Query 003764
Match_columns 797
No_of_seqs 386 out of 2426
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 11:38:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1148 Glutaminyl-tRNA synthe 100.0 1E-220 2E-225 1793.8 52.7 755 7-795 1-764 (764)
2 PLN02859 glutamine-tRNA ligase 100.0 6E-217 1E-221 1861.3 78.6 785 7-797 3-788 (788)
3 PTZ00437 glutaminyl-tRNA synth 100.0 3E-150 7E-155 1269.4 55.9 543 232-796 20-564 (574)
4 PRK05347 glutaminyl-tRNA synth 100.0 4E-147 9E-152 1245.9 55.9 526 261-795 15-554 (554)
5 PRK14703 glutaminyl-tRNA synth 100.0 5E-143 1E-147 1256.7 56.2 528 261-796 17-560 (771)
6 TIGR00440 glnS glutaminyl-tRNA 100.0 6E-143 1E-147 1210.5 51.2 508 275-792 1-522 (522)
7 PLN03233 putative glutamate-tR 100.0 5E-136 1E-140 1152.6 51.4 501 270-792 7-512 (523)
8 PTZ00402 glutamyl-tRNA synthet 100.0 7E-134 2E-138 1144.9 52.6 505 270-791 48-554 (601)
9 PLN02907 glutamate-tRNA ligase 100.0 6E-130 1E-134 1149.0 53.0 501 272-789 211-716 (722)
10 PRK04156 gltX glutamyl-tRNA sy 100.0 9E-119 2E-123 1023.1 57.0 452 272-775 99-556 (567)
11 TIGR00463 gltX_arch glutamyl-t 100.0 1E-117 2E-122 1013.6 48.4 464 272-782 91-557 (560)
12 KOG1147 Glutamyl-tRNA syntheta 100.0 1E-116 3E-121 962.8 38.6 503 270-790 196-704 (712)
13 COG0008 GlnS Glutamyl- and glu 100.0 2.5E-90 5.5E-95 777.3 3.1 448 275-772 10-472 (472)
14 PLN02627 glutamyl-tRNA synthet 100.0 2.8E-74 6.2E-79 651.4 24.6 321 264-611 35-384 (535)
15 PRK12410 glutamylglutaminyl-tR 100.0 7.7E-74 1.7E-78 638.2 22.7 289 276-597 1-304 (433)
16 PF00749 tRNA-synt_1c: tRNA sy 100.0 3.6E-74 7.7E-79 623.2 15.6 306 274-595 1-314 (314)
17 cd00807 GlnRS_core catalytic c 100.0 1.1E-72 2.5E-77 584.3 23.9 238 274-583 1-238 (238)
18 PRK12558 glutamyl-tRNA synthet 100.0 8.2E-72 1.8E-76 624.4 23.5 294 274-597 2-310 (445)
19 KOG1149 Glutamyl-tRNA syntheta 100.0 1E-71 2.2E-76 599.9 19.8 298 273-597 32-352 (524)
20 PRK05710 glutamyl-Q tRNA(Asp) 100.0 1.5E-69 3.3E-74 579.7 25.3 281 272-590 3-298 (299)
21 cd09287 GluRS_non_core catalyt 100.0 2.2E-69 4.7E-74 561.5 23.9 238 274-583 1-240 (240)
22 PRK01406 gltX glutamyl-tRNA sy 100.0 2.8E-69 6.1E-74 612.7 25.3 298 272-597 2-321 (476)
23 PRK14895 gltX glutamyl-tRNA sy 100.0 1.8E-69 4E-74 611.5 23.5 308 272-611 2-330 (513)
24 TIGR00464 gltX_bact glutamyl-t 100.0 4.1E-68 8.9E-73 602.7 24.9 297 274-597 1-312 (470)
25 TIGR03838 queuosine_YadB gluta 100.0 2.3E-67 4.9E-72 557.1 22.6 260 275-571 1-270 (272)
26 cd00418 GlxRS_core catalytic c 100.0 4.8E-62 1E-66 504.6 17.5 222 274-597 1-224 (230)
27 cd00808 GluRS_core catalytic c 100.0 4.3E-58 9.2E-63 478.3 16.9 223 274-597 1-233 (239)
28 PF04558 tRNA_synt_1c_R1: Glut 100.0 8.8E-49 1.9E-53 386.7 14.5 163 7-169 1-164 (164)
29 PF03950 tRNA-synt_1c_C: tRNA 100.0 5.4E-42 1.2E-46 342.9 13.8 171 581-772 1-174 (174)
30 COG0215 CysS Cysteinyl-tRNA sy 99.9 4.4E-27 9.6E-32 261.9 14.1 255 280-575 29-317 (464)
31 PF01406 tRNA-synt_1e: tRNA sy 99.9 2.3E-26 4.9E-31 245.4 9.0 251 280-572 15-298 (300)
32 TIGR00435 cysS cysteinyl-tRNA 99.9 4.4E-24 9.6E-29 243.4 18.4 256 279-576 27-315 (465)
33 PRK00260 cysS cysteinyl-tRNA s 99.9 1.3E-23 2.8E-28 239.8 18.7 262 272-575 21-315 (463)
34 PLN02946 cysteine-tRNA ligase 99.9 1.9E-24 4.2E-29 248.4 11.6 254 280-575 87-372 (557)
35 PRK14534 cysS cysteinyl-tRNA s 99.9 9.1E-24 2E-28 239.5 15.2 250 280-574 28-328 (481)
36 PRK12418 cysteinyl-tRNA synthe 99.9 8.7E-24 1.9E-28 234.4 13.1 259 280-576 16-312 (384)
37 PRK14536 cysS cysteinyl-tRNA s 99.9 2.6E-23 5.6E-28 236.8 16.7 251 280-575 30-329 (490)
38 TIGR03447 mycothiol_MshC cyste 99.9 3E-23 6.6E-28 231.3 13.0 257 280-574 43-337 (411)
39 PRK14535 cysS cysteinyl-tRNA s 99.9 2.2E-22 4.7E-27 233.1 18.7 249 280-574 255-556 (699)
40 PTZ00399 cysteinyl-tRNA-synthe 99.9 2.1E-21 4.5E-26 228.7 14.2 268 273-575 58-364 (651)
41 KOG2007 Cysteinyl-tRNA synthet 99.8 3.9E-21 8.4E-26 212.3 12.6 262 259-561 39-341 (586)
42 cd00671 ArgRS_core catalytic c 99.7 2.9E-17 6.2E-22 169.6 15.0 183 276-515 3-212 (212)
43 PRK11893 methionyl-tRNA synthe 99.6 5.1E-14 1.1E-18 162.7 18.1 273 275-575 4-349 (511)
44 PRK01611 argS arginyl-tRNA syn 99.6 1.9E-14 4E-19 166.6 13.6 225 272-570 110-383 (507)
45 PF04557 tRNA_synt_1c_R2: Glut 99.6 1.2E-15 2.7E-20 135.3 2.3 82 170-267 1-84 (84)
46 cd00802 class_I_aaRS_core cata 99.4 1.6E-13 3.5E-18 132.9 6.8 133 276-514 1-143 (143)
47 cd00668 Ile_Leu_Val_MetRS_core 99.4 4.9E-12 1.1E-16 137.8 18.1 243 277-556 5-304 (312)
48 cd00814 MetRS_core catalytic c 99.3 4.7E-11 1E-15 130.7 19.1 94 275-368 3-116 (319)
49 TIGR00398 metG methionyl-tRNA 99.3 8.5E-11 1.8E-15 136.9 17.4 94 275-368 2-115 (530)
50 cd00672 CysRS_core catalytic c 99.3 2.8E-11 6E-16 125.5 11.1 163 279-559 26-208 (213)
51 PRK00133 metG methionyl-tRNA s 99.1 1.7E-09 3.7E-14 129.5 21.1 94 275-368 5-118 (673)
52 cd00812 LeuRS_core catalytic c 99.1 2.9E-10 6.3E-15 124.3 12.8 93 276-368 4-118 (314)
53 PRK12268 methionyl-tRNA synthe 99.1 4.8E-10 1E-14 131.4 15.4 94 275-368 6-120 (556)
54 PRK00750 lysK lysyl-tRNA synth 99.1 6E-10 1.3E-14 129.2 15.7 251 274-577 24-330 (510)
55 PRK12267 methionyl-tRNA synthe 99.1 2.5E-09 5.4E-14 127.7 20.8 94 275-368 7-120 (648)
56 cd00818 IleRS_core catalytic c 99.1 1.4E-09 3.1E-14 120.1 16.8 91 280-370 9-138 (338)
57 cd00674 LysRS_core_class_I cat 99.1 4.6E-09 9.9E-14 116.5 19.4 236 273-556 19-306 (353)
58 PLN02224 methionine-tRNA ligas 99.1 2.8E-09 6E-14 125.9 18.0 94 275-368 72-185 (616)
59 cd00817 ValRS_core catalytic c 98.8 9.1E-09 2E-13 115.6 9.9 93 276-368 5-135 (382)
60 PF09334 tRNA-synt_1g: tRNA sy 98.8 4.5E-08 9.7E-13 110.4 15.3 101 462-579 279-381 (391)
61 PLN02610 probable methionyl-tR 98.8 2.8E-07 6.2E-12 112.1 22.2 93 275-367 20-133 (801)
62 COG0143 MetG Methionyl-tRNA sy 98.8 7.7E-08 1.7E-12 112.1 15.5 94 275-368 8-121 (558)
63 cd00806 TrpRS_core catalytic c 98.7 1.4E-07 3.1E-12 101.8 13.1 171 282-515 7-197 (280)
64 TIGR00467 lysS_arch lysyl-tRNA 98.7 5.1E-07 1.1E-11 104.9 17.0 95 465-577 224-324 (515)
65 PRK12451 arginyl-tRNA syntheta 98.6 5.9E-07 1.3E-11 105.8 15.5 55 472-541 331-388 (562)
66 TIGR00456 argS arginyl-tRNA sy 98.6 6.5E-07 1.4E-11 105.6 14.6 46 472-517 334-380 (566)
67 PRK13208 valS valyl-tRNA synth 98.4 3E-06 6.5E-11 103.9 15.9 94 275-368 40-169 (800)
68 PLN02286 arginine-tRNA ligase 98.3 6.8E-06 1.5E-10 97.2 15.6 42 273-314 117-161 (576)
69 TIGR00422 valS valyl-tRNA synt 98.3 2.9E-05 6.2E-10 96.1 21.0 93 276-368 37-167 (861)
70 KOG0436 Methionyl-tRNA synthet 98.2 3.9E-06 8.4E-11 92.9 9.3 275 282-579 49-398 (578)
71 COG0018 ArgS Arginyl-tRNA synt 98.2 5.7E-05 1.2E-09 89.0 19.6 230 272-516 116-390 (577)
72 PF00750 tRNA-synt_1d: tRNA sy 98.2 2.3E-05 5.1E-10 87.4 14.5 46 272-317 19-67 (354)
73 PF01921 tRNA-synt_1f: tRNA sy 98.1 1.4E-05 3E-10 88.7 11.7 245 261-554 9-311 (360)
74 TIGR00233 trpS tryptophanyl-tR 98.1 2.9E-05 6.3E-10 85.8 12.2 170 282-516 10-199 (328)
75 PRK12285 tryptophanyl-tRNA syn 98.0 5.1E-05 1.1E-09 85.1 13.4 187 261-516 54-258 (368)
76 COG0180 TrpS Tryptophanyl-tRNA 97.9 8.9E-05 1.9E-09 81.1 11.6 183 282-531 13-215 (314)
77 PRK00390 leuS leucyl-tRNA synt 97.7 6.2E-05 1.3E-09 92.4 8.1 94 275-368 35-150 (805)
78 cd00805 TyrRS_core catalytic c 97.7 0.00076 1.7E-08 72.7 15.3 220 282-577 8-250 (269)
79 TIGR00396 leuS_bact leucyl-tRN 97.6 0.00014 3.1E-09 89.6 9.1 94 275-368 32-147 (842)
80 PRK08560 tyrosyl-tRNA syntheta 97.6 0.00072 1.6E-08 74.9 13.4 188 260-514 17-219 (329)
81 COG1384 LysS Lysyl-tRNA synthe 97.6 0.00068 1.5E-08 77.8 12.8 96 465-577 228-329 (521)
82 PRK12556 tryptophanyl-tRNA syn 97.6 0.00087 1.9E-08 74.4 13.3 180 282-516 11-209 (332)
83 COG2511 GatE Archaeal Glu-tRNA 97.5 0.0024 5.1E-08 73.2 15.7 158 17-184 465-630 (631)
84 TIGR00392 ileS isoleucyl-tRNA 97.4 0.00038 8.3E-09 86.3 8.5 95 275-369 39-172 (861)
85 COG0495 LeuS Leucyl-tRNA synth 97.4 0.00014 3.1E-09 88.1 4.5 92 275-368 37-152 (814)
86 PLN02563 aminoacyl-tRNA ligase 97.4 0.00052 1.1E-08 85.5 9.4 94 275-368 113-229 (963)
87 PLN02943 aminoacyl-tRNA ligase 97.3 0.00059 1.3E-08 85.4 8.9 94 275-368 91-222 (958)
88 PTZ00419 valyl-tRNA synthetase 97.3 0.00054 1.2E-08 86.2 8.4 94 275-368 63-195 (995)
89 PLN02486 aminoacyl-tRNA ligase 97.3 0.0083 1.8E-07 67.9 16.7 78 282-359 81-169 (383)
90 PLN02843 isoleucyl-tRNA synthe 97.2 0.0008 1.7E-08 84.3 8.5 94 275-368 35-164 (974)
91 PRK14900 valS valyl-tRNA synth 97.2 0.00069 1.5E-08 85.5 7.7 94 275-368 51-183 (1052)
92 PRK12282 tryptophanyl-tRNA syn 97.2 0.00098 2.1E-08 74.0 7.9 91 275-376 5-104 (333)
93 PRK05729 valS valyl-tRNA synth 97.1 0.00091 2E-08 83.1 8.0 89 280-368 44-170 (874)
94 PF00579 tRNA-synt_1b: tRNA sy 97.1 0.0013 2.9E-08 71.4 8.4 177 282-519 13-208 (292)
95 PLN02381 valyl-tRNA synthetase 97.1 0.0011 2.3E-08 83.8 8.6 94 275-368 131-263 (1066)
96 PRK05743 ileS isoleucyl-tRNA s 97.1 0.0011 2.4E-08 82.7 8.4 94 275-368 52-180 (912)
97 PF00133 tRNA-synt_1: tRNA syn 97.1 0.0013 2.9E-08 78.4 8.8 94 275-368 26-158 (601)
98 TIGR00134 gatE_arch glutamyl-t 97.1 0.013 2.8E-07 69.9 16.5 157 13-179 452-617 (620)
99 PRK00927 tryptophanyl-tRNA syn 97.0 0.0015 3.2E-08 72.6 7.9 171 282-515 9-199 (333)
100 PTZ00427 isoleucine-tRNA ligas 97.0 0.0014 3E-08 83.5 8.5 92 277-368 107-237 (1205)
101 cd00395 Tyr_Trp_RS_core cataly 97.0 0.0055 1.2E-07 66.3 11.9 174 282-517 7-206 (273)
102 COG0525 ValS Valyl-tRNA synthe 97.0 0.0019 4.2E-08 78.7 8.7 90 279-368 40-167 (877)
103 PRK13354 tyrosyl-tRNA syntheta 97.0 0.031 6.7E-07 64.0 18.0 98 466-578 186-287 (410)
104 PTZ00126 tyrosyl-tRNA syntheta 97.0 0.018 3.9E-07 65.3 15.9 90 260-352 53-155 (383)
105 TIGR00395 leuS_arch leucyl-tRN 97.0 0.0012 2.6E-08 82.5 7.2 94 275-368 28-167 (938)
106 PRK06039 ileS isoleucyl-tRNA s 96.9 0.0019 4.1E-08 81.2 8.4 94 275-368 44-176 (975)
107 PLN02882 aminoacyl-tRNA ligase 96.9 0.002 4.3E-08 82.1 8.2 90 279-368 45-173 (1159)
108 PRK04028 glutamyl-tRNA(Gln) am 96.9 0.022 4.7E-07 68.1 16.0 163 12-184 458-629 (630)
109 PRK05912 tyrosyl-tRNA syntheta 96.7 0.044 9.6E-07 62.7 16.8 88 261-352 22-130 (408)
110 PRK05477 gatB aspartyl/glutamy 96.6 0.047 1E-06 63.4 16.1 157 13-178 302-473 (474)
111 PRK14703 glutaminyl-tRNA synth 96.6 0.038 8.2E-07 67.5 15.8 159 13-179 600-770 (771)
112 KOG0435 Leucyl-tRNA synthetase 96.6 0.0019 4E-08 75.8 4.3 93 273-368 58-175 (876)
113 PRK13804 ileS isoleucyl-tRNA s 96.6 0.0053 1.1E-07 77.1 8.4 94 275-368 57-188 (961)
114 PLN02751 glutamyl-tRNA(Gln) am 96.4 0.084 1.8E-06 62.2 16.4 158 13-179 370-541 (544)
115 TIGR00133 gatB glutamyl-tRNA(G 96.3 0.091 2E-06 61.2 15.7 156 15-178 308-476 (478)
116 cd02156 nt_trans nucleotidyl t 95.7 0.053 1.2E-06 49.9 8.3 39 277-320 2-40 (105)
117 PLN02959 aminoacyl-tRNA ligase 95.6 0.024 5.1E-07 72.1 7.5 31 274-304 46-77 (1084)
118 KOG0432 Valyl-tRNA synthetase 95.3 0.037 8.1E-07 67.0 7.5 92 278-369 81-211 (995)
119 TIGR00395 leuS_arch leucyl-tRN 95.0 0.054 1.2E-06 68.1 8.1 65 494-574 604-669 (938)
120 COG0008 GlnS Glutamyl- and glu 94.4 0.02 4.4E-07 66.4 2.2 66 532-597 257-322 (472)
121 PLN02886 aminoacyl-tRNA ligase 94.4 0.088 1.9E-06 59.8 7.1 92 275-377 49-148 (389)
122 PRK12283 tryptophanyl-tRNA syn 94.2 0.085 1.9E-06 59.9 6.3 67 282-349 10-85 (398)
123 PRK12284 tryptophanyl-tRNA syn 93.9 0.19 4.1E-06 57.7 8.5 87 282-377 10-106 (431)
124 PF02637 GatB_Yqey: GatB domai 93.6 0.28 6E-06 48.2 8.1 102 73-178 43-147 (148)
125 COG0064 GatB Asp-tRNAAsn/Glu-t 93.3 2 4.4E-05 49.9 15.5 157 15-178 310-479 (483)
126 PRK12300 leuS leucyl-tRNA synt 93.3 0.23 5.1E-06 62.3 8.8 61 498-574 566-626 (897)
127 smart00845 GatB_Yqey GatB doma 92.9 0.82 1.8E-05 45.0 10.2 101 73-178 42-146 (147)
128 PLN02943 aminoacyl-tRNA ligase 91.4 0.33 7.2E-06 61.4 6.7 65 496-578 569-634 (958)
129 PTZ00348 tyrosyl-tRNA syntheta 91.2 0.52 1.1E-05 57.2 7.8 89 261-350 20-119 (682)
130 PRK12300 leuS leucyl-tRNA synt 90.8 0.35 7.6E-06 60.8 6.0 80 287-368 1-128 (897)
131 PF09424 YqeY: Yqey-like prote 90.3 1 2.3E-05 44.4 7.6 84 75-178 58-142 (143)
132 PRK06039 ileS isoleucyl-tRNA s 89.7 0.52 1.1E-05 59.8 6.3 65 498-578 580-645 (975)
133 PLN02959 aminoacyl-tRNA ligase 89.5 1 2.2E-05 57.7 8.7 61 497-573 706-766 (1084)
134 TIGR00392 ileS isoleucyl-tRNA 89.3 0.63 1.4E-05 58.2 6.6 63 499-578 600-663 (861)
135 PRK05729 valS valyl-tRNA synth 88.7 1 2.2E-05 56.5 7.8 67 496-579 506-573 (874)
136 PHA01735 hypothetical protein 88.2 0.88 1.9E-05 39.2 4.6 55 76-131 19-75 (76)
137 COG0162 TyrS Tyrosyl-tRNA synt 88.1 8.7 0.00019 44.1 14.0 90 259-351 19-125 (401)
138 TIGR00234 tyrS tyrosyl-tRNA sy 86.8 3 6.6E-05 47.4 9.4 86 261-351 20-124 (377)
139 PRK14900 valS valyl-tRNA synth 86.3 1.5 3.4E-05 56.0 7.5 65 497-578 525-590 (1052)
140 PLN02843 isoleucyl-tRNA synthe 85.1 2.3 5E-05 54.1 8.1 60 495-570 596-664 (974)
141 COG0060 IleS Isoleucyl-tRNA sy 84.4 2 4.3E-05 53.8 7.0 95 275-369 52-184 (933)
142 COG0525 ValS Valyl-tRNA synthe 82.9 3.3 7.1E-05 51.5 7.8 66 489-570 502-570 (877)
143 PRK05743 ileS isoleucyl-tRNA s 82.2 2.8 6.1E-05 52.9 7.2 56 499-571 581-637 (912)
144 PRK13804 ileS isoleucyl-tRNA s 81.4 3.2 6.9E-05 52.8 7.3 59 496-571 616-675 (961)
145 PF00133 tRNA-synt_1: tRNA syn 81.0 3.5 7.5E-05 49.7 7.1 75 466-556 514-592 (601)
146 PLN02882 aminoacyl-tRNA ligase 80.1 2.9 6.3E-05 54.1 6.4 68 491-574 594-664 (1159)
147 KOG2713 Mitochondrial tryptoph 78.3 4.1 8.8E-05 44.5 5.8 69 281-349 20-99 (347)
148 PTZ00427 isoleucine-tRNA ligas 77.8 5.2 0.00011 52.0 7.6 62 500-577 710-773 (1205)
149 PRK00390 leuS leucyl-tRNA synt 74.6 7.1 0.00015 48.8 7.4 48 509-572 570-617 (805)
150 COG0495 LeuS Leucyl-tRNA synth 72.2 3 6.4E-05 51.8 3.3 115 430-560 482-614 (814)
151 KOG2438 Glutamyl-tRNA amidotra 68.7 1.4E+02 0.0031 34.8 15.1 162 15-179 327-503 (505)
152 PLN02381 valyl-tRNA synthetase 67.5 14 0.00031 47.5 8.0 54 283-339 378-443 (1066)
153 TIGR00396 leuS_bact leucyl-tRN 67.4 9.2 0.0002 48.0 6.2 48 509-572 604-651 (842)
154 PTZ00419 valyl-tRNA synthetase 66.2 9.6 0.00021 48.8 6.1 54 283-339 312-376 (995)
155 PF00749 tRNA-synt_1c: tRNA sy 64.4 0.74 1.6E-05 51.0 -3.7 36 525-560 259-294 (314)
156 KOG0437 Leucyl-tRNA synthetase 61.2 14 0.00031 45.0 5.8 70 269-341 40-116 (1080)
157 KOG0433 Isoleucyl-tRNA synthet 59.1 19 0.00042 44.0 6.4 107 261-370 46-189 (937)
158 PLN02563 aminoacyl-tRNA ligase 52.6 17 0.00038 46.3 5.0 56 506-578 720-775 (963)
159 KOG2145 Cytoplasmic tryptophan 44.6 24 0.00053 38.8 3.9 101 247-357 66-180 (397)
160 COG0060 IleS Isoleucyl-tRNA sy 37.4 16 0.00035 46.1 1.4 55 503-574 596-650 (933)
161 KOG0437 Leucyl-tRNA synthetase 34.6 8.9 0.00019 46.7 -1.4 76 467-559 664-744 (1080)
162 COG0177 Nth Predicted EndoIII- 32.7 1.4E+02 0.003 31.6 7.2 28 4-31 64-91 (211)
163 KOG0434 Isoleucyl-tRNA synthet 32.2 6.8E+02 0.015 31.3 13.2 107 264-370 27-175 (1070)
164 COG1610 Uncharacterized conser 29.6 5.1E+02 0.011 26.0 9.9 85 74-178 61-146 (148)
165 PF09682 Holin_LLH: Phage holi 28.7 88 0.0019 29.3 4.5 40 88-139 65-104 (108)
166 PF09312 SurA_N: SurA N-termin 27.8 1.2E+02 0.0027 28.5 5.4 60 81-140 6-84 (118)
167 PLN02207 UDP-glycosyltransfera 27.2 94 0.002 36.6 5.3 73 108-187 383-468 (468)
168 cd02168 NMNAT_Nudix Nicotinami 26.1 1.3E+02 0.0029 30.7 5.6 58 274-340 3-66 (181)
169 PRK13793 nicotinamide-nucleoti 23.9 51 0.0011 34.4 2.1 38 273-319 7-44 (196)
170 PF10440 WIYLD: Ubiquitin-bind 23.6 60 0.0013 28.1 2.1 29 4-32 6-34 (65)
171 COG1056 NadR Nicotinamide mono 22.7 53 0.0011 33.6 1.9 59 273-340 6-70 (172)
172 COG3372 Predicted nuclease of 22.7 3.1E+02 0.0068 31.6 8.1 109 9-130 29-148 (396)
173 PF07750 GcrA: GcrA cell cycle 22.0 76 0.0017 32.1 2.9 34 525-561 1-35 (162)
174 PRK11511 DNA-binding transcrip 21.9 3E+02 0.0065 26.1 6.9 45 89-137 7-51 (127)
175 PF01320 Colicin_Pyocin: Colic 21.7 1.8E+02 0.0039 26.5 4.9 62 77-139 17-78 (85)
176 PTZ00183 centrin; Provisional 21.5 6.6E+02 0.014 23.6 9.3 47 89-135 88-135 (158)
177 COG3118 Thioredoxin domain-con 21.0 2.7E+02 0.0059 31.1 7.0 86 93-189 206-291 (304)
178 PRK13503 transcriptional activ 20.3 5.8E+02 0.012 26.9 9.4 45 89-137 169-213 (278)
No 1
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-220 Score=1793.79 Aligned_cols=755 Identities=57% Similarity=0.953 Sum_probs=716.5
Q ss_pred CChhHHHHHHHhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCCCCcCchhHHHHHHhcCC
Q 003764 7 GDKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHRPTLLLYIVSSK 86 (797)
Q Consensus 7 ~~~~~~~~~f~~iGL~e~kaket~KN~kls~~L~~ii~~a~~~~~~dk~~g~ll~~lat~~~~~~~~~~~~l~~~I~~g~ 86 (797)
|+|++++++|.+|||||+||+||+||++|+++|..+|.++++.++||++.|+|||+|||++++|..+|+++|++||++|+
T Consensus 1 ~~~~dl~~~f~~lGlse~k~~etlKn~kvs~~l~~~i~~a~~~~~~~~~~g~Lly~lAt~~~~q~~~~~~llv~yI~~~~ 80 (764)
T KOG1148|consen 1 MAMEDLIALFTSLGLSEKKVKETLKNKKVSANLEKIIKEADVSSGCDRTTGNLLYTLATKLKPQKLAHLPLLVSYIVNGK 80 (764)
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHhHHHHHHHHHHHHHhcccccccccccchhHHHHHhhcCccccccchHHHHHHHhcc
Confidence 68999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccccchhhhHHHHHhhCCCC
Q 003764 87 IKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWA 166 (797)
Q Consensus 87 iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~k~~~~~~ry~~n~g~ll~~vr~~LkWA 166 (797)
|||++||+||++|++++ +++..+|+++|||||+||+|||+++|.+||++|++.|+++||+||.| |++.||+.||||
T Consensus 81 ikt~~ql~aa~~Y~~~~---~~~~~~fe~ecgvgvvvtpeqie~~V~~~i~~~k~~il~eRy~~~~g-l~~~~R~~LkwA 156 (764)
T KOG1148|consen 81 IKTELQLDAALEYVKSH---TLDKKDFEKECGVGVVVTPEQIEEAVRKYIAENKEKILEERYHFNKG-LFGDVRKELKWA 156 (764)
T ss_pred cCchHHHHHHHHHHhcc---ccchhhhhhhcCccEEECHHHHHHHHHHHHHHhHHHHHHHHHhcchh-hHHHHHhhcCCC
Confidence 99999999999999984 58889999999999999999999999999999999999999999999 999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCchhhhhhhhhhhhhhhccCCCcchhhcc-----ccCCCCCCCCccccCCCCCCCCCCCCc
Q 003764 167 DPKIVKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDKK-----FANDAPVQLPEEDLFPISNFPPPEENY 241 (797)
Q Consensus 167 d~k~vK~~vd~~~~~llgpk~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~p~~~~ 241 (797)
|++.||++||.++++||||||++|++++.|++++ +.++++.+.++. +++...++++|+|+. +||+||||.
T Consensus 157 D~~~vk~~iD~~~l~LlGpkte~dl~~~~k~~k~--~~~k~~~~~~~~~~~~e~~s~~~~~~~e~~~~---~~hk~gent 231 (764)
T KOG1148|consen 157 DPKSVKKEIDKEVLELLGPKTEADLEKKKKKKKA--EGEKKKTVSAKKAKNQEAASDKAPQIEELFLT---KFHKPGENT 231 (764)
T ss_pred CHHHHHHHHhhHHHHhcCccchhhcccccccccc--cccccccccCCCCCchhhhcccccchhhhhhh---hcccCCCCc
Confidence 9999999999999999999999999987665422 222222222111 122345788999999 999999996
Q ss_pred ccccccccCCCccceecCcHHHHHHhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhc
Q 003764 242 KVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAE 321 (797)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re 321 (797)
| +|+++|++||+.|||+|+|||||+|||+||||||+|+.+||+||+.+||.|+||||||||++|
T Consensus 232 ~----------------~t~ellk~HL~~TGGkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkE 295 (764)
T KOG1148|consen 232 Q----------------HTEELLKEHLERTGGKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKE 295 (764)
T ss_pred c----------------chHHHHHHHHHhhCCeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchh
Confidence 6 569999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCCCCcccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhc-cCCCCCCCCCChHHHhHHH
Q 003764 322 KKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE-KKMNSPWRDRPIAESLKLF 400 (797)
Q Consensus 322 ~~e~~~~I~e~L~wLGl~pd~~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~-~~~~~~~R~~s~ee~l~~f 400 (797)
.++|+++|.++++|||++|++++|+||||+++|++|.+||++|+||+|||+.+||++.|+ ...+|+||+|++||||++|
T Consensus 296 ee~yf~sI~e~V~WLG~~P~kvTysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~~~~spwRdRPieEsL~lF 375 (764)
T KOG1148|consen 296 EEEYFESIKEMVAWLGFEPYKVTYSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERRGFNERLSPWRDRPIEESLRLF 375 (764)
T ss_pred hHHHHHHHHHHHHHhCCCceeeecchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhcCCCCCCCccccCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987 3347999999999999999
Q ss_pred HHhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccch
Q 003764 401 EDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRR 480 (797)
Q Consensus 401 e~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t 480 (797)
++|++|++++|+++||||+|++++|++|+|+|+||+.+.||||+|++||||||||||||++||+++|||++|+.||..++
T Consensus 376 ~~Mr~Gk~~eGeAtLRmK~dl~~~~p~m~DlvayRik~~pHpRtg~kwcIYPTYDythCl~DSlEnITHSlCT~EF~~rR 455 (764)
T KOG1148|consen 376 EDMRDGKYEEGEATLRMKQDLESGNPQMWDLVAYRIKNVPHPRTGDKWCIYPTYDYTHCLVDSLENITHSLCTKEFQTRR 455 (764)
T ss_pred HHHhcCCcCcChhheeeeeeccCCCccccccceeeeecCCCCCCCCceEEecccchhhhehhhhhhhhhHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCCCCceeeeeeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCC
Q 003764 481 ASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 560 (797)
Q Consensus 481 ~~q~~L~~aLg~~~P~~~~f~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~ 560 (797)
.+|+|||++|++|+|.||+|||||++|++||||++.++|++|+|+||||||++||.+|||||++|+||++||+.+|+|.+
T Consensus 456 ~SY~WLcnaL~iY~P~qwEYgRLNv~~tv~SKRKi~~Lv~~~~V~~wDDPRLfTL~alRRRG~ppeAIn~F~~~lGvT~a 535 (764)
T KOG1148|consen 456 SSYYWLCNALEIYCPVQWEYGRLNVTYTVVSKRKILKLVTEGYVRGWDDPRLFTLTALRRRGFPPEAINNFCASLGVTTA 535 (764)
T ss_pred hhHHHHHhhhhcccchhhhhceeeeeeeeeehHHHHHHhhhcccccCCCccchhhhhHHhcCCCHHHHHHHHHHhCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccHhhHHHHHHHhhhccCCceeeEeccceEEEEcCCCCceeeeccccCCCCCCCCCCceeEecccceEEEecCcccc
Q 003764 561 DSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRM 640 (797)
Q Consensus 561 ~~~~~~~~Le~~ir~~~~~~~~R~~av~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyie~~D~~~ 640 (797)
++++++.+||+++|.+++.++||.|+|++|+||+|+|+++++.+.+++|++|. +|.+|+|+|||++.||||++||++
T Consensus 536 ~~~i~v~~lE~~VRd~Ln~tapR~M~VleplkVti~N~~~~~~~~i~iPd~P~---dp~~g~~~Vpft~vIYIErSDFke 612 (764)
T KOG1148|consen 536 QTTIDVARLEAAVRDYLNDTAPRLMFVLEPLKVTIENLSDDYPESIEIPDFPG---DPTSGFHKVPFTRVIYIERSDFKE 612 (764)
T ss_pred eceecHHHHHHHHHHHHhccCcceEEeecceEEEEecCCcchhhhccCCCCCC---CCccccccccccceEEEEcccccc
Confidence 99999999999999999999999999999999999999999989999999998 799999999999999999999999
Q ss_pred cCCccccCcCCCCEEEEeeee-eEEEeEeeecCCCCCEEEEEEEEcC-CCCCCCCeeEEeccCCCCCCCCeeEEEEeccc
Q 003764 641 KDSKDYYGLAPGKSVLLRYAF-PIKCTEVILSDDKETILHIRAEYDP-SKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEK 718 (797)
Q Consensus 641 ~~~~~~~~l~~g~~v~l~~~~-~i~~~~~~~~~~~g~v~e~~~~~~~-~~~~k~k~~I~Wv~~~~~~~~~~~~e~r~y~~ 718 (797)
+++|+|+||+|||+|+|+|.+ +|.+..+. +|++|.|+||+++||+ +.++|||++|||||+ +|+.||+|+|++
T Consensus 613 e~dK~f~RLtpgQpVGLr~~~~vi~~~~vv-kD~~g~v~ei~v~yd~~s~~~KPK~fIhWVse-----~Pv~vEvRlye~ 686 (764)
T KOG1148|consen 613 EDDKDFFRLTPGQPVGLRYAGYVIRVVKVV-KDDEGTVIEIHVEYDPASKKKKPKAFIHWVSE-----SPVKVEVRLYEQ 686 (764)
T ss_pred cCCcchhccCCCCcceeEeecceEEEEEEe-eCCCCceEEEEEEecccccccCCceeEEeccC-----CCeEeehhHHHH
Confidence 999999999999999999885 45555555 9999999999999998 566899999999996 499999999999
Q ss_pred cCCCCCCCCc-cCccccCCCCCceeeceeEeccccccCCCCCeEEEEEeeeEEEecCCCCCceeEeeecCCCCCCCCC
Q 003764 719 LFNSENPAEL-DDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPKG 795 (797)
Q Consensus 719 Lf~~~~p~~~-~~~~~~~n~~S~~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~v~n~~v~lk~~~~k~ 795 (797)
||+++||++. +.||++|||+|+.|+.+|++|..+...+++|+|||||+||||||+||+.++|||||||+|||++||+
T Consensus 687 LFks~NP~d~~e~fLsDiNp~S~~V~~~a~~D~~~~~a~v~DrFQfeRiGYF~VDkDSt~~kLVfNRtV~LKd~~gk~ 764 (764)
T KOG1148|consen 687 LFKSENPADLNEVFLSDINPDSLVVVKGALADKSISDAKVYDRFQFERIGYFCVDKDSTPGKLVFNRTVTLKDDSGKK 764 (764)
T ss_pred HhccCCccchhHHHHHhcCccchhhhhhhhhhhhhcccchhhhHhhhhcceeEecCCCCCceEEEEeEEEeccCCCCC
Confidence 9999999986 6799999999999999999999999999999999999999999999999999999999999998874
No 2
>PLN02859 glutamine-tRNA ligase
Probab=100.00 E-value=6.5e-217 Score=1861.25 Aligned_cols=785 Identities=83% Similarity=1.313 Sum_probs=750.9
Q ss_pred CChhHHHHHHHhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCCCCcCchhHHHHHHhcCC
Q 003764 7 GDKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHRPTLLLYIVSSK 86 (797)
Q Consensus 7 ~~~~~~~~~f~~iGL~e~kaket~KN~kls~~L~~ii~~a~~~~~~dk~~g~ll~~lat~~~~~~~~~~~~l~~~I~~g~ 86 (797)
..+++++++|++|||+|+||+||+||++|+++|..+|++|++..+||+++|+|||+|||+++++..+||++|++||++|+
T Consensus 3 ~~~~~~~~~f~~IGL~e~kAketlKN~klt~~L~~iI~ea~~~~~~dk~~g~LLy~LAtk~~~~~~~~r~~lv~~I~~gk 82 (788)
T PLN02859 3 ANSEKPLELFLKIGLDERTARNAIANNKVTSNLTAVIHEAGVTNGCDKTVGNLLYTVATKYPANALVHRPTLLSYIVSSK 82 (788)
T ss_pred CccHHHHHHHHHcCCChHHHHHHHhCHHHHHHHHHHHHhcCCccCCChHHHHHHHHHHHhcCCccchhHHHHHHHHHhCC
Confidence 45678999999999999999999999999999999999999977799999999999999999888999999999999999
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccccchhhhHHHHHhhCCCC
Q 003764 87 IKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWA 166 (797)
Q Consensus 87 iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~k~~~~~~ry~~n~g~ll~~vr~~LkWA 166 (797)
|||++||+||++|+++++..++|.++|+++|||||+||+|||+++|++||++|+++|+++||++|+|.||++||+.||||
T Consensus 83 IkT~~Ql~AA~kYl~~~~~~~~d~~~Fek~CGVGV~VT~EqI~~~V~~~i~~~k~~il~~RY~~n~g~ll~~~r~~Lkwa 162 (788)
T PLN02859 83 IKTPAQLEAAFSFFSSTGPESFDLNKFEEACGVGVVVSPEDIEAAVNEVFEENKEKILEQRYRTNVGDLLGQVRKRLPWA 162 (788)
T ss_pred CCCHHHHHHHHHHHHhCCCCccCHHHHHHhCCCCEEECHHHHHHHHHHHHHhhHHHHHHhcccccHHHHHHHHHhhCCCC
Confidence 99999999999999999877999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCchhhhhhhhhhhhhhhccCCCcchhhccccCCCCCCCCccccCCCCCCCCCCCCcccccc
Q 003764 167 DPKIVKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNFPPPEENYKVHTE 246 (797)
Q Consensus 167 d~k~vK~~vd~~~~~llgpk~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 246 (797)
|++.||++||+++++||||||++|.+|++|+++ +++++++++ ......++|++|||++++.||+||||++++..
