPGQDVTVKTDTGKTFDTILRIDTEVEVEYFKHGGILQYVLRKLVK 897 (898)
T ss_pred CCcccHHHhcCCCCeEEEEecccc--ccCCCCeEEEEeCCCcEEEEEEeCCCHHHHHHHHcCCHHHHHHHHHhc
Confidence 999999999999999999987321 589999998877788999999999999999999999999999999875
No 3
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-233 Score=1876.84 Aligned_cols=790 Identities=73% Similarity=1.207 Sum_probs=779.6
Q ss_pred ChHHHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceecc
Q 003763 1 MRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQ 80 (797)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (797)
||||++++|+||+||||.+|+||+||||+|+|..++++++++|+..||+||.|||.||||+.++|+|+.++|||+||+||
T Consensus 103 MRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r~~~alqkN~~lEF~RNkERf~FlKWgs~af~NmlivPPGsGivHQ 182 (892)
T KOG0452|consen 103 MRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFARSADALQKNQELEFERNKERFTFLKWGSRAFDNMLIVPPGSGIVHQ 182 (892)
T ss_pred HHHHHHHcCCCHHHcCCCCCcceEeeeeeEEeeccCHHHHhhcceeeeecchhhhhhhhhhhHhhcceEEeCCCCceeEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeecCCCcccCCeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhh
Q 003763 81 VNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATD 160 (797)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakD 160 (797)
||+|||||+|+.+++++|||.+|||||||+|++|||++||||||+|++++|+|||+.|.+|+||+.+|+|+|.++||++|
T Consensus 183 vNLEYLaRvVF~~~~~lyPDSvVGTDSHtTMidGlGvlGWGVGGIEaEAvMLGqpiSmvlP~ViG~~L~Gkl~~~vTstD 262 (892)
T KOG0452|consen 183 VNLEYLARVVFESKDLLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVLPEVIGYKLTGKLSPLVTSTD 262 (892)
T ss_pred eehhhhhheeeccCceecccccccccCcceeecccceeeccccceehhhhhhcCchheecccceeEEeccccCCCceeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHH
Q 003763 161 LVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRA 240 (797)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~~ 240 (797)
++|+|+++||+.|++||||||+|+|+++||+.||+||+||+||||||.||||.|+.|+.||+.|||+++.++.++.|+|+
T Consensus 263 lVLtiTk~LRq~GVvGKFVEF~G~Gva~LSiaDRaTIaNMcPEYGAt~gfFPvD~vtl~yl~~Tgrs~~~~~~i~~yLka 342 (892)
T KOG0452|consen 263 LVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANMCPEYGATMGFFPVDEVTLQYLKQTGRSEEKLDIIEKYLKA 342 (892)
T ss_pred hhhhHHHHHHHhccceeeEEEecCccceechhhhhhhhhcCccccceeeeeccchhHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccCC
Q 003763 241 NKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHG 320 (797)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (797)
.++|+++..++.++.|.+++++||++|+|+|++|++|+++++|++++.+|.+||++++++||+.++++.+.+.+.+.|+|
T Consensus 343 ~~~f~~~~~~~q~p~yt~~l~l~L~~vvp~vSGPKRPhDrV~v~dmk~Df~scL~~~vgFKgFai~~e~q~~~v~f~~~g 422 (892)
T KOG0452|consen 343 VKMFRDYNDPSQDPVYTQVLELDLGTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVGFKGFAIAPEAQSKSVEFQYDG 422 (892)
T ss_pred HhhhhhccCcccCcceeeEEEEecCceeeccCCCCCCccccchhhHHHHHHHhhcCcccccccccChhHhhceEEEEECC
Confidence 99999998888899999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred CcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEe
Q 003763 321 TPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIV 400 (797)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~ 400 (797)
.+++|.||+|++|+|+||||+|||++|.+|++|||+|++.|++|+||+|++++|||..|..||.+.|++.+|.++||.|+
T Consensus 423 ~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgLlAKkAv~~GL~v~PyikTSLsPGSgvVt~YL~~SGv~pyL~klGF~Iv 502 (892)
T KOG0452|consen 423 TTAKLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVVTKYLSESGVLPYLEKLGFDIV 502 (892)
T ss_pred eeeEeccCcEEEEEEecccCCCCcHHhhhhhHHHHHHHhcCceecceeecccCCCCchhhhhhhhccchhHHHhcCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhcccccccCCCCccccCC
Q 003763 401 GYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGK 480 (797)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i~~d~~~~plg~~~ 480 (797)
+|||++||||+|++.++...+|.+|++++++|+|+||||+||+||.+++||||||++|+||||+|++++|++++|+|.++
T Consensus 503 GYGC~TCiGNsgpl~e~V~~ai~~ndlV~~gvLSGNrNFEGRvhp~tRANYLASPpLvvaYaiaGtV~IDfe~eplg~~~ 582 (892)
T KOG0452|consen 503 GYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVHPNTRANYLASPPLVVAYAIAGTVNIDFETEPLGVDP 582 (892)
T ss_pred ccccceeccCCCCCCHHHHHhhhcCCeEEEEEeecCCCccccccccchhhhccCchHHhhhhhcceeecceeccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCccccCCCCCccCCCCCCCC
Q 003763 481 DGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGP 560 (797)
Q Consensus 481 ~G~~v~l~diwP~~~ei~~~~~~~~~p~~~~~~y~~~~~~~~~~~~l~~~~~~~~~w~~~st~i~~pp~f~~~~~~~~~~ 560 (797)
+|+.+||+||||+++||++++++++.|+||++.|+.|..|++.|+.|+.|++.+|+||++||||++||||+.++..+..+
T Consensus 583 ~Gk~vfl~DIWPtr~Ev~~ve~~~Vip~mFk~~y~~I~~gn~~Wn~L~~p~~~Ly~Wd~~STYI~~ppfF~~mT~~~p~~ 662 (892)
T KOG0452|consen 583 DGKNVFLRDIWPTREEVAEVEEEHVIPSMFKEVYEKIELGNPDWNQLEVPSSKLYPWDPKSTYIKEPPFFEGMTRDLPGP 662 (892)
T ss_pred CCCeEEEeecCCCHHHHHHHHHhcccHHHHHHHHHHHhhcChhhhhccCCccceeccCCCCceecCCccccccccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccceEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCC
Q 003763 561 HGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVG 640 (797)
Q Consensus 561 ~~i~~~~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~ 640 (797)
++|++|++|+.+||+||||||||||+|+++||||+||.+||+++++||+||+||||+++|.||||+|||+.|+|+ .+.|
T Consensus 663 ~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg~tprdFNsYGsRRGND~vMaRGTFANIrlvNkl~-~k~g 741 (892)
T KOG0452|consen 663 QSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDAVMARGTFANIRLVNKLL-SKVG 741 (892)
T ss_pred ccccceeEEEeccCcccccccCCCccccccCHHHHHHHhcCCChhhccccccccCchhhhhcccchhhHHHHHHh-cccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 4899
Q ss_pred CceeccCCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceec
Q 003763 641 PKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 720 (797)
Q Consensus 641 ~~~~~~~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~ 720 (797)
|.|.|+|+||.++|||+|++|+++|.+.||+||+.|||||||+|||++|.++||+||||+||+||||+||++|||+||+|
T Consensus 742 P~TvHiPsge~ldvFdAA~~Y~~~g~p~iilaGkeYGsGsSRDWAAKGP~LlGvKAViaeS~ErIHrsnLvGmGIiPl~f 821 (892)
T KOG0452|consen 742 PKTVHIPSGEELDVFDAAERYKSEGIPLIILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESYERIHRSNLVGMGIIPLQF 821 (892)
T ss_pred CceEecCCCCeecHhhHHHHHHhcCCceEEEeccccCCCCccchhhcCchhhhhHHHHHHHHHHHHhhccccceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhcccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCeEEEEEecCCCHHHHHHHHhcCHHHHHHHHHh
Q 003763 721 KPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 793 (797)
Q Consensus 721 ~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~i~~aGGll~~v~~~~~ 793 (797)
..++++++|++.|.|.++|.+++. .|+||+.++|+..+|+.|.+.+++|++.|+.|+++||||||+.|+++
T Consensus 822 ~~Ge~AdtLgLtG~E~yti~lP~~--~lkPgq~i~v~~dtGk~F~~~~rFdteVeltyy~~GGiL~y~iRk~~ 892 (892)
T KOG0452|consen 822 LPGEDADTLGLTGRERYTIHLPEN--ILKPGQDITVTTDTGKVFVCTLRFDTEVELTYYKNGGILNYMIRKLS 892 (892)
T ss_pred cCCCChhhcCcccceeEEEECCcc--cCCCCceEEEEecCCcEEEEEEEecceEEEEEEecCCcHHHHHhhcC
Confidence 999999999999999999999984 38999999999888999999999999999999999999999999873
No 4
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=1.9e-229 Score=1978.06 Aligned_cols=782 Identities=65% Similarity=1.066 Sum_probs=744.8
Q ss_pred ChHHHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceecc
Q 003763 1 MRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQ 80 (797)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (797)
|||+++++|+||.++||.+||+|+|||+||++..++.+++..|+.++|+||.|||+||||++++|.+++|+|||+|||||
T Consensus 86 mrda~~~~G~d~~~inp~vPvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fLkw~~~~f~~~~v~ppg~GI~Hq 165 (876)
T TIGR01341 86 MREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTEYALEFNMELEFERNLERYQFLKWAQKAFRNFRVVPPGTGIIHQ 165 (876)
T ss_pred HHHHHHHcCCCHHHcCCCCCcceEeCCCCCCCCCCCcCHHHHHHHHHHHhCHHHHhHHHHHHHHcccCCCCCCCCCeece
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeecCC----CcccCCeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCC
Q 003763 81 VNLEYLGRVVFNTN----GMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGV 156 (797)
Q Consensus 81 v~~E~~a~~v~~~~----G~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gV 156 (797)
||+|+||++|+.++ |+++|+++|||||||||+||||+|||||||+|++++|+||++||++||||+|+|+|+|++||
T Consensus 166 V~lE~la~~v~~~~~~g~g~a~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeavmlgq~~~~~vPevvgV~LtG~L~~gV 245 (876)
T TIGR01341 166 VNLEYLATVVFKAEVDGELTAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVKLTGKLQEGV 245 (876)
T ss_pred echhhcccceeecccCCcceeccceeeecCCCCCCCCeecceEecccHHHHHHHHhCCcEEeeCCCEEEEEEEeecCCCc
Confidence 99999999999653 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHH
Q 003763 157 TATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIES 236 (797)
Q Consensus 157 takDviL~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~ 236 (797)
|||||||+|+++||++|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.+||++++++++++
T Consensus 246 tAkDliL~i~~~L~~~G~vgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~l~~~ 325 (876)
T TIGR01341 246 TATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEYGATCGFFPIDDVTLQYLRLTGRDGDHVELVEK 325 (876)
T ss_pred CHHHHHHHHHHHhcccCcceEEEEEeCccccccCHhHHhhhhhcchhhCceEEEEcCChhHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred HHHHhhhhcccCCCC-CCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccce
Q 003763 237 YLRANKMFVDYSEPQ-SERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAE 315 (797)
Q Consensus 237 y~~~~~l~~~~~~~D-~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (797)
|.|+|++|+ +| ++|.|+++++||||+|||+||+|++|||++||+++.+.|.+++....+.+|+.+... ...
T Consensus 326 y~k~~~l~~----~d~~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~----~~~ 397 (876)
T TIGR01341 326 YARAQGLFY----DDSEEPRYTDVVELDLSDVEPSVAGPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKE----PLK 397 (876)
T ss_pred HHHhccccc----CCCCCCceeEEEEEEcccceeeccCCCChhhccChhhcchhhhhHhhhhcccccccchhh----hhh
Confidence 999999995 45 799999999999999999999999999999999999988877654332222221101 111
Q ss_pred eccCCCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhc
Q 003763 316 FNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHL 395 (797)
Q Consensus 316 ~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~a 395 (797)
..++|++..|.||+|++|||||||||||||+|+||++|+|||+++|+||+||||++|+|||++|++||+++||+++|+++
T Consensus 398 ~~~~g~~~~l~~g~I~~a~IgSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~a 477 (876)
T TIGR01341 398 KKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGLLPYLEEL 477 (876)
T ss_pred eeccCcceecCCCcEEEEEeeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHHHHHc
Confidence 22468888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhcccccccCCCCc
Q 003763 396 GFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEP 475 (797)
Q Consensus 396 G~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i~~d~~~~p 475 (797)
||.|++||||+|+||+++++++++++|.+++++.++|||+||||+||||+..+++|||||+|||||||+|+|++|+++||
T Consensus 478 Gf~i~~~GCg~CiG~~g~l~~~~e~ai~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~~dp 557 (876)
T TIGR01341 478 GFNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPPLVVAYALAGNIDINLYTEP 557 (876)
T ss_pred CCEEecCCccccccCCCCCCcchhcccccCCceEEEEeccCCCCCCCCCCCCCceEECCHHHHHHHHHhCCcccCccCCC
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred cccCCCCceeccccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCccccCCCCCccCCC
Q 003763 476 VGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTM 555 (797)
Q Consensus 476 lg~~~~G~~v~l~diwP~~~ei~~~~~~~~~p~~~~~~y~~~~~~~~~~~~l~~~~~~~~~w~~~st~i~~pp~f~~~~~ 555 (797)
+|.+++|++|||+||||+.+||++++.+.++|++|.+.|.+++.+++.|++|+++.++.|+||++||||++||||++++.
T Consensus 558 lg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~~~~~ 637 (876)
T TIGR01341 558 IGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYENIFEGNERWNSIKTPSGDTYSWDEKSTYIRLPPFFEEMKQ 637 (876)
T ss_pred cccCCCCCeeeccCCCCChHHHHHHHHhcCCHHHcccccccccCCcccccccCCCCCCccccCCCCCcccCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCcccceEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhc
Q 003763 556 SPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLL 635 (797)
Q Consensus 556 ~~~~~~~i~~~~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~ 635 (797)
.++++.+|+++|+|+++||+||||||||||+|+++|||++||+++|+.++|||+||+||||||||+||||+|+|+.|+|+
T Consensus 638 ~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFanir~~N~l~ 717 (876)
T TIGR01341 638 DPEEVEDIKGARILLLLGDSITTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIKNLMV 717 (876)
T ss_pred CCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccccCHHHHHHhhcccchhhhhcc
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeccCCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCc
Q 003763 636 NGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGI 715 (797)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gi 715 (797)
+|.+|++|+|+|+|+.++|||+|++|+++|+++|||||+|||||||||||+|++++|||+||||+||+||||+||+||||
T Consensus 718 ~g~egg~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~~yG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~N~~~~Gi 797 (876)
T TIGR01341 718 KGKEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGSSRDWAAKGTKLLGVKAVIAESFERIHRSNLVGMGV 797 (876)
T ss_pred cCccCceeEecCCCccccHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEccHHHHHHhhHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceecCCcchhhcccCCCCeEEEEeCCCCcccCCCCcEEEEEc--CCC--eEEEEEecCCCHHHHHHHHhcCHHHHHHHH
Q 003763 716 IPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVT--DSG--KSFTCVIRFDTEVELAYFDHGGILQYVIRN 791 (797)
Q Consensus 716 lpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~--~~g--~~~~~~~~~~~~~e~~i~~aGGll~~v~~~ 791 (797)
|||+|+++++|++|+++++|.++|... .+++||++++++. .+| ++|.+.++++|+.|++|+++||+|||++++
T Consensus 798 lpl~~~~~~~~~~l~l~g~e~~~i~~~---~~l~pg~~v~v~~~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~yv~r~ 874 (876)
T TIGR01341 798 IPLQFPQGEDAETLGLTGDETIDIDGI---KDLKPGKEVTVTFTNSKGEKITFKCVLRIDTEVELDYYKHGGILQYVLRK 874 (876)
T ss_pred ceEecCCCCCHHHhCCCCCCeEEEcCc---cccCCCCEEEEEEEcCCCCEEEEEEEEecCCHHHHHHHHcCCHHHHHHHh
Confidence 999999999999999999999998532 2578999887753 567 788999999999999999999999999998
Q ss_pred Hh
Q 003763 792 LI 793 (797)
Q Consensus 792 ~~ 793 (797)
++
T Consensus 875 ~~ 876 (876)
T TIGR01341 875 FL 876 (876)
T ss_pred hC
Confidence 74
No 5
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=2.6e-228 Score=1974.50 Aligned_cols=776 Identities=60% Similarity=1.016 Sum_probs=740.6
Q ss_pred ChHHHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceecc
Q 003763 1 MRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQ 80 (797)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (797)
|||+++++|+||.++||.+||+++|||+||++..++.+++.+|+.++|+||.|||+||||++++|.+++|+|||+|||||
T Consensus 103 mr~a~~~~G~d~~~~~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fLkw~~~~f~~~~v~pPg~GI~Hq 182 (889)
T PRK12881 103 MRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRNAERYQFLKWGMQAFDNFRVVPPGTGIMHQ 182 (889)
T ss_pred HHHHHHHcCCChhhcCCCCCcceEeCCCCccCCCCCCCHHHHHHHHHHHhhHHHhChHHHHHHHccCCCCCCCCCCccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeecC----CCcccCCeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCC
Q 003763 81 VNLEYLGRVVFNT----NGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGV 156 (797)
Q Consensus 81 v~~E~~a~~v~~~----~G~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gV 156 (797)
|++|+||++|+.+ .|+++|+++|||||||||+||||+|||||||+|++++|+||++||++||||+|+|+|+|++||
T Consensus 183 V~lE~la~vv~~~~~~~~g~~~PdtlVGtDSHT~~~galG~lg~GVGg~Eaeaamlgq~~~~~vPevigV~l~G~L~~gV 262 (889)
T PRK12881 183 VNLEYLARVVHTKEDDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLGQPVYMLIPDVVGVELTGKLREGV 262 (889)
T ss_pred EchhhhcccceecccCCcceecCCeEEecCCCCCCCccccceEecccHHHHHHHHhCCcEEeeCCCEEEEEEEeecCCCc
Confidence 9999999999965 379999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHH
Q 003763 157 TATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIES 236 (797)
Q Consensus 157 takDviL~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~ 236 (797)
|||||||+|+++||++|++||+|||+|||+++||+++|||||||++|||||+||||+|++|++||+.|||++++++++++
T Consensus 263 tAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~v~l~e~ 342 (889)
T PRK12881 263 TATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANMAPEYGATMGFFPVDEQTLDYLRLTGRTEAQIALVEA 342 (889)
T ss_pred CHHHHHHHHHHHhcccccceEEEEEECccccccCHHHHHHHhcccHhhCceEEEecCChhHHHHHHhcccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCcccccccccee
Q 003763 237 YLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEF 316 (797)
Q Consensus 237 y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (797)
|.|+|++|++ +|++|.|+++++||||+|+|+||+|++|||++||++++++|.+++......++.
T Consensus 343 y~ka~~l~~~---~d~~a~Y~~vieiDLs~veP~vAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~------------- 406 (889)
T PRK12881 343 YAKAQGLWGD---PKAEPRYTRTLELDLSTVAPSLAGPKRPQDRIALGNVKSAFSDLFSKPVAENGF------------- 406 (889)
T ss_pred HHHHHHhhcC---cCCCCceeEEEEEEccceeEeccCCCChhhCcCchhcCcCHHHHhhhHHHhhhh-------------
Confidence 9999999974 688999999999999999999999999999999999999888766432211111
Q ss_pred cc---CCCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHH
Q 003763 317 NF---HGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLN 393 (797)
Q Consensus 317 ~~---~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~ 393 (797)
.| .+....+.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+
T Consensus 407 ~~~~~~~~~~~l~~g~V~~a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l~ 486 (889)
T PRK12881 407 AKKAQTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLAPGSKVVTEYLERAGLLPYLE 486 (889)
T ss_pred hcccccCCCccccCccEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEeCCCHHHHHHHHHcCcHHHHH
Confidence 12 234456889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcEEeccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhcccccccCCC
Q 003763 394 HLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFET 473 (797)
Q Consensus 394 ~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i~~d~~~ 473 (797)
++||.|++||||+|+||++++.++++++|++|++++++|||+||||+||||+..+++|||||+|||||||+|+|++|+++
T Consensus 487 ~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~g~~~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~~~ 566 (889)
T PRK12881 487 KLGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPNIKANFLASPPLVVAYALAGTVRRDLMT 566 (889)
T ss_pred HcCCEEeCCcchhhhccCCCCCchhhhhcccCCceeEEEeecCCCCCCCCCCCCCceEECCHHHHHHHHhcCceecCCCC
Confidence 99999999999999999999999999999999987889999999999999999999999999999999999999999999
Q ss_pred CccccCCCCceeccccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCccccCCCCCccC
Q 003763 474 EPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDM 553 (797)
Q Consensus 474 ~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~p~~~~~~y~~~~~~~~~~~~l~~~~~~~~~w~~~st~i~~pp~f~~~ 553 (797)
||+|++++|++|||+||||+.+|+++++.+.+++++|.+.|++++.+++.|++|+++.+++|+||++||||++||||+.+
T Consensus 567 dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~wd~~StyI~~pPff~~~ 646 (889)
T PRK12881 567 EPLGKGKDGRPVYLKDIWPSSAEIDALVAFAVDPEDFRKNYAEVFKGSELWAAIEAPDGPLYDWDPKSTYIRRPPFFDFS 646 (889)
T ss_pred CCcccCCCCCEeeccCCCCChHHHHHHHHcCCCHHHhhhhhhhhcCCccccccccCCCCCeeccCCCCCcccCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCcccceEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhh
Q 003763 554 TMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNK 633 (797)
Q Consensus 554 ~~~~~~~~~i~~~~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~ 633 (797)
...++++.+|+++|+|+++||+||||||||||+|+++||||+||+++|+.++||||||+||||||||+||||+|+|++|+
T Consensus 647 ~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsyg~rRgN~evm~rgtF~nir~~N~ 726 (889)
T PRK12881 647 MGPAASIATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSRRGNHEVMMRGTFANVRIKNL 726 (889)
T ss_pred ccCCCCCCCccCCEEEEEECCCCcccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHhhhhccccCcccce
Confidence 88788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCceeccCCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccC
Q 003763 634 LLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGM 713 (797)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~ 713 (797)
|+++.+|++|.|+|+|+.|+|||+|++|+++|+++|||||+|||||||||||||++++|||+||||+||+||||+||+||
T Consensus 727 l~~~~egg~t~~~p~g~~~~i~daA~~y~~~g~p~iIvaG~nyG~GSSRe~Aa~~~~~lGv~aVIA~SFaRIh~~Nli~~ 806 (889)
T PRK12881 727 MIPGKEGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYGTGSSRDWAAKGTRLLGVKAVIAESFERIHRSNLVGM 806 (889)
T ss_pred eccccccCeeEeCCCCcEeeHHHHHHHHHhcCCceEEEecCccCCCCcHHHHHHHHHHhCCcEEEEecHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceecCCcchhhcccCCCCeEEEEeCCCCcccCCCCcEEEEE--cCCC--eEEEEEecCCCHHHHHHHHhcCHHHHHH
Q 003763 714 GIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV--TDSG--KSFTCVIRFDTEVELAYFDHGGILQYVI 789 (797)
Q Consensus 714 Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~--~~~g--~~~~~~~~~~~~~e~~i~~aGGll~~v~ 789 (797)
|||||+|+++.+++.|+++++|+++|+.... .+.||+++++. ..+| .+|.+.++++++.|++|+++||+|+|++
T Consensus 807 GilpL~f~~~~~~~~l~l~g~d~i~I~~~~~--~i~p~~~v~v~~~~~~G~~~~~~~~~r~dt~~e~e~~~aGGiL~yv~ 884 (889)
T PRK12881 807 GVLPLQFKGGDSRQSLGLTGGETFDIEGLPG--EIKPRQDVTLVIHRADGSTERVPVLCRIDTPIEVDYYKAGGILPYVL 884 (889)
T ss_pred CcceEEeCCccchhhcCcCCCCEEEEeCCcc--ccCCCCeEEEEEEeCCCCEEEEEEEeccCCHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999975542 47899988763 4566 5677778888999999999999999999
Q ss_pred HHHhh
Q 003763 790 RNLIN 794 (797)
Q Consensus 790 ~~~~~ 794 (797)
+++++
T Consensus 885 ~~~~~ 889 (889)
T PRK12881 885 RQLLA 889 (889)
T ss_pred HHhhC
Confidence 99863
No 6
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=8e-228 Score=1966.40 Aligned_cols=777 Identities=62% Similarity=1.063 Sum_probs=744.4
Q ss_pred ChHHHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceecc
Q 003763 1 MRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQ 80 (797)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (797)
|||+++++|+||.++||.+||++++||+||++..++.++...|+.++|+||.|||+||||++++|.+++|+|||+|||||
T Consensus 104 mr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~er~~fLkw~~~~f~~~~v~pPg~GI~Hq 183 (888)
T PRK09277 104 MRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGTPDAFEKNVELEFERNEERYQFLKWGQKAFDNFRVVPPGTGICHQ 183 (888)
T ss_pred HHHHHHHcCCChhhcCCCCCeEEEeCCCCcCCCCCCcCHHHHHHHHHHHhCHHHHhHHHHHHHHhcCCCCCCCCCCccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeecC-CC--cccCCeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCc
Q 003763 81 VNLEYLGRVVFNT-NG--MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVT 157 (797)
Q Consensus 81 v~~E~~a~~v~~~-~G--~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVt 157 (797)
|++||||+||+.+ +| +++|+++|||||||||+||||+|||||||+|++++|+||++||++||||+|+|+|+|++|||
T Consensus 184 V~lE~la~vv~~~~~G~~~~~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeaam~g~~~~~~vPevvgV~LtG~L~~gVt 263 (888)
T PRK09277 184 VNLEYLAPVVWTREDGELVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPSSMLIPEVVGVKLTGKLPEGVT 263 (888)
T ss_pred echhhcccceeecCCCceeeccceEEecCCCCCCCCcccccEEccCHHHHHHHHhcCcEEeeCCCEEEEEEEeecCCCcc
Confidence 9999999999977 78 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHH
Q 003763 158 ATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESY 237 (797)
Q Consensus 158 akDviL~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y 237 (797)
||||||+|+++||++|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.|||++++++++++|
T Consensus 264 AkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~v~~~e~y 343 (888)
T PRK09277 264 ATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYGATCGFFPIDEETLDYLRLTGRDEEQVALVEAY 343 (888)
T ss_pred HhHHHHHHHHHhcccCcccEEEEEECcccccCCHHHHHHHhccchhhCceEEEecCChhHHHHHHhcCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceec
Q 003763 238 LRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFN 317 (797)
Q Consensus 238 ~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (797)
.|++.+|+ .+|++|.|+++++||||+|+|+||+|++|||++||+++++.|.+++.. +.++. ..+..
T Consensus 344 ~ka~~~~~---~~D~~a~Y~~vieiDLs~leP~VAgP~~P~~~v~v~e~~~~~~~~~~~--~~~~~---------~~~~~ 409 (888)
T PRK09277 344 AKAQGLWR---DPLEEPVYTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKEAFAKSAEL--GVQGF---------GLDEA 409 (888)
T ss_pred HHHHhhhc---cCCCCCCEEEEEEEEccceeEecCCCCCcccCcChhhcCcchhhhchh--hhhhh---------hhhhh
Confidence 99999996 258899999999999999999999999999999999999887654321 11111 12344
Q ss_pred cCCCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCc
Q 003763 318 FHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGF 397 (797)
Q Consensus 318 ~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~ 397 (797)
++|....+.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+++||
T Consensus 410 ~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l~~aGf 489 (888)
T PRK09277 410 EEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAPGSKVVTDYLEKAGLLPYLEALGF 489 (888)
T ss_pred hcCCCccccCCceEEEEEeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEEEeCCCHHHHHHHHHCChHHHHHHcCC
Confidence 67888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhcccccccCCCCccc
Q 003763 398 HIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVG 477 (797)
Q Consensus 398 ~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i~~d~~~~plg 477 (797)
.|++||||+|+||++++.++++++|.++++++++|||+||||+||||+..+++|||||+|||||||+|+|++|+++||+|
T Consensus 490 ~i~~~GCg~CiG~~g~l~~~~~~~i~~~e~~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AlaG~I~~d~~~dplg 569 (888)
T PRK09277 490 NLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKANYLASPPLVVAYALAGTVDIDLEKDPLG 569 (888)
T ss_pred EEeCCCccccccCCCCCCchhhhhcccCCceeEEEeccCCCCCCCCCCCCCceEEcCHHHHHHHHHcCccccCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeccccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCccccCCCCCccCCCCC
Q 003763 478 VGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSP 557 (797)
Q Consensus 478 ~~~~G~~v~l~diwP~~~ei~~~~~~~~~p~~~~~~y~~~~~~~~~~~~l~~~~~~~~~w~~~st~i~~pp~f~~~~~~~ 557 (797)
++++|++|||+||||+.+||++++.+.++|++|.+.|..++.+++.|++++++.++.|+||++||||++||||++++..+
T Consensus 570 ~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~~~~~~~ 649 (888)
T PRK09277 570 TDKDGNPVYLKDIWPSDEEIDAVVAKAVKPEMFRKEYADVFEGDERWNAIEVPEGPLYDWDPDSTYIRNPPYFEGMLAEP 649 (888)
T ss_pred cCCCCCEeeccCCCCChHHHHHHHHccCCHHHhhhhcccccCCchhhccCCCCCCCccccCCCCCcccCCCCCCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred CCCCCcccceEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCC
Q 003763 558 PGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNG 637 (797)
Q Consensus 558 ~~~~~i~~~~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~ 637 (797)
.++.++.++|+|+++|||||||||||||+|+++||||+||+++|+.++|||+||+||||||||+||||+|+|++|+|++|
T Consensus 650 ~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~RgtfaNir~~N~l~~g 729 (888)
T PRK09277 650 GPVRDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYGSRRGNHEVMMRGTFANIRIRNEMVPG 729 (888)
T ss_pred CCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccccccccchhhhheeccccchhhhcccC
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeccCCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccc
Q 003763 638 EVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIP 717 (797)
Q Consensus 638 ~~~~~~~~~~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilp 717 (797)
.+|++|+|+|+|+.|+|||+|++|+++|+++|||||+|||||||||||+|++++|||+||||+||+|||++||+||||||
T Consensus 730 ~egg~t~~~p~g~~~~i~daA~~y~~~g~~~iivag~nyG~GSSRe~Aa~~~~~lgi~avia~sf~rI~~~Nli~~Gilp 809 (888)
T PRK09277 730 VEGGYTRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSSRDWAAKGTRLLGVKAVIAESFERIHRSNLVGMGVLP 809 (888)
T ss_pred CccceEEECCCCcEeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEecHHHHHHhhHhhcCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcchhhcccCCCCeEEEEeCCCCcccCCCCcEEEEE--cCCC--eEEEEEecCCCHHHHHHHHhcCHHHHHHHHHh
Q 003763 718 LCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV--TDSG--KSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 793 (797)
Q Consensus 718 l~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~--~~~g--~~~~~~~~~~~~~e~~i~~aGGll~~v~~~~~ 793 (797)
|+|+++++|++|+++++|.++|+... +++||++++++ ..+| ++|+++++++|+.|++|+++||+|||++++++
T Consensus 810 l~~~~~~~~~~lgl~g~e~~~i~~l~---~l~p~~~v~v~~~~~~G~~~~~~~~~r~dt~~Ei~y~~~GGiL~yv~r~~~ 886 (888)
T PRK09277 810 LQFKPGESRKTLGLDGTETFDIEGLE---DLKPGATVTVVITRADGEVVEFPVLCRIDTAVEVDYYRNGGILQYVLRDLL 886 (888)
T ss_pred eecCCcccHHHhCCCCCceEEEcCcc---cCCCCCEEEEEEEeCCCCEEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999999999985332 47899888773 4566 77999999999999999999999999999987
Q ss_pred h
Q 003763 794 N 794 (797)
Q Consensus 794 ~ 794 (797)
+
T Consensus 887 ~ 887 (888)
T PRK09277 887 A 887 (888)
T ss_pred h
Confidence 5
No 7
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=2.3e-224 Score=1928.64 Aligned_cols=757 Identities=46% Similarity=0.820 Sum_probs=719.7
Q ss_pred ChHHHHhhCCCCCccCCCCceEEEecCcccCCCCC-chhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceec
Q 003763 1 MRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVAR-SENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVH 79 (797)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~-~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~H 79 (797)
|||+++++|+||++|||.+|++|||||||++|..+ +.+++..|+.+||+||.|||+||||++++|+|++|+|||+||||
T Consensus 93 mr~a~~~~g~dp~~inp~vP~dlviDHsv~vd~~g~~~da~~~n~~~e~~rN~Ery~FLkwa~~af~~~~~~ppG~GI~H 172 (858)
T TIGR02333 93 LRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVEYGGFDPDAFEKNRAIEDRRNEDRFHFINWTKTAFKNVDVIPAGNGIMH 172 (858)
T ss_pred hHHHHHHcCCChhhcCCCCCCeEEeCCcceeccCCCCcchhHHHHHHHHhhhHHHHHHHHHHHHHhCCcEEeCCCCCEee
Confidence 89999999999999999999999999999999999 79999999999999999999999999999999999999999999
Q ss_pred ccccccccceeecCCCcccCCeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchh
Q 003763 80 QVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTAT 159 (797)
Q Consensus 80 qv~~E~~a~~v~~~~G~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtak 159 (797)
||++||||+||+.++|+++|+++|||||||||+||||+|||||||+|++++|+||++||++||||+|+|+|+|++|||||
T Consensus 173 QV~lE~la~vv~~~~G~a~Pd~ivGTDSHT~~~GgLG~lg~GVGg~Ea~aamlg~p~~l~vPevIgV~LtG~L~~gVtak 252 (858)
T TIGR02333 173 QINLEKMSPVIQVKNGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTGKRQPGITAT 252 (858)
T ss_pred eEchhhccccccccCCcccCCeEEecCCCCCCCCccceeEecCCHHHHHHHHhCCeeeeeCCcEEEEEEEeecCCCCCHh
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHH
Q 003763 160 DLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLR 239 (797)
Q Consensus 160 DviL~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~ 239 (797)
||||+|+++||++|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.|||++++++++++|.|
T Consensus 253 DliL~i~~~Lr~~Gvvgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~lve~y~k 332 (858)
T TIGR02333 253 DIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREPEQVKLVETYAK 332 (858)
T ss_pred HHHHHHHHHHhhcCccceEEEEeCCccccCCHHHHHHHhccchhhCceEEEECCChhHHHHHHhcCCchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred HhhhhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccC
Q 003763 240 ANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFH 319 (797)
Q Consensus 240 ~~~l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (797)
++++|++ +|++|.|+++|+||||+|||+||+|++|||++|++|+++.... .... . ...
