Query 003763
Match_columns 797
No_of_seqs 330 out of 2627
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 03:15:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003763.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003763hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3y_A Iron-responsive element 100.0 6E-220 2E-224 1919.0 59.0 789 1-794 99-888 (888)
2 1c96_A Mitochondrial aconitase 100.0 1E-167 4E-172 1461.9 51.3 658 5-792 82-751 (753)
3 1l5j_A Aconitate hydratase 2; 100.0 2.1E-93 7.2E-98 838.3 34.6 387 1-508 421-837 (865)
4 2pkp_A Homoaconitase small sub 100.0 3.7E-39 1.3E-43 318.9 12.3 156 569-794 7-162 (170)
5 2hcu_A 3-isopropylmalate dehyd 100.0 8.2E-39 2.8E-43 325.3 10.7 182 546-782 4-187 (213)
6 1v7l_A 3-isopropylmalate dehyd 100.0 8.2E-39 2.8E-43 314.3 8.6 151 569-792 7-158 (163)
7 1l5j_A Aconitate hydratase 2; 100.0 7.8E-40 2.7E-44 385.2 1.2 282 438-795 48-355 (865)
8 3vba_A Isopropylmalate/citrama 100.0 1E-37 3.5E-42 308.8 12.7 158 567-793 8-165 (176)
9 3q3w_A 3-isopropylmalate dehyd 100.0 2.8E-35 9.7E-40 296.5 8.1 165 563-782 10-177 (203)
10 3h5j_A 3-isopropylmalate dehyd 100.0 3.4E-34 1.2E-38 281.4 8.2 156 565-782 11-169 (171)
11 2r4q_A Phosphotransferase syst 39.6 23 0.0008 32.0 3.8 33 332-365 5-37 (106)
12 2r48_A Phosphotransferase syst 38.4 26 0.00087 31.8 3.9 33 332-365 5-37 (106)
13 2kyr_A Fructose-like phosphotr 30.2 34 0.0011 31.3 3.3 33 332-365 8-40 (111)
14 2m1z_A LMO0427 protein; homolo 27.3 40 0.0014 30.5 3.2 33 332-365 5-37 (106)
No 1
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=100.00 E-value=6.2e-220 Score=1918.98 Aligned_cols=789 Identities=61% Similarity=1.078 Sum_probs=747.7
Q ss_pred ChHHHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceecc
Q 003763 1 MRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQ 80 (797)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (797)
||++++++|+||.++||.+|+++++||++|++..+..++..+|+.++|+||+|+|+||+|++++|.+++|+|||+|||||
T Consensus 99 mr~a~~~~g~d~~ki~p~~pv~lv~DH~v~~~~~~~~da~~~n~~~e~~rN~e~~~fL~w~~~~f~~~~~~~pG~GI~Hq 178 (888)
T 2b3y_A 99 MRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQ 178 (888)
T ss_dssp HHHHHHHTTCCGGGSSCSSCEEEECCSSCCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECTTSCCHHH
T ss_pred HHHHHHhcCCChhhcCCCCCeeEEeCCCCCcCCccccCHHHHHHHHHHHHhcchHHHHHHHHHhccCCCCCCCCCCCcce
Confidence 68899999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred cccccccceeecCCCcccCCeEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhh
Q 003763 81 VNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATD 160 (797)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakD 160 (797)
|++||||++|+.++|+++|+|+|||||||||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||||||
T Consensus 179 v~lE~la~~v~~~~G~~~P~tlVGtDSHT~t~GglG~la~GVGg~eae~~mag~~~~~~~PevvgV~ltG~L~~gVtakD 258 (888)
T 2b3y_A 179 VNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTD 258 (888)
T ss_dssp HHHHTTCCSEEEETTEEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEECCCEEEEEEESCCCTTCCHHH
T ss_pred ehhhhccccccccCcccccCeEEecCCCccccCcceeEEEccCHHHHHHHHhcCcEeecCCCEEEEEEEccCCCCcchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHH
Q 003763 161 LVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRA 240 (797)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~~ 240 (797)
|||+|+++|+++|++||+|||+||||++||+++|||||||++|+|||+||||+|++|++||+.+||++++++++++|+++
T Consensus 259 viL~i~~~l~~~G~vGk~vEF~G~gv~~LS~~~R~TI~NMa~E~GAt~g~fp~De~T~~YL~~~gr~~~~~~~~e~y~~a 338 (888)
T 2b3y_A 259 IVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQA 338 (888)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccceEEEEecCccccccccchhhhhhcchhhCCeeEEecCcHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred hhhhcccCCCC-CCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccC
Q 003763 241 NKMFVDYSEPQ-SERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFH 319 (797)
Q Consensus 241 ~~l~~~~~~~D-~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (797)
+++|++. .+| ++|.|+++++||||+|+|+||||++|||++||++++++|.+++..+++++|+..+.......++++|+
T Consensus 339 ~~l~~~l-~~d~~dA~Yd~~ieiDLs~leP~VAgP~~P~~~~plse~~~~~~~~l~~~~g~~g~~~~~~~~~~~~~~~~~ 417 (888)
T 2b3y_A 339 VGMFRDF-NDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYD 417 (888)
T ss_dssp HTCCCCT-TCGGGCCCCSEEEEEEGGGCCSEEECSSCTTCEEEGGGHHHHHHHHHHSCSBTTBCCCCGGGTTCEEEEEET
T ss_pred HHHHhcc-CCCCCCCceEEEEEEEhhheeEeecCCCCcccccChHHhhhhHHHhhhcccccccccccchhhcccceeecC
Confidence 9999753 235 89999999999999999999999999999999999998887765543333321110100012346788
Q ss_pred CCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEE
Q 003763 320 GTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHI 399 (797)
Q Consensus 320 g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i 399 (797)
|+++.|.||+|++|||||||||||||+|+||++|||+|+++|+||+||||++|+|||++|++||+++||+++|+++||.|
T Consensus 418 g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l~~aGf~i 497 (888)
T 2b3y_A 418 NTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGFDV 497 (888)
T ss_dssp TEEEEEETTBEEEEEECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHHHHHHHHTSCHHHHHHTTCCB
T ss_pred CccccccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHHhcCCCCCCCceEEEeCCCHHHHHHHHHcCcHHHHHHcCCEE
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCceecChHHHHHHhhcccccccCCCCccccC
Q 003763 400 VGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVG 479 (797)
Q Consensus 400 ~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaAsAiaG~i~~d~~~~plg~~ 479 (797)
++||||+||||+++++++++.+|.+||+++++|||+||||+||||+..+++|||||+|||||||+|+|++|+++||++.+
T Consensus 498 ~~~GC~~CiG~~~~l~~~~~~~i~~ge~~~~~vsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AiaG~i~~d~~~dpl~~~ 577 (888)