T Consensus 163 d~~~~k~~id~~~~~llg~k~~~d~~~~~k~~k-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~en~~~~~~ 236 (788)
T PLN02859 163 DPKIVKKLIDKKLYELLGEKTAADNEKPVKKKK-----EKPAKVEEK-KVAVAAAPPSEEELNPYSIFPQPEENFKVHTE 236 (788)
T ss_pred CHHHHHHHHHHHHHHhcCCcchhhhcccccccc-----ccccccccc-cccccccccchhhccccccCCCccccccccce
Confidence 999999999999999999999999886544421 111111111 11234589999999999999999999999999
Q ss_pred cccCCCccceecCcHHHHHHhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHH
Q 003764 247 IPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYI 326 (797)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~ 326 (797)
+++++|+++..+||+++|++||++|+|+|+|||||||||||||||||+|++||+|||++||+|+||||||||+|+.++|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~hl~~t~g~V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDTdp~r~~~e~~ 316 (788)
T PLN02859 237 VFFSDGSVLRPSNTKEILEKHLKATGGKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEYI 316 (788)
T ss_pred eeccccccccccCcHHHHHHHHhhcCCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCcccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcC
Q 003764 327 DHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNG 406 (797)
Q Consensus 327 ~~I~e~L~wLGl~pd~~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G 406 (797)
++|+++|+|||++|++++|||+||+.+|++|.+||++|+||+|+||+++|++.|..+.+|+||+++++|+|.+|++|++|
T Consensus 317 ~~I~edL~WLG~~~d~~~~qSd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~~~sp~Rd~s~eenl~lfe~m~~g 396 (788)
T PLN02859 317 DHIEEIVEWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRG 396 (788)
T ss_pred HHHHHHHHHcCCCCCCcccccHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhhccCCCCCCChHHhhhhhHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred cccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHH
Q 003764 407 RIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWL 486 (797)
Q Consensus 407 ~~~~g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L 486 (797)
.+.+|++|||||+||.++|++|+|+|+||+.+.+||++|++|++|||||||||||||+|||||||||.||++||++|.||
T Consensus 397 ~~~~G~~vlR~Kid~~~~n~~~rD~V~~RI~~~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl 476 (788)
T PLN02859 397 LIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWL 476 (788)
T ss_pred hhccCCeEEEEeccCCCCCceeeeceeEEEeccCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCceeeeeeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCc-ccc
Q 003764 487 LHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS-LIR 565 (797)
Q Consensus 487 ~~aLg~~~P~~~~f~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~-~~~ 565 (797)
|++|||+.|.+|||+|||++|++||||++.++|++|+|+||||||++||++||||||+|+||++||+.+|||.+++ .++
T Consensus 477 ~~aLg~~~P~~~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~~~e~i~ 556 (788)
T PLN02859 477 LDSLGLYQPYVWEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIR 556 (788)
T ss_pred HHHcCCCCCcEEeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCceec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988 899
Q ss_pred HhhHHHHHHHhhhccCCceeeEeccceEEEEcCCCCceeeeccccCCCCCCCCCCceeEecccceEEEecCcccccCCcc
Q 003764 566 LDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKD 645 (797)
Q Consensus 566 ~~~Le~~ir~~~~~~~~R~~av~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyie~~D~~~~~~~~ 645 (797)
++.|++++++.+++.+||+|+|+||+||+|+|+|++..+.+.+|.||.+|.++++|+|.|+|++.||||++||++.++++
T Consensus 557 ~~~Le~~~r~~l~~~a~R~maV~dp~kv~i~n~~~~~~~~~~~~~~P~~p~~~~~g~r~v~f~~~iyIe~~D~~~~~~~~ 636 (788)
T PLN02859 557 MDRLEHHIREELNKTAPRTMVVLHPLKVVITNLESGEVIELDAKRWPDAQNDDPSAFYKVPFSRVVYIERSDFRLKDSKD 636 (788)
T ss_pred HHHHHhhCHHhhCCcCcchheecCCeEEEEecCCCCceeecccccCCCCCCCccCceEEEEECCeEEEEhHHhhcccccc
Confidence 99999999999999999999999999999999999888889999999988899999999999999999999999999999
Q ss_pred ccCcCCCCEEEEeeeeeEEEeEeeecCCCCCEEEEEEEEcCCCCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCC
Q 003764 646 YYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENP 725 (797)
Q Consensus 646 ~~~l~~g~~v~l~~~~~i~~~~~~~~~~~g~v~e~~~~~~~~~~~k~k~~I~Wv~~~~~~~~~~~~e~r~y~~Lf~~~~p 725 (797)
|+||+||++|+|+|+++|+|++++.+|++|+|++|+|+|+++...|||++|||||+++++.++++||+|+|++||++++|
T Consensus 637 ~~rL~pg~~V~L~~~~~i~~~~~~~~d~~g~v~el~~~~d~~~~~K~k~~ihWvs~~~~~~~~~~~e~r~yd~Lf~~~~p 716 (788)
T PLN02859 637 YYGLAPGKSVLLRYAFPIKCTDVVLADDNETVVEIRAEYDPEKKTKPKGVLHWVAEPSPGVEPLKVEVRLFDKLFLSENP 716 (788)
T ss_pred ceecCCCCEEEEcceeEEEEEEEEEeCCCCCEEEEEEEEccCCCCccCceEEeeecCCCCCCceeEEEEeehhhcCCCCC
Confidence 99999999999999999999998767889999999999999877899999999998655667899999999999999999
Q ss_pred CCccCccccCCCCCceeeceeEeccccccCCCCCeEEEEEeeeEEEecCCCCCceeEeeecCCCCCCCCCCC
Q 003764 726 AELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPKGGK 797 (797)
Q Consensus 726 ~~~~~~~~~~n~~S~~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~v~n~~v~lk~~~~k~~~ 797 (797)
++.++|+++|||+|+.++.+|++|+++.++++|++|||||.||||||+||+++++||||||+||++++|.+|
T Consensus 717 ~~~~~~~~~iNp~S~~v~~~a~~e~~~~~~~~~~~~QfeR~GYF~~D~ds~~~~~vfNr~v~Lkd~~~k~~~ 788 (788)
T PLN02859 717 AELEDWLEDLNPQSKEVISGAYAVPSLKDAKVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSYGKGGK 788 (788)
T ss_pred cccccHHHhCCCCccEEEeceEEcHhHhhCCCCCeEEEEeeeEEeccCCCCCCCeEEEeeeeccccccccCC
Confidence 988899999999999999889999999999999999999999999999999999999999999999999765
No 3
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.2e-150 Score=1269.44 Aligned_cols=543 Identities=48% Similarity=0.867 Sum_probs=519.4
Q ss_pred CCCCCCCCCcccccccccCCCccceecCcHHHHHHhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEE
Q 003764 232 SNFPPPEENYKVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYL 311 (797)
Q Consensus 232 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iL 311 (797)
+.||..+++... +|+ .|+|+++++|++.++|+|+|||||||||||||||||+|++||++||++||+|+|
T Consensus 20 ~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~gkv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iL 88 (574)
T PTZ00437 20 RDLSLLQTGRPV-------PGC----RNTPELLEKHEAVTGGKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYL 88 (574)
T ss_pred cchhhhcccCCC-------ccc----CCCHHHHHHHhcccCCcEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEE
Confidence 356666665443 233 689999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCchhchHHHHHHHHHHHHHcCCCCCcccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCC
Q 003764 312 RYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDR 391 (797)
Q Consensus 312 RidDtDp~re~~e~~~~I~e~L~wLGl~pd~~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~ 391 (797)
|||||||+|+.++|+++|+++|+|||+.||++++||+||+.||++|++||++|+||+|+||+++|++.|+.+.+|+||++
T Consensus 89 RiEDTDp~r~~~e~~~~I~~dL~wLGi~~D~~~~qS~y~~~~ye~A~~Li~~G~AY~C~cs~eei~~~R~~~~~~~~R~~ 168 (574)
T PTZ00437 89 RYDDTNPETEEQVYIDAIMEMVKWMGWKPDWVTFSSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQQREQREDSPWRNR 168 (574)
T ss_pred EECCCCccccChHHHHHHHHHHHHcCCCCCCCCcCchhHHHHHHHHHHHHHcCCEEEcCCCHHHHHHHhhcccCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred ChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEe
Q 003764 392 PIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSL 471 (797)
Q Consensus 392 s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvl 471 (797)
+++|||++|++|++|.+.+|++|||+|+||.++|++|+|+|+||+.+.+||++||+|+||||||||||||||+|||||||
T Consensus 169 ~~eenL~lfe~M~~g~~~~g~~vlR~K~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~~iyPtYdFa~~vdD~l~gITHvl 248 (574)
T PTZ00437 169 SVEENLLLFEHMRQGRYAEGEATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKWCIYPSYDFTHCLIDSLEDIDYSL 248 (574)
T ss_pred CHHHHHHHHHHHhhcccccCCeEEEEeCcCCCCCCccccCeeeeeccCCcCCCCCceEEEccCcccceeechhcCCCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccchhHHHHHHHHhCCCCCceeeeeeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHH
Q 003764 472 CTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAF 551 (797)
Q Consensus 472 RG~E~~~~t~~q~~L~~aLg~~~P~~~~f~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~f 551 (797)
||.||.++++.|.||+++|+|+.|.+|+|++||++|++||||++.++|++|+|+||||||++||++||||||+|+||++|
T Consensus 249 ct~Ef~~r~~~y~wl~~~l~l~~p~~~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f 328 (574)
T PTZ00437 249 CTLEFETRRESYFWLLEELNLWRPHVWEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRF 328 (574)
T ss_pred eechhhcccHHHHHHHHHhCCcccceEeeeeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCccccHhhHHHHHHHhhhccCCceeeEeccceEEEEcCCCCceeeeccccCCCCCCCCCCceeEecccceE
Q 003764 552 VQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVV 631 (797)
Q Consensus 552 l~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~i 631 (797)
|..+|||+++++++|+.||+++|+.+++.+||+|+|+||++|+|+|++.. ..+++|+||+ +|++|+|.++|++.|
T Consensus 329 ~~~~G~sk~~~~i~~~~Le~~nR~~ld~~a~R~~~V~dPv~v~I~n~~~~--~~~~~p~hP~---~~~~G~R~i~~~~~i 403 (574)
T PTZ00437 329 CELVGITRSMNVIQISMLENTLREDLDERCERRLMVIDPIKVVVDNWKGE--REFECPNHPR---KPELGSRKVMFTDTF 403 (574)
T ss_pred HHHhCCCccceEeeHHHHHHHHHHHhcccCccceEEccceEEEEecCCCc--eEEeccCCCC---CCcCceEEEEEcCeE
Confidence 99999999999999999999999999999999999999999999998754 5678899888 799999999999999
Q ss_pred EEecCccc-ccCCccccCcCCCC-EEEEeeeeeEEEeEeeecCCCCCEEEEEEEEcCCCCCCCCeeEEeccCCCCCCCCe
Q 003764 632 YIEHSDFR-MKDSKDYYGLAPGK-SVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPL 709 (797)
Q Consensus 632 yie~~D~~-~~~~~~~~~l~~g~-~v~l~~~~~i~~~~~~~~~~~g~v~e~~~~~~~~~~~k~k~~I~Wv~~~~~~~~~~ 709 (797)
|||++||+ +.++++|+||+||+ .|+|++++||+|+++. +|++|+|++++|.++++..+|+|++|||||+ .+++
T Consensus 404 yIe~~D~~~~~~~~~f~rL~~g~~~vrL~~~~~i~~~~~~-~d~~g~v~~~~~~~d~~~~~k~k~~IhWvs~----~~~v 478 (574)
T PTZ00437 404 YVDRSDFRTEDNNSKFYGLAPGPRVVGLKYSGNVVCKGFE-VDAAGQPSVIHVDIDFERKDKPKTNISWVSA----TACT 478 (574)
T ss_pred EEEHHHhhcccccccceecCCCCeEEEeccEEEEEEEEEE-ECCCCCEEEEEEEecccccccCCCeEEEeec----CCce
Confidence 99999998 66789999999997 8999999999999998 8889999999999998877889999999997 4689
Q ss_pred eEEEEeccccCCCCCCCCccCccccCCCCCceeeceeEeccccccCCCCCeEEEEEeeeEEEecCCCCCceeEeeecCCC
Q 003764 710 RVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLK 789 (797)
Q Consensus 710 ~~e~r~y~~Lf~~~~p~~~~~~~~~~n~~S~~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~v~n~~v~lk 789 (797)
+|+||+|++||++++|+..++|+++|||+|+.+. .||+|+++.++++|++|||||+|||+||+||+++++||||||+||
T Consensus 479 ~~evr~Yd~Lf~~~~p~~~~~~~~~iNp~s~~~~-~g~~E~~~~~~~~~~~~QfeR~Gyf~vD~ds~~~~~vfNr~v~Lk 557 (574)
T PTZ00437 479 PVEVRLYNALLKDDRAAIDPEFLKFIDEDSEVVS-HGYAEKGIENAKHFESVQAERFGYFVVDPDTRPDHLVMNRVLGLR 557 (574)
T ss_pred eEEEEeccccccCCCCCccccHhhhCCCCceEEE-EEEEchhhhhCCCCCeEEEEEeEEEEeCCCCCCCCEEEEeeeEcc
Confidence 9999999999999999988899999999999987 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 003764 790 DSFPKGG 796 (797)
Q Consensus 790 ~~~~k~~ 796 (797)
++++|.+
T Consensus 558 d~~~K~~ 564 (574)
T PTZ00437 558 EDKEKAT 564 (574)
T ss_pred ccccccc
Confidence 9988753
No 4
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.3e-147 Score=1245.95 Aligned_cols=526 Identities=54% Similarity=0.927 Sum_probs=502.4
Q ss_pred HHHHHHhhhhc-CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCC
Q 003764 261 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 339 (797)
Q Consensus 261 ~~~~~~~~~~~-~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~ 339 (797)
.+++.+.++.. .|+|+|||||||||||||||||+|++||++||++||+|+||||||||+|+.++|+++|+++|+|||+.
T Consensus 15 ~~~~~~dl~~~~~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLGi~ 94 (554)
T PRK05347 15 RQIIDEDLASGKHTRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKEDVRWLGFD 94 (554)
T ss_pred HHHHHhHHhcCCcCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCcCChHHHHHHHHHHHHcCCC
Confidence 44666666653 46899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-cccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhcc----CCCCCCCCCChHHHhHHHHHhhcCcccCCceE
Q 003764 340 PF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREK----KMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 414 (797)
Q Consensus 340 pd-~~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~----~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~ 414 (797)
|| +++|||+||+.||++|++||++|+||+|+||+++|++.|+. +++|+||++|++|++++|++|++|.+.+|+++
T Consensus 95 ~d~~~~~qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~~R~~~~~~g~~~~~R~~s~eenl~~~~~m~~G~~~~g~~v 174 (554)
T PRK05347 95 WSGELRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKNSPYRDRSVEENLDLFERMRAGEFPEGSAV 174 (554)
T ss_pred CCCCceeeecCHHHHHHHHHHHHHcCCEeeCCCCHHHHHHHhhhhhhcCCCCCccCCCHHHHHHHHHHHHCCCCCCCcEE
Confidence 95 78999999999999999999999999999999999999874 78999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCC-C
Q 003764 415 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-Y 493 (797)
Q Consensus 415 lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~-~ 493 (797)
||+|+|+.++|++|+|+|+||+.+.+||++|++|++|||||||||||||+|||||||||.||++||++|.||+++||+ +
T Consensus 175 lR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~~iyPtYdfA~~vdD~l~gITHvlRg~E~~~~t~~~~~i~~alg~~~ 254 (554)
T PRK05347 175 LRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKWCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDWVLDNLPIPP 254 (554)
T ss_pred EEEEeeccCCCCCCCCCEEEEecCCCCCccCCceeeecCcCccceeeccccCCceEEeccccccChHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985 5
Q ss_pred CCceeeeeeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHH
Q 003764 494 QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 573 (797)
Q Consensus 494 ~P~~~~f~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~i 573 (797)
.|.+|+|+|||++|+|||||++.++|++|.|+||||||++||++||||||+|+||++||+.+|||.++..++|+.||+++
T Consensus 255 ~P~~~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~n 334 (554)
T PRK05347 255 HPRQYEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLESCI 334 (554)
T ss_pred CCceEEEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCceeeEeccceEEEEcCCCCceeeeccccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCCC
Q 003764 574 REELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGK 653 (797)
Q Consensus 574 r~~~~~~~~R~~av~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyie~~D~~~~~~~~~~~l~~g~ 653 (797)
|+.+++.+||+|+|+||++|.|+|++++..+.+++|+||+ +|++|+|.++|+++||||++||++.++++|+||+||+
T Consensus 335 Rk~ld~~a~R~m~V~~pv~v~i~n~~~~~~~~~~~p~hP~---~~~~G~r~i~~~~~iyIe~~D~~~~~~~~~~rl~~g~ 411 (554)
T PRK05347 335 REDLNENAPRAMAVLDPLKLVITNYPEGQVEELEAPNHPE---DPEMGTREVPFSRELYIEREDFMEEPPKKYFRLVPGK 411 (554)
T ss_pred HHHhccCCCceEEEcCCeEEEEEeCCCCceEEEEecCCCC---CCcCceEEEEEcCeEEEEhHHhhccccccccccCCCC
Confidence 9999999999999999999999999887777789999888 7899999999999999999999999999999999999
Q ss_pred EEEEeeeeeEEEeEeeecCCCCCEEEEEEEEcCC-------CCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCC
Q 003764 654 SVLLRYAFPIKCTEVILSDDKETILHIRAEYDPS-------KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPA 726 (797)
Q Consensus 654 ~v~l~~~~~i~~~~~~~~~~~g~v~e~~~~~~~~-------~~~k~k~~I~Wv~~~~~~~~~~~~e~r~y~~Lf~~~~p~ 726 (797)
+|+|+++++|+|+++. +|++|.|++++|+|+++ ..+|++++|||||+ .++++|+||+|++||++++|+
T Consensus 412 ~vrL~~~~~i~~~~~~-kd~~g~v~~~~~~~~~~~~~g~~~~~kk~k~~IhWv~~----~~~v~~~v~~yd~Lf~~~~p~ 486 (554)
T PRK05347 412 EVRLRNAYVIKCEEVV-KDADGNITEIHCTYDPDTLSGNPADGRKVKGTIHWVSA----AHAVPAEVRLYDRLFTVPNPA 486 (554)
T ss_pred EEEecCEEEEEEEEEE-EcCCCCEEEEEEEEccccccCCCccCcccCCEEEeeec----CCCEeEEEEEeccccCCCCCC
Confidence 9999999999999998 88999999999999875 23688899999997 468999999999999999999
Q ss_pred CccCccccCCCCCceeeceeEeccccccCCCCCeEEEEEeeeEEEecCCCCCceeEeeecCCCCCCCCC
Q 003764 727 ELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPKG 795 (797)
Q Consensus 727 ~~~~~~~~~n~~S~~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~v~n~~v~lk~~~~k~ 795 (797)
+.++|+++|||+|+.+. .|++|+++.++++|++|||||+|||+||++++++++||||||+||++++|.
T Consensus 487 ~~~~~~~~iN~~s~~~~-~~~~E~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~v~n~~v~l~d~~~k~ 554 (554)
T PRK05347 487 AGKDFLDFLNPDSLVIK-QGFVEPSLADAKPEDRFQFEREGYFCADKDSTPGKLVFNRTVGLRDSWAKI 554 (554)
T ss_pred ccccHhHhcCCCceEEE-eEEEcHHHhhCCCCCEEEEEEeeEEEecCCCCCCCeEEEeeeecccccCCC
Confidence 88999999999999765 799999999999999999999999999999999999999999999998874
No 5
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=100.00 E-value=4.7e-143 Score=1256.68 Aligned_cols=528 Identities=46% Similarity=0.852 Sum_probs=505.8
Q ss_pred HHHHHHhhhh-cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCC
Q 003764 261 KEVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 339 (797)
Q Consensus 261 ~~~~~~~~~~-~~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~ 339 (797)
.+++++|++. +.|+|+|||||||||||||||||+|++||+|||++||+|+||||||||+|+.++|+++|+++|+|||++
T Consensus 17 ~~~~~~~l~~g~~~~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDTd~~r~~~e~~~~I~~dl~wLG~~ 96 (771)
T PRK14703 17 TEIIEEDLEAGRYPRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDDVRWLGFD 96 (771)
T ss_pred HHHHHHHHhcCCCCceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCcCChHHHHHHHHHHHHcCCC
Confidence 6789999998 788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc-ccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhc----cCCCCCCCCCChHHHhHHHHHhhcCcccCCceE
Q 003764 340 PFK-ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 414 (797)
Q Consensus 340 pd~-~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~----~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~ 414 (797)
||+ ++|||+||+.||++|++||++|+||+|+||+++|++.|+ .+++|+||++|++|++.+|++|+.|.+.+|++|
T Consensus 97 wd~~~~~qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~r~~~~~~g~~~~~R~~s~ee~l~~~~~m~~G~~~~g~~v 176 (771)
T PRK14703 97 WGEHLYYASDYFERMYAYAEQLIKMGLAYVDSVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFPDGAHV 176 (771)
T ss_pred CCCCceEeecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHHHHHhCCCCcCCCeE
Confidence 986 799999999999999999999999999999999999987 689999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCC-C
Q 003764 415 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-Y 493 (797)
Q Consensus 415 lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~-~ 493 (797)
||+|+||.++|++|+|+|+||+...+||++||+|++|||||||||||||+|||||||||.||++||+.|.||+++||+ .
T Consensus 177 lR~Kid~~~~n~~~rD~v~~R~~~~~H~~~Gd~~~i~PtYdfa~~vdD~l~gITHvlRg~E~~~~~~~~~~l~~~l~~~~ 256 (771)
T PRK14703 177 LRAKIDMSSPNMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDWVLDHLGPWP 256 (771)
T ss_pred EEEEeeccCCcccCCCCEEEEEcCCCCCCcCCCCCcCCCccccceeeccccCCcEEEecHhhhhccHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999964 3
Q ss_pred -CCceeeeeeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHH
Q 003764 494 -QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (797)
Q Consensus 494 -~P~~~~f~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 572 (797)
.|.+|+|+|||+.|++||||++.++|++|.|+||||||++||++||||||+|+||++||..+|||+++++++|+.||++
T Consensus 257 ~~P~~~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~~~~i~~~~L~~~ 336 (771)
T PRK14703 257 PRPRQYEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKTNSTVDIGVLEFA 336 (771)
T ss_pred CCcceeEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCccCceecHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCceeeEeccceEEEEcCCCCceeeeccccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCC
Q 003764 573 IREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPG 652 (797)
Q Consensus 573 ir~~~~~~~~R~~av~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyie~~D~~~~~~~~~~~l~~g 652 (797)
+|+.+++.+||+|+|+||++|+|+|++++....+.+|+||++ .|++|+|.|+|+++||||++||++.++++|+||+||
T Consensus 337 ~R~~ld~~a~R~~~V~~p~~v~i~n~~~~~~~~~~~p~hp~~--~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~g 414 (771)
T PRK14703 337 IRDDLNRRAPRVMAVLDPLKVVIENLPAGKVEELDLPYWPHD--VPKEGSRKVPFTRELYIERDDFSEDPPKGFKRLTPG 414 (771)
T ss_pred HHHHhccCCCceEEEcCCeEEEEEeCCCCceEEEeccCCCCC--CccCceEEEEEcCeEEEEhhHhhccccccccccCCC
Confidence 999999999999999999999999998877788899999982 289999999999999999999999999999999999
Q ss_pred CEEEEeeeeeEEEeEeeecCCCCCEEEEEEEEcCCC------CCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCC
Q 003764 653 KSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSK------KTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPA 726 (797)
Q Consensus 653 ~~v~l~~~~~i~~~~~~~~~~~g~v~e~~~~~~~~~------~~k~k~~I~Wv~~~~~~~~~~~~e~r~y~~Lf~~~~p~ 726 (797)
++|+|+++|+|+|+++. +|++|.|++++|+|+++. .+|++++|||||+ .++++|+||+|++||++++|+
T Consensus 415 ~~vrL~~~~~i~~~~~~-kd~~G~v~~~~~~~~~~~~~~~~~~~k~k~~ihWv~~----~~~v~~~vr~Yd~Lf~~~~p~ 489 (771)
T PRK14703 415 REVRLRGAYIIRCDEVV-RDADGAVTELRCTYDPESAKGEDTGRKAAGVIHWVSA----KHALPAEVRLYDRLFKVPQPE 489 (771)
T ss_pred CEEEecceEEEEEEEEE-EcCCCCEEEEEEEEeCCCcCCCccCCcCCcEEEEeec----CCCeeEEEEecccccCCCCCC
Confidence 99999999999999998 889999999999998763 3578899999997 468999999999999999998
Q ss_pred -CccCccccCCCCCceeeceeEeccccccCCCCCeEEEEEeeeEEEec-CCCCCceeEeeecCCCCCCCCCC
Q 003764 727 -ELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDK-DSTPEKLVFNRTVTLKDSFPKGG 796 (797)
Q Consensus 727 -~~~~~~~~~n~~S~~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~-~~~~~~~v~n~~v~lk~~~~k~~ 796 (797)
..++|+++|||+|+.+. .||+||++.++++|++|||||+|||+||+ ||+++++||||||+||++++|..
T Consensus 490 ~~~~~~~~~lN~~Sl~~~-~g~~e~~~~~~~~~~~~QfeR~Gyf~~D~~d~~~~~~vfNr~v~lkd~~~~~~ 560 (771)
T PRK14703 490 AADEDFLEFLNPDSLRVA-QGRVEPAVRDDPADTRYQFERQGYFWADPVDSRPDALVFNRIITLKDTWGARA 560 (771)
T ss_pred ccccchHhhcCCCCceeE-ccEEcHhHhhCCCCCEEEEEEeEEEEEccCCCCCCCeEEEeecccCccccccc
Confidence 45899999999999998 58999999999999999999999999996 78899999999999999998653
No 6
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=100.00 E-value=6e-143 Score=1210.49 Aligned_cols=508 Identities=51% Similarity=0.874 Sum_probs=487.5
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCC-cccCCchhHHHH
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPF-KITYTSDYFQEL 353 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd-~~~~qSd~~~~~ 353 (797)
|+|||||||||||||||||||++||++||++||+|+||||||||+|+.++|+++|+++|+|||+.|| .+++||+||+.|
T Consensus 1 V~tRFaPsPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLG~~~d~~~~~qS~~~~~~ 80 (522)
T TIGR00440 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVEWLGFKWEGKIRYSSDYFDEL 80 (522)
T ss_pred CeEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCcccCChHHHHHHHHHHHHcCCCCCCCceEccccHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999995 689999999999
Q ss_pred HHHHHHHHHcCccccCCCCHHHHHHHhc----cCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcC
Q 003764 354 YELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMY 429 (797)
Q Consensus 354 ye~a~~LI~~G~AY~C~cs~eel~~~r~----~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~ 429 (797)
|++|++||++|+||+|+||+++|++.|+ ++|+|+||+++++|++++|++|++|.+.+|++|||+|+|+.+++++|+
T Consensus 81 ~~~a~~Li~~G~AY~c~cs~eel~~~R~~~~~~g~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~vlR~Kid~~~~n~~~r 160 (522)
T TIGR00440 81 YRYAEELIKKGLAYVDELTPEEIREYRGTLTDPGKNSPYRDRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMR 160 (522)
T ss_pred HHHHHHHHHcCCEEeecCCHHHHHHhhhhcccCCCCCcccCCCHHHHHHHHHHHhcCcccCCCeEEEEeCcCCCCCceEe
Confidence 9999999999999999999999999985 689999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCC-CCceeeeeeccCCCc
Q 003764 430 DLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNVSNT 508 (797)
Q Consensus 430 D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~-~P~~~~f~~Ln~~g~ 508 (797)
|+|+||+.+.+|+++|++|++|||||||||||||+|||||||||.||++||+.|.||+++++++ .|.+|+|+|||++|+
T Consensus 161 D~V~~Ri~~~~h~~~gdk~~iyPtYdfa~~vdD~l~gITHviRg~E~~~nt~~Y~~~~~~l~~~~~P~~~~F~rln~~~~ 240 (522)
T TIGR00440 161 DPVAYRIKFAPHHQTGTKWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQYEFSRLNLEGT 240 (522)
T ss_pred eeeEEEEecCCCCCCCCCeeEEeCcCCceeehhccCCCceEeecHhhhhcHHHHHHHHHhcCccCCCceEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred eecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhhhccCCceeeEe
Q 003764 509 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVL 588 (797)
Q Consensus 509 kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~ 588 (797)
|||||++..+|++|+|+||||||++||++||||||+|+||++||+.+|||.+++.++++.|++++++|++++++|+|+|+
T Consensus 241 kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~~~r~f~~~~~~r~~av~ 320 (522)
T TIGR00440 241 VLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLESCIREDLNENAPRAMAVI 320 (522)
T ss_pred CcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHHHHHHhhhhcCccccccc
Confidence 99999999999999999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred ccceEEEEcCCCCceeeeccccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCCCEEEEeeeeeEEEeEe
Q 003764 589 NPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEV 668 (797)
Q Consensus 589 dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyie~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~ 668 (797)
||.||+|.|++... +..++|+||+ ++++|+|.++|++.||||++||++.++++|+||+||++|+|+++|+|+|+++
T Consensus 321 d~~kl~i~~~~~~~-~~~~~p~~p~---~~~~g~r~v~~~~~i~Ie~~D~~~~~~~~f~~l~~g~~vrL~~~~~i~~~~~ 396 (522)
T TIGR00440 321 DPVEVVIENLSDEY-ELATIPNHPN---TPEFGERQVPFTNEFYIDRADFREEANKQYKRLVLGKEVRLRNAYVIKAERV 396 (522)
T ss_pred ccceEEEecCCCCc-eEEeccCCCC---ChhHeeEEEEecceeEEEHHHhhccccccccccCCCCEEEeCCEEEEEEEEE
Confidence 99999999997653 3567888887 7899999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCEEEEEEEEcCC-------CCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCce
Q 003764 669 ILSDDKETILHIRAEYDPS-------KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKV 741 (797)
Q Consensus 669 ~~~~~~g~v~e~~~~~~~~-------~~~k~k~~I~Wv~~~~~~~~~~~~e~r~y~~Lf~~~~p~~~~~~~~~~n~~S~~ 741 (797)
. +|++|.|++++|+|+++ ..+|+|++|||||+ .+.++||+|+|++||++++|++.++|++++||+|+.
T Consensus 397 ~-~d~~G~v~~~~~~~~~~~~~~~~~~~kk~k~~IhWv~~----~~~~~~evr~yd~Lf~~~~p~~~d~~~~~~np~s~~ 471 (522)
T TIGR00440 397 E-KDAAGKITTIFCTYDNKTLGKEPADGRKVKGVIHWVSA----SSKYPTETRLYDRLFKVPNPGAPDDFLSVINPESLV 471 (522)
T ss_pred E-ecCCCCEEEEEEEEccccccCCccccccCCcEEEeeec----CCCeeEEEEecccccCCCCCCccccHhhhCCCCceE
Confidence 8 88899999999999874 23688899999997 467999999999999999999989999999999998
Q ss_pred eeceeEeccccccCCCCCeEEEEEeeeEEEe-cCCCCCceeEeeecCCCCCC
Q 003764 742 VIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSF 792 (797)
Q Consensus 742 ~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D-~~~~~~~~v~n~~v~lk~~~ 792 (797)
+. .|++|+++.++++|++|||||+|||||| .+|+++++||||||+||+++
T Consensus 472 ~~-~~~~E~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~~v~Nr~v~l~d~~ 522 (522)
T TIGR00440 472 IK-QGFMEHSLGDAVANKRFQFEREGYFCLDSKESTTEKVVFNRTVSLKDAT 522 (522)
T ss_pred EE-EEEEchhHhhCCCCCEEEEEEeEEEEEccCCCCCCCeEEEeeeecCCCC
Confidence 76 6999999999999999999999999999 47889999999999999975
No 7
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=100.00 E-value=5.3e-136 Score=1152.57 Aligned_cols=501 Identities=33% Similarity=0.530 Sum_probs=469.9
Q ss_pred hcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCcccCCchh
Q 003764 270 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDY 349 (797)
Q Consensus 270 ~~~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~~~~qSd~ 349 (797)
+++|+|+|||||||||||||||||||++||++||++||+|+||||||||+|+.++|+++|+++|+|||++||+++|||+|
T Consensus 7 a~~g~v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDTDp~R~~~e~~~~I~~dL~WLGl~wD~~~~qSdr 86 (523)
T PLN03233 7 AIAGQIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDLGKIEIKPDSVSFTSDY 86 (523)
T ss_pred CCCCeEEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCccchHHHHHHHHHHHHhCCCCCCCcccccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcC
Q 003764 350 FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMY 429 (797)
Q Consensus 350 ~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~ 429 (797)
|+.||++|++||++|+||+|+||+++|++.|+.+++|+||+++++|++++|++|++|.+.+|++++|+|+++.+++.+|+
T Consensus 87 ~~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~n~~~~ 166 (523)
T PLN03233 87 FEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLR 166 (523)
T ss_pred HHHHHHHHHHHHHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCCCCCCc
Confidence 99999999999999999999999999999998889999999999999999999999998889999999999999999999
Q ss_pred ccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCceeeeeeccCCCce
Q 003764 430 DLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTV 509 (797)
Q Consensus 430 D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~~f~~Ln~~g~k 509 (797)
|+|+||+...+||++|++|++|||||||||||||+|||||||||.||++||++|.||+++|||+.|.||||+|||+.|+|
T Consensus 167 D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg~~~P~~~~f~rln~~~~k 246 (523)
T PLN03233 167 DPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRIHAFARMNFMNTV 246 (523)
T ss_pred CCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhCCCCCeeeeeEEECCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhhhccCCceeeEe-
Q 003764 510 MSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVL- 588 (797)
Q Consensus 510 LSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~- 588 (797)
||||++.++|++|.|+||||||++||++||||||+|+||++||+.+|+|.++++++|+.||+++|+.+++.+||+|+|.