T Consensus 333 ~~~l~~d---~d~~a~Y~~vieiDLs~leP~VAgP~~Pd~~vpl~e~~~~~~~------------~~~~--~-----~~~ 390 (858)
T TIGR02333 333 AAGLWAD---SLKHAVYERVLEFDLSSVVRNMAGPSNPHARVPTSDLAARGIA------------GPAE--E-----QPE 390 (858)
T ss_pred HHHhhcC---cCCCCCeEEEEEEEcccceecccCCCChhhcCCHHHhhhcccc------------cccc--c-----ccc
Confidence 9999964 5789999999999999999999999999999999998752110 0000 0 012
Q ss_pred CCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEE
Q 003763 320 GTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHI 399 (797)
Q Consensus 320 g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i 399 (797)
| .+.||+|++|||||||||||||+|+||++|+|||+++|+||+||||++|+|||++|++||+++||+++|+++||.|
T Consensus 391 g---~l~~g~V~ia~IgSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v 467 (858)
T TIGR02333 391 G---LMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPELEQLGFGI 467 (858)
T ss_pred C---cccCCceeEEEEECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEeCCCHHHHHHHHHcCcHHHHHHcCCEE
Confidence 3 4789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhcccccccCCCCccccC
Q 003763 400 VGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVG 479 (797)
Q Consensus 400 ~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i~~d~~~~plg~~ 479 (797)
++||||+|+||+|++.+++++.|.+++++.++|||+||||+||||+..+.+|||||++||||||+|+|+||+++||||.|
T Consensus 468 ~~~GCg~CiG~~G~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLASP~lVaA~AlaG~I~~d~~~dplg~~ 547 (858)
T TIGR02333 468 VAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEKDVLGVD 547 (858)
T ss_pred eCCcchhccCcCCCCCcchhhhhcccCceeEEEeccCCCCCCCCCCCcceeEecCHHHHHHHHHhCceeeccCcCccccC
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred CCCceeccccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCccccCCCCCccCCCCCCC
Q 003763 480 KDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPG 559 (797)
Q Consensus 480 ~~G~~v~l~diwP~~~ei~~~~~~~~~p~~~~~~y~~~~~~~~~~~~l~~~~~~~~~w~~~st~i~~pp~f~~~~~~~~~ 559 (797)
+||++|||+||||+.+||++++.+.++|++|++.|.+++.+++ ++++.+++|+||++||||++||||+.+ +.+
T Consensus 548 ~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~~~~~~~----~~~~~~~~~~w~~~Styi~~pp~f~~~---~~~ 620 (858)
T TIGR02333 548 ADGKPIRLKDIWPSDEEIDAVVAAAVKPEQFRKVYIPMFDLDD----TQSAVSPLYDWRPMSTYIRRPPYWEGA---LAG 620 (858)
T ss_pred CCCCeEeecCCCCChHHHHHHHHhccChhhhhhhccccccCCc----cccCcCCCccCCCCCceecCCCCccCC---CCc
Confidence 9999999999999999999999999999999999999888876 677888999999999999999999987 334
Q ss_pred CCCcccceEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcC--C
Q 003763 560 PHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLN--G 637 (797)
Q Consensus 560 ~~~i~~~~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~--~ 637 (797)
+.+|++||+|+++||+||||||||||+|+++||||+||+++|+.+++||+||+||||||||+||||+|+|++|+|++ |
T Consensus 621 ~~~i~~arvL~~lgdsiTTDHISPAg~i~~~spAG~yL~~~Gv~~~~fnsyg~rRgN~~vm~rgtF~n~rl~N~l~~~~g 700 (858)
T TIGR02333 621 ERTLKGMRPLAILGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNEMVKNDG 700 (858)
T ss_pred ccCccCcEeeeecCCCccccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHHhhcccccchhhhhhccccC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999997 4
Q ss_pred --CCCCceeccCCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCc
Q 003763 638 --EVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGI 715 (797)
Q Consensus 638 --~~~~~~~~~~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gi 715 (797)
.+|++|.|+|+|+.|+|||+|++|+++|+|+|||+|+|||||||||||||++++|||++|||+||+|||++||+||||
T Consensus 701 ~~~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~nyG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~Nl~~~G~ 780 (858)
T TIGR02333 701 SVKQGSLARIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTNLVGMGV 780 (858)
T ss_pred ccccCceeEecCCCcEeeHHHHHHHHHHcCCeEEEEccCccCCCCcHHHHHHHHHHhCceEEEEccHHHHHHhhhhhcCc
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceecCCcchhhcccCCCCeEEEEeCCCCcccCCCCcEEEEE--cCCC--eEEEEEecCCCHHHHHHHHhcCHHHHHHHH
Q 003763 716 IPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV--TDSG--KSFTCVIRFDTEVELAYFDHGGILQYVIRN 791 (797)
Q Consensus 716 lpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~--~~~g--~~~~~~~~~~~~~e~~i~~aGGll~~v~~~ 791 (797)
|||+|.+++++++|++++.|.++|. . +++||+++++. ..+| .+|.+.+++|++.|++|+++||+|||++++
T Consensus 781 lpl~f~~~~~~~~l~l~g~e~~~i~--~---~~~p~~~~~v~~~~~~g~~~~~~~~~r~dt~~ei~y~~~GgiL~~v~~~ 855 (858)
T TIGR02333 781 LPLEFKPGTNRHTLGLDGTETFDVV--G---EITPRADLTLVVTRKNGEKLEVPVTCRLDTAEEVSVYEAGGVLQRFAQD 855 (858)
T ss_pred ceEEeCCCCChhhcCCCCCeeEEec--c---CCCCCCeEEEEEEeCCCCEEEEEEEEEcCCHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999998873 2 47899988765 3677 678888899999999999999999999999
Q ss_pred Hhh
Q 003763 792 LIN 794 (797)
Q Consensus 792 ~~~ 794 (797)
+++
T Consensus 856 ~~~ 858 (858)
T TIGR02333 856 FLE 858 (858)
T ss_pred hhC
Confidence 863
No 8
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=7.3e-222 Score=1884.09 Aligned_cols=763 Identities=61% Similarity=1.038 Sum_probs=730.2
Q ss_pred ChHHHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceecc
Q 003763 1 MRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQ 80 (797)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (797)
|||+++++|+||.++||.+|++|+|||+++++.++.++|+++|+.+||+||.|||+||+|++++|+|++|+|||+|||||
T Consensus 95 mr~a~~~~g~dp~~inP~~pvdLviDHsv~vd~~g~~~a~~~n~~~e~~rN~ery~FL~w~~kaf~n~~vvPPGtGIiHQ 174 (861)
T COG1048 95 MRDAMVELGGDPAKINPVVPVDLVIDHSVQVDVGGDPDAFEKNVELEFERNGERYKFLKWAAKAFYNFRVVPPGTGIIHQ 174 (861)
T ss_pred HHHHHHHhcCChhhcCCCCcceeeecceeeeecCCChhhhhhhhhhHhhhhhHHHHHHHHHHHhcCCcEEECCCCceeee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeecCCCcccCCeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhh
Q 003763 81 VNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATD 160 (797)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakD 160 (797)
||+||||++|+..+|++||+|+|||||||||+||||+|||||||+|++++|+|||+||++|+||+|+|+|+|++||||||
T Consensus 175 VnLE~la~vv~~~~g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~~~~iP~VvGVkLtGkl~~gvTatD 254 (861)
T COG1048 175 VNLEYLAKVVWAKPGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGVKLTGKLPEGVTATD 254 (861)
T ss_pred ehHhhhccceeccCcccccCceeeccCCCCCcCcceEEEeccchHHHHHHHcCCceEeeCCcEEEEEEeccCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHH
Q 003763 161 LVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRA 240 (797)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~~ 240 (797)
|||+|+++||++|++|||||||||||++||+++|+|||||++||||||||||.|++|++||+.|||.+++++++++|+++
T Consensus 255 lvL~vt~~Lr~~gvVgkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~tl~YL~~tgR~~~~i~lve~y~~~ 334 (861)
T COG1048 255 LVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGRSEEQVALVEAYAKA 334 (861)
T ss_pred HHHHHHHHHHhcCccceEEEEECCchhhCCcccceeeeccccccccccccCCCCHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccCC
Q 003763 241 NKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHG 320 (797)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (797)
|+||.+. +|++|+|+++++||||+|+|+||+|++||+++++++++.+|.+.+.+.... ..+...|
T Consensus 335 ~~l~~~~--~~~~a~Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~~-------------~~~~~~~ 399 (861)
T COG1048 335 QGLWYDP--ADKDAEYDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEIK-------------RVYSLLG 399 (861)
T ss_pred hcccCCc--cccCCccceeEEEEhhhCcccccCCCChhhceEHHHHHHHHHHhhhhhhcc-------------ccccccc
Confidence 9999764 678999999999999999999999999999999999999988765432110 1133344
Q ss_pred CcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEe
Q 003763 321 TPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIV 400 (797)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~ 400 (797)
. .+.||+|+||+|||||||||||+|+||++|||+|+++|++++||||++|+|||++|.+||+++||+++|+++||.++
T Consensus 400 ~--~~~~g~V~iaaItSCTNtSnp~v~~aAgllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~~Gl~~~L~~lGf~iv 477 (861)
T COG1048 400 K--ELGDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKAGLLPYLEKLGFNIV 477 (861)
T ss_pred c--cCCCCcEEEEEEeeccCCCCHHHHHHHHHHHhhHHhcccCCCCCeeEeeCCCcHHHHHHHHHcCCHHHHHhcCCEEe
Confidence 4 68899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhcccccccCCCCccccCC
Q 003763 401 GYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGK 480 (797)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i~~d~~~~plg~~~ 480 (797)
++||+||||||++|+++++..|.+++++.++|+|+||||+||+||..+.+|||||++|+||||+|+|++|+++||++.++
T Consensus 478 ~~gCttCIGnsg~L~~~i~~~I~~~~l~~~avlSgNRNFeGRi~p~~k~nyLaSP~LVvAyAlAG~i~~d~~~~~lg~~~ 557 (861)
T COG1048 478 GYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAGTINFDLTTDPLGTDN 557 (861)
T ss_pred ccccccccCCCCCCChhhhhccccCceEEEeeeccCCCCCcCCCChhhcccccCcHHHHHHHHhcccccCcccCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCccccCCCCCccCCCCCCCC
Q 003763 481 DGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGP 560 (797)
Q Consensus 481 ~G~~v~l~diwP~~~ei~~~~~~~~~p~~~~~~y~~~~~~~~~~~~l~~~~~~~~~w~~~st~i~~pp~f~~~~~~~~~~ 560 (797)
+|+++||+||||+.+||.+.+.+.+.+++|.+.|.++++ |+.++.+.+++|.|++.||||+.||||+.+...+.
T Consensus 558 ~g~~v~l~diwP~~~ei~~~v~~~~~~e~f~~~y~~v~~----w~~~~~~~~~~y~w~~~styi~~pP~f~~~~~~~~-- 631 (861)
T COG1048 558 DGKPVYLKDIWPSTEEIAEAVGKAVKPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIRLPPFFDGMGAEPK-- 631 (861)
T ss_pred CCCceeeeccCCCcHHHHHHHhhccChhhhccccccccc----cccccCCCcCcccCCCcCccccCCCcccccccccc--
Confidence 999999999999999999999999999999999999988 99999999999999999999999999998876543
Q ss_pred CCcccceEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCC
Q 003763 561 HGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVG 640 (797)
Q Consensus 561 ~~i~~~~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~ 640 (797)
.|+++|+|+++|||||||||||||+|+++|||++||..+|+.+.+||+||+||||||+|+|++|+|+|++|++.++ +|
T Consensus 632 -~~~~~r~L~~~gD~iTTDHISPAg~i~~~spag~yl~~~gv~~~dfNsygsrrgnhevm~r~tfaNir~~n~~~~~-~g 709 (861)
T COG1048 632 -PIKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTFANIRIRNEMVPG-EG 709 (861)
T ss_pred -ccccceeeeeecCccccCcccCCCCCCCCCccchhhhhcCCCcccccchhcccccHHHhhhhhhcccccccccccc-cC
Confidence 3999999999999999999999999999999999999999999999999999999999999999999999999988 99
Q ss_pred CceeccCCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceec
Q 003763 641 PKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 720 (797)
Q Consensus 641 ~~~~~~~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~ 720 (797)
++|+|+|+|+ |||+|++|++.++++|||||+|||+||||||||+++++|||+||||+||+||||+||||||||||+|
T Consensus 710 g~t~~~p~g~---iydaa~~yk~~g~p~vvvaG~~YG~GSSRdwAAkg~~lLGv~AVIAeSFeRIHrSNLi~mGvLPLqf 786 (861)
T COG1048 710 GYTIHQPSGE---IYDAAMKYKEEGIPLVVVAGKNYGTGSSRDWAAKGPRLLGVKAVIAESFERIHRSNLIGMGVLPLQF 786 (861)
T ss_pred cceeecCCch---hHHHHHHHHHcCCCeEEEeeccCCCCchHHHHhhCchhcCeeeeeehhHHHHHHhhcccceeeeeec
Confidence 9999999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhcccCCCCeEEEEeCCCCcccCCCCcEEEEE--cCCC--eEEEEEecCCCHHHHHHHHhcCHHHHHHHHHhh
Q 003763 721 KPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV--TDSG--KSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 794 (797)
Q Consensus 721 ~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~--~~~g--~~~~~~~~~~~~~e~~i~~aGGll~~v~~~~~~ 794 (797)
+++++++++++++.+.+.|.+.+ .+.|+.+++++ ..|| .++...++++++.|++|+++||+|+|+++++++
T Consensus 787 ~~~~~~~~l~l~g~e~~~i~~~~---~~~p~~~~~v~~~~~dg~~~~~~~~~r~dt~~E~~y~k~GGiL~~v~~~~~~ 861 (861)
T COG1048 787 PNGETYDKLGLDGEETIDIGGLE---NLKPGATVTVTVTRGDGPVEEFPVLCRIDTAEEIEYYKAGGILNYVKRDLLK 861 (861)
T ss_pred cCCCChhhcCCCCceeEeecccc---cCCCCceEEEEEEcCCCceEEEeeeeecCCHHHHHHHHcCchHHHHHHHhhC
Confidence 99999999999998888877664 57788877664 4566 568888899999999999999999999998763
No 9
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=7.5e-167 Score=1450.90 Aligned_cols=656 Identities=29% Similarity=0.454 Sum_probs=555.5
Q ss_pred HHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceecccccc
Q 003763 5 MNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLE 84 (797)
Q Consensus 5 ~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~~E 84 (797)
|+++|.+ +.++| +++++||++|++.... .++..++.||.|+|+|++|.+++| |++|+|||+||||||++|
T Consensus 73 f~~~g~~-~v~~P---~~v~~DH~~~~~~~~~-----~~~~~a~~~N~e~~~~lr~~a~~~-gi~~~~~g~GI~Hqv~~E 142 (745)
T TIGR01340 73 FMTCGLP-QVAVP---ASIHCDHLIVGQKGGD-----KDLARAIATNKEVFDFLESAGKKY-GIGFWKPGSGIIHQIVLE 142 (745)
T ss_pred HHHcCCC-CCCCC---CeEEeCCCCccccCcc-----ccHHHHhHhHHHHHHHHHHHHHHC-CCEEECCCCCeeceEchh
Confidence 4555653 44555 6789999999765432 467888999999999999999999 899999999999999999
Q ss_pred cccceeecCCCcccCC-eEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhhHHH
Q 003763 85 YLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVL 163 (797)
Q Consensus 85 ~~a~~v~~~~G~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakDviL 163 (797)
+ +++|+ ++|||||||||+||||+||||||++|++++|+|++|||++||+|+|+|+|+|++|||||||||
T Consensus 143 ~----------~a~PG~~ivGtDSHT~t~GalG~la~GvG~td~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDviL 212 (745)
T TIGR01340 143 N----------YAFPGLMMLGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIIL 212 (745)
T ss_pred h----------ccCCCCeEEccCCCcccccchheeEeccCHHHHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHHH
Confidence 5 45775 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHH-HHHHHHHHhh
Q 003763 164 TVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVS-MIESYLRANK 242 (797)
Q Consensus 164 ~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~-~~~~y~~~~~ 242 (797)
+|+++|+++|++||+|||+||||++||+++|||||||++|+|||+||||+|++|++||+.+||+++... .++.|. ..
T Consensus 213 ~ii~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~Ti~NMa~E~GA~~gifp~De~T~~yL~~~gr~~~~~~~~~~~~~--~~ 290 (745)
T TIGR01340 213 KLAGLLTVRGGTGYIVEYFGPGVESLSCTGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIAEDAKTGQYS--FF 290 (745)
T ss_pred HHHHHhCcCCccceEEEEeCcccccCCHHHhhhhhhcccccCceeEEeCCChHHHHHHHhcCCchhhhHHHHHHHh--cc
Confidence 999999999999999999999999999999999999999999999999999999999999999875322 222221 12
Q ss_pred hhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccCCCc
Q 003763 243 MFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTP 322 (797)
Q Consensus 243 l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 322 (797)
+| .+|++|.|+++++||||+|||+||+|++|||++||+|+++++.+ .|++
T Consensus 291 ~~----~~D~~a~Y~~~i~iDls~leP~vA~P~~Pdn~~~v~e~~~~~~~--------------------------~g~~ 340 (745)
T TIGR01340 291 KL----KADEGAQYDELIEIDLSKLEPHINGPFTPDLSTPISKFKETVQK--------------------------NGWP 340 (745)
T ss_pred cc----cCCCCCCeEEEEEEEccceeEeecCCCChhcccChHHhCchhhh--------------------------cCCC
Confidence 22 57999999999999999999999999999999999999875432 1221
Q ss_pred ccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEecc
Q 003763 323 AQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGY 402 (797)
Q Consensus 323 ~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~ 402 (797)
.+|+|||||||||||++||+.||.+| |+|+ |++++++|+++|+|||++|+++|+++|++++|+++||.|.+|
T Consensus 341 -----~~Id~a~IGSCTNgr~~Dl~~AA~il-k~a~--~~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~v~~~ 412 (745)
T TIGR01340 341 -----EKLSAGLIGSCTNSSYEDMSRCASIV-KDAE--QAGLKPKSPFYVTPGSEQIRATLERDGILQTFEKFGGIVLAN 412 (745)
T ss_pred -----ceecEEEEEcCCCCCHHHHHHHHHHh-hhhh--hCCCCCCCCEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeCC
Confidence 24789999999999999977776655 5555 466788899999999999999999999999999999999999
Q ss_pred CCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCC-CCccCCceecChHHHHHHhhcccccccCCCCccccCCC
Q 003763 403 GCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRV-HPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKD 481 (797)
Q Consensus 403 gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~-g~~~~~~yLaSP~~vaAsAiaG~i~~d~~~~plg~~~~ 481 (797)
|||+|+|+++.+. .+.+|+.+ ++|||+||||+||| |...+.+|||||+|||||||+|+|++|+++||+ .+++
T Consensus 413 gCg~CiG~~~~~~-----~~~~ge~~-~~vst~NRNF~GR~~g~~~~~~yLaSP~~vaAsAlaG~i~~d~~~dpl-~~~~ 485 (745)
T TIGR01340 413 ACGPCIGQWDRKD-----DVKKGEPN-TILTSYNRNFRGRNDGNPATMNFLASPEIVTAMSYAGSLTFNPLTDSL-TTPD 485 (745)
T ss_pred CccccccCCCCcC-----ccCCCCce-EEEEecCCCCCcCCCCCCCceEEECCHHHHHHHHhhceeecCcccCcc-cCCC
Confidence 9999999986432 13456653 57999999999999 445678999999999999999999999999999 6999
Q ss_pred CceeccccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCC--CCCccccCCCCccccCCCCCccCCCCCCC
Q 003763 482 GKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVP--SGTLYAWDPKSTYIHEPPYFKDMTMSPPG 559 (797)
Q Consensus 482 G~~v~l~diwP~~~ei~~~~~~~~~p~~~~~~y~~~~~~~~~~~~l~~~--~~~~~~w~~~st~i~~pp~f~~~~~~~~~ 559 (797)
|++|||+ ||+.+|+++. +| ..++..|+.+..+ .+..|+|+++||||++||+|++ ++
T Consensus 486 g~~v~l~--~p~~~e~~~~--------~~-------~~~~~~~~~~~~~~~~~~~~~~~p~s~~i~~~~~f~~-----~~ 543 (745)
T TIGR01340 486 GKEFKFP--APKGDELPEK--------GF-------EAGRDTFQAPPGSPNPNVEVAVSPSSDRLQLLEPFEP-----WN 543 (745)
T ss_pred CCEeecC--CCCccccchh--------cc-------cCCccceeCCCCCCCCCceEEeCCCCCCCCCCCCCCC-----CC
Confidence 9999998 7999998764 12 1235567665443 5678999999999999999964 35
Q ss_pred CCCcccceEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcC--C
Q 003763 560 PHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLN--G 637 (797)
Q Consensus 560 ~~~i~~~~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~--~ 637 (797)
..++++++||+++||||||||||||| .||++|| +|.|++ .|.|.. +
T Consensus 544 ~~~i~~a~vLlk~gd~iTTDHIsPAG---------~~L~~rg----------------------~~~~i~-~n~~~~~~n 591 (745)
T TIGR01340 544 GKDLSGLRVLIKVTGKCTTDHISAAG---------PWLKYKG----------------------HLDNIS-NNTLIGAVN 591 (745)
T ss_pred cCCccCCeEEEEECCCcChhcccccc---------hhHhhcC----------------------Chhhhh-cceeccccc
Confidence 57899999999999999999999997 4999754 444444 344331 1
Q ss_pred CCCC--ceeccCCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCc
Q 003763 638 EVGP--KTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGI 715 (797)
Q Consensus 638 ~~~~--~~~~~~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gi 715 (797)
.+++ .+.+.|+|+.++++++|++|++.++++|||||+||||||||||||+++++|||+||||+||+||||+||||+||
T Consensus 592 ~~~~~~~~~~~~~g~~~~~~~~a~~~~~~~~~~iivaG~nyG~GSSRE~Aa~~~~~lGv~aVIA~SFaRI~~~Nlin~Gi 671 (745)
T TIGR01340 592 AETGEVNKAYDLDGSKGTIPELARDWKARGQPWVVVAEHNYGEGSAREHAALEPRHLGGRIIITKSFARIHETNLKKQGV 671 (745)
T ss_pred ccCCceeEEEcCCCCccchHHHHHHHHhCCccEEEEccccccCCCchHHHHHHHHHhCCcEEEEehHHHHHHhhhhhcCc
Confidence 1222 45667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceecCCcchhhcccCCCCeEEEEe-CCCCcccCCC---CcEEEE--EcCCC--eEEEEEecCCCHHHHHHHHhcCHHHH
Q 003763 716 IPLCFKPGEDAETHGLTGHERYTID-LPSSVSEIRP---GQDVRV--VTDSG--KSFTCVIRFDTEVELAYFDHGGILQY 787 (797)
Q Consensus 716 lpl~~~~~~~~~~l~~~~~~~~~id-l~~~~~~~~~---g~~v~v--~~~~g--~~~~~~~~~~~~~e~~i~~aGGll~~ 787 (797)
|||+|.++++++.+. .++++.+. +. ++.| ++.+++ +..+| .+|.+.+++ |+.|++|+++||+|||
T Consensus 672 lpl~~~~~~~~~~i~--~gd~~~~~~l~----~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l-t~~E~~~~~aGGiLny 744 (745)
T TIGR01340 672 LPLTFANEADYDKIQ--PGDEVATLNLY----EMLKNGGGGEVDLRVTKKNGKVFEIKLKHTV-SKDQIGFFKAGSALNL 744 (745)
T ss_pred eeEEecCCccHhhcC--CCCEEEEcChh----hccccCCCCeEEEEEEeCCCcEEEEEEEeeC-CHHHHHHHHcCCcccC
Confidence 999999888888764 45666553 33 3343 556664 33455 677777777 9999999999999998
Q ss_pred H
Q 003763 788 V 788 (797)
Q Consensus 788 v 788 (797)
+
T Consensus 745 ~ 745 (745)
T TIGR01340 745 M 745 (745)
T ss_pred C
Confidence 5
No 10
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=2.1e-155 Score=1348.64 Aligned_cols=600 Identities=34% Similarity=0.528 Sum_probs=521.0
Q ss_pred HHHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceecccc
Q 003763 3 DAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVN 82 (797)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~ 82 (797)
..|+++|.++ .++|.. + +++||.+|.. +.+|.++|+|++|++++| |++|+|||+|||||++
T Consensus 44 ~~~~~~G~~~-~~~p~~-~-~~~DH~~~~~---------------~~~~~~~~~~l~~~a~~~-gi~~~~~g~GI~Hqv~ 104 (646)
T PRK07229 44 LQFEAMGLDR-VKTELS-V-QYVDHNLLQA---------------DFENADDHRFLQSVAAKY-GIYFSKPGNGICHQVH 104 (646)
T ss_pred HHHHHcCCCc-CCCCCe-E-EECCCCCCCC---------------ChhhHHHHHHHHHHHHHh-CCeEECCCCCCcceeh
Confidence 3567788865 466643 3 5899988774 378899999999999999 8999999999999999
Q ss_pred cccccceeecCCCcccCCeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhhHH
Q 003763 83 LEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLV 162 (797)
Q Consensus 83 ~E~~a~~v~~~~G~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakDvi 162 (797)
+|+|++ +| +++|||||||||+||||+||||||++|++++|+|+++||++||||+|+|+|+|++||++||||
T Consensus 105 ~E~~a~-----PG----~~ivGtDSHT~~~GalG~la~GvG~~d~~~~m~~g~~~~~vPe~v~V~l~G~l~~gV~akDvi 175 (646)
T PRK07229 105 LERFAF-----PG----KTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGGPYYLKMPKVVGVKLTGKLPPWVSAKDVI 175 (646)
T ss_pred hhhccC-----CC----CEEEeCCCCcCcCCcccccEEccCHHHHHHHHhcCcEEccCCCEEEEEEEccCCCCcCHHHHH
Confidence 996664 33 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHhh
Q 003763 163 LTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANK 242 (797)
Q Consensus 163 L~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~~~~ 242 (797)
|+|+++|+.+|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.+||.+++..
T Consensus 176 L~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~Ti~NM~~E~GA~~~if~~D~~t~~yL~~~gr~~~~~~---------- 245 (646)
T PRK07229 176 LELLRRLTVKGGVGKIIEYFGPGVATLSVPERATITNMGAELGATTSIFPSDERTREFLKAQGREDDWVE---------- 245 (646)
T ss_pred HHHHHHhCccCccceEEEEECcccccccHHHHhhhhccccccCceEEEecCcHHHHHHHHhcCCccccee----------
Confidence 9999999999999999999999999999999999999999999999999999999999999998765321
Q ss_pred hhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccCCCc
Q 003763 243 MFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTP 322 (797)
Q Consensus 243 l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 322 (797)
+ .+|++|.|+++++||||+|||+||+|++|||++||+|+++
T Consensus 246 -l----~~D~~a~Y~~~i~iDLs~leP~va~P~~Pd~~~pv~e~~~---------------------------------- 286 (646)
T PRK07229 246 -L----LADPDAEYDEVIEIDLSELEPLIAGPHSPDNVVPVSEVAG---------------------------------- 286 (646)
T ss_pred -c----cCCCCCCeeEEEEEEccceeeeeecCCCccceeEhHHhCC----------------------------------
Confidence 1 4799999999999999999999999999999999999863
Q ss_pred ccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEecc
Q 003763 323 AQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGY 402 (797)
Q Consensus 323 ~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~ 402 (797)
-+|++||||||||||+|||++||++| +|+||+++||++|+|||++|+++|+++|++++|+++||.|.+|
T Consensus 287 -----~~I~~a~IGSCTN~~~~Dl~~aA~iL------~G~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~ 355 (646)
T PRK07229 287 -----IKVDQVLIGSCTNSSYEDLMRAASIL------KGKKVHPKVSLVINPGSRQVLEMLARDGALADLIAAGARILEN 355 (646)
T ss_pred -----CeEEEEEEecCCCCChHHHHHHHHHh------cCCCCCCCeeEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEeCC
Confidence 13789999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhcccccccCCCCccccCCCC
Q 003763 403 GCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDG 482 (797)
Q Consensus 403 gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i~~d~~~~plg~~~~G 482 (797)
|||+|+|+++. +. ++++ +|||+||||+||||+..+.+|||||++||||||+|+|+ |+.++|++. |
T Consensus 356 gCg~CiG~g~~-~~-------~~~~---~vst~NRNF~GR~G~~~~~~yLaSP~~vaAsA~~G~i~-dp~~~~~~~---g 420 (646)
T PRK07229 356 ACGPCIGMGQA-PA-------TGNV---SLRTFNRNFPGRSGTKDAQVYLASPETAAASALTGVIT-DPRTLALEN---G 420 (646)
T ss_pred CccccccCCCC-CC-------CCcE---EEEccCCCCCccCCCCCCeEEECCHHHHHHHHhcCccC-Chhhccccc---C
Confidence 99999998543 22 3554 79999999999999988899999999999999999999 999999876 8
Q ss_pred ceeccccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCccccCCCCCccCCCCCCCCCC
Q 003763 483 KKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHG 562 (797)
Q Consensus 483 ~~v~l~diwP~~~ei~~~~~~~~~p~~~~~~y~~~~~~~~~~~~l~~~~~~~~~w~~~st~i~~pp~f~~~~~~~~~~~~ 562 (797)
++++|+ ||+. +.++..+|.. .+..|+.+++. .++|++++|+|+++ .+
T Consensus 421 ~~~~~~--~p~~--------~~~~~~~~~~-------~~~~~~~~~~~---------~~p~~~~~~~~~~~-------~~ 467 (646)
T PRK07229 421 EYPKLE--EPEG--------FAVDDAGIIA-------PAEDGSDVEVV---------RGPNIKPLPLLEPL-------PD 467 (646)
T ss_pred Ccceec--CCcc--------ccCChhhhcC-------CCccccccccc---------CCCCCCCCccCCCC-------Cc
Confidence 899996 7772 1233334321 23456655554 45788888887654 47
Q ss_pred cccceEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCc
Q 003763 563 VKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPK 642 (797)
Q Consensus 563 i~~~~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~~~ 642 (797)
+.++++|+++|||||||||||+|+ +||++ |+|++.|.+++|.+.+ |.
T Consensus 468 ~~~~~vl~~~gd~i~TD~I~Pa~~--------~~l~~--------------r~~~~~l~~~~f~~~~--~~--------- 514 (646)
T PRK07229 468 LLEGKVLLKVGDNITTDHIMPAGA--------KWLPY--------------RSNIPNISEFVFEGVD--NT--------- 514 (646)
T ss_pred CceEEEEEEcCCCCChhccCcCCc--------chhcc--------------CCCHHHHHHHHhccCC--hh---------
Confidence 899999999999999999999863 48764 6799999999998642 22
Q ss_pred eeccCCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceecCC
Q 003763 643 TIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 722 (797)
Q Consensus 643 ~~~~~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~ 722 (797)
.+.+++..+ ++|||||+|||||||||||||+++++||+||||+||+|||||||+|+|||||+|.+
T Consensus 515 --------------f~~~~~~~~-~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~~ 579 (646)
T PRK07229 515 --------------FPERAKEQG-GGIVVGGENYGQGSSREHAALAPRYLGVKAVLAKSFARIHKANLINFGILPLTFAD 579 (646)
T ss_pred --------------hhHHHHhcC-CcEEEecCccCCCCchHHHHHHHHHHCCCEEEEeCHHHHHHhhHHhcCCceEEecC
Confidence 123455544 78999999999999999999999999999999999999999999999999999988
Q ss_pred cchhhcccCCCCeEEEE-eCCCCcccCCCCcEEEEEc-CCCeEEEEEecCCCHHHHHHHHhcCHHHHHHHHHh
Q 003763 723 GEDAETHGLTGHERYTI-DLPSSVSEIRPGQDVRVVT-DSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 793 (797)
Q Consensus 723 ~~~~~~l~~~~~~~~~i-dl~~~~~~~~~g~~v~v~~-~~g~~~~~~~~~~~~~e~~i~~aGGll~~v~~~~~ 793 (797)
+++++.+ ..+|.++| ++.+ +.++.+|+++. .+|++|.++.++ ++.|++|+++||+|||+++++.
T Consensus 580 ~~~~~~l--~~gd~i~i~dl~~----~~~~~~v~v~~~~~~~~~~~~~~l-~~~e~~i~~aGGll~~~~~~~~ 645 (646)
T PRK07229 580 PADYDKI--EEGDVLEIEDLRE----FLPGGPLTVVNVTKDEEIEVRHTL-SERQIEILLAGGALNLIKKKLA 645 (646)
T ss_pred hHhHhhc--CCCCEEEEccchh----cCCCCeEEEEEecCCEEEEEEccC-CHHHHHHHHcCCHHHHHHHhcc
Confidence 8888764 45788998 6653 45666655543 456888887777 8999999999999999999864
No 11
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=2.7e-154 Score=1336.65 Aligned_cols=606 Identities=32% Similarity=0.497 Sum_probs=514.5
Q ss_pred HHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceeccccc
Q 003763 4 AMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNL 83 (797)
Q Consensus 4 ~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~~ 83 (797)
.|+++|.+ ++.|.+ +.+++||++|+.+ .+|.++|+|++|.+++| ++.|++||+||||||++
T Consensus 42 ~~~~~g~~--~v~~~~-~~~~~DH~~~~~d---------------~~~a~~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~ 102 (658)
T TIGR01342 42 EFEALEMD--EVKTEL-AAQYCDHNMLQFD---------------FKNADDHKFLMSAAGKF-GAWFSKPGNGICHNVHK 102 (658)
T ss_pred HHHHcCCC--ccCCCC-eEEECCCCCCCCC---------------hhhHHHHHHHHHHHHHh-CCeEECCCCCEEeeEch
Confidence 45666664 345664 8899999998842 26778999999999998 57899999999999999
Q ss_pred ccccceeecCCCcccCCeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhhHHH
Q 003763 84 EYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVL 163 (797)
Q Consensus 84 E~~a~~v~~~~G~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakDviL 163 (797)
|+|++ +| +++|||||||||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||++|||||
T Consensus 103 E~~a~-----PG----~~ivGtDSHT~t~GalG~la~GvG~td~a~~matg~~~~~vPe~i~V~l~G~l~~gV~aKDviL 173 (658)
T TIGR01342 103 ENFAA-----PG----KTLLGSDSHTPTAGGLGMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIIL 173 (658)
T ss_pred hhccC-----CC----CEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCcEEccCCcEEEEEEecccCCCcCHHHHHH
Confidence 96654 33 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHhhh
Q 003763 164 TVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKM 243 (797)
Q Consensus 164 ~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~~~~l 243 (797)
+|+++|+.+|++||+|||+||||++||+++|||||||++|+|||+||||+|++|++||+.++|.+++..