T 2b3y_A 498 VGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGVN 577 (888)
T ss_dssp CCSSCGGGGTCCCCCCHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHHHHHHHCBSCCCTTTSCSEEE
T ss_pred eCCCCcceeCCCCCCCchhhhhhccCCeeEEEEeccCCCcCcCCCCCccccEecCHHHHHHHHhcCeeecccccCccccC
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCccccCCCCCccCCCCCCC
Q 003763 480 KDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPG 559 (797)
Q Consensus 480 ~~G~~v~l~diwP~~~ei~~~~~~~~~p~~~~~~y~~~~~~~~~~~~l~~~~~~~~~w~~~st~i~~pp~f~~~~~~~~~ 559 (797)
++|+++||+||||+.+|+++++.+.+++++|.+.|..++.+++.|+.++.+.++.|+|+++||||++||||++++..+++
T Consensus 578 ~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~St~i~~~p~f~~~~~~~~~ 657 (888)
T 2b3y_A 578 AKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSKSTYIKSPPFFENLTLDLQP 657 (888)
T ss_dssp TTTEEECHHHHCCCHHHHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCCCSSCCCCTTCSSCCCCGGGTTCCSSCCC
T ss_pred CCCCcccccccCCchhhhHHHHHhcCCHHHhhhhhccccCCccccccCCCCCCCccccCCCcccccCCCCccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999888888
Q ss_pred CCCcccceEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCC
Q 003763 560 PHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEV 639 (797)
Q Consensus 560 ~~~i~~~~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~ 639 (797)
++++.++++|+++|||||||||||||+|+++||||+||+++|+++++|||||+||||||||+||+|+|||+.|+|.+ .+
T Consensus 658 ~~~~~~~~~l~~~gdnitTDhIsPAg~i~~~s~ag~~L~~~gv~~~~f~syg~rRgn~~vm~rg~F~n~r~~n~l~~-~~ 736 (888)
T 2b3y_A 658 PKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLLNRFLN-KQ 736 (888)
T ss_dssp CCCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHHHHHHTTCCGGGCCCTGGGTTCHHHHHHTTTCCTTCEETTTT-EE
T ss_pred cccccCcEEEEEecCCccccccccCccccCCCHHHHHHHhcCCChHHhccccccccCHHHHhhhccccccccccccc-cc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999986 89
Q ss_pred CCceeccCCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCcccee
Q 003763 640 GPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLC 719 (797)
Q Consensus 640 ~~~~~~~~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~ 719 (797)
|++|.++|+|+.+++||++++|+++|.++|||||+|||||||||||||+++++||+||||+||+|||++||+|||||||+
T Consensus 737 g~~t~~~p~g~~~~~~d~a~~y~~~g~~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~Nli~~Gllpl~ 816 (888)
T 2b3y_A 737 APQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLE 816 (888)
T ss_dssp CSEEEETTTTEEEEHHHHHHHHHHTTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEESCBCHHHHHHHHHHTCEEEE
T ss_pred CCceeecCCCccccchhhHHHHHhcCCceEEECCCCCCCCccHHHHHHHHHHcCeeEEEEhhHHHHHHhhhhhcCCceEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhcccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCeEEEEEecCCCHHHHHHHHhcCHHHHHHHHHhh
Q 003763 720 FKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 794 (797)
Q Consensus 720 ~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~i~~aGGll~~v~~~~~~ 794 (797)
|+++++++++++.++++++|++.+ .++||+.+++...+|++|++.++++++.|++|+++||+|||+++++++
T Consensus 817 ~~~~~~~~~~~~~~~~~i~i~l~~---~~~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~~~~ 888 (888)
T 2b3y_A 817 YLPGENADALGLTGQERYTIIIPE---NLKPQMKVQVKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKMAK 888 (888)
T ss_dssp ECTTCCHHHHTCCSCSCEEECCCS---SCCTTCEEEEEETTSCEEEEEECCCSHHHHHHHHHTSHHHHHHHHHHC
T ss_pred ecccccHHHhccCCCceEEEEccc---ccCCCcEEEEEeCCCeEEEEEecCCCHHHHHHHHcCCHHHHHHHHhhC
Confidence 999999998888888999999764 488998776644678899999998999999999999999999999863
No 2
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=100.00 E-value=1.1e-167 Score=1461.91 Aligned_cols=658 Identities=31% Similarity=0.480 Sum_probs=568.8
Q ss_pred HHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceecccccc
Q 003763 5 MNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLE 84 (797)
Q Consensus 5 ~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~~E 84 (797)
++.+|.++ |..|..+++||++|++..++. ++..++.+|.|+|+|++|.+++| |++|+|||+||||||++|
T Consensus 82 l~~~G~~~----v~~P~~~~~DH~v~~~~~~~~-----d~~~~~~~n~e~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E 151 (753)
T 1c96_A 82 FISSGLPK----VAVPSTIHCDHLIEAQLGGEK-----DLRRAKDINQEVYNFLATAGAKY-GVGFWRPGSGIIHQIILE 151 (753)
T ss_dssp HHHHTCSS----CSSCEEEECCSSCCBSSCHHH-----HHHHHHHHTHHHHHHHHHHHHHH-TCEEECTTSBCHHHHHHH
T ss_pred HHHhCCCC----CCCCCceecCCCCCCCCCccc-----chhhhhhhHHHHHHHHHHHHHHC-CCEEECCCCCeeCeEecc
Confidence 45577774 445566899999999865432 35678999999999999999999 899999999999999999
Q ss_pred cccceeecCCCcccCC-eEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchhhHHH
Q 003763 85 YLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVL 163 (797)
Q Consensus 85 ~~a~~v~~~~G~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtakDviL 163 (797)
+ +++|+ ++|||||||||+||||+||||||++|++++|+||+|||++||+|+|+|+|+|++|||+|||||
T Consensus 152 ~----------~~~Pg~~ivGtDSHT~t~GalG~la~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL 221 (753)
T 1c96_A 152 N----------YAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVIL 221 (753)
T ss_dssp H----------TCCTTCEEEESSTTGGGGGGGTCEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHH
T ss_pred c----------ccCCCcEEecCCCCCCccchhhhheeccCHHHHHHHHhCCeeeccCCcEEEEEEeeecCCCccHHHHHH
Confidence 5 56786 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHhhh
Q 003763 164 TVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKM 243 (797)
Q Consensus 164 ~i~~~l~~~G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D~~t~~yl~~~gr~~~~~~~~~~y~~~~~l 243 (797)
+|+++|+++|++||+|||+||||++||+++|||||||++|+|||+||||+|++|++||+.++|.+ ..+++++|.+ +
T Consensus 222 ~ii~~l~~~G~~g~~vEf~G~gv~~LS~~~R~TI~NMa~E~GA~~gifp~De~T~~YL~~~gr~~-~~~~~~~y~~---~ 297 (753)