T Consensus 247 LSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nR~~ld~~a~R~m~V~~ 326 (523)
T PLN03233 247 LSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAENKKEIDKRAKRFMAIDK 326 (523)
T ss_pred ccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHHHHHHHHHHhcccCCceEEEcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -ccceEEEEcCCCCcee-eeccccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCCCEEEEeeeeeEEEe
Q 003764 589 -NPLKVVITNMESGTIM-HLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCT 666 (797)
Q Consensus 589 -dp~kl~i~n~~~~~~~-~~~~p~~p~~~~~~~~g~~~v~~~~~iyie~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~ 666 (797)
||+||+|+|+|.+..+ .+.+|+||+ +|++|+|.|+|+++||||++||+ +|+||++|+|++.+||+|+
T Consensus 327 ~~pv~v~i~n~~~~~~~~~~~~p~hP~---~~~~G~r~v~~~~~iyIe~~D~~--------~l~~g~~vrL~~~~~i~~~ 395 (523)
T PLN03233 327 ADHTALTVTNADEEADFAFSETDCHPK---DPGFGKRAMRICDEVLLEKADTE--------DIQLGEDIVLLRWGVIEIS 395 (523)
T ss_pred CCcEEEEecCCCCccceeccccccCCC---CCCCceEEEEECCcEEEEHhHHh--------hcCCCCEEEeCceeeEEEE
Confidence 6999999999876432 347899888 79999999999999999999996 4999999988888899999
Q ss_pred EeeecCCCCCEEEEEEEEcCCCCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCceeecee
Q 003764 667 EVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEA 746 (797)
Q Consensus 667 ~~~~~~~~g~v~e~~~~~~~~~~~k~k~~I~Wv~~~~~~~~~~~~e~r~y~~Lf~~~~p~~~~~~~~~~n~~S~~~~~~~ 746 (797)
+++ +|.+|+++ . +. ..+|++++|||||+. .+.++|++|+|++||++++|++.++|+++|||+|+.+. .|
T Consensus 396 ~~~-~d~~~~~~---~--~~-d~~~~k~~I~Wv~~~---~~~~~~~~~~yd~L~~~~~~~~~~~~~~~~n~~S~~~~-~~ 464 (523)
T PLN03233 396 KID-GDLEGHFI---P--DG-DFKAAKKKISWIADV---SDNIPVVLSEFDNLIIKEKLEEDDKFEDFINPDTLAET-DV 464 (523)
T ss_pred EEE-ecCceEEe---e--CC-CCcccccEEEEcCCC---CCccceEEEecccccCCCCCCcccChhhhcCCCceEEE-eE
Confidence 998 77777554 1 22 235788899999852 35789999999999999999988999999999999998 79
Q ss_pred EeccccccCCCCCeEEEEEeeeEEEecC-CCCCc-eeEeeecCCCCCC
Q 003764 747 YAEPSLHSAAVGDRFQFERLGYFAVDKD-STPEK-LVFNRTVTLKDSF 792 (797)
Q Consensus 747 ~~e~~~~~~~~~~~~QfeR~Gyf~~D~~-~~~~~-~v~n~~v~lk~~~ 792 (797)
|+|+++.++++|++|||||+|||+||+. +++++ +||+.|+.-|...
T Consensus 465 ~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~~~~~~~ipdg~~k~ 512 (523)
T PLN03233 465 IGDAGLKTLKEHDIIQLERRGFYRVDRPYMGEEKPLILFMIPDGKKKA 512 (523)
T ss_pred EEchhHhhCCCCCeEEEEEeeEEEEccCCCCCCceEEEEECCCCCccc
Confidence 9999999999999999999999999974 54444 6999999877553
No 8
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.3e-134 Score=1144.92 Aligned_cols=505 Identities=33% Similarity=0.506 Sum_probs=476.7
Q ss_pred hcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCc-ccCCch
Q 003764 270 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSD 348 (797)
Q Consensus 270 ~~~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~-~~~qSd 348 (797)
+++|+|+|||||||||||||||||||++||++||++||+|+||||||||+|+.++|+++|+++|+|||+.||+ ++|||+
T Consensus 48 a~~~~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDTDp~R~~~e~~d~IleDL~WLGl~wDe~~~~QSd 127 (601)
T PTZ00402 48 AEEGKVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDLATLGVSWDVGPTYSSD 127 (601)
T ss_pred CCCCeeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCcccCHHHHHHHHHHHHHCCCCCCCceeeccc
Confidence 4568899999999999999999999999999999999999999999999999999999999999999999997 899999
Q ss_pred hHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCc
Q 003764 349 YFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNM 428 (797)
Q Consensus 349 ~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~ 428 (797)
||+.||++|++||++|+||+|+||+++|++.|..+++++||+++++|++.+|+.|++|.+.+|.+++|+|+++.+++.+|
T Consensus 128 r~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~n~~~ 207 (601)
T PTZ00402 128 YMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAM 207 (601)
T ss_pred cHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEecccCCCCCCc
Confidence 99999999999999999999999999999988888999999999999999999999998888899999999999999999
Q ss_pred CccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCceeeeeeccCCCc
Q 003764 429 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNT 508 (797)
Q Consensus 429 ~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~~f~~Ln~~g~ 508 (797)
+|+|+||+...+||++|++|+||||||||||||||+|||||||||.||++||++|.||+++|||+.|.||||++||++|+
T Consensus 208 rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg~~~P~~~h~~rLn~~g~ 287 (601)
T PTZ00402 208 RDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRKPIVEDFSRLNMEYS 287 (601)
T ss_pred cCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhCCCCceEEEEeeEcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhhhccCCceeeEe
Q 003764 509 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVL 588 (797)
Q Consensus 509 kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~ 588 (797)
|||||++..+|++|+|.||||||++||++||||||+|+||++||..+|++++++.++++.|++++|+++++.+||+|+|+
T Consensus 288 kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~~L~~~nr~~l~~~a~R~maV~ 367 (601)
T PTZ00402 288 VMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLWYFNTQILDPSVPRYTVVS 367 (601)
T ss_pred cccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhhcCCceEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEcCCCCceeeeccccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCCCEEEEeeeeeEEEeEe
Q 003764 589 NPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEV 668 (797)
Q Consensus 589 dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyie~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~ 668 (797)
||+||+|+|.+.+..+.+++|+||+ +|++|+|.++|+++||||++||. +|+||++|+|+..+|+.|+++
T Consensus 368 ~p~kv~i~~~~~~~~~~~~~p~hP~---~~~~G~r~i~~~~~iyIe~~D~~--------~l~~g~~vrL~~~gn~~i~~~ 436 (601)
T PTZ00402 368 NTLKVRCTVEGQIHLEACEKLLHKK---VPDMGEKTYYKSDVIFLDAEDVA--------LLKEGDEVTLMDWGNAYIKNI 436 (601)
T ss_pred CCCEEEEEECCCCcceEeeccCCCC---CcccCceEEEECCeEEEEhhhHh--------hcCCCCEEEEeccCCEEEEEE
Confidence 9999999999877666778899888 79999999999999999999986 599999998876678888887
Q ss_pred eecCCCCCEEEEEEEEcCC-CCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCceeeceeE
Q 003764 669 ILSDDKETILHIRAEYDPS-KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAY 747 (797)
Q Consensus 669 ~~~~~~g~v~e~~~~~~~~-~~~k~k~~I~Wv~~~~~~~~~~~~e~r~y~~Lf~~~~p~~~~~~~~~~n~~S~~~~~~~~ 747 (797)
..++++|+|++++|++++. ..+|+|++|||||+. .+.+++++|+|++||++++|++.++|++.+||+|+.+. .||
T Consensus 437 ~~~~~~g~v~~~~~~~~~~~~~kk~k~~IhWv~~~---~~~~~~~~r~yd~Lf~~~~p~~~~~~~~~ln~~s~~~~-~~~ 512 (601)
T PTZ00402 437 RRSGEDALITDADIVLHLEGDVKKTKFKLTWVPES---PKAEVMELNEYDHLLTKKKPDPEESIDDIIAPVTKYTQ-EVY 512 (601)
T ss_pred EeeCCCCcEEEEEEEECCCCCCCcCCCeEEEecCC---CCcceEEEEecccccCCCCCCccccHHHhcCCCChheE-EEE
Confidence 6456789999999999875 347888999999973 25678999999999999999988899999999999985 799
Q ss_pred eccccccCCCCCeEEEEEeeeEEEecCCCCCceeEeeecCCCCC
Q 003764 748 AEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDS 791 (797)
Q Consensus 748 ~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~v~n~~v~lk~~ 791 (797)
+||++.++++|++|||||+|||+||+++++ .||..|++-|..
T Consensus 513 ~E~~~~~~~~~~~~QfeR~Gyf~~D~~~~~--~vl~~ipdg~~~ 554 (601)
T PTZ00402 513 GEEALSVLKKGDIIQLERRGYYIVDDVTPK--KVLIAIPDGREK 554 (601)
T ss_pred EchhHhhCCCCCEEeEEEeEEEEEecCCCC--eEEEECCCCccc
Confidence 999999999999999999999999986533 389999987755
No 9
>PLN02907 glutamate-tRNA ligase
Probab=100.00 E-value=5.6e-130 Score=1148.99 Aligned_cols=501 Identities=31% Similarity=0.530 Sum_probs=475.1
Q ss_pred CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCcccCCchhHH
Q 003764 272 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQ 351 (797)
Q Consensus 272 ~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~~~~qSd~~~ 351 (797)
+|+|+|||||||||||||||||+|++||+|||++||+|+||||||||+|+.++|+++|+++|+|||++||+++|||+||+
T Consensus 211 ~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDTdp~r~~~e~~~~I~~dl~wLG~~~d~~~~qS~r~~ 290 (722)
T PLN02907 211 EGKVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKDIETLGIKYDAVTYTSDYFP 290 (722)
T ss_pred CCceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCcCChHHHHHHHHHHHHcCCCCCCcccccccHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCcc
Q 003764 352 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 431 (797)
Q Consensus 352 ~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~ 431 (797)
.||++|.+||++|+||+|+|+++++++.|..+|+|+||+++++|++++|++|++|.+.+++++||+|+|+.++|.+|+|+
T Consensus 291 ~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n~~~~D~ 370 (722)
T PLN02907 291 QLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDP 370 (722)
T ss_pred HHHHHHHHHHHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCCCCcccC
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCceeeeeeccCCCceec
Q 003764 432 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMS 511 (797)
Q Consensus 432 V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~~f~~Ln~~g~kLS 511 (797)
|+||+...+||++||+|++|||||||||||||+|||||||||.||++||++|.||+++|||+.|.+|+|+|||++|+|||
T Consensus 371 v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg~~~p~~~~f~~l~~~~~~lS 450 (722)
T PLN02907 371 VYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGLRKVHIWEFSRLNFVYTLLS 450 (722)
T ss_pred EEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcCCCCCeeEEEEEEcCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhhhccCCceeeEecc-
Q 003764 512 KRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNP- 590 (797)
Q Consensus 512 KRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~dp- 590 (797)
||++.++|++|+|+||||||++|+++||||||+|+||++||..+|+|+++..++++.|++++|+++++.+||+|+|+||
T Consensus 451 KR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~l~~~nr~~id~~a~R~~~v~~p~ 530 (722)
T PLN02907 451 KRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVLKEG 530 (722)
T ss_pred ccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHHHHHHHHHHhccCCCceeEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -ceEEEEcCCCCceeeeccccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCCCEEEEeeeeeEEEeEee
Q 003764 591 -LKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVI 669 (797)
Q Consensus 591 -~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyie~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~~ 669 (797)
++|+|+|+|+. ...+.+|+||+ +|++|+|.++|++.||||++||+. |+||++|+|++.+|+.|+++.
T Consensus 531 ~v~~~i~~~~~~-~~~~~~p~hp~---~~~~g~r~~~~~~~i~i~~~D~~~--------l~~g~~v~L~~~~~~~i~~~~ 598 (722)
T PLN02907 531 RVLLTLTDGPET-PFVRIIPRHKK---YEGAGKKATTFTNRIWLDYADAEA--------ISEGEEVTLMDWGNAIIKEIT 598 (722)
T ss_pred EEEEEEcCCCCC-ceeeeccCCCC---CCccceEEEEECCcEEEEcchHhh--------cCCCCEEEEcccCCEEEEEEE
Confidence 77889998764 35678888887 799999999999999999999974 899999988877899999998
Q ss_pred ecCCCCCEEEEEEEEcCC-CCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCceeeceeEe
Q 003764 670 LSDDKETILHIRAEYDPS-KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYA 748 (797)
Q Consensus 670 ~~~~~g~v~e~~~~~~~~-~~~k~k~~I~Wv~~~~~~~~~~~~e~r~y~~Lf~~~~p~~~~~~~~~~n~~S~~~~~~~~~ 748 (797)
+|++|+|++++|+|+++ ..+|+|++|||||+. ...++|++|+|++||++++|++.++|+++|||+|+.+. .||+
T Consensus 599 -~~~~g~v~~~~~~~~~~~~~~k~k~~i~Wv~~~---~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~n~~s~~~~-~~~~ 673 (722)
T PLN02907 599 -KDEGGAVTALSGELHLEGSVKTTKLKLTWLPDT---NELVPLSLVEFDYLITKKKLEEDDNFLDVLNPCTKKET-AALG 673 (722)
T ss_pred -ECCCCcEEEEEEEEccccCCCcCCCeEEEecCC---CCceEEEEEccccccccCCCccccchhHhcCCCceeEE-EEEE
Confidence 88999999999999876 447888999999972 25799999999999999999988999999999999998 6999
Q ss_pred ccccccCCCCCeEEEEEeeeEEEecC-CCCC-ceeEeeecCCC
Q 003764 749 EPSLHSAAVGDRFQFERLGYFAVDKD-STPE-KLVFNRTVTLK 789 (797)
Q Consensus 749 e~~~~~~~~~~~~QfeR~Gyf~~D~~-~~~~-~~v~n~~v~lk 789 (797)
||++.++++|++|||||+|||+||+. ++++ .+||-.|++-|
T Consensus 674 e~~~~~~~~~~~~QfeR~Gy~~~D~~~~~~~~~~~~~~ip~~~ 716 (722)
T PLN02907 674 DSNMRNLKRGEIIQLERKGYYRCDAPFVRSSKPIVLFAIPDGR 716 (722)
T ss_pred cHhHhhCCCCCeEEEEEeEEEEECcCCCCCCceEEEEECCCCC
Confidence 99999999999999999999999974 4444 46887777643
No 10
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.5e-119 Score=1023.12 Aligned_cols=452 Identities=33% Similarity=0.535 Sum_probs=427.1
Q ss_pred CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCc--hhchHHHHHHHHHHHHHcCCCCCcccCCchh
Q 003764 272 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP--EAEKKEYIDHIEEIVQWMGWEPFKITYTSDY 349 (797)
Q Consensus 272 ~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp--~re~~e~~~~I~e~L~wLGl~pd~~~~qSd~ 349 (797)
+|+|+|||||||||||||||||+|++||++||+|||+|+|||||||| +|+.++|+++|+++|+|||+.||+++|||+|
T Consensus 99 ~g~V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~~R~~~e~~~~I~edL~wLGl~wD~~~~qSdr 178 (567)
T PRK04156 99 KGKVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILEDLKWLGVKWDEVVIQSDR 178 (567)
T ss_pred CCeEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCcccchHHHHHHHHHHHHHcCCCCCCccCcccC
Confidence 67899999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcC
Q 003764 350 FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMY 429 (797)
Q Consensus 350 ~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~ 429 (797)
|+.||++|++||++|+||+|+||++++++.|..+++|+||++++++++.+|++|.+|.+.+|+++||+|+|+.+++++|+
T Consensus 179 ~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~~~r 258 (567)
T PRK04156 179 LEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVR 258 (567)
T ss_pred HHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCCCcc
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCceeeeeeccCCCce
Q 003764 430 DLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTV 509 (797)
Q Consensus 430 D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~~f~~Ln~~g~k 509 (797)
|+|+||+...+||++|++|++|||||||||||||+|||||||||.||++||++|.||+++|||..|.|+||++|+.+|+|
T Consensus 259 D~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg~~~P~~~H~~~L~~~g~k 338 (567)
T PRK04156 259 DWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLKIEGFV 338 (567)
T ss_pred ccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcCCCCceEEEcceecCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhhhccCCceeeEec
Q 003764 510 MSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLN 589 (797)
Q Consensus 510 LSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~d 589 (797)
||||++.++|++|.|+||||||++||++||++||+|+||++||+.+||+.++..++++.|++++|+.+++.++|+|+|.|
T Consensus 339 LSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~~~L~~~nr~~ld~~a~R~~~V~~ 418 (567)
T PRK04156 339 LSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYAINRKLIDPIANRYFFVRD 418 (567)
T ss_pred eecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhccCCceEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEcCCCCceeeeccccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCCCEEEEeeeeeEEEeEee
Q 003764 590 PLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVI 669 (797)
Q Consensus 590 p~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyie~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~~ 669 (797)
|+||+|+|.+. ..+++|+||+ +|++|+|.++|++.||||++||++. |+.|+|+++|||+|+++.
T Consensus 419 pv~v~i~~~~~---~~~~~p~hP~---~~~~G~r~v~~~~~i~i~~~D~~~~----------g~~vrL~~~~nv~~~~~~ 482 (567)
T PRK04156 419 PVELEIEGAEP---LEAKIPLHPD---RPERGEREIPVGGKVYVSSDDLEAE----------GKMVRLMDLFNVEITGVS 482 (567)
T ss_pred ceEEEEcCCCc---eEEEcCCCCC---CCCCceEEEEECCeEEEEHHHHhhc----------CCEEEeeeEEEEEEEEEE
Confidence 99999999643 4678899988 7999999999999999999999862 999999999999999864
Q ss_pred ecCCCCCEEEEEEEEcCC---CCCCCC-eeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCceeece
Q 003764 670 LSDDKETILHIRAEYDPS---KKTKPK-GVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPE 745 (797)
Q Consensus 670 ~~~~~g~v~e~~~~~~~~---~~~k~k-~~I~Wv~~~~~~~~~~~~e~r~y~~Lf~~~~p~~~~~~~~~~n~~S~~~~~~ 745 (797)
+++|+|+++ ..+|++ .+|||||+ .++++|+||.++ . .+. .
T Consensus 483 ---------~~~~~~~~~~~~~~~k~~~~~i~Wv~~----~~~v~~~v~~~~---------~-------------~~~-~ 526 (567)
T PRK04156 483 ---------VDKARYHSDDLEEARKNKAPIIQWVPE----DESVPVRVLKPD---------G-------------GDI-E 526 (567)
T ss_pred ---------EEEEEEcCCccccccccCCCEEEEccC----CCCeeEEEECCC---------c-------------eEE-E
Confidence 478888765 336676 59999997 458999998631 1 233 6
Q ss_pred eEeccccccCCCCCeEEEEEeeeEEEecCC
Q 003764 746 AYAEPSLHSAAVGDRFQFERLGYFAVDKDS 775 (797)
Q Consensus 746 ~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~ 775 (797)
|++|+++.++++|++|||||+|||+||+..
T Consensus 527 g~~E~~~~~~~~~~~~QfeR~Gf~~~D~~~ 556 (567)
T PRK04156 527 GLAEPDVADLEVDDIVQFERFGFVRIDSVE 556 (567)
T ss_pred EEEchhHhhCCCCCEEEEEEeEEEEEecCC
Confidence 999999999999999999999999999864
No 11
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=100.00 E-value=9.7e-118 Score=1013.61 Aligned_cols=464 Identities=30% Similarity=0.512 Sum_probs=427.7
Q ss_pred CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCcccCCchhHH
Q 003764 272 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQ 351 (797)
Q Consensus 272 ~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~~~~qSd~~~ 351 (797)
.|+|||||||||||||||||||+|++||++||+|||+|+||||||||+|+.++|+++|+++|+|||+.||++++||+||+
T Consensus 91 ~~~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDTDp~R~~~e~~~~I~edL~wLGi~~d~~~~qSd~~~ 170 (560)
T TIGR00463 91 MGEVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDTDPRRVKPEAYDMILEDLDWLGVKGDEVVYQSDRIE 170 (560)
T ss_pred CCeeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcCCcccccHHHHHHHHHHHHHcCCCCCccccccccHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCcc
Q 003764 352 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 431 (797)
Q Consensus 352 ~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~ 431 (797)
.||++|++||++|+||+|+||+++|++.|+.+|+|+||+++++|++++|++|++|.+.+|+++||+|+|+.++|++|+|+
T Consensus 171 ~y~~~a~~Li~~G~AY~C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~lR~K~d~~~~n~~~rD~ 250 (560)
T TIGR00463 171 EYYDYCRKLIEMGKAYVCDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEGGKVVVRAKTDYKHKNPAIRDW 250 (560)
T ss_pred HHHHHHHHHHHcCCceeecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEECCCcCCCccccCc
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCceeeeeeccCCC-cee
Q 003764 432 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSN-TVM 510 (797)
Q Consensus 432 V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~~f~~Ln~~g-~kL 510 (797)
|+||+...+||++||+|++|||||||||||||+|||||||||.||++||++|.+++.+|||..|.++||+++..++ .+|
T Consensus 251 V~~R~~~~~h~~~Gd~~~~~PtYdfA~~VDD~l~gITHviRg~E~~~nT~rq~yl~~~lg~~~P~~~h~~~l~~~~~~kL 330 (560)
T TIGR00463 251 VIFRINKTPHPRTGDKYKVYPTMDFSVPIDDHLLGVTHVLRGKDHIDNERKQQYIYMYFGWELPEFIHWGRLKINDVRTL 330 (560)
T ss_pred EEEEecCCCccccCCEEEEEeccccceEeecccCCCCeEEechhhhcCCHHHHHHHHHcCCCCCeEEEEcceecCCCcEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876554 588
Q ss_pred cccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhhhccCCceeeEecc
Q 003764 511 SKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNP 590 (797)
Q Consensus 511 SKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~dp 590 (797)
|||.....+.+|.|+||||||++||++||+||++|+||++||..+|||.++++++|+.|++++|+.+++.+||+|+|.||
T Consensus 331 skk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nr~~id~~a~R~~~V~~p 410 (560)
T TIGR00463 331 STSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRNDVNLSWKNIYAFNKKIIDPIARRYFFIWNP 410 (560)
T ss_pred cchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCceeeHHHHHHHHHHHhCcCCCceEEEcCC
Confidence 88776666667999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCCCCceeeeccccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCCCEEEEeeeeeEEEeEeee
Q 003764 591 LKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVIL 670 (797)
Q Consensus 591 ~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyie~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~~~ 670 (797)
++|.|+|+|.. ...++|+||+ +|++|+|.|+|++.||||++||++ +||++|+|++.|||+|+++.
T Consensus 411 ~~v~i~~~~~~--~~~~~p~hp~---~~~~G~r~v~~~~~i~i~~~D~~~---------~~g~~vrL~~~~ni~~~~~~- 475 (560)
T TIGR00463 411 VKIEIEGAPEP--KIVERPLHPD---NPEVGERKLIYYGEIYVDKDDLEV---------IEGEEVRLMDWGNVIITKKN- 475 (560)
T ss_pred cEEEEecCCCC--eeEEccCCCC---CCCCceEEEEECCeEEEEHHHHhh---------CCCCEEEEeecccEEEEEEe-
Confidence 99999998753 3457888887 799999999999999999999974 59999988888999999986
Q ss_pred cCCCCCEEEEEEEEcCC-CCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCceeeceeEec
Q 003764 671 SDDKETILHIRAEYDPS-KKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAE 749 (797)
Q Consensus 671 ~~~~g~v~e~~~~~~~~-~~~k~k~~I~Wv~~~~~~~~~~~~e~r~y~~Lf~~~~p~~~~~~~~~~n~~S~~~~~~~~~e 749 (797)
++ |.+ .+.++.+ ..+|++++|||||+ .+.++|+++.|++|++ .|++|
T Consensus 476 ~~--~~~---~~~~~~~~~~~~~~~~i~Wv~~----~~~v~~~~~~~d~l~~-----------------------~~~~E 523 (560)
T TIGR00463 476 DD--GSM---YHSLNLEGARKKGKHIIHWLPD----KDAVKVKVIMPDHLIT-----------------------EGRLE 523 (560)
T ss_pred CC--CcE---EeccccccccccCCCEEEECcC----CCceEEEEEcCccccc-----------------------cCccC
Confidence 43 432 2334433 33678899999997 4689999999988742 37888
Q ss_pred cccccCCCCCeEEEEEeeeEEEecCCCC-CceeE
Q 003764 750 PSLHSAAVGDRFQFERLGYFAVDKDSTP-EKLVF 782 (797)
Q Consensus 750 ~~~~~~~~~~~~QfeR~Gyf~~D~~~~~-~~~v~ 782 (797)
+++...++|++|||||+|||+||+...+ ...||
T Consensus 524 ~~~~~~~~~~~vQfeR~Gy~~~D~~~~~~~~~~f 557 (560)
T TIGR00463 524 EDASFEEVGDIIQFERFGFYRLDSADKDGKVYVY 557 (560)
T ss_pred cchhhcCCCCEEEEEEeEEEEEccCCCCCceEEE
Confidence 9888889999999999999999987544 45677
No 12
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-116 Score=962.81 Aligned_cols=503 Identities=35% Similarity=0.599 Sum_probs=471.2
Q ss_pred hcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCcccCCchh
Q 003764 270 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDY 349 (797)
Q Consensus 270 ~~~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~~~~qSd~ 349 (797)
+..|+|+|||||+|+||||||||+|||+|+.||.+++|++|+|||||||++|..+|++.|++||..|||+||.++|+|||
T Consensus 196 ae~GkVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRFDDTNPaKE~~eFe~~IleDl~~LgIkpd~~TyTSDy 275 (712)
T KOG1147|consen 196 AEMGKVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDDTNPAKENEEFEDVILEDLSLLGIKPDRVTYTSDY 275 (712)
T ss_pred cccCceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEEecCCCcchhhHHHHHHHHHHHHHhCcCcceeeechhh
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcC
Q 003764 350 FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMY 429 (797)
Q Consensus 350 ~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~ 429 (797)
|+.+++++++||+.|+||++....|+|+..|+.+.+|.||++++||||++|++|..|....-.+|+|+|+||+++|.+|+
T Consensus 276 F~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~~~vEenl~iw~EM~kGs~~Gl~~CvRaKIdm~s~NkaMR 355 (712)
T KOG1147|consen 276 FDEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCRSNSVEENLRIWEEMKKGSEKGLKCCVRAKIDMSSPNKAMR 355 (712)
T ss_pred HHHHHHHHHHHHhcCcccccCCcHHHHHHHHhccccccccCCCHHHHHHHHHHHhccchhhhhhheeeeecccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999986544799999999999999999
Q ss_pred ccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCceeeeeeccCCCce
Q 003764 430 DLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTV 509 (797)
Q Consensus 430 D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~~f~~Ln~~g~k 509 (797)
|||+||+...||||+|++|.+||||||||+|.|+++||||.||+.|++++.++|+|++++||+.+|..|+|+|||+.+|+
T Consensus 356 DPviYRcn~~pHhRTG~KYkvYPTYDFaCPIVDslEGVThaLRttEYhDRn~Qyyw~i~al~LRkp~iwefsRlN~~nTv 435 (712)
T KOG1147|consen 356 DPVIYRCNPEPHHRTGDKYKVYPTYDFACPIVDSLEGVTHALRTTEYHDRNAQYYWFIDALGLRKPHIWEFSRLNFVNTV 435 (712)
T ss_pred CCeeEecCCCCCCcCCCceeeecccccccccchhhhhhhhhhhhhhccccchHHHHHHHHhcCCccceeehhhhhhHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhhhccCCceeeEec
Q 003764 510 MSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLN 589 (797)
Q Consensus 510 LSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~d 589 (797)
||||++.++|++|+|+||||||++|+++.+|||.+.|++++|++.+|.|++..+++|+.+|+++++.+++.+||+.||..
T Consensus 436 LSKRKLtwfVd~GlV~GWDDPRfpTVrGv~RrGmtvEgLkqfIl~QG~Sk~v~~meWdkiWAfNKKvIDPVapRytav~~ 515 (712)
T KOG1147|consen 436 LSKRKLTWFVDEGLVDGWDDPRFPTVRGVRRRGMTVEGLKQFILAQGPSKNVVTMEWDKIWAFNKKVIDPVAPRYTAVVK 515 (712)
T ss_pred hhhhheeeeeccCcccCCCCCCcchhHHHHHcCccHHHHHHHHHHhCCccceeeeehHhhhhhcccccCCCCccceeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cceE--EEEcCCCCceeeeccccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCCCEE-EEeeeeeEEEe
Q 003764 590 PLKV--VITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSV-LLRYAFPIKCT 666 (797)
Q Consensus 590 p~kl--~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyie~~D~~~~~~~~~~~l~~g~~v-~l~~~~~i~~~ 666 (797)
+..| ++.|.|.++..+ .. |.|+|||+.|.+.+.|++.||||+.|++. |..|+.| +|.| ||+.|+
T Consensus 516 ~~~V~v~i~~~~~~~~~~-~~---PkHkKn~~lG~K~v~~~~~I~le~~Da~~--------l~~gEevTlmnW-GN~~i~ 582 (712)
T KOG1147|consen 516 EDRVEVTITNGPQEEYIE-VS---PKHKKNPELGEKKVIYSKKILLEQADAEA--------LKEGEEVTLMNW-GNAIIK 582 (712)
T ss_pred CceEEEecCCCCCcchhh-cc---ccCCCCcccCccceeeccceeEeccchhh--------hcCCcEEEEEec-cceeeE
Confidence 6544 455655543322 23 44555999999999999999999999987 8999999 9999 799999
Q ss_pred EeeecCCCCCEEEEEEEEcCCCC-CCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCceeece
Q 003764 667 EVILSDDKETILHIRAEYDPSKK-TKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPE 745 (797)
Q Consensus 667 ~~~~~~~~g~v~e~~~~~~~~~~-~k~k~~I~Wv~~~~~~~~~~~~e~r~y~~Lf~~~~p~~~~~~~~~~n~~S~~~~~~ 745 (797)
++. +|++|+||.+.++++.++. +|+|.+++|++.. .++++|.+..|++|++++..+++++|.+.+||+|.... .
T Consensus 583 ki~-kd~sg~vtsl~a~LnldgDfKkTk~KlTWLadt---~~~vpv~lv~fd~lItK~~le~dEd~k~f~n~~t~~~~-~ 657 (712)
T KOG1147|consen 583 KIN-KDASGKVTSLSAKLNLDGDFKKTKLKLTWLADT---NDSVPVDLVDFDHLITKDKLEKDEDFKDFVNPNTVKET-L 657 (712)
T ss_pred Eee-ccCCceEEEEEEEeccCCccccccceeEEeccC---CCccceEEeechhhcchhhcccchhHHHhcCCCccccc-h
Confidence 998 9999999999999987744 6788999999984 57899999999999999999999999999999999876 6
Q ss_pred eEeccccccCCCCCeEEEEEeeeEEEecC-C-CCCceeEeeecCCCC
Q 003764 746 AYAEPSLHSAAVGDRFQFERLGYFAVDKD-S-TPEKLVFNRTVTLKD 790 (797)
Q Consensus 746 ~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~-~-~~~~~v~n~~v~lk~ 790 (797)
+++|++++++++||+|||||.|||+||.. + .+..+||+.|+.-|.
T Consensus 658 ~~gd~~ikn~KkGDIIQ~eRkGfy~~D~p~~~~~~p~Vlf~IPdg~t 704 (712)
T KOG1147|consen 658 MLGDPAIKNLKKGDIIQLERKGFYICDVPLPKDGKPLVLFSIPDGKT 704 (712)
T ss_pred hccChhhhccccCceEEEeccceEEeccccCCCCCcEEEEECCCCCc
Confidence 99999999999999999999999999963 2 346799999998775
No 13
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-90 Score=777.28 Aligned_cols=448 Identities=33% Similarity=0.484 Sum_probs=376.9
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCc-ccCCchhHHHH
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQEL 353 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~-~~~qSd~~~~~ 353 (797)
|+|||||||||+||||||||||+||+|||+|||+|+||||||||+|+.++|+++|+++|+|||++||+ ++|||+||+.|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDTD~~R~~~e~~~~I~~~L~WLGl~wde~~~~QS~r~~~Y 89 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLEWLGLDWDEGPYYQSERFDIY 89 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHHhcCCCCCCceeehhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHcCccccCCCCHHHHHHHhc---c-C-CC-CCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCC
Q 003764 354 YELAVELIRRGHAYVDHQTPEEIKEYRE---K-K-MN-SPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFN 427 (797)
Q Consensus 354 ye~a~~LI~~G~AY~C~cs~eel~~~r~---~-~-~~-~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~ 427 (797)
|++|++||++|+||+|+||++||.+.|. . + -| +.+|. +++|..|+.|..... ++++|+|+|+|+.++++.
T Consensus 90 ~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~---~~~L~~~~~~~~~~~-~~~~viR~k~~~~~~~~~ 165 (472)
T COG0008 90 YEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRD---ERNLTLFEKMADLGE-GGPAVVRLKIPMAHPGPV 165 (472)
T ss_pred HHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCch---hhccchHHHHhhccc-CCCeEEEEeCCCCCCCCc
Confidence 9999999999999999999988877764 1 1 12 44443 566777888877322 678999999998767778
Q ss_pred cCccEEEEEecCC-CCC-CCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCceeeeeec-c
Q 003764 428 MYDLIAYRIKFTP-HPH-AGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-N 504 (797)
Q Consensus 428 ~~D~V~~r~~~~~-h~~-~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~~f~~L-n 504 (797)
|+|+|.||+.+.+ |+. ++.+|+||||||||||||||+|||||||||+||++||++|.|||++|||+.|.|+||+++ +
T Consensus 166 ~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~ 245 (472)
T COG0008 166 FRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLN 245 (472)
T ss_pred cccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeeec
Confidence 9999999999988 888 899999999999999999999999999999999999999999999999999999999985 5
Q ss_pred CCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhhhccCCce
Q 003764 505 VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRT 584 (797)
Q Consensus 505 ~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~ 584 (797)
.+|+|||||++...+....+.||+|||+.|+.+++++|++|+++..|+...|++..+.+..+..++.++++.++...+|+
T Consensus 246 ~~g~kLSKr~~~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~fd~~~~~~~~~~fd~~kL~~~n~ry 325 (472)
T COG0008 246 EDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPAAFDRKKLDWLNPRY 325 (472)
T ss_pred CCCCeecCccCccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhhhhhhhhcccccccHHHhHhhhHHH
Confidence 67779999999877777789999999999999999999999999999999999988888888899999999999999999
Q ss_pred eeEeccceEEEEcCCC-CceeeeccccCCCCCCCCCCceeEecccc--eEEEecCcccccCCccccCcCCCCEEEEeeee
Q 003764 585 MVVLNPLKVVITNMES-GTIMHLDAKRWPDAQADDASAFYKVPFSN--VVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAF 661 (797)
Q Consensus 585 ~av~dp~kl~i~n~~~-~~~~~~~~p~~p~~~~~~~~g~~~v~~~~--~iyie~~D~~~~~~~~~~~l~~g~~v~l~~~~ 661 (797)
|.+ +|.++.+.+++. .......+|+ ++++|.+.+++.+ .++|++.|+.. +.+++.++++...
T Consensus 326 ~~~-~p~e~~~~~l~~~~~~~~~~~~~------~~e~~~~~~~l~~~~~~~i~~~~~~~--------~~~~~~~~~~~l~ 390 (472)
T COG0008 326 MRV-DPVEVVIENLKPHLEEEGATLPL------NPEMGERVVPLTKETLIEIERLDFFF--------FEDKEEVRLKRLA 390 (472)
T ss_pred HHh-CCHHHHHHhhhhhhhhhcccCCC------CHHHHhhhhhhccchHHHHhHHHHHH--------hcchHHHHHHhhc
Confidence 999 999999999764 2222333333 4789999999999 99999998765 3334666665544
Q ss_pred eEEEeEeeecCCCCCEEEEEEEEcCCCCCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCce
Q 003764 662 PIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKV 741 (797)
Q Consensus 662 ~i~~~~~~~~~~~g~v~e~~~~~~~~~~~k~k~~I~Wv~~~~~~~~~~~~e~r~y~~Lf~~~~p~~~~~~~~~~n~~S~~ 741 (797)
++...++......+.... ...+..++|||++. . .+|..+.| ++++.+..