T Consensus 174 ~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~Ti~NM~~E~GA~~~if~~D~~t~~yl~~~~r~~~~~~----------- 242 (658)
T TIGR01342 174 ELLRRLSVKGGLGKIFEYFGEGVEELSVPERATITNMGAELGATSSIFPSDDITEAWLAAFDREDDFVD----------- 242 (658)
T ss_pred HHHHHhcccCcceEEEEEecCCcCccCHHHHhhhhccchhhCceEEEEcCcHHHHHHHHhcCCchheee-----------
Confidence 999999999999999999999999999999999999999999999999999999999999998654321
Q ss_pred hcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccCCCcc
Q 003763 244 FVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPA 323 (797)
Q Consensus 244 ~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 323 (797)
+.+|++|.|+++++||||+|||+||+|++|||++||+|+++ +
T Consensus 243 ----l~~D~~a~Y~~~i~iDls~leP~va~P~~Pd~v~~v~e~~g--------------~-------------------- 284 (658)
T TIGR01342 243 ----LLADADAEYADEIEIDLSDLEPLIAEPHMPDNVVPVREIAG--------------I-------------------- 284 (658)
T ss_pred ----ccCCCCCcEEEEEEEEccceeeeeeCCCCCCCeeEhHHhCC--------------c--------------------
Confidence 15899999999999999999999999999999999999863 1
Q ss_pred cccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccC
Q 003763 324 QLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYG 403 (797)
Q Consensus 324 ~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~g 403 (797)
+|+++|||||||||++||++||++| +|+||+|+||++|+|||++|+++|+++|++++|+++||+|.+||
T Consensus 285 -----~id~v~IGSCTn~~~~Dl~~aA~il------~G~~v~~~v~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~~g 353 (658)
T TIGR01342 285 -----EVDQVMIGSCTNGAFEDLLPAAKLL------EGREVHKDTEFAVAPGSKQALELIAQEGALAEFLAAGANFLEAA 353 (658)
T ss_pred -----eeeeEEEeCCCCCChHHHHHHHHHh------CCCccCCCccEEEeCCcHHHHHHHHHcCcHHHHHHcCCEEeCCC
Confidence 3568999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhcccccccCCCCccccCCCCc
Q 003763 404 CTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGK 483 (797)
Q Consensus 404 Cg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i~~d~~~~plg~~~~G~ 483 (797)
||+|+|+++.+. ++++ +|||+||||+||||+..+.+|||||++||||||+|+| .|+.+ ++ +.+|
T Consensus 354 Cg~CiG~~~~~~--------~~~~---~vst~NRNF~gR~G~~~~~~yLaSP~~vaAsA~~G~i-~dp~~--l~-~~~g- 417 (658)
T TIGR01342 354 CGACIGIGFAPA--------SDGV---SLRSFNRNFEGRAGIEDAKVYLASPETATAAAIAGEI-IDPRD--LA-DDEG- 417 (658)
T ss_pred ccccccCCCCCC--------CCcE---EEEccCCCCCccCCCCCCeEEECCHHHHHHHHHcCCc-CCHHH--hc-cccC-
Confidence 999999965532 2443 7999999999999998888999999999999999999 34432 21 2233
Q ss_pred eeccccC-CCChHHHHHHhhhccCchhhhhhcccccCCCcccccccC---CCCCccccCCCCccccCCCCCccCCCCCCC
Q 003763 484 KIFLRDI-WPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSV---PSGTLYAWDPKSTYIHEPPYFKDMTMSPPG 559 (797)
Q Consensus 484 ~v~l~di-wP~~~ei~~~~~~~~~p~~~~~~y~~~~~~~~~~~~l~~---~~~~~~~w~~~st~i~~pp~f~~~~~~~~~ 559 (797)
|+ ||+.++ |+.|...|... .|+.++. ++.+++ .|+||+++|+|++++
T Consensus 418 -----~~~~p~~~~----------p~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~~p~i~~~p~~~~~~----- 468 (658)
T TIGR01342 418 -----DLEAIGFEM----------GEKFPGGYDAA-----DIDIIPKEEREDDDII----KGPNIKPLPEFDPLG----- 468 (658)
T ss_pred -----cccCCCCCC----------chhhccccccc-----ccccCCCCCCCCccee----eCCCCCCCCCCCCCc-----
Confidence 34 776552 44454444432 2665554 223334 389999999998774
Q ss_pred CCCcccceEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCC
Q 003763 560 PHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEV 639 (797)
Q Consensus 560 ~~~i~~~~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~ 639 (797)
.++++ +++.++|||||||||+|||. .||.+ |+|.+.+.+.+|...+
T Consensus 469 -~~i~g-rv~~~~gDnI~TD~I~Pa~~--------~~l~~--------------r~~~~~l~~~~~~~~~---------- 514 (658)
T TIGR01342 469 -ADIEG-ETALIMEDNITTDHIIPAGA--------DILKF--------------RSNIEAISEFTLHRID---------- 514 (658)
T ss_pred -cccCc-eEEEEcCCCCChhcCCCCCc--------ccccc--------------CCCHHHHhhheeeCCC----------
Confidence 46777 99999999999999999874 25543 6677888888875421
Q ss_pred CCceeccCCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCcccee
Q 003763 640 GPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLC 719 (797)
Q Consensus 640 ~~~~~~~~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~ 719 (797)
.+ +.+++++|++.+.++|||||+|||||||||||||+|++|||+||||+||+|||+|||+|+|||||+
T Consensus 515 ---------p~---f~~~~~~~~~~~~~~iiVaG~nfG~GSSREhAa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~ 582 (658)
T TIGR01342 515 ---------DE---FAERAKAADEKGKAGIIIAGENYGQGSSREHAALAPMFLGVEAVIAKSFARIHHANLFNFGILPLE 582 (658)
T ss_pred ---------ch---HHHHhhcccccCCceEEEcCCcCCCCccHHHHHHHHHHHCCCEEEEecHHHHHHhhhhhcCcceEE
Confidence 11 235778898888899999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhcccCCCCeEEEEe--CCCCcccCCCCcEEEE-EcCCCeEEEEEecCCCHHHHHHHHhcCHHHHHHHHHhh
Q 003763 720 FKPGEDAETHGLTGHERYTID--LPSSVSEIRPGQDVRV-VTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 794 (797)
Q Consensus 720 ~~~~~~~~~l~~~~~~~~~id--l~~~~~~~~~g~~v~v-~~~~g~~~~~~~~~~~~~e~~i~~aGGll~~v~~~~~~ 794 (797)
|+++++++.+. .+++++|+ +.+ .+.+|+...+ +..+|.++.+...+ ++.|++|+++||+|||++++..+
T Consensus 583 ~~d~~~~~~i~--~Gd~l~id~~l~~---~~~~g~~~~i~~~~~g~~~~~~~~l-~~~e~ei~~aGGlln~~~~~~~~ 654 (658)
T TIGR01342 583 FDNEEDYAKFE--LGDDIEIPDDLAA---ALADGEDEFTINKNDDEEALATLDA-SEREKEILAAGGKLNLIKNKHRE 654 (658)
T ss_pred ecChhhHHHhC--CCCEEEECchhhh---hcCCCCceEEEEecCCeEEEEeCCC-CHHHHHHHHcCCHHHHHHHhhcc
Confidence 99888888754 47788887 664 4778864444 33466666665443 89999999999999999998754
No 12
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=6.3e-142 Score=1230.98 Aligned_cols=623 Identities=23% Similarity=0.353 Sum_probs=475.7
Q ss_pred HHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceecccccc
Q 003763 5 MNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLE 84 (797)
Q Consensus 5 ~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~~E 84 (797)
+.++|.+ ++++|.+ +.+++||.+|+.+.. .+..++.+++|+| +| +++|+|||+|||||+++|
T Consensus 48 ~~~~g~~-~V~~p~~-~v~~~DH~v~~~~~~--~~~~~~~l~~fAk-------------k~-Gi~f~~~g~GI~Hqv~~E 109 (712)
T TIGR00139 48 FMGIGAS-KIHNPDQ-IVMTLDHDIQNKSDK--NLKKYKNIEEFAK-------------KH-GIDFYPAGRGIGHQIMIE 109 (712)
T ss_pred HHHcCCC-ccCCCCC-EEEEcCCCCCCCCHH--HHHHHHHHHHHHH-------------Hh-CCeEECCCCCeEeEeecc
Confidence 3457764 6789986 889999999997532 3334555555555 34 588999999999999999
Q ss_pred cccceeecCCCcccCC-eEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhhHHH
Q 003763 85 YLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVL 163 (797)
Q Consensus 85 ~~a~~v~~~~G~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakDviL 163 (797)
+|+++|+ ++|||||||||+||||+||||||++|++++|+||++||+|||+|+|+|+|+|++||++|||||
T Consensus 110 ---------~g~a~PG~~ivGsDSHT~t~GalGala~GvG~tDva~amatg~~w~~vPe~v~V~ltG~L~~gV~aKDviL 180 (712)
T TIGR00139 110 ---------EGFAFPGNLAVASDSHSNMYGGLGCLGTPIVRTDAAAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIV 180 (712)
T ss_pred ---------cCcccCCeEEEccCcCcCccchhhheeeccchHHHHHHHhhCCEeccCCCEEEEEEecccCCCCCHHHHHH
Confidence 8899996 679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccceEEEEec--CcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCch--------hHHH
Q 003763 164 TVTQMLRKHGVVGMFVEFYG--EGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDD--------TVSM 233 (797)
Q Consensus 164 ~i~~~l~~~G~~g~~vEf~G--~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~--------~~~~ 233 (797)
+|+++|+.+|++||+|||+| |||++||+++|+|||||++|+||++++||+|++|++||+.++|... ..+.
T Consensus 181 ~l~~~l~~~g~~g~~iEf~G~~~gv~~Ls~~~R~TI~NM~~E~GA~tgifp~De~t~~yL~~~~~~~~~~~~~~~~~~~~ 260 (712)
T TIGR00139 181 ALCGLFNKDDVLNHAIEFTGSEDSLNALPIDHRLTIANMTTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPA 260 (712)
T ss_pred HHHHHhccCCcceEEEEEecCcchhhcCCHHHHhhHhhhhHhhCceeeEecCChHHHHHHHhcCcccccccccccccchh
Confidence 99999999999999999999 9999999999999999999999999999999999999999875311 0011
Q ss_pred HHHHHH---HhhhhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccc
Q 003763 234 IESYLR---ANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQ 310 (797)
Q Consensus 234 ~~~y~~---~~~l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~ 310 (797)
.++|.+ +...| .++.+|++|.|+++++||||+|+|+||+|++|+|++||+++... +
T Consensus 261 ~~r~~~~~~~~~~~-~~l~aD~~A~Y~~~~~iDLs~leP~vA~P~~p~~~~~v~el~~~------------~-------- 319 (712)
T TIGR00139 261 AERFTHPALEEKAE-IPLKADKDAHYAKELFIDLASLSHYVSGPNSVKVANPLKDLEAQ------------D-------- 319 (712)
T ss_pred HHHHHHHHHHHHhh-ccCCCCCCCCEEEEEEEEcccceeeeeCCCCCCCcCcHHHhhhc------------C--------
Confidence 122211 01112 23368999999999999999999999999999999999987420 1
Q ss_pred cccceeccCCCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCC---CccCCceeEEEecCCHHHHHHHHHcC
Q 003763 311 SKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELG---LEVKPWIKTSLAPGSGVVTKYLQNSG 387 (797)
Q Consensus 311 ~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G---~kv~~~V~~~v~PgS~~V~~~l~~~G 387 (797)
-+|++||||||||+|++||+.||.+|+++|+++| +||+|+|+++|+|||++|+++|+++|
T Consensus 320 -----------------~~Id~~~IGSCTN~r~~Dl~~AA~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~G 382 (712)
T TIGR00139 320 -----------------IKIDKAYLVSCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGNG 382 (712)
T ss_pred -----------------ceeeeEEEecCCCCCcHHHHHHHHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHCC
Confidence 1367999999999999999999999988888763 89999999999999999999999999
Q ss_pred cHHHHHhcCcEEeccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhcccc
Q 003763 388 LQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 467 (797)
Q Consensus 388 l~~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i 467 (797)
++++|++|||.|.+||||+|+|+++++.++ +++ +|||+||||+||||++.+.+|||||+|||||||+|+|
T Consensus 383 l~~~l~~AGa~i~~~gCg~CiG~~~~~~~~-------gev---~isT~NRNF~GRmG~~~a~~YLaSP~~vAAsAl~G~I 452 (712)
T TIGR00139 383 AWEKLLEAGAIPLPAGCGPCIGLGAGLLEP-------GEV---GISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKI 452 (712)
T ss_pred cHHHHHHcCCEEcCCccccccCcCCCCCCC-------CCE---EEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhcCcc
Confidence 999999999999999999999999887544 554 7899999999999998889999999999999999999
Q ss_pred cccCCCCccccCCCCceeccccCCCCh--H---HHHHHhhhccCchhhhhhcccc---cCCCcccccccCCCCCccccCC
Q 003763 468 NIDFETEPVGVGKDGKKIFLRDIWPSS--E---EVAHVVQKSVLPDMFKATYEAI---TKGNPMWNQLSVPSGTLYAWDP 539 (797)
Q Consensus 468 ~~d~~~~plg~~~~G~~v~l~diwP~~--~---ei~~~~~~~~~p~~~~~~y~~~---~~~~~~~~~l~~~~~~~~~w~~ 539 (797)
+ ||..+.. + .-||.. . .+.......++.+++...-..+ ....+.-.+.+.+
T Consensus 453 t-----dPr~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 511 (712)
T TIGR00139 453 S-----GPAEVLS---P----EGWTEIIFGEGDGIKEEDRMLTNEEALEKIIGIIDDLVADEEKNAASEAP--------- 511 (712)
T ss_pred C-----CHHHHhc---c----cccccccccccccccCcccccCcHHHHhhhhhhccCccccchhccccccc---------
Confidence 4 5543210 0 002210 0 0000000111222221100000 0000000001001
Q ss_pred CCcccc--CCCCCccCCCCCCCCCCcccceEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCch
Q 003763 540 KSTYIH--EPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGND 617 (797)
Q Consensus 540 ~st~i~--~pp~f~~~~~~~~~~~~i~~~~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~ 617 (797)
++..+. ..|.++++ +.. ...+++++.|||||||||+| ++||....++ .
T Consensus 512 ~~~~~~~~~~~~~~~~------~~~-i~g~v~~~~gdnI~TD~I~P----------~~~~~~~~~~-------------~ 561 (712)
T TIGR00139 512 AQEESEQGLTEILEGF------PEE-FSGELVFCDADNINTDGIYP----------GKYTYQDDVP-------------K 561 (712)
T ss_pred ccchhccCCCCcCCCC------Cce-EEEEEEEcCCCCCchhhccc----------hhhcccCCCC-------------H
Confidence 111111 12222222 233 44589999999999999999 5788432222 2
Q ss_pred hhhccccccchhhhhhhcCCCCCCceeccCCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEE
Q 003763 618 EIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAV 697 (797)
Q Consensus 618 evm~rg~F~n~r~~n~~~~~~~~~~~~~~~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aV 697 (797)
+.|.+..|.+.+ | +++.+++. +.|||+|+|||||||||||+|+|+++||+||
T Consensus 562 ~~l~~~~~~~~d-----------------p--------~f~~~~~~---g~iiVaG~NfG~GSSREhA~~al~~~Gi~~V 613 (712)
T TIGR00139 562 EKMAQVCMENYD-----------------A--------EFRTKAHE---GDILVSGFNFGCGSSREQAATAILAKGINLV 613 (712)
T ss_pred HHHHHhhccCCC-----------------c--------chhhcCCC---CCEEEeCCccCCCCcHHHHHHHHHHcCCcEE
Confidence 355666776532 1 12334443 4799999999999999999999999999999
Q ss_pred EecchhhHhhhhcccCCccceecCCcchhhccc---------C--CCCeEEEEeCCCCcccCCCCcEEEEEcCC----Ce
Q 003763 698 IAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG---------L--TGHERYTIDLPSSVSEIRPGQDVRVVTDS----GK 762 (797)
Q Consensus 698 IA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~---------~--~~~~~~~idl~~~~~~~~~g~~v~v~~~~----g~ 762 (797)
||+||+|||+||+||+|||||+|++. .+.+. + ..|++++||+..+ .|++ ..+ ++
T Consensus 614 iA~SFarIf~rN~iN~Gl~~l~~~~~--~~~l~~~~~~~~~~~~~~~Gd~l~vD~~~g--------~i~~-t~g~~~~~~ 682 (712)
T TIGR00139 614 VSGSFGNIFSRNSINNALLGLEIPAL--IKKLREKFGGADKELTRRTGWFLKWDVADA--------KIEV-QEGSLDGGP 682 (712)
T ss_pred EEchHHHHHHhHHHhcCCceEEchhH--HHHHHhhhcccccccccCCCCEEEEEccCC--------EEEE-CCCcccccc
Confidence 99999999999999999999999852 22221 1 2578899998863 3444 222 23
Q ss_pred EEEEEecCCCHHHHHHHHhcCHHHHHHHHH
Q 003763 763 SFTCVIRFDTEVELAYFDHGGILQYVIRNL 792 (797)
Q Consensus 763 ~~~~~~~~~~~~e~~i~~aGGll~~v~~~~ 792 (797)
++.+++...++..++|+++|||++|+|+++
T Consensus 683 ~~~~~~~~~p~~~~eii~~GGl~~~~k~~~ 712 (712)
T TIGR00139 683 ILEHKVGELGKNLQEIIAKGGLEGWVKNAI 712 (712)
T ss_pred eeEEEcCCCCHHHHHHHHcCCHHHHHHhcC
Confidence 344444334789999999999999999874
No 13
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=1.4e-138 Score=1208.56 Aligned_cols=641 Identities=21% Similarity=0.283 Sum_probs=479.5
Q ss_pred HHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceeccccc
Q 003763 4 AMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNL 83 (797)
Q Consensus 4 ~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~~ 83 (797)
.|+++|.+ ++ | +|+++++||++|+...++. |.++|.|++..+++| ++.|+|||+|||||+++
T Consensus 74 ~f~~~G~~--~v-p-~~~v~~~DH~~~~~~g~~~-------------n~~~~~~~~~~a~k~-Gi~f~~pg~GI~Hqv~~ 135 (751)
T PRK11413 74 TAKASGME--RF-P-LPYVLTNCHNSLCAVGGTI-------------NEDDHVFGLSAAQKY-GGIFVPPHIAVIHQYMR 135 (751)
T ss_pred HHHHcCCC--cC-C-CCEEEECCCCCcCCCCCCc-------------cHHHHHHHHHHHHHc-CCcEECCCCCeECcCch
Confidence 46677875 34 6 5899999999999754432 334455555555555 46899999999999999
Q ss_pred ccccceeecCCCcccC-CeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhhHH
Q 003763 84 EYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLV 162 (797)
Q Consensus 84 E~~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakDvi 162 (797)
|+|+ .| +++|||||||+ +||||+||||||++|++.+|+|++||+++||+|+|+|+|+|++||++||||
T Consensus 136 E~~a----------~PG~~ivGtDSHT~-~GalG~la~GvGgtd~a~~mag~~~~~kvPe~i~V~LtG~l~~gV~aKDvi 204 (751)
T PRK11413 136 EMMA----------GGGKMILGSDSHTR-YGALGTMAVGEGGGELVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVA 204 (751)
T ss_pred hhcc----------CCCcEEEeeCcCcc-cchhhhceeCCChHHHHHHHhCCeeeccCCCEEEEEEEeecCCCcCHHHHH
Confidence 9555 45 58999999996 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCc-cceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHh
Q 003763 163 LTVTQMLRKHGV-VGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRAN 241 (797)
Q Consensus 163 L~i~~~l~~~G~-~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~~~ 241 (797)
|+|+++|+.+|+ +||+|||+||||++||+++|||||||++|+|||+||||+|++|++||+.++|.+++..
T Consensus 205 L~ii~~l~~~G~v~~k~vEF~G~gv~~LS~~~R~TI~NM~~E~GA~~~ifp~De~t~~yL~~~gr~~~~~~--------- 275 (751)
T PRK11413 205 LAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNGVDVMTTETTCLSSIWQTDEEVHNWLALHGRGQDYCE--------- 275 (751)
T ss_pred HHHHHHHhhcCcccceEEEEECCccccCCHhHHhhhhhcccccCceEEEecCcHHHHHHHHhCCChhhcee---------
Confidence 999999999999 6999999999999999999999999999999999999999999999999998764321
Q ss_pred hhhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccCCC
Q 003763 242 KMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGT 321 (797)
Q Consensus 242 ~l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 321 (797)
+.+|++|.|+++++||||+|+|+||+|++|||++||+|+.+++.++++.. +.++... ......+++.+
T Consensus 276 ------l~~D~~A~Yd~~ieiDLs~leP~VA~P~~Pdnv~~v~e~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~- 343 (751)
T PRK11413 276 ------LNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDELNQNLTDILREV-EIESERV----AHGKAKLSLLD- 343 (751)
T ss_pred ------ccCCCCCCeeEEEEEEcccceeeecCCCChhhCcChhhcccchhhhcchh-hhhhhhh----hhhhccccccc-
Confidence 25899999999999999999999999999999999999998888776532 1111110 00111111110
Q ss_pred ccccc--CccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccC-CceeEEEecCCHHHHHHHHHcCcHHHHHhcCcE
Q 003763 322 PAQLR--HGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVK-PWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFH 398 (797)
Q Consensus 322 ~~~l~--~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~-~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~ 398 (797)
.+. .-+|+|||||||||||++||+.||++| +|++|+ ++||++|+|||++|+++|+++|++++|+++||.
T Consensus 344 --ki~~~~~~Idq~~IGSCTNg~~eDl~~AA~IL------kgk~v~~~~v~~~V~PgS~~V~~~l~~~G~~~~l~~AGa~ 415 (751)
T PRK11413 344 --KIENGRLKVQQGIIAGCSGGNYENVIAAANAL------RGQSCGNDTFSLSVYPSSQPVFMDLAKKGVVADLMGAGAI 415 (751)
T ss_pred --cccCCCcEeeeEEEecCCCCCHHHHHHHHHHh------cCcccCCCceeEEEECCCHHHHHHHHHcCcHHHHHHcCCE
Confidence 122 236899999999999999999999999 899998 569999999999999999999999999999999
Q ss_pred EeccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCC-----ceecChHHHHHHhhc-ccccccCC
Q 003763 399 IVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRA-----NYLASPPLVVAYALA-GSVNIDFE 472 (797)
Q Consensus 399 i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~-----~yLaSP~~vaAsAia-G~i~~d~~ 472 (797)
|.+||||+|+|+++. +. ++++ +|+|+||||+||||++.+. +||+||+++||+|+. |+|+
T Consensus 416 i~~~gCgpCiG~~~~-~~-------~ge~---~isTsNRNF~GR~G~~~~~~ylasvyL~sp~~~Aasa~~gG~it---- 480 (751)
T PRK11413 416 IRTAFCGPCFGAGDT-PA-------NNGL---SIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLT---- 480 (751)
T ss_pred ECCCchhhhhCcCCc-CC-------CCCE---EEeecCCCCCCCCCCccccceecccccCCHHHHHHHHHhCCccC----
Confidence 999999999998654 22 3554 7899999999999998876 677789999999999 6995
Q ss_pred CCccccCCCCceeccccCCCChHHHHHHhhhccCchhhh-hhcccccCCCcccccccCCC-CCccccCCCCccccCCCCC
Q 003763 473 TEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFK-ATYEAITKGNPMWNQLSVPS-GTLYAWDPKSTYIHEPPYF 550 (797)
Q Consensus 473 ~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~p~~~~-~~y~~~~~~~~~~~~l~~~~-~~~~~w~~~st~i~~pp~f 550 (797)
+|...+. ++ +. ..+.++..+|. ..|....... ..+++.. .++.+|+ -+
T Consensus 481 -~p~~~~~----------~~---~~---p~~~~~~~~y~~~~~~~~~~~~---~~~~~~~gPni~~~p----------~~ 530 (751)
T PRK11413 481 -SATELDC----------WD---NV---PEYAFDVTPYKNRVYQGFGKGA---TQQPLIYGPNIKDWP----------EM 530 (751)
T ss_pred -CHHHccc----------cc---cC---CCcccCccccccccccCCCCCC---CcceEEeCcCCCCCC----------CC
Confidence 5543320 11 11 11334554443 3332211111 1122211 1233333 22
Q ss_pred ccCCCCCCCCCCcccceEEeecCCCcc-cCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchh
Q 003763 551 KDMTMSPPGPHGVKGAYCLLNFGDSIT-TDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIR 629 (797)
Q Consensus 551 ~~~~~~~~~~~~i~~~~vl~~~gd~it-TD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r 629 (797)
++ +.+-..++|+.|++|||| |||||||| +||++ |||-+.+...+|...
T Consensus 531 ~~-------l~~~~~~kv~~k~~D~itTTD~i~paG---------~~l~~--------------Rsn~~~is~~~~~~~- 579 (751)
T PRK11413 531 GA-------LTDNILLKVCSKILDPVTTTDELIPSG---------ETSSY--------------RSNPLGLAEFTLSRR- 579 (751)
T ss_pred CC-------CCCcEEEEEEEEeCCCCccccccccCC---------Ccccc--------------ccCHHHHhhhhcccc-
Confidence 22 234456689999999997 99999998 46665 556666666666432
Q ss_pred hhhhhcCCC-C-CCceeccCCCcccccchHHHHH--------------HhhCCCeEEEeCCccCCCCcchhhhhhhhhcC
Q 003763 630 LVNKLLNGE-V-GPKTIHIPTGEKLSVFDAAMRY--------------KNEGHDTVILAGAEYGSGSSRDWAAKGPMLLG 693 (797)
Q Consensus 630 ~~n~~~~~~-~-~~~~~~~~~~~~~~v~~~a~~y--------------~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lG 693 (797)
.|.+.... . .........|. +.+.++.| ++.|.++ ||+|.||||||||||||++|++||
T Consensus 580 -d~~~~~ra~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iv~~~nyG~GSSREhAAla~r~LG 654 (751)
T PRK11413 580 -DPGYVGRSKAVAELENQRLAGN---VSELTEVFARIKQIAGQEHIDPLQTEIGS-MVYAVKPGDGSAREQAASCQRVLG 654 (751)
T ss_pred -ChhhHHHHHHHhhhhhhhhcCC---cHHHHHHHHhhhhccccccccccccCceE-EEEEeCCCCCccHHHHHHHHHHhC
Confidence 22221000 0 00000001111 12333344 5566664 555599999999999999999999
Q ss_pred ccEEEecchhhH-hhhhcccCCccceecCCcchhhcccCCCCeEEEEeCCCCcccCCCC-cEE--EEEcCCC--eEEEEE
Q 003763 694 VKAVIAKSFERI-HRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPG-QDV--RVVTDSG--KSFTCV 767 (797)
Q Consensus 694 v~aVIA~SFarI-f~~Nlin~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g-~~v--~v~~~~g--~~~~~~ 767 (797)
|+||||+||||| ||+||||+|||||+|.+.. .+..++.++|+.... .+..+ +.+ .+...+| +.+.+.
T Consensus 655 i~AVIAkSFARIf~RsNlIN~GilpL~f~~~~-----~i~~GD~l~id~~~~--~l~~~~~~~~~~i~~~~~~~~~~~~~ 727 (751)
T PRK11413 655 GLANIAEEYATKRYRSNVINWGMLPFQMAEEP-----TFEVGDYIYIPGIRA--ALDNPGTTFKGYVIHEDAPVTEITLY 727 (751)
T ss_pred ceEEEEeeehHHHHhhhhhhcCccceecCchh-----hCCCCCEEEEechhh--hhhcCCCceeEEEEeCCCceeeEEEE
Confidence 999999999999 5559999999999998653 356788999985431 23323 223 3333443 445555
Q ss_pred ecCCCHHHHHHHHhcCHHHHHHH
Q 003763 768 IRFDTEVELAYFDHGGILQYVIR 790 (797)
Q Consensus 768 ~~~~~~~e~~i~~aGGll~~v~~ 790 (797)
+...+++|++||++||+|||+++
T Consensus 728 ~~~l~~~~~eil~aGGllny~k~ 750 (751)
T PRK11413 728 MESLTAEEREIIKAGCLINYNKN 750 (751)
T ss_pred eCCCCHHHHHHHHcCCHHHHhhc
Confidence 42238999999999999999986
No 14
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-134 Score=1113.52 Aligned_cols=663 Identities=31% Similarity=0.483 Sum_probs=549.0
Q ss_pred HHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceecccccc
Q 003763 5 MNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLE 84 (797)
Q Consensus 5 ~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~~E 84 (797)
+++++....++ .+|..+++||.+.+-..+. +.+.+.-..|+|.|+||..+.++| +|.||+||+||+|||++|
T Consensus 104 LqFms~Gl~kv--avPstIhCdhli~a~~gg~-----~Dl~~a~~~Nkevydfl~saakky-gi~Fw~pGsGIiHQIvlE 175 (778)
T KOG0453|consen 104 LQFMSSGLKKV--AVPSTIHCDHLIEAQVGGD-----KDLQRASDLNKEVYDFLESAAKKY-GIGFWKPGSGIIHQIVLE 175 (778)
T ss_pred HHHHhcCcccc--cCCceEEecceeeeccCCc-----chhhhhhhhhHHHHHHHHHHHHhc-CCCccCCCCceeeeeeee
Confidence 45555444433 2456799999998876664 446777899999999999999987 799999999999999999
Q ss_pred cccceeecCCCcccCC-eEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhhHHH
Q 003763 85 YLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVL 163 (797)
Q Consensus 85 ~~a~~v~~~~G~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakDviL 163 (797)
+ |+||+ ++|||||||+++||||+|++||||+|++.+|+++||.++.|++++|+|+|+|+.|+++|||||
T Consensus 176 n----------YAfPG~m~igTDSHTpn~GGLG~l~igVggaDAvdvmA~~pWelk~PkvigV~LtG~l~gwtSpKDvIl 245 (778)
T KOG0453|consen 176 N----------YAFPGLMMIGTDSHTPNAGGLGCLAIGVGGADAVDVMATQPWELKCPKVIGVKLTGQLPGWTSPKDVIL 245 (778)
T ss_pred c----------ccCCcceEEeccCCCCCCCccceeeeccccchHHHHhcCCCceecCCceEEEEEeeecCCCCChhHHHH
Confidence 4 55785 789999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHhhh
Q 003763 164 TVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKM 243 (797)
Q Consensus 164 ~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~~~~l 243 (797)
++.+.|..+|++|++||||||||.+||++.|+|||||++|.|||+|+||.|+++.+||+.+||.+. .+..++|+++ +
T Consensus 246 klagiltvkggtg~iiEy~G~Gv~slSctgm~TIcNMgaEiGAtTs~FP~n~~m~~yL~atgr~~i-a~~a~~~~~~--~ 322 (778)
T KOG0453|consen 246 KLAGILTVKGGTGHIIEYFGPGVNSLSCTGMATICNMGAEIGATTSLFPYNERMIDYLQATGRNEI-AREARETLDA--I 322 (778)
T ss_pred hhhceeeecCccceeEEEecCccceeccccceeeccccccccccccccCCCHHHHHHHHHhCcccc-hhhhHHhhhh--c
Confidence 999999999999999999999999999999999999999999999999999999999999999864 2334445544 2
Q ss_pred hcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccCCCcc
Q 003763 244 FVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPA 323 (797)
Q Consensus 244 ~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 323 (797)
..+|++|.||++|+||||+|+|+|.+|++||-..||+++.++.. + +|||.
T Consensus 323 ----l~AD~~a~Ydk~ieIdLstL~P~vnGPfTpdl~~pvskl~e~~~--------k------------------n~wp~ 372 (778)
T KOG0453|consen 323 ----LAADKGAHYDKIIEIDLSTLEPHVNGPFTPDLSTPVSKLGENSE--------K------------------NGWPI 372 (778)
T ss_pred ----ccCCCCCCcceEEEEEhhhcccccCCCCCccccChHHHHhHHhh--------h------------------cCCce
Confidence 36899999999999999999999999999999999999875211 1 45554
Q ss_pred cccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccC
Q 003763 324 QLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYG 403 (797)
Q Consensus 324 ~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~g 403 (797)
.|..++||||||+||+||-.+|.++ ++|..+|+ ++.|.+.|+|||.+|+..++|.|++++|+++|+.+++++
T Consensus 373 -----~i~~gligSCTNSsyeDm~raa~iv-~~a~~~gl--k~~v~F~VtpgSeqirAtierdG~~e~l~~~G~~vLana 444 (778)
T KOG0453|consen 373 -----KIKVGLIGSCTNSSYEDMSRAADIV-KQAKGKGL--KPKVPFYVTPGSEQIRATIERDGIWETLEKAGGIVLANA 444 (778)
T ss_pred -----eeeeeEEEeecCccHHHHHHHHHHH-HHHHhcCC--CCCcceEeccChHHhhhhHhhcchHHHHHhcCCEEcccC
Confidence 3567899999999999988888765 88887766 556999999999999999999999999999999999999
Q ss_pred CccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCcc-CCceecChHHHHHHhhcccccccCCCCccccCCCC
Q 003763 404 CTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLT-RANYLASPPLVVAYALAGSVNIDFETEPVGVGKDG 482 (797)
Q Consensus 404 Cg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~-~~~yLaSP~~vaAsAiaG~i~~d~~~~plg~~~~G 482 (797)
||||||+|.+- -+++||.. +.|+|+||||.|||+.+. ...||+||++|+|+||+|++.|++++|.+ .+++|
T Consensus 445 CGPCIGqw~r~------dvk~GE~n-tivts~NRNFtgRnd~np~t~afltSP~iVtA~aiaG~l~fnp~td~l-~~~dg 516 (778)
T KOG0453|consen 445 CGPCIGQWDRK------DIKKGEKN-TIVTSYNRNFTGRNDANPATHAFLTSPEIVTALAIAGDLSFNPETDSL-TAPDG 516 (778)
T ss_pred cCCcccccccc------cccCCCcC-ceeeeecccccccCCCCcchhhcccCHHHHHHHHHhccccCCCccccc-ccCCc
Confidence 99999998651 14456652 358999999999998665 56899999999999999999999999988 57889
Q ss_pred ceeccccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCC-CCccccCCCCccccCCCCCccCCCCCCCCC
Q 003763 483 KKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPS-GTLYAWDPKSTYIHEPPYFKDMTMSPPGPH 561 (797)
Q Consensus 483 ~~v~l~diwP~~~ei~~~~~~~~~p~~~~~~y~~~~~~~~~~~~l~~~~-~~~~~w~~~st~i~~pp~f~~~~~~~~~~~ 561 (797)
+.+.|+. |..+|+.+ +.++| |....+.-+.+. ...+..|++|++++....|+. +...