T 1c96_A 222 KVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADEFKD---H 297 (753)
T ss_dssp HHHHHHTTTTTTTEEEEEESGGGGGSCHHHHHHHHHHGGGGTCSEEECCCCHHHHHHHHHTTCHH-HHHHHHHTGG---G
T ss_pred HHHHHhccCCcceEEEEEECCccccCCcchhhhhhccchhhCcccccccCcHHHHHHHHhcCCcH-HHHHHHHHHh---h
Confidence 99999999999999999999999999999999999999999999999999999999999999877 4566666654 3
Q ss_pred hcccCCCCCCCcccEEEEEEcCCcccCccCCCCCCCccccCcccchhhhhhcccccCCCccCccccccccceeccCCCcc
Q 003763 244 FVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPA 323 (797)
Q Consensus 244 ~~~~~~~D~~a~Y~~~ieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 323 (797)
| .+|++|.|+++++||||+|+|+||+|++|+|++||+++.+.+.+ ++++
T Consensus 298 l----~~D~~A~Yd~~ieiDls~leP~va~P~~P~~~~~v~e~~~~~~~--------------------------~~~~- 346 (753)
T 1c96_A 298 L----VPDPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEVGSVAEK--------------------------EGWP- 346 (753)
T ss_dssp S----SCCTTCCCSEEEEEEGGGCCCEEECSSSTTCEEEHHHHHHHHHH--------------------------HTCC-
T ss_pred c----cCCCCCceeEEEEEEccccceeecCCCCCcceeEhHHhhhhHhh--------------------------cCCc-
Confidence 4 57999999999999999999999999999999999998864432 0111
Q ss_pred cccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccC
Q 003763 324 QLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYG 403 (797)
Q Consensus 324 ~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~g 403 (797)
-+|++||||||||||++||+.|| .|+|+|+++|+ +++||++|+|||++|+++|+++||+++|+++||.|++||
T Consensus 347 ----~~Vd~~~IGSCTN~~~~Dl~~AA-~ilkga~~~~v--~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~g 419 (753)
T 1c96_A 347 ----LDIRVGLIGSCTNSSYEDMGRSA-AVAKQALAHGL--KCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANA 419 (753)
T ss_dssp ----CBEEEEEEBTTTBCSHHHHHHHH-HHHHHHHTTTC--CCSSEEEECCSBHHHHHHHHHTTHHHHHHHTTEEECCSS
T ss_pred ----cceEEEEEecCCCCCHHHHHHHH-HHhccHhhcCC--CCCceEEEeCCCHHHHHHHHHcCcHHHHHHcCcEEecCC
Confidence 15889999999999999966555 56688887665 566999999999999999999999999999999999999
Q ss_pred CccccCCCCCCc-hHHHhhhccCceEEEeeeccCCCCCCCCC-CccCCceecChHHHHHHhhcccccccCCCCccccCCC
Q 003763 404 CTTCIGNSGDID-DAVAAAITENDIVAAAVLSGNRNFEGRVH-PLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKD 481 (797)
Q Consensus 404 Cg~CiG~~g~l~-~~~~~~i~~~~~~~~~vsS~NRNF~GR~g-~~~~~~yLaSP~~vaAsAiaG~i~~d~~~~plg~~~~ 481 (797)
||+|+||+++.. ..+ +++ ++|||+||||+|||| +..+.+|||||+|||||||+|+|++|+.+||+ .+++
T Consensus 420 Cg~CiG~~~~~~~~~~-----~~~---~~vsT~NRNF~GR~gG~p~~~~yLaSP~~vaA~AiaG~i~~d~~~d~l-~~~~ 490 (753)
T 1c96_A 420 CGPCIGQWDRKDIKKG-----EKN---TIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFL-TGKD 490 (753)
T ss_dssp CGGGGTCBCCCSSCTT-----CCE---EEEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBTTCCTTTCCC-CCSS
T ss_pred ceeeecCCCCcccccC-----Ccc---eEEecccCCcccccCCCCCCceeecCHHHHHHHHHcCCcccCcccccc-cCCC
Confidence 999999998632 111 122 479999999999994 55577999999999999999999999999999 8899
Q ss_pred CceeccccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCC-CCccccCCCCccccCCCCCccCCCCCCCC
Q 003763 482 GKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPS-GTLYAWDPKSTYIHEPPYFKDMTMSPPGP 560 (797)
Q Consensus 482 G~~v~l~diwP~~~ei~~~~~~~~~p~~~~~~y~~~~~~~~~~~~l~~~~-~~~~~w~~~st~i~~pp~f~~~~~~~~~~ 560 (797)
|++++|+| |+.+|+++ .+|. .++..|+.++.+. +..|.|+++|+|++.||+|++ ++.
T Consensus 491 g~~v~l~~--p~~~e~~~--------~~f~-------~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~f~~-----~~~ 548 (753)
T 1c96_A 491 GKKFKLEA--PDADELPR--------AEFD-------PGQDTYQHPPKDSSGQRVAVSPTSQRLQLLEPFDK-----WDG 548 (753)
T ss_dssp CCCCCCCC--CCCCSSCS--------SCCC-------CCSCCEECCCSCCTTCCCCCCTTCSSBCCCCCCCC-----CCS
T ss_pred CCeeeecC--Cccchhhh--------hhcc-------CCccccccCCCCCCcceEeeCCCCccccCCCCCCC-----CCc
Confidence 99999999 88887643 2232 3567788766554 568999999999999999975 345
Q ss_pred CCcccceEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcC--CC
Q 003763 561 HGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLN--GE 638 (797)
Q Consensus 561 ~~i~~~~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~--~~ 638 (797)
.++.++++|+++||+|||||||||| +||++ ||+|+|++ .|.|.. +.
T Consensus 549 ~~~~~~~vL~klgd~iTTDhIsPAG---------~~L~~----------------------rg~f~ni~-~n~l~~~~~~ 596 (753)
T 1c96_A 549 KDLEDLQILIKVKGKCTTDHISAAG---------PWLKF----------------------RGHLDNIS-NNLLIGAINI 596 (753)
T ss_dssp SCEEEEEEEEEBCSCCBHHHHBCCG---------GGGGG----------------------TBCHHHHG-GGBTTTSBBT
T ss_pred cccccceEEEeccCCcccccccccc---------hhhcc----------------------ccchhhhh-hhhccccccc
Confidence 6899999999999999999999986 79986 46788887 566542 22
Q ss_pred CCC---ceeccCCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCc
Q 003763 639 VGP---KTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGI 715 (797)
Q Consensus 639 ~~~---~~~~~~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gi 715 (797)
+++ ++.+.|+++.+.++|++++|+++|.++|||||+|||||||||||||+++++||+||||+||+||||+||+||||
T Consensus 597 ~~g~~~~~~~~~~~~~~~~~d~a~~y~~~g~~~iivag~n~G~GSSRe~Aa~~~~~~Gi~avIa~sfarI~~~N~i~~Gl 676 (753)
T 1c96_A 597 ENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGL 676 (753)
T ss_dssp TTCCBSCEECTTTCCEECHHHHHHHHHHHTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEESCBCHHHHHHHHHTTC
T ss_pred cCCCcceeEEecCCcccccHHHHHHHHHhCCCeEEEecCcCCCCcchHHHHhhHHHcCeeEEEehhHHHHHHhhhhhcCC
Confidence 333 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceecCCcchhhcccCCCCeEEEEeCCCCcccCCCCcEEEE--EcCCCeEEEEEecC-CCHHHHHHHHhcCHHHHHHHHH
Q 003763 716 IPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRV--VTDSGKSFTCVIRF-DTEVELAYFDHGGILQYVIRNL 792 (797)
Q Consensus 716 lpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v--~~~~g~~~~~~~~~-~~~~e~~i~~aGGll~~v~~~~ 792 (797)
|||+|+++++++. +.++|+++|+. +.++.+|+.+++ +..+|+++++.+.+ +++.|++|+++||+|||++++.