T Consensus 391 ~~~~~~~l~~~~~~l~~~---------~~~~~~i~~wv~~~----~----------~~~~vk~~--------~~~~plr~ 439 (472)
T COG0008 391 NVIVAEVLEKDAEGLITS---------DWTKENIIHWVKAV----A----------RLFGVKGP--------KLFPPLRV 439 (472)
T ss_pred chHHHHHHHHHHHhhhhc---------cccHHHHHHHHHHH----H----------HHhCCCCc--------ccchhhHH
Confidence 543333221222222211 12244599999862 1 45666666 47888998
Q ss_pred eeceeEeccccccCCCC--CeEEEEEeeeEEEe
Q 003764 742 VIPEAYAEPSLHSAAVG--DRFQFERLGYFAVD 772 (797)
Q Consensus 742 ~~~~~~~e~~~~~~~~~--~~~QfeR~Gyf~~D 772 (797)
+.++++++|.+.+.... ..+||+|+|||+.|
T Consensus 440 a~tG~~~~p~l~~~~~~~g~~~q~~Rl~~~~~~ 472 (472)
T COG0008 440 ALTGGYVEPELADTIELLGKEVQFERLGYALAD 472 (472)
T ss_pred HhcCCccCCCHHHHHHhhchHHHHHHHHHHhhC
Confidence 88889999998765554 45999999999875
No 14
>PLN02627 glutamyl-tRNA synthetase
Probab=100.00 E-value=2.8e-74 Score=651.44 Aligned_cols=321 Identities=22% Similarity=0.331 Sum_probs=277.3
Q ss_pred HHHhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCc-
Q 003764 264 LDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK- 342 (797)
Q Consensus 264 ~~~~~~~~~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~- 342 (797)
+-.|.+.+.|+|||||||||||+|||||||+||+||+|||++||+|||||||||++|+.++|++.|+++|+|||++||+
T Consensus 35 ~~~~~~~~~~~vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~I~~~L~WLGl~wDeg 114 (535)
T PLN02627 35 AAAAGESKGGPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLDWDEG 114 (535)
T ss_pred ecccccCCCCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCcC
Confidence 3345556678899999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred --------ccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhc--------cCCCCCCCCCChHHHhHHHHHhhcC
Q 003764 343 --------ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNG 406 (797)
Q Consensus 343 --------~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~--------~~~~~~~R~~s~ee~l~~fe~m~~G 406 (797)
+|+||+|++.|+++|++|+++|+||+|+||++++++.|. +.|++.||+++.+++.+.+. .|
T Consensus 115 p~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~---~g 191 (535)
T PLN02627 115 PDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAELA---KG 191 (535)
T ss_pred cccCCCCCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHHh---CC
Confidence 489999999999999999999999999999999988764 46999999999988754322 22
Q ss_pred cccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-----cccccccccchhhhccCCccEEecCcccccchh
Q 003764 407 RIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRA 481 (797)
Q Consensus 407 ~~~~g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~-----~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~ 481 (797)
.++++|+|++. .+...+.|.|.+.+.+... ..+ +| +|+||||||||||||+|||||||||+||++||+
T Consensus 192 ----~~~~iR~k~p~-~~~~~~~D~i~G~i~~~~~-~~~-D~Vi~R~DG~PtY~fA~vVDD~~mgITHViRG~D~l~nTp 264 (535)
T PLN02627 192 ----TPYTYRFRVPK-EGSVKIDDLIRGEVSWNTD-TLG-DFVLLRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTL 264 (535)
T ss_pred ----CCceEEEEcCC-CCceEEEeeeeeeeeeccc-cCC-CeEEEecCCCccccccceecccccCCcEEEechhhhcChH
Confidence 25789999863 3445677777777765543 223 33 579999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCceeeeee-ccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCC
Q 003764 482 SYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 560 (797)
Q Consensus 482 ~q~~L~~aLg~~~P~~~~f~~-Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~ 560 (797)
+|.+|+++|||..|.|+|+++ ++.+|+|||||+++ .++..||++||.|+||+||++++||+..
T Consensus 265 kQi~ly~aLg~~~P~f~Hlpli~~~~g~KLSKR~~~----------------~~v~~~r~~G~~PeAi~nyla~LGws~~ 328 (535)
T PLN02627 265 RQALIYKALGFPMPRFAHVSLILAPDRSKLSKRHGA----------------TSVGQFREMGYLPDAMVNYLALLGWNDG 328 (535)
T ss_pred HHHHHHHHcCCCCCeEEEccceeCCCCCccccccCC----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCC
Confidence 999999999999999999887 58899999999986 5799999999999999999999999976
Q ss_pred CccccHhhHHHHHHHhhhccCCceeeEeccceEEEEc------CCCCceeeeccccC
Q 003764 561 DSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKRW 611 (797)
Q Consensus 561 ~~~~~~~~Le~~ir~~~~~~~~R~~av~dp~kl~i~n------~~~~~~~~~~~p~~ 611 (797)
+. -++..++++++.|....+++++++||+.||.|.| ++.+++.....|++
T Consensus 329 ~~-~e~~~~~eli~~F~l~~v~~s~~~fD~~KL~wlN~~yir~l~~~el~~~~~p~l 384 (535)
T PLN02627 329 TE-NEIFTLEELVEKFSIDRINKSGAVFDSTKLKWMNGQHLRLLPEEELVKLVGERW 384 (535)
T ss_pred CC-CCcCCHHHHHHhCCHhhCCCcccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 42 2466789999999999999999999999999887 55554444444444
No 15
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.7e-74 Score=638.15 Aligned_cols=289 Identities=21% Similarity=0.286 Sum_probs=263.7
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCcccCCchhHHHHHH
Q 003764 276 LTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYE 355 (797)
Q Consensus 276 ~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~~~~qSd~~~~~ye 355 (797)
+|||||||||+|||||||+||+||+|||++||+|+|||||||++|+.++++++|+++|+|||++||++++||+|++.|++
T Consensus 1 ~~RFAPSPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~~R~~~e~~~~I~~~L~WlGl~wDe~y~QSeR~~~Y~~ 80 (433)
T PRK12410 1 MLRFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFGISWDKLVYQSENLKFHRQ 80 (433)
T ss_pred CCccCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCChHHHHHHHHHHHHcCCCCCCCeehhccHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccccCCCCHHHHHHHhc--------cCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCC
Q 003764 356 LAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFN 427 (797)
Q Consensus 356 ~a~~LI~~G~AY~C~cs~eel~~~r~--------~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~ 427 (797)
+|++||++|+||+|+||++++++.|+ ++|++.||+++.+|.+ . ..+++++|+|++ .+...
T Consensus 81 ~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~~------~----~g~~~~iR~k~p--~~~~~ 148 (433)
T PRK12410 81 MAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEVL------N----CNKPFVVRLKKP--NHTMS 148 (433)
T ss_pred HHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHHH------h----cCCCeEEEEEcC--CCcee
Confidence 99999999999999999999988764 4799999999987641 1 234799999987 36778
Q ss_pred cCccEEEEEecCCCCCCCCcc-----cccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCC-ceeeee
Q 003764 428 MYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQP-YVWEYS 501 (797)
Q Consensus 428 ~~D~V~~r~~~~~h~~~gd~~-----~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P-~~~~f~ 501 (797)
+.|.|.|++.+.++ +.++| +|+||||||||||||+|||||||||+||++|||+|.+|+++|||..| .+.|++
T Consensus 149 f~D~v~G~i~~~~~--~~~D~Vi~R~Dg~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~Ly~aLg~~~pp~f~Hlp 226 (433)
T PRK12410 149 FTDAIKGEVSFEPD--EIDSFVILRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNKEITYAHLP 226 (433)
T ss_pred eeeccceeEEeccc--cCCCeEEEcCCCCccccccchhchhhcCCCEEEechhhhhCcHHHHHHHHHcCCCCCCeEEEee
Confidence 89999999987754 33466 47999999999999999999999999999999999999999999864 777887
Q ss_pred -eccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhhhcc
Q 003764 502 -RLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKT 580 (797)
Q Consensus 502 -~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~ 580 (797)
.+|.+|+|||||+++ .+|++||++||.|+||+||++.+||+... ++..+++++..|....
T Consensus 227 li~~~~g~KLSKR~~~----------------~~v~~~r~~G~~PeAi~n~l~~lG~~~~~---e~~~~~eli~~F~~~~ 287 (433)
T PRK12410 227 IILNEEGKKMSKRDNA----------------SSVKWLLEQGFLPSAIANYLILLGNKTPK---EIFTLEEAIEWFDIEK 287 (433)
T ss_pred eeeCCCCCeeecccCh----------------hhHHHHHHCCCCHHHHHHHHHHhCCCCcc---cccCHHHHHHhCCHhh
Confidence 479999999999986 68999999999999999999999998663 5567899999999999
Q ss_pred CCceeeEeccceEEEEc
Q 003764 581 APRTMVVLNPLKVVITN 597 (797)
Q Consensus 581 ~~R~~av~dp~kl~i~n 597 (797)
+++.+++||+.||.|.|
T Consensus 288 i~~~~~~~d~~kL~~~N 304 (433)
T PRK12410 288 ISKSPAKFDLKKLRFIN 304 (433)
T ss_pred CCCccccCCHHHHHHHH
Confidence 99999999999999888
No 16
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=100.00 E-value=3.6e-74 Score=623.20 Aligned_cols=306 Identities=30% Similarity=0.419 Sum_probs=264.7
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCC-cccCCchhHHH
Q 003764 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPF-KITYTSDYFQE 352 (797)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd-~~~~qSd~~~~ 352 (797)
+|||||||||||+|||||||+||+||++||++||+|+|||||||++|+.++|+++|+++|+|||+.|| ++++||+|++.
T Consensus 1 kv~tRFAPsPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~D~~~~~QS~r~~~ 80 (314)
T PF00749_consen 1 KVRTRFAPSPTGYLHIGHARTALLNYLFARKYGGKFILRIEDTDPERCRPEFYDAILEDLRWLGLEWDYGPYYQSDRLEI 80 (314)
T ss_dssp --EEEE---SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETSSTTTCHHHHHHHHHHHHHHHT---STCEEEGGGGHHH
T ss_pred CeeEeeCCCCCCCcccchhHHHHHHHHHHhccCceEEEeccccccccchhhHHHHHHhheeEEEEecCCeEEeHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHHHHHHHHcCccccCCCCHHHHHHHhcc--CCCCCCCCCChHHHhHHH-HHhhcCcccCCceEEEEEecCCCCCCCcC
Q 003764 353 LYELAVELIRRGHAYVDHQTPEEIKEYREK--KMNSPWRDRPIAESLKLF-EDMRNGRIEEGKATLRMKQDMQNDNFNMY 429 (797)
Q Consensus 353 ~ye~a~~LI~~G~AY~C~cs~eel~~~r~~--~~~~~~R~~s~ee~l~~f-e~m~~G~~~~g~~~lR~K~d~~~~~~~~~ 429 (797)
|+++|++|+++|+||+|+||+++|++.|+. +.+++++....+.++.++ ++|+.|....+++++|+|+++... ..++
T Consensus 81 Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~-~~~~ 159 (314)
T PF00749_consen 81 YQEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESP-IAFR 159 (314)
T ss_dssp HHHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCC-EEEE
T ss_pred HHHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccccc-cccc
Confidence 999999999999999999999999999875 566778888888888888 788888888889999999998655 7899
Q ss_pred ccEEEEEecCC---CCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCceeeee-eccC
Q 003764 430 DLIAYRIKFTP---HPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYS-RLNV 505 (797)
Q Consensus 430 D~V~~r~~~~~---h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~~f~-~Ln~ 505 (797)
|+|.|++.+.+ |+..+.+++|+||||||||||||+|||||||||.||++||+.|.||+++||++.|.+.|.+ .+|.
T Consensus 160 D~v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~ 239 (314)
T PF00749_consen 160 DLVRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNE 239 (314)
T ss_dssp ETTTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEET
T ss_pred cCcceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecC
Confidence 99999998776 5555567899999999999999999999999999999999999999999999988887765 5899
Q ss_pred CCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhhhccCCcee
Q 003764 506 SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTM 585 (797)
Q Consensus 506 ~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~ 585 (797)
+|+|||||+++.+| .+..++..|++|+++.+||+.+||+... ..++..++++++.|....+++..
T Consensus 240 ~g~kLSKR~~~~~i--------------~~~~~r~~g~~~~~~l~~L~~lG~~~~~-~~e~~~~~~~~~~f~~~~~~~~~ 304 (314)
T PF00749_consen 240 DGKKLSKRKGAKSI--------------ELGDYREWGDPPEATLNYLARLGWSPEA-IREFFSLDELIKQFDLSKISKSP 304 (314)
T ss_dssp TSSBSSTTCSHHBH--------------HHHHHHHTT-THHHHHHHHHHTTB-HCT-HHCHHHHHHHHHHC-GGGBHSSH
T ss_pred CCcEechhhccccc--------------cccccccCCCCHHHHHHHHHHhcCCcch-hhhhcCHHHHHHHhhHhhccCch
Confidence 99999999998432 3889999999999999999999999653 35677889999999888999999
Q ss_pred eEeccceEEE
Q 003764 586 VVLNPLKVVI 595 (797)
Q Consensus 586 av~dp~kl~i 595 (797)
++||+.||.|
T Consensus 305 ~~fd~~kL~w 314 (314)
T PF00749_consen 305 AVFDRKKLDW 314 (314)
T ss_dssp EEHHHHHHHH
T ss_pred HHhCHHHhCC
Confidence 9999988754
No 17
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=1.1e-72 Score=584.26 Aligned_cols=238 Identities=65% Similarity=1.158 Sum_probs=229.9
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCcccCCchhHHHH
Q 003764 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQEL 353 (797)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~~~~qSd~~~~~ 353 (797)
+|+|||||||||+|||||+|+|++||++||++||+|+||||||||+|+.++|+++|+++|+|||++||++++||+|++.|
T Consensus 1 ~v~~RFAPsPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD~~~~QS~r~~~Y 80 (238)
T cd00807 1 KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYKVTYASDYFDQL 80 (238)
T ss_pred CceEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCcccchHHHHHHHHHHHHcCCCCCCceecccCHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccEE
Q 003764 354 YELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIA 433 (797)
Q Consensus 354 ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~ 433 (797)
++++++|+++|+||+
T Consensus 81 ~~~~~~L~~~g~aY~----------------------------------------------------------------- 95 (238)
T cd00807 81 YEYAEQLIKKGKAYV----------------------------------------------------------------- 95 (238)
T ss_pred HHHHHHHHHcCCeec-----------------------------------------------------------------
Confidence 999999999999998
Q ss_pred EEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCceeeeeeccCCCceeccc
Q 003764 434 YRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKR 513 (797)
Q Consensus 434 ~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~~f~~Ln~~g~kLSKR 513 (797)
|++.|++|+++|||||||||||++|||||||||+||++||++|.||+++||++.|.+|+|+|+|.+|+|||||
T Consensus 96 -------~~~~~~~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~~~~~~hln~~g~kLSKR 168 (238)
T cd00807 96 -------HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFSRLNLTYTVMSKR 168 (238)
T ss_pred -------CCCCCCCEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHcCCCCCceeEEEEECCCCCCccCc
Confidence 1123346667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhhhccCCc
Q 003764 514 KLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPR 583 (797)
Q Consensus 514 k~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R 583 (797)
+++++|++|.|.||||||++|+.+|+++|++|+||++||+.+|||.++..+++++|++++++.+++.+||
T Consensus 169 ~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr~~id~~~~r 238 (238)
T cd00807 169 KLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVRKDLNPTAPR 238 (238)
T ss_pred CchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987
No 18
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.2e-72 Score=624.41 Aligned_cols=294 Identities=27% Similarity=0.332 Sum_probs=261.6
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCcccCCchhHHHH
Q 003764 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQEL 353 (797)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~~~~qSd~~~~~ 353 (797)
+|||||||||||+||||||||||+||++||++||+|+|||||||++|..+++.+.|+++|+|||+.||+.++||++++.|
T Consensus 2 ~vr~RFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~Rs~~~~~~~I~e~L~wLGI~~De~y~QSer~~~y 81 (445)
T PRK12558 2 TVITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDLKWLGINWDRTFRQSDRFDRY 81 (445)
T ss_pred ceeEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccCCcccchHHHHHHHHHHHHHcCCCCCccccHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCccccCCCCHHHHHHHhc--------cCCCCCCCCCChHHHhHHHHHhhcCcccCC-ceEEEEEecCCCC
Q 003764 354 YELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQDMQND 424 (797)
Q Consensus 354 ye~a~~LI~~G~AY~C~cs~eel~~~r~--------~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g-~~~lR~K~d~~~~ 424 (797)
.+++++|+++|+||+|+||++++++.|. ++|++.||+++.++.... ...| ++++|+|++ .+
T Consensus 82 ~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~--------~~~g~~~~iR~k~~--~~ 151 (445)
T PRK12558 82 DEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAAL--------EAEGRKPHWRFKLD--DE 151 (445)
T ss_pred HHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhH--------HhcCCCceEEEecC--CC
Confidence 9999999999999999999999987764 468999999998875432 1223 589999973 34
Q ss_pred CCCcCccEEEEEecCCCCCCCCcc-----cccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCceee
Q 003764 425 NFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWE 499 (797)
Q Consensus 425 ~~~~~D~V~~r~~~~~h~~~gd~~-----~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~~ 499 (797)
...+.|.|.+.+.+.... .+ +| +|+||||||||||||+|||||||||+||++|||+|.||+++|||..|.|+|
T Consensus 152 ~~~~~D~i~G~~~~~~~~-~~-D~Vi~R~dg~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg~~~P~f~H 229 (445)
T PRK12558 152 PISWDDLIRGEQSIDAAS-LS-DPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALGAKPPVFAH 229 (445)
T ss_pred ceEEEEEeeeEeeccccc-CC-CeEEEecCCCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhCCCCCeEEE
Confidence 455667777766554432 22 33 479999999999999999999999999999999999999999999998888
Q ss_pred eee-ccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhhh
Q 003764 500 YSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELN 578 (797)
Q Consensus 500 f~~-Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~ 578 (797)
+++ ++.+|+|||||+++ .+|.+||++||+|+||+||++.+||+.++. ++..++++++.|..
T Consensus 230 ~pli~~~~g~KLSKR~g~----------------~sv~~~r~~G~~Peai~n~la~lG~s~~~~--e~~~~~eli~~F~l 291 (445)
T PRK12558 230 LSLLTGADGKGLSKRLGG----------------LSIRSLREDGIEPMAIASLLARLGTSDPVE--PYTSMEELAESFDL 291 (445)
T ss_pred cccccCCCcccccccCCC----------------cCHHHHHHCCCCHHHHHHHHHHHcCCCCCc--ccCCHHHHHHhCCH
Confidence 877 47899999999986 689999999999999999999999998754 45688999999999
Q ss_pred ccCCceeeEeccceEEEEc
Q 003764 579 KTAPRTMVVLNPLKVVITN 597 (797)
Q Consensus 579 ~~~~R~~av~dp~kl~i~n 597 (797)
.++++++++||+.||.|.|
T Consensus 292 ~~~~~~~~~fd~~KL~w~N 310 (445)
T PRK12558 292 SSFSRAPAKFDPEDLERLN 310 (445)
T ss_pred hhCCCccccCCHHHHHHHH
Confidence 9999999999999999888
No 19
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-71 Score=599.95 Aligned_cols=298 Identities=21% Similarity=0.319 Sum_probs=270.1
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCc---------c
Q 003764 273 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---------I 343 (797)
Q Consensus 273 g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~---------~ 343 (797)
-.|||||||||||+||+|++|||++||+|||++||+|||||||||.+|..+++.+.|.++|+|+|+.||| +
T Consensus 32 ~~VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDTDq~R~v~gs~e~i~~~L~w~nl~~DEgP~~gG~~GP 111 (524)
T KOG1149|consen 32 ACVRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDTDQKRLIRGSEEAIYEDLKWANLDWDEGPGVGGPFGP 111 (524)
T ss_pred ceeEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEeccccccccccchHHHHHHHHHhcCCCcccCCCcCCCCCc
Confidence 3499999999999999999999999999999999999999999999999999999999999999999996 5
Q ss_pred cCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhc--------cCCCCCCCCCChHHHhHHHHHhhcCcccCC-ceE
Q 003764 344 TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KAT 414 (797)
Q Consensus 344 ~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~--------~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g-~~~ 414 (797)
|.||+|.+.|.++|+.|++.|+||+||||.+++...|. ++|+..||+++.+|... + .+.| ++|
T Consensus 112 Y~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~kca~ls~~ei~~----~----lakg~pf~ 183 (524)
T KOG1149|consen 112 YEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDRKCANLSDAEIKQ----K----LAKGTPFT 183 (524)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccchhcccCHHHHHH----H----HhcCCCee
Confidence 89999999999999999999999999999999888765 57999999999987543 2 2234 699
Q ss_pred EEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc----cccccccccchhhhccCCccEEecCcccccchhHHHHHHHHh
Q 003764 415 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 490 (797)
Q Consensus 415 lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~----~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aL 490 (797)
+|||.+- .++.+.|+|.+++........||.- +|+||||||||||||+|||||||||+||++||++|..||+||
T Consensus 184 iRFrl~~--~~~~f~DLvyG~v~~~~d~~~gD~VvmKSDgfPTYHfAnVVDDh~M~IsHViRGeEWlpST~KH~lLYkAf 261 (524)
T KOG1149|consen 184 IRFRLPK--ESPPFTDLVYGKVNHNVDSNEGDPVVMKSDGFPTYHFANVVDDHLMGISHVIRGEEWLPSTLKHILLYKAF 261 (524)
T ss_pred EEEecCC--CCCChhhhhhhhhhccccccCCCcEEEecCCCcceeeeeeecchhcchhheeecchhccccHHHHHHHHHh
Confidence 9999864 3788999999999777666566643 799999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeee-ccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhH
Q 003764 491 GLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRL 569 (797)
Q Consensus 491 g~~~P~~~~f~~-Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~L 569 (797)
||.+|.+.|.+. +|.+|+|||||++. .++..|+++||.|+|+.|||+.+||+....+ +...|
T Consensus 262 gW~pPkFaHlpLl~n~d~sKLSKRqgD----------------~~vs~~~e~G~LPeallN~ial~Gwg~~~~~-~f~sl 324 (524)
T KOG1149|consen 262 GWQPPKFAHLPLLLNPDGSKLSKRQGD----------------ASVSHYREQGYLPEALLNYIALLGWGFRTEN-EFFSL 324 (524)
T ss_pred CCCCCceeeeeeeecCCcchhhhhcCc----------------chHHHHHHcCCChHHHHHHHHHcCCCccccc-ccccH
Confidence 999996555554 58999999999997 5899999999999999999999999988664 67889
Q ss_pred HHHHHHhhhccCCceeeEeccceEEEEc
Q 003764 570 EYHIREELNKTAPRTMVVLNPLKVVITN 597 (797)
Q Consensus 570 e~~ir~~~~~~~~R~~av~dp~kl~i~n 597 (797)
++++.+|...++.+..+++|+.||.+.|
T Consensus 325 ~eLieqF~i~~ltk~~a~ld~ekL~~~N 352 (524)
T KOG1149|consen 325 EELIEQFSIERLTKSNAILDSEKLRFLN 352 (524)
T ss_pred HHHHHHhchhhhcccccccCHHHHHHHH
Confidence 9999999999999999999999998877
No 20
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=100.00 E-value=1.5e-69 Score=579.68 Aligned_cols=281 Identities=19% Similarity=0.207 Sum_probs=239.7
Q ss_pred CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCc-ccCCchhH
Q 003764 272 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYF 350 (797)
Q Consensus 272 ~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~-~~~qSd~~ 350 (797)
..+|||||||||||+|||||+|+||+||++||++||+|+|||||||++|+.++|++.|+++|+|||++||+ +++||+|+
T Consensus 3 ~~~v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~QS~r~ 82 (299)
T PRK05710 3 MTPYIGRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWLGLHWDGPVLYQSQRH 82 (299)
T ss_pred CCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCCccchHHHHHHHHHHHHCCCCCCCCceEeeccH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999995 99999999
Q ss_pred HHHHHHHHHHHHcCccccCCCCHHHHHHHh----c--cCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCC
Q 003764 351 QELYELAVELIRRGHAYVDHQTPEEIKEYR----E--KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQND 424 (797)
Q Consensus 351 ~~~ye~a~~LI~~G~AY~C~cs~eel~~~r----~--~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~ 424 (797)
+.|++++++|+++|+||+|+||+++|++.| + +.|+++||+++.+++ .+++||+|++ .+
T Consensus 83 ~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~--------------~~~~iRlk~~--~~ 146 (299)
T PRK05710 83 DAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPR--------------NPPAWRLRVP--DA 146 (299)
T ss_pred HHHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCcccc--------------CCceEEEEcC--CC
Confidence 999999999999999999999999998776 1 469999999887542 1579999987 23
Q ss_pred CCCcCccEEEEEecCCCCCCCCcc-----cccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCceee
Q 003764 425 NFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWE 499 (797)
Q Consensus 425 ~~~~~D~V~~r~~~~~h~~~gd~~-----~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~~ 499 (797)
...+.|.+.+.+...+....+ +| +|+||||||||||||+|||||||||+||+++|++|.||+++|||..|.|.|
T Consensus 147 ~~~~~D~~~G~~~~~~~~~~~-D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~y~H 225 (299)
T PRK05710 147 VIAFDDRLQGRQHQDLALAVG-DFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLGLPTPRYLH 225 (299)
T ss_pred ceEEEEecceeEeeCCCCCCC-CEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcCCCCCeEEE
Confidence 334445555444333332222 22 369999999999999999999999999999999999999999999999999
Q ss_pred eeec-cCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhH--HHHHHHh
Q 003764 500 YSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRL--EYHIREE 576 (797)
Q Consensus 500 f~~L-n~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~L--e~~ir~~ 576 (797)
++.+ |.+|+|||||+++. +|.. .|+.|+ |.+|++.+||+.... .+...+ ++++.+|
T Consensus 226 ~pll~~~~g~kLSKr~~~~----------------~i~~---~g~~p~-l~~~l~~lG~~~~~~-~~~~~~~~~~~i~~f 284 (299)
T PRK05710 226 LPLVLNADGQKLSKQNGAP----------------ALDA---AGPLPV-LAAALRFLGQPPPAA-DASVEELLAQAVAHW 284 (299)
T ss_pred eecccCCCCCcccccCCcc----------------chhh---cCcCHH-HHHHHHHcCCCCCcc-ccccccCHHHHHHhC
Confidence 9874 99999999999874 3444 799999 999999999987633 122222 7899999
Q ss_pred hhccCCceeeEecc
Q 003764 577 LNKTAPRTMVVLNP 590 (797)
Q Consensus 577 ~~~~~~R~~av~dp 590 (797)
....+++..+++.+
T Consensus 285 ~~~~~~~~~~~~~~ 298 (299)
T PRK05710 285 DLTRLPRQAEINPA 298 (299)
T ss_pred CHhhCCcCCccCCC
Confidence 98889988887754
No 21
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=2.2e-69 Score=561.46 Aligned_cols=238 Identities=33% Similarity=0.563 Sum_probs=229.5
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchh--chHHHHHHHHHHHHHcCCCCCcccCCchhHH
Q 003764 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA--EKKEYIDHIEEIVQWMGWEPFKITYTSDYFQ 351 (797)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~r--e~~e~~~~I~e~L~wLGl~pd~~~~qSd~~~ 351 (797)
+|+|||||||||+|||||+|+|++||++||+++|+|+|||||||++| +.+++++.|+++|+|||+.||++++||+|++
T Consensus 1 ~v~~RfaPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~~~i~~dL~wLGl~~d~~~~qS~r~~ 80 (240)
T cd09287 1 KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPEDLEWLGVKWDEVVIASDRIE 80 (240)
T ss_pred CceEeCCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcccchHHHHHHHHHHHHHcCCCCCCccchhccHH
Confidence 48999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCcc
Q 003764 352 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 431 (797)
Q Consensus 352 ~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~ 431 (797)
.|++++++|+++|+||+
T Consensus 81 ~y~~~~~~Li~~G~aY~--------------------------------------------------------------- 97 (240)
T cd09287 81 LYYEYARKLIEMGGAYV--------------------------------------------------------------- 97 (240)
T ss_pred HHHHHHHHHHHcCCccc---------------------------------------------------------------
Confidence 99999999999999997
Q ss_pred EEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCceeeeeeccCCCceec
Q 003764 432 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMS 511 (797)
Q Consensus 432 V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~~f~~Ln~~g~kLS 511 (797)
|++.|++|+++|||||||||||++|||||||||+||+++|++|.||+++||+..|.|+|+++++.+|+|||
T Consensus 98 ---------~~~~~~~~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~~~Lg~~~P~~~H~pll~~~~~kLS 168 (240)
T cd09287 98 ---------HPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWGRLKIEGGKLS 168 (240)
T ss_pred ---------CcccCCcEEEEEccccceeeeccccCCCeEEechhhhhCCHHHHHHHHHcCCCCCcEEeeeeecCCCCeec
Confidence 12234567778999999999999999999999999999999999999999999999999999998999999
Q ss_pred ccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhhhccCCc
Q 003764 512 KRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPR 583 (797)
Q Consensus 512 KRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R 583 (797)
||+++++|++|.|.||||||+.|+++||++|++|+||++|+..+||+.++..+++++|++++|+.+++.++|
T Consensus 169 KR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r~~l~~~~~r 240 (240)
T cd09287 169 TSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINRKLIDPRANR 240 (240)
T ss_pred cccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987
No 22
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.8e-69 Score=612.67 Aligned_cols=298 Identities=25% Similarity=0.334 Sum_probs=266.2
Q ss_pred CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCcc--------
Q 003764 272 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKI-------- 343 (797)
Q Consensus 272 ~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~~-------- 343 (797)
.++|||||||||||+|||||+||||+||+|||++||+|||||||||++|+.++++++|+++|+|||++||+.
T Consensus 2 ~~~v~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~~R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gp 81 (476)
T PRK01406 2 MMKVRTRFAPSPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEGLKWLGLDWDEGPDGGPYGP 81 (476)
T ss_pred CCceeEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCCCChHHHHHHHHHHHHCCCCCCCCCccCCCCc
Confidence 356999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred cCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhc--------cCCCCCCCCCChHHHhHHHHHhhcCcccCCceEE
Q 003764 344 TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 415 (797)
Q Consensus 344 ~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~--------~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~l 415 (797)
|+||+|++.|+++|++|+++|+||+|+||++++.+.|. +.|+++||+++.+|... .+.+|. ++++
T Consensus 82 y~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~---~~~~g~----~~~i 154 (476)
T PRK01406 82 YRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAA---RLAAGE----PPVI 154 (476)
T ss_pred eehhcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHH---HHhCCC----CeeE
Confidence 99999999999999999999999999999999988764 46999999999987653 233332 6899
Q ss_pred EEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-----cccccccccchhhhccCCccEEecCcccccchhHHHHHHHHh
Q 003764 416 RMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 490 (797)
Q Consensus 416 R~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~-----~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aL 490 (797)
|+|++. .+...+.|.|.+++.+.... .+ ++ +|+||||||+|||||+|+|||||||+||+.++++|.+++++|
T Consensus 155 R~k~p~-~~~~~~~D~i~G~~~~~~~~-~~-D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~al 231 (476)
T PRK01406 155 RFKVPD-EGEVVFDDLVRGEIEFPNSE-LD-DFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEAL 231 (476)
T ss_pred EEEcCC-CCceEEEEeccceEEecccc-CC-CcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHh
Confidence 999874 34566778888877655433 23 33 579999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeee-ccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhH
Q 003764 491 GLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRL 569 (797)
Q Consensus 491 g~~~P~~~~f~~-Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~L 569 (797)
|+..|.+.|+++ +|.+|.|||||++. .+|.+|+++||.|+|+.||++.+||+.... +...+
T Consensus 232 G~~~p~~~H~pli~~~~g~klSKR~g~----------------~~l~~l~~~G~~p~Ai~n~l~~lG~s~~~~--e~~~~ 293 (476)
T PRK01406 232 GWEVPVFAHLPLILGPDGKKLSKRHGA----------------TSVEQYRDMGYLPEALLNYLALLGWSHGDQ--EIFSL 293 (476)
T ss_pred CCCCCeEEEeeeeeCCCCCcccCcCCc----------------cCHHHHHHCCCCHHHHHHHHHHhCCCCCcc--ccCCH
Confidence 999998888776 58999999999985 589999999999999999999999996543 55678
Q ss_pred HHHHHHhhhccCCceeeEeccceEEEEc
Q 003764 570 EYHIREELNKTAPRTMVVLNPLKVVITN 597 (797)
Q Consensus 570 e~~ir~~~~~~~~R~~av~dp~kl~i~n 597 (797)
+++++.|+...+++.+++||+.||.|.|
T Consensus 294 ~~~i~~f~l~~~~~s~~~fd~~kL~~~N 321 (476)
T PRK01406 294 EELIELFDLERVSKSPARFDIKKLDWLN 321 (476)
T ss_pred HHHHHhcChhhCCCCCccccHHHHHHHH
Confidence 9999999999999999999999999888
No 23
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.8e-69 Score=611.51 Aligned_cols=308 Identities=22% Similarity=0.315 Sum_probs=268.4
Q ss_pred CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCC-cccCCchhH
Q 003764 272 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPF-KITYTSDYF 350 (797)
Q Consensus 272 ~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd-~~~~qSd~~ 350 (797)
+.+|||||||||||+|||||||+||+||+|||++||+|+|||||||++|+.++++++|+++|+|||++|| ++|+||+|+
T Consensus 2 ~~~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~i~~~L~WLGl~wDe~py~QSeR~ 81 (513)
T PRK14895 2 NNNVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLKWLGLDWNGEVIFQSKRN 81 (513)
T ss_pred CCCeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCCCceeEeCcH
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999 589999999
Q ss_pred HHHHHHHHHHHHcCccccCCCCHHHHHHHhc--------cCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCC
Q 003764 351 QELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ 422 (797)
Q Consensus 351 ~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~--------~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~ 422 (797)
+.|+++|++|+++|+||+|+||++++++.|. ++|++.||+++.++. ...+++++|||++.
T Consensus 82 ~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~-----------~~~~~~~iR~k~p~- 149 (513)
T PRK14895 82 NLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIY-----------PTDIKPVIRLKTPR- 149 (513)
T ss_pred HHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhh-----------hcCCCeeEEEEcCC-
Confidence 9999999999999999999999999998774 469999998876531 12347899999875
Q ss_pred CCCCCcCccEEEEEecCCCCCCCCcc-----cccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCce
Q 003764 423 NDNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYV 497 (797)
Q Consensus 423 ~~~~~~~D~V~~r~~~~~h~~~gd~~-----~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~ 497 (797)
.+...+.|.|.+.+.+.... .+ ++ +|.||||||++||||+|||||||||+||+.|+++|.+|+++||+..|.+
T Consensus 150 ~~~~~~~D~v~G~~~~~~~~-~~-D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG~~~p~~ 227 (513)
T PRK14895 150 EGSITIHDTLQGEVVIENSH-ID-DMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFGYAVPSM 227 (513)
T ss_pred CCceEEEeecccceeccccc-CC-CcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcCCCCCeE
Confidence 33455666666666544332 22 23 4799999999999999999999999999999999999999999999998
Q ss_pred eeeeec-cCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHh
Q 003764 498 WEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREE 576 (797)
Q Consensus 498 ~~f~~L-n~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~ 576 (797)
.|++.+ |.+|.|||||+++ .+|++||++||.|+||+||++.|||+..+. ++..++++++.|
T Consensus 228 ~H~plv~~~~g~KLSKR~g~----------------~~i~~~r~~G~~Peai~n~la~LG~s~~~~--e~~~~~el~~~F 289 (513)
T PRK14895 228 THIPLIHGADGAKLSKRHGA----------------LGIEAYKDMGYLPESLCNYLLRLGWSHGDD--EIISMTQAIDWF 289 (513)
T ss_pred EEEEeEEcCCCCccccccCc----------------hhHHHHHHCCCCHHHHHHHHHHhCCCCCCc--CCCCHHHHHhhC
Confidence 888875 6999999999987 579999999999999999999999997643 567889999999
Q ss_pred hhccCCceeeEeccceEEEEc------CCCCceeeeccccC
Q 003764 577 LNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKRW 611 (797)
Q Consensus 577 ~~~~~~R~~av~dp~kl~i~n------~~~~~~~~~~~p~~ 611 (797)
....+++++++||+.||.|.| ++.+++.....|++
T Consensus 290 ~~~~v~~s~~~FD~~KL~wlN~~yi~~l~~~el~~~~~~~l 330 (513)
T PRK14895 290 NLDSLGKSPSKLDFAKMNSLNAHYLRMLDNDSLTSKTVEIL 330 (513)
T ss_pred CHHhCcCCcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999888 55554444445554
No 24
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=100.00 E-value=4.1e-68 Score=602.75 Aligned_cols=297 Identities=23% Similarity=0.302 Sum_probs=267.2
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCC-cccCCchhHHH
Q 003764 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPF-KITYTSDYFQE 352 (797)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd-~~~~qSd~~~~ 352 (797)
+|||||||||||+|||||+|+||+||+|||++||+|+|||||||++|+.++++++|+++|+|||++|| ++++||+|++.