T Consensus 517 ~~fk~~~--p~g~~lp~---~g~d~------------g~~ty~ap~~~~~~~~v~v~p~s~rlqlLepF~~-----w~gk 574 (778)
T KOG0453|consen 517 KAFKLEP--PIGDELPK---KGFDP------------GQDTYQAPPSSSSVVEVDVDPTSDRLQLLEPFDK-----WDGK 574 (778)
T ss_pred ccccccC--CcCCCCcc---cccCC------------CcccccCCCCCCCcceeecCCcccchhhcCCCCc-----cccc
Confidence 9988865 67776543 33333 122222211111 134677899999988887763 4567
Q ss_pred CcccceEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccc--cccCCchhhhccccccchhhhhhhcCCCC
Q 003763 562 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSY--GSRRGNDEIMARGTFANIRLVNKLLNGEV 639 (797)
Q Consensus 562 ~i~~~~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~y--g~rrgn~evm~rg~F~n~r~~n~~~~~~~ 639 (797)
|++++.+|+++..+|||||||-|| .||+++|+-..-.|.+ |+- |-|.|- .|
T Consensus 575 d~edl~ilikv~gkCttDhIsaaG---------pwlkY~Ghl~nisnn~~igai--n~En~e---------~n------- 627 (778)
T KOG0453|consen 575 DLEDLKILIKVKGKCTTDHISAAG---------PWLKYRGHLENISNNDLIGAI--NKENGE---------AN------- 627 (778)
T ss_pred ccccceEEEEEecccCccccccCC---------cceeccchhhhcccchhhhhc--chhhhh---------hh-------
Confidence 899999999999999999999997 5999988655444322 111 122110 11
Q ss_pred CCceeccCCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCcccee
Q 003763 640 GPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLC 719 (797)
Q Consensus 640 ~~~~~~~~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~ 719 (797)
.-.+..+|+++.+.+.+..||+.|.+||+|+++|||.||||||||.+|+.+|+++||.+||+|||.+||+|+|||||+
T Consensus 628 --~~~n~~~ge~~~vp~~~~~yk~~g~~wvvv~~~NyGeGSsREhAAlepr~lGg~~ii~kSFarIhetNlkkqglLpLt 705 (778)
T KOG0453|consen 628 --CVKNYLTGEFGTVPDTARDYKKHGIRWVVVGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLT 705 (778)
T ss_pred --hhhhccccccCCcCchhhhHHhcCceeEEEcccccCCCcchhhhhhchhhcCCcEEEeehhHHHHHhhhhhcceeeee
Confidence 123345788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhcccCCCCeEEEEeCCCCcccCCCCcEEEE--EcCCCeEEEEEecCC-CHHHHHHHHhcCHHHHHHH
Q 003763 720 FKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRV--VTDSGKSFTCVIRFD-TEVELAYFDHGGILQYVIR 790 (797)
Q Consensus 720 ~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v--~~~~g~~~~~~~~~~-~~~e~~i~~aGGll~~v~~ 790 (797)
|.++.+|+++. ..+.+++ . ++.++.||+++++ +..+|++++.++.+. +..|++|+++|..||++++
T Consensus 706 fanpadydKi~--~~d~~~~--~-~L~~~~~gkp~t~~vt~~dg~~~~~kl~ht~n~~Qi~~fkaGsaln~~~e 774 (778)
T KOG0453|consen 706 FANPADYDKIR--PADKVSI--K-GLTRRTPGKPLTVVVTKKDGKEVEIKLNHTGNKLQIEWFKAGSALNVMKE 774 (778)
T ss_pred ccCHHHhhhcC--hhcccch--h-hhhhhcCCCceeEEEECCCCcEEEEecccccchhhhHhhhcchHHHHHHH
Confidence 99999999864 3333333 2 2446778887665 456888888887665 7899999999999998875
No 15
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=2.9e-123 Score=1014.46 Aligned_cols=382 Identities=76% Similarity=1.216 Sum_probs=370.1
Q ss_pred ChHHHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceecc
Q 003763 1 MRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQ 80 (797)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (797)
|||+++++|+||+++||.+|++|++||++|++..+..++..+|+.++++||.|||.|++|++++|.+++|+|||+|||||
T Consensus 19 ~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~~~~~~~~~~~~~~~~~N~e~~~~~~~~~~~~~~~~~~~pg~GI~Hq 98 (404)
T cd01586 19 MRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLKWGQKAFKNLRVVPPGTGIIHQ 98 (404)
T ss_pred HHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCccccCHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCCCCCCCCEeee
Confidence 89999999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred cccccccceee----cCCCcccCCeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCC
Q 003763 81 VNLEYLGRVVF----NTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGV 156 (797)
Q Consensus 81 v~~E~~a~~v~----~~~G~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gV 156 (797)
|++|+||++++ +++|+++|+++|||||||||+||||+||||||++|++.+|+||++||++||+|+|+|+|+|++||
T Consensus 99 v~~E~~a~~~~~~~~~~~g~~~P~~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~~~~vP~~i~V~l~G~l~~gV 178 (404)
T cd01586 99 VNLEYLARVVFTSEEDGDGVAYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMLLPEVVGVKLTGKLRPGV 178 (404)
T ss_pred ehhhhcccceeecccCCCceEeeeeEeecCCCCccCCcccceEecccHHHHHHHHhCCccccCCCcEEEEEEEeecCCCc
Confidence 99999999998 45789999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHH
Q 003763 157 TATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIES 236 (797)
Q Consensus 157 takDviL~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~ 236 (797)
|+|||||+|+++|+.+|++|++|||+|||+++||+++|||||||++|+|||++|||+|
T Consensus 179 taKDviL~li~~l~~~G~~g~~iEf~G~gi~~LS~~~R~Ti~NMa~E~GA~~gif~~D---------------------- 236 (404)
T cd01586 179 TATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD---------------------- 236 (404)
T ss_pred CHHHHHHHHHHHhCcCCccceEEEEECcccccccHhHhhhhhccchhhCceeeEeccC----------------------
Confidence 9999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhhhhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCcccccccccee
Q 003763 237 YLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEF 316 (797)
Q Consensus 237 y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (797)
+++|+||||+|||+||+|++|+|++||.
T Consensus 237 --------------------d~~i~iDls~leP~Va~P~~Pd~v~~v~-------------------------------- 264 (404)
T cd01586 237 --------------------TQVVELDLSTVEPSVSGPKRPQDRVPLH-------------------------------- 264 (404)
T ss_pred --------------------ceEEEEEcccceeeecCCCCcccccCcC--------------------------------
Confidence 4579999999999999999999999982
Q ss_pred ccCCCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcC
Q 003763 317 NFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLG 396 (797)
Q Consensus 317 ~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG 396 (797)
++|++||||||||||+||++.||++|+|||+.+|+||+||||++|+|||++|+++|+++|++++|.++|
T Consensus 265 -----------~~Id~v~IGSCTNgr~eDl~~aA~iL~~~a~~kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG 333 (404)
T cd01586 265 -----------GSVVIAAITSCTNTSNPSVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRVVTKYLEASGLLPYLEKLG 333 (404)
T ss_pred -----------CcEeEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCChHHHHHHcC
Confidence 136799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhcccc
Q 003763 397 FHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 467 (797)
Q Consensus 397 ~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i 467 (797)
|.|.+||||+|+|+++++.+..+..+.+||+++++|||+||||+||||+..+++|||||++||||||+|+|
T Consensus 334 a~v~~pgCg~CiG~~g~~~~~~~~~~~~ge~~~~~vsT~NRNF~GR~G~~~~~vyLaSP~~vAAsAi~G~i 404 (404)
T cd01586 334 FHVVGYGCTTCIGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLVVAYALAGTV 404 (404)
T ss_pred CEEcCCcchhccCCCCCCCchhhhhccCCCeEEEEEeccCCCCCCCCCCCcCceEECCHHHHHHHHhcccC
Confidence 99999999999999999988888888999998888999999999999999999999999999999999986
No 16
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=7.1e-115 Score=973.09 Aligned_cols=413 Identities=26% Similarity=0.397 Sum_probs=365.1
Q ss_pred HHHhhCCCCCccCCCCceEEEecCcccCCCC--CchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceeccc
Q 003763 4 AMNKLGGDSNKINPLVPVDLVIDHSVQVDVA--RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQV 81 (797)
Q Consensus 4 ~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~--~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv 81 (797)
.|+++|. ++++|. ++++++||++|+++. ...++...|+.+++++|.++|.+ +| +++.+||+||||||
T Consensus 43 ~~~~~g~--~v~~p~-~~~~~~DH~vp~~~~~~~~~~~~~~~~~~~~r~~a~~~gi------~~--~~v~~p~~GI~Hqv 111 (465)
T TIGR00170 43 GLRQAGR--KVRRPQ-KTFATMDHNIPTQNRDFNIKDEVAKIQVTELEKNCKEFGV------RL--FDLHSVDQGIVHVM 111 (465)
T ss_pred HHHHcCC--CcCCCc-CEEEEeCCCCCCCCccccccCHHHHHHHHHHHHHHHHhCC------ee--eccCCCCCCEeCeE
Confidence 4666663 467888 599999999999763 45667788999999999998876 22 45678999999999
Q ss_pred ccccccceeecCCCcccC-CeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhh
Q 003763 82 NLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATD 160 (797)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakD 160 (797)
++| +|+++| +++|||||||||+||||+||||||++|++.+|+||++||++||+|+|+|+|+|++||++||
T Consensus 112 ~~E---------~g~~~PG~~ivgtDSHT~t~GalGala~GvG~te~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~aKD 182 (465)
T TIGR00170 112 GPE---------QGLTLPGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKD 182 (465)
T ss_pred ccc---------cCcccCCceEEecCCCccccccccceEEccCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHH
Confidence 999 899999 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHH
Q 003763 161 LVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRA 240 (797)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~~ 240 (797)
|||+|+++|+.+|++||+|||+|+||++||+++|||||||++|+||++||||+|++|++||+.+++.+. .++|.++
T Consensus 183 viL~ii~~lg~~G~~g~~vEF~G~gv~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~r~~~~~----~~~~~~~ 258 (465)
T TIGR00170 183 IILAIIGKTGVAGGTGHVIEFCGEAIRDLSMEGRMTVCNMAIEAGARAGLIAPDETTFEYCKGRPHAPK----GKEFDKA 258 (465)
T ss_pred HHHHHHHHhCccCcceEEEEEEccccccccHHHhhhhhhcchhhCceeeEecCChhHHHHHhcCCcccc----hhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998876543 3678888
Q ss_pred hhhhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccCC
Q 003763 241 NKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHG 320 (797)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (797)
+.+|+.. .+|++|.|+++++||||+|+|+||+|++|+|++||+|+.+++....+. .++.....+++|+|
T Consensus 259 ~~~~~~l-~~d~~a~Y~~~i~iDls~leP~Va~P~~P~n~~~v~e~~~~~~~~~~~----------~~~~~~~~~~~~~~ 327 (465)
T TIGR00170 259 VAYWKTL-KTDEGAVFDTVITLEANDISPQVTWGTNPGQVLPVNSEVPDPESFADP----------VDKASAERALAYMG 327 (465)
T ss_pred HHhhhhc-cCCCCCceeEEEEEEcccceeeecCCCChhhccCccccCCChhhhcch----------hhhhhhhhhhhhcc
Confidence 8898753 689999999999999999999999999999999999987655543221 01111123344544
Q ss_pred Ccc--cccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcE
Q 003763 321 TPA--QLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFH 398 (797)
Q Consensus 321 ~~~--~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~ 398 (797)
... .+.+.+|+|||||||||||++||+.||++| +|+||+||||++|+|||++|+++|+++||+++|+++||.
T Consensus 328 ~~~~~~~~~~~Id~~~IGSCTNgr~~dl~aaA~vl------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~ 401 (465)
T TIGR00170 328 LEPGTPLKDIKVDKVFIGSCTNSRIEDLRAAAAVI------KGRKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGFE 401 (465)
T ss_pred ccCCcccCCCeEEEEEEecCCCCCHHHHHHHHHHh------cCCCcCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCE
Confidence 332 266789999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred EeccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhccccc
Q 003763 399 IVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 468 (797)
Q Consensus 399 i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i~ 468 (797)
|.+||||+|+|+++++.++ +++ ++||+||||+||||+. ..+|||||++||||||+|+|+
T Consensus 402 i~~~gCg~C~G~~~~~~~~-------ge~---~isTsNRNF~GR~G~~-~~~yLaSP~~vAAsAi~G~it 460 (465)
T TIGR00170 402 WREPGCSMCLGMNNDRLPE-------GER---CASTSNRNFEGRQGRG-GRTHLVSPAMAAAAAIHGHFV 460 (465)
T ss_pred EcCCccccccCcCCCCCCC-------CCE---EEEecCCCCCCCCCCC-CCEEEcCHHHHHHHHhCceec
Confidence 9999999999999887655 454 5799999999999985 468999999999999999994
No 17
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=5.6e-114 Score=967.17 Aligned_cols=413 Identities=28% Similarity=0.420 Sum_probs=366.1
Q ss_pred HHHhhCCCCCccCCCCceEEEecCcccCCCCC---chhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceecc
Q 003763 4 AMNKLGGDSNKINPLVPVDLVIDHSVQVDVAR---SENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQ 80 (797)
Q Consensus 4 ~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~---~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (797)
.|+++|. +++||.+ +++++||++|+++.+ ..+....|+.+++++|.++|++. | +++.+||+|||||
T Consensus 44 ~~~~~g~--~v~~P~~-~~~~~DH~vp~~~~~~~~~~~~~~~~~~~~~r~~a~~~gi~------~--~~~~~p~~GI~Hq 112 (471)
T PRK12466 44 GLRARGR--TVRRPDL-TLAVVDHVVPTRPGRDRGITDPGGALQVDYLRENCADFGIR------L--FDVDDPRQGIVHV 112 (471)
T ss_pred HHHHcCC--cccCCCC-eEEEeCCCCCCCccccccccCHHHHHHHHHHHHHHHHcCCe------e--eccCCCCCCEEeE
Confidence 3556663 5799998 579999999998732 33456778888888888887641 2 3456899999999
Q ss_pred cccccccceeecCCCcccCC-eEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchh
Q 003763 81 VNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTAT 159 (797)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtak 159 (797)
+++| +|+++|+ ++|||||||||+||||+||||||++|++.+|+||++||++||+|+|+|+|+|++||++|
T Consensus 113 v~~E---------~G~~~PG~~ivg~DSHT~t~GalGala~GvG~td~~~~l~tg~~~~~vPetv~V~l~G~l~~gV~aK 183 (471)
T PRK12466 113 VAPE---------LGLTLPGMVIVCGDSHTTTYGALGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAK 183 (471)
T ss_pred Eccc---------cCcccCCceEEccCCCcCCcChhhheEEccCHHHHHHHHhCCeEEeeCCcEEEEEEEcccCCCcCHH
Confidence 9999 8999996 79999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHH
Q 003763 160 DLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLR 239 (797)
Q Consensus 160 DviL~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~ 239 (797)
||||+|+++|+.+|++||+|||+|||+++||+++|||||||++|+||++||||+|++|++||+.++|.++. ++|.+
T Consensus 184 DviL~ii~~lg~~G~~g~~iEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~~----~~~~~ 259 (471)
T PRK12466 184 DLILALIARIGADGATGYAIEFAGEAIRALSMEGRMTLCNMAVEAGARGGLIAPDETTFDYLRGRPRAPKG----ALWDA 259 (471)
T ss_pred HHHHHHHHHhCcCCccceEEEEECCccccCCHHHHhhhhhcccccCceEEEecCChHHHHHHHhCCCchhH----HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987653 36888
Q ss_pred HhhhhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccC
Q 003763 240 ANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFH 319 (797)
Q Consensus 240 ~~~l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (797)
++..|+.. .+|++|.|+++++||||+|||+||+|++|+|++||+|+.+++.++++.. ++......++|+
T Consensus 260 ~~~~~~~~-~~D~~a~Y~~~i~iDls~leP~va~P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~y~ 328 (471)
T PRK12466 260 ALAYWRTL-RSDADAVFDREVEIDAADIAPQVTWGTSPDQAVPITGRVPDPAAEADPA----------RRAAMERALDYM 328 (471)
T ss_pred HHhhhhcc-cCCCCCceEEEEEEEcccceEeecCCCChhhceEccccCcChhhhcchh----------hhhhhhhhhhhc
Confidence 88888653 6899999999999999999999999999999999999998887765421 111112345565
Q ss_pred CCccc--ccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCc
Q 003763 320 GTPAQ--LRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGF 397 (797)
Q Consensus 320 g~~~~--l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~ 397 (797)
++... +.+.+|+|||||||||||+|||+.||++| ||+||+||||++|+|||++|+++|+++||+++|+++||
T Consensus 329 ~l~~g~~~~~~~Id~~~IGSCTNgr~eDl~~aA~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~~~~aG~ 402 (471)
T PRK12466 329 GLTPGTPLAGIPIDRVFIGSCTNGRIEDLRAAAAVL------RGRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGF 402 (471)
T ss_pred ccCCCcccCCceEEEEEEeccCCCChHHHHHHHHHH------cCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCC
Confidence 54333 56789999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EEeccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhccccc
Q 003763 398 HIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 468 (797)
Q Consensus 398 ~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i~ 468 (797)
.|.+||||+|+|+++++.++ +|+ +|||+||||+||||+ ...+|||||++||||||+|+|+
T Consensus 403 ~i~~~gCg~C~G~~~~~~~~-------ge~---~vsT~NRNF~GR~G~-~~~~yLaSP~~vAAsAi~G~I~ 462 (471)
T PRK12466 403 EWREPGCSMCLAMNDDVLAP-------GER---CASTTNRNFEGRQGP-GARTHLMSPAMVAAAAVAGHIT 462 (471)
T ss_pred EEcCCccccccCcCCCCCCC-------CCE---EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCcEeC
Confidence 99999999999999877544 554 689999999999999 4567999999999999999994
No 18
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=7.8e-114 Score=966.06 Aligned_cols=414 Identities=27% Similarity=0.390 Sum_probs=367.2
Q ss_pred HHHHhhCCCCCccCCCCceEEEecCcccCCCC--CchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceecc
Q 003763 3 DAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA--RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQ 80 (797)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~--~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (797)
++|+++|. ++++|.. +.+++||++|++.. ...++...|+.+++++|.++|.|. | +++.+|++|||||
T Consensus 42 ~~~~~~g~--~v~~p~~-~~~~~DH~v~~~~~~~~~~~~~~~~~~~~~r~~a~~~gi~------~--~~~~~~~~GI~Hq 110 (466)
T PRK05478 42 EGLRLAGR--KVRRPDL-TFATMDHNVPTTDRDLPIADPVSRIQVETLEKNCKEFGIT------L--FDLGDPRQGIVHV 110 (466)
T ss_pred HHHHHcCC--CccCCCC-eEEEcCCCCCCCcccccccCHHHHHHHHHHHHHHHHcCCe------e--eccCCCCCCEeCe
Confidence 35666664 4789996 88999999999875 456667889999999999988772 2 3456788999999
Q ss_pred cccccccceeecCCCcccC-CeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchh
Q 003763 81 VNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTAT 159 (797)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtak 159 (797)
+++| +|+++| +++|||||||||+||||+||||||++|++.+|+||++||++||+|+|+|+|+|++||++|
T Consensus 111 v~~E---------~g~~~PG~~ivGtDSHT~t~GalGa~a~GvG~td~a~~m~tg~~~~~vPe~i~V~l~G~l~~gV~aK 181 (466)
T PRK05478 111 VGPE---------QGLTLPGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAK 181 (466)
T ss_pred Eccc---------cccccCCceEEecCCCccccchhhheEeCCCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHH
Confidence 9999 889999 689999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHH
Q 003763 160 DLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLR 239 (797)
Q Consensus 160 DviL~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~ 239 (797)
||||+|+++|+.+|++|++|||+||||++||+++|+|||||++|+||++||||+|++|++||+.+++.. .+++|.+
T Consensus 182 DviL~ii~~l~~~g~~g~~vEf~G~gv~~Ls~~~R~Ti~NMa~E~GA~~~i~~~De~t~~yl~~r~~~~----~~~~~~~ 257 (466)
T PRK05478 182 DIILAIIGKIGTAGGTGYVIEFAGEAIRALSMEGRMTICNMSIEAGARAGLVAPDETTFEYLKGRPFAP----KGEDWDK 257 (466)
T ss_pred HHHHHHHHHhCcCCcceEEEEEECccccccCHHHHhhhhhcccccCceeeeecCCHhHHHHHhcCCccc----cHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999654432 4678899
Q ss_pred HhhhhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccC
Q 003763 240 ANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFH 319 (797)
Q Consensus 240 ~~~l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (797)
++.+|+.. .+|++|.|+++++||||+|||+||+|++|+|++||+|+.+++.++++... +.......+|+
T Consensus 258 a~~~~~~l-~~D~~a~Y~~~i~iDls~leP~va~P~~P~n~~~v~e~~~~~~~~~~~~~----------~~~~~~~~~y~ 326 (466)
T PRK05478 258 AVAYWKTL-KSDEDAVFDKVVTLDAADIEPQVTWGTNPGQVISIDGKVPDPEDFADPVK----------RASAERALAYM 326 (466)
T ss_pred HHHhhhcc-cCCCCCceeEEEEEEcccceeeecCCCChhhceEccccCcChhhhcchhh----------hhhhhhhhhhc
Confidence 99998754 68999999999999999999999999999999999999988887765431 11112234454
Q ss_pred CCcc--cccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCc
Q 003763 320 GTPA--QLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGF 397 (797)
Q Consensus 320 g~~~--~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~ 397 (797)
+... .+.+.+|+|||||||||||+|||++||++| +|+||+||||++|+|||++|+++|+++|++++|.++||
T Consensus 327 ~~~~g~~~~~~~id~~~IGSCTNg~~~dl~~aA~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~ 400 (466)
T PRK05478 327 GLKPGTPITDIKIDKVFIGSCTNSRIEDLRAAAAVV------KGRKVAPGVRALVVPGSGLVKAQAEAEGLDKIFIEAGF 400 (466)
T ss_pred ccccCCccCCCeEEEEEEecCCCCCcHHHHHHHHHh------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCC
Confidence 4322 266889999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EEeccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhccccc
Q 003763 398 HIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 468 (797)
Q Consensus 398 ~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i~ 468 (797)
.|.+||||+|+|++++..+ +|++ +|||+||||+||||+.. .+|||||++||||||+|+|+
T Consensus 401 ~i~~~gCg~C~G~~~~~l~-------~ge~---~vst~NRNF~GR~G~~~-~~yLaSP~~vaAsAi~G~It 460 (466)
T PRK05478 401 EWREPGCSMCLAMNPDKLP-------PGER---CASTSNRNFEGRQGKGG-RTHLVSPAMAAAAAITGHFV 460 (466)
T ss_pred EEcCCccccccCcCCCCCC-------CCCE---EEEecCCCCCCCCCCCC-CEEEcCHHHHHHHHhCCCcC
Confidence 9999999999999866432 4676 68999999999999655 58999999999999999994
No 19
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=6.7e-114 Score=950.71 Aligned_cols=395 Identities=32% Similarity=0.509 Sum_probs=349.1
Q ss_pred HHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceeccccc
Q 003763 4 AMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNL 83 (797)
Q Consensus 4 ~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~~ 83 (797)
.|+++|.+ +.++|. ++++||++|++..+.++ ...++.+|.++|+|++|.+++| |++|++||+||||||++
T Consensus 15 ~f~~~g~~-~v~~p~---~~~~DH~~~~~~~~~~~-----~~~a~~~n~~~~~~~r~~a~~~-gi~~~~~g~GI~Hqv~~ 84 (412)
T cd01584 15 QFMSSGLP-KVAVPS---TIHCDHLIEAQVGGEKD-----LKRAKDINKEVYDFLASAGAKY-GIGFWKPGSGIIHQIVL 84 (412)
T ss_pred HHHHhCCC-CCCCCC---eEEeCCCccccccCCCc-----hhhhhhhhHHHHHHHHHHHHHc-CCeEECCCCCeeceEch
Confidence 45667664 566766 68999999998765444 4667789999999999999998 89999999999999999
Q ss_pred ccccceeecCCCcccCC-eEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhhHH
Q 003763 84 EYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLV 162 (797)
Q Consensus 84 E~~a~~v~~~~G~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakDvi 162 (797)
|+ +++|+ ++|||||||||+||||+||||||++|++++|+|++|||++||+|+|+|+|+|++||++||||
T Consensus 85 E~----------~~~PG~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vPe~i~v~l~G~l~~gV~aKDli 154 (412)
T cd01584 85 EN----------YAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCPKVIGVKLTGKLSGWTSPKDVI 154 (412)
T ss_pred hh----------ccCCCCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCCCEEEEEEEcccCCCcCHHHHH
Confidence 94 56785 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHhh
Q 003763 163 LTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANK 242 (797)
Q Consensus 163 L~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~~~~ 242 (797)
|+|+++|+.+|++||+|||+|+|+++||+++|||||||++|+|||+||||+|++|++||+.++|+++ .+++++|. ++.
T Consensus 155 L~ii~~l~~~G~~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~-~~~~~~y~-~~~ 232 (412)
T cd01584 155 LKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYLKATGRAEI-ADLADEFK-DDL 232 (412)
T ss_pred HHHHHHhCcCCcceEEEEEECcccccCChhhhcchhhcchhhCceEEEecCChhHHHHHHhcCchHH-HHHHHHHH-hcc
Confidence 9999999999999999999999999999999999999999999999999999999999999998865 56677776 233
Q ss_pred hhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccCCCc
Q 003763 243 MFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTP 322 (797)
Q Consensus 243 l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 322 (797)
+ .+|++|.|+++++||||+|||+||+|++|||++||+|+.+.+.. .|++
T Consensus 233 l-----~~D~da~Y~~~i~iDls~leP~va~P~~P~nv~~v~e~~~~~~~--------------------------~g~~ 281 (412)
T cd01584 233 L-----VADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEK--------------------------NGWP 281 (412)
T ss_pred c-----CCCCCCCeEEEEEEEcccceEeecCCCChhcCcChhHcChhhhc--------------------------cCCc
Confidence 3 47999999999999999999999999999999999999864321 1111
Q ss_pred ccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEecc
Q 003763 323 AQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGY 402 (797)
Q Consensus 323 ~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~ 402 (797)
-+|+|||||||||||+|||..|| .++|+|+++|+|++ ||++|+|||++|+++|+++||+++|.++||.|.+|
T Consensus 282 -----~~Id~a~IGSCTNgr~~Dl~~AA-~ilk~a~~~g~~v~--vr~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~p 353 (412)
T cd01584 282 -----LDLRVGLIGSCTNSSYEDMGRAA-SIAKQALAHGLKCK--SIFTITPGSEQIRATIERDGLLQTFRDAGGIVLAN 353 (412)
T ss_pred -----eeEEEEEEeccCCCChHHHHHHH-HHHhhHHhCCCCCC--CcEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCC
Confidence 15789999999999999966665 56699999999998 89999999999999999999999999999999999
Q ss_pred CCccccCCCCC-CchHHHhhhccCceEEEeeeccCCCCCCCC-CCccCCceecChHHHHHHhhcccc
Q 003763 403 GCTTCIGNSGD-IDDAVAAAITENDIVAAAVLSGNRNFEGRV-HPLTRANYLASPPLVVAYALAGSV 467 (797)
Q Consensus 403 gCg~CiG~~g~-l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~-g~~~~~~yLaSP~~vaAsAiaG~i 467 (797)
|||+|+|++++ ..++ ++.. ++|||+||||+||| |.....+|||||++||||||+|++
T Consensus 354 gCg~C~G~~~~~~~~~-------g~~~-~~vsT~NRNF~GR~gg~~~~~~YLaSP~~vaAsAi~G~~ 412 (412)
T cd01584 354 ACGPCIGQWDRKDIKK-------GEKN-TIVTSYNRNFTGRNDANPATHAFVASPEIVTAMAIAGTL 412 (412)
T ss_pred cccccccCCCCcccCC-------CCce-EEEEecCCCCCCCCCCCCCceEEeCCHHHHHHHHhcccC
Confidence 99999999875 2222 3321 36899999999998 455567999999999999999985
No 20
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=1.5e-112 Score=934.43 Aligned_cols=367 Identities=27% Similarity=0.430 Sum_probs=333.9
Q ss_pred HHHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCC-CCceeccc
Q 003763 3 DAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPP-GSGIVHQV 81 (797)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~p-g~GI~Hqv 81 (797)
+.|+++|.+ +++||.+ +++++||++|+++. ...|+.+++.+|.++|. ++++++ |+|||||+
T Consensus 14 ~~~~~~g~~-~v~dp~k-~~~~~DH~vp~~~~-----~~~~~~~~~r~~a~~~g-----------i~~~~~~g~GI~H~v 75 (382)
T cd01583 14 EGLREAGRE-KVWDPEK-IVAVFDHNVPTPDI-----KAAEQVKTLRKFAKEFG-----------INFFDVGRQGICHVI 75 (382)
T ss_pred HHHHHhCCc-ccCCCCc-eEEEcCCCCCCCCH-----HHHHHHHHHHHHHHHhC-----------cccccCCCCCEeeEE
Confidence 467788885 5789996 99999999999733 34455555566555543 344667 99999999
Q ss_pred ccccccceeecCCCcccC-CeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhh
Q 003763 82 NLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATD 160 (797)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakD 160 (797)
++| +|++.| +++|||||||||+||||+||||||++|++.+|+||++||++||+|+|+|+|+|++||++||
T Consensus 76 ~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~vPeti~v~l~G~l~~gV~aKD 146 (382)
T cd01583 76 LPE---------KGLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRVPETMRVNVEGKLPPGVTAKD 146 (382)
T ss_pred ecc---------ccEecCCcEEEecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeCCcEEEEEEEeecCCCcCHHH
Confidence 999 788889 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHH
Q 003763 161 LVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRA 240 (797)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~~ 240 (797)
|||+|+++|+.+|++||+|||+||||++||+++|||||||++|+||++||||+|++|++||+.++|... +
T Consensus 147 viL~ii~~lg~~g~~g~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~gi~~~De~t~~yL~~~~~~~~--~-------- 216 (382)
T cd01583 147 VILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEYLKGRGKAYW--K-------- 216 (382)
T ss_pred HHHHHHHHhccCCccceEEEEEcCccccCCHHHHhhHhccccccCceEEEecCChHHHHHHHhcCccch--h--------
Confidence 999999999999999999999999999999999999999999999999999999999999999987621 1
Q ss_pred hhhhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccCC
Q 003763 241 NKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHG 320 (797)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (797)
.+ .+|++|.|+++++||||+|||+||+|++|||++||+|+.+ .
T Consensus 217 --~~----~~D~~a~Y~~~~~iDls~leP~va~P~~P~nv~~v~e~~~--------------~----------------- 259 (382)
T cd01583 217 --EL----KSDEDAEYDKVVEIDASELEPQVAWPHSPDNVVPVSEVEG--------------I----------------- 259 (382)
T ss_pred --hc----CCCCCCCEEEEEEEEcccceeeEecCCCccceEECcccCC--------------c-----------------
Confidence 22 5899999999999999999999999999999999999873 1
Q ss_pred CcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEe
Q 003763 321 TPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIV 400 (797)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~ 400 (797)
+|+|||||||||||+|||+.||++| ||+||+|+||++|+|||++|+++|+++|++++|+++||.|.
T Consensus 260 --------~Id~v~IGSCTNgr~eDl~~AA~iL------kG~kv~~~Vr~~v~P~S~~V~~~~~~~G~~~~l~~aGa~i~ 325 (382)
T cd01583 260 --------KIDQVFIGSCTNGRLEDLRAAAEIL------KGRKVADGVRLIVVPASQRVYKQAEKEGLIEIFIEAGAEVR 325 (382)
T ss_pred --------ceeEEEEeccCCCChHHHHHHHHHh------cCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHCCCEEe
Confidence 3679999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhcccc
Q 003763 401 GYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 467 (797)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i 467 (797)
+||||+|+|+++++.. +||+ +|||+||||+||||+..+.+|||||++||||||+|+|
T Consensus 326 ~pgCg~C~G~~~g~~~-------~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~i 382 (382)
T cd01583 326 PPGCGACLGGHMGVLA-------PGER---CVSTSNRNFKGRMGSPGARIYLASPATAAASAITGEI 382 (382)
T ss_pred CCCcccccCCCCCcCC-------CCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHHHHhcccC
Confidence 9999999999877643 4665 6899999999999998889999999999999999986
No 21
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=1.7e-113 Score=966.19 Aligned_cols=418 Identities=39% Similarity=0.640 Sum_probs=338.6
Q ss_pred HHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCC-Cceecccc
Q 003763 4 AMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPG-SGIVHQVN 82 (797)
Q Consensus 4 ~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg-~GI~Hqv~ 82 (797)
.|+++|. ++++|.. +++++||++|+++.+. .|+..++.+|+++|+|++|.+++|. +.+++|+ .||||||+
T Consensus 43 ~l~~~g~--~v~~p~~-v~~~~DH~vp~~~~~~-----~~~~~~~~~n~~~~~~l~~~~~~~g-i~~~~~~~~GI~Hqv~ 113 (465)
T PF00330_consen 43 DLRAMGE--KVRDPDK-VVLVIDHSVPADDIGS-----ANLQIEDARNRERYRFLRWFAKEFG-IKFFDPGGPGICHQVL 113 (465)
T ss_dssp HHHHHCH--CCHSTTS-EEEE--SS--BSS-HH-----HHHHHHHHHCHHHHHHHHHHHHHCT-TEEEETTSSBSHHHHH
T ss_pred hHHHCCC--ceecCCC-ceEEecCccccccccc-----hhcchhhHHHHHHHHHHHHHHHHcC-CceecCCCCCeeeeee
Confidence 4667775 3679996 9999999999986642 3788889999999999999999985 5555555 49999999
Q ss_pred cccccceeecCCCcccCC-eEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhhH
Q 003763 83 LEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDL 161 (797)
Q Consensus 83 ~E~~a~~v~~~~G~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakDv 161 (797)
+| +|++.|+ ++||+||||||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||++|||
T Consensus 114 ~E---------~g~~~PG~~vvg~DSHT~t~GalGa~a~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDv 184 (465)
T PF00330_consen 114 PE---------EGLVLPGMTVVGTDSHTCTYGALGAFATGVGSTDVAAALATGPLWFRVPETVRVELTGKLPPGVTAKDV 184 (465)
T ss_dssp HH---------HTT-STTEEEEESSTTGGGGGGGTSEEEE--HHHHHHHHCTSBEEEE--EEEEEEEES---TT--HHHH
T ss_pred hh---------hccccceeEEEeCCCCcchhhhceeEEeccCHHHHHHHHHhhhhccccCceEEEEEEecCCCCccHHHH
Confidence 99 8889995 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHh
Q 003763 162 VLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRAN 241 (797)
Q Consensus 162 iL~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~~~ 241 (797)
||+|+++|+++|++||+|||+||||++||+++|||||||++|+||++||||+|++|++||+.++|.++..+..++|.+.+
T Consensus 185 iL~ii~~lg~~G~~~~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~g~~~~De~t~~Yl~~~~~~~~~~~~~~~~~~~~ 264 (465)
T PF00330_consen 185 ILHIIGRLGADGATGKAVEFFGPGVESLSMDDRMTICNMAIEMGAKTGIFPPDEKTLEYLRGRGRSPEGEELDEAYAKWQ 264 (465)
T ss_dssp HHHHHHHHHCCTTTTEEEEEESGGGGGS-HHHHHHHHHCGGHHTBSEEEE-B-HHHHHHHHHTTHHHHHHHHHHHHHHHG
T ss_pred HHHHHHhhhhhccCCeEEEEEChhhhhcCHhhhhhhhccccccCceEEEecCcHHHHHHHHhhhhhhHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999887666666666666
Q ss_pred hhhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccCCC
Q 003763 242 KMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGT 321 (797)
Q Consensus 242 ~l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 321 (797)
.|| +|+||.|+++|+||||+|+|+||+|++|+|++||+|+.+++.++.+.. . +......++|++.