T Consensus 677 lpl~~~~~~~~~~--l~~gd~i~I~g---l~~l~~g~~v~~~i~~~~g~~~~~~~~~~~t~~e~~~~~aGGlLnyvk~~~ 751 (753)
T 1c96_A 677 LPLTFADPADYNK--IHPVDKLTIQG---LKDFAPGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRMKELQ 751 (753)
T ss_dssp EEEEESSGGGGGG--CCTTCEEEEEC---GGGCCTTCCEEEEEECTTSCEEEEEEECCCCHHHHHHHHHTSHHHHHHHHS
T ss_pred cceeecCcchhhh--cCCCCEEEEcC---hHHcCCCceEEEEEEecCCcEEEEEEeCCCCHHHHHHHHcCCHHHHHHHhh
Confidence 9999998888875 56789999872 335788876654 45667665555432 4999999999999999999863
No 3
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=100.00 E-value=2.1e-93 Score=838.31 Aligned_cols=387 Identities=22% Similarity=0.355 Sum_probs=337.3
Q ss_pred ChHHHHhhCCCCCccCCCCceEEEecCcccCCCCCchhHHHHhhHHHHHHhhhhhhHHhhhccccCcceeeCCCCceecc
Q 003763 1 MRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQ 80 (797)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~l~iDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (797)
||++++++|.+ +++|.. |..++||.++.... ...+++||.++|.+.+|+ .++|||+|||||
T Consensus 421 ~~~~~~~lg~~--~~~~d~-vv~~~dh~~~~~~~---------~~~e~~~~~~~Fa~~~g~-------~~~~pg~GI~Hq 481 (865)
T 1l5j_A 421 TRDELKDLACL--GFSADL-VMQSFCHTAAYPKP---------VDVNTHHTLPDFIMNRGG-------VSLRPGDGVIHS 481 (865)
T ss_dssp HHHHHHHTTCC--SCCSSC-EEECCCSSSSSCCH---------HHHHHHHHHHHHHHTTTC-------EECCTTSBCHHH
T ss_pred HHHHHHHcCCC--cCCCCe-EEEECCCCCcCCCH---------HHHHHHHHHHHHHHHcCC-------eEeCCCCceeee
Confidence 58999999865 688886 88899999887532 345678888888777764 568999999999
Q ss_pred cccccccceeecCCCcccCC-eEEecCCCCCccCcccceeccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCchh
Q 003763 81 VNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTAT 159 (797)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~L~G~l~~gVtak 159 (797)
++.| +++|+ ++|||||||||+||+ |+|.|++|++.+|++|++|+++||+|+|+|+|+|++|||+|
T Consensus 482 ~l~~-----------~~~PG~~ivGtDSHT~~~~Gl---g~g~G~g~vA~a~atG~~~~~vPevv~V~l~G~L~~gVtaK 547 (865)
T 1l5j_A 482 WLNR-----------MLLPDTVGTGGDSHTRFPIGI---SFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLR 547 (865)
T ss_dssp HHGG-----------GCCTTCEEEESSTTCCCSSSE---ECCCCHHHHHHHHHHSBCCEECCCEEEEEEESCCCTTCCHH
T ss_pred eecc-----------cccccceEEeCCCCccccccc---eeCccHHHHHHHHHcCceeecCCCEEEEEEEeeCCCCCChH
Confidence 8643 77896 569999999999975 55779999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhc------------CccceEEEEecCcccccChhhhhhhhccCcccCceeeeecCC-hHHHHHHhh---
Q 003763 160 DLVLTVTQMLRKH------------GVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVD-HVTLQYLKL--- 223 (797)
Q Consensus 160 DviL~i~~~l~~~------------G~~g~~vEf~G~gv~~LS~~~R~Ti~NMa~E~GA~~~~fp~D-~~t~~yl~~--- 223 (797)
||||+|++.++++ |++||+||| +||++||+++|||||||++|+||++|+||+| ++|++||+.
T Consensus 548 DvIL~i~~~~i~~G~l~v~k~g~~~~~~G~~vEf--~Gv~~LS~~~R~TI~NMa~E~GA~~g~f~~dDe~t~~YL~~~~~ 625 (865)
T 1l5j_A 548 DLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIV 625 (865)
T ss_dssp HHHHHHHHHHHHTTSBCSCSTTCCBTTTTSEEEE--ESCTTCCHHHHHHHHHGGGTTTCSEEEECCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccccCcccceeeEEEEE--cccccCChhhhhhHhhcchhcCCeeEEEeCCHHHHHHHHHhhhh
Confidence 9999999887632 347999999 5799999999999999999999999999976 778999998
Q ss_pred -------cCCC-----chhHHHHHHHHHHhhhhcccCCCCCCCcccEEEEEEcCCc-ccCccCCCCCCCccccCcccchh
Q 003763 224 -------TGRS-----DDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADW 290 (797)
Q Consensus 224 -------~gr~-----~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~l-eP~VA~P~~P~~~~~v~e~~~~~ 290 (797)
+||. +++.+.++.|++++.+| .+|++|.|+++++||||+| ||+||+|++|||++|++++++
T Consensus 626 ~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~l----~~D~dA~Y~~~ieiDLs~l~eP~VA~P~~Pd~~~~vse~~~-- 699 (865)
T 1l5j_A 626 LLKWMIAEGYGDRRTLERRIQGMEKWLANPELL----EADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQG-- 699 (865)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHSCCCC----CCCTTCCCSEEEEEEGGGCCSCEEECTTCTTCEEEGGGTTT--
T ss_pred hhhhhhccCCccchhHHHHHHHHHHHHhcccee----ccCCCCcEEEEEEEEcccCCCCEecCCCChHhccchhhhcc--
Confidence 6764 34567788899888887 4799999999999999999 899999999999999999873
Q ss_pred hhhhcccccCCCccCccccccccceeccCCCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccCCceeE
Q 003763 291 HACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKT 370 (797)
Q Consensus 291 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~ 370 (797)
. +|+++|||||||+ ++||+.||.+| ||++++++|++
T Consensus 700 ------------~-------------------------~Id~v~IGSCTtn-~eDl~~AA~il------kg~~v~~~v~~ 735 (865)
T 1l5j_A 700 ------------E-------------------------KIDEVFIGSCMTN-IGHFRAAGKLL------DAHKGQLPTRL 735 (865)
T ss_dssp ------------C-------------------------BCCEEEECSTTCC-HHHHHHHHHHH------HHSCSCCSSEE
T ss_pred ------------c-------------------------ccceEEEecCCCC-HHHHHHHHHHH------cCcccCCCCCE
Confidence 1 2458899999877 99999999988 88889999999
Q ss_pred EEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCchHHHhhhccCceEEEeeeccCCCCCCCCCCccCCc
Q 003763 371 SLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRAN 450 (797)
Q Consensus 371 ~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~ 450 (797)
+|+|||++|+++|+++|++++|+++||.|.+||||+|+||++.+ .+|++ ++||+||||+||||+. ..+
T Consensus 736 ~V~PgS~~V~~~l~~eGl~~~l~~aGa~v~~pgCg~CiGn~~~~--------~~ge~---~isTsNRNF~GR~G~~-~~~ 803 (865)
T 1l5j_A 736 WVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARV--------ADGAT---VVSTSTRNFPNRLGTG-ANV 803 (865)
T ss_dssp EECCSBHHHHHHHHHTTHHHHHHHHTCEECCSSCGGGTCSSSCC--------CTTCE---EEESSSCCCTTSSSTT-CEE
T ss_pred EEECCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCcC--------CCCCE---EEecCCcCCCCCCCCC-cce
Confidence 99999999999999999999999999999999999999998654 34665 6799999999999965 578
Q ss_pred eecChHHHHHHhhcccccccCCCCccccCCCCceeccccCCCChHHHHHHhhhccCch
Q 003763 451 YLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPD 508 (797)
Q Consensus 451 yLaSP~~vaAsAiaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~p~ 508 (797)
|||||++||||||+|+| |+.+|+.+++...++|+
T Consensus 804 yLaSP~~vAAsAiaG~i------------------------~~p~e~~~~~~~~~~~~ 837 (865)
T 1l5j_A 804 FLASAELAAVAALIGKL------------------------PTPEEYQTYVAQVDKTA 837 (865)
T ss_dssp EECCHHHHHHHHHHSBC------------------------CCHHHHHHHHHHHHTTH
T ss_pred EECCHHHHHHHHhCCcC------------------------CCHHHHHHHHHhhcCCc
Confidence 99999999999999998 45667777777777773
No 4
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.7e-39 Score=318.89 Aligned_cols=156 Identities=31% Similarity=0.517 Sum_probs=127.4
Q ss_pred EeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCC
Q 003763 569 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 648 (797)
Q Consensus 569 l~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~~~~~~~~~ 648 (797)
++++|||||||||+| ++||+. .|.+.+.+.+|.++| |
T Consensus 7 v~~~~dnIdTD~IiP----------a~~l~~---------------~~~~~l~~~~f~~~~-----------------p- 43 (170)
T 2pkp_A 7 AHKFGDDVDTDAIIP----------GPYLRT---------------TDPYELASHCMAGID-----------------E- 43 (170)
T ss_dssp EEECCSCCBHHHHSC----------GGGGSC---------------CCHHHHHTTTTTTTC-----------------T-
T ss_pred EEECCCCCChhhcCh----------HHHhCC---------------CCHHHHHHHhcccCC-----------------C-
Confidence 688999999999999 589862 355666788888765 1
Q ss_pred CcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceecCCcchhhc
Q 003763 649 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 728 (797)
Q Consensus 649 ~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~ 728 (797)
+++.+++. ++|||||+|||||||||||||+++++||+||||+||+|||++||+|||||||+|+ ++.