T Consensus 1 ~v~~RfAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~de~~~~QS~r~~~ 80 (470)
T TIGR00464 1 KVRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDTDLERNIEEAEEAILEGLKWLGISWDEGPYYQSQRLDI 80 (470)
T ss_pred CceEeeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCccCChHHHHHHHHHHHHCCCCCCCCeeehhCCHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999 68999999999
Q ss_pred HHHHHHHHHHcCccccCCCCHHHHHHHhc--------cCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCC
Q 003764 353 LYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQND 424 (797)
Q Consensus 353 ~ye~a~~LI~~G~AY~C~cs~eel~~~r~--------~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~ 424 (797)
|+++|++||++|+||+|+||++++++.|. ++|+++||+++.+++...++ ..++++||+|+|. ..
T Consensus 81 y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~-------~g~~~~iR~k~~~-~~ 152 (470)
T TIGR00464 81 YKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLA-------KGIPPVVRFKIPQ-EA 152 (470)
T ss_pred HHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHh-------cCCCceEEEEcCC-CC
Confidence 99999999999999999999999987763 47999999999987654322 2347999999985 34
Q ss_pred CCCcCccEEEEEecCCCCCCCCcc-----cccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCceee
Q 003764 425 NFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWE 499 (797)
Q Consensus 425 ~~~~~D~V~~r~~~~~h~~~gd~~-----~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~~ 499 (797)
...+.|.|.|++.+.++.. + ++ +|+||||||++|||++|||||||||.||+.++++|.+|+++||+..|.+.|
T Consensus 153 ~~~~~D~~~G~~~~~~~~~-~-D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H 230 (470)
T TIGR00464 153 VVSFNDQVRGEITFQNSEL-D-DFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALGWKIPVFAH 230 (470)
T ss_pred ceeEEecccceEEecCccC-C-CeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcCCCCCeEEE
Confidence 5778999999988776442 3 34 589999999999999999999999999999999999999999999998888
Q ss_pred eee-ccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhhh
Q 003764 500 YSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELN 578 (797)
Q Consensus 500 f~~-Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~ 578 (797)
++. ++.+|+|||||++. .+|++|+++||.|+|+.+|++.+||+.... -+...++++++.|+.
T Consensus 231 ~p~l~~~~g~kLSKR~g~----------------~~l~~l~~~g~~p~a~~~~~~~lG~~~~~~-~e~~~~~~~i~~f~l 293 (470)
T TIGR00464 231 LPMILDEDGKKLSKRDGA----------------TSIMQFKEQGYLPEALINYLALLGWSPPDD-QEFFSLEELIEIFSL 293 (470)
T ss_pred EeeeecCCCccccccCCC----------------ccHHHHHHCCCCHHHHHHHHHHcCCCCCCc-cccCCHHHHHHhcCc
Confidence 887 58899999999984 689999999999999999999999987643 234567899999999
Q ss_pred ccCCceeeEeccceEEEEc
Q 003764 579 KTAPRTMVVLNPLKVVITN 597 (797)
Q Consensus 579 ~~~~R~~av~dp~kl~i~n 597 (797)
..+++..++||..|+.|.|
T Consensus 294 ~~~~~~~~~fd~~kL~~~N 312 (470)
T TIGR00464 294 NRVSKSPAKFDWKKLQWLN 312 (470)
T ss_pred ccCCCCCCeecHHHHHHHH
Confidence 9999999999999999887
No 25
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=100.00 E-value=2.3e-67 Score=557.14 Aligned_cols=260 Identities=19% Similarity=0.193 Sum_probs=223.9
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCc-ccCCchhHHHH
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQEL 353 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~-~~~qSd~~~~~ 353 (797)
++|||||||||+|||||+|+||+||++||++||+|+|||||||++|+.++|+++|+++|+|||++||+ +++||+|++.|
T Consensus 1 ~~~RFAPSPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~~R~~~~~~~~I~~dL~wLGl~wDe~~~~QS~r~~~Y 80 (272)
T TIGR03838 1 YRGRFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYGLHWDGEVVYQSQRHALY 80 (272)
T ss_pred CeeeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeeeeCCHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999996 57999999999
Q ss_pred HHHHHHHHHcCccccCCCCHHHHHHHh-c--cCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCc
Q 003764 354 YELAVELIRRGHAYVDHQTPEEIKEYR-E--KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 430 (797)
Q Consensus 354 ye~a~~LI~~G~AY~C~cs~eel~~~r-~--~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~D 430 (797)
+++|++|+++|+||+|+||++|+++.| + +.|++.||+ +.. ...+++++||+|++. .+..+.|
T Consensus 81 ~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~-~~~------------~~~~~~~~~Rlk~~~--~~~~~~D 145 (272)
T TIGR03838 81 QAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRN-GLL------------GRPARPAAWRLRVPD--GVIAFDD 145 (272)
T ss_pred HHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhc-ccc------------cccCCCceEEEecCC--CCceEEE
Confidence 999999999999999999999999884 2 468888997 320 123457899999874 5678999
Q ss_pred cEEEEEecCCCCCCCCccc-----ccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCceeeeee-cc
Q 003764 431 LIAYRIKFTPHPHAGDKWC-----IYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSR-LN 504 (797)
Q Consensus 431 ~V~~r~~~~~h~~~gd~~~-----~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~~f~~-Ln 504 (797)
.+.+++.+.+ +...++|+ |+||||||||||||+|||||||||+||++||++|.||+++|||..|.|.|+++ +|
T Consensus 146 ~~~g~~~~~~-~~~~~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~ 224 (272)
T TIGR03838 146 RLQGPQQQDL-AAAVGDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLPLVVN 224 (272)
T ss_pred eeeeEEEecC-cccCCCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhCCCCCeEEechhhhC
Confidence 9999997542 33445674 59999999999999999999999999999999999999999999999888887 49
Q ss_pred CCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHH
Q 003764 505 VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 571 (797)
Q Consensus 505 ~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~ 571 (797)
.+|+|||||+++..|+++ + +++++.+|+..+||+.... .+...+++
T Consensus 225 ~~g~kLSKR~~~~~i~~~------~--------------~~~~~~~~l~~lG~~~~~~-~~~~~~~~ 270 (272)
T TIGR03838 225 ADGEKLSKQNGAPALDLS------H--------------PLPALLAALRFLGLPPPPE-LAAASPAE 270 (272)
T ss_pred CCCCeeeccCCccchhcC------C--------------cHHHHHHHHHHcCCCCCcc-cccCCHHH
Confidence 999999999998766542 2 3567888888888876532 23444444
No 26
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=100.00 E-value=4.8e-62 Score=504.56 Aligned_cols=222 Identities=36% Similarity=0.551 Sum_probs=209.7
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCc-ccCCchhHHH
Q 003764 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQE 352 (797)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~-~~~qSd~~~~ 352 (797)
+|+|||||||||+|||||+|+|++||++||++||+|+|||||||++|+.++|+++|+++|+|||++||+ +++||+|++.
T Consensus 1 ~v~~RFAPsPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~~~~~QS~r~~~ 80 (230)
T cd00418 1 TVVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDEGPYRQSDRFDL 80 (230)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeehhcCHHH
Confidence 379999999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccE
Q 003764 353 LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI 432 (797)
Q Consensus 353 ~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V 432 (797)
|++++++|+++|
T Consensus 81 y~~~~~~L~~~g-------------------------------------------------------------------- 92 (230)
T cd00418 81 YRAYAEELIKKG-------------------------------------------------------------------- 92 (230)
T ss_pred HHHHHHHHHHcC--------------------------------------------------------------------
Confidence 999999999999
Q ss_pred EEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCceeeeeec-cCCCceec
Q 003764 433 AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMS 511 (797)
Q Consensus 433 ~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~~f~~L-n~~g~kLS 511 (797)
|+|||||||||||++|||||||||+||++||++|.||+++||++.|.|+|++++ +.+|+|||
T Consensus 93 -----------------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg~~~P~~~H~pll~~~~g~KLS 155 (230)
T cd00418 93 -----------------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDGTKLS 155 (230)
T ss_pred -----------------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcCCCCCeEEEeeeeeCCCCCCcc
Confidence 489999999999999999999999999999999999999999999999999986 66789999
Q ss_pred ccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhhhccCCceeeEeccc
Q 003764 512 KRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPL 591 (797)
Q Consensus 512 KRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~dp~ 591 (797)
||+++ .||+++|++|++|+||++|++.+||+.... -++..++++++.|....+++..++||+.
T Consensus 156 Kr~~~----------------~~i~~~r~~G~~p~ai~~~l~~lG~~~~~~-~~~~~~~~li~~f~~~~~~~~~~~~d~~ 218 (230)
T cd00418 156 KRKLN----------------TTLRALRRRGYLPEALRNYLALIGWSKPDG-HELFTLEEMIAAFSVERVNSADATFDWA 218 (230)
T ss_pred CcCCC----------------cCHHHHHHCCCcHHHHHHHHHHcCCCCCCC-ccccCHHHHHHhcCHhhCCCCCcccCHH
Confidence 99986 689999999999999999999999987543 2445677899999999999999999999
Q ss_pred eEEEEc
Q 003764 592 KVVITN 597 (797)
Q Consensus 592 kl~i~n 597 (797)
||.+.|
T Consensus 219 kL~~~N 224 (230)
T cd00418 219 KLEWLN 224 (230)
T ss_pred HHHHHH
Confidence 998776
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=4.3e-58 Score=478.28 Aligned_cols=223 Identities=26% Similarity=0.387 Sum_probs=210.5
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCc---------cc
Q 003764 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---------IT 344 (797)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~---------~~ 344 (797)
+|+|||||||||+|||||+|+|++||++||++||+|+|||||||++|+.+++++.|+++|+|||++||+ ++
T Consensus 1 ~v~~RfAPsPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~ 80 (239)
T cd00808 1 KVRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPY 80 (239)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCE
Confidence 479999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred CCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCC
Q 003764 345 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQND 424 (797)
Q Consensus 345 ~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~ 424 (797)
+||+|++.|++++++|+++|
T Consensus 81 ~QS~r~~~y~~~~~~L~~~g------------------------------------------------------------ 100 (239)
T cd00808 81 RQSERLEIYRKYAEKLLEKG------------------------------------------------------------ 100 (239)
T ss_pred eeeCCHHHHHHHHHHHHHcC------------------------------------------------------------
Confidence 99999999999999999988
Q ss_pred CCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCceeeeeec-
Q 003764 425 NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL- 503 (797)
Q Consensus 425 ~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~~f~~L- 503 (797)
+|+|||+||+||||++|||||||||+||+.++++|.||+++||++.|.++|++++
T Consensus 101 ------------------------dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~~aLg~~~p~~~h~pll~ 156 (239)
T cd00808 101 ------------------------DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGWEPPKFAHLPLIL 156 (239)
T ss_pred ------------------------CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHHHHcCCCCCceEeecccc
Confidence 2589999999999999999999999999999999999999999999999999985
Q ss_pred cCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhhhccCCc
Q 003764 504 NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPR 583 (797)
Q Consensus 504 n~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R 583 (797)
|.+|.|||||+++ .||++||++|++|+||++|++.+|++..+.. ....+++++++|....+++
T Consensus 157 ~~~g~KLSKR~~~----------------~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~~-~~~~~~~l~~~f~~~~~~~ 219 (239)
T cd00808 157 NPDGKKLSKRKGD----------------TSISDYREEGYLPEALLNYLALLGWSPPDGE-EFFTLEELIELFDLERVSK 219 (239)
T ss_pred CCCCCcccCCCCC----------------ccHHHHHHCCCCHHHHHHHHHHcCCCCCCCC-CcCCHHHHHhcCCHhhCCc
Confidence 9999999999987 6999999999999999999999999877532 4566788999999999999
Q ss_pred eeeEeccceEEEEc
Q 003764 584 TMVVLNPLKVVITN 597 (797)
Q Consensus 584 ~~av~dp~kl~i~n 597 (797)
.+++||+.||.+.|
T Consensus 220 ~~~~~d~~kL~~~n 233 (239)
T cd00808 220 SPAIFDPEKLDWLN 233 (239)
T ss_pred CcCcCCHHHHHHHH
Confidence 99999999987665
No 28
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=100.00 E-value=8.8e-49 Score=386.74 Aligned_cols=163 Identities=50% Similarity=0.810 Sum_probs=137.1
Q ss_pred CChhHHHHHHHhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCCCCcCchhHHHHHHhcCC
Q 003764 7 GDKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHRPTLLLYIVSSK 86 (797)
Q Consensus 7 ~~~~~~~~~f~~iGL~e~kaket~KN~kls~~L~~ii~~a~~~~~~dk~~g~ll~~lat~~~~~~~~~~~~l~~~I~~g~ 86 (797)
|+++++++||++|||+|+||+||+||++++++|.++|++++...+||+++|+|||+|||+++++..+||++|++||++|+
T Consensus 1 ~s~eel~~lF~~iGL~e~kAket~KN~kls~~L~~iI~ea~~~~~~dk~~g~LLy~lAtk~k~~~~~~r~~iv~~I~~gk 80 (164)
T PF04558_consen 1 MSEEELIELFKSIGLSEKKAKETLKNKKLSASLKAIINEAGVDSGCDKKQGNLLYQLATKLKPQALPHRPFIVKYIVDGK 80 (164)
T ss_dssp --HHHHHHHHHHTT--HHHHHHHTTSHHHHHHHHHHHHTS-TT----HHHHHHHHHHHHHHTT---TTHHHHHHHHHTTS
T ss_pred CChHHHHHHHHHcCCChhhHHHHHhCHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHhCC
Confidence 67899999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccc-cchhhhHHHHHhhCCC
Q 003764 87 IKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYR-TNVGDLFAHVRKRLPW 165 (797)
Q Consensus 87 iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~k~~~~~~ry~-~n~g~ll~~vr~~LkW 165 (797)
|+|++||+||++|+++|+.+++|+++||++|||||+||+|||+++|++||++|+++|+++||+ ||+|.+++++|..|||
T Consensus 81 lkt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cGVGV~VT~E~I~~~V~~~i~~~k~~i~~~Ry~~~~~~~~~~k~~~~LkW 160 (164)
T PF04558_consen 81 LKTNLQLDAALKYLKSNPSEPIDVAEFEKACGVGVVVTPEQIEAAVEKYIEENKEEILEKRYRLFNIGLLLVKVRPSLKW 160 (164)
T ss_dssp --SHHHHHHHHHHHHHHGG-G--HHHHHHTTTTT----HHHHHHHHHHHHHHTHHHHHHHGGGGHHHHHHHHHT-GGGTT
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHcCCCeEECHHHHHHHHHHHHHHhHHHHHHHHhccCchhhHHHHHhccCCC
Confidence 999999999999999998668999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CChh
Q 003764 166 ADPK 169 (797)
Q Consensus 166 Ad~k 169 (797)
||||
T Consensus 161 Ad~k 164 (164)
T PF04558_consen 161 ADGK 164 (164)
T ss_dssp S-T-
T ss_pred CCCC
Confidence 9996
No 29
>PF03950 tRNA-synt_1c_C: tRNA synthetases class I (E and Q), anti-codon binding domain; InterPro: IPR020059 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2HZ7_A 3AII_A 1ZJW_A 1GTS_A 2RD2_A 1QRU_A 1O0B_A 1NYL_A 1EUQ_A 2RE8_A ....
Probab=100.00 E-value=5.4e-42 Score=342.93 Aligned_cols=171 Identities=43% Similarity=0.735 Sum_probs=142.5
Q ss_pred CCceeeEeccceEEEEcCCCCceeeeccccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCCCEEEEeee
Q 003764 581 APRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYA 660 (797)
Q Consensus 581 ~~R~~av~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyie~~D~~~~~~~~~~~l~~g~~v~l~~~ 660 (797)
+||+|||.||++|.|+|+|++....+++|+||+ +|++|+|.++|+++||||++| |+||+||+.|+|+++
T Consensus 1 A~R~maV~dPv~v~I~n~~~~~~~~~~~p~hPk---~~~~G~r~v~~~~~i~Ie~~D--------~~~l~~g~~v~L~~~ 69 (174)
T PF03950_consen 1 APRYMAVLDPVKVKITNFPEDEPEEIEVPLHPK---NPELGTREVPFSKTIYIERSD--------FFRLAPGKEVRLMYW 69 (174)
T ss_dssp SEEE-EECSEEEEEECT--SSSEEEEEEESSTT----GGG-EEEEEECSEEEEEGGG----------SEETTCEEEETTT
T ss_pred CCcEEEECCCEEEEEEcCCCCCEEEEEecCCCC---CccCceEEEEECceEEEEhhH--------hhhccCCCEEEEecc
Confidence 689999999999999999988888999999998 799999999999999999999 567999999999999
Q ss_pred eeEEEeEeeecCCCCCEEEEEEEEcCCCC---CCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCC
Q 003764 661 FPIKCTEVILSDDKETILHIRAEYDPSKK---TKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNP 737 (797)
Q Consensus 661 ~~i~~~~~~~~~~~g~v~e~~~~~~~~~~---~k~k~~I~Wv~~~~~~~~~~~~e~r~y~~Lf~~~~p~~~~~~~~~~n~ 737 (797)
|||+|+++. ++++|.|++++|+|+++.. +|++++|||||+ .++++||+|+|++||++++ ++ +++ +||
T Consensus 70 ~ni~i~~~~-~~~~g~v~~l~~~~~~~~~~~~~k~k~~I~Wv~~----~~~v~~e~r~yd~Lf~~~~-~~--~~~--inp 139 (174)
T PF03950_consen 70 GNIKITSIE-KDEDGKVTELKARYDPEDKEGAKKPKAIIHWVSA----KDSVPVEVRLYDHLFTVDN-DE--DDL--INP 139 (174)
T ss_dssp EEEEEEEEE-E-TTSSEEEEEEEEECTTHHHHHHHT-EE-EEEG----CC-EEEEEEEE--SBSSS--GG--TGG--B-T
T ss_pred ceEEEEEee-ecCCCCEEEEEEEEecccccCCcccCcEEEEccC----CCCeeeEEEEehhhcCCCc-cc--cce--ECC
Confidence 999999998 8889999999999998643 578889999998 6799999999999999988 54 666 999
Q ss_pred CCceeeceeEeccccccCCCCCeEEEEEeeeEEEe
Q 003764 738 DSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD 772 (797)
Q Consensus 738 ~S~~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D 772 (797)
+|+.++..|++|+++.++++|++|||||+|||+||
T Consensus 140 ~s~~~~~~~~~E~~~~~~k~g~~vQfER~Gyf~vD 174 (174)
T PF03950_consen 140 NSLKVVKNGLVEPALKNLKPGDIVQFERRGYFRVD 174 (174)
T ss_dssp TSEEEEEEEEE-GGGGGS-TT-EEEETTTEEEEEE
T ss_pred CCcEEccCEEEchhHHhCCCCCEEeEEEeeEEEeC
Confidence 99998778999999999999999999999999998
No 30
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=4.4e-27 Score=261.95 Aligned_cols=255 Identities=18% Similarity=0.199 Sum_probs=199.1
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH---HcC--CEEEEEeecCCchh-------------chHHHHHHHHHHHHHcCCC-C
Q 003764 280 PPEPNGYLHIGHAKAMFVDFGLAK---ERG--GYCYLRYDDTNPEA-------------EKKEYIDHIEEIVQWMGWE-P 340 (797)
Q Consensus 280 aPsPtG~LHIGharaal~n~~~Ar---~~~--G~~iLRidDtDp~r-------------e~~e~~~~I~e~L~wLGl~-p 340 (797)
.|+++.+.||||+|++++-+++.| ..| .+|+.+|+|+|.+- ..+.|+.++++|++.||+. |
T Consensus 29 GpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~aL~v~~p 108 (464)
T COG0215 29 GPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDALNVLPP 108 (464)
T ss_pred CCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 789999999999999998877776 233 58999999999651 2457999999999999995 6
Q ss_pred CcccCCchhHHHHHHHHHHHHHcCccccC-CCCHH-HHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEE
Q 003764 341 FKITYTSDYFQELYELAVELIRRGHAYVD-HQTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMK 418 (797)
Q Consensus 341 d~~~~qSd~~~~~ye~a~~LI~~G~AY~C-~cs~e-el~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K 418 (797)
+..++.|+|++.+.+++++||++|+||+- ..+.. +..++ +.|+..-+..+.+ +|..|. |..
T Consensus 109 ~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f--~~YG~LS~~~~le-------~l~~ga--------r~~ 171 (464)
T COG0215 109 DIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKF--KDYGKLSGRDSLE-------ELQAGA--------RVE 171 (464)
T ss_pred cccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccc--hhhHhhcCCCChh-------HHhhcc--------ccc
Confidence 88999999999999999999999999986 22222 22222 2343222222222 344444 333
Q ss_pred ecCCCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccch----------hhhccCCccEEecCcccccchhHHHHHH
Q 003764 419 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWLL 487 (797)
Q Consensus 419 ~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~-~~~PtY~fA~~----------VDD~~~gITHvlRG~E~~~~t~~q~~L~ 487 (797)
++ ..+.+..|||+|+...+..|.|.++| .|+|+||..|+ +|-|-.|+.+++ .|+.|...|.-
T Consensus 172 ~~--~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiF---PHHENEiAQse-- 244 (464)
T COG0215 172 VD--EEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIF---PHHENEIAQSE-- 244 (464)
T ss_pred cc--cccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccC---CCcccHHHHHH--
Confidence 22 23566799999999999999999999 79999999997 577888888887 78888887753
Q ss_pred HHhC-CCCCceeee-eeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCcccc
Q 003764 488 HALG-LYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 565 (797)
Q Consensus 488 ~aLg-~~~P~~~~f-~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~ 565 (797)
-+.| -+...||.| ++++++|+|||||.|| +.|++.+... |.|+++|.|+++.+++.+- .++
T Consensus 245 a~~g~~~~a~yWmH~G~l~i~geKMSKSLGN---------------fiti~d~l~~-~~p~~lR~~lls~HYR~pl-~fs 307 (464)
T COG0215 245 AATGVKPFAKYWMHNGFLNIDGEKMSKSLGN---------------FITVRDLLKK-YDPEVLRLFLLSSHYRSPL-DFS 307 (464)
T ss_pred hhhCCCcceeEeEEcceeeecCcCcccccCC---------------eeEHHHHHhh-cCHHHHHHHHHHHHhCCcc-ccC
Confidence 2446 345899987 7899999999999998 6899999988 9999999999999998664 477
Q ss_pred HhhHHHHHHH
Q 003764 566 LDRLEYHIRE 575 (797)
Q Consensus 566 ~~~Le~~ir~ 575 (797)
.+.|+++...
T Consensus 308 ee~L~~A~~~ 317 (464)
T COG0215 308 EELLEEAKKA 317 (464)
T ss_pred HHHHHHHHHH
Confidence 7778877643
No 31
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.93 E-value=2.3e-26 Score=245.41 Aligned_cols=251 Identities=18% Similarity=0.223 Sum_probs=170.7
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCchh-------------chHHHHHHHHHHHHHcCCCC-
Q 003764 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPEA-------------EKKEYIDHIEEIVQWMGWEP- 340 (797)
Q Consensus 280 aPsPtG~LHIGharaal~n~~~Ar-----~~~G~~iLRidDtDp~r-------------e~~e~~~~I~e~L~wLGl~p- 340 (797)
.|+++.++||||+|++++-+++.| .+..+++++|+|+|.+- -...|++.++++|++||+.+
T Consensus 15 GPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~~Lnv~~p 94 (300)
T PF01406_consen 15 GPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMKALNVLPP 94 (300)
T ss_dssp EEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----
T ss_pred CCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999998877766 46678999999999541 25679999999999999986
Q ss_pred CcccCCchhHHHHHHHHHHHHHcCccccCC-CCHH-HHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEE
Q 003764 341 FKITYTSDYFQELYELAVELIRRGHAYVDH-QTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMK 418 (797)
Q Consensus 341 d~~~~qSd~~~~~ye~a~~LI~~G~AY~C~-cs~e-el~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K 418 (797)
+..+++|++++.+.+++++|+++|+||.-. .+.. ++.+. +.|+.-.+ +.. ++|..|...
T Consensus 95 ~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~--~~YG~Ls~-~~~-------~~l~~~~~~--------- 155 (300)
T PF01406_consen 95 DHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKF--PDYGKLSN-QDL-------EDLEAGARV--------- 155 (300)
T ss_dssp SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGS--TTTTTTTT--SH-------HHHHHCHHH---------
T ss_pred ccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeeccc--cccccccc-cch-------hhHHhhhhc---------
Confidence 678999999999999999999999999764 2211 11111 33443222 222 344444421
Q ss_pred ecCCCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccch----------hhhccCCccEEecCcccccchhHHHHHH
Q 003764 419 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWLL 487 (797)
Q Consensus 419 ~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~-~~~PtY~fA~~----------VDD~~~gITHvlRG~E~~~~t~~q~~L~ 487 (797)
+....+.+..||++|+......+.|.++| .|+|+||..|+ +|-|..|+.+++ .|+.|...|..-
T Consensus 156 -~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~F---PHHENEiAqs~a- 230 (300)
T PF01406_consen 156 -EVDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIF---PHHENEIAQSEA- 230 (300)
T ss_dssp -TT-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTT---THHHHHHHHHHH-
T ss_pred -ccccccCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCC---CCccchHHHHHH-
Confidence 12245677799999999887779999999 89999999996 566777777766 577777777542
Q ss_pred HHhCCCCCceeee-eeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccH
Q 003764 488 HALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRL 566 (797)
Q Consensus 488 ~aLg~~~P~~~~f-~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~ 566 (797)
+.|-+...+|.| ++|+++|+||||+.++ +.||+.+..+ |+|.++|.||++.+++.+ -.++.
T Consensus 231 -~~g~~~a~~W~H~g~l~~~g~KMSKSlgN---------------~~~i~dll~~-~~~~~lR~~~l~~hYr~~-l~~s~ 292 (300)
T PF01406_consen 231 -ATGKPFANYWMHNGHLNVDGEKMSKSLGN---------------FITIRDLLKK-YSPDALRLFLLSTHYRKP-LNFSE 292 (300)
T ss_dssp -HHSS-SEEEEEEE--EEETTCE--TTTT------------------BHHHHHTT-S-HHHHHHHHHTS-TTS--EEE-H
T ss_pred -hhCchHHHHHHHHHHHhhcCccccccCCC---------------EEEHHHHhhc-CCHHHHHHHHhcCCCCCc-cccCH
Confidence 336677889987 7899999999999998 6899999976 999999999999888865 45777
Q ss_pred hhHHHH
Q 003764 567 DRLEYH 572 (797)
Q Consensus 567 ~~Le~~ 572 (797)
+.|+++
T Consensus 293 ~~l~~A 298 (300)
T PF01406_consen 293 ENLEEA 298 (300)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888775
No 32
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.91 E-value=4.4e-24 Score=243.39 Aligned_cols=256 Identities=17% Similarity=0.209 Sum_probs=195.2
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCchh-------------chHHHHHHHHHHHHHcCCCC
Q 003764 279 FPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPEA-------------EKKEYIDHIEEIVQWMGWEP 340 (797)
Q Consensus 279 FaPsPtG~LHIGharaal~n~~~Ar-----~~~G~~iLRidDtDp~r-------------e~~e~~~~I~e~L~wLGl~p 340 (797)
-.|+|+|++||||+|+++..+.++| .+...|+.++||+|++- -...|.+.+.+++++||+.+
T Consensus 27 cgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~LgI~~ 106 (465)
T TIGR00435 27 CGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALNVLP 106 (465)
T ss_pred ecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4799999999999999999999998 68889999999999652 23578999999999999997
Q ss_pred Cc-ccCCchhHHHHHHHHHHHHHcCccccCC-CCHH-HHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEE
Q 003764 341 FK-ITYTSDYFQELYELAVELIRRGHAYVDH-QTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRM 417 (797)
Q Consensus 341 d~-~~~qSd~~~~~ye~a~~LI~~G~AY~C~-cs~e-el~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~ 417 (797)
+. .++.|+|.+.+++++++|+++|+||.+. .+.- .+..+ +.|.. ...+.. ++|..|. |.
T Consensus 107 d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~--~~yG~-ls~~~~-------~~~~~~~--------~~ 168 (465)
T TIGR00435 107 PDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKF--KDYGK-LSKQDL-------DQLEAGA--------RV 168 (465)
T ss_pred CcCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEecccc--chhcc-CCCCCH-------HHHhccc--------cc
Confidence 75 5789999999999999999999999764 2110 11111 23331 112222 2344443 22
Q ss_pred EecCCCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccch----------hhhccCCccEEecCcccccchhHHHHH
Q 003764 418 KQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWL 486 (797)
Q Consensus 418 K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~-~~~PtY~fA~~----------VDD~~~gITHvlRG~E~~~~t~~q~~L 486 (797)
..+ ..+.+..||++|+.....++.|.++| .|+|+||..|+ +|=|..|+.|++ .|+.+...|...
T Consensus 169 ~~~--~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~f---pHhene~aqs~a 243 (465)
T TIGR00435 169 DVD--EAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIF---PHHENEIAQSEA 243 (465)
T ss_pred Ccc--cccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeecccccccc---chHHHHHHHHHH
Confidence 222 34667799999999887788899999 79999999997 666777788876 567777766532
Q ss_pred HHHhCCCCCceeee-eeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCcccc
Q 003764 487 LHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 565 (797)
Q Consensus 487 ~~aLg~~~P~~~~f-~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~ 565 (797)
..|.+.+.+|.+ +++.++|.|||||+|+ +.+++.+.+. +.|+++|.|+++.+++. +..++
T Consensus 244 --~~g~~~~~~~~h~g~v~~~g~KMSKS~GN---------------~i~~~dll~~-~~~dalR~~ll~~~~~~-~l~fs 304 (465)
T TIGR00435 244 --AFGKQLAKYWMHNGFLMIDNEKMSKSLGN---------------FFTVRDVLKN-YDPEILRYFLLSVHYRS-PLDFS 304 (465)
T ss_pred --hcCCCCCcEEEEeeEEEecCccccccCCC---------------cCCHHHHHHH-CCHHHHHHHHHhCCCCC-CCccC
Confidence 357667778755 7899999999999998 4688999886 99999999999877654 45688
Q ss_pred HhhHHHHHHHh
Q 003764 566 LDRLEYHIREE 576 (797)
Q Consensus 566 ~~~Le~~ir~~ 576 (797)
.+.|+++.+.+
T Consensus 305 ~~~l~~a~~~~ 315 (465)
T TIGR00435 305 EELLEAAKNAL 315 (465)
T ss_pred HHHHHHHHHHH
Confidence 88888776543
No 33
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.91 E-value=1.3e-23 Score=239.77 Aligned_cols=262 Identities=18% Similarity=0.212 Sum_probs=193.2
Q ss_pred CCeEEEE-eCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCchh-------------chHHHHHHHHHH
Q 003764 272 GGNVLTR-FPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEA-------------EKKEYIDHIEEI 332 (797)
Q Consensus 272 ~g~v~tR-FaPsPtG~LHIGharaal~n~~~Ar~-----~~G~~iLRidDtDp~r-------------e~~e~~~~I~e~ 332 (797)
++.|... .+|+|+|++||||+|++++.+.+||. +...|+..+||+|+.- -...|.+.+.++
T Consensus 21 ~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~ 100 (463)
T PRK00260 21 PGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHED 100 (463)
T ss_pred CCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4555555 59999999999999999999999985 7789999999999642 256889999999
Q ss_pred HHHcCC-CCCcccCCchhHHHHHHHHHHHHHcCccccCCCCHH-HHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccC
Q 003764 333 VQWMGW-EPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEE 410 (797)
Q Consensus 333 L~wLGl-~pd~~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~e-el~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~ 410 (797)
+++||+ .||..++.|+|.+.+++++++|+++|+||.+..+.- ++.+. +.|+.- ..+.. ++|..|.
T Consensus 101 ~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~--~~yg~l-s~~~~-------~~~~~~~--- 167 (463)
T PRK00260 101 MDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRKF--PDYGKL-SGRNL-------DELQAGA--- 167 (463)
T ss_pred HHHcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCeEEEecccc--cccccC-CCCCH-------HHHhccC---
Confidence 999999 567778899999999999999999999995421110 11111 234422 12222 3454443
Q ss_pred CceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccc-h---------hhhccCCccEEecCcccccc
Q 003764 411 GKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAH-C---------IVDSIENITHSLCTLEFETR 479 (797)
Q Consensus 411 g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~-~~~PtY~fA~-~---------VDD~~~gITHvlRG~E~~~~ 479 (797)
|. +....+.+..||++|+.....++.|.++| .|.|+||..| + +|-|..|+.|++ .|+.+
T Consensus 168 -----~~--~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~Dlif---pHh~n 237 (463)
T PRK00260 168 -----RV--EVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIF---PHHEN 237 (463)
T ss_pred -----cC--CcccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCC---CchHh
Confidence 32 22334677899999999877888899999 6899999999 3 455555555544 47777
Q ss_pred hhHHHHHHHHhCCCCCceeee-eeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCC
Q 003764 480 RASYFWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGIS 558 (797)
Q Consensus 480 t~~q~~L~~aLg~~~P~~~~f-~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s 558 (797)
.-.|.. ...|.+.+.+|-| +++..+|+|||||+|+ ..++..+.+. |.|+++|.|+++..+.
T Consensus 238 eiaqs~--a~~g~p~~~~w~H~g~v~~~G~KMSKS~GN---------------~i~~~dll~~-~~~d~lR~~ll~~~~~ 299 (463)
T PRK00260 238 EIAQSE--AATGKPFANYWMHNGFVTVNGEKMSKSLGN---------------FFTIRDLLKK-YDPEVLRFFLLSAHYR 299 (463)
T ss_pred HHHHHH--HhcCCCcceEEEEccEEccCCCcccCcCCC---------------CCCHHHHHHH-cCchHhHHHHHhCCCC
Confidence 666642 2346555667865 7899999999999998 4688888875 9999999999875554
Q ss_pred CCCccccHhhHHHHHHH
Q 003764 559 RSDSLIRLDRLEYHIRE 575 (797)
Q Consensus 559 ~~~~~~~~~~Le~~ir~ 575 (797)
.+..++.+.|+++.+.
T Consensus 300 -~~~~fs~~~l~~a~~~ 315 (463)
T PRK00260 300 -SPLNFSEEALEQAKKA 315 (463)
T ss_pred -CCCccCHHHHHHHHHH
Confidence 3446777777766554
No 34
>PLN02946 cysteine-tRNA ligase
Probab=99.91 E-value=1.9e-24 Score=248.36 Aligned_cols=254 Identities=15% Similarity=0.142 Sum_probs=196.8
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCch-------------hchHHHHHHHHHHHHHcCCCC-
Q 003764 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWEP- 340 (797)
Q Consensus 280 aPsPtG~LHIGharaal~n~~~Ar-----~~~G~~iLRidDtDp~-------------re~~e~~~~I~e~L~wLGl~p- 340 (797)
.|+|+|++||||+|++++.+.++| ++...|+..|||+|.+ .-...|.+.+.++++.||+.+
T Consensus 87 GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~~~LnI~~p 166 (557)
T PLN02946 87 GVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAYLHCLPP 166 (557)
T ss_pred CCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 799999999999999999888887 4667899999999954 124578999999999999974
Q ss_pred CcccCCchhHHHHHHHHHHHHHcCccccCCCCHH-HHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEe
Q 003764 341 FKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQ 419 (797)
Q Consensus 341 d~~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~e-el~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~ 419 (797)
+..+++|+|++.+.+++++|+++|+||.-..+.. .+.++ +.|+.-. ++.. ++|..|. |+.
T Consensus 167 ~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f--~~YG~Ls-~~~l-------~~l~~g~--------rv~- 227 (557)
T PLN02946 167 SVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKF--PEYGKLS-GRKL-------EDNRAGE--------RVA- 227 (557)
T ss_pred CeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcc--hhhhhcC-CCCh-------hHhhcCC--------CCC-
Confidence 4578999999999999999999999995221110 11111 2343221 2222 3455554 332
Q ss_pred cCCCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccch----------hhhccCCccEEecCcccccchhHHHHHHH
Q 003764 420 DMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWLLH 488 (797)
Q Consensus 420 d~~~~~~~~~D~V~~r~~~~~h~~~gd~~-~~~PtY~fA~~----------VDD~~~gITHvlRG~E~~~~t~~q~~L~~ 488 (797)
....+.+..||++|+.....+|.|.++| .|+|+||..|+ +|-|-.|+.|++ .|+.|...|.. .