T Consensus 265 ~l~-----~D~dA~Y~~~i~iDls~leP~va~P~~P~~~~~v~e~~~~~~~~~~~v-~---------~~~~~kal~y~~~ 329 (465)
T PF00330_consen 265 GLK-----SDPDAEYDKVIEIDLSELEPQVAGPHSPDNVVPVSEVAPDFASILDPV-E---------REAAEKALDYMGL 329 (465)
T ss_dssp CSS-------TT---SEEEEEEGGG-SSEEE-SSSTTSEEEHHHHHHHHHHHH--------------CCGCC-EEEECHT
T ss_pred hcc-----CCCccCeeEEEEEEcCccccccccCCCCcccccccccccccccccccc-c---------ccccccccccccc
Confidence 665 799999999999999999999999999999999999999988765421 1 1112234566543
Q ss_pred --cccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEE
Q 003763 322 --PAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHI 399 (797)
Q Consensus 322 --~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i 399 (797)
...+.+.+|++||||||||||+|||++||++|++++. ++|+|+|+++|+|||++|+++|+++||+++|+++||.|
T Consensus 330 ~~~~~~~~~~i~~~~IgSCTn~~~~dl~~aA~il~~~~~---~~v~~~v~~~v~PgS~~v~~~~~~~Gl~~~l~~aG~~v 406 (465)
T PF00330_consen 330 KPGQELEGTKIDQAFIGSCTNGRNEDLRAAAGILKGKAV---LKVAPGVKTSVVPGSRQVYEQLEREGLLEILEEAGFEV 406 (465)
T ss_dssp TEEEEEETTBEEEEEEETTTSCTHHHHHHHHHHHHHHHC---TTS-TSSEEEEE-SBHHHHHHHHHTTHHHHHHHTTEEE
T ss_pred cccccccceeeeEEEEcCCcCCCHHHHHHHHHHhhchhh---ccCcceeEEEEcCCCHHHHHHHHHcCCchhhhccceEE
Confidence 3567799999999999999999999999999977665 69999999999999999999999999999999999999
Q ss_pred eccCCccccCCCCCCchHHHhhhcc-CceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhcc
Q 003763 400 VGYGCTTCIGNSGDIDDAVAAAITE-NDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAG 465 (797)
Q Consensus 400 ~~~gCg~CiG~~g~l~~~~~~~i~~-~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG 465 (797)
.+||||+|+|+++ +.+. +.+ +++ +|||+||||+||||+..+.+|||||++||||||+|
T Consensus 407 ~~~gC~~C~G~~~-~~~~----~~~~~~~---~vst~NRNF~GR~g~~~~~~yLaSP~~vaA~Ai~G 465 (465)
T PF00330_consen 407 RGPGCGPCIGMSG-LPDV----LAPLGEV---CVSTSNRNFEGRMGPKDATVYLASPATVAASAIAG 465 (465)
T ss_dssp --SSSGGGGTSBS---CC----HCCTTEE---EEESSSS-CTTTTTTTTTEEEE--HHHHHHHHHHS
T ss_pred ecCCccEEECCCC-CCcc----cccccce---EEEecCCCCCCCCCCCcCeEEECCHHHHHHHHhcC
Confidence 9999999999985 2111 122 444 79999999999999999999999999999999998
No 22
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=2.1e-111 Score=922.74 Aligned_cols=365 Identities=35% Similarity=0.558 Sum_probs=334.8
Q ss_pred HHHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceecccc
Q 003763 3 DAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVN 82 (797)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~ 82 (797)
+.|+++|.+ ++++| . +.+++||.+|+.+ .+|.++|+|++|.+++| +|+|++||+|||||++
T Consensus 15 ~~~~~~g~~-~v~~~-~-~~~~~DH~~p~~~---------------~~~a~~~~~lr~~a~~~-gi~~~~~g~GI~H~v~ 75 (380)
T cd01585 15 LQFEAMGVD-RVRTE-L-SVSYVDHNTLQTD---------------FENADDHRFLQTVAARY-GIYFSRPGNGICHQVH 75 (380)
T ss_pred HHHHHcCCC-eeCCC-C-eEEEeCCCCCCCC---------------hHHHHHHHHHHHHHHHc-CCEEECCCCCeeeeec
Confidence 457788885 45777 4 8899999999953 24567788888888888 6999999999999999
Q ss_pred cccccceeecCCCcccC-CeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhhH
Q 003763 83 LEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDL 161 (797)
Q Consensus 83 ~E~~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakDv 161 (797)
+|+ ++.| +++|||||||||+||||+||||||++|++.+|++|++||++||+|+|+|+|+|++||++|||
T Consensus 76 ~E~----------~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~~~~vPetv~V~l~G~l~~gV~aKDv 145 (380)
T cd01585 76 LER----------FAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPMPKVVGVRLTGELPPWVTAKDV 145 (380)
T ss_pred Hhh----------ccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCeEeccCCcEEEEEEEccCCCCcCHHHH
Confidence 994 4456 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHh
Q 003763 162 VLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRAN 241 (797)
Q Consensus 162 iL~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~~~ 241 (797)
||+|++.|+.+|++||+|||+|||+++||+++|||||||++|+||+++|||+|++|++||+.+||.+++..
T Consensus 146 iL~li~~lg~~g~~~~~iEf~G~~i~~Ls~~~R~Tl~NMa~E~GA~~gi~~~De~t~~yl~~~gr~~~~~~--------- 216 (380)
T cd01585 146 ILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDERTREFLAAQGREDDWVE--------- 216 (380)
T ss_pred HHHHHHHhCcccccceEEEEeCCcccccCHHHHhhhhccccccCceEEEecCcHHHHHHHHhcCCchhccc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999988654311
Q ss_pred hhhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccCCC
Q 003763 242 KMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGT 321 (797)
Q Consensus 242 ~l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 321 (797)
..+|++|.|+++++||||+|||+||+|++|+|++||+|+.+ .
T Consensus 217 ------l~~D~~a~Y~~~i~iDls~leP~va~P~~pd~v~pv~~~~g--------------~------------------ 258 (380)
T cd01585 217 ------LAADADAEYDEEIEIDLSELEPLIARPHSPDNVVPVREVAG--------------I------------------ 258 (380)
T ss_pred ------cCCCCCCceEEEEEEEcccceeeecCCCCCCceeEhhhhCC--------------c------------------
Confidence 14899999999999999999999999999999999999863 1
Q ss_pred cccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEec
Q 003763 322 PAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVG 401 (797)
Q Consensus 322 ~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~ 401 (797)
+|+|||||||||||+|||++||++| ||+||+|+||++|+|||++|+++|+++|++++|+++||.|.+
T Consensus 259 -------~Id~~~IGSCTngr~eDl~~aA~iL------kG~kv~~~V~~~v~P~S~~V~~~a~~~Gl~~~l~~aGa~i~~ 325 (380)
T cd01585 259 -------KVDQVAIGSCTNSSYEDLMTVAAIL------KGRRVHPHVSMVVAPGSKQVLEMLARNGALADLLAAGARILE 325 (380)
T ss_pred -------eEEEEEEecCCCCCcHHHHHHHHHH------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeC
Confidence 3679999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhcccc
Q 003763 402 YGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 467 (797)
Q Consensus 402 ~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i 467 (797)
||||+|+|+++.+ + ++++ +|||+||||+||||+..+.+|||||++||||||+|+|
T Consensus 326 pgCg~C~G~~~~~-~-------~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vaAsAi~G~i 380 (380)
T cd01585 326 SACGPCIGMGQAP-P-------TGGV---SVRTFNRNFEGRSGTKDDLVYLASPEVAAAAALTGVI 380 (380)
T ss_pred CCceeccCCCCCC-C-------CCcE---EEEccCCCCCccCCCCCCcEEeCCHHHHHHHHhCccC
Confidence 9999999997653 2 3565 7899999999999988888999999999999999986
No 23
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=3.3e-110 Score=921.35 Aligned_cols=368 Identities=28% Similarity=0.456 Sum_probs=336.8
Q ss_pred HHHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcce-eeCCCCceeccc
Q 003763 3 DAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNML-VVPPGSGIVHQV 81 (797)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~-~~~pg~GI~Hqv 81 (797)
+.|+++|.+ ++++|.+ +.+++||.+|+.+. ..+..++.+++|+|++ ++. |++||+|||||+
T Consensus 40 ~~~~~~g~~-~v~~P~~-v~~~~DH~~p~~~~--~~a~~~~~~r~fa~~~--------------gi~~~~~~g~GI~H~v 101 (412)
T TIGR01343 40 RRLEEYGID-KVFDPER-IVIVVDHVVPASTI--KAAEMQKLAREFVKKT--------------GIKHFFDVGEGICHQV 101 (412)
T ss_pred HHHHHcCCC-cCCCCCc-EEEEcCCCCCCCCh--hHHHHHHHHHHHHHHc--------------CCceeecCCCCEEEEE
Confidence 467777774 5799996 99999999999765 3455778888888752 454 789999999999
Q ss_pred ccccccceeecCCCcccC-CeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhh
Q 003763 82 NLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATD 160 (797)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakD 160 (797)
++| +|++.| +++|||||||||+||||+||||||++|++.+|++|++||++||+|+|+|+|+|++||++||
T Consensus 102 ~~E---------~g~~~PG~~iig~DSHT~t~GalGa~a~GvG~td~a~~~atg~~w~~vPe~i~v~l~G~l~~gV~akD 172 (412)
T TIGR01343 102 LPE---------EGLVKPGDLVVGADSHTCTYGALGAFATGMGSTDIAYAIATGKTWFRVPESMKVTLTGKLNPGVTAKD 172 (412)
T ss_pred chh---------hCcCCCCcEEEecCCCcCCcCchhheeecccHHHHHHHHhcCcEeecCCcEEEEEEEcccCCCcCHHH
Confidence 999 889999 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHH
Q 003763 161 LVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRA 240 (797)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~~ 240 (797)
|||+|+++|+.+|++||+|||+|||+++||+++|||||||++|+||+++|||+|++|++||+.++|.+..
T Consensus 173 viL~li~~~g~~g~~~~~vEf~G~~i~~Ls~~~R~ti~NMa~E~GA~~~i~~~De~t~~yl~~~~~~~~~---------- 242 (412)
T TIGR01343 173 VILEVIGQIGVDGATYMAMEFHGETIKNMTMEERMTLANMAIEAGGKTGIIEPDEKTRAYLKERYKEPFR---------- 242 (412)
T ss_pred HHHHHHHHhCcCCcceEEEEEECCcccccCHHHHhhhhccccccCceeeEecCcHHHHHHHHhhCccccc----------
Confidence 9999999999999999999999999999999999999999999999999999999999999998764311
Q ss_pred hhhhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccCC
Q 003763 241 NKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHG 320 (797)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (797)
.+ .+|++|.|+++++||||+|||+||+|++|+|++||+++.+ .
T Consensus 243 --~~----~~D~da~Y~~~i~iDls~leP~va~P~~Pdnv~~v~~~~g--------------~----------------- 285 (412)
T TIGR01343 243 --VY----KSDEDAEYAKEVEIDASQLEPVVAAPHNVDNVHPVSEVEG--------------I----------------- 285 (412)
T ss_pred --cc----CCCCCCCEEEEEEEEcccceeeEecCCCCCcEEEhHHhCC--------------C-----------------
Confidence 12 5899999999999999999999999999999999999763 1
Q ss_pred CcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEe
Q 003763 321 TPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIV 400 (797)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~ 400 (797)
+|+|||||||||||++||+.||++| +|+||+|+||++|+|||++|+++|+++|++++|.++||.|.
T Consensus 286 --------~id~~~IGSCTngr~~Dl~~aA~il------~G~kv~~~v~~~v~P~S~~V~~~~~~~G~~~~l~~aG~~i~ 351 (412)
T TIGR01343 286 --------EVDQVFIGSCTNGRIEDLRVAAKIL------KGRKVAPDVRLIVIPASRAVYLQALKEGLIEIFVKAGAVVS 351 (412)
T ss_pred --------eeeEEEEecCCCCChHHHHHHHHHH------cCCCCCCCCCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEc
Confidence 3679999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhccccc
Q 003763 401 GYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 468 (797)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i~ 468 (797)
+||||+|+|++.+++++ |++ +|||+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 352 ~pgCg~C~G~~~g~l~~-------ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~it 409 (412)
T TIGR01343 352 TPGCGPCLGRHQGVLAP-------GEV---CISTSNRNFKGRMGDPNAEIYLASPATAAASAVKGRIA 409 (412)
T ss_pred CCccccccCcCCCcCCC-------CCE---EEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhCcccC
Confidence 99999999997554333 565 68999999999999888889999999999999999994
No 24
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-110 Score=891.74 Aligned_cols=372 Identities=30% Similarity=0.468 Sum_probs=334.5
Q ss_pred HHHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCC-Cceeccc
Q 003763 3 DAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPG-SGIVHQV 81 (797)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg-~GI~Hqv 81 (797)
+.|+++|. ++++|.+ +.+++||++|+++.. .+.+++.+++|.+. | ++ +.|++.| +||||||
T Consensus 44 ~~lr~~g~--kV~~p~k-~~~~~DH~vPt~~~~--~a~~~~~lr~~~ke---~-----Gi-----~~~~~~g~~GI~H~v 105 (423)
T COG0065 44 EGLREAGR--KVRDPEK-TVATFDHNVPTPDIK--AAEQQKELRENAKE---F-----GI-----VNFYDVGDQGIVHQV 105 (423)
T ss_pred HHHHHhCC--cccCccc-eEEEecCCCCCccHH--HHHHHHHHHHHHHH---h-----CC-----eeeecCCCCcEEEEE
Confidence 45777787 6799996 999999999998654 34455555555553 2 22 4567788 9999999
Q ss_pred ccccccceeecCCCcccC-CeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhh
Q 003763 82 NLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATD 160 (797)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakD 160 (797)
.+| +|++.| ++|||+||||||+||||+||+|+|+||++.+|++|++|+++||+++|+++|+|++||||||
T Consensus 106 ~pE---------~G~~~PG~~Iv~gDSHT~T~GAfGAfA~GiGttdva~vlatg~lw~~vpktm~v~v~G~l~~gV~aKD 176 (423)
T COG0065 106 GPE---------QGLTLPGMTIVGGDSHTCTHGAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKD 176 (423)
T ss_pred ecc---------ccccCCCcEEEecccCcccchhhhhhhccccHHHHHHHHHhCceeeeccceEEEEEecccCCCccHHH
Confidence 999 999999 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHH
Q 003763 161 LVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRA 240 (797)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~~ 240 (797)
|||+|+++++.+|++|+++||+|+.+++|||++|||||||++|+||++|+|+||++|++||+... ++
T Consensus 177 iiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme~RmTicNMaIE~GAkaGii~pDe~T~~Y~k~~~-------------~a 243 (423)
T COG0065 177 IILALIGKIGVDGGTGYAIEFAGEAIRSLSMEGRMTLCNMAIEAGAKAGIIAPDETTFEYLKEWD-------------GA 243 (423)
T ss_pred HHHHHHHHhccCCcceEEEEEeccchhhCChhhhhhhhhhhhhhcccceeeCCcHhHHHHHHHHh-------------cc
Confidence 99999999999999999999999999999999999999999999999999999999999999422 22
Q ss_pred hhhhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccCC
Q 003763 241 NKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHG 320 (797)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (797)
...|+.. .+|+||.|+++|+||+|+|+|+||||++|+|+++|+++.++.
T Consensus 244 ~~~~~~l-~sD~dA~y~~~v~~d~s~leP~Va~p~~p~nv~~v~e~~~~~------------------------------ 292 (423)
T COG0065 244 VAYWKTL-KSDEDAVYDKVVELDASDLEPQVAWPTNPDNVVPVSEVEPDP------------------------------ 292 (423)
T ss_pred cccccee-cCCCCCceeEEEEEEcccCCceeeCCCCcccceecccccCCc------------------------------
Confidence 2345433 689999999999999999999999999999999999987421
Q ss_pred CcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEe
Q 003763 321 TPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIV 400 (797)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~ 400 (797)
-+|+|+|||||||||++||++||++| ||+||+++||++|+|||+.|+++++++||+++|.+|||.|.
T Consensus 293 -------i~iDqVFIGSCTNgRieDLr~AA~Il------kgrkva~~Vr~iVvP~S~~V~~qA~~eGl~~if~~AG~~~~ 359 (423)
T COG0065 293 -------IKIDQVFIGSCTNGRIEDLRAAAEIL------KGRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWR 359 (423)
T ss_pred -------eeeceEEEeccCCccHHHHHHHHHHh------ccCccCCCceEEEecCcHHHHHHHHHccHHHHHHhcCcEEc
Confidence 13679999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhccccc
Q 003763 401 GYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 468 (797)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i~ 468 (797)
.||||||+|++.+++++ ||+ |+||+||||+||||+..+.+||+||+++||+||+|+|+
T Consensus 360 ~pgCg~CLg~~~gvL~~-------gE~---c~STSNRNF~GRqG~~~a~~~L~SPA~AAAaAv~G~i~ 417 (423)
T COG0065 360 EPGCGPCLGMHPGVLGP-------GER---CASTSNRNFEGRQGSPGARTYLASPAMAAAAAVEGEIV 417 (423)
T ss_pred CCCCccccccCCCcCCC-------CCE---EeeccCCCCCccCCCCCCeEEecCHHHHHHHHhhCEec
Confidence 99999999999777655 554 68999999999999777889999999999999999994
No 25
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=1.8e-109 Score=915.54 Aligned_cols=367 Identities=28% Similarity=0.444 Sum_probs=336.9
Q ss_pred HHHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceecccc
Q 003763 3 DAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVN 82 (797)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~ 82 (797)
+.|+++| .++++|.+ +.+++||++|+.+. ..+..++..++|.++. ++.+++||+|||||++
T Consensus 41 ~~~~~~g--~~v~~p~~-~~~~~DH~~p~~~~--~~a~~~~~~r~fa~~~--------------gi~~~~~g~GI~H~v~ 101 (412)
T TIGR02086 41 ETLRELG--ARVEDPEK-IVIFFDHVVPPPTV--EAANRQKEIREFAKEH--------------GIPVFDVGEGICHQVL 101 (412)
T ss_pred HHHHHcC--CcccCCCC-EEEECCCCCCCCCH--HHHHHHHHHHHHHHHc--------------CCcEECCCCCeEeEEh
Confidence 4577777 56899997 99999999999865 3444667777777642 5777899999999999
Q ss_pred cccccceeecCCCcccC-CeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhhH
Q 003763 83 LEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDL 161 (797)
Q Consensus 83 ~E~~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakDv 161 (797)
+| +|+++| +++||+||||||+||||+||||||++|++.+|++|++|+++||+|+|+|+|+|++||++|||
T Consensus 102 ~E---------~G~~~PG~~iig~DSHT~t~GalGa~a~GvG~td~a~~latg~~~~~vPeti~v~l~G~l~~gV~aKDv 172 (412)
T TIGR02086 102 VE---------EGYAGPGMVVVGGDSHTCTSGAVGAFATGMGATDVAIALATGKTWLKVPESIKVVVEGKPEEGVTAKDV 172 (412)
T ss_pred hh---------cCccCCCcEEEecCCCccccchhhheeecccHHHHHHHHhcCCchhcCCCEEEEEEEccCCCCcCHHHH
Confidence 99 889999 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHh
Q 003763 162 VLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRAN 241 (797)
Q Consensus 162 iL~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~~~ 241 (797)
||+|++.|+.+|++||+|||+|+|+++||+++|||||||++|+||+++|||+|++|++||+.++|.+.
T Consensus 173 iL~li~~lg~~g~~~~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D~~t~~yl~~~~~~~~------------ 240 (412)
T TIGR02086 173 ALHIVGELGADGATYMAIEFFGLPIEAMSMDERMTLCNMAVEAGAKAGIVVPDEETYEYLKKRRGYEF------------ 240 (412)
T ss_pred HHHHHHHhCcCccceeEEEEECccccccCHHHHhhhhhcccccCceeeEecCCHHHHHHHHhcCCccc------------
Confidence 99999999999999999999999999999999999999999999999999999999999999987541
Q ss_pred hhhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccCCC
Q 003763 242 KMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGT 321 (797)
Q Consensus 242 ~l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 321 (797)
..| .+|++|.|+++++||||+|||+||+|++|+|++|++++.+ .
T Consensus 241 ~~~----~~D~~a~Y~~~i~iDls~leP~va~P~~P~nv~~v~~~~~--------------~------------------ 284 (412)
T TIGR02086 241 RIL----RPDPGAKYDDEIEIDLSDLEPLVAVPHSVDNVRPVSDVEG--------------T------------------ 284 (412)
T ss_pred ccc----cCCCCCCEEEEEEEEccceeEEecCCCChHhcccchhhcc--------------c------------------
Confidence 122 5899999999999999999999999999999999999863 1
Q ss_pred cccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEec
Q 003763 322 PAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVG 401 (797)
Q Consensus 322 ~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~ 401 (797)
+|++||||||||||++||+.||++| ||+||+|+||++|+|||++|+++|+++|++++|.++||.|.+
T Consensus 285 -------~id~~~IGSCTngr~~Dl~~aA~vL------kG~kv~~~v~~~v~P~S~~v~~~~~~~G~~~~~~~aGa~i~~ 351 (412)
T TIGR02086 285 -------EIDQVFIGSCTNGRIEDLRIAAEIL------EGRRVHPDVRLIVVPASRKVYERALEEGIILTLIRAGAIICP 351 (412)
T ss_pred -------ceeEEEEeccCCCChHHHHHHHHHH------cCCCCCCCcCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcC
Confidence 3579999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhccccc
Q 003763 402 YGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 468 (797)
Q Consensus 402 ~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i~ 468 (797)
||||+|+|++.++.. +|++ +|||+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 352 pgCg~C~G~~~g~~~-------~ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~aAAsAi~G~it 408 (412)
T TIGR02086 352 PGCGPCLGRHMGVLG-------DGEV---CVSTTNRNFRGRMGSPDAEIYLASPATAAASAVEGYIT 408 (412)
T ss_pred CccccccCcCCCcCC-------CCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHHHHhCCccC
Confidence 999999999866543 3665 68999999999999888889999999999999999994
No 26
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=3.3e-109 Score=914.79 Aligned_cols=368 Identities=31% Similarity=0.476 Sum_probs=335.2
Q ss_pred HHHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcce-eeCCCCceeccc
Q 003763 3 DAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNML-VVPPGSGIVHQV 81 (797)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~-~~~pg~GI~Hqv 81 (797)
+.|+++|.+ ++++|.+ +.+++||++|+.+. ..+..++..++|.|+. +++ |+++|+|||||+
T Consensus 43 ~~~~~~g~~-~v~~P~~-~~~~~DH~~p~~~~--~~a~~~~~~r~fa~~~--------------gi~~~~~~g~GI~H~v 104 (418)
T PRK00402 43 KEFEKIGGD-KVFDPSK-IVIVFDHFVPAKDI--KSAEQQKILREFAKEQ--------------GIPNFFDVGEGICHQV 104 (418)
T ss_pred HHHHHcCCC-ccCCCCc-EEEECCCCCCCCCh--hhHHHHHHHHHHHHHc--------------CCcceeCCCCCEeeEe
Confidence 346666775 5799996 99999999999864 3455778888887742 454 788999999999
Q ss_pred ccccccceeecCCCcccC-CeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhh
Q 003763 82 NLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATD 160 (797)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakD 160 (797)
++| +|+++| +++|||||||||+||||+||||||++|++.+|++|++|+++||+|+|+|+|+|++||++||
T Consensus 105 ~~E---------~g~~~PG~~ivg~DSHT~t~GalG~~a~GvG~td~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~akD 175 (418)
T PRK00402 105 LPE---------KGLVRPGDVVVGADSHTCTYGALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKLPPGVTAKD 175 (418)
T ss_pred hhh---------cCccCCCcEEEeCCCCccccCccceEEecccHHHHHHHHhcCcEEEcCCCEEEEEEEeecCCCcCHHH
Confidence 999 788999 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHH
Q 003763 161 LVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRA 240 (797)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~~ 240 (797)
|||+|+++|+.+|++||+|||+|||+++||+++|||||||++|+||+++|||+|++|++||+.+++.+ +
T Consensus 176 viL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NM~~E~GA~~~i~~~D~~t~~yl~~~~~~~-~---------- 244 (418)
T PRK00402 176 VILHIIGDIGVDGATYKALEFTGETIEALSMDERMTLANMAIEAGAKAGIFAPDEKTLEYLKERAGRD-Y---------- 244 (418)
T ss_pred HHHHHHHHhCcCccceEEEEEECCccccCCHHHHhhhhhcccccCceeeEecCChHHHHHHHhhcccc-c----------
Confidence 99999999999999999999999999999999999999999999999999999999999999985332 1
Q ss_pred hhhhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccCC
Q 003763 241 NKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHG 320 (797)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (797)
.| ..+|++|.|+++++||||+|||+||+|++|||++||+|+++ .
T Consensus 245 --~~---l~~D~~a~Y~~~i~iDls~leP~va~P~~Pdnv~~v~~~~g--------------~----------------- 288 (418)
T PRK00402 245 --KP---WKSDEDAEYEEVYEIDLSKLEPQVAAPHLPDNVKPVSEVEG--------------T----------------- 288 (418)
T ss_pred --cc---ccCCCCCCEEEEEEEEcccceeeeecCCCccceeEchhhCC--------------c-----------------
Confidence 11 15899999999999999999999999999999999999863 1
Q ss_pred CcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEe
Q 003763 321 TPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIV 400 (797)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~ 400 (797)
+|+|||||||||||+|||++||++| ||+||+|+||++|+|||++|+++|+++|++++|+++||.|.