T Consensus 44 -------~f~~~~~~---~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~~ 109 (170)
T 2pkp_A 44 -------NFPKKVKE---GDVIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPIIAN----TDE 109 (170)
T ss_dssp -------THHHHCCT---TCEEEECTTBTBSSCCHHHHHHHHTTTCCEEEESCBCHHHHHHHHHHTCEEEECC----GGG
T ss_pred -------chHHhCCC---CCEEEecCCCCCCCCHHHHHHHHHHhCCcEEEEchHHHHHHhhHHHCCCceEEec----HHH
Confidence 22344543 5899999999999999999999999999999999999999999999999999997 343
Q ss_pred ccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCeEEEEEecCCCHHHHHHHHhcCHHHHHHHHHhh
Q 003763 729 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 794 (797)
Q Consensus 729 l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~i~~aGGll~~v~~~~~~ 794 (797)
+.++++++|++..+ +|+ +..+|+++++. ..++.+++++++||+|||++++++.
T Consensus 110 --l~~gd~i~idl~~~--------~v~-~~~~g~~~~~~--~~~~~~~~~l~aGGll~~~~~~~~~ 162 (170)
T 2pkp_A 110 --IKDGDIVEIDLDKE--------EIV-ITNKNKTIKCE--TPKGLEREILAAGGLVNYLKKRKLI 162 (170)
T ss_dssp --CCTTCEEEEETTTT--------EEE-EGGGTEEEECB--CCCHHHHHHHHTTSHHHHHHHHHHH
T ss_pred --cCCCcEEEEECCCC--------EEE-ECCCCeEEEEE--eCCHHHHHHHHcCCHHHHHHHHHHh
Confidence 56789999997652 332 23567777763 3489999999999999999998764
No 5
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=100.00 E-value=8.2e-39 Score=325.33 Aligned_cols=182 Identities=23% Similarity=0.344 Sum_probs=133.4
Q ss_pred CCCCCccCCCCCCCCCCc--ccceEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccc
Q 003763 546 EPPYFKDMTMSPPGPHGV--KGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARG 623 (797)
Q Consensus 546 ~pp~f~~~~~~~~~~~~i--~~~~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg 623 (797)
..|||.++...+...+.+ ..++++.+.||||||||||| ++||+. +++++| .++
T Consensus 4 ~~~~~~~~~~~~~~M~~f~~~~g~v~~l~~dnIdTD~IiP----------a~~L~~--~~~~~l-------------~~~ 58 (213)
T 2hcu_A 4 MASMTGGQQMGRGSMEEFTIYTGTTVPLMNDNIDTDQILP----------KQFLKL--IDKKGF-------------GKY 58 (213)
T ss_dssp ---------CCCCCCCCCSEEEEEEEEECCSCCCHHHHSC----------GGGGGS--CTTSCC-------------GGG
T ss_pred cccccCCcccccccCCCceEEEEEEEEcCCCCCChhhcch----------HHHhCc--CCHHHH-------------HHH
Confidence 356777766555443333 45688888899999999999 599985 666654 789
Q ss_pred cccchhhhhhhcCCCCCCceeccCCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchh
Q 003763 624 TFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFE 703 (797)
Q Consensus 624 ~F~n~r~~n~~~~~~~~~~~~~~~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFa 703 (797)
+|+++|+.|+ +|+++|. ++.+. ++|+. +.|||||+|||||||||||+|+|+++||+||||+||+
T Consensus 59 ~f~~~r~~~~--~g~~~p~----------f~~~~-~~~~~---~~IlvaG~NfGcGSSREhA~~al~~~Gi~aVIA~SFA 122 (213)
T 2hcu_A 59 LMYEWRYLDN--NYTENPD----------FIFNQ-PEYRE---ASILITGDNFGAGSSREHAAWALADYGFKVIVAGSFG 122 (213)
T ss_dssp TTHHHHBSST--TCCBCTT----------SGGGS-GGGTT---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESCBC
T ss_pred Hhhccccccc--CCCCCCC----------ccccc-hhhcC---CcEEEecCCCCCCCCHHHHHHHHHHhCCcEEEEchHH
Confidence 9999998875 4544431 22222 45654 5899999999999999999999999999999999999
Q ss_pred hHhhhhcccCCccceecCCcchhhcccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 003763 704 RIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 782 (797)
Q Consensus 704 rIf~~Nlin~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~i~~aG 782 (797)
||||+||+|+|||||+|++++....+....+++++||++++ +|+ ..+| ++.+.+ +++.+++|.+|
T Consensus 123 rIF~~N~in~GlLpl~~~~~~~~~l~~~~~G~~i~VDl~~~--------~I~--~~~g-~~~f~i---~~~~k~~l~~G 187 (213)
T 2hcu_A 123 DIHYNNDLNNGILPIIQPKEVRDKLAKLKPTDEVTVNLFEQ--------KIY--SPVG-DFSFDI---DGEWKHKLLNG 187 (213)
T ss_dssp HHHHHHHHTTTCEEEECCHHHHHHHHTSCTTCEEEEETTTT--------EEE--ETTE-EEECCC---CHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCcEEeCHHHHHHHhccCCCCEEEEECCCC--------EEE--ECCc-eEEEeC---CHHHHHHHHcC
Confidence 99999999999999999754333322336788999999874 443 3456 676663 78999999988
No 6
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=100.00 E-value=8.2e-39 Score=314.32 Aligned_cols=151 Identities=34% Similarity=0.538 Sum_probs=123.0
Q ss_pred EeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCC
Q 003763 569 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 648 (797)
Q Consensus 569 l~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~~~~~~~~~ 648 (797)
++++|||||||||+| ++||+ |.|.+.+.+.+|.+++ |
T Consensus 7 ~~~~~dnidTD~IiP----------a~~l~---------------~~~~~~l~~~~f~~~~-----------------p- 43 (163)
T 1v7l_A 7 VWKFGDDISTDEITP----------GRYNL---------------TKDPKELAKIAFIEVR-----------------P- 43 (163)
T ss_dssp EEECCSCCBHHHHSC----------TTSCC---------------CSCHHHHHHHTTTTTC-----------------T-
T ss_pred EEEcCCCCChhccch----------HHHhC---------------CCCHHHHHHHhCCccC-----------------c-