T Consensus 228 -~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~F---PHHENEiAQse--a 301 (557)
T PLN02946 228 -VDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVF---PHHENEIAQSC--A 301 (557)
T ss_pred -cccccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccCC---CcccchHHHHH--H
Confidence 2335677899999998877779999999 89999999998 788999999998 78888888863 2
Q ss_pred HhCCCCCceeee-eeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHh
Q 003764 489 ALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLD 567 (797)
Q Consensus 489 aLg~~~P~~~~f-~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~ 567 (797)
+.|....++|.| ++++++|+|||||+|+ +.|++.+.+. |.|.++|.|+++.+++. +..++.+
T Consensus 302 ~~g~~~a~yW~H~G~v~~~G~KMSKSlGN---------------~itl~dll~~-y~~dalR~~lLs~hyr~-~l~fs~e 364 (557)
T PLN02946 302 ACCDSNISYWIHNGFVTVDSEKMSKSLGN---------------FFTIRQVIDL-YHPLALRLFLLGTHYRS-PINYSDV 364 (557)
T ss_pred HhCCCCCceeeEeeEEEeCCCCcCCcCCC---------------cCCHHHHHHh-cCccceeeeeeccCCCC-CcEecHH
Confidence 346555667865 8899999999999998 5799999986 99999999999877664 4468888
Q ss_pred hHHHHHHH
Q 003764 568 RLEYHIRE 575 (797)
Q Consensus 568 ~Le~~ir~ 575 (797)
.|+++.+.
T Consensus 365 ~L~~a~~~ 372 (557)
T PLN02946 365 QLESASER 372 (557)
T ss_pred HHHHHHHH
Confidence 88877553
No 35
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.90 E-value=9.1e-24 Score=239.50 Aligned_cols=250 Identities=15% Similarity=0.157 Sum_probs=195.8
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecC----------Cch-------------hchHHHHHHHHH
Q 003764 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDT----------NPE-------------AEKKEYIDHIEE 331 (797)
Q Consensus 280 aPsPtG~LHIGharaal~n~~~Ar-----~~~G~~iLRidDt----------Dp~-------------re~~e~~~~I~e 331 (797)
.|+++.++||||+|++++.+.++| .+...|+++|+|+ |++ .-...|.+.+.+
T Consensus 28 GpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~~~~~f~~ 107 (481)
T PRK14534 28 GPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRFFTEAFFD 107 (481)
T ss_pred CCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 688899999999999999888877 4567899999999 653 124578899999
Q ss_pred HHHHcCCCCC-cccCCchhHHHHHHHHHHHHHcCcccc-----CCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhh-
Q 003764 332 IVQWMGWEPF-KITYTSDYFQELYELAVELIRRGHAYV-----DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMR- 404 (797)
Q Consensus 332 ~L~wLGl~pd-~~~~qSd~~~~~ye~a~~LI~~G~AY~-----C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~- 404 (797)
+++.||+.++ -.+.+|+|.+.+.+++++|+++|+||. +||... + +.|..-. .+.. ++|.
T Consensus 108 d~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~----~--~~YG~ls-~~~l-------~~l~~ 173 (481)
T PRK14534 108 DCKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC----F--KSYGQMA-GINL-------NDFKD 173 (481)
T ss_pred HHHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc----c--cchhhhc-CCCH-------HHHhh
Confidence 9999999876 356789999999999999999999995 333322 1 2343221 2222 2332
Q ss_pred -cCcccCCceEEEEEecCCCCCCCcCccEEEEEe---cCCCCCCCCcc-cccccccccch----------hhhccCCccE
Q 003764 405 -NGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIK---FTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITH 469 (797)
Q Consensus 405 -~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~r~~---~~~h~~~gd~~-~~~PtY~fA~~----------VDD~~~gITH 469 (797)
.|. |+. ....+.+..||++|+.. .+.++.|.++| .|+|+||..|+ +|-|..|+.|
T Consensus 174 ~~~~--------~v~--~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg~~~DIH~GG~Dl 243 (481)
T PRK14534 174 MSVS--------RVE--IDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLGGVDH 243 (481)
T ss_pred hccC--------cCC--cccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcCCcceEEeccccc
Confidence 222 222 23356777999999975 45577889999 89999999997 7889999999
Q ss_pred EecCcccccchhHHHHHHHHhCCCCCceeee-eeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHH
Q 003764 470 SLCTLEFETRRASYFWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSI 548 (797)
Q Consensus 470 vlRG~E~~~~t~~q~~L~~aLg~~~P~~~~f-~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI 548 (797)
++ .|+.+.+.|.. -+.|...+.+|.| ++++++|.|||||.|+ +.|++.|...|+.|.++
T Consensus 244 iF---PHHene~Aqs~--a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN---------------~i~l~dll~~~~~~~al 303 (481)
T PRK14534 244 IG---VHHINEIAIAE--CYLNKKWCDMFVHGEFLIMEYEKMSKSNNN---------------FITIKDLEDQGFSPLDF 303 (481)
T ss_pred CC---CcchhHHHHHh--hhcCCCcceEEEEecEEEecCceecccCCC---------------cccHHHHHhcCCChhHH
Confidence 87 78899988863 2347788899987 6899999999999998 57999999999999999
Q ss_pred HHHHHHhCCCCCCccccHhhHHHHHH
Q 003764 549 NAFVQGIGISRSDSLIRLDRLEYHIR 574 (797)
Q Consensus 549 ~~fl~~lG~s~~~~~~~~~~Le~~ir 574 (797)
|.|+++..++.+ ..++++.|+++..
T Consensus 304 R~~lls~~yr~~-l~Fs~e~l~~a~~ 328 (481)
T PRK14534 304 RYFCLTAHYRTQ-LKFTFNNLKACKI 328 (481)
T ss_pred HHHHHhCCCCCC-CCCCHHHHHHHHH
Confidence 999888877755 4688899988863
No 36
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.90 E-value=8.7e-24 Score=234.42 Aligned_cols=259 Identities=15% Similarity=0.057 Sum_probs=195.3
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCch-------------hchHHHHHHHHHHHHHcCC-CC
Q 003764 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGW-EP 340 (797)
Q Consensus 280 aPsPtG~LHIGharaal~n~~~Ar-----~~~G~~iLRidDtDp~-------------re~~e~~~~I~e~L~wLGl-~p 340 (797)
.|+|+|++||||+|+++..+.++| .+...|+..+||+|.+ .-...|.+.+.++++.||+ .|
T Consensus 16 GpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~~Lni~~~ 95 (384)
T PRK12418 16 GITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDMEALRVLPP 95 (384)
T ss_pred CCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 799999999999999999888887 3557899999999954 1245788999999999997 67
Q ss_pred CcccCCchhHHHHHHHHHHHHHcCccccCCC----CHH-HHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEE
Q 003764 341 FKITYTSDYFQELYELAVELIRRGHAYVDHQ----TPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 415 (797)
Q Consensus 341 d~~~~qSd~~~~~ye~a~~LI~~G~AY~C~c----s~e-el~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~l 415 (797)
+..+++|++.+.+.+++++|+++|+||.-.. +.. ++.+. +.|... .++..+ +|..|.. .
T Consensus 96 ~~~~raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~--~~YG~l-s~~~~~-------~~~~~~~---~--- 159 (384)
T PRK12418 96 RDYVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDAT--PQFGYE-SGYDRA-------TMLELFA---E--- 159 (384)
T ss_pred CccccCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCch--hhcccc-cCCCHH-------HHHhhhc---c---
Confidence 8889999999999999999999999996432 111 22222 234322 223332 3332110 0
Q ss_pred EEEecC-CCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccch----------hhhccCCccEEecCcccccchhHH
Q 003764 416 RMKQDM-QNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASY 483 (797)
Q Consensus 416 R~K~d~-~~~~~~~~D~V~~r~~~~~h~~~gd~~-~~~PtY~fA~~----------VDD~~~gITHvlRG~E~~~~t~~q 483 (797)
|. ++. ...+.+..||++||...+.+|.|.++| .|+|+||..|+ +|-|..|+.+++ .|+.+...|
T Consensus 160 ~~-~~~~~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~F---PHHeneiaq 235 (384)
T PRK12418 160 RG-GDPDRPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIF---PHHEFSAAH 235 (384)
T ss_pred cc-cCcccccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCcccccCcccccc---chhHhHHHH
Confidence 10 011 124667799999999877789999999 89999999996 688888888887 688887777
Q ss_pred HHHHHHhCC-CCCceeee-eeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCC
Q 003764 484 FWLLHALGL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD 561 (797)
Q Consensus 484 ~~L~~aLg~-~~P~~~~f-~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~ 561 (797)
.. -+.|- +.+.+|.+ ++|+.+|+|||||++| +.++..+.+.|+.|.++|.||++.+++.+
T Consensus 236 ~~--a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN---------------~i~~~ell~~G~d~~~lR~~lls~~yr~~- 297 (384)
T PRK12418 236 AE--AATGERRFARHYVHAGMIGLDGEKMSKSRGN---------------LVFVSRLRAAGVDPAAIRLALLAGHYRAD- 297 (384)
T ss_pred HH--HhcCCCCcceEEEECCEECCCCCcccCcCCC---------------cCCHHHHHhccCChhheeEEEeccCCCCC-
Confidence 53 23454 66789988 6799999999999998 57888888889999999999886666654
Q ss_pred ccccHhhHHHHHHHh
Q 003764 562 SLIRLDRLEYHIREE 576 (797)
Q Consensus 562 ~~~~~~~Le~~ir~~ 576 (797)
..++.+.|+++.+..
T Consensus 298 l~fs~e~l~~a~~~l 312 (384)
T PRK12418 298 REWTDAVLAEAEARL 312 (384)
T ss_pred cccCHHHHHHHHHHH
Confidence 457788888765543
No 37
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.90 E-value=2.6e-23 Score=236.77 Aligned_cols=251 Identities=17% Similarity=0.204 Sum_probs=195.5
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecC----------Cchh-------------chHHHHHHHHH
Q 003764 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDT----------NPEA-------------EKKEYIDHIEE 331 (797)
Q Consensus 280 aPsPtG~LHIGharaal~n~~~Ar-----~~~G~~iLRidDt----------Dp~r-------------e~~e~~~~I~e 331 (797)
.|++++++||||+|+++..+.++| .+...|+.+|+|+ |+.- -...|.+.+.+
T Consensus 30 GpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~~~~~~f~~ 109 (490)
T PRK14536 30 GPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAHYTAAFFR 109 (490)
T ss_pred CCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 799999999999999998888887 4567899999999 6441 24578899999
Q ss_pred HHHHcCCCC-CcccCCchhHHHHHHHHHHHHHcCcccc-----CCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhc
Q 003764 332 IVQWMGWEP-FKITYTSDYFQELYELAVELIRRGHAYV-----DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRN 405 (797)
Q Consensus 332 ~L~wLGl~p-d~~~~qSd~~~~~ye~a~~LI~~G~AY~-----C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~ 405 (797)
+++.||+.+ +..++.++|.+.+.+++++|+++|+||. .||... + +.|+.- ..+.. ++|..
T Consensus 110 d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~----~--~~YG~L-s~~~~-------~~l~~ 175 (490)
T PRK14536 110 DTARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT----F--PSYGSL-ASAAV-------EDLQA 175 (490)
T ss_pred HHHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc----c--cchhhh-cCCCH-------HHhhc
Confidence 999999986 5568999999999999999999999995 333321 1 233321 22232 33444
Q ss_pred CcccCCceEEEEEecCCCCCCCcCccEEEEEec--CC-CCCCCCcc-cccccccccch----------hhhccCCccEEe
Q 003764 406 GRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKF--TP-HPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSL 471 (797)
Q Consensus 406 G~~~~g~~~lR~K~d~~~~~~~~~D~V~~r~~~--~~-h~~~gd~~-~~~PtY~fA~~----------VDD~~~gITHvl 471 (797)
|. |+. ....+.+..||++|+... .. .+.|.++| .|+|+||..|+ +|-|..|+.+++
T Consensus 176 g~--------~v~--~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~DliF 245 (490)
T PRK14536 176 GA--------RIE--HDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGVDHIR 245 (490)
T ss_pred CC--------cCC--CCCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHcCCceeEEeccccCCC
Confidence 43 322 223567779999998753 22 46799999 79999999997 588888899887
Q ss_pred cCcccccchhHHHHHHHHhCCCCCceeee-eeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHH
Q 003764 472 CTLEFETRRASYFWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINA 550 (797)
Q Consensus 472 RG~E~~~~t~~q~~L~~aLg~~~P~~~~f-~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~ 550 (797)
.|+.+...|.. -+.|.+.+.+|.+ ++|+++|.|||||.|+ +.|++.|...|+.|.++|.
T Consensus 246 ---PHHeneiAqs~--a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN---------------~itl~dll~~g~~~~alR~ 305 (490)
T PRK14536 246 ---VHHTNEIAQCE--AATGKPWVRYWLHHEFLLMNKGKMSKSAGQ---------------FLTLSSLQEKGFQPLDYRF 305 (490)
T ss_pred ---cchhhHHHHHH--HhcCCCcceEEEEcCEEeecCccccccCCC---------------cccHHHHHhcCCCHHHHHH
Confidence 78888888852 2247777889987 6899999999999998 5799999999999999999
Q ss_pred HHHHhCCCCCCccccHhhHHHHHHH
Q 003764 551 FVQGIGISRSDSLIRLDRLEYHIRE 575 (797)
Q Consensus 551 fl~~lG~s~~~~~~~~~~Le~~ir~ 575 (797)
|+++..++.+ ..++++.|+++.+.
T Consensus 306 ~lls~~yr~~-l~Fs~e~l~~a~~~ 329 (490)
T PRK14536 306 FLLGGHYRSQ-LAFSWEALKTAKAA 329 (490)
T ss_pred HHHhCCCCCC-CCCCHHHHHHHHHH
Confidence 9998777654 46888888887663
No 38
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.89 E-value=3e-23 Score=231.28 Aligned_cols=257 Identities=15% Similarity=0.057 Sum_probs=191.7
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCch-------------hchHHHHHHHHHHHHHcCCC-C
Q 003764 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWE-P 340 (797)
Q Consensus 280 aPsPtG~LHIGharaal~n~~~Ar-----~~~G~~iLRidDtDp~-------------re~~e~~~~I~e~L~wLGl~-p 340 (797)
.|+|++++||||+|+++..++++| .+...|+..+||+|.+ .-...|.+.+.++++.||+. |
T Consensus 43 GpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~~ 122 (411)
T TIGR03447 43 GITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALRVLPP 122 (411)
T ss_pred CCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 799999999999999999888888 4667899999999954 12457889999999999986 7
Q ss_pred CcccCCchhHHHHHHHHHHHHHcCccccCCC----CHH-HHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEE
Q 003764 341 FKITYTSDYFQELYELAVELIRRGHAYVDHQ----TPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 415 (797)
Q Consensus 341 d~~~~qSd~~~~~ye~a~~LI~~G~AY~C~c----s~e-el~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~l 415 (797)
+..+++|++.+.+.+++++|+++|+||.-.. +.. ++.++ +.|.... ++..+ +|..|.. .
T Consensus 123 d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~--~~YG~Ls-~~~~~-------~~~~~~~---~--- 186 (411)
T TIGR03447 123 RDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEAT--EQFGYES-GYDRA-------TMLELFA---E--- 186 (411)
T ss_pred CcccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccch--hcccccc-CCCHH-------HHHhhhc---c---
Confidence 8889999999999999999999999996432 111 22222 2344222 23332 2332100 0
Q ss_pred E-EEecCCCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccch----------hhhccCCccEEecCcccccchhHH
Q 003764 416 R-MKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASY 483 (797)
Q Consensus 416 R-~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~-~~~PtY~fA~~----------VDD~~~gITHvlRG~E~~~~t~~q 483 (797)
| ...+ ...+.+..||++|+.....++.|.++| .|+|+||..|+ +|-|..|+.+++ .|+.+.-.|
T Consensus 187 ~~~~~~-~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~Dih~GG~DLif---pHheneiaq 262 (411)
T TIGR03447 187 RGGDPD-RPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQGGGSDLIF---PHHEFSAAH 262 (411)
T ss_pred cccCcc-cccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCceecccCcccccc---cchHhHHHH
Confidence 1 1111 124667799999999877789999999 89999999996 566666777766 566666666
Q ss_pred HHHHHHhCC-CCCceeee-eeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCC
Q 003764 484 FWLLHALGL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD 561 (797)
Q Consensus 484 ~~L~~aLg~-~~P~~~~f-~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~ 561 (797)
..- +.|- +.+++|.+ ++|+.+|+|||||++| +.+++.+.+.|+.|.++|.|+++.+++.+
T Consensus 263 ~~A--~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN---------------~i~~~dl~~~g~dp~~lRl~lls~~Yr~p- 324 (411)
T TIGR03447 263 AEA--ATGVRRMARHYVHAGMIGLDGEKMSKSLGN---------------LVFVSKLRAAGVDPAAIRLGLLAGHYRQD- 324 (411)
T ss_pred HHH--hcCCCCcceEEEECCEECcCCCCccCcCCC---------------CCCHHHHHhcCCCcccEEEEEecCCCCCC-
Confidence 421 2465 67889988 6899999999999998 57899999899999999999987777654
Q ss_pred ccccHhhHHHHHH
Q 003764 562 SLIRLDRLEYHIR 574 (797)
Q Consensus 562 ~~~~~~~Le~~ir 574 (797)
..++.+.|+++.+
T Consensus 325 l~fs~e~l~~a~~ 337 (411)
T TIGR03447 325 RDWTDAVLAEAEA 337 (411)
T ss_pred CccCHHHHHHHHH
Confidence 4577777776543
No 39
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.89 E-value=2.2e-22 Score=233.13 Aligned_cols=249 Identities=15% Similarity=0.160 Sum_probs=193.0
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCchh-------------chHHHHHHHHHHHHHcCCCCC
Q 003764 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPEA-------------EKKEYIDHIEEIVQWMGWEPF 341 (797)
Q Consensus 280 aPsPtG~LHIGharaal~n~~~Ar-----~~~G~~iLRidDtDp~r-------------e~~e~~~~I~e~L~wLGl~pd 341 (797)
.|+|++++||||+|++++.+.++| .+...|+..+||+|.+- -...|.+.+.++++.||+.++
T Consensus 255 GPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d~~~LnI~~p 334 (699)
T PRK14535 255 GMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADALGVLRP 334 (699)
T ss_pred CCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 788999999999999999888887 45678999999999541 246789999999999999865
Q ss_pred -cccCCchhHHHHHHHHHHHHHcCccccC------CCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceE
Q 003764 342 -KITYTSDYFQELYELAVELIRRGHAYVD------HQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 414 (797)
Q Consensus 342 -~~~~qSd~~~~~ye~a~~LI~~G~AY~C------~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~ 414 (797)
..+..|+|.+.+.+++++|+++|+||.- ||.. .+ +.|+.- ..++. ++|+.|.
T Consensus 335 ~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~----~f--~~YG~L-S~~~~-------~~l~~g~------- 393 (699)
T PRK14535 335 DIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVR----EF--AAYGQL-SGKSL-------DDLRAGE------- 393 (699)
T ss_pred cEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecc----cc--cccccc-cCCCh-------HHhcCCC-------
Confidence 4678999999999999999999999942 3332 22 234322 12222 3455444
Q ss_pred EEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccch----------hhhccCCccEEecCcccccchhHH
Q 003764 415 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASY 483 (797)
Q Consensus 415 lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~-~~~PtY~fA~~----------VDD~~~gITHvlRG~E~~~~t~~q 483 (797)
|+..+ ..+.+..||++|+.....+|.|.++| .|+|+||..|+ +|-|..|+.|++ .|+.|...|
T Consensus 394 -rve~d--~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLiF---PHHENEiAQ 467 (699)
T PRK14535 394 -RVEVD--GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF---PHHENEIAQ 467 (699)
T ss_pred -ccccc--cccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccCC---CCCccHHHH
Confidence 33322 34667799999999887788999999 79999999996 688999999998 788998888
Q ss_pred HHHHHHhCC----------------CCCceeee-eeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChH
Q 003764 484 FWLLHALGL----------------YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTST 546 (797)
Q Consensus 484 ~~L~~aLg~----------------~~P~~~~f-~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~Pe 546 (797)
..- +.|. +..++|.| +++.++|+|||||.|+ +.+++.+.+. |.|+
T Consensus 468 seA--~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN---------------~it~~dlLe~-ygpd 529 (699)
T PRK14535 468 SVG--ATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGN---------------FFTIREVLKQ-YDPE 529 (699)
T ss_pred HHH--hhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCC---------------cCCHHHHHHh-CCHH
Confidence 632 2343 13568876 7899999999999998 5789998885 9999
Q ss_pred HHHHHHHHhCCCCCCccccHhhHHHHHH
Q 003764 547 SINAFVQGIGISRSDSLIRLDRLEYHIR 574 (797)
Q Consensus 547 AI~~fl~~lG~s~~~~~~~~~~Le~~ir 574 (797)
++|.|+++.+++.+ ..++.+.|+++.+
T Consensus 530 alRl~lLsshYRsp-L~fS~e~Le~Ak~ 556 (699)
T PRK14535 530 VVRFFILRAHYRSP-LNYSDAHLDDAKG 556 (699)
T ss_pred HHHHHHHcCCCCCC-CCcCHHHHHHHHH
Confidence 99999998666544 4577777877653
No 40
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.86 E-value=2.1e-21 Score=228.74 Aligned_cols=268 Identities=13% Similarity=0.166 Sum_probs=192.6
Q ss_pred CeEEEEe--CCCCCCcCchhHHHHHHHHHHHHH------HcCCEEEEEeecCCchh--------------chHHHHHHHH
Q 003764 273 GNVLTRF--PPEPNGYLHIGHAKAMFVDFGLAK------ERGGYCYLRYDDTNPEA--------------EKKEYIDHIE 330 (797)
Q Consensus 273 g~v~tRF--aPsPtG~LHIGharaal~n~~~Ar------~~~G~~iLRidDtDp~r--------------e~~e~~~~I~ 330 (797)
+..|+-| .|+++++.||||||+.++.+.++| +|...|+.+|+|+|.+- -...|++.++
T Consensus 58 ~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~ 137 (651)
T PTZ00399 58 GRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFF 137 (651)
T ss_pred CCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3334445 677789999999999999888877 24478999999999541 1347889999
Q ss_pred HHHHHcCCCC-CcccCCchhHHHHHHHHHHHHHcCccccCCCCHH-HHHHHhc--cCCCCCCCCCChHHHhHHHHHhhcC
Q 003764 331 EIVQWMGWEP-FKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYRE--KKMNSPWRDRPIAESLKLFEDMRNG 406 (797)
Q Consensus 331 e~L~wLGl~p-d~~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~e-el~~~r~--~~~~~~~R~~s~ee~l~~fe~m~~G 406 (797)
++++.||+.+ +.+++.|+|++.+.+++++|+++|+||.-..+-. ++.+++. ..|. .++++. ....+.|..|
T Consensus 138 ~d~~~Lni~~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~~~~Yg----~L~p~~-~~~~~~~~~g 212 (651)
T PTZ00399 138 EDMKALNVRPPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYP----KLEPES-VADEDRIAEG 212 (651)
T ss_pred HHHHHcCCCCCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhcccchhhHH----hhChhh-cCCHHHHhcc
Confidence 9999999986 5688999999999999999999999996432211 2222221 1222 122211 0111223333
Q ss_pred cccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccch----------hhhccCCccEEecCcc
Q 003764 407 RIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLE 475 (797)
Q Consensus 407 ~~~~g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~-~~~PtY~fA~~----------VDD~~~gITHvlRG~E 475 (797)
. |. +. +....+.+..||++|+...+.+|.|.++| .|.|+||..|+ +|-|..||.+++ .
T Consensus 213 ~---~~----l~-~~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~DL~F---P 281 (651)
T PTZ00399 213 E---GA----LG-KVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGIDLKF---P 281 (651)
T ss_pred c---CC----cc-ccCcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCCCCCC---C
Confidence 2 10 11 11123556699999999988889999999 79999999885 567777777776 6
Q ss_pred cccchhHHHHHHHHhCC-CCCceeee-eeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHH
Q 003764 476 FETRRASYFWLLHALGL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQ 553 (797)
Q Consensus 476 ~~~~t~~q~~L~~aLg~-~~P~~~~f-~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~ 553 (797)
|+.|.-.|.-- +.|- +.+.+|.| ++|+++|.|||||.|+ +.|++.+... |.|.++|.|++
T Consensus 282 HHeNEiAQseA--~~~~~~~v~y~~H~G~L~i~G~KMSKSLGN---------------fItp~dlLek-ygaDaLR~~lL 343 (651)
T PTZ00399 282 HHDNELAQSEA--YFDKHQWVNYFLHSGHLHIKGLKMSKSLKN---------------FITIRQALSK-YTARQIRLLFL 343 (651)
T ss_pred cchhHHHHHHH--hhCCCCCCcEEEEEEEEEeccchhhhcCCC---------------cccHHHHHHH-cChHHHHHHHH
Confidence 77777777532 2343 45788988 9999999999999998 5788898887 99999999998
Q ss_pred HhCCCCCCccccHhhHHHHHHH
Q 003764 554 GIGISRSDSLIRLDRLEYHIRE 575 (797)
Q Consensus 554 ~lG~s~~~~~~~~~~Le~~ir~ 575 (797)
+.++.. +..++++.+.++...
T Consensus 344 s~~~~~-dldFS~e~l~~a~~~ 364 (651)
T PTZ00399 344 LHKWDK-PMNYSDESMDEAIEK 364 (651)
T ss_pred hcCCCC-CCccCHHHHHHHHHH
Confidence 766654 446788877766543
No 41
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=3.9e-21 Score=212.29 Aligned_cols=262 Identities=14% Similarity=0.134 Sum_probs=191.7
Q ss_pred CcHHHHHHhhhhcCCeEEEEe--CCCCCCcCchhHHHHHHHHHHHHH------HcCCEEEEEeecCCch-----h-----
Q 003764 259 NTKEVLDKHLEVTGGNVLTRF--PPEPNGYLHIGHAKAMFVDFGLAK------ERGGYCYLRYDDTNPE-----A----- 320 (797)
Q Consensus 259 ~~~~~~~~~~~~~~g~v~tRF--aPsPtG~LHIGharaal~n~~~Ar------~~~G~~iLRidDtDp~-----r----- 320 (797)
||.-..++-+.-..|+-+|.| .|+.+..-||||||+++--+++-| .|+..|+++|+|+|.+ |
T Consensus 39 NslTr~Ke~fip~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~ 118 (586)
T KOG2007|consen 39 NSLTRQKEVFIPNNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMG 118 (586)
T ss_pred eccccccceeeeCCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhc
Confidence 554444443344455557888 455557799999999987666655 5788999999999964 2
Q ss_pred ch--------HHHHHHHHHHHHHcCCCC-CcccCCchhHHHHHHHHHHHHHcCccccCCCCHH-HHHHHhccCCCCCCCC
Q 003764 321 EK--------KEYIDHIEEIVQWMGWEP-FKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYREKKMNSPWRD 390 (797)
Q Consensus 321 e~--------~e~~~~I~e~L~wLGl~p-d~~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~e-el~~~r~~~~~~~~R~ 390 (797)
+. .-|++.+..||..|.+-| +..++-|+|++++.++++++|++|.||+-..|.. ++.+ ++..|-.
T Consensus 119 e~~~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~k-----f~~~YgK 193 (586)
T KOG2007|consen 119 EKPLSLSERFCYYEEEFLQDMAALNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDK-----FPHSYGK 193 (586)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccc-----ccchhhh
Confidence 11 136789999999999875 6789999999999999999999999998754433 2222 2222222
Q ss_pred CChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccch----------
Q 003764 391 RPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC---------- 459 (797)
Q Consensus 391 ~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~-~~~PtY~fA~~---------- 459 (797)
+.-+ -+.+..| +|..+ .+.+.+..||++|+.+....|.|.++| .|.|+||..|+
T Consensus 194 L~G~-----~~~~~~g---Eg~l~-------ds~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~ 258 (586)
T KOG2007|consen 194 LVGQ-----RKNLQEG---EGVLS-------DSRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQ 258 (586)
T ss_pred hcCc-----hhhcccC---cCccc-------cccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhccc
Confidence 2211 0223333 34333 135667799999999999999999999 89999999997
Q ss_pred hhhccCCccEEecCcccccchhHHHHHHHHhCCC-CCceeee-eeccCCCceecccccccccccCccCCCCCcchhhHHH
Q 003764 460 IVDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAG 537 (797)
Q Consensus 460 VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~-~P~~~~f-~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~ 537 (797)
+|-|-.||...+ .|+.|...|.- -++.-. -..||-| |||.+.|.||||+..+ +.||+.
T Consensus 259 lDIH~GG~DL~F---PHHeNEiAQ~e--A~~~~~~wVnYflHtGhL~i~g~KMSKSLkN---------------FiTIke 318 (586)
T KOG2007|consen 259 LDIHGGGIDLAF---PHHENEIAQSE--AAFDDSQWVNYFLHTGHLTINGEKMSKSLKN---------------FITIKE 318 (586)
T ss_pred cceecCcccccC---CCcccHHHHHH--HHhcCCccceeEEEcCeeeeccchhhhhhcc---------------ceeHHH
Confidence 577888888776 67888877742 222221 2456655 8999999999999998 689999
Q ss_pred HHHcCCChHHHHHHHHHhCCCCCC
Q 003764 538 LRRRGVTSTSINAFVQGIGISRSD 561 (797)
Q Consensus 538 lrrrG~~PeAI~~fl~~lG~s~~~ 561 (797)
+... |+|.++|-||++..|..+-
T Consensus 319 ~Lk~-~sp~qLRl~fl~~~wr~~l 341 (586)
T KOG2007|consen 319 ALKK-YSPRQLRLAFLLHQWRSPL 341 (586)
T ss_pred HHHh-cCHHHHHHHHHHHHhcCcC
Confidence 8876 9999999999998887653
No 42
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.73 E-value=2.9e-17 Score=169.55 Aligned_cols=183 Identities=19% Similarity=0.140 Sum_probs=139.5
Q ss_pred EEEe-CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCch------------hchHHHHHHHHHHHHHcC
Q 003764 276 LTRF-PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE------------AEKKEYIDHIEEIVQWMG 337 (797)
Q Consensus 276 ~tRF-aPsPtG~LHIGharaal~n~~~Ar-----~~~G~~iLRidDtDp~------------re~~e~~~~I~e~L~wLG 337 (797)
+.=| +|+|||+|||||+|++++-+.+|| .+...+.--++|.+.+ .....+.+.+.+++++||
T Consensus 3 ~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~ 82 (212)
T cd00671 3 LVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLD 82 (212)
T ss_pred EEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344 899999999999999998887777 3444555555676643 234567788999999999
Q ss_pred CCCCcccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEE
Q 003764 338 WEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRM 417 (797)
Q Consensus 338 l~pd~~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~ 417 (797)
+.+|...+.|++.+.+.+.++.|+++|++|.-. + ..| +.+
T Consensus 83 i~~d~~~~es~~~~~~~~~i~~L~~~g~~~~~~------------g--~~~--------------------------~~~ 122 (212)
T cd00671 83 VRFDVWFGESSYLGLMGKVVELLEELGLLYEED------------G--ALW--------------------------LDL 122 (212)
T ss_pred CcCceecchhhhhhHHHHHHHHHHHCCCEEEeC------------C--cEE--------------------------Eec
Confidence 999988899998888889999999999998311 0 001 111
Q ss_pred EecCCCCCCCcCccEEEEEecCCCCCCCCccccccccc---ccchhhhccCCccEE--ecCcccccchhHHHHHHHHhCC
Q 003764 418 KQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD---YAHCIVDSIENITHS--LCTLEFETRRASYFWLLHALGL 492 (797)
Q Consensus 418 K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~---fA~~VDD~~~gITHv--lRG~E~~~~t~~q~~L~~aLg~ 492 (797)
. ......|+|+-|. +| .|+|+ +|+.+++..+++||+ |+|.|+..+.++|..++++||+
T Consensus 123 ~-----~~~~~~d~vl~rs-------dG-----~~~Y~~~DlA~~~~~~~~~~~~~i~v~g~~~~~~~~~~~~~~~~lg~ 185 (212)
T cd00671 123 T-----EFGDDKDRVLVRS-------DG-----TYTYFTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLFAALELLGY 185 (212)
T ss_pred h-----hhCCCCCeEEEEC-------CC-----CccchHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHHHHHHcCC
Confidence 0 0011257888886 44 78998 799999999999999 9999999999999999999998
Q ss_pred C-CCceeee--eeccC-CCceeccccc
Q 003764 493 Y-QPYVWEY--SRLNV-SNTVMSKRKL 515 (797)
Q Consensus 493 ~-~P~~~~f--~~Ln~-~g~kLSKRk~ 515 (797)
. .|.+.|. +.+.. +|.|||||+|
T Consensus 186 ~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 186 DEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred CCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 6 5666564 56554 4999999985
No 43
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.57 E-value=5.1e-14 Score=162.66 Aligned_cols=273 Identities=18% Similarity=0.072 Sum_probs=159.3
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCch-------------hchHHHHHHHHHHHHHc
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWM 336 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~-----~~G~~iLRidDtDp~-------------re~~e~~~~I~e~L~wL 336 (797)
++|==+|+|||.+||||+|+.+..+.++|. +...|+..+||.+.. .....|.+.|.++|+.|
T Consensus 4 ~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 83 (511)
T PRK11893 4 YITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEAL 83 (511)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 445558999999999999999999988883 456788889998743 23457889999999999
Q ss_pred CCCCCcccCCch--hHHHHHHHHHHHHHcCcccc----------C--CCCHHHHHHHhccCCCCCCCCC----ChHH---
Q 003764 337 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV----------D--HQTPEEIKEYREKKMNSPWRDR----PIAE--- 395 (797)
Q Consensus 337 Gl~pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~----------C--~cs~eel~~~r~~~~~~~~R~~----s~ee--- 395 (797)
|+.+|..++.++ +.+...+...+|.++|++|. | +++..++..-+ .+-..|..- +.++
T Consensus 84 ~I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~--p~~~~~~~~~~~~~~~~~f~ 161 (511)
T PRK11893 84 NISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDG--YRCPPTGAPVEWVEEESYFF 161 (511)
T ss_pred CCCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCC--CCCCCCCCcceEEecCeEEE
Confidence 999987555555 88888899999999999985 2 33444443210 000011100 0000
Q ss_pred HhHHHHHhhcCcccCCceEEEEEecC------CCCCCCcCccEEEE-EecCCCCCCCC------cc----------cccc
Q 003764 396 SLKLFEDMRNGRIEEGKATLRMKQDM------QNDNFNMYDLIAYR-IKFTPHPHAGD------KW----------CIYP 452 (797)
Q Consensus 396 ~l~~fe~m~~G~~~~g~~~lR~K~d~------~~~~~~~~D~V~~r-~~~~~h~~~gd------~~----------~~~P 452 (797)
.+..|.+........+. .++..+. .--.....|+.+.| -..=+.|..++ -| .++|
T Consensus 162 ~l~~~~~~l~~~~~~~~--~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~p 239 (511)
T PRK11893 162 RLSKYQDKLLELYEANP--DFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGYP 239 (511)
T ss_pred EcHHHHHHHHHHHHhCC--CccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhccc
Confidence 00011110000000000 0000000 00012357888888 32212222222 24 1222
Q ss_pred c----------ccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCceee-eeeccCCCceeccccccccccc
Q 003764 453 S----------YDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWE-YSRLNVSNTVMSKRKLNFLVTN 521 (797)
Q Consensus 453 t----------Y~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~~-f~~Ln~~g~kLSKRk~~~~v~~ 521 (797)
. +.+ +.|-|.+|+.++. .+......+..+++...|..|. ++++..+|+|||||+|+
T Consensus 240 ~~~~~~~~~~~~~~--~~D~~~~G~D~~~------~h~~~~~a~~~a~~~~~p~~~~~~g~v~~~G~KMSKS~GN----- 306 (511)
T PRK11893 240 DDEELLAELFNKYW--PADVHLIGKDILR------FHAVYWPAFLMAAGLPLPKRVFAHGFLTLDGEKMSKSLGN----- 306 (511)
T ss_pred cccccchhHHHhcC--CCcceEecccccc------cchhHHHHHHHhCCCCCCCEEEeeccEEECCeeecccCCc-----
Confidence 1 111 1233444444432 1222222344556777786664 58888899999999998
Q ss_pred CccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHH
Q 003764 522 KYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 575 (797)
Q Consensus 522 g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~ 575 (797)
..++..+.+. +.+.++|.|++..+....+..++++.+....+.