T Consensus 289 --------~id~~~IGSCTngr~eDl~~aA~il------~G~kv~~~V~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~ 354 (418)
T PRK00402 289 --------KVDQVFIGSCTNGRLEDLRIAAEIL------KGRKVAPGVRLIVIPASQKIYLQALKEGLIEIFVDAGAVVS 354 (418)
T ss_pred --------eeeEEEEecCCCCChHHHHHHHHHH------cCCCCCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEc
Confidence 3679999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhccccc
Q 003763 401 GYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 468 (797)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i~ 468 (797)
+||||+|+|++.+..++ |++ +|||+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 355 ~pgCg~C~G~~~g~~~~-------ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsAl~G~it 412 (418)
T PRK00402 355 TPTCGPCLGGHMGVLAP-------GEV---CLSTTNRNFKGRMGSPESEVYLASPAVAAASAVTGKIT 412 (418)
T ss_pred CCccccccCcCCCcCCC-------CCE---EEEecCCCCCCCCCCCCCeEEECCHHHHHHHHhCCeeC
Confidence 99999999987654433 564 68999999999999888889999999999999999994
No 27
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=7.8e-109 Score=909.72 Aligned_cols=370 Identities=32% Similarity=0.488 Sum_probs=335.0
Q ss_pred HHHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcce-eeCCCC-ceecc
Q 003763 3 DAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNML-VVPPGS-GIVHQ 80 (797)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~-~~~pg~-GI~Hq 80 (797)
+.|+++|. ++++||.+ |.+++||++|+.+. ..+..++.+++|.|++ +|+ |+++|+ |||||
T Consensus 42 ~~f~~~g~-~~V~dp~~-v~~~~DH~vpa~~~--~~a~~~~~~r~fa~~~--------------gi~~f~d~g~~GI~H~ 103 (419)
T TIGR02083 42 KAFKEYGG-KKVFDPDR-VALVPDHFTPNKDI--KSAEQCKMMREFAREQ--------------GIEKFFEIGNMGIEHA 103 (419)
T ss_pred HHHHHcCC-CcCCCCCC-EEEEeCCCCCCCCH--HHHHHHHHHHHHHHHc--------------CCcceecCCCcceeee
Confidence 45777776 46899996 99999999999854 4566788888888853 353 577885 99999
Q ss_pred cccccccceeecCCCcccC-CeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchh
Q 003763 81 VNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTAT 159 (797)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtak 159 (797)
+++| +|+++| +++||+||||||+||||+||||||++|++.+|++|++||+|||+|+|+|+|+|++||++|
T Consensus 104 v~~E---------~g~~~PG~~ivg~DSHT~t~Ga~Ga~a~GvG~td~a~~latg~~w~~vPetv~v~l~G~l~~gV~aK 174 (419)
T TIGR02083 104 LLPE---------EGIVKPGDLIIGADSHTCTYGALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKLKPWVTGK 174 (419)
T ss_pred eccc---------cCccCCCeEEEecCCCccccCccceeEEccChHHHHHHHhcCCeeecCCCEEEEEEEeecCCCcCHH
Confidence 9999 899999 589999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHH
Q 003763 160 DLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLR 239 (797)
Q Consensus 160 DviL~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~ 239 (797)
||||+|++.|+.+|++||+|||+|||+++||+++|||||||++|+||+++|||+|++|++||+.+++.+ .+
T Consensus 175 DviL~l~~~lg~~G~~~~~iEf~G~~v~~ls~~~R~Tl~NMa~E~GA~~~i~~~D~~t~~yL~~r~~~~--~~------- 245 (419)
T TIGR02083 175 DLILHIIGIIGVDGALYKSMEFSGEGLKELSMDDRFTIANMAIEAGAKTGIFPVDEITIEYEKGRGKRE--EK------- 245 (419)
T ss_pred HHHHHHHHHhCcCCccceEEEEECCccccCCHHHHhhhhhcccccCceeeEecCChHHHHHHhhCCccc--hh-------
Confidence 999999999999999999999999999999999999999999999999999999999999999765432 11
Q ss_pred HhhhhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccC
Q 003763 240 ANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFH 319 (797)
Q Consensus 240 ~~~l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (797)
.+ .+|++|.|+++++||||+|||+||+|++|+|++||+|++.. |
T Consensus 246 ---~~----~~D~dA~Y~~~~~iDls~leP~va~P~~pdnv~~v~e~~~~------------g----------------- 289 (419)
T TIGR02083 246 ---IY----KADEDAKYVRVIEIDLSELEPQVAFPHLPENTKDISEAGKE------------E----------------- 289 (419)
T ss_pred ---cc----cCCCCCCEEEEEEEEccccceeecCCCCcccCcChhhcccc------------c-----------------
Confidence 22 58999999999999999999999999999999999998620 1
Q ss_pred CCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEE
Q 003763 320 GTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHI 399 (797)
Q Consensus 320 g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i 399 (797)
-+|+|||||||||||++||++||++| +|+||+++||++|+|||++|+++|+++|++++|.++||.|
T Consensus 290 --------~~id~v~IGSCTngr~eDl~~AA~iL------kG~kv~~~vr~~v~P~S~~v~~~a~~~G~~~~l~~aGa~i 355 (419)
T TIGR02083 290 --------IKIDQVVIGSCTNGRLEDLRLAAEIL------KGKTVAPDVRCIIIPGSQNVYLEAMKEGLLEIFIEAGAVV 355 (419)
T ss_pred --------CccCeEEEEcCCCCChHHHHHHHHHH------cCCCCCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEE
Confidence 13679999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred eccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhccccc
Q 003763 400 VGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 468 (797)
Q Consensus 400 ~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i~ 468 (797)
.+||||+|+|++.++.++ +++ +|||+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 356 ~~pgCg~C~G~~~g~l~~-------ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~it 414 (419)
T TIGR02083 356 STPTCGPCLGGHMGILAE-------GER---AISTTNRNFVGRMGHPKSEVYLASPAVAAASAIKGYIA 414 (419)
T ss_pred cCCccccccCcCCCcCCC-------CCE---EEEecCCCCCccCCCCCCeEEECCHHHHHHHHhCCCcC
Confidence 999999999988554433 554 78999999999999766789999999999999999994
No 28
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=1.6e-103 Score=854.22 Aligned_cols=347 Identities=31% Similarity=0.496 Sum_probs=311.5
Q ss_pred HHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceecccccc
Q 003763 5 MNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLE 84 (797)
Q Consensus 5 ~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~~E 84 (797)
+.++|. +++++|.+ +.+++||.+|+.... .+..++.+|+|+|. | +++|++||+|||||+++|
T Consensus 15 ~~~~g~-~~v~~p~~-~~~~~DH~vp~~~~~--~~~~~~~lr~~ak~-------------~-gi~~~~~g~GI~Hqv~~E 76 (363)
T cd01582 15 FMSIGA-TKIHNPDQ-IVMTLDHDVQNKSEK--NLKKYKNIESFAKK-------------H-GIDFYPAGRGIGHQIMIE 76 (363)
T ss_pred HHHcCC-CccCCCCC-EEEEcCCCCCCCCHH--HHHHHHHHHHHHHH-------------h-CCeEECCCCCEEEEeccc
Confidence 456676 46899996 999999999998653 34566666766664 2 578899999999999999
Q ss_pred cccceeecCCCcccCC-eEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhhHHH
Q 003763 85 YLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVL 163 (797)
Q Consensus 85 ~~a~~v~~~~G~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakDviL 163 (797)
+|+++|+ ++|||||||||+||||+||||||++|++.+|+++++|+++||+|+|+|+|+|++||++|||||
T Consensus 77 ---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~~~tG~~w~~vPe~i~v~l~G~l~~gV~aKDviL 147 (363)
T cd01582 77 ---------EGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIPPVAKVELKGQLPKGVTGKDVIV 147 (363)
T ss_pred ---------cCccCCCeEEEecCCCccccccchheEeccCHHHHHHHHHhCCeeecCCCEEEEEEecccCCCCCHHHHHH
Confidence 8899996 679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHhhh
Q 003763 164 TVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKM 243 (797)
Q Consensus 164 ~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~~~~l 243 (797)
+|+++|+.+|++||+|||+|||+++||+++|||||||++|+||+++|||+|
T Consensus 148 ~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D----------------------------- 198 (363)
T cd01582 148 ALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTD----------------------------- 198 (363)
T ss_pred HHHHHhCcCCceeEEEEEECCccccCCHHHHhhHHhcccccCcceeEeccC-----------------------------
Confidence 999999999999999999999999999999999999999999999999988
Q ss_pred hcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccCCCcc
Q 003763 244 FVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPA 323 (797)
Q Consensus 244 ~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 323 (797)
+++++||||+|||+||+|++|+|++|+++++.. +
T Consensus 199 -------------~~~~~iDls~leP~va~P~~p~~~~~~~~~~~~------------~--------------------- 232 (363)
T cd01582 199 -------------AKHLILDLSTLSPYVSGPNSVKVSTPLKELEAQ------------N--------------------- 232 (363)
T ss_pred -------------ceEEEEEcccceeeeeCCCCCCCcCCHHHhhhc------------C---------------------
Confidence 347999999999999999999999999997520 1
Q ss_pred cccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCC-CccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEecc
Q 003763 324 QLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELG-LEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGY 402 (797)
Q Consensus 324 ~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G-~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~ 402 (797)
-+|++||||||||||++||+.||++|.++..++| ++|+||||++|+|||++|+++|+++|++++|.++||.|.+|
T Consensus 233 ----~~id~~~IGSCTngr~~Dl~~aA~il~gk~~~~~~~~v~~~Vr~~v~PgS~~V~~~a~~~Gl~~~l~~aGa~i~~p 308 (363)
T cd01582 233 ----IKINKAYLVSCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYVAAASSEVQAAAEKNGDWQTLLEAGATPLPA 308 (363)
T ss_pred ----ceEeEEEEEcCCCCChHHHHHHHHHHhCccccccCcccCCCceEEEeCCCHHHHHHHHHcCcHHHHHHCCCEEECC
Confidence 1367999999999999999999999933222222 23999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhcccc
Q 003763 403 GCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 467 (797)
Q Consensus 403 gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i 467 (797)
|||+|+|+++++.++ +|+ +|||+||||+||||+..+.+|||||++||||||+|+|
T Consensus 309 gCg~C~G~~~~~~~~-------ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~i 363 (363)
T cd01582 309 GCGPCIGLGQGLLEP-------GEV---GISATNRNFKGRMGSTEALAYLASPAVVAASAISGKI 363 (363)
T ss_pred CCeeccCCCCCCCCC-------CCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHHHHhCccC
Confidence 999999999886544 565 5899999999999998889999999999999999986
No 29
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=7.3e-101 Score=850.01 Aligned_cols=367 Identities=24% Similarity=0.372 Sum_probs=323.8
Q ss_pred HHHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceecccc
Q 003763 3 DAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVN 82 (797)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~ 82 (797)
+.|+++|. ++|||.+ +.+++||.+|+.+. ..+..++.+|+|.+++ +++|++||+|||||++
T Consensus 40 ~~f~~~~~--~v~d~~~-~v~~~DH~~p~~~~--~~a~~~~~~r~fa~~~--------------gi~~~~~g~GI~Hqv~ 100 (436)
T cd01581 40 DELKELAC--LGFSADL-VMQSFCHTAAYPKP--VDVKTHRTLPDFISNR--------------GGVALRPGDGVIHSWL 100 (436)
T ss_pred HHHHHcCC--cccCCcc-EEEEcCCCCCCCCH--HHHHHHHHHHHHHHHc--------------CCcEECCCCCeeeeee
Confidence 46778765 5799996 99999999999755 3455788899999963 3678999999999998
Q ss_pred cccccceeecCCCcccCC-eEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhhH
Q 003763 83 LEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDL 161 (797)
Q Consensus 83 ~E~~a~~v~~~~G~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakDv 161 (797)
.| +++|+ ++|||||||||+|| ||||+|++|++.+|++|++||++||+|+|+|+|+|++||++|||
T Consensus 101 ~e-----------~~~PG~~ivGtDSHT~t~ga---~a~GvG~td~a~~latG~~w~~vPeti~V~l~G~l~~gV~aKDv 166 (436)
T cd01581 101 NR-----------MLLPDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDL 166 (436)
T ss_pred hh-----------hccCCceEEeeccccCCCCc---eEEeecHHHHHHHHHhCeeeeeCCCEEEEEEecccCCCcChhHH
Confidence 87 35775 57999999999986 89999999999999999999999999999999999999999999
Q ss_pred HHHHH----HH--------HHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHH-HHHHhhc----
Q 003763 162 VLTVT----QM--------LRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVT-LQYLKLT---- 224 (797)
Q Consensus 162 iL~i~----~~--------l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t-~~yl~~~---- 224 (797)
||+|+ ++ ++.+|++||+|||. |+++||+++|||||||++|+|||+||||+|++| ++||+.+
T Consensus 167 iL~i~~~li~~g~l~v~~~~g~~g~~g~~iEf~--Gv~~Ls~~~R~Ti~NMa~E~GA~~gif~~De~t~~~yL~~~~~~~ 244 (436)
T cd01581 167 VNAIPYYAIQQGLLTVEKKGKKNVFNGRILEIE--GLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVLM 244 (436)
T ss_pred HHHHHHHHHhcccccccccCCcccccceEEEEC--CcccCCHhHHHHHHhhhhhhCceEEEecCCHhHHHHHHHhCcccc
Confidence 99864 44 44456799999996 599999999999999999999999999999988 8999997
Q ss_pred ------CCCc-----hhHHHHHHHHHHhhhhcccCCCCCCCcccEEEEEEcCCc-ccCccCCCCCCCccccCcccchhhh
Q 003763 225 ------GRSD-----DTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHA 292 (797)
Q Consensus 225 ------gr~~-----~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~l-eP~VA~P~~P~~~~~v~e~~~~~~~ 292 (797)
||.+ .+.+.++.|.+.+.+| .+|++|.|+++++||||+| ||+||+|++|||++|++|+.+
T Consensus 245 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~D~da~Y~~~ieiDls~l~eP~VA~P~~pdn~~~v~e~~g---- 316 (436)
T cd01581 245 KIMIANGYDDARTLLRRIIAMEEWLANPPLL----EPDADAEYAAVIEIDLDDIKEPILACPNDPDDVKLLSEVAG---- 316 (436)
T ss_pred ccccccCcccccchhHHHHHHHHHHhhcccc----cCCCCCceEEEEEEEhHhCCCCeecCCCChhhceEhHHhcC----
Confidence 5532 2345667787777776 5899999999999999999 999999999999999999863
Q ss_pred hhcccccCCCccCccccccccceeccCCCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEE
Q 003763 293 CLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSL 372 (797)
Q Consensus 293 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v 372 (797)
. +|+++||||||| |++||+.||.+| ||+|+ +.||++|
T Consensus 317 ----------~-------------------------~id~~~IGSCTn-r~eDl~~AA~il------kg~~~-~~vr~~v 353 (436)
T cd01581 317 ----------K-------------------------KIDEVFIGSCMT-NIGHFRAAAKIL------RGKEF-KPTRLWV 353 (436)
T ss_pred ----------C-------------------------ccceEEEecCCC-CHHHHHHHHHHH------cCCCC-CCCCEEE
Confidence 1 356899999999 999999999999 89996 4599999
Q ss_pred ecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCcee
Q 003763 373 APGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYL 452 (797)
Q Consensus 373 ~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yL 452 (797)
+|||++|+++|+++|++++|+++||.|.+||||+|+|+++.+ .+|++ +|||+||||+||||+ .+.+||
T Consensus 354 ~P~S~~V~~~~~~~G~~~~l~~aGa~v~~pgCg~C~G~~~~~--------~~gev---~vsT~NRNF~GRmG~-~~~~yL 421 (436)
T cd01581 354 APPTRMDWAILQEEGYYSIFGDAGARTEMPGCSLCMGNQARV--------ADGAT---VFSTSTRNFDNRVGK-GAEVYL 421 (436)
T ss_pred ECCCHHHHHHHHHcChHHHHHHcCCEECCCccccccCcCCcC--------CCCCE---EEEecCCCCCCCCCC-CCcEEE
Confidence 999999999999999999999999999999999999985443 34676 789999999999999 668999
Q ss_pred cChHHHHHHhhcccc
Q 003763 453 ASPPLVVAYALAGSV 467 (797)
Q Consensus 453 aSP~~vaAsAiaG~i 467 (797)
|||++||||||+|+|
T Consensus 422 aSP~~vAAsAi~G~i 436 (436)
T cd01581 422 GSAELAAVCALLGRI 436 (436)
T ss_pred CCHHHHHHHHhCccC
Confidence 999999999999986
No 30
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=1.3e-97 Score=822.76 Aligned_cols=375 Identities=38% Similarity=0.596 Sum_probs=338.6
Q ss_pred HHHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceecccc
Q 003763 3 DAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVN 82 (797)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~ 82 (797)
+.|+++|.+.++++|. +|++++||++|+++ .+|.++|+|++|.+++|. ++|+++|+|||||++
T Consensus 14 ~~~~~~~~~~~v~~p~-~v~~~~DH~~p~~~---------------~~~~~~~~~lr~f~~~~g-i~~~~~g~Gi~H~~~ 76 (389)
T cd01351 14 KAFEILAALGKVADPS-QIACVHDHAVQLEK---------------PVNNEGHKFLSFFAALQG-IAFYRPGVGIIHQIM 76 (389)
T ss_pred HHHHHcCCCCCCCCcc-cEEEEECCCCCCCC---------------hhHHHHHHHHHHHHHHcC-CcEECCCCCeECccc
Confidence 4577777753567887 59999999999953 245566677777777774 899999999999999
Q ss_pred cccccceeecCCCcccC-CeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhhH
Q 003763 83 LEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDL 161 (797)
Q Consensus 83 ~E~~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakDv 161 (797)
+|++ ..| ++++|+||||||+||||++|||+|++|++++|+||++|+++|++++|+|+|+|++||++||+
T Consensus 77 ~E~~----------~~pG~~i~g~DSHT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP~~~~v~l~G~l~~~V~~kDl 146 (389)
T cd01351 77 VENL----------ALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKPEVVGVNLTGKLSPGVTGKDV 146 (389)
T ss_pred cccc----------CCCCCEEEEcCcCccccCcchheEEeeeHHHHHHHHhcCceeccCCcEEEEEEecccCCCceeeHH
Confidence 9944 355 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHh
Q 003763 162 VLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRAN 241 (797)
Q Consensus 162 iL~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~~~ 241 (797)
+|+|++.|+.+|++|+++||+|+|+++||+++|+|||||++|+||++|+||+|++|++||+.++|++... .++.|.+
T Consensus 147 ~l~ilg~lg~~g~~~~~~Ef~G~~~~~ls~d~r~tl~nm~~E~ga~~gi~p~D~~t~~yl~~~~~~~~~~-~~~~~~~-- 223 (389)
T cd01351 147 VLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWLEATGRPLLKN-LWLAFPE-- 223 (389)
T ss_pred HHHHHHHHhhcccCceEEEEECCccCCCCHHHHHHHHHHhHhhhheEeEeCCcHHHHHHHHhcCCchhhH-HHHHHHh--
Confidence 9999999999999999999999999999999999999999999999999999999999999999886533 2333322
Q ss_pred hhhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccCCC
Q 003763 242 KMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGT 321 (797)
Q Consensus 242 ~l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 321 (797)
. +.+|++|.|+++|+||||+|+|+||+|++|||++|++++.+
T Consensus 224 -~----l~~d~~a~y~~~i~iDls~lep~va~p~~p~~~~~v~~~~~--------------------------------- 265 (389)
T cd01351 224 -E----LLADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVEG--------------------------------- 265 (389)
T ss_pred -c----cCCCCCCCeeEEEEEEhhhceeEEecCCChhhccChhhccC---------------------------------
Confidence 2 25899999999999999999999999999999999999763
Q ss_pred cccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEec
Q 003763 322 PAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVG 401 (797)
Q Consensus 322 ~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~ 401 (797)
.+|+++|||||||+|++||+.||.+| ||+||+++|+++|+|||++|+++++++|++++|+++||.|..
T Consensus 266 ------~~Id~v~IGSCtn~~~~dl~~aA~il------kgk~v~~~v~~~v~P~S~~v~~~a~~~Gl~~~l~~aG~~i~~ 333 (389)
T cd01351 266 ------TKIDQVLIGSCTNNRYSDMLAAAKLL------KGAKVAPGVRLIVTPGSRMVYATLSREGYYEILVDSGARILP 333 (389)
T ss_pred ------CceeEEEEecCCCCCHHHHHHHHHHH------cCCcCCCCceEEEECCCHHHHHHHHHcChHHHHHHCCCEEeC
Confidence 14789999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhcccc
Q 003763 402 YGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 467 (797)
Q Consensus 402 ~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i 467 (797)
+||++|+|+++++..+ +++ +|||+||||+||||+..+.+|||||+|||||||+|+|
T Consensus 334 ~gC~~C~G~~~~~~~~-------g~~---~vst~nRNF~GR~g~~~~~~yLaSP~~vaAsAl~G~i 389 (389)
T cd01351 334 PGCGPCMGNGARLVAD-------GEV---GVSSGNRNFPGRLGTYERHVYLASPELAAATAIAGKI 389 (389)
T ss_pred CCCcccCCCCCCcCCC-------CcE---EEEeecCCCccccCCCCCceEECCHHHHHHHHhcCcC
Confidence 9999999999887544 554 6899999999999998888999999999999999986
No 31
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=4.8e-93 Score=827.16 Aligned_cols=370 Identities=23% Similarity=0.354 Sum_probs=330.5
Q ss_pred hHHHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceeccc
Q 003763 2 RDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQV 81 (797)
Q Consensus 2 r~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv 81 (797)
|+.|+++|. .+++|.. +.+++||.+|..+. .++..|+.+++|.+++ ++.+++||+|||||+
T Consensus 411 ~~~~~~lg~--~~~~~d~-v~~~~dH~~p~~~~--~~a~~~~~lr~Fa~~~--------------Gi~~~~pG~GI~H~v 471 (835)
T PRK09238 411 RDELKDLAC--LGFSADL-VMQSFCHTAAYPKP--VDVKTHHTLPDFIMNR--------------GGVSLRPGDGVIHSW 471 (835)
T ss_pred HHHHHHcCC--cccCCCc-EEEEccCCCCCCCH--HHHHHHHHHHHHHHHc--------------CCcEeCCCCCeeeec
Confidence 688999988 6799996 99999999999754 4666899999999964 345688999999999
Q ss_pred ccccccceeecCCCcccCCe-EEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhh
Q 003763 82 NLEYLGRVVFNTNGMLYPDS-VVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATD 160 (797)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P~~-vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakD 160 (797)
+. ++++|++ ++||||||||+|| ||||+|++|++.+|++|++||+|||+|+|+|+|+|++|||+||
T Consensus 472 l~-----------~~~~Pg~vivG~DSHT~t~ga---~a~G~Gs~~vA~a~atG~~~l~vPesv~V~l~G~L~~gVtaKD 537 (835)
T PRK09238 472 LN-----------RMLLPDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRD 537 (835)
T ss_pred cc-----------ccccCCeEEEecccccCCCCc---eEeccchHHHHHHHhhCceEEeCCCEEEEEEecccCCCcCHhH
Confidence 63 5889975 6999999999997 7899999999999999999999999999999999999999999
Q ss_pred HHHHH----HHH--------HHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeec-CChHHHHHHhhc---
Q 003763 161 LVLTV----TQM--------LRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFP-VDHVTLQYLKLT--- 224 (797)
Q Consensus 161 viL~i----~~~--------l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp-~D~~t~~yl~~~--- 224 (797)
|||+| +++ ++.+|++||+|||. |+++||+++|||||||++|+||++|+|| +|++|++||+.+
T Consensus 538 viL~I~~~~i~~g~ltv~~~~g~~~~~gr~lEf~--Gv~~Lsve~R~Tl~NMa~E~GA~~~i~~~~de~t~eYL~~~~~~ 615 (835)
T PRK09238 538 LVHAIPYYAIKQGLLTVEKKGKKNIFSGRILEIE--GLPDLKVEQAFELTDASAERSAAGCTIKLSKEPIIEYLRSNIVL 615 (835)
T ss_pred HHHHHHHHHHhcccccccccCCccceeeeEEEEc--CcccCCHHHHHhHhhccHhhCceeceecCChHHHHHHHHhcccc
Confidence 99999 442 34445789999995 6999999999999999999999999999 788899999986
Q ss_pred -------CCCc-----hhHHHHHHHHHHhhhhcccCCCCCCCcccEEEEEEcCCc-ccCccCCCCCCCccccCcccchhh
Q 003763 225 -------GRSD-----DTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWH 291 (797)
Q Consensus 225 -------gr~~-----~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~l-eP~VA~P~~P~~~~~v~e~~~~~~ 291 (797)
||.+ .+.+.+++|++.+.+| .+|++|+|+++|+||||+| ||+||+|++|||++||+|+.+
T Consensus 616 ~~~mi~~g~~~~~~~~~r~~~~~~w~~~~~ll----~aD~dA~Y~~vieIDLs~i~eP~VA~P~~Pdnv~~lsev~g--- 688 (835)
T PRK09238 616 LKWMIAEGYGDARTLERRIAAMEEWLANPELL----EADADAEYAAVIEIDLAEIKEPILACPNDPDDVRLLSEVAG--- 688 (835)
T ss_pred cccccccCcccccchhHHHHHHHHHHhhcccc----cCCCCCceEEEEEEEhhhcCCCeecCCCChhhheEHHHhcC---
Confidence 6542 3456788899888887 5899999999999999999 999999999999999999874
Q ss_pred hhhcccccCCCccCccccccccceeccCCCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEE
Q 003763 292 ACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTS 371 (797)
Q Consensus 292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~ 371 (797)
. +|+++|||||| |+++|++.||.+| ||+++++.||++
T Consensus 689 -----------~-------------------------~Id~vfIGSCT-gr~~DlraAA~IL------kg~~v~~~vr~~ 725 (835)
T PRK09238 689 -----------T-------------------------KIDEVFIGSCM-TNIGHFRAAGKLL------EGKKGQLPTRLW 725 (835)
T ss_pred -----------C-------------------------ccCeEEEEcCC-CCHHHHHHHHHHH------cCCccCCCCCEE
Confidence 1 35689999999 9999999999999 999999999999
Q ss_pred EecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCce
Q 003763 372 LAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANY 451 (797)
Q Consensus 372 v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~y 451 (797)
|+|||++|+++|+++|++++|.++||.|..||||+|+|+++.+ .+|++ +|||+||||+||||+ .+.+|
T Consensus 726 V~P~S~~v~~~l~~eG~~~~l~~AGa~v~~pGCg~C~G~~~~~--------~~ge~---~vSTsNRNF~GRmG~-~a~vY 793 (835)
T PRK09238 726 VAPPTKMDADQLTEEGYYSIFGKAGARIEMPGCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGK-GANVY 793 (835)
T ss_pred EECCCHHHHHHHHHcCcHHHHHHcCCEECCCcchhhhCccCcC--------CCCCE---EEeecCCCCCCCCCC-CCCeE
Confidence 9999999999999999999999999999999999999985543 34675 689999999999997 56799
Q ss_pred ecChHHHHHHhhccccc
Q 003763 452 LASPPLVVAYALAGSVN 468 (797)
Q Consensus 452 LaSP~~vaAsAiaG~i~ 468 (797)
|+||++||||||+|+|+
T Consensus 794 LaSP~~aAAsAi~G~I~ 810 (835)
T PRK09238 794 LGSAELAAVCALLGRIP 810 (835)
T ss_pred eCCHHHHHHHHhCCccC
Confidence 99999999999999993
No 32
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=5.3e-92 Score=815.87 Aligned_cols=368 Identities=23% Similarity=0.361 Sum_probs=327.0
Q ss_pred hHHHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceeccc
Q 003763 2 RDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQV 81 (797)
Q Consensus 2 r~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv 81 (797)
|+.|+++|. .+|+|.. +.+++||.+|.... .++..|+.+++|.+++ ++.+++||+|||||+
T Consensus 412 ~~~~~~l~~--~vfdpd~-v~~~~DH~~p~~~~--~~a~~~~~lr~Fa~~~--------------Gi~~~~pG~GI~Hqv 472 (844)
T TIGR00117 412 RDELKELAC--LGFSADL-VLQSFCHTAAYPKP--VDVNTHHTLPDFIMNR--------------GGVALRPGDGVIHSW 472 (844)
T ss_pred HHHHHHhCC--ceECCCc-EEEEeCCCCCCCCH--HHHHHHHHHHHHHHHc--------------CCeEECCCCceeccc
Confidence 688999876 6899986 99999999988644 5667899999999873 355788999999999
Q ss_pred ccccccceeecCCCcccCC-eEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhh
Q 003763 82 NLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATD 160 (797)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakD 160 (797)
+.| +++|+ +++||||||||+ +| ||+|+|++|++.+|++|++||+|||+|+|+|+|+|++|||+||
T Consensus 473 l~e-----------~~~PG~vivG~DSHT~t~--~G-~a~G~Gs~dvA~a~atG~~~l~vPesV~V~l~G~L~~gVtaKD 538 (844)
T TIGR00117 473 LNR-----------MLLPDTVGTGGDSHTRFP--LG-ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRD 538 (844)
T ss_pred chh-----------hccCCeeEEecccccccc--ce-EEecccHHHHHHHHHhCeeeEeCCCEEEEEEeccCCCCcChhh
Confidence 876 46786 469999999997 67 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH------h------cCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChH-HHHHHhhc---
Q 003763 161 LVLTVTQMLR------K------HGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHV-TLQYLKLT--- 224 (797)
Q Consensus 161 viL~i~~~l~------~------~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~-t~~yl~~~--- 224 (797)
|||+|+..+. . +|++||+|||. |+++||+++|||||||++|+||++|+||+|++ |++||+.+
T Consensus 539 liL~I~~~~i~~G~ltv~k~g~~ng~~gk~lEf~--Gi~~Lsve~R~Ti~NMaaE~GA~~gii~~D~e~t~eYLk~~~~~ 616 (844)
T TIGR00117 539 LVNAIPLYAIKQGLLTVEKKGKKNVFNGRILEIE--GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVL 616 (844)
T ss_pred HHHHHHHHHHhcCeeecccccccccccceEEEEC--CcccCCHhHHHHHhhhhhhhCceEEEeccChHHHHHHHHhCccc
Confidence 9999954333 2 45789999995 59999999999999999999999999999965 89999995
Q ss_pred -------CCCc-----hhHHHHHHHHHHhhhhcccCCCCCCCcccEEEEEEcCCc-ccCccCCCCCCCccccCcccchhh
Q 003763 225 -------GRSD-----DTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWH 291 (797)
Q Consensus 225 -------gr~~-----~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~l-eP~VA~P~~P~~~~~v~e~~~~~~ 291 (797)
||.+ .+.+.+++|++...+| .+|++|.|+++|+||||+| ||+||+|++|||++||+|+.+
T Consensus 617 ~~~mi~~G~~~~~~~~~~~~~~e~w~~~~~ll----~aD~dA~Y~~vieIDLs~i~EP~VA~P~~PDnv~pvsev~g--- 689 (844)
T TIGR00117 617 LKWMIAEGYGDRRTLERRIQGMEKWLANPELL----EADADAEYAAVIEIDLAEIKEPILAAPNDPDDVRPLSEVQG--- 689 (844)
T ss_pred cccccccCCcchhhhhHHHHHHHHHHhhcccc----cCCCCCceEEEEEEEhHhCCCCeeCCCCChhhccChHhhcC---
Confidence 6643 3567788898877777 5899999999999999999 999999999999999999863
Q ss_pred hhhcccccCCCccCccccccccceeccCCCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEE
Q 003763 292 ACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTS 371 (797)
Q Consensus 292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~ 371 (797)
. .|+++|||||| ++++|++.||.+| ||+++++ ||++
T Consensus 690 -----------~-------------------------~IdqVfIGSCT-~n~~DlraAA~IL------kg~~v~~-vrl~ 725 (844)
T TIGR00117 690 -----------D-------------------------KIDEVFIGSCM-TNIGHFRAAGKIL------DAAGQLP-TRLW 725 (844)
T ss_pred -----------c-------------------------ccceEEEEcCC-CCHHHHHHHHHHH------cCCCcCC-CCEE
Confidence 1 25689999999 7999999999999 8999988 9999
Q ss_pred EecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCce
Q 003763 372 LAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANY 451 (797)
Q Consensus 372 v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~y 451 (797)
|+|||++|+++|+++|++++|.++||.|..||||+|+|+++.+. +|++ +|||+||||+||||+ .+.+|
T Consensus 726 V~P~S~~V~~~l~~eG~~~~f~~AGa~i~~pGCg~C~Gn~~~v~--------~Ge~---vvSTsNRNF~GRmG~-~a~vY 793 (844)
T TIGR00117 726 VAPPTRMDEQQLTEEGYYSIFGAAGARTEIPGCSLCMGNQARVA--------DGAT---VFSTSTRNFPNRMGT-GANVY 793 (844)
T ss_pred EECCCHHHHHHHHHcCcHHHHHHcCCEECCCccccccCCCCcCC--------CCCE---EEeccCCCCCCCCCC-CccEE
Confidence 99999999999999999999999999999999999999966543 3564 689999999999998 45799
Q ss_pred ecChHHHHHHhhcccc
Q 003763 452 LASPPLVVAYALAGSV 467 (797)
Q Consensus 452 LaSP~~vaAsAiaG~i 467 (797)
||||++||||||+|+|
T Consensus 794 LaSP~~aAAsAi~G~I 809 (844)
T TIGR00117 794 LGSAELAAVCALLGKI 809 (844)
T ss_pred eCCHHHHHHHHhCccc
Confidence 9999999999999999
No 33
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=6.3e-90 Score=796.00 Aligned_cols=370 Identities=23% Similarity=0.358 Sum_probs=326.2
Q ss_pred hHHHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceeccc
Q 003763 2 RDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQV 81 (797)
Q Consensus 2 r~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv 81 (797)
|+.|+++|.. .++|.. |.+++||.+|.... .++..|+.+++|.+++ ++.+++||+|||||+
T Consensus 485 ~~efkel~~~--~~dpdk-v~~~fDH~ap~p~~--~~~~~~~~lr~Fa~~~--------------Gi~~~~~G~GI~Hqv 545 (938)
T PLN00094 485 RDELKDLACL--GFSADL-VMQSFCHTAAYPKP--VDVVTHHTLPDFIRNR--------------GGVSLRPGDGVIHSW 545 (938)
T ss_pred HHHHHHhccc--ccCccc-EEEEccCCCCCCCH--HHHHHHHHHHHHHHHc--------------CCEEECCCCceeccc
Confidence 6889998774 679986 99999999998755 5666788899988853 355789999999998
Q ss_pred ccccccceeecCCCcccCC-eEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhh
Q 003763 82 NLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATD 160 (797)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakD 160 (797)
+.| +++|+ +++|+|||||+.+|+ +||.|++|++.+|++|++||+|||+|+|+|+|+|++|||+||
T Consensus 546 L~e-----------~~lPG~vivGgDSHT~fa~GI---sf~aGsgdvA~a~ATG~~wlkvPEsV~V~l~G~L~~gVtaKD 611 (938)
T PLN00094 546 LNR-----------MLLPDTVGTGGDSHTRFPIGI---SFPAGSGLVAFGAATGVIPLDMPESVLVRFTGTMQPGITLRD 611 (938)
T ss_pred ccc-----------cccCCeEEEeecCCCCCcccc---cCCCcHHHHHHHHHhCeehhcCCCEEEEEEecccCCCcCHhH
Confidence 754 67785 689999999988775 558899999999999999999999999999999999999999
Q ss_pred HHHHHH------HHHHh------cCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCCh-HHHHHHhh----
Q 003763 161 LVLTVT------QMLRK------HGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDH-VTLQYLKL---- 223 (797)
Q Consensus 161 viL~i~------~~l~~------~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~-~t~~yl~~---- 223 (797)
|||+|+ +.|+. ++++||+||| +|+++||+++|||||||++|+||++|+||+|+ .|++||+.
T Consensus 612 lIL~Ii~~~i~~G~Ltv~k~gk~~~f~GkilEf--~Gl~~Lsve~R~TL~NMaaE~GAk~gii~~Dde~t~eYL~~n~~~ 689 (938)
T PLN00094 612 LVHAIPYTAIQDGLLTVEKKGKKNVFSGRILEI--EGLPHLKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNVVM 689 (938)
T ss_pred HHHHHHHHhhhccccchhhcCccceEeeEEEEe--CCcccCCHhHHHHHHhHHHHhCccEEEECCChhHHHHHHhhcccc
Confidence 999997 44433 3468999999 77999999999999999999999999999995 68999986
Q ss_pred ------cCCC-----chhHHHHHHHHHHhhhhcccCCCCCCCcccEEEEEEcCCc-ccCccCCCCCCCccccCcccchhh
Q 003763 224 ------TGRS-----DDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWH 291 (797)
Q Consensus 224 ------~gr~-----~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~l-eP~VA~P~~P~~~~~v~e~~~~~~ 291 (797)
+|+. +.+++.+++|++...+| .+|+||+|+++|+||||+| ||+||+|++|||++||+|+.+
T Consensus 690 ~~~mi~~g~~~~rt~~~ri~~~e~w~~~~~ll----~aD~dA~Y~~vieIDLs~I~EP~VA~P~~PDnv~~lsev~g--- 762 (938)
T PLN00094 690 LKWMIAEGYGDRRTLERRIARMQQWLADPELL----EADPDAEYAAVIEIDMDEIKEPILCAPNDPDDARLLSEVTG--- 762 (938)
T ss_pred hhhhhccCCCchhhHHHHHHHHHHHHhhcccc----cCCCCCceEEEEEEEhHHCCCCeEeCCCChhhceECchhcC---
Confidence 4543 23456788898887777 5899999999999999999 999999999999999999863
Q ss_pred hhhcccccCCCccCccccccccceeccCCCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEE
Q 003763 292 ACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTS 371 (797)
Q Consensus 292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~ 371 (797)
. +|+++|||||| ++++|++.||.+| +|+++++.||++
T Consensus 763 -----------~-------------------------kIDqVFIGSCT-grieDlraAA~IL------kGrkv~~~Vrl~ 799 (938)
T PLN00094 763 -----------D-------------------------KIDEVFIGSCM-TNIGHFRAAGKLL------NDNLSQLPTRLW 799 (938)
T ss_pred -----------C-------------------------ccCeEEEEeCC-CCHHHHHHHHHHH------cCCCCCCCCcEE
Confidence 1 35689999999 7999999999999 899999999999
Q ss_pred EecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCce
Q 003763 372 LAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANY 451 (797)
Q Consensus 372 v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~y 451 (797)
|+|||++|+++|+++|++++|.++||.|..||||+|+|+++.+. +|++ +|||+||||+||||+ .+.+|
T Consensus 800 V~P~Sr~V~~ql~~eG~~~if~~AGA~i~~PGCg~CmG~~g~l~--------~Gev---~vSTSNRNF~GRmG~-~a~VY 867 (938)
T PLN00094 800 VAPPTKMDEAQLKAEGYYSTFGTVGARTEMPGCSLCMGNQARVA--------EKST---VVSTSTRNFPNRLGK-GANVY 867 (938)
T ss_pred EeCCCHHHHHHHHHcCcHHHHHhCCCEEcCCccccccCCCCcCC--------CCCe---EEeecCCCCCCCCCC-CccEE
Confidence 99999999999999999999999999999999999999966543 4565 689999999999998 56899
Q ss_pred ecChHHHHHHhhccccc
Q 003763 452 LASPPLVVAYALAGSVN 468 (797)
Q Consensus 452 LaSP~~vaAsAiaG~i~ 468 (797)
|+||++||||||+|+|+
T Consensus 868 LaSP~~AAASAi~G~It 884 (938)
T PLN00094 868 LASAELAAVAAILGRLP 884 (938)
T ss_pred ecCHHHHHHHHhCCccC
Confidence 99999999999999993
No 34
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=100.00 E-value=9.6e-64 Score=484.93 Aligned_cols=170 Identities=76% Similarity=1.160 Sum_probs=166.6
Q ss_pred ecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCc
Q 003763 571 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 650 (797)
Q Consensus 571 ~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~~~~~~~~~~~ 650 (797)
++||+||||||||||+|+++|||++||.++|++++|||+||+||||||||+||||+|+|++|+|++|.+|++|.|+|+|+
T Consensus 1 ~lgD~iTTDHISPaG~I~~~s~ag~yL~~~gv~~~dfnsyg~rRgnhevm~RgtFan~r~~N~~~~~~~g~~t~~~p~g~ 80 (171)
T cd01580 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLVPGTEGGTTHHPPTGE 80 (171)
T ss_pred CCCCCccccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCceEeecccccchhhhhcccCCCCCCcEEECCCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceecCCcchhhccc
Q 003763 651 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG 730 (797)
Q Consensus 651 ~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~ 730 (797)
.++|||+|++|+++++++|||||+|||||||||||||+++++||++|||+||+|||++||+|||||||+|+++++++.|+
T Consensus 81 ~~~i~~aA~~Yk~~g~plIIvaG~nfG~GSSRE~Aa~~~~~lGi~aVIA~SFarI~~~Nli~~Gllpl~~~~~~~~~~l~ 160 (171)
T cd01580 81 VMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESFERIHRSNLVGMGILPLQFPPGENADSLG 160 (171)
T ss_pred EeeHHHHHHHHHHcCCcEEEEccCcccCCCcHHHHHHHHHHhCCCEEEEccHHHHHHhhHhhcCcceEEeCCccCHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEe
Q 003763 731 LTGHERYTID 740 (797)
Q Consensus 731 ~~~~~~~~id 740 (797)
+++.|.++|.
T Consensus 161 l~g~e~~~i~ 170 (171)
T cd01580 161 LTGEETYDII 170 (171)
T ss_pred CCCceeEEee
Confidence 9999988874
No 35
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=6.6e-46 Score=410.18 Aligned_cols=330 Identities=26% Similarity=0.426 Sum_probs=278.1
Q ss_pred eCCCCceecccccccccceeecCCCcccCCeE-EecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEe
Q 003763 71 VPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSV-VGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLS 149 (797)
Q Consensus 71 ~~pg~GI~Hqv~~E~~a~~v~~~~G~~~P~~v-vGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~ 149 (797)
..||.||+|.+. +-+++||++ .|+||||.+.=| ++|+.|+-=++.+.+++.+.+.+||+|.|+++
T Consensus 463 lrpgdGVIHswL-----------NrmllpDtvgtGGDSHTRfpiG---isFpAgSGlVAfAaatGvmpldmPeSVlVrFk 528 (852)
T COG1049 463 LRPGDGVIHSWL-----------NRMLLPDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFK 528 (852)
T ss_pred cCCCCccHHHHH-----------HhccCCcceecCCccccccccc---ceecCCCchhhhhHhcCcccCCCCceEEEEec
Confidence 357899999975 458899975 899999999866 46777888889999999999999999999999
Q ss_pred ccCCCCCchhhHHHHHHHH------HH--h----cCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChH-
Q 003763 150 GKLRDGVTATDLVLTVTQM------LR--K----HGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHV- 216 (797)
Q Consensus 150 G~l~~gVtakDviL~i~~~------l~--~----~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~- 216 (797)
|+++||||-+||+.+|--. |. + +-..|+++|. +|+.+|.+++-++++..++|..|..+.+-.+++
T Consensus 529 G~mQPgitlRDlV~Aip~yaikQglltv~k~~k~NiFsGRIlEi--eglp~LkveQAFeltDasAErsaa~ctikl~~e~ 606 (852)
T COG1049 529 GEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRILEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEP 606 (852)
T ss_pred cccCCCcCHHHHHhhhHHHHHHhhheeccccCccceecceeEEe--ccCcccchhhheeccchhhhhhhccceEecCchh
Confidence 9999999999999887532 22 1 1245999999 679999999999999999999999888876554
Q ss_pred HHHHHhhc----------CCCc-----hhHHHHHHHHHHhhhhcccCCCCCCCcccEEEEEEcCCc-ccCccCCCCCCCc
Q 003763 217 TLQYLKLT----------GRSD-----DTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDR 280 (797)
Q Consensus 217 t~~yl~~~----------gr~~-----~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~l-eP~VA~P~~P~~~ 280 (797)
..+||+.. |..+ ..++.+++|+.+..++ .+|.+|+|..+|+|||+.| ||++|+|++||++
T Consensus 607 iiEyL~sni~l~k~MIa~Gy~d~rTL~rri~~me~wla~p~ll----e~D~dAeYaavIeidL~~IkEPila~PNdpDd~ 682 (852)
T COG1049 607 IIEYLKSNIVLLKWMIAEGYGDARTLERRIDKMEAWLANPELL----EADADAEYAAVIEIDLADIKEPILAAPNDPDDV 682 (852)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhcCcccc----CCCCCCceeEEEEeeHHHcCCCeecCCCCchHh
Confidence 56888754 4332 2467788999888776 6899999999999999999 8999999999999
Q ss_pred cccCcccchhhhhhcccccCCCccCccccccccceeccCCCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhC
Q 003763 281 VPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACEL 360 (797)
Q Consensus 281 ~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~ 360 (797)
..+|++.++ .|+-+|||||... .-+++++|.+| +
T Consensus 683 r~lse~~~~---------------------------------------~idevFiGSCMtn-iGh~ra~~klL------~ 716 (852)
T COG1049 683 RLLSEVAGD---------------------------------------KIDEVFIGSCMTN-IGHFRAAGKLL------E 716 (852)
T ss_pred hHhHHhcCC---------------------------------------ccceeeeehhhcc-chhHHHHHHHH------H
Confidence 999987641 2456899999864 56899999988 4
Q ss_pred CCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCC
Q 003763 361 GLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFE 440 (797)
Q Consensus 361 G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~ 440 (797)
+.+-.-..|++|+|.++....+|.++|++.+|-++|+++..|||+.|+||...+ ++|.. .+||++|||+
T Consensus 717 ~~~~~~~~rLwvapPTkmd~~qL~~EG~y~ifg~agar~E~PGCsLCMGNQarv--------~dgat---V~sTSTRnF~ 785 (852)
T COG1049 717 NAKGELPTRLWVAPPTKMDAAQLTEEGYYSIFGKAGARIEMPGCSLCMGNQARV--------ADGAT---VFSTSTRNFP 785 (852)
T ss_pred hcccCCCcceEecCCccccHHHHhhcchHHHHhhccceecCCCcccccccHhhh--------ccCCE---EEeeccccCC
Confidence 443222378999999999999999999999999999999999999999996543 35665 4799999999
Q ss_pred CCCCCccCCceecChHHHHHHhhcccccccCCCCccccCCCCceeccccCCCChHHHHHHhh
Q 003763 441 GRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQ 502 (797)
Q Consensus 441 GR~g~~~~~~yLaSP~~vaAsAiaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~ 502 (797)
+|+|... .+||+|.+++|.+||.|+| |+.+|..+++.