Confidence 679999999999999 47887 2355666777887764 1
Q ss_pred CcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceecCCcchhhc
Q 003763 649 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 728 (797)
Q Consensus 649 ~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~ 728 (797)
+++.+++. ++|||||+|||||||||||||+++++||+||||+||+|||++||+|||||||+|+ ++
T Consensus 44 -------~f~~~~~~---g~iivag~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~- 108 (163)
T 1v7l_A 44 -------DFARNVRP---GDVVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIGIPLLLGK----TE- 108 (163)
T ss_dssp -------THHHHCCT---TCEEECCSSBTBSCCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHHTCCEEESC----CT-
T ss_pred -------chHHhCCC---CCEEEecCcCCCCCCHHHHHHHHHHhCCCEEEEchHHHHHHhhHHHCCCceEEec----HH-
Confidence 23345543 4799999999999999999999999999999999999999999999999999997 33
Q ss_pred ccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCeE-EEEEecCCCHHHHHHHHhcCHHHHHHHHH
Q 003763 729 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKS-FTCVIRFDTEVELAYFDHGGILQYVIRNL 792 (797)
Q Consensus 729 l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~-~~~~~~~~~~~e~~i~~aGGll~~v~~~~ 792 (797)
.+.++++++|++..+ +| + +|++ +++.. .++.+++++++||+|||+++++
T Consensus 109 -~l~~gd~i~idl~~~--------~v--~--~g~~~~~~~~--~~~~~~~~l~aGGll~~~~~~~ 158 (163)
T 1v7l_A 109 -GLKDGDLVTVNWETG--------EV--R--KGDEILMFEP--LEDFLLEIVREGGILEYIRRRG 158 (163)
T ss_dssp -TCCTTCEEEEETTTT--------EE--E--ETTEEEECEE--CCHHHHHHHHTTSHHHHHHHSC
T ss_pred -HcCCCcEEEEEccCC--------EE--E--CCcEEEEEEc--CCHHHHHHHHcCCHHHHHHHHH
Confidence 356789999997753 33 2 5655 66632 3899999999999999999875
No 7
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=100.00 E-value=7.8e-40 Score=385.17 Aligned_cols=282 Identities=20% Similarity=0.250 Sum_probs=215.0
Q ss_pred CCCCCCCCc------cCCceecChHHHHHHhhcccccccCCCCccccCCCCcee-ccccCCCChHHHH----HHhhh-cc
Q 003763 438 NFEGRVHPL------TRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKI-FLRDIWPSSEEVA----HVVQK-SV 505 (797)
Q Consensus 438 NF~GR~g~~------~~~~yLaSP~~vaAsAiaG~i~~d~~~~plg~~~~G~~v-~l~diwP~~~ei~----~~~~~-~~ 505 (797)
=|.+|+.|. +++.||+|| |.+++..+.|+.+..+++||+...|..| +|.|+| +.+|+. +.+.. .+
T Consensus 48 ~~~~rv~pg~~~aa~vKA~fL~~i--~~~~~~~~~i~~~~a~~lLg~m~gG~nv~~L~d~~-~~~~~a~~a~~~l~~~~l 124 (865)
T 1l5j_A 48 LLTNRVPPGVDEAAYVKAGFLAAI--AKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDAL-DDAKLAPIAAKALSHTLL 124 (865)
T ss_dssp HHHHSSCCTTCHHHHHHHHHHHHH--HTTSSCBTTBCHHHHHHHHTTSCSSTTHHHHHHGG-GCTTTHHHHHHHHHTCCT
T ss_pred HHHcCCCCCCChHHHHHHHHHHHH--HhCcccCCccCHHHHHHhcccCCCCCchHHHHHHh-CchhhHHHHHHHHHhhhc
Confidence 377899888 778899999 6689999999999999999999999988 799999 555665 44444 55
Q ss_pred CchhhhhhcccccCCCcccccccCCCCCccccCCCCccccCCCCCccCCCCCCCCCCcccceEEeecCCCcccCccccCC
Q 003763 506 LPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAG 585 (797)
Q Consensus 506 ~p~~~~~~y~~~~~~~~~~~~l~~~~~~~~~w~~~st~i~~pp~f~~~~~~~~~~~~i~~~~vl~~~gd~itTD~I~PAG 585 (797)
..++|.++|+....||+.|+++ ++.|...+-+..+|+. +..+++ .++++|||||||||||
T Consensus 125 ~~d~f~~v~~~~~~gn~~a~~v------l~swa~ae~Ft~~p~~----------~~~i~g--~v~~~~~nIdTD~IiP-- 184 (865)
T 1l5j_A 125 MFDNFYDVEEKAKAGNEYAKQV------MQSWADAEWFLNRPAL----------AEKLTV--TVFKVTGETNTDDLSP-- 184 (865)
T ss_dssp TTTHHHHHHHHHHTTCHHHHHH------HHHHHTTHHHHTSCCC----------CSCEEE--EEEEEEEEEEHHHHSC--
T ss_pred cHHHHHHHHHHHhccCHHHHHH------HHhcccccccccCCCC----------CceEEE--EEEecCCCCchhccCc--
Confidence 6888999999999999999854 7889877644444443 244666 3567899999999999
Q ss_pred CCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCcccccchHHHHHHhhC
Q 003763 586 SIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEG 665 (797)
Q Consensus 586 ~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~~~~~~~~~~~~~~v~~~a~~y~~~g 665 (797)
++||..+ +++ +.+.++.|.++|. .+.+ .++.+. .-+....+++..|
T Consensus 185 --------a~~l~~~-~d~-------------~~~a~~lf~~~r~--~~~p--------~f~~~~--~~~~~i~~~~~~G 230 (865)
T 1l5j_A 185 --------APDAWSR-PDI-------------PLHALAMLKNARE--GIEP--------DQPGVV--GPIKQIEALQQKG 230 (865)
T ss_dssp --------GGGGGGT-TSH-------------HHHGGGTTCSCBT--TBCC--------SBTTTB--CSHHHHHHHHTTS
T ss_pred --------hhhhhcC-CCH-------------HHHHHHHhhcccc--CCCc--------cccccc--cchhhhhhhhcCC
Confidence 5899432 333 3446777886661 1101 111111 0123345676666
Q ss_pred CCeEEEeCCccCCCCcchhhhhhh-------------hhcCccEEEecchhhHhhhhcccCCccceecCCcchhhcccCC
Q 003763 666 HDTVILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLT 732 (797)
Q Consensus 666 ~~~iiVaG~NfG~GSSRE~Aa~a~-------------~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~~~ 732 (797)
. .|+|+|+|||||||||||+|++ +.+| ++|||+||+||||+||+|+|+|||+++ .+. +.