T Consensus 307 ----------~i~~~dll~~-~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~ 349 (511)
T PRK11893 307 ----------VIDPFDLVDE-YGVDAVRYFLLREIPFGQDGDFSREAFINRINA 349 (511)
T ss_pred ----------EEcHHHHHHH-cCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHH
Confidence 3577787776 999999999998865455667888887665544
No 44
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.56 E-value=1.9e-14 Score=166.60 Aligned_cols=225 Identities=20% Similarity=0.198 Sum_probs=151.4
Q ss_pred CCeEEEEe-CCCCCCcCchhHHHHHHHHHHHHHH--cCC---EEEEEeecCCch-------------hchHHHHHHHHHH
Q 003764 272 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAKE--RGG---YCYLRYDDTNPE-------------AEKKEYIDHIEEI 332 (797)
Q Consensus 272 ~g~v~tRF-aPsPtG~LHIGharaal~n~~~Ar~--~~G---~~iLRidDtDp~-------------re~~e~~~~I~e~ 332 (797)
+++|+.-| +|+|||+|||||+|++++.+.+||. +.| .++.-++|.+.. +....+.+.|.++
T Consensus 110 ~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (507)
T PRK01611 110 GKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKED 189 (507)
T ss_pred CCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888 9999999999999999999988883 344 555566888733 3466888999999
Q ss_pred HHHcCCCCCcccCCchhH--HHHHHHHHHHHHcCccc-cCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCccc
Q 003764 333 VQWMGWEPFKITYTSDYF--QELYELAVELIRRGHAY-VDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIE 409 (797)
Q Consensus 333 L~wLGl~pd~~~~qSd~~--~~~ye~a~~LI~~G~AY-~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~ 409 (797)
+++||+.+|..++.|+.+ +.+.+..++|.++|++| .- +
T Consensus 190 l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~---------------~------------------------ 230 (507)
T PRK01611 190 LDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVES---------------D------------------------ 230 (507)
T ss_pred HHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEee---------------C------------------------
Confidence 999999998665555443 35667788999999998 21 0
Q ss_pred CCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccc---ccchhhhccCCccEE--ecCcccccchhHHH
Q 003764 410 EGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD---YAHCIVDSIENITHS--LCTLEFETRRASYF 484 (797)
Q Consensus 410 ~g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~---fA~~VDD~~~gITHv--lRG~E~~~~t~~q~ 484 (797)
|..+++.. ..+ .-.|+|+.|. +| .|||. +|..++-... .+++ |.|.++..+-++..
T Consensus 231 -Ga~~~~~~---~~~--~~~~~vl~ks-------dG-----~~~Y~t~Dia~~~~k~~~-~d~~i~V~g~~q~~hf~~~~ 291 (507)
T PRK01611 231 -GALWVRLT---EFG--DDKDRVLIKS-------DG-----TYTYFTRDIAYHLYKFER-FDRVIYVVGADHHGHFKRLK 291 (507)
T ss_pred -CcEEEEch---hhC--CCCCeEEEEC-------CC-----CccchHHHHHHHHHHHhh-cCEEEEEECCChHHHHHHHH
Confidence 00111110 000 0137888886 34 45554 4443322222 3444 78999999999999
Q ss_pred HHHHHhCCCCC--ceeee---ee-ccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCCh-------------
Q 003764 485 WLLHALGLYQP--YVWEY---SR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTS------------- 545 (797)
Q Consensus 485 ~L~~aLg~~~P--~~~~f---~~-Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~P------------- 545 (797)
.+.++||+..+ ..+.| ++ ++.+|.|||||+|+ ..++..|.+.++..
T Consensus 292 ~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn---------------~i~l~dll~~a~g~~~~~~~~~~~a~~ 356 (507)
T PRK01611 292 AALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGN---------------VVTLDDLLDEAVGRARELIEEKEIAEA 356 (507)
T ss_pred HHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCc---------------eeEHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999998644 22333 44 46688999999998 35788888876655
Q ss_pred ---HHHHHHHHHhCCCCCCccccHhhHH
Q 003764 546 ---TSINAFVQGIGISRSDSLIRLDRLE 570 (797)
Q Consensus 546 ---eAI~~fl~~lG~s~~~~~~~~~~Le 570 (797)
.|++.|+++.. ...+..++|+.+.
T Consensus 357 vgidAiR~~~L~~~-~~~~~~Fd~~~~~ 383 (507)
T PRK01611 357 VGIDAVRYFDLSRS-RDKDLDFDLDLAL 383 (507)
T ss_pred hccceeEehhhhcC-CCCCCccCHHHHH
Confidence 66676665442 2233356665543
No 45
>PF04557 tRNA_synt_1c_R2: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 ; InterPro: IPR007638 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a region found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This region is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004819 glutamine-tRNA ligase activity, 0005524 ATP binding, 0006425 glutaminyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=99.55 E-value=1.2e-15 Score=135.25 Aligned_cols=82 Identities=39% Similarity=0.479 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHhcCCCchhhhhhhhhhhhhhhccCCCc--chhhccccCCCCCCCCccccCCCCCCCCCCCCccccccc
Q 003764 170 IVKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPE--KDEDKKFANDAPVQLPEEDLFPISNFPPPEENYKVHTEI 247 (797)
Q Consensus 170 ~vK~~vd~~~~~llgpk~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 247 (797)
+||++||.||++||||||++|+++++|+++++.++.... ............++|++|||+. ++||+||||++
T Consensus 1 avK~evD~qil~LLGPKteaD~~k~~K~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~-~~fHkPGEN~k----- 74 (84)
T PF04557_consen 1 AVKNEVDAQILELLGPKTEADLVKKKKKKKKKKKKAKKKKKEAKANAEEESERAMFEEGFLGD-LHFHKPGENYK----- 74 (84)
T ss_dssp -HHHHHHHHHHHHH-S--GGG-----------------------------------------------------------
T ss_pred CcHHHHHHHHHHHhCCCccccccCCCCCCCCCcccccccccccccccCCCCCccchhhhhhcc-cCCCCccccCC-----
Confidence 589999999999999999999998766643321110001 1111112345678999999997 88999999954
Q ss_pred ccCCCccceecCcHHHHHHh
Q 003764 248 PFSDGSVLICCNTKEVLDKH 267 (797)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~ 267 (797)
+||+++|.+|
T Consensus 75 ----------pqt~~~L~~h 84 (84)
T PF04557_consen 75 ----------PQTMPLLKKH 84 (84)
T ss_dssp --------------------
T ss_pred ----------cchHHHHhcC
Confidence 3457777776
No 46
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.43 E-value=1.6e-13 Score=132.86 Aligned_cols=133 Identities=21% Similarity=0.158 Sum_probs=101.9
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHHc-----CCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCcccCCchhH
Q 003764 276 LTRFPPEPNGYLHIGHAKAMFVDFGLAKER-----GGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYF 350 (797)
Q Consensus 276 ~tRFaPsPtG~LHIGharaal~n~~~Ar~~-----~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~~~~qSd~~ 350 (797)
++.++|+|||++||||+|.+++.+.+||.+ +..++..+||.+.....+....
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~----------------------- 57 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK----------------------- 57 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc-----------------------
Confidence 367899999999999999999999998865 8999999999997766544332
Q ss_pred HHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCc
Q 003764 351 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 430 (797)
Q Consensus 351 ~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~D 430 (797)
.++.+++.. .+...|.+...
T Consensus 58 -------------------~~~~~~~~~----------------~~~~~~~~~~~------------------------- 77 (143)
T cd00802 58 -------------------GENAKAFVE----------------RWIERIKEDVE------------------------- 77 (143)
T ss_pred -------------------CCCHHHHHH----------------HHHHHHHHHHH-------------------------
Confidence 111222211 11111111100
Q ss_pred cEEEEEecCCCCCCCCcccccccccccchhhhccCCc---cEEecCcccccchhHHHHHHHHhCCC-CCceeeeeeccC-
Q 003764 431 LIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENI---THSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNV- 505 (797)
Q Consensus 431 ~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gI---THvlRG~E~~~~t~~q~~L~~aLg~~-~P~~~~f~~Ln~- 505 (797)
|++.|++|+...++ ||.++|.|+..|...+.++++++|+. .|...+|+++..
T Consensus 78 -----------------------y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~ 134 (143)
T cd00802 78 -----------------------YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGA 134 (143)
T ss_pred -----------------------HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECC
Confidence 99999999999999 99999999999999999999999875 577778898866
Q ss_pred CCceecccc
Q 003764 506 SNTVMSKRK 514 (797)
Q Consensus 506 ~g~kLSKRk 514 (797)
+|+|||||+
T Consensus 135 ~g~KmSks~ 143 (143)
T cd00802 135 DGTKMSKSK 143 (143)
T ss_pred CCCcCCCCC
Confidence 559999995
No 47
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.42 E-value=4.9e-12 Score=137.79 Aligned_cols=243 Identities=19% Similarity=0.164 Sum_probs=138.4
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCchh--------------------------chHHH
Q 003764 277 TRFPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPEA--------------------------EKKEY 325 (797)
Q Consensus 277 tRFaPsPtG~LHIGharaal~n~~~Ar-----~~~G~~iLRidDtDp~r--------------------------e~~e~ 325 (797)
+==+|+|||.+||||+++.++.+.++| ++...|+.-+|+.+.+- -..++
T Consensus 5 ~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (312)
T cd00668 5 TTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEM 84 (312)
T ss_pred ecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHH
Confidence 334899999999999999888888777 34456777777755221 12467
Q ss_pred HHHHHHHHHHcCCCCC--c--ccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHH
Q 003764 326 IDHIEEIVQWMGWEPF--K--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFE 401 (797)
Q Consensus 326 ~~~I~e~L~wLGl~pd--~--~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe 401 (797)
.+.|.++|+.||+..| . .+...+|.+...+...+|.++|++|.-.-.. +.. ..-+-+.+ +-.-++.+
T Consensus 85 ~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v------~~~--~~~f~~~~-~l~~~~~~ 155 (312)
T cd00668 85 SGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV------RIT--EQWFFDMP-KFKEKLLK 155 (312)
T ss_pred HHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee------Eee--eeEEEEcH-HHHHHHHH
Confidence 8899999999999765 4 3445567777788889999999999733211 000 00000000 00001112
Q ss_pred HhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhc---------cC-------
Q 003764 402 DMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDS---------IE------- 465 (797)
Q Consensus 402 ~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~---------~~------- 465 (797)
.+..+...+. +++.....=-.+..|+.+.|-.. || .+.|++++-|=.|=+ ..
T Consensus 156 ~~~~~~~~p~----~~~~~~~~~l~~~~d~~isR~~~-----WG---~~~P~~~i~~Wfds~~~~~~~~~~~~~~~~~~~ 223 (312)
T cd00668 156 ALRRGKIVPE----HVKNRMEAWLESLLDWAISRQRY-----WG---TPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKD 223 (312)
T ss_pred HHhcCCcCCh----HHHHHHHHHHhCCCCeEEeccCC-----CC---CcCCcccccchhhccHHHHHHcCCCccchhhhh
Confidence 2222211000 00000000000123777777421 33 345666665511111 00
Q ss_pred --CccEEecCcccc-cchhHHHHHHHHhCCC--CCceeeeeeccCCC-ceecccccccccccCccCCCCCcchhhHHHHH
Q 003764 466 --NITHSLCTLEFE-TRRASYFWLLHALGLY--QPYVWEYSRLNVSN-TVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLR 539 (797)
Q Consensus 466 --gITHvlRG~E~~-~~t~~q~~L~~aLg~~--~P~~~~f~~Ln~~g-~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lr 539 (797)
..+--+=|.|.. .+.........+++.+ ...+|.|++++.+| .|||||+|+ ..++..+.
T Consensus 224 ~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn---------------~v~~~d~~ 288 (312)
T cd00668 224 SYPADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGN---------------VIDPSDVV 288 (312)
T ss_pred cCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCC---------------cCCHHHHH
Confidence 122222355555 3434344444566643 33566678887777 999999998 46788888
Q ss_pred HcCCChHHHHHHHHHhC
Q 003764 540 RRGVTSTSINAFVQGIG 556 (797)
Q Consensus 540 rrG~~PeAI~~fl~~lG 556 (797)
+. +.|+|+|.|++..+
T Consensus 289 ~~-~~~da~R~~l~~~~ 304 (312)
T cd00668 289 EK-YGADALRYYLTSLA 304 (312)
T ss_pred HH-cCcHHHHHHHHhcC
Confidence 77 99999999998765
No 48
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.33 E-value=4.7e-11 Score=130.66 Aligned_cols=94 Identities=17% Similarity=0.201 Sum_probs=74.4
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCch-------------hchHHHHHHHHHHHHHc
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWM 336 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~-----~~G~~iLRidDtDp~-------------re~~e~~~~I~e~L~wL 336 (797)
++|==+|.|||.+||||+++.++.+.++|. +...|+..+||.+.. .-...+.+.|.+++++|
T Consensus 3 ~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 82 (319)
T cd00814 3 LITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWL 82 (319)
T ss_pred EEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 344557999999999999999999998883 345677788888633 33567889999999999
Q ss_pred CCCCCcccCCch--hHHHHHHHHHHHHHcCcccc
Q 003764 337 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 337 Gl~pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~ 368 (797)
|+.+|..++.++ +.+...+..++|.++|.+|.
T Consensus 83 gI~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~ 116 (319)
T cd00814 83 NISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYE 116 (319)
T ss_pred CCcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 999986555444 66667788899999999984
No 49
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.26 E-value=8.5e-11 Score=136.90 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=75.6
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCch-------------hchHHHHHHHHHHHHHc
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWM 336 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~-----~~G~~iLRidDtDp~-------------re~~e~~~~I~e~L~wL 336 (797)
++|--+|.|||.+||||+++.+..+.+||. +...|+.-+||.+.. .....+.+.|.+++++|
T Consensus 2 ~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 81 (530)
T TIGR00398 2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWL 81 (530)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 567789999999999999999999999873 334577777776532 33567889999999999
Q ss_pred CCCCCcccCCch--hHHHHHHHHHHHHHcCcccc
Q 003764 337 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 337 Gl~pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~ 368 (797)
|+.+|..++.++ |.+...+...+|.++|++|.
T Consensus 82 gI~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~ 115 (530)
T TIGR00398 82 NISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYE 115 (530)
T ss_pred CCCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999986554444 77778888999999999883
No 50
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.25 E-value=2.8e-11 Score=125.54 Aligned_cols=163 Identities=14% Similarity=0.066 Sum_probs=104.9
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCchh-------------chHHHHHHHHHHHHHcCCCC
Q 003764 279 FPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPEA-------------EKKEYIDHIEEIVQWMGWEP 340 (797)
Q Consensus 279 FaPsPtG~LHIGharaal~n~~~Ar-----~~~G~~iLRidDtDp~r-------------e~~e~~~~I~e~L~wLGl~p 340 (797)
..|+|+|++||||+|+.++.+.+|| .+...|+..+||.+.+- -...+.+.+.++++.||+.+
T Consensus 26 ~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l~i~~ 105 (213)
T cd00672 26 CGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKALNVLP 105 (213)
T ss_pred eCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4799999999999999999999998 34568999999998542 12345555555556666554
Q ss_pred -CcccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEe
Q 003764 341 -FKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQ 419 (797)
Q Consensus 341 -d~~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~ 419 (797)
|..+++ .--.|+ .|
T Consensus 106 ~d~~~rt--------------------Wh~ec~-----------------------------am---------------- 120 (213)
T cd00672 106 PDVVPRV--------------------WHIECS-----------------------------AM---------------- 120 (213)
T ss_pred CCcceee--------------------hhHHHH-----------------------------HH----------------
Confidence 333333 000000 01
Q ss_pred cCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCceee
Q 003764 420 DMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWE 499 (797)
Q Consensus 420 d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~~ 499 (797)
-+-.|...+|-|..|+.|+. .|+.+...|... ..|-+.+..|.
T Consensus 121 --------------------------------~~~~lg~~~dih~~G~Dl~f---pH~~~~~a~~~a--~~g~~~~~~~~ 163 (213)
T cd00672 121 --------------------------------AMKYLGETFDIHGGGVDLIF---PHHENEIAQSEA--ATGKPFARYWL 163 (213)
T ss_pred --------------------------------HHHHcCCCccEEeecCCCCc---ChHHHHHHHHHH--HhCCCCCcEEE
Confidence 00011112444555666654 355555444321 12445677787
Q ss_pred e-eeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCC
Q 003764 500 Y-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR 559 (797)
Q Consensus 500 f-~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~ 559 (797)
+ +.++.+|.|||||+|+ ..++..+.+. +.|+|+|.|++...+..
T Consensus 164 h~~~v~~~g~KMSKs~Gn---------------~v~~~dll~~-~~~da~R~~~l~~~~~~ 208 (213)
T cd00672 164 HTGHLTIDGEKMSKSLGN---------------FITVRDALKK-YDPEVLRLALLSSHYRS 208 (213)
T ss_pred EEEEEeccCcchhhcCCC---------------ccCHHHHHHH-cCHHHHHHHHHhCCcCC
Confidence 6 5689999999999998 4688888875 99999999988766554
No 51
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.15 E-value=1.7e-09 Score=129.52 Aligned_cols=94 Identities=19% Similarity=0.140 Sum_probs=72.3
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCC---EEEEEeecC-------------CchhchHHHHHHHHHHHHHc
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGG---YCYLRYDDT-------------NPEAEKKEYIDHIEEIVQWM 336 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~--~~G---~~iLRidDt-------------Dp~re~~e~~~~I~e~L~wL 336 (797)
++|==+|.|||.+||||+++.+..+.+||. ..| .|+.-.|+. +|......|.+.+.+++++|
T Consensus 5 ~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 84 (673)
T PRK00133 5 LVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGF 84 (673)
T ss_pred EEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 445557899999999999999999999983 334 444444432 23334567999999999999
Q ss_pred CCCCCcccCCc--hhHHHHHHHHHHHHHcCcccc
Q 003764 337 GWEPFKITYTS--DYFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 337 Gl~pd~~~~qS--d~~~~~ye~a~~LI~~G~AY~ 368 (797)
|+.+|..++.+ +|.+...+...+|+++|.+|.
T Consensus 85 ~i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~ 118 (673)
T PRK00133 85 GISFDNYGSTHSEENRELAQEIYLKLKENGYIYE 118 (673)
T ss_pred CCCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEE
Confidence 99998755554 588888899999999999884
No 52
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.14 E-value=2.9e-10 Score=124.32 Aligned_cols=93 Identities=23% Similarity=0.272 Sum_probs=67.6
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCchh-------------chHHHHHHHHHHHHHcC
Q 003764 276 LTRFPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPEA-------------EKKEYIDHIEEIVQWMG 337 (797)
Q Consensus 276 ~tRFaPsPtG~LHIGharaal~n~~~Ar-----~~~G~~iLRidDtDp~r-------------e~~e~~~~I~e~L~wLG 337 (797)
+|==+|.|||.+||||+++.+..+.+|| ++...|+.-+||.+..- -...+.+.+.++++.||
T Consensus 4 it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lg 83 (314)
T cd00812 4 ILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMG 83 (314)
T ss_pred EecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 3444799999999999999999888887 34557888899987432 24678899999999999
Q ss_pred CCCCc--ccCC-ch-hHHHHHHHHHHHHHcCcccc
Q 003764 338 WEPFK--ITYT-SD-YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 338 l~pd~--~~~q-Sd-~~~~~ye~a~~LI~~G~AY~ 368 (797)
+.+|- .... +. +.+.......+|.++|++|.
T Consensus 84 i~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~ 118 (314)
T cd00812 84 FSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYK 118 (314)
T ss_pred cceecccccccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 98762 2222 22 22222234459999999984
No 53
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.14 E-value=4.8e-10 Score=131.35 Aligned_cols=94 Identities=20% Similarity=0.199 Sum_probs=75.5
Q ss_pred EEEEeCCCCCCcCchhHHHHH-HHHHHHHHH-----cCCEEEEEeecCCch-------------hchHHHHHHHHHHHHH
Q 003764 275 VLTRFPPEPNGYLHIGHAKAM-FVDFGLAKE-----RGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQW 335 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaa-l~n~~~Ar~-----~~G~~iLRidDtDp~-------------re~~e~~~~I~e~L~w 335 (797)
++|==+|.|||.|||||+++. +..+.+||. +...|+.-+||.+.. .....+.+.|.++++.
T Consensus 6 ~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 85 (556)
T PRK12268 6 LITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKK 85 (556)
T ss_pred EEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 455568999999999999998 888888873 345666677776532 2246788999999999
Q ss_pred cCCCCCcccCCc--hhHHHHHHHHHHHHHcCcccc
Q 003764 336 MGWEPFKITYTS--DYFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 336 LGl~pd~~~~qS--d~~~~~ye~a~~LI~~G~AY~ 368 (797)
||+.+|..++++ +|.+...+...+|.++|++|.
T Consensus 86 l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~ 120 (556)
T PRK12268 86 LGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYK 120 (556)
T ss_pred cCCcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEE
Confidence 999999776777 788888899999999999984
No 54
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.13 E-value=6e-10 Score=129.22 Aligned_cols=251 Identities=16% Similarity=0.182 Sum_probs=146.7
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCchh----------------------------
Q 003764 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEA---------------------------- 320 (797)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~~~Ar~-----~~G~~iLRidDtDp~r---------------------------- 320 (797)
.++.-=+.+|||.+||||++.++..+.++|. +...|+.=-||.|+-|
T Consensus 24 ~~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G 103 (510)
T PRK00750 24 PVVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFG 103 (510)
T ss_pred cEEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCC
Confidence 3777778899999999999999998888873 4557888889998522
Q ss_pred ----chHHHHHHHHHHHHHcCCCCCcc----cCCchhHHHHHHHHHH-HHHcCccccCCCCHHHHHHHhccCCCCCCC-C
Q 003764 321 ----EKKEYIDHIEEIVQWMGWEPFKI----TYTSDYFQELYELAVE-LIRRGHAYVDHQTPEEIKEYREKKMNSPWR-D 390 (797)
Q Consensus 321 ----e~~e~~~~I~e~L~wLGl~pd~~----~~qSd~~~~~ye~a~~-LI~~G~AY~C~cs~eel~~~r~~~~~~~~R-~ 390 (797)
....|...+.+.++.+|++++-+ .|.|..|. +.+.. |-+++... +-|...++...+..|- -
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~---~~i~~~l~~~~~i~------~il~~~~~~~~~~~~~P~ 174 (510)
T PRK00750 104 CHESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYD---EAILTALENRDEIM------EILLPYLGEERQATYSPF 174 (510)
T ss_pred CchHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchH---HHHHHHHHhHHHHH------HHHHHhcCCccCCCeeee
Confidence 23456677788899999987732 23333322 22222 22222221 2333333311110000 0
Q ss_pred CChHHHhHHHHHhhcCcccCCceEEEE-EecCCCCCCCcCccEEEEEecCCCC-----CCCC---cccc-cccccccchh
Q 003764 391 RPIAESLKLFEDMRNGRIEEGKATLRM-KQDMQNDNFNMYDLIAYRIKFTPHP-----HAGD---KWCI-YPSYDYAHCI 460 (797)
Q Consensus 391 ~s~ee~l~~fe~m~~G~~~~g~~~lR~-K~d~~~~~~~~~D~V~~r~~~~~h~-----~~gd---~~~~-~PtY~fA~~V 460 (797)
+++.++ -|+. .+..+ ..|.+ ..-|-|++. .+|. +.|. .|++ ||+=
T Consensus 175 ~pic~~--------cg~~----~~~~~~~~d~~------~~~v~y~~~-cG~~~~~~~~~g~~KL~Wr~dW~~r------ 229 (510)
T PRK00750 175 LPICPK--------CGKV----LTTPVISYDAE------AGTVTYDCE-CGHEGEVPVTGGHGKLQWKVDWPMR------ 229 (510)
T ss_pred eeeCCC--------CCcc----ceEEEEEEeCC------CCEEEEEcC-CCCEEEEecCCCCcccCCCCCcHHH------
Confidence 011000 0111 01111 11211 012444332 2221 1111 2432 2221
Q ss_pred hhccCCccEEecCccccc-chhHHHHHHH-HhCCCCCceeeeeeccCC-CceecccccccccccCccCCCCCcchhhHHH
Q 003764 461 VDSIENITHSLCTLEFET-RRASYFWLLH-ALGLYQPYVWEYSRLNVS-NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAG 537 (797)
Q Consensus 461 DD~~~gITHvlRG~E~~~-~t~~q~~L~~-aLg~~~P~~~~f~~Ln~~-g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~ 537 (797)
=...||+..+.|.||.. +...+..+++ .||...|...+|+++..+ |.|||||+|+ ..++..
T Consensus 230 -W~~l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G~KMSKSkGN---------------~i~~~d 293 (510)
T PRK00750 230 -WAALGVDFEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKGEKISKSKGN---------------VITIED 293 (510)
T ss_pred -HHHcCCCEEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCCCcccccCCC---------------ccCHHH
Confidence 02368999999999999 9999999999 999999988889887776 9999999998 356777
Q ss_pred HHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhh
Q 003764 538 LRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 577 (797)
Q Consensus 538 lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~ 577 (797)
+.+. ++|++++.|+....-...+..+++ |..+...|.
T Consensus 294 ~l~~-~~pd~lR~~l~~~~~~~~~~~f~~--l~~~~dey~ 330 (510)
T PRK00750 294 WLEY-APPESLRLFMFARPKPAKRLDFDV--IPKLVDEYD 330 (510)
T ss_pred HHHH-CCHHHHHHHHHhCCCCCCCCcccH--HHHHHHHHH
Confidence 7766 999999988764332222333443 555555443
No 55
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.12 E-value=2.5e-09 Score=127.70 Aligned_cols=94 Identities=22% Similarity=0.214 Sum_probs=73.3
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCC---EEEEEeecCCch-------------hchHHHHHHHHHHHHHc
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGG---YCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWM 336 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~--~~G---~~iLRidDtDp~-------------re~~e~~~~I~e~L~wL 336 (797)
++|==.|.|||.+||||+++.+..+.++|. ..| .|+.-.||.+.. .....+.+.|.+++++|
T Consensus 7 ~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~l 86 (648)
T PRK12267 7 YITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKL 86 (648)
T ss_pred EEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 556667999999999999999999999883 334 565566655532 23567889999999999
Q ss_pred CCCCCcccCCch--hHHHHHHHHHHHHHcCcccc
Q 003764 337 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 337 Gl~pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~ 368 (797)
|+.+|..++.++ |.....+...+|.++|++|.
T Consensus 87 gI~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~ 120 (648)
T PRK12267 87 DISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYK 120 (648)
T ss_pred CCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999998776665 65556677889999999884
No 56
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.11 E-value=1.4e-09 Score=120.09 Aligned_cols=91 Identities=22% Similarity=0.234 Sum_probs=71.5
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeec----CCch--------------------------hchHH
Q 003764 280 PPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDD----TNPE--------------------------AEKKE 324 (797)
Q Consensus 280 aPsPtG~LHIGharaal~n~~~Ar~-----~~G~~iLRidD----tDp~--------------------------re~~e 324 (797)
||+|||.+||||+++.++.+.++|. +...|+..+|| ++.. .-..+
T Consensus 9 pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (338)
T cd00818 9 PPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKCREFALR 88 (338)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHHHHHHHH
Confidence 8999999999999999998888883 34567777777 4321 11236
Q ss_pred HHHHHHHHHHHcCC--CCCc--ccCCchhHHHHHHHHHHHHHcCccccCC
Q 003764 325 YIDHIEEIVQWMGW--EPFK--ITYTSDYFQELYELAVELIRRGHAYVDH 370 (797)
Q Consensus 325 ~~~~I~e~L~wLGl--~pd~--~~~qSd~~~~~ye~a~~LI~~G~AY~C~ 370 (797)
+.+.|.++++.||+ .|+. .|...+|.+...+...+|+++|++|.-.
T Consensus 89 ~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~ 138 (338)
T cd00818 89 YVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGY 138 (338)
T ss_pred HHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccC
Confidence 77899999999999 5654 4566688888889999999999999643
No 57
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.09 E-value=4.6e-09 Score=116.46 Aligned_cols=236 Identities=17% Similarity=0.226 Sum_probs=139.2
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCchhc--------------------------
Q 003764 273 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPEAE-------------------------- 321 (797)
Q Consensus 273 g~v~tRFaPsPtG~LHIGharaal~n~~~Ar-----~~~G~~iLRidDtDp~re-------------------------- 321 (797)
.+++.-=+++|||.+||||++..+..+.+|| .+...|+.-.||-|+-|.
T Consensus 19 ~~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~ 98 (353)
T cd00674 19 EKYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGC 98 (353)
T ss_pred CeEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCC
Confidence 3566666889999999999999988888887 355678888898876322
Q ss_pred ----hHHHHHHHHHHHHHcCCCCCcccCCchhHHHHH-HHHH-HHHHcCccccCCCCHHHHHHHhccCCCCCCC-CCChH
Q 003764 322 ----KKEYIDHIEEIVQWMGWEPFKITYTSDYFQELY-ELAV-ELIRRGHAYVDHQTPEEIKEYREKKMNSPWR-DRPIA 394 (797)
Q Consensus 322 ----~~e~~~~I~e~L~wLGl~pd~~~~qSd~~~~~y-e~a~-~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R-~~s~e 394 (797)
...+...+.+.|+.||+..+-+..+..|-...+ +.+. .|.+.+... +-|...++...+..|- -.++.
T Consensus 99 ~~~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~~~L~~~~~I~------~i~~~~~~~~~~~~~~P~~p~c 172 (353)
T cd00674 99 CESYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENILIALEKRDEIM------AILNEYRGRELQETWYPFMPYC 172 (353)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHHHHHHHCChHH------HHHHHhcCCccCCCceeeeeec
Confidence 346677788889999999874333333333222 3222 344455432 3344444321111000 01111
Q ss_pred HHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCC-----CCCC---cccc-cccccccchhhhccC
Q 003764 395 ESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHP-----HAGD---KWCI-YPSYDYAHCIVDSIE 465 (797)
Q Consensus 395 e~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~-----~~gd---~~~~-~PtY~fA~~VDD~~~ 465 (797)
++ -|... ..++ ..+.+ ..-|-|++. ..|. +.|. .|++ ||+== ...
T Consensus 173 ~~--------cg~~~--~~v~--~~d~~------~~~v~y~c~-cG~~g~~~~~~g~~KL~Wr~dW~~rW-------~~l 226 (353)
T cd00674 173 EK--------CGKDT--TTVE--AYDAK------AGTVTYKCE-CGHEETVDIRTGRGKLTWRVDWPMRW-------AIL 226 (353)
T ss_pred CC--------cCcce--eEEE--EEeCC------CCeEEEEcC-CCCEEEEeecCCCcccCCCCCchhhh-------hhc
Confidence 00 01100 0000 11110 112555542 2221 1111 2432 33211 235
Q ss_pred CccEEecCcccccc---hhHHHHHHH-HhCCCCCceeeeeeccCCCc-eecccccccccccCccCCCCCcchhhHHHHHH
Q 003764 466 NITHSLCTLEFETR---RASYFWLLH-ALGLYQPYVWEYSRLNVSNT-VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRR 540 (797)
Q Consensus 466 gITHvlRG~E~~~~---t~~q~~L~~-aLg~~~P~~~~f~~Ln~~g~-kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrr 540 (797)
||+-=+=|.||..+ -..-..+++ .||...|....|+.+...|. |||||+|+ ..++..+.+
T Consensus 227 ~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V~l~gg~KMSKSkGn---------------vI~~~dll~ 291 (353)
T cd00674 227 GVDFEPFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFIGLKGGGKMSSSKGN---------------VITPSDWLE 291 (353)
T ss_pred CCCEEeeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeEEeCCCCccCCCCCC---------------cCCHHHHHH
Confidence 67776779999888 555566777 99998887777777777665 99999998 468888888
Q ss_pred cCCChHHHHHHHHHhC
Q 003764 541 RGVTSTSINAFVQGIG 556 (797)
Q Consensus 541 rG~~PeAI~~fl~~lG 556 (797)
. +.|++++.|+++..
T Consensus 292 ~-~~~dalR~~~l~~~ 306 (353)
T cd00674 292 V-APPEVLRYLYARRK 306 (353)
T ss_pred H-hChHHHHHHHHhCC
Confidence 7 99999999988765
No 58
>PLN02224 methionine-tRNA ligase
Probab=99.07 E-value=2.8e-09 Score=125.93 Aligned_cols=94 Identities=16% Similarity=0.045 Sum_probs=73.1
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCc-------------hhchHHHHHHHHHHHHHc
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNP-------------EAEKKEYIDHIEEIVQWM 336 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~-----~~G~~iLRidDtDp-------------~re~~e~~~~I~e~L~wL 336 (797)
++|==+|.|||.+|||||++.++.+.+||. +...|+.-+||.+. ..-..++.+.+.+.+++|
T Consensus 72 ~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 151 (616)
T PLN02224 72 VLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKDL 151 (616)
T ss_pred EEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Confidence 677778899999999999999999999984 33456666676652 223456778888999999
Q ss_pred CCCCCcccCCch--hHHHHHHHHHHHHHcCcccc
Q 003764 337 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 337 Gl~pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~ 368 (797)
|+.+|..+++++ |.....+...+|.++|+.|.
T Consensus 152 ~I~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~ 185 (616)
T PLN02224 152 DIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYR 185 (616)
T ss_pred CCCCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999998766665 55566677789999999874
No 59
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=98.84 E-value=9.1e-09 Score=115.55 Aligned_cols=93 Identities=25% Similarity=0.262 Sum_probs=65.1
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCch---------h-----------------------c
Q 003764 276 LTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE---------A-----------------------E 321 (797)
Q Consensus 276 ~tRFaPsPtG~LHIGharaal~n~~~Ar~--~~G~~iLRidDtDp~---------r-----------------------e 321 (797)
+|==+|.|||.|||||+++.++.+.+||. ..|.-++.+--+|.- + -
T Consensus 5 i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~ 84 (382)
T cd00817 5 IDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEW 84 (382)
T ss_pred EecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHH
Confidence 33347999999999999999999999983 345544444444420 0 1
Q ss_pred hHHHHHHHHHHHHHcCCCCC--ccc--CCchhHHHHHHHHHHHHHcCcccc
Q 003764 322 KKEYIDHIEEIVQWMGWEPF--KIT--YTSDYFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 322 ~~e~~~~I~e~L~wLGl~pd--~~~--~qSd~~~~~ye~a~~LI~~G~AY~ 368 (797)
..++.+.+.++++.||+..| ..+ ...+|.+.......+|.++|++|.
T Consensus 85 ~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 135 (382)
T cd00817 85 KEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYR 135 (382)
T ss_pred HHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 24578889999999998644 543 333454555566689999999885
No 60
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=98.83 E-value=4.5e-08 Score=110.35 Aligned_cols=101 Identities=20% Similarity=0.165 Sum_probs=66.1
Q ss_pred hccCCccEEecCccccc-chhHHHHHHHHhCCCCCceee-eeeccCCCceecccccccccccCccCCCCCcchhhHHHHH
Q 003764 462 DSIENITHSLCTLEFET-RRASYFWLLHALGLYQPYVWE-YSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLR 539 (797)
Q Consensus 462 D~~~gITHvlRG~E~~~-~t~~q~~L~~aLg~~~P~~~~-f~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lr 539 (797)
|....+.|+| |.|..- ++...-.++-++|++.|.... ++++.++|.|||||.++. .....+.
T Consensus 279 ~~~~~~v~~i-GkDi~~fH~i~~pa~l~a~~~~lP~~i~~~~~~~~~g~K~SkS~gn~---------------i~~~~~~ 342 (391)
T PF09334_consen 279 DSDVEIVHFI-GKDIIRFHAIYWPAMLLAAGLPLPRRIVVHGFLTLDGEKMSKSRGNV---------------IWPDDLL 342 (391)
T ss_dssp T--SEEEEEE-EGGGHHHHHTHHHHHHHHCTB---SEEEEE--EEETTCCEETTTTES---------------SBHHHHH
T ss_pred cCCceEEEEE-ccchhHHHHHHhHHHHhcccCCCCCEEEeeeeEEECCeeccccCCcc---------------cCHHHHH
Confidence 4445577876 777643 223333455678888886443 467899999999999873 3566777
Q ss_pred HcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhhhc
Q 003764 540 RRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNK 579 (797)
Q Consensus 540 rrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~ 579 (797)
++ ++++++|.||+..+.-..+..++++.+.+.+...+..