T Consensus 786 nRlg~~a-~vyL~Saelaav~aiLGki------------------------Pt~eEY~~~v~ 822 (852)
T COG1049 786 NRLGKGA-NVYLASAELAAVCAILGKI------------------------PTVEEYMAYVA 822 (852)
T ss_pred ccccccc-ceeeeccHHHHHHHHHcCC------------------------CCHHHHHHHHH
Confidence 9999976 5899999999999999998 78888877765
No 36
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-46 Score=398.64 Aligned_cols=440 Identities=24% Similarity=0.268 Sum_probs=283.1
Q ss_pred HHHHHhhhhcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccce
Q 003763 236 SYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAE 315 (797)
Q Consensus 236 ~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (797)
+|-++..+|... .+|+.+.|+.+++|..-++.|.+.|..+||++.|+..-.++.....+ +| -.......
T Consensus 13 ~we~avaywktl-~~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~vtd--------~i--~a~~~ers 81 (502)
T KOG0454|consen 13 KWESAVAYWKTL-FPDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTVTD--------KI--LARASERS 81 (502)
T ss_pred chhhhhhhhhcc-cCcccccceeeeeccccceeeeeeecCCcccCCCcCCcCCCCcccch--------HH--HHhhhhhc
Confidence 355666777654 68999999999999999999999999999999999876554322111 00 01112345
Q ss_pred eccCCCccccc--CccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCcee-EEEecCCHHHHHHHHHcCcHHHH
Q 003763 316 FNFHGTPAQLR--HGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIK-TSLAPGSGVVTKYLQNSGLQKYL 392 (797)
Q Consensus 316 ~~~~g~~~~l~--~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~-~~v~PgS~~V~~~l~~~Gl~~~l 392 (797)
+.|+|.+.... --.++.+|||||||++.+||+.+|+++ +|.|++-.++ .+++|||+.|...++.+||.++|
T Consensus 82 L~ymGl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv------~g~Kia~n~k~am~vpgsglvkk~aeaegld~if 155 (502)
T KOG0454|consen 82 LVYMGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVV------DGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIF 155 (502)
T ss_pred eeeccCCCCcccceeeecceeccccccccHHHHhhhhhcc------ccceeEecccceEEecCchhhHhHHHHHhhHHHH
Confidence 77888766444 224567999999999999999999999 9999987777 68999999999999999999999
Q ss_pred HhcCcEEeccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhcccccccCC
Q 003763 393 NHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFE 472 (797)
Q Consensus 393 ~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i~~d~~ 472 (797)
.++||.|+..||+.|.|+..+..-..+.| -+|+||||+||+|...++ +|+||.+.+|.++.|+.. ++
T Consensus 156 ~eagF~wreagcs~clgmnpd~l~~yerc----------astsnRnfEgrqGa~srT-hlma~s~qfAagi~~~~~-~~- 222 (502)
T KOG0454|consen 156 NEAGFYWREAGCSFCLGMNPDGLCHYERC----------ASTSNRNFEGRQGADSRT-HLMAASMQFAAGIGGHDL-GF- 222 (502)
T ss_pred HhhceehhhccccccccCCchhccHHHHh----------hhccCCCccccccccccc-hhhhhhHHhhcccccccc-cc-
Confidence 99999999999999999986655555654 489999999999999876 999999999999999874 11
Q ss_pred CCccccCCCCceeccccCCCChHHHHHHhhhccCchhhhhhcccccC-CCcccccccCCCCCccccCC-CCc--cccCCC
Q 003763 473 TEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITK-GNPMWNQLSVPSGTLYAWDP-KST--YIHEPP 548 (797)
Q Consensus 473 ~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~p~~~~~~y~~~~~-~~~~~~~l~~~~~~~~~w~~-~st--~i~~pp 548 (797)
+++..++ . .-..|+..-.-+-....+.|+ +..+.. +++.-.. .+.+.=++ .|+ -+..++
T Consensus 223 --~~~~~k~---~--~~~~Ps~~l~~~g~s~sv~~~-----~~li~~ia~ds~t~-----i~~~at~e~~s~~sSl~m~~ 285 (502)
T KOG0454|consen 223 --REFTGKD---S--LKVSPSPFLTLKGESPSVLPA-----KDLIVSIATDSSTD-----IPRVATMEFSSTTSSLGMET 285 (502)
T ss_pred --ccccccc---c--ccCCCCceEEeCCCCcccccc-----ccchhhhhcccccc-----ccceecccCCCccccccCcc
Confidence 1110000 0 000122110000000000000 000000 0000000 01111111 111 122222
Q ss_pred CCccCCCCCCCCCCcccceEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccch
Q 003763 549 YFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANI 628 (797)
Q Consensus 549 ~f~~~~~~~~~~~~i~~~~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~ 628 (797)
|. .+...+.|||+||+||| ++||+. +.++.. .+..|..+
T Consensus 286 F~----------------tLc~vv~dNiDTD~IIP----------~qfltl--i~~~~~-------------~~~~f~~~ 324 (502)
T KOG0454|consen 286 FH----------------TLCGVVADNIDTDQIIP----------AQFLTL--IPSTGL-------------ILSCFYEV 324 (502)
T ss_pred ee----------------eeehhhhhhCCcCcccC----------hhhhcc--cccchh-------------hhhhhhhh
Confidence 21 13345669999999999 589986 333322 46677777
Q ss_pred hhhhhhcCCCCCC-ceeccCCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhh
Q 003763 629 RLVNKLLNGEVGP-KTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHR 707 (797)
Q Consensus 629 r~~n~~~~~~~~~-~~~~~~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~ 707 (797)
++. |.... .++ ++++. +.|++. .|+|+|.|||||||||||+|++.+.|+++|||+||+|||+
T Consensus 325 ~~d-----g~~k~~~~d--------Fv~~v-E~~~~~---siii~~DNFGCGSSREHAPv~L~~~GakaivA~Sya~IFf 387 (502)
T KOG0454|consen 325 ALD-----GLPKSFVTD--------FVLPV-EPLRKY---SIIIGGDNFGCGSSREHAPVCLGAAGAKAIVAPSYARIFF 387 (502)
T ss_pred eec-----CCchhhccc--------eeccc-ccccee---EEEeccCCcccccccccCcchhhhcccceecchhHHHHHH
Confidence 653 21111 222 33333 334332 7999999999999999999999999999999999999999
Q ss_pred hhcccCCccceecCCcchhhcccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCeEE-EEEecCCCHHHHHHHHhcCHHH
Q 003763 708 SNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSF-TCVIRFDTEVELAYFDHGGILQ 786 (797)
Q Consensus 708 ~Nlin~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~-~~~~~~~~~~e~~i~~aGGll~ 786 (797)
+|++.+|.+|..-+.....+. ...++..+|.+... ..++ .++..+|+.+ .+++.-+- --..-+||+..
T Consensus 388 rN~~atG~l~~~~s~~~v~de--~~~~dv~~v~l~~d----g~~~--~i~~t~~k~~f~lkP~~~a---clV~~ad~I~~ 456 (502)
T KOG0454|consen 388 RNSVATGELPPLPSEVRVCDE--CVTGDVYTVELSVD----GGNQ--LINHTTGKVYFKLKPFGDA---CLVIDADGIFA 456 (502)
T ss_pred HhHHhcCCccCCCceeeeccc--ceecceeeEEcccC----Ccce--eeeeecccceeecCccccc---CcccCchHHHH
Confidence 999999998876554433331 12244555555431 1122 3344455443 55442110 01134567776
Q ss_pred HHHHH
Q 003763 787 YVIRN 791 (797)
Q Consensus 787 ~v~~~ 791 (797)
|.+++
T Consensus 457 ~~~ke 461 (502)
T KOG0454|consen 457 YARKE 461 (502)
T ss_pred hhccc
Confidence 66654
No 37
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=6.7e-40 Score=314.59 Aligned_cols=141 Identities=35% Similarity=0.487 Sum_probs=123.5
Q ss_pred ecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCc
Q 003763 571 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 650 (797)
Q Consensus 571 ~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~~~~~~~~~~~ 650 (797)
|..+|||||||||||+ ||++ |||-+.+.+.+|. +..|.+. ++. ....+.++|+
T Consensus 1 k~~g~~tTDhI~pag~---------~l~~--------------R~~l~~is~~~~~--~a~n~~~-~~~-~~~~~~~~g~ 53 (149)
T cd01578 1 KAKGKCTTDHISAAGP---------WLKY--------------RGHLDNISNNLLI--GAINAEN-GKA-NSVKNQVTGE 53 (149)
T ss_pred CCCCccCcccccCCCc---------cccc--------------ccCHHHHHHHHhh--hhhhhhc-ccc-ccccccCCCc
Confidence 4678999999999984 7987 6788888888884 4566653 333 3567889999
Q ss_pred ccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceecCCcchhhccc
Q 003763 651 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG 730 (797)
Q Consensus 651 ~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~ 730 (797)
.++++++|++|++.++++|||+|+|||||||||||||+|++|||+||||+||+|||++||+|+|||||+|+++++++.+
T Consensus 54 ~~~~~~~A~~yk~~g~~~iIVaG~nyG~GSSREhAa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~f~~~~~~~~i- 132 (149)
T cd01578 54 YGPVPDTARDYKAHGIKWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYDKI- 132 (149)
T ss_pred ccchHHHHHHHHHcCCCeEEEccCccCCCCchHHHHHHHHHhCCCEEEEecHHHHHHHHHHhcCCceEEecChHHHHhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999888864
Q ss_pred CCCCeEEEEe
Q 003763 731 LTGHERYTID 740 (797)
Q Consensus 731 ~~~~~~~~id 740 (797)
.++++++|.
T Consensus 133 -~~gd~i~i~ 141 (149)
T cd01578 133 -HPDDKVDIL 141 (149)
T ss_pred -CCCCEEEEe
Confidence 567888774
No 38
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-38 Score=313.68 Aligned_cols=166 Identities=25% Similarity=0.442 Sum_probs=132.1
Q ss_pred EEeecC-CCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceecc
Q 003763 568 CLLNFG-DSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHI 646 (797)
Q Consensus 568 vl~~~g-d~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~~~~~~~ 646 (797)
...+++ ||||||+|+| ++||+. +++.+| .+++|.++|+.. |
T Consensus 10 ~~~pl~~dnIDTD~IIP----------~~fLk~--i~~~gl-------------~k~~f~~~r~~~--------P----- 51 (191)
T COG0066 10 RVWPLGRDNVDTDQIIP----------KRFLKT--ITRTGL-------------GKHLFEDWRYLD--------P----- 51 (191)
T ss_pred eEEecCCCCCccccCcc----------HHHhcc--cCHhhh-------------hhcccccccccC--------c-----
Confidence 345677 9999999999 799996 777777 578999998532 1
Q ss_pred CCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceecCCcchh
Q 003763 647 PTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDA 726 (797)
Q Consensus 647 ~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~ 726 (797)
+ ++.+. ++|+. ++|||||+|||||||||||+|||+.+||+||||+||||||++||+|+||||+...+++..
T Consensus 52 -d----F~~n~-~~yq~---g~IlVag~NFGcGSSREHApwALk~~Gi~~VIA~SFAdIFy~Na~nnG~Lpi~~~~~~~~ 122 (191)
T COG0066 52 -D----FVLNV-PPYQG---GDILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNGLLPIVLAEEDVT 122 (191)
T ss_pred -c----hhhcC-CccCC---ccEEEecCCCCCCccHHHHHHHHHHcCeeEEEeccHHHHHhhhhhhcCcCceecChHHHH
Confidence 1 23333 56755 589999999999999999999999999999999999999999999999999998876444
Q ss_pred hcccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCeEEEEEecCCCHHHHHHHHhc----CHHHHHHHHHh
Q 003763 727 ETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG----GILQYVIRNLI 793 (797)
Q Consensus 727 ~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~i~~aG----Gll~~v~~~~~ 793 (797)
+.+....+++++|||+.+ +|+..++.++.+.+ +++.++++.+| ||+.|.++++.
T Consensus 123 ~l~~~~~g~~i~VDL~~~----------~v~~~~~~~~~f~i---~~f~~~~L~~GlD~iGlt~~~~~~i~ 180 (191)
T COG0066 123 ELFEDVPGDEVTVDLETG----------EVTNPTGGEEPFEI---DDFRREILLNGLDDIGLTLQHKKEID 180 (191)
T ss_pred HHHHhCCCCEEEEEcCCC----------eEEeCCCCEEEccC---CHHHHHHHHcCCcccchHHHHHHHHh
Confidence 444333578999999874 34444343444443 78999999999 99999998874
No 39
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=100.00 E-value=8.7e-38 Score=308.61 Aligned_cols=157 Identities=29% Similarity=0.479 Sum_probs=127.1
Q ss_pred EeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCC
Q 003763 569 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 648 (797)
Q Consensus 569 l~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~~~~~~~~~ 648 (797)
+.++|||||||||+| ++||+. . +.+.|.+.+|.++|-
T Consensus 4 v~~~gdnIdTD~I~P----------~~~l~~--~-------------~~~~l~~~~f~~~~p------------------ 40 (163)
T PRK00439 4 VWKFGDNIDTDVIIP----------ARYLNT--S-------------DPQELAKHCMEDLDP------------------ 40 (163)
T ss_pred EEEeCCCCchhhCCh----------HHHhCC--C-------------CHHHHHHHHhccCCc------------------
Confidence 478999999999999 589975 2 456678889988761
Q ss_pred CcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceecCCcchhhc
Q 003763 649 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 728 (797)
Q Consensus 649 ~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~ 728 (797)
+++.+.+ .+.|||||+|||||||||||||+|+++||+||||+||+|||++||+|+||||+++++ +++.
T Consensus 41 -------~f~~~~~---~g~IiVaG~NfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~i~~~~--~~~~ 108 (163)
T PRK00439 41 -------EFAKKVK---PGDIIVAGKNFGCGSSREHAPIALKAAGVSAVIAKSFARIFYRNAINIGLPVLECDE--AVDK 108 (163)
T ss_pred -------chHhhcC---CceEEEeCCcccCCccHHHHHHHHHHHCCCeEEEehHHHHHHhhHHhcCCCeEEchh--HHHh
Confidence 1122333 257999999999999999999999999999999999999999999999999999964 3554
Q ss_pred ccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCeEEEEEecCCCHHHHHHHHhcCHHHHHHHHHh
Q 003763 729 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 793 (797)
Q Consensus 729 l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~i~~aGGll~~v~~~~~ 793 (797)
++.+++++||+..+ +|.. ..+|+++.+.. + ++.+++++++||+++|++++..
T Consensus 109 --l~~gd~i~idl~~~--------~v~~-~~~g~~~~f~~-l-~~~~~~il~aGGl~~~~~~~~~ 160 (163)
T PRK00439 109 --IEDGDEVEVDLETG--------VITN-LTTGEEYKFKP-I-PEFMLEILKAGGLIEYLKKKGR 160 (163)
T ss_pred --cCCCCEEEEECCCC--------EEEe-CCCCeEEEEee-C-CHHHHHHHHcCCHHHHHHHhcc
Confidence 46788999998763 3432 23478888863 3 7899999999999999998753
No 40
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=100.00 E-value=1.5e-37 Score=307.21 Aligned_cols=157 Identities=31% Similarity=0.478 Sum_probs=126.5
Q ss_pred EeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCC
Q 003763 569 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 648 (797)
Q Consensus 569 l~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~~~~~~~~~ 648 (797)
+.++|||||||+|+| ++||+.. .+.+.|.++.|.++|.
T Consensus 4 v~~~gdnIdTD~IiP----------a~~l~~~--------------~~~~~l~~~~f~~~~p------------------ 41 (166)
T PRK14023 4 VWKFGDNINTDDILP----------GKYAPFM--------------VGEDRFHNYAFAHLRP------------------ 41 (166)
T ss_pred eEEcCCCcchhhcch----------HHHhccC--------------CCHHHHHhhhccCCCh------------------
Confidence 478999999999999 6999751 2446678888877541
Q ss_pred CcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceecCCcchhhc
Q 003763 649 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 728 (797)
Q Consensus 649 ~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~ 728 (797)
+.+.+|+. +.|||||+|||||||||||+|+++++||++|||+||+|||++||+|+||||++. +++++.
T Consensus 42 -------~f~~~~~~---g~IIVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~~~~--~~~~~~ 109 (166)
T PRK14023 42 -------EFASTVRP---GDILVAGRNFGLGSSREYAPEALKMLGIGAIIAKSYARIFYRNLVNLGIPPFES--EEVVDA 109 (166)
T ss_pred -------hhHhhcCC---CCEEEccCcccCCccHHHHHHHHHHHCCCEEEEehHHHHHHhhhhhcCCCccCC--HHHHHH
Confidence 12345553 479999999999999999999999999999999999999999999999999864 345554
Q ss_pred ccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCeEEEEEecCCCHHHHHHHHhcCHHHHHHHHHhh
Q 003763 729 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 794 (797)
Q Consensus 729 l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~i~~aGGll~~v~~~~~~ 794 (797)
+ ..+++++||+..+ +++ . +|+++.+.+ .++.+++++++|||++|++++-..
T Consensus 110 l--~~gd~i~vDl~~~--------~v~--~-~g~~~~~~~--~~~~~~~il~aGGl~~~~~~~~~~ 160 (166)
T PRK14023 110 L--EDGDEVELDLETG--------VLT--R-GGETFQLRP--PPEFLLEALKEGSILEYYRKHGRF 160 (166)
T ss_pred h--CCCCEEEEECCCC--------EEE--E-CCEEEEEee--CCHHHHHHHHcCCHHHHHHHhCCC
Confidence 3 4678999998863 333 2 467788876 488999999999999999987543
No 41
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=1.2e-37 Score=304.48 Aligned_cols=152 Identities=30% Similarity=0.527 Sum_probs=122.0
Q ss_pred EeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCC
Q 003763 569 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 648 (797)
Q Consensus 569 l~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~~~~~~~~~ 648 (797)
+.++|||||||||+| ++||+. + +.+.|.+.+|.++|-
T Consensus 3 v~~~gdnIdTD~IiP----------~~~l~~--~-------------~~~~l~~~~f~~~~p------------------ 39 (154)
T TIGR02087 3 VWKFGDDIDTDEIIP----------GRYLRT--T-------------DPDELASHAMEGIDP------------------ 39 (154)
T ss_pred eEEcCCCcchhhCcH----------HHHhCc--C-------------CHHHHHhhccCcCCc------------------
Confidence 368999999999999 699964 2 456678888887651
Q ss_pred CcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceecCCcchhhc
Q 003763 649 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 728 (797)
Q Consensus 649 ~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~ 728 (797)
+++.+.+. +.|||+|+|||||||||||+|+|+++||+||||+||+|||+|||+|+||||+++++ +.
T Consensus 40 -------~f~~~~~~---g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Glp~i~~~~----~~ 105 (154)
T TIGR02087 40 -------EFAKKVRP---GDVIVAGKNFGCGSSREQAALALKAAGIAAVIAESFARIFYRNAINIGLPLIEAKT----EG 105 (154)
T ss_pred -------hhhhcCCC---CcEEEcCCcccCCccHHHHHHHHHHhCCCEEEeehHHHHHHhhhhhcCCCcEecCH----HH
Confidence 11122322 47999999999999999999999999999999999999999999999998887764 22
Q ss_pred ccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCeEEEEEecCCCHHHHHHHHhcCHHHHHHHH
Q 003763 729 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRN 791 (797)
Q Consensus 729 l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~i~~aGGll~~v~~~ 791 (797)
+..+++++||+..+ +|+ ..+|+++.+.. + ++.+++++++||+++|++++
T Consensus 106 --i~~gd~i~vdl~~~--------~v~--~~~g~~~~~~~-l-~~~~~~i~~aGGl~~~~~~~ 154 (154)
T TIGR02087 106 --IKDGDEVTVDLETG--------EIR--VNGNEEYKGEP-L-PDFLLEILREGGLLEYLKKR 154 (154)
T ss_pred --CCCCCEEEEECCCC--------EEE--ECCCeEEEEeC-C-CHHHHHHHHcCCHHHHHhcC
Confidence 34678899998763 343 34567788853 2 89999999999999999874
No 42
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=100.00 E-value=1.4e-37 Score=304.31 Aligned_cols=154 Identities=29% Similarity=0.519 Sum_probs=122.5
Q ss_pred EeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCC
Q 003763 569 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 648 (797)
Q Consensus 569 l~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~~~~~~~~~ 648 (797)
+.++|||||||||+| ++||+. .|.+.|.+.+|.++|-
T Consensus 3 v~~~gdnIdTD~I~P----------~~~l~~---------------~~~~~l~~~~f~~~~p------------------ 39 (156)
T TIGR02084 3 VHKYGDNVDTDVIIP----------ARYLNT---------------SDPKELAKHCMEDLDK------------------ 39 (156)
T ss_pred eEEcCCCccHhhccH----------HHHcCc---------------CCHHHHHhhhhccCCh------------------
Confidence 468999999999999 689863 2456778888987651
Q ss_pred CcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceecCCcchhhc
Q 003763 649 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 728 (797)
Q Consensus 649 ~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~ 728 (797)
+.+++++. +.|||||+|||||||||||+|+|+++||+||||+||+|||+|||+|+|| |+.. .++.++.
T Consensus 40 -------~f~~~~~~---g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFarIf~rN~iN~GL-p~~~-~~~~~~~ 107 (156)
T TIGR02084 40 -------DFVKKVKE---GDIIVAGENFGCGSSREHAPIAIKASGISCVIAKSFARIFYRNAINIGL-PIVE-SEEAVDE 107 (156)
T ss_pred -------hHHhhcCC---CCEEEccCcccCCCcHHHHHHHHHHhCCCEEEEehHHHHHHhhhhhCCC-Ceec-CHHHHHH
Confidence 12334532 5799999999999999999999999999999999999999999999996 5543 3455665
Q ss_pred ccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCeEEEEEecCCCHHHHHHHHhcCHHHHHHH
Q 003763 729 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIR 790 (797)
Q Consensus 729 l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~i~~aGGll~~v~~ 790 (797)
+ ..+++++||++.+ +|+ +..+|++|.+.. + ++.+++++++|||++|+++
T Consensus 108 l--~~gd~i~idl~~~--------~v~-~~~~g~~~~~~~-~-~~~~~~il~~GGl~~~~~~ 156 (156)
T TIGR02084 108 I--EEGDEVEVDLEKG--------IIK-NLTKGKEYKATP-F-PEFLQKIMKAGGLLNYVKK 156 (156)
T ss_pred h--CCCCEEEEECCCC--------EEE-EecCCEEEEeec-C-CHHHHHHHHcCCHHHHhhC
Confidence 4 5678999998763 332 224568888883 3 7899999999999999874
No 43
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=306.97 Aligned_cols=173 Identities=28% Similarity=0.363 Sum_probs=125.7
Q ss_pred CcccceEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCC
Q 003763 562 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGP 641 (797)
Q Consensus 562 ~i~~~~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~~ 641 (797)
.+++ ++ .++|||||||||+| ++||+..... ..+.+.|.+..|.+++- . .
T Consensus 68 ~~~G-rv-~k~gDNIdTD~IiP----------a~~l~~~~sn----------~~~~~~l~~~~F~~l~~-~--------~ 116 (246)
T PLN00072 68 TFHG-LC-FVVGDNIDTDQIIP----------AEYLTLVPSK----------PDEYEKLGSYALIGLPA-F--------Y 116 (246)
T ss_pred eEEE-eE-EEeCCCcchhhccc----------HHHhcccccc----------CCCHHHHHHhhhccCCc-c--------h
Confidence 4544 55 79999999999999 5899752100 01246678888877640 0 0
Q ss_pred ceeccCCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCC-ccceec
Q 003763 642 KTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMG-IIPLCF 720 (797)
Q Consensus 642 ~~~~~~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~G-ilpl~~ 720 (797)
..++...|+.. .+ ..|||+|+|||||||||||+|+|+++||+||||+||+|||+|||+|+| +||++.
T Consensus 117 ~~r~v~~Gd~~-----------~~-~~IIVaG~NFGcGSSREhA~~AL~~~GI~aVIA~SFArIF~rN~iN~GLllpi~~ 184 (246)
T PLN00072 117 KTRFVEPGEMK-----------TK-YSIIIGGENFGCGSSREHAPVALGAAGAKAVVAESYARIFFRNSVATGEVYPLES 184 (246)
T ss_pred hhcccCCCCCC-----------CC-ceEEEecCcccCCCcHHHHHHHHHHcCCCEEEECcHHHHHHHHHHhCCcceeecc
Confidence 01111111110 11 369999999999999999999999999999999999999999999999 788874
Q ss_pred CCcchhhcccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCeEEEEEecCCCHHHHHHHHhcCHHHHHHHHH
Q 003763 721 KPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNL 792 (797)
Q Consensus 721 ~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~i~~aGGll~~v~~~~ 792 (797)
+.+.++. +..+++++||+.++ +|+ +..+|++|.+.+. + .+++++++||+++|++++-
T Consensus 185 -~~~~~e~--i~~Gd~i~VDl~~~--------~v~-n~t~g~~~~~~p~--~-~~~~Il~aGGl~~y~r~~g 241 (246)
T PLN00072 185 -EVRICEE--CKTGDVVTVELGNS--------VLI-NHTTGKEYKLKPI--G-DAGPVIDAGGIFAYARKTG 241 (246)
T ss_pred -cHHHHHh--cCCCCEEEEECCCC--------EEE-ECCCCeEEEecCC--H-HHHHHHHcCCHHHHHHhhC
Confidence 3445554 34678899998753 332 2456788888863 3 4999999999999999863
No 44
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.
Probab=100.00 E-value=3.3e-34 Score=287.94 Aligned_cols=163 Identities=26% Similarity=0.395 Sum_probs=122.6
Q ss_pred eEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceecc
Q 003763 567 YCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHI 646 (797)
Q Consensus 567 ~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~~~~~~~ 646 (797)
++....|||||||+|+| ++||+. +++ +.+.+++|.++|+.+. .|. .+.
T Consensus 10 ~~~~l~~dnIDTD~IiP----------~rfl~~--~~~-------------~~l~~~~f~~~R~~~~--~g~-~~~---- 57 (188)
T TIGR00171 10 LVAPLDAANVDTDAIIP----------KQFLKR--ITR-------------TGFGKHLFFDWRFLDA--NGK-EPN---- 57 (188)
T ss_pred EEEECCCCcCcHhhhhH----------HHHhCc--CCH-------------HHHHHhcccccccccc--ccC-CCC----
Confidence 45444489999999999 699985 344 3457889999997421 110 111
Q ss_pred CCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceecCCcchh
Q 003763 647 PTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDA 726 (797)
Q Consensus 647 ~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~ 726 (797)
| .+++++ +.|+. +.|||+|+|||||||||||+|||+.+||+||||+||+|||++||+|+|||||++++.+.+
T Consensus 58 p----~F~ln~-~~~~~---~~IlVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SFa~IF~rN~~nnGll~i~~~~~~i~ 129 (188)
T TIGR00171 58 P----DFVLNQ-PQYQG---ASILLARENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNGLLPIRLSYDEVK 129 (188)
T ss_pred c----chhhcc-cccCC---CcEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCccccCHHHHH
Confidence 1 133443 45654 479999999999999999999999999999999999999999999999999999875555
Q ss_pred hccc--CCCCeEEEEeCCCCcccCCCCcEEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 003763 727 ETHG--LTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 782 (797)
Q Consensus 727 ~~l~--~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~i~~aG 782 (797)
+.+. ...+++++||+..+ +| +..+|+++.+.+ ++..++.+-.|
T Consensus 130 ~~~~~~~~~g~~i~vDl~~~--------~v--~~~~~~~~~f~i---~~~~r~~ll~G 174 (188)
T TIGR00171 130 ELFGQVENQGLQMTVDLENQ--------LI--HDSEGKVYSFEI---DPFRKHCLING 174 (188)
T ss_pred HHHHHhhCCCCEEEEECCCC--------EE--EeCCCeEEEEEe---CHHHHHHHHcC
Confidence 4321 25688999999873 33 334567788884 67888888777
No 45
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=100.00 E-value=1.2e-33 Score=286.75 Aligned_cols=160 Identities=27% Similarity=0.450 Sum_probs=122.7
Q ss_pred eEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceecc
Q 003763 567 YCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHI 646 (797)
Q Consensus 567 ~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~~~~~~~ 646 (797)
+++...|||||||+|+| ++||+. +++ +.|.++.|.++|+... +...|.
T Consensus 10 ~~~~l~~dnIDTD~IiP----------a~fl~~--~~~-------------~~l~~~~f~~~r~~~~---~~~~p~---- 57 (200)
T PRK01641 10 LAVPLDRANVDTDQIIP----------KQFLKR--ITR-------------TGFGKGLFDDWRYLDD---GQPNPD---- 57 (200)
T ss_pred EEEEcCCCCCChhhcch----------HhHcCc--CCH-------------HHHHHhhhcccccccc---CCCCCC----
Confidence 56666699999999999 699975 333 4568889999986432 222221
Q ss_pred CCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceecCCcchh
Q 003763 647 PTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDA 726 (797)
Q Consensus 647 ~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~ 726 (797)
+++++ ++|+. +.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|||||++++.+..
T Consensus 58 ------F~ln~-~~~~~---~~IlVaG~NFGcGSSRE~A~~al~~~Gi~aVIA~SFa~IF~rN~~n~Gll~i~~~~~~i~ 127 (200)
T PRK01641 58 ------FVLNQ-PRYQG---ASILLAGDNFGCGSSREHAPWALADYGFRAVIAPSFADIFYNNCFKNGLLPIVLPEEDVD 127 (200)
T ss_pred ------ccccc-cccCC---CeEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCeEeeCHHHHH
Confidence 23333 56644 479999999999999999999999999999999999999999999999999999765433
Q ss_pred hccc-C--CCCeEEEEeCCCCcccCCCCcEEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 003763 727 ETHG-L--TGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 782 (797)
Q Consensus 727 ~~l~-~--~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~i~~aG 782 (797)
+... + ..++.++||+.++ + |+.. |+++.+.+ ++..++++.+|
T Consensus 128 ~l~~~~~~~~g~~i~vDl~~~--------~--v~~~-~~~~~f~i---~~~~~~~l~~G 172 (200)
T PRK01641 128 ELFKLVEANPGAELTVDLEAQ--------T--VTAP-DKTFPFEI---DPFRRHCLLNG 172 (200)
T ss_pred HHHHHHhcCCCCEEEEEcCCC--------E--EecC-CeEEEEEc---CHHHHHHHHcC
Confidence 3222 2 5678999999873 3 3322 57788874 78899999998
No 46
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=100.00 E-value=8.2e-34 Score=267.19 Aligned_cols=121 Identities=45% Similarity=0.726 Sum_probs=96.2
Q ss_pred ecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCc
Q 003763 571 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 650 (797)
Q Consensus 571 ~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~~~~~~~~~~~ 650 (797)
++|||||||||+|++. +||.+ |++.+.|.+.+|.+.+ |
T Consensus 1 ~~gdnidTD~IiP~~~--------~~~~~--------------~~~~~~l~~~~f~~~~-----------------p--- 38 (121)
T cd01579 1 KVGDNITTDHIMPAGA--------KVLPL--------------RSNIPAISEFVFHRVD-----------------P--- 38 (121)
T ss_pred CCCCcCChhhcCCCCc--------ccccc--------------CCCHHHHHHhhccCCC-----------------c---
Confidence 5899999999999652 46664 3456678888887643 1
Q ss_pred ccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceecCCcchhhccc
Q 003763 651 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG 730 (797)
Q Consensus 651 ~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~ 730 (797)
+.+.+++..+ ..|||||+|||||||||||+|+++.+||+||||+||+|||+|||+|+|||||++++++.++.