T Consensus 231 ~-~IlvaG~NFGcGSSREhA~~al~~~~g~~~~~~p~k~~G-~~VIA~SFA~IF~~N~~n~Gllpi~~~----v~~--l~ 302 (865)
T 1l5j_A 231 F-PLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGG-GLCLGGKIAPIFFNTMEDAGALPIEVD----VSN--LN 302 (865)
T ss_dssp S-CEEEEEEEEEESCCCTHHHHHHHHHHSEEETTEEEEEEC-CEEEEEEECHHHHHHHHHTTCEEEECC----CTT--CC
T ss_pred C-EEEEECCceecCcchHHHHHHHHHHhcCCCcCCchhhcC-CeEEechHHHHHHHHHHHcCCceEEec----Hhh--cC
Confidence 3 5999999999999999999999 9999 999999999999999999999999995 222 46
Q ss_pred CCeEEEEeCCCCcccCCCCcEEEEEcCCCeE-EEEEecCCCHHHHHHHHhcCHHHHHHHHHhhh
Q 003763 733 GHERYTIDLPSSVSEIRPGQDVRVVTDSGKS-FTCVIRFDTEVELAYFDHGGILQYVIRNLINV 795 (797)
Q Consensus 733 ~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~-~~~~~~~~~~~e~~i~~aGGll~~v~~~~~~~ 795 (797)
.|+.++||+.++ +|+ ...+|++ +++.+ .++++++++++||+++|+++|.+..
T Consensus 303 ~Gd~i~Idl~~g--------~I~-~~~~g~~~~~f~~--~p~~~~~~v~AGGli~~i~~r~l~~ 355 (865)
T 1l5j_A 303 MGDVIDVYPYKG--------EVR-NHETGELLATFEL--KTDVLIDEVRAGGRIPLIIGRGLTT 355 (865)
T ss_dssp TTCEEEEETTTT--------EEE-ETTTCCEEEECCC--SCTHHHHHHHHTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCC--------EEE-EcCCCeEEEEEEe--CCHHHHHHHHcCChhhhhhcchHHH
Confidence 788999998873 332 2356655 66664 4789999999999999999987643
No 8
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1e-37 Score=308.85 Aligned_cols=158 Identities=26% Similarity=0.490 Sum_probs=126.9
Q ss_pred eEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCceecc
Q 003763 567 YCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHI 646 (797)
Q Consensus 567 ~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~~~~~~~ 646 (797)
++ .++|||||||+|+| ++||+. + |.+.+.+.+|.++|
T Consensus 8 ~v-~~~gdnIdTD~IiP----------a~~l~~--~-------------~~~~l~~~~f~~~~----------------- 44 (176)
T 3vba_A 8 RV-WKFGNNVDTDAILP----------ARYLVY--T-------------KPEELAQFVMTGAD----------------- 44 (176)
T ss_dssp EE-EECCSSCBHHHHSC----------GGGTTC--C-------------SHHHHGGGTTTTTC-----------------
T ss_pred EE-EEeCCCcchhhcCc----------HHHhCc--C-------------CHHHHHHhhCcCCC-----------------
Confidence 45 48899999999999 589863 2 44556778887765
Q ss_pred CCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceecCCcchh
Q 003763 647 PTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDA 726 (797)
Q Consensus 647 ~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~ 726 (797)
| +++.+|+. ++|||||+|||||||||||+|+|+++||+||||+||+|||++||+|+|+||++++ +++
T Consensus 45 p--------~F~~~~~~---g~IlVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFA~If~~N~in~Gl~~i~~~--~~~ 111 (176)
T 3vba_A 45 P--------DFPKKVKP---GDIIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGLPLIECK--GIS 111 (176)
T ss_dssp T--------THHHHCCT---TCEEEECTTBTBSSCCTHHHHHHHHTTCCEEEESCBCHHHHHHHHHTTCCEEECT--THH
T ss_pred c--------cHHHhcCC---CCEEEeCCCccCCccHHHHHHHHHHhCCcEEEeccHHHHHHhhHHHcCCCeEEcc--hHH
Confidence 1 13456753 4799999999999999999999999999999999999999999999999888876 334
Q ss_pred hcccCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCeEEEEEecCCCHHHHHHHHhcCHHHHHHHHHh
Q 003763 727 ETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 793 (797)
Q Consensus 727 ~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~i~~aGGll~~v~~~~~ 793 (797)
+. +..+++++||+.++ +|+ ...+|+++.+. .+ ++.+++++++||++||++++..
T Consensus 112 ~~--~~~gd~i~idl~~~--------~v~-~~~~g~~~~~~-~l-~~~~~~ii~aGGli~~~k~~~~ 165 (176)
T 3vba_A 112 EK--VNEGDELEVNLETG--------EIK-NLTTGEVLKGQ-KL-PEFMMEILEAGGLMPYLKKKMA 165 (176)
T ss_dssp HH--CCTTCEEEEETTTC--------EEE-ETTTCCEEECC-CC-CHHHHHHHHHTSHHHHHHHHHH
T ss_pred Hh--cCCCCEEEEECCCC--------EEE-eCCCCeEEEEe-cC-CHHHHHHHHcCCHHHHHHHhcc
Confidence 43 45688999998763 332 23467788776 23 8999999999999999999875
No 9
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Probab=100.00 E-value=2.8e-35 Score=296.54 Aligned_cols=165 Identities=24% Similarity=0.367 Sum_probs=124.5
Q ss_pred cccceEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCc
Q 003763 563 VKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPK 642 (797)
Q Consensus 563 i~~~~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~~~ 642 (797)
+++ +++...+||||||+|+| ++||+. +++++| .+++|.++|+.. +|.+.+.