T Consensus 39 -----~f~~~~~~~~-~~iiVaG~nFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Gll~i~~~~~~~~~~-- 110 (121)
T cd01579 39 -----TFAERAKAAG-PGFIVGGENYGQGSSREHAALAPMYLGVRAVLAKSFARIHRANLINFGILPLTFADEDDYDR-- 110 (121)
T ss_pred -----hHHhhcccCC-CeEEEcCCcCCCCccHHHHHHHHHHHCCCEEEEccHHHHHHhHHhhcCcceEEecChhhHhh--
Confidence 1123333322 46999999999999999999999999999999999999999999999999999987776664
Q ss_pred CCCCeEEEEeC
Q 003763 731 LTGHERYTIDL 741 (797)
Q Consensus 731 ~~~~~~~~idl 741 (797)
+..|++++||+
T Consensus 111 ~~~gd~i~id~ 121 (121)
T cd01579 111 FEQGDQLELPL 121 (121)
T ss_pred cCCCCEEEcCC
Confidence 45677787764
No 47
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=99.98 E-value=5.9e-34 Score=270.80 Aligned_cols=128 Identities=43% Similarity=0.559 Sum_probs=105.8
Q ss_pred hHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCcccccchHHHHHHhhCCCeEEEeCC
Q 003763 595 KYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGA 674 (797)
Q Consensus 595 ~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~~~~~~~~~~~~~~v~~~a~~y~~~g~~~iiVaG~ 674 (797)
+||+.+|+...++++|+.++.+|++|.+++|.+.++.|.+..+...+.+.+.++++.+++++.+++|+.++.+.||++|+
T Consensus 3 ~~~~~~G~~~~~~~s~idtd~i~p~~~~~~~~~~~l~~~l~~~~r~~~~~~~~~~~~~~f~~~~~~~~~~~~~ilv~~g~ 82 (131)
T PF00694_consen 3 KFLKIKGVAVPDFNSNIDTDQIIPAMFLGTFANTGLGNILFDDWRYGKTGYLPDGEKPDFYLNAPRYKVEGGDILVVGGE 82 (131)
T ss_dssp CCSEEEEEEEEEHHSTGGGHHHSCGGHHHSCGCTTTGGGTTTTSCBSSEEETTTTEEETHHHHHHHHHHTTTEEEEEE-S
T ss_pred ccEEEeCccccccccccccccccHHHHhccccCcchhhhhccCcceeeeeccccCcCCcchhchhhhcccCCCEEEECCC
Confidence 46666666666666666666666677777888888888888777777888899999999999999999888776777789
Q ss_pred ccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceecCC
Q 003763 675 EYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 722 (797)
Q Consensus 675 NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~ 722 (797)
|||||||||||||+++++||+||||+||+|||++||+|+|||||+|++
T Consensus 83 nfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~~N~~n~Gllpl~~~~ 130 (131)
T PF00694_consen 83 NFGCGSSREHAAWALKDLGIRAVIAESFARIFRRNLINNGLLPLEFPE 130 (131)
T ss_dssp SBTBSS--THHHHHHHHTTEEEEEESSB-HHHHHHHHHTT-EEEEESC
T ss_pred cccCCcchHHHHHHHHHhCCeEEEechHHHHHHHHHHhCCceEEEecC
Confidence 999999999999999999999999999999999999999999999975
No 48
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.96 E-value=1.9e-30 Score=232.05 Aligned_cols=73 Identities=33% Similarity=0.522 Sum_probs=64.4
Q ss_pred eEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceecCCcchhhcccCCCCeEEEEeC
Q 003763 668 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDL 741 (797)
Q Consensus 668 ~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~~~~~~~~~idl 741 (797)
.|||+|+|||||||||||+|+++++||++|||+||+|||++||+|+|+||+++.++..++ .....+++++||+
T Consensus 19 ~ilVaG~nfG~GSSRE~A~~al~~~Gi~avia~sFa~If~~N~~n~Gllp~~~~~~~~~~-~~~~~g~~i~vdl 91 (91)
T cd01577 19 DIIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFARIFFRNAINNGLLPVTLADEDVEE-VEAKPGDEVEVDL 91 (91)
T ss_pred CEEEecCcccCCCcHHHHHHHHHHhCCCEEEEchHHHHHHhhHhhCCCcceeeChhhhhH-hhcCCCCEEEEeC
Confidence 499999999999999999999999999999999999999999999999999998776654 2345667777764
No 49
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=99.96 E-value=1.1e-29 Score=225.65 Aligned_cols=71 Identities=44% Similarity=0.579 Sum_probs=64.5
Q ss_pred eEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceecCCcchhhcccCCCCeEEEEe
Q 003763 668 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTID 740 (797)
Q Consensus 668 ~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~~~~~~~~~id 740 (797)
+|||+|+|||||||||||+|+++++|+++|||+||+|||++|++|+|+|||+|++..+++.+ ..+++++||
T Consensus 17 ~iiVaG~nfG~GSSRE~A~~al~~~Gi~aVia~sfa~If~rN~~n~Gll~l~~~~~~~~~~i--~~gd~l~id 87 (88)
T cd00404 17 GVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADPEDYLKL--HTGDELDIY 87 (88)
T ss_pred EEEEecCCeecCCCHHHHHHHHHHhCCCEEEEeCHHHHHHhhHHhcCCceEEecCcchhhhc--CCCCEEEeC
Confidence 59999999999999999999999999999999999999999999999999999987777653 556777665
No 50
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.95 E-value=1e-28 Score=231.42 Aligned_cols=100 Identities=26% Similarity=0.433 Sum_probs=79.6
Q ss_pred cCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCcc
Q 003763 572 FGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEK 651 (797)
Q Consensus 572 ~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~~~~~~~~~~~~ 651 (797)
..|||+||+|+| ++||..... +.|.|.+..|.+.+ |
T Consensus 2 ~~DnInTD~IiP----------~~y~~~~~~-------------~~e~la~~~~e~~d-----------------p---- 37 (129)
T cd01674 2 DADNLNTDGIYP----------GKYTYQDDI-------------TPEKMAEVCMENYD-----------------S---- 37 (129)
T ss_pred CccccchhccCc----------ccccccCCC-------------CHHHHHHhhcccCC-----------------c----
Confidence 469999999999 478832111 34566777776543 1
Q ss_pred cccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceecCC
Q 003763 652 LSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 722 (797)
Q Consensus 652 ~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~ 722 (797)
+.+.+.+ .+.|||+|+|||||||||||+|+++.+||++|||+||+|||+||++|+|+|||++++
T Consensus 38 ----~f~~~v~---~gdilVaG~nFG~GSSRE~A~~al~~~Gi~~VIA~SFa~If~rN~iN~Gl~~i~~~~ 101 (129)
T cd01674 38 ----EFSTKTK---QGDILVSGFNFGTGSSREQAATALLAKGIPLVVSGSFGNIFSRNSINNALLSIELPF 101 (129)
T ss_pred ----hhhhcCC---CCCEEEeCCccCCCCcHHHHHHHHHHcCccEEEechHHHHHHHhhHhcCCCeEechH
Confidence 1122222 257999999999999999999999999999999999999999999999999999975
No 51
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=99.94 E-value=1.7e-27 Score=279.22 Aligned_cols=167 Identities=20% Similarity=0.260 Sum_probs=122.2
Q ss_pred CCcccceEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCC
Q 003763 561 HGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVG 640 (797)
Q Consensus 561 ~~i~~~~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~ 640 (797)
..|++ +| +|+|||||||||||| +|+.. |.|.+.+.+..|.+.+
T Consensus 164 ~~i~g-~V-~KvgdnInTD~I~Pa----------~~~~~--------------Rsdipl~a~~~~e~~~----------- 206 (835)
T PRK09238 164 EKITV-TV-FKVTGETNTDDLSPA----------PDAWS--------------RPDIPLHALAMLKNRR----------- 206 (835)
T ss_pred cccEE-EE-EEeCCCCchhccCCc----------ccccc--------------CCCHHHHHHHhccCCC-----------
Confidence 34554 55 899999999999995 56643 3455655555554432
Q ss_pred CceeccCCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhh------------hcCccEEEecchhhHhhh
Q 003763 641 PKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPM------------LLGVKAVIAKSFERIHRS 708 (797)
Q Consensus 641 ~~~~~~~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~------------~lGv~aVIA~SFarIf~~ 708 (797)
| .+.++.++++..| ..|||+|+|||||||||||++++. ..++++|||+||+||||+
T Consensus 207 ------p-----~f~~~i~~~~~~G-~~IivaG~nfG~GSSREhA~~al~~~~G~~ip~vP~k~~g~~VIa~SfArIFf~ 274 (835)
T PRK09238 207 ------P-----GPIKQIEELKKKG-HPVAYVGDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRAGGVVLGGKIAPIFFN 274 (835)
T ss_pred ------C-----cHHHHHHhhccCC-CEEEEECCCEeCCcCHHHHHHHHHHhhCCccccccccceEEEEEeCchHHHHHh
Confidence 1 1233444444355 359999999999999999999973 222499999999999999
Q ss_pred hcccCCccceecCCcchhhcccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCeE-EEEEecCCCHHHHHHHHhcCHHHH
Q 003763 709 NLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKS-FTCVIRFDTEVELAYFDHGGILQY 787 (797)
Q Consensus 709 Nlin~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~-~~~~~~~~~~~e~~i~~aGGll~~ 787 (797)
|++|+|+|||+++ ++. +..|+.++||+.++ +| ...+|+. +.+.+ .++.+++++++||++||
T Consensus 275 Nain~GlLpIe~d----~~~--i~~Gd~i~Id~~~g--------~I--~~~~g~~~~~f~l--~p~~~~div~AGGli~~ 336 (835)
T PRK09238 275 TMEDSGALPIELD----VSK--LNMGDVIDIYPYKG--------KI--RNETGEVIATFKL--KTDVLLDEVRAGGRIPL 336 (835)
T ss_pred hhHHcCCceEEeC----HHH--cCCCCEEEEECCCC--------EE--EeCCCeEEEEEec--CcHHHHHHHHcCChHHH
Confidence 9999999999995 333 34688999998763 23 2244433 66665 47899999999999999
Q ss_pred HHHHHhh
Q 003763 788 VIRNLIN 794 (797)
Q Consensus 788 v~~~~~~ 794 (797)
++.|-+.
T Consensus 337 i~gr~l~ 343 (835)
T PRK09238 337 IIGRGLT 343 (835)
T ss_pred HHhcccH
Confidence 9988653
No 52
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=99.91 E-value=1.5e-25 Score=212.71 Aligned_cols=67 Identities=22% Similarity=0.270 Sum_probs=58.1
Q ss_pred eEEEeCCccCCCCcchhhhhhhh------------hcCccEEEecchhhHhhhhcccCCccceecCCcchhhcccCCCCe
Q 003763 668 TVILAGAEYGSGSSRDWAAKGPM------------LLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHE 735 (797)
Q Consensus 668 ~iiVaG~NfG~GSSRE~Aa~a~~------------~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~~~~~~ 735 (797)
.|||+|+|||||||||||+++++ .+|++||||+||+|||+||++|+|+||++++.. . +..++
T Consensus 52 ~ilvaG~nFG~GSSRe~A~~aL~w~~g~~~~~~~~~~g~~aVia~sfa~IF~rNa~n~Gl~~i~~~~~----~--~~~GD 125 (131)
T cd01576 52 PVAYVGDVVGTGSSRKSATNSVLWHTGKDIPFVPNKRAGGVVLGGKIAPIFFNTAEDSGALPIQLDVS----V--LDMGD 125 (131)
T ss_pred eEEEECCceeeccchHHHHHHHHHHhccccccccccceEEEEEeCchhHHHHhhHHHcCCceEEeCHH----H--cCCCC
Confidence 49999999999999999999998 779999999999999999999999999988621 1 34566
Q ss_pred EEEEe
Q 003763 736 RYTID 740 (797)
Q Consensus 736 ~~~id 740 (797)
.+++|
T Consensus 126 ~l~vD 130 (131)
T cd01576 126 ILNID 130 (131)
T ss_pred EEEeC
Confidence 66654
No 53
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=99.91 E-value=1.6e-24 Score=253.80 Aligned_cols=165 Identities=20% Similarity=0.242 Sum_probs=121.3
Q ss_pred CCcccceEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCC
Q 003763 561 HGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVG 640 (797)
Q Consensus 561 ~~i~~~~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~ 640 (797)
..|++ + +.++||+|+||+||| |+||..| .+.+.+.+..|.+.+ ++
T Consensus 165 ~~i~g-~-V~k~gddinTD~i~P----------a~~a~sr--------------~D~~~~a~~m~~~~~---------p~ 209 (844)
T TIGR00117 165 EKITV-T-VFKVTGETNTDDLSP----------APDAWTR--------------PDIPLHALAMLKNAR---------EG 209 (844)
T ss_pred hheEE-E-EEEeCCCCchhccCC----------hhhhhcC--------------CCHHHHHHHHhhcCC---------cc
Confidence 34554 4 569999999999999 5898763 233344444443322 00
Q ss_pred CceeccCCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhh-------------hhcCccEEEecchhhHhh
Q 003763 641 PKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHR 707 (797)
Q Consensus 641 ~~~~~~~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~-------------~~lGv~aVIA~SFarIf~ 707 (797)
+.+.....++.|. .|+|+|+|||||||||||+.++ +.+| .+|||+||+||||
T Consensus 210 -------------~~~~i~~~~~~Gd-~iivaG~nfG~GSSRe~A~~al~w~~g~~~p~vp~k~~G-~~Via~sfArIFf 274 (844)
T TIGR00117 210 -------------IEPQIEALKQKGF-PVAYVGDVVGTGSSRKSATNSVLWHMGDDIPFVPNKRGG-GLCLGGKIAPIFF 274 (844)
T ss_pred -------------HHHHHHHhccCCC-eEEEeCCceecCcchHHHHHHHHHhccCccccccccccc-ceEEeccChHhhh
Confidence 0111123334443 2999999999999999999999 9999 9999999999999
Q ss_pred hhcccCCccceecCCcchhhcccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCeE-EEEEecCCCHHHHHHHHhcCHHH
Q 003763 708 SNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKS-FTCVIRFDTEVELAYFDHGGILQ 786 (797)
Q Consensus 708 ~Nlin~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~-~~~~~~~~~~~e~~i~~aGGll~ 786 (797)
||++|.|+|||+++ .+. +..|+.++||+.++ . |...+|++ +++.+. ++..++++++||+++
T Consensus 275 rnain~Gl~~ie~~----~~~--l~~GD~i~Id~~~G--------~--I~n~~g~~~~~f~~~--p~~l~div~AGGli~ 336 (844)
T TIGR00117 275 NTMEDSGALPIEVD----VSN--LNMGDVIDIYPYKG--------E--ITNHEGELLATFELK--PETLLDEVRAGGRIP 336 (844)
T ss_pred cchhhcCCCeEEeC----Hhh--cCCCCEEEEECCCC--------E--EEeCCCCEEEEeeeC--CHHHHHHHHcCCchh
Confidence 99999999999886 222 45689999998764 2 32234544 777653 788999999999999
Q ss_pred HHHHHHh
Q 003763 787 YVIRNLI 793 (797)
Q Consensus 787 ~v~~~~~ 793 (797)
|+.-|-+
T Consensus 337 ~i~gr~l 343 (844)
T TIGR00117 337 LIIGRGL 343 (844)
T ss_pred hhhcccc
Confidence 9997755
No 54
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=99.90 E-value=8.1e-25 Score=236.76 Aligned_cols=377 Identities=15% Similarity=0.071 Sum_probs=273.7
Q ss_pred HhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceeccccccc
Q 003763 6 NKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEY 85 (797)
Q Consensus 6 ~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~~E~ 85 (797)
++++..+.+|+|.+ |...+||.+-+...+ .-.....+++..|....-.| .|-. .--++-.-+--.|.||.-..
T Consensus 112 edlr~aAaVv~g~K-ia~n~k~am~vpgsg--lvkk~aeaegld~if~eagF-~wre-agcs~clgmnpd~l~~yerc-- 184 (502)
T KOG0454|consen 112 EDLREAAAVVDGEK-IAVNPKHAMFVPGSG--LVKKVAEAEGLDRIFNEAGF-YWRE-AGCSFCLGMNPDGLCHYERC-- 184 (502)
T ss_pred HHHhhhhhccccce-eEecccceEEecCch--hhHhHHHHHhhHHHHHhhce-ehhh-ccccccccCCchhccHHHHh--
Confidence 45677777899996 999999998876443 11112223333332221112 2321 11123333333689986322
Q ss_pred ccceeecCCCcccC-CeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhhHHHH
Q 003763 86 LGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLT 164 (797)
Q Consensus 86 ~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakDviL~ 164 (797)
+ .+.-.| ....|+||||++.++.+.++.|+++.++.....++...+++|.++.++|.|+.++-..++|+++.
T Consensus 185 -a------stsnRnfEgrqGa~srThlma~s~qfAagi~~~~~~~~~~~~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~~ 257 (502)
T KOG0454|consen 185 -A------STSNRNFEGRQGADSRTHLMAASMQFAAGIGGHDLGFREFTGKDSLKVSPSPFLTLKGESPSVLPAKDLIVS 257 (502)
T ss_pred -h------hccCCCccccccccccchhhhhhHHhhccccccccccccccccccccCCCCceEEeCCCCccccccccchhh
Confidence 1 566677 57899999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHhhhh
Q 003763 165 VTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMF 244 (797)
Q Consensus 165 i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~~~~l~ 244 (797)
++...-..+...+..||-+--. +|+++.|+|||||..|-+-|-.|+|+|--|+-|-....++.. + -|
T Consensus 258 ia~ds~t~i~~~at~e~~s~~s-Sl~m~~F~tLc~vv~dNiDTD~IIP~qfltli~~~~~~~~~f--------~----~~ 324 (502)
T KOG0454|consen 258 IATDSSTDIPRVATMEFSSTTS-SLGMETFHTLCGVVADNIDTDQIIPAQFLTLIPSTGLILSCF--------Y----EV 324 (502)
T ss_pred hhccccccccceecccCCCccc-cccCcceeeeehhhhhhCCcCcccChhhhcccccchhhhhhh--------h----hh
Confidence 9888888888899999977655 899999999999999999999999988777766544333221 1 12
Q ss_pred cccCCCCCC-CcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccCCCcc
Q 003763 245 VDYSEPQSE-RVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPA 323 (797)
Q Consensus 245 ~~~~~~D~~-a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 323 (797)
+.|.+ +.|...+.+|.+..+|....|++ ||.---|+-+
T Consensus 325 ----~~dg~~k~~~~dFv~~vE~~~~~siii~~-DNFGCGSSRE------------------------------------ 363 (502)
T KOG0454|consen 325 ----ALDGLPKSFVTDFVLPVEPLRKYSIIIGG-DNFGCGSSRE------------------------------------ 363 (502)
T ss_pred ----eecCCchhhccceeccccccceeEEEecc-CCcccccccc------------------------------------
Confidence 12333 78899999999999999999988 6643222211
Q ss_pred cccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHH-----HHHc---CcHHHHHhc
Q 003763 324 QLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKY-----LQNS---GLQKYLNHL 395 (797)
Q Consensus 324 ~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~-----l~~~---Gl~~~l~~a 395 (797)
|-.|...++|+|+-..-++.|+ ..|+-++.|+.++ +...+.|..+-+... +-.+ =++.+++..
T Consensus 364 ---HAPv~L~~~GakaivA~Sya~I----FfrN~~atG~l~~--~~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k 434 (502)
T KOG0454|consen 364 ---HAPVCLGAAGAKAIVAPSYARI----FFRNSVATGELPP--LPSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGK 434 (502)
T ss_pred ---cCcchhhhcccceecchhHHHH----HHHhHHhcCCccC--CCceeeecccceecceeeEEcccCCcceeeeeeccc
Confidence 2345567899999999887665 4566788899877 334555555433321 2121 256677778
Q ss_pred CcEEeccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhccc
Q 003763 396 GFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGS 466 (797)
Q Consensus 396 G~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~ 466 (797)
+..=+.|-|..|.++..+ .+....++ +. .|+|+||||++|||....++|||||.+|+|++++|+
T Consensus 435 ~~f~lkP~~~aclV~~ad---~I~~~~~k-e~---mIss~~a~r~e~~~~~eg~~~la~~~~v~~~k~t~~ 498 (502)
T KOG0454|consen 435 VYFKLKPFGDACLVIDAD---GIFAYARK-EG---MISSTEANRPERMGHKEGQIYLASPYTVAASKLTGR 498 (502)
T ss_pred ceeecCcccccCcccCch---HHHHhhcc-cc---ccchhhhcCccccCccccceEEccccchhhhhhcCC
Confidence 886678999999997522 12222222 22 589999999999999999999999999999999998
No 55
>PRK14812 hypothetical protein; Provisional
Probab=99.82 E-value=1.2e-20 Score=176.96 Aligned_cols=91 Identities=27% Similarity=0.333 Sum_probs=71.1
Q ss_pred CCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceecCCcchhhcccCCCCeEEEEeCCCCcccCCCCcEEEEE
Q 003763 678 SGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV 757 (797)
Q Consensus 678 ~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~ 757 (797)
||||||||+||++.+||+||||+||++||++||+|+||||+++++........+..+++++||+.++ +|+
T Consensus 2 cGSSREhA~wAL~~~Gi~aVIA~SFa~IF~~N~~nnGllpi~~~~~~~~~l~~~~~g~~i~vDL~~~----------~v~ 71 (119)
T PRK14812 2 AGSSREHAAWALADYGFKVVIAGSFGDIHYNNELNNGMLPIVQPREVREKLAQLKPTDQVTVDLEQQ----------KII 71 (119)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEchHHHHHHhHHHHCCCCcccCCHHHHHHHhccCCCCEEEEEcCCC----------EEE
Confidence 9999999999999999999999999999999999999999998765444333456788999999873 333
Q ss_pred cCCCeEEEEEecCCCHHHHHHHHhc
Q 003763 758 TDSGKSFTCVIRFDTEVELAYFDHG 782 (797)
Q Consensus 758 ~~~g~~~~~~~~~~~~~e~~i~~aG 782 (797)
.. +.++.+.+ .+..+.-+-+|
T Consensus 72 ~~-~~~~~f~i---~~~~~~~Ll~G 92 (119)
T PRK14812 72 SP-VEEFTFEI---DSEWKHKLLNS 92 (119)
T ss_pred cC-CeEEEEEE---CHHHHHHHHhC
Confidence 32 35677776 34444455555
No 56
>PLN00094 aconitate hydratase 2; Provisional
Probab=99.81 E-value=5.6e-20 Score=215.42 Aligned_cols=119 Identities=21% Similarity=0.257 Sum_probs=99.0
Q ss_pred hHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhh-------------hhcCccEEEecchhhHhhhhcccCCccceecCC
Q 003763 656 DAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 722 (797)
Q Consensus 656 ~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~-------------~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~ 722 (797)
+.-...|+.|.| |+|+|+|||||||||||+.++ +..|+.+ ||+||+||||||++|.|+|||+++
T Consensus 283 ~~i~~lk~~g~~-iivvG~nfG~GSSResA~nsl~w~~g~~ip~vpnK~~G~~~-ia~sfArIFfrnain~G~~~Ie~~- 359 (938)
T PLN00094 283 AQIEELKKKGHP-LAYVGDVVGTGSSRKSATNSVLWFMGDDIPNVPNKRTGGVC-IGGKIAPIFFNTMEDSGALPIEMD- 359 (938)
T ss_pred HHHHHHHHcCCc-eEEECCceecCCchHHHHHHHHHhccCCCcCCccccccceE-eeceecHHHhhchhhcCCceEecc-
Confidence 344677888886 899999999999999999999 9999999 999999999999999999999886
Q ss_pred cchhhcccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCeEE-EEEecCCCHHHHHHHHhcCHHHHHHHHHh
Q 003763 723 GEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSF-TCVIRFDTEVELAYFDHGGILQYVIRNLI 793 (797)
Q Consensus 723 ~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~-~~~~~~~~~~e~~i~~aGGll~~v~~~~~ 793 (797)
.+. +..|+.++||+.++ +|+ +..+|+++ .+.+. ++..++++++||++||++-|-+
T Consensus 360 ---v~~--i~~GD~I~id~~~G--------~I~-n~~~g~~~~~f~~~--p~~l~d~vrAGGli~~i~gr~l 415 (938)
T PLN00094 360 ---VKN--LNMGDVIDIYPYEG--------VVK-RHGTDEVITTFSLK--TPVLLDEVRAGGRIPLIIGRGL 415 (938)
T ss_pred ---Hhh--cCCCCEEEEEcCCC--------EEE-ecCCCeEEEeccCC--ChHHHHHHHcCCcHhhhhcccc
Confidence 222 45688999998763 222 23567777 66653 7789999999999999998755
No 57
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=98.46 E-value=4.1e-07 Score=91.49 Aligned_cols=120 Identities=20% Similarity=0.254 Sum_probs=74.2
Q ss_pred hHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcC------------ccEEEecchhhHhhhhcccCCccceecCCc
Q 003763 656 DAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLG------------VKAVIAKSFERIHRSNLVGMGIIPLCFKPG 723 (797)
Q Consensus 656 ~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lG------------v~aVIA~SFarIf~~Nlin~Gilpl~~~~~ 723 (797)
++-+..|+.|.+.+.| |.--|.||||--|.-...... .-.||...+|.||++-+--.|-||++++-
T Consensus 44 ~~i~~lk~kg~~la~v-GdvvGtGSSRKSa~NSvlW~~G~diP~VPnKr~GGvv~G~~IAPIFfnT~edsGaLPIe~dv- 121 (204)
T PF06434_consen 44 EQIEELKEKGHPLAYV-GDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRTGGVVIGGKIAPIFFNTAEDSGALPIECDV- 121 (204)
T ss_dssp HHHHHHHTTSS-EEEE-EEEEEES---THHHHHHHHHHSEEETTEEEEEE--EEEEEEE-HHHHHHHHHTT-EEEE----
T ss_pred HHHHHHHHcCCcEEEe-cCccccCcccchhhhhhhhhccCCCCCCCccCccCeEECCEEcceEeccccccCCceEEEec-
Confidence 4446778888875555 888999999999987664432 24688999999999999999999998742
Q ss_pred chhhcccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCe-EEEEEecCCCHHHHHHHHhcCHHHHHHHHHhh
Q 003763 724 EDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGK-SFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 794 (797)
Q Consensus 724 ~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~-~~~~~~~~~~~~e~~i~~aGGll~~v~~~~~~ 794 (797)
. .+..|+.++|+.-++ .+...+|+ ..++.+. ++..++-++|||-++++.-|-+.
T Consensus 122 ---~--~l~~Gdvi~I~p~~g----------ki~~~~gev~~~f~l~--p~~l~DevrAGGri~LiiGR~Lt 176 (204)
T PF06434_consen 122 ---S--SLNTGDVITIYPYEG----------KIYKENGEVISTFELK--PQTLLDEVRAGGRIPLIIGRGLT 176 (204)
T ss_dssp ---T--T--TT-EEEEETTTT----------EEEETT--EEEE---S---TCHHHHHHHTSHHHHHHHHHHH
T ss_pred ---c--ccCCCcEEEEecCCc----------EEECCCCCEEEEeecC--chhHHHHHhcCCcEEEEechHHH
Confidence 1 245688899986653 23234443 2334432 45567889999999999887653
No 58
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=96.06 E-value=0.0068 Score=70.26 Aligned_cols=118 Identities=22% Similarity=0.271 Sum_probs=77.0
Q ss_pred HHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcC------------ccEEEecchhhHhhhhcccCCccceecCCcc
Q 003763 657 AAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLG------------VKAVIAKSFERIHRSNLVGMGIIPLCFKPGE 724 (797)
Q Consensus 657 ~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lG------------v~aVIA~SFarIf~~Nlin~Gilpl~~~~~~ 724 (797)
.-+.-++.|++ ++-.|.--|.||||--|.-.....+ ...|+..-.+.||++-+-..|-||++++-
T Consensus 213 ~i~~lk~Kg~~-vayvgdvvGtGSSRkSa~NsvlW~~g~diP~VPnkr~ggivlG~~IaPIFfnT~ed~GalPI~~dv-- 289 (852)
T COG1049 213 QIEALKQKGHP-VAYVGDVVGTGSSRKSATNSVLWHMGDDIPYVPNKRYGGIVLGGKIAPIFFNTMEDAGALPIEVDV-- 289 (852)
T ss_pred HHHHHhhcCce-EEEeccccccCcccccccceeeeecCCCCCCCCccCccceeecCeecceeeeehhhcCCCceEeee--
Confidence 44667888886 5556667999999998865433222 13455566788999999999999998742
Q ss_pred hhhcccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCeEE-EEEecCCCHHHHHHHHhcCHHHHHHHHH
Q 003763 725 DAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSF-TCVIRFDTEVELAYFDHGGILQYVIRNL 792 (797)
Q Consensus 725 ~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~-~~~~~~~~~~e~~i~~aGGll~~v~~~~ 792 (797)
-.+..|+.++|+--++ +++ ...+|+.+ .+.. -++..++-+++||-++.+.-|-
T Consensus 290 ----~~l~~Gdvi~i~py~g--------ki~-~~~~ge~v~~f~l--kt~~lldevrAGgripliiGrg 343 (852)
T COG1049 290 ----SNLEMGDVIDIYPYEG--------KIR-NNNTGEVVATFSL--KTDVLLDEVRAGGRIPLIIGRG 343 (852)
T ss_pred ----ccccccceEEeeccCC--------eee-ccCCCcEEEEeec--CchhHHHHHhcCCceeEEEccc
Confidence 1245577788775442 221 22334322 2332 2678889999999998776543
No 59
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=95.95 E-value=0.02 Score=65.13 Aligned_cols=68 Identities=25% Similarity=0.317 Sum_probs=59.3
Q ss_pred cEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCC
Q 003763 329 DVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGC 404 (797)
Q Consensus 329 ~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gC 404 (797)
+|+.++|| |=--|++.++..|.+| +|+|+++.++++|. -|+.|+..+.+.|+.+.|+++|+.|+.-.|
T Consensus 289 ~~D~V~lG-cPH~S~~El~~ia~ll------~gr~~~~~~~~~i~-t~~~v~~~a~~~G~~~~le~~G~~iv~dTC 356 (400)
T PF04412_consen 289 KVDLVALG-CPHLSLEELREIAELL------EGRKVHPNVPLWIT-TSRAVYELAERMGYVERLEKAGVQIVTDTC 356 (400)
T ss_pred CCCEEEEC-CCCCCHHHHHHHHHHH------hCCCCCCCceEEEE-CCHHHHHHHHhCCHHHHHHHcCCEEEcccc
Confidence 45667775 7888899999999999 89999999988766 688999999999999999999999997665
No 60
>COG1679 Predicted aconitase [General function prediction only]
Probab=94.15 E-value=0.12 Score=57.66 Aligned_cols=69 Identities=22% Similarity=0.282 Sum_probs=57.6
Q ss_pred ccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCC
Q 003763 328 GDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGC 404 (797)
Q Consensus 328 g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gC 404 (797)
++++..+|| |---|.+.++..|.+| +|++-++.+.++|+ -|+.|+.++.++|+++.|+++|..++.-.|
T Consensus 288 ~epdli~iG-cPHaS~~E~~~la~~l------~~r~~~~~~~~~V~-~sr~v~~~a~~~G~~~~le~~g~~vv~DtC 356 (403)
T COG1679 288 GEPDLIALG-CPHASLEELRRLAELL------KGRKRPAGVPLYVT-TSRAVYAQARKEGYLAKLEELGVKVVSDTC 356 (403)
T ss_pred CCCCEEEeC-CCCCCHHHHHHHHHHH------hccCCCCCCCEEEE-cCHHHHHHHhhhhhHHHHHHcCCEEecCce
Confidence 345567776 7777899999999999 88887888777655 689999999999999999999999997553
No 61
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=91.81 E-value=0.38 Score=54.67 Aligned_cols=69 Identities=19% Similarity=0.295 Sum_probs=56.3
Q ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccC
Q 003763 330 VVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG 409 (797)
Q Consensus 330 V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~CiG 409 (797)
+++++| +|=--|.+.++.-|++| +|+++++.++++|. -|+.|+ +.+.|+.+.++++|+.|+.-.|. |+-
T Consensus 279 ~dlv~l-GcPH~Sl~E~~~la~ll------~g~~~~~~~~~~v~-t~r~v~--a~~~g~~~~ie~~G~~i~~DtC~-~v~ 347 (389)
T cd01355 279 PDLVVL-GCPHASLEELRKLADLL------AGRRVAPSVPLYVT-TSRAVY--AKRMGYVDVIEKLGARVLTDTCM-VVS 347 (389)
T ss_pred CCEEEe-cCCCCCHHHHHHHHHHh------cCCccCCCCCEEEE-ccHHHH--HhhccHHHHHHHcCCEEEeeecc-eee
Confidence 556677 57778899999999999 89877777766554 567777 89999999999999999997777 664
No 62
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=40.80 E-value=14 Score=36.05 Aligned_cols=30 Identities=27% Similarity=0.456 Sum_probs=22.7
Q ss_pred eEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccc
Q 003763 567 YCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFN 608 (797)
Q Consensus 567 ~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n 608 (797)
.......+|||||.|+| ++||.. +.+.++.
T Consensus 10 ~~~~~~~s~idtd~i~p----------~~~~~~--~~~~~l~ 39 (131)
T PF00694_consen 10 VAVPDFNSNIDTDQIIP----------AMFLGT--FANTGLG 39 (131)
T ss_dssp EEEEEHHSTGGGHHHSC----------GGHHHS--CGCTTTG
T ss_pred ccccccccccccccccH----------HHHhcc--ccCcchh
Confidence 34567889999999999 589975 5555553
No 63
>COG1833 Uri superfamily endonuclease [Replication, recombination, and repair]
Probab=31.60 E-value=91 Score=30.62 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=21.0
Q ss_pred HHcCcHHHHHhcCcEEeccCCccccCC
Q 003763 384 QNSGLQKYLNHLGFHIVGYGCTTCIGN 410 (797)
Q Consensus 384 ~~~Gl~~~l~~aG~~i~~~gCg~CiG~ 410 (797)
.+..+-..|.+-+-.|.++||+-|---
T Consensus 78 ~Ecela~~ls~~~~~I~gFG~SDc~ck 104 (132)
T COG1833 78 LECELARALSKNFEGIEGFGCSDCKCK 104 (132)
T ss_pred hHHHHHHHHHhcCCccCCCCCCCCCCc
Confidence 345566678888899999999998754
No 64
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=25.29 E-value=61 Score=29.20 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=25.6
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHhCCCccC
Q 003763 334 AITSCTNTSNPSVMLGAALVAKKACELGLEVK 365 (797)
Q Consensus 334 ~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~ 365 (797)
+|++|..|.-.-. .||+.|.+.|.+.|.+++
T Consensus 2 ~vtacp~G~Aht~-lAae~L~~aA~~~G~~i~ 32 (85)
T TIGR00829 2 AVTACPTGIAHTF-MAAEALEKAAKKRGWEVK 32 (85)
T ss_pred EEecCCCcHHHHH-HHHHHHHHHHHHCCCeEE
Confidence 5899999987664 577889899999998877
No 65
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=24.57 E-value=76 Score=32.98 Aligned_cols=75 Identities=20% Similarity=0.196 Sum_probs=44.6
Q ss_pred ceeEEEecC--CHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCC
Q 003763 367 WIKTSLAPG--SGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVH 444 (797)
Q Consensus 367 ~V~~~v~Pg--S~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g 444 (797)
.+...|.|| |..+.+-+.+.|+++.|.+.=.. .-|-=|+|-|+- -|..++.+. .+.....+-=-+-+||.-||+=
T Consensus 38 ~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~-G~Pv~GTCAGlI-lLakei~~~-~~~~~Lg~mdi~V~RNAfGRQ~ 114 (194)
T COG0311 38 GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIAD-GLPVFGTCAGLI-LLAKEILDG-PEQPLLGLLDVTVRRNAFGRQV 114 (194)
T ss_pred cCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHc-CCceEEechhhh-hhhhhhcCC-CCCcccceEEEEEEcccccccc
Confidence 467789999 77788889999999988765333 334457899862 112222210 0001000111256899999973
No 66
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=23.65 E-value=95 Score=30.12 Aligned_cols=33 Identities=36% Similarity=0.557 Sum_probs=26.9
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccC
Q 003763 332 IAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 365 (797)
Q Consensus 332 ~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~ 365 (797)
++.|++|..|=---.| ||+-|-+.|.+.|..|+
T Consensus 4 IVAVTACPtGIAHTyM-AAeaLe~~A~~~g~~IK 36 (122)
T COG1445 4 IVAVTACPTGIAHTYM-AAEALEKAAKKLGVEIK 36 (122)
T ss_pred EEEEecCCchHHHHHH-HHHHHHHHHHHcCCeEE
Confidence 6789999999655555 67888899999998887
Done!