T Consensus 10 ~~G-~a~~l~~dnIDTD~IIP----------~~fL~~--~~~~~l-------------g~~~f~~~R~~~---~g~~~~~ 60 (203)
T 3q3w_A 10 HKG-IACPLEYANIDTDQIIP----------KQFLLA--VSKQGF-------------GKHLFHDLRYLD---DKESVLN 60 (203)
T ss_dssp EEE-EEEEECCSSCBHHHHSC----------GGGCBS--SCSSCS-------------GGGTTHHHHBSS---SSSCSBC
T ss_pred EEE-EEEECCCcccChhhcch----------HHHcCc--CCHHHH-------------HHhhhhhhhccc---cCCCCCC
Confidence 344 56666679999999999 699974 566655 677999999643 2322111
Q ss_pred eeccCCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceecCC
Q 003763 643 TIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 722 (797)
Q Consensus 643 ~~~~~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~ 722 (797)
| .++.++ ++|+. +.|||||+|||||||||||+|||+.+||+||||+||+|||++||+|+|||||++++
T Consensus 61 ----p----dF~~n~-~~~~~---~~IlVaG~NFGcGSSREhA~~Al~~~Gi~aVIA~SFa~IF~~N~~n~Gll~i~~~~ 128 (203)
T 3q3w_A 61 ----M----DFNLNK-KEYQN---SSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNGLLTIELAK 128 (203)
T ss_dssp ----T----TSGGGS-GGGTT---EEEEEECSSBTBSSCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHTTCEEEECCH
T ss_pred ----C----Chhhcc-cccCC---CCEEEeCCCCCCCCcHHHHHHHHHHcCceEEEECcHHHHHHHHHHhCCCCeEEeCH
Confidence 1 133343 45654 47999999999999999999999999999999999999999999999999999976
Q ss_pred cchhhccc---CCCCeEEEEeCCCCcccCCCCcEEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 003763 723 GEDAETHG---LTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 782 (797)
Q Consensus 723 ~~~~~~l~---~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~i~~aG 782 (797)
........ ...+++++||++.+ +|+ . +|+++.+.+ +++.++.|.+|
T Consensus 129 ~~~~~l~~~~~~~~g~~i~VDL~~~--------~i~--~-~g~~~~f~i---~~~~r~~Ll~G 177 (203)
T 3q3w_A 129 DEVLEIVDELKKSQDKNIEISLLEK--------RVF--F-KDKIFSFDL---DDFHRICLLEG 177 (203)
T ss_dssp HHHHHHHHHHHHCSCCEEEEETTTT--------EEE--E-TTEEEECCC---CHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCCCEEEEECCCC--------EEE--E-CCEEEEEEe---CHHHHHHHHcC
Confidence 53322211 15688999999874 343 2 567777774 78888888887
No 10
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=100.00 E-value=3.4e-34 Score=281.44 Aligned_cols=156 Identities=23% Similarity=0.308 Sum_probs=118.5
Q ss_pred cceEEeecCCCcccCccccCCCCCCCChhhhHHHHcCCCccccccccccCCchhhhccccccchhhhhhhcCCCCCCcee
Q 003763 565 GAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTI 644 (797)
Q Consensus 565 ~~~vl~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rrgn~evm~rg~F~n~r~~n~~~~~~~~~~~~ 644 (797)
..+++.+.|||||||+|+| ++||+. +++++ |.+++|.++|.. |
T Consensus 11 ~G~~~~l~~dnIdTD~IiP----------a~~L~~--~~~~~-------------l~~~~f~~~R~~---------p--- 53 (171)
T 3h5j_A 11 SGIGVPLRRSNVDTDQIIP----------AVFLKR--VTRTG-------------FEDGLFAGWRSD---------P--- 53 (171)
T ss_dssp EEEEEEECCCSCCHHHHSC----------GGGTTC--CSCSC-------------CGGGTTTTGGGS---------T---
T ss_pred EEEEEEccCCccCcccCCc----------hhhcCC--CCHHH-------------HHHHhhccCcCC---------c---
Confidence 3478888899999999999 589985 44444 467889988721 1
Q ss_pred ccCCCcccccchHHHHHHhhCCCeEEEeCCccCCCCcchhhhhhhhhcCccEEEecchhhHhhhhcccCCccceecCCcc
Q 003763 645 HIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGE 724 (797)
Q Consensus 645 ~~~~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~ 724 (797)
+ ++.++ ++|+. +.|||||+|||||||||||+|+++.+||++|||+||+|||++||+|+|+|||++++..
T Consensus 54 ---~----F~~~~-~~~~~---~~IlVaG~NFGcGSSREhA~~al~~~Gi~~VIA~Sfa~If~~N~~n~Gllpi~~~~~~ 122 (171)
T 3h5j_A 54 ---A----FVLNL-SPFDR---GSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVAQDD 122 (171)
T ss_dssp ---T----SGGGS-TTGGG---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESSBCHHHHHHHHHHTCEEEECCHHH
T ss_pred ---C----ccccc-cccCC---CcEEEeCCCccCCcCHHHHHHHHHHhCCcEEEECcHHHHHHhHHHHcCCceEEeCHHH
Confidence 0 22222 35653 4799999999999999999999999999999999999999999999999999998543
Q ss_pred hhhcc---cCCCCeEEEEeCCCCcccCCCCcEEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 003763 725 DAETH---GLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 782 (797)
Q Consensus 725 ~~~~l---~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~i~~aG 782 (797)
..... ....+++++||++++ +|+ . +|+++.+.+ ++..++.|.+|
T Consensus 123 ~~~l~~~~~~~~g~~i~VDl~~~--------~i~--~-~g~~~~F~i---~~~~k~~ll~G 169 (171)
T 3h5j_A 123 VELLWKLIEQSPGLEITANLQDR--------IIT--A-ATVVLPFKI---DDHSAWRLLEG 169 (171)
T ss_dssp HHHHHHHHHHSTTCEEEEETTTT--------EEE--E-TTEEEECBC---CHHHHHHHHHT
T ss_pred HHHHHHHhhcCCCcEEEEECCCC--------EEE--E-CCEEEEEEE---CHHHHHHHHhC
Confidence 22211 115688999999874 333 2 467777765 66777777665
No 11
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=39.58 E-value=23 Score=32.04 Aligned_cols=33 Identities=39% Similarity=0.589 Sum_probs=25.8
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccC
Q 003763 332 IAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 365 (797)
Q Consensus 332 ~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~ 365 (797)
+++|++|.+|----.| ||+.|.+.|.+.|.+++
T Consensus 5 ivaVTaCptGiAhTym-AaeaL~~aA~~~G~~ik 37 (106)
T 2r4q_A 5 ILAVTACPTGIAHTFM-AADALKEKAKELGVEIK 37 (106)
T ss_dssp EEEEEECSCC--CHHH-HHHHHHHHHHHHTCCEE
T ss_pred EEEEecCCCcHHHHHH-HHHHHHHHHHHCCCeEE
Confidence 5789999999766555 77888899999998877
No 12
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=38.37 E-value=26 Score=31.79 Aligned_cols=33 Identities=36% Similarity=0.504 Sum_probs=27.0
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccC
Q 003763 332 IAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 365 (797)
Q Consensus 332 ~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~ 365 (797)
+++|++|.+|----. .||+.|.+.|.+.|.+++
T Consensus 5 ivaVTaCptGiAhTy-mAaeaL~~aA~~~G~~ik 37 (106)
T 2r48_A 5 LLAITSCPNGIAHTY-MAAENLQKAADRLGVSIK 37 (106)
T ss_dssp EEEEEECSSCSHHHH-HHHHHHHHHHHHHTCEEE
T ss_pred EEEEecCCCcHHHHH-HHHHHHHHHHHHCCCeEE
Confidence 578999999976554 477888899999898877
No 13
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=30.22 E-value=34 Score=31.27 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=26.9
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccC
Q 003763 332 IAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 365 (797)
Q Consensus 332 ~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~ 365 (797)
++.|++|.+|----.| ||+.|.+.|.+.|..++
T Consensus 8 IvaVTaCptGiAHTyM-AAeaL~~aA~~~G~~ik 40 (111)
T 2kyr_A 8 LIALCACPMGLAHTFM-AAQALEEAAVEAGYEVK 40 (111)
T ss_dssp EEEEEEESSCHHHHHH-HHHHHHHHHHHTSSEEE
T ss_pred EEEEEcCCCcHHHHHH-HHHHHHHHHHHCCCeEE
Confidence 6789999999765544 77888888889998877
No 14
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=27.30 E-value=40 Score=30.51 Aligned_cols=33 Identities=30% Similarity=0.423 Sum_probs=26.7
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhCCCccC
Q 003763 332 IAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 365 (797)
Q Consensus 332 ~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~ 365 (797)
++.|++|.+|---..| ||+.|.+.|.+.|..++
T Consensus 5 ivaVtaCptGiAhTym-AAeaLekaA~~~G~~ik 37 (106)
T 2m1z_A 5 IIAVTACATGVAHTYM-AAQALKKGAKKMGNLIK 37 (106)
T ss_dssp EEEEEECSSCHHHHHH-HHHHHHHHHHHHTCEEE
T ss_pred EEEEEECCCcHHHHHH-HHHHHHHHHHHCCCEEE
Confidence 5789999999766554 67888888888998876
Done!