T Consensus 343 ~~-~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~ 381 (391)
T PF09334_consen 343 EE-YGADALRYYLAREGPEGQDSDFSWEDFIERVNNELAN 381 (391)
T ss_dssp HH-H-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCC
T ss_pred Hh-CChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 76 9999999999999887778889988887777666543
No 61
>PLN02610 probable methionyl-tRNA synthetase
Probab=98.81 E-value=2.8e-07 Score=112.10 Aligned_cols=93 Identities=18% Similarity=0.183 Sum_probs=67.0
Q ss_pred EEEEeCCCCCCcCchhHHHH-HHHHHHHHHH--cCCEEEEEeecCC----------------chhchHHHHHHHHHHHHH
Q 003764 275 VLTRFPPEPNGYLHIGHAKA-MFVDFGLAKE--RGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQW 335 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGhara-al~n~~~Ar~--~~G~~iLRidDtD----------------p~re~~e~~~~I~e~L~w 335 (797)
++|==.|.|||.|||||++. .+..+.+||. ..|.=++-+.-|| |..-...+.+.+.+.++|
T Consensus 20 ~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~ 99 (801)
T PLN02610 20 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDW 99 (801)
T ss_pred EEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 56667899999999999995 5668999984 3565555555555 222344666777888999
Q ss_pred cCCCCCcccCCc--hhHHHHHHHHHHHHHcCccc
Q 003764 336 MGWEPFKITYTS--DYFQELYELAVELIRRGHAY 367 (797)
Q Consensus 336 LGl~pd~~~~qS--d~~~~~ye~a~~LI~~G~AY 367 (797)
||+.+|..++.+ .|.....+...+|.++|+.|
T Consensus 100 l~i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy 133 (801)
T PLN02610 100 FDISFDKFGRTSTPQQTEICQAIFKKLMENNWLS 133 (801)
T ss_pred cCCccccCccCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 999999765444 24444456667899999976
No 62
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=7.7e-08 Score=112.10 Aligned_cols=94 Identities=20% Similarity=0.285 Sum_probs=72.0
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCC----------------chhchHHHHHHHHHHHHHc
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQWM 336 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar--~~~G~~iLRidDtD----------------p~re~~e~~~~I~e~L~wL 336 (797)
++|==-|.|||.+||||+.+.+..+.+|| +..|.=++=+.-|| |+.-..++.+.+.++++||
T Consensus 8 ~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l 87 (558)
T COG0143 8 LVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKAL 87 (558)
T ss_pred EEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 56666799999999999999999999999 34675555555555 2333557788899999999
Q ss_pred CCCCCcc--cCCchhHHHHHHHHHHHHHcCcccc
Q 003764 337 GWEPFKI--TYTSDYFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 337 Gl~pd~~--~~qSd~~~~~ye~a~~LI~~G~AY~ 368 (797)
+|..|.- |.++.|.+.-.+...+|.++|..|.
T Consensus 88 ~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~ 121 (558)
T COG0143 88 NISFDNFIRTTSPEHKELVQEFFLKLYENGDIYL 121 (558)
T ss_pred CCcccccccCCCHHHHHHHHHHHHHHHHCCCEec
Confidence 9999863 4444555556677789999999774
No 63
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=98.69 E-value=1.4e-07 Score=101.79 Aligned_cols=171 Identities=20% Similarity=0.150 Sum_probs=119.2
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-------CchhchHHHHHHHHHHHHHcCCCCCc--ccCCchhHHH
Q 003764 282 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQE 352 (797)
Q Consensus 282 sPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDt-------Dp~re~~e~~~~I~e~L~wLGl~pd~--~~~qSd~~~~ 352 (797)
.|||.|||||...|+.++...+..|..+++.|.|. +..++..++...+..++.++|++|++ +.+||++. .
T Consensus 7 ~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~-~ 85 (280)
T cd00806 7 QPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQSDVP-E 85 (280)
T ss_pred CCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEcCCcH-H
Confidence 58999999999999999999998899999999998 45677788889999999999999964 67899886 4
Q ss_pred HHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccE
Q 003764 353 LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI 432 (797)
Q Consensus 353 ~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V 432 (797)
+++.+- .+.|.|+..++.+. ..+ ++ +..+ . .+.+
T Consensus 86 ~~~l~~-------~l~~~~~~~~l~r~--~~f----k~------------~~~~-------------~-~~~~------- 119 (280)
T cd00806 86 HYELAW-------LLSCVVTFGELERM--TGF----KD------------KSAQ-------------G-ESVN------- 119 (280)
T ss_pred HHHHHH-------HHhCcCCHHHHHhc--cch----hh------------hhcc-------------C-CCCc-------
Confidence 555432 26899998888542 111 10 0000 0 0000
Q ss_pred EEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhC------CCCCceeee--eec-
Q 003764 433 AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWEY--SRL- 503 (797)
Q Consensus 433 ~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg------~~~P~~~~f--~~L- 503 (797)
++. ..||.-+=| |=.+.+.++|..|.|-..+-..-.-+.+.++ +..|...+. +++
T Consensus 120 ~g~-------------~~YP~lqaa---Dil~~~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~ 183 (280)
T cd00806 120 IGL-------------LTYPVLQAA---DILLYKACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLP 183 (280)
T ss_pred chh-------------hcchHHHHh---hhhhccCCEEeeccccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccc
Confidence 000 113433322 2234566899999999888888888888888 667765544 443
Q ss_pred cCCC--ceeccccc
Q 003764 504 NVSN--TVMSKRKL 515 (797)
Q Consensus 504 n~~g--~kLSKRk~ 515 (797)
..+| .|||||.+
T Consensus 184 ~l~g~~~KMSKS~~ 197 (280)
T cd00806 184 GLQGPSKKMSKSDP 197 (280)
T ss_pred cCCCCCCcccCCCC
Confidence 5665 59999987
No 64
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.66 E-value=5.1e-07 Score=104.87 Aligned_cols=95 Identities=14% Similarity=0.107 Sum_probs=66.8
Q ss_pred CCccEEecCcccccchhHH---HHHH-HHhCCCCCc--eeeeeeccCCCceecccccccccccCccCCCCCcchhhHHHH
Q 003764 465 ENITHSLCTLEFETRRASY---FWLL-HALGLYQPY--VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGL 538 (797)
Q Consensus 465 ~gITHvlRG~E~~~~t~~q---~~L~-~aLg~~~P~--~~~f~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~l 538 (797)
.|||-=--|.||..+..+| ..++ ++||.+.|. .+++-||..+|.|||||+|+ ..|++.+
T Consensus 224 lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~v~L~~~g~KMSKS~Gn---------------~itl~dl 288 (515)
T TIGR00467 224 EKVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEWISLKGKGGKMSSSKGD---------------VISVKDV 288 (515)
T ss_pred hCcccccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEEEEEcCCCccccCCCCC---------------CccHHHH
Confidence 4555555688888866433 3455 489887774 44455677788999999998 5799999
Q ss_pred HHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhh
Q 003764 539 RRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 577 (797)
Q Consensus 539 rrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~ 577 (797)
.+. +.|++++.|+++-.... .-.++++.| ++...|.
T Consensus 289 l~~-~~pdalR~~~l~~~~~~-~ldFd~~~l-~~~dey~ 324 (515)
T TIGR00467 289 LEV-YTPEITRFLFARTKPEF-HISFDLDVI-KLYEDYD 324 (515)
T ss_pred HHH-cCHHHHHHHHhccCCCC-CCcCCHHHH-HHHHHHH
Confidence 987 99999999876655443 335666666 6655554
No 65
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=98.60 E-value=5.9e-07 Score=105.80 Aligned_cols=55 Identities=18% Similarity=0.149 Sum_probs=41.5
Q ss_pred cCcccccchhHHHHHHHHhCCCCCc-eee--eeeccCCCceecccccccccccCccCCCCCcchhhHHHHHHc
Q 003764 472 CTLEFETRRASYFWLLHALGLYQPY-VWE--YSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR 541 (797)
Q Consensus 472 RG~E~~~~t~~q~~L~~aLg~~~P~-~~~--f~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrr 541 (797)
-|.|+..+-.+-..+.++||+..+. .-| |+.++.+|.|||||+|. ..+|..|.+.
T Consensus 331 ~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~~~g~kmStR~G~---------------~v~l~dLlde 388 (562)
T PRK12451 331 VGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLILKDGKKMSTRKGR---------------VVLLEEVLEE 388 (562)
T ss_pred eCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeEecCCCCCcCCCCC---------------eeEHHHHHHH
Confidence 4788888888778888999986443 222 56778889999999997 3578887764
No 66
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=98.56 E-value=6.5e-07 Score=105.56 Aligned_cols=46 Identities=22% Similarity=0.251 Sum_probs=35.9
Q ss_pred cCcccccchhHHHHHHHHhCCCCCc-eeeeeeccCCCceeccccccc
Q 003764 472 CTLEFETRRASYFWLLHALGLYQPY-VWEYSRLNVSNTVMSKRKLNF 517 (797)
Q Consensus 472 RG~E~~~~t~~q~~L~~aLg~~~P~-~~~f~~Ln~~g~kLSKRk~~~ 517 (797)
-|.|+..+-.+-..+..+||++.|. .-|+++--+.+.+||||+|+.
T Consensus 334 ~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~V~~~kmSkr~Gn~ 380 (566)
T TIGR00456 334 WGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGMVPLGSMKTRRGNV 380 (566)
T ss_pred ecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEEEECCCCCccCCce
Confidence 5888888888888888999997774 445566555678999999973
No 67
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=98.42 E-value=3e-06 Score=103.86 Aligned_cols=94 Identities=20% Similarity=0.179 Sum_probs=66.1
Q ss_pred EEEEe-CCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC-----------------ch------------hch
Q 003764 275 VLTRF-PPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN-----------------PE------------AEK 322 (797)
Q Consensus 275 v~tRF-aPsPtG~LHIGharaal~n~~~Ar~--~~G~~iLRidDtD-----------------p~------------re~ 322 (797)
++.=. +|.|||.|||||+++.++.+.+||. ..|.-++.+-.+| +. .-.
T Consensus 40 f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~ 119 (800)
T PRK13208 40 YSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELT 119 (800)
T ss_pred EEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHH
Confidence 33344 8999999999999999999999984 4676666644444 22 134
Q ss_pred HHHHHHHHHHHHHcCCC--CCcccCCch--hHHHHHHHHHHHHHcCcccc
Q 003764 323 KEYIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 323 ~e~~~~I~e~L~wLGl~--pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~ 368 (797)
.++.+.|.++++.||+. |+..+++++ |.........+|.++|++|.
T Consensus 120 ~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 169 (800)
T PRK13208 120 DEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYR 169 (800)
T ss_pred HHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeee
Confidence 46789999999999985 445444443 33333344568999999874
No 68
>PLN02286 arginine-tRNA ligase
Probab=98.34 E-value=6.8e-06 Score=97.16 Aligned_cols=42 Identities=26% Similarity=0.441 Sum_probs=33.2
Q ss_pred CeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEee
Q 003764 273 GNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYD 314 (797)
Q Consensus 273 g~v~tRF-aPsPtG~LHIGharaal~n~~~Ar--~~~G~~iLRid 314 (797)
.+|+.=| +|+|||+|||||+|++++-..+|| .+-|.=+.|.-
T Consensus 117 ~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~n 161 (576)
T PLN02286 117 KRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRN 161 (576)
T ss_pred ceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEE
Confidence 4688888 999999999999999999988888 33454444433
No 69
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=98.32 E-value=2.9e-05 Score=96.06 Aligned_cols=93 Identities=27% Similarity=0.315 Sum_probs=67.8
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCch------------------h--------------c
Q 003764 276 LTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE------------------A--------------E 321 (797)
Q Consensus 276 ~tRFaPsPtG~LHIGharaal~n~~~Ar--~~~G~~iLRidDtDp~------------------r--------------e 321 (797)
++==||.+||.|||||+++.++.+.+|| ...|.-++.+-.+|.. + .
T Consensus 37 i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~ 116 (861)
T TIGR00422 37 IDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEW 116 (861)
T ss_pred EEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHH
Confidence 3334899999999999999999999998 4578877777777621 0 1
Q ss_pred hHHHHHHHHHHHHHcCCC--CCcccCCch--hHHHHHHHHHHHHHcCcccc
Q 003764 322 KKEYIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 322 ~~e~~~~I~e~L~wLGl~--pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~ 368 (797)
..+|...|.+.++.||+. |+..+++.+ |.........+|-++|+.|.
T Consensus 117 ~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~ 167 (861)
T TIGR00422 117 KEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYR 167 (861)
T ss_pred HHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeee
Confidence 356788999999999965 555554443 33333344568999999884
No 70
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=3.9e-06 Score=92.86 Aligned_cols=275 Identities=19% Similarity=0.194 Sum_probs=146.6
Q ss_pred CCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCch------------hchHHHHHHHHHH----HHHcCCCCCcc
Q 003764 282 EPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE------------AEKKEYIDHIEEI----VQWMGWEPFKI 343 (797)
Q Consensus 282 sPtG~LHIGharaal~n~~~Ar~--~~G~~iLRidDtDp~------------re~~e~~~~I~e~----L~wLGl~pd~~ 343 (797)
-||-..||||+.++++.+.+||. ..|.-+.=.+.||.- +.-+++.|.|-.. -+-+|+..+..
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt~F 128 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYTKF 128 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchhhe
Confidence 47888999999999999999984 578877778888821 2334555444433 34568887765
Q ss_pred cCCch--hHHHHHHHHHHHHHcCcccc------------CCCCHHHHHHHhcc---------CCCCCCCCCChHHH----
Q 003764 344 TYTSD--YFQELYELAVELIRRGHAYV------------DHQTPEEIKEYREK---------KMNSPWRDRPIAES---- 396 (797)
Q Consensus 344 ~~qSd--~~~~~ye~a~~LI~~G~AY~------------C~cs~eel~~~r~~---------~~~~~~R~~s~ee~---- 396 (797)
.+.++ |.....++-..+.++|..|. ||-...++.+...+ +-+..||. |+|
T Consensus 129 IRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~k---E~NY~Fr 205 (578)
T KOG0436|consen 129 IRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRK---EDNYFFR 205 (578)
T ss_pred eecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEec---ccceeee
Confidence 55554 55555566677888998874 23333334332110 01111211 111
Q ss_pred hHHHHHhhcCcccCCceEEEEEec-------CCCCCCCcCccEEEEEecCCC---CCCCCc------c----------cc
Q 003764 397 LKLFEDMRNGRIEEGKATLRMKQD-------MQNDNFNMYDLIAYRIKFTPH---PHAGDK------W----------CI 450 (797)
Q Consensus 397 l~~fe~m~~G~~~~g~~~lR~K~d-------~~~~~~~~~D~V~~r~~~~~h---~~~gd~------~----------~~ 450 (797)
|..|.+-....+...+ |+-++ ++.-...+.|+-+-|-+..-| |..||+ | .|
T Consensus 206 LSkfqk~l~d~lrkNP---~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~nYiSvig 282 (578)
T KOG0436|consen 206 LSKFQKPLEDHLRKNP---RFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNYISVIG 282 (578)
T ss_pred HHhhhhHHHHHHhcCC---CccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCCCcceEEEeHHHHhhHHHhhc
Confidence 1112111000000000 11110 000012245655544321111 222332 2 12
Q ss_pred ccc--ccccchhhhccCCccEEecCcccccchhHH-HHHHHHhCCCCCcee-eeeeccCCCceecccccccccccCccCC
Q 003764 451 YPS--YDYAHCIVDSIENITHSLCTLEFETRRASY-FWLLHALGLYQPYVW-EYSRLNVSNTVMSKRKLNFLVTNKYVDG 526 (797)
Q Consensus 451 ~Pt--Y~fA~~VDD~~~gITHvlRG~E~~~~t~~q-~~L~~aLg~~~P~~~-~f~~Ln~~g~kLSKRk~~~~v~~g~v~g 526 (797)
||- -+.-..+---.=.-.||| |.|.+---..| -.++=+-|++.|... -|+|...+|.||||+.|+..
T Consensus 283 ~~~~~~N~k~~ls~~wPat~HvI-GKDIlrFHavYWPafLmaAGlplP~~I~vHghwt~ngmKMsKSLGNvv-------- 353 (578)
T KOG0436|consen 283 YPNKQQNLKTALSFGWPATLHVI-GKDILRFHAVYWPAFLMAAGLPLPKMIFVHGHWTKNGMKMSKSLGNVV-------- 353 (578)
T ss_pred CCchhccccceeecCCCceeeeh-hhhhhhhhhhhhHHHHHhcCCCCccEEEEeeeeeecceecchhhcccc--------
Confidence 331 011111100011223766 77665333322 112235588888655 47899999999999999842
Q ss_pred CCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhhhc
Q 003764 527 WDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNK 579 (797)
Q Consensus 527 WdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~ 579 (797)
||+ .|.++ |.+.+++.|++.-|.-..+..++.+.|.......+-.
T Consensus 354 --dP~-----~l~~k-ygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~ 398 (578)
T KOG0436|consen 354 --DPF-----ELVQK-YGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLAN 398 (578)
T ss_pred --CHH-----HHHHH-hCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHH
Confidence 443 34444 8889999999988887778888888877666554443
No 71
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=5.7e-05 Score=89.02 Aligned_cols=230 Identities=18% Similarity=0.164 Sum_probs=110.7
Q ss_pred CCeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCc-hhchHHHHHHHHHHHHHcCCCCC-cccCC
Q 003764 272 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP-EAEKKEYIDHIEEIVQWMGWEPF-KITYT 346 (797)
Q Consensus 272 ~g~v~tRF-aPsPtG~LHIGharaal~n~~~Ar--~~~G~~iLRidDtDp-~re~~e~~~~I~e~L~wLGl~pd-~~~~q 346 (797)
+.+|+.=| +|+|||+|||||+|++++-..+|| ..-|-=+.|.-=+|. .+...-.+- .+...|.... .....
T Consensus 116 ~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~----~~~~~~~e~~~~~~~~ 191 (577)
T COG0018 116 GKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLAL----SYEKRGREALGLTPEP 191 (577)
T ss_pred CCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHH----HHHHhccccccCCCCc
Confidence 35788888 999999999999999999999998 223333333333331 122111111 1222222211 01111
Q ss_pred chhHHHHH-HHHHHHHHcCc-----------------cc------cCCCCHHHHHHHhc------cCC---CCCCCCCCh
Q 003764 347 SDYFQELY-ELAVELIRRGH-----------------AY------VDHQTPEEIKEYRE------KKM---NSPWRDRPI 393 (797)
Q Consensus 347 Sd~~~~~y-e~a~~LI~~G~-----------------AY------~C~cs~eel~~~r~------~~~---~~~~R~~s~ 393 (797)
-.++..+| +.+++|.+... .+ .|.-+-+.++..=. ..+ ....++-..
T Consensus 192 ~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~ 271 (577)
T COG0018 192 DGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKV 271 (577)
T ss_pred chHHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccH
Confidence 22333333 33444444322 22 11111111111000 011 112233344
Q ss_pred HHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccE--Ee
Q 003764 394 AESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITH--SL 471 (797)
Q Consensus 394 ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITH--vl 471 (797)
++.+..+++.-......|..++.+--.. ......|.|+-|. +|+- .|-|=|+|+..+=.-.|-+. -|
T Consensus 272 ~~vv~~L~~~~~~~e~~GA~~vdl~~~~--~~gd~~~~vl~KS-------DGt~--lY~t~DIAy~~~K~~~~~d~~IyV 340 (577)
T COG0018 272 EKVVEDLEEKGLLYEDDGALVVDLLKFK--KFGDDKDRVLQKS-------DGTY--LYFTRDIAYHLYKFERGFDKLIYV 340 (577)
T ss_pred HHHHHHHHhcCCEeeeCCeEEEehhhhh--hcCCCCCeEEEEc-------CCCe--eeehhHHHHHHHHHhcCCCEEEEE
Confidence 5544444432222223455444432100 1223357788776 3321 24444555544433233332 23
Q ss_pred cCcccccchhHHHHHHHHhCCCCCc-e-ee--eeec-cCCCceecccccc
Q 003764 472 CTLEFETRRASYFWLLHALGLYQPY-V-WE--YSRL-NVSNTVMSKRKLN 516 (797)
Q Consensus 472 RG~E~~~~t~~q~~L~~aLg~~~P~-~-~~--f~~L-n~~g~kLSKRk~~ 516 (797)
-|.||..+-.+-..++..+|+..+. . .| |+.+ +-+|.|||||.|.
T Consensus 341 ~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~ 390 (577)
T COG0018 341 LGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGN 390 (577)
T ss_pred eCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCc
Confidence 4888888877777777888886663 2 23 2333 4488999999997
No 72
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=98.18 E-value=2.3e-05 Score=87.44 Aligned_cols=46 Identities=33% Similarity=0.585 Sum_probs=37.3
Q ss_pred CCeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCC
Q 003764 272 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN 317 (797)
Q Consensus 272 ~g~v~tRF-aPsPtG~LHIGharaal~n~~~Ar--~~~G~~iLRidDtD 317 (797)
+.+|+.=| +|+|||+|||||+|++++-..+|| .+.|.-+.|.--+|
T Consensus 19 ~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyig 67 (354)
T PF00750_consen 19 GKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIG 67 (354)
T ss_dssp SEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEB
T ss_pred CCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEEC
Confidence 45788888 899999999999999999999999 56788888877665
No 73
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.15 E-value=1.4e-05 Score=88.70 Aligned_cols=245 Identities=20% Similarity=0.242 Sum_probs=110.0
Q ss_pred HHHHHHhhhh--cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCchhc------------
Q 003764 261 KEVLDKHLEV--TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEAE------------ 321 (797)
Q Consensus 261 ~~~~~~~~~~--~~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~-----~~G~~iLRidDtDp~re------------ 321 (797)
.++++++.+. .++.++.-=.=+|||..||||+|-++..+..+|. ...++|+--||.|+-|.
T Consensus 9 ~~i~~~r~~~~~~~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ 88 (360)
T PF01921_consen 9 DEIIKERGKRKGGKEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEK 88 (360)
T ss_dssp HHHHHHC-------SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCC
T ss_pred HHHHHHhhccccCCccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHH
Confidence 3445444333 3456777777899999999999999998888873 34579999999996542
Q ss_pred -------------------hHHHHHHHHHHHHHcCCCCCc----ccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHH
Q 003764 322 -------------------KKEYIDHIEEIVQWMGWEPFK----ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKE 378 (797)
Q Consensus 322 -------------------~~e~~~~I~e~L~wLGl~pd~----~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~ 378 (797)
...|...+.+.|+.||+++.- ..|+|..|+.....|.+ +.... ++-|..
T Consensus 89 ylg~Plt~VPdP~G~~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~i~~aL~--~~~~I------~~Il~~ 160 (360)
T PF01921_consen 89 YLGKPLTRVPDPFGCHESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQIRTALE--NRDEI------REILNE 160 (360)
T ss_dssp CTTSBTTTSB-TTSSSSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHHHCHHHH--THHHH------HHHHHH
T ss_pred hcCCccccCCCCCCCCccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHHHHHHHH--hHHHH------HHHHHH
Confidence 346677778889999997642 33555554433322211 11000 112222
Q ss_pred HhccCCCCCCCC-CChHHHhHHHHHhhcCcccCCceEEEE-EecCCCCCCCcCccEEEEEecCCCC-----CCCC---cc
Q 003764 379 YREKKMNSPWRD-RPIAESLKLFEDMRNGRIEEGKATLRM-KQDMQNDNFNMYDLIAYRIKFTPHP-----HAGD---KW 448 (797)
Q Consensus 379 ~r~~~~~~~~R~-~s~ee~l~~fe~m~~G~~~~g~~~lR~-K~d~~~~~~~~~D~V~~r~~~~~h~-----~~gd---~~ 448 (797)
.++...+..|-- .++.++ -|+. -+..+ ..+.. .+-|-|++....|. +.|. .|
T Consensus 161 ~~~~~~~~~y~Pf~piC~~--------cGri----~tt~v~~~d~~------~~~v~Y~c~~cG~~g~~~i~~g~gKL~W 222 (360)
T PF01921_consen 161 YRGRERPETYSPFLPICEK--------CGRI----DTTEVTEYDPE------GGTVTYRCEECGHEGEVDITGGNGKLQW 222 (360)
T ss_dssp HHHHT--TT--SEEEEETT--------TEE------EEEEEEE--S------SSEEEEE--TTS---EEETTTT-EEE-H
T ss_pred hcCcCCCCCeeeeeeeccc--------cCCc----ccceeeEeecC------CCEEEEEecCCCCEEEEecCCCcccccC
Confidence 222111111100 011000 0110 01111 11111 34577777444442 1211 24
Q ss_pred cc-cccccccchhhhccCCccEEecCccccc---chhHHHHHH-HHhCCCCCceeeeeeccCCCc-eecccccccccccC
Q 003764 449 CI-YPSYDYAHCIVDSIENITHSLCTLEFET---RRASYFWLL-HALGLYQPYVWEYSRLNVSNT-VMSKRKLNFLVTNK 522 (797)
Q Consensus 449 ~~-~PtY~fA~~VDD~~~gITHvlRG~E~~~---~t~~q~~L~-~aLg~~~P~~~~f~~Ln~~g~-kLSKRk~~~~v~~g 522 (797)
++ ||+= =+..||+-=-=|.||.+ |......|+ +.||...|....|....++|. |||||+|+
T Consensus 223 kvDW~mR-------W~~lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~~~~~g~~kmSsSkG~------ 289 (360)
T PF01921_consen 223 KVDWPMR-------WAALGVDFEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEFFLDKGGGKMSSSKGN------ 289 (360)
T ss_dssp HHHHHHH-------HHHTT-SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE--EEES-----------------
T ss_pred CCcChhh-------hhhcCceeccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeEEEeCCCcccccCCCC------
Confidence 32 2221 12356776667999999 777778899 889999998888877655554 99999998
Q ss_pred ccCCCCCcchhhHHHHHHcCCChHHHHHHHHH
Q 003764 523 YVDGWDDPCLMTLAGLRRRGVTSTSINAFVQG 554 (797)
Q Consensus 523 ~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~ 554 (797)
..|++...+- ++|+.|+.|+..
T Consensus 290 ---------~~t~~e~L~~-~~PE~lr~l~~~ 311 (360)
T PF01921_consen 290 ---------GITPEEWLEY-APPESLRYLMAR 311 (360)
T ss_dssp ------------HHHHHTT-S-HHHHHHHHHC
T ss_pred ---------ccCHHHHHHh-cCHHHHHHHHcc
Confidence 3689888875 778888776665
No 74
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=98.06 E-value=2.9e-05 Score=85.85 Aligned_cols=170 Identities=22% Similarity=0.264 Sum_probs=107.6
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC----ch----hchHHHHHHHHHHHHHcCCCCCc--ccCCchhHH
Q 003764 282 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN----PE----AEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 351 (797)
Q Consensus 282 sPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtD----p~----re~~e~~~~I~e~L~wLGl~pd~--~~~qSd~~~ 351 (797)
.|||.+||||...++.+|..- +.|..+++=|-|.- +. .........+..++-.+|++|++ +.+||+..
T Consensus 10 ~PTG~~HlG~~l~~~~~~~~~-q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~qS~~~- 87 (328)
T TIGR00233 10 QPSGKMHLGHYLGAIQTKWLQ-QFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFIFLQSDYP- 87 (328)
T ss_pred CCCcHhHHHHHHHHHHHHHHH-hCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEEEEcCCcH-
Confidence 688999999999999998776 56667666666642 11 23345556667788889999984 78999986
Q ss_pred HHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCcc
Q 003764 352 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 431 (797)
Q Consensus 352 ~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~ 431 (797)
.|++.+-.| .|++|-.++.+. ..+ .+++. ..+ .
T Consensus 88 e~~el~~~l-------~~~~t~~~l~r~--~~~----k~k~~-----------------------------~~~-----~ 120 (328)
T TIGR00233 88 EHYELAWLL-------SCQVTFGELKRM--TQF----KDKSQ-----------------------------AEN-----V 120 (328)
T ss_pred HHHHHHHHH-------HccCCHHHHHhc--cCc----chhcc-----------------------------CCC-----C
Confidence 455555433 577777766532 111 11000 000 0
Q ss_pred EEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhC------CCCCceee--e-ee
Q 003764 432 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWE--Y-SR 502 (797)
Q Consensus 432 V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg------~~~P~~~~--f-~~ 502 (797)
-++ ...||..+=|.++ +.+.++|..|.|-..+-..-.-+.+.++ +..|...+ + ++
T Consensus 121 ~~g-------------~l~YP~lqaaDil---~~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~ 184 (328)
T TIGR00233 121 PIG-------------LFSYPVLQAADIL---LYQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPR 184 (328)
T ss_pred Cch-------------hhcchHHHHhhhh---hcCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccccCC
Confidence 001 1236666655544 6678899999988776666666677777 55565443 2 22
Q ss_pred -ccCCCceecccccc
Q 003764 503 -LNVSNTVMSKRKLN 516 (797)
Q Consensus 503 -Ln~~g~kLSKRk~~ 516 (797)
...+|+|||||..+
T Consensus 185 l~gl~~~KMSKS~~~ 199 (328)
T TIGR00233 185 LMGLSGKKMSKSDPN 199 (328)
T ss_pred CCCCCCCcCCCCCCC
Confidence 35567899999875
No 75
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=98.03 E-value=5.1e-05 Score=85.08 Aligned_cols=187 Identities=21% Similarity=0.258 Sum_probs=111.6
Q ss_pred HHHHHHhhhh-cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCc-------hhchHHHHHHHHHH
Q 003764 261 KEVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP-------EAEKKEYIDHIEEI 332 (797)
Q Consensus 261 ~~~~~~~~~~-~~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp-------~re~~e~~~~I~e~ 332 (797)
.+.+.++++. ..-.+.|=|.| ||.|||||..+ +.++..-...|..+++-|-|... ..+...+...+..+
T Consensus 54 ~d~il~~~~~~~~~~iytG~~P--SG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~ 130 (368)
T PRK12285 54 YDKILEAYRNGKPFAVYTGFMP--SGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILD 130 (368)
T ss_pred HHHHHHHHhcCCCeEEEEccCC--CCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHH
Confidence 4444444443 23345555555 58999999864 55555555567787777877621 12344555557788
Q ss_pred HHHcCCCCCc--ccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccC
Q 003764 333 VQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEE 410 (797)
Q Consensus 333 L~wLGl~pd~--~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~ 410 (797)
+-++|++|++ ++.||++.+ +++.+-.| .|.+|-.++++. .++.. ..+.
T Consensus 131 ~lA~G~Dp~k~~i~~qS~~~~-~~~l~~~l-------~~~~t~~~l~r~--~~f~~---~~~~----------------- 180 (368)
T PRK12285 131 LIALGFDPDKTEIYFQSENIK-VYDLAFEL-------AKKVNFSELKAI--YGFTG---ETNI----------------- 180 (368)
T ss_pred HHHhCCCccceEEEECCchHH-HHHHHHHH-------HhhCcHHHHHHh--hCCCC---CCch-----------------
Confidence 8899999984 789999874 77776655 555666666432 11100 0000
Q ss_pred CceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhh---hccCCccEEecCcccccchhHHHHHH
Q 003764 411 GKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIV---DSIENITHSLCTLEFETRRASYFWLL 487 (797)
Q Consensus 411 g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VD---D~~~gITHvlRG~E~~~~t~~q~~L~ 487 (797)
+. ..||.-+=|.++- |.-..-++|..|.|=..+-..-.-+.
T Consensus 181 -----------------------g~-------------~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~h~~ltRdiA 224 (368)
T PRK12285 181 -----------------------GH-------------IFYPATQAADILHPQLEEGPKPTLVPVGIDQDPHIRLTRDIA 224 (368)
T ss_pred -----------------------hh-------------hhhhHHHHHHHHhhcccccCCceEEEeccchHHHHHHHHHHH
Confidence 00 1244444333321 00134568889988766555545556
Q ss_pred HHh----CCCCCceeeeeec-cCCCceecccccc
Q 003764 488 HAL----GLYQPYVWEYSRL-NVSNTVMSKRKLN 516 (797)
Q Consensus 488 ~aL----g~~~P~~~~f~~L-n~~g~kLSKRk~~ 516 (797)
+.| |+..|...+...+ .++|+|||||...
T Consensus 225 ~r~n~~~gf~~P~~l~~~~lpgL~G~KMSkS~~~ 258 (368)
T PRK12285 225 ERLHGGYGFIKPSSTYHKFMPGLTGGKMSSSKPE 258 (368)
T ss_pred HHHhhhcCCCCchhHhhhcccCCCCCcCCCCCCC
Confidence 666 8888865544444 7889999999853
No 76
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=8.9e-05 Score=81.08 Aligned_cols=183 Identities=19% Similarity=0.174 Sum_probs=116.6
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC-------c-hhchHHHHHHHHHHHHHcCCCCCc--ccCCchhHH
Q 003764 282 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN-------P-EAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 351 (797)
Q Consensus 282 sPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtD-------p-~re~~e~~~~I~e~L~wLGl~pd~--~~~qSd~~~ 351 (797)
-|||.|||||.-.++.+|.......+.|+.=|-|.- + +.....+...+..++=++|++|++ ++.||+.-+
T Consensus 13 ~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~if~QS~v~e 92 (314)
T COG0180 13 QPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKSTIFLQSEVPE 92 (314)
T ss_pred CCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccEEEEccCchH
Confidence 589999999999999999988877678888888763 2 144566777777788889999986 789998854
Q ss_pred HHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCcc
Q 003764 352 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 431 (797)
Q Consensus 352 ~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~ 431 (797)
+++.+-. +-|..+--++++. .++.. ..+.. ++ .++
T Consensus 93 -~~eLa~~-------l~~~~~~gel~r~--~~fKd----------------k~~~~---~~-----~~~----------- 127 (314)
T COG0180 93 -HAELAWL-------LSCVTNFGELERM--TQFKD----------------KSAKK---GE-----SIP----------- 127 (314)
T ss_pred -HHHHHHH-------HHccCcHHHHHhh--cCcch----------------hhhcc---cc-----ccc-----------
Confidence 6666643 3566666666654 22210 00000 00 000
Q ss_pred EEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhC------CCCCceeeee--e-
Q 003764 432 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWEYS--R- 502 (797)
Q Consensus 432 V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg------~~~P~~~~f~--~- 502 (797)
++ .-.||.-+=|..+ +-+-++|=.|.|=..+-....-|.+.++ +..|...... +
T Consensus 128 -~G-------------l~~YPvlqAADIL---l~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i 190 (314)
T COG0180 128 -IG-------------LLTYPVLQAADIL---LYQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARL 190 (314)
T ss_pred -cc-------------chhccHHHHHHhh---hccCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcc
Confidence 00 1125554444333 3355788889988887777777777776 4555332222 4
Q ss_pred ccCCC-ceecccccccccccCccCCCCCcc
Q 003764 503 LNVSN-TVMSKRKLNFLVTNKYVDGWDDPC 531 (797)
Q Consensus 503 Ln~~g-~kLSKRk~~~~v~~g~v~gWdDPr 531 (797)
..++| .|||||..+..| .=+|||.
T Consensus 191 ~gL~g~~KMSkS~~ns~I-----~L~D~~~ 215 (314)
T COG0180 191 PGLDGPGKMSKSDPNSAI-----FLLDDPK 215 (314)
T ss_pred cCCCCCCcccccCCCCee-----eccCCHH
Confidence 36778 899999988333 2356664
No 77
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=97.72 E-value=6.2e-05 Score=92.44 Aligned_cols=94 Identities=21% Similarity=0.318 Sum_probs=68.5
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC----------------chhchHHHHHHHHHHHHHc
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQWM 336 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~--~~G~~iLRidDtD----------------p~re~~e~~~~I~e~L~wL 336 (797)
+++==+|.|||.|||||+++.++.+.+||. ..|.-++.+--+| |.....++.+.|.++++.|
T Consensus 35 ~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~l 114 (805)
T PRK00390 35 YVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSL 114 (805)
T ss_pred EEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 555557999999999999999999999983 4565555544444 2223567889999999999
Q ss_pred CCC--CCccc--CCchhHHHHHHHHHHHHHcCcccc
Q 003764 337 GWE--PFKIT--YTSDYFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 337 Gl~--pd~~~--~qSd~~~~~ye~a~~LI~~G~AY~ 368 (797)
|+. |+..+ ...+|.........+|.++|++|.
T Consensus 115 Gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~ 150 (805)
T PRK00390 115 GFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYR 150 (805)
T ss_pred CCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 995 44443 333455555566779999999885
No 78
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.71 E-value=0.00076 Score=72.69 Aligned_cols=220 Identities=16% Similarity=0.189 Sum_probs=130.4
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Cch-----------hchHHHHHHHHHHHHHcCCC--CC-
Q 003764 282 EPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----------AEKKEYIDHIEEIVQWMGWE--PF- 341 (797)
Q Consensus 282 sPtG-~LHIGharaal~n~~~Ar~~~G~~iLRidDt-----Dp~-----------re~~e~~~~I~e~L~wLGl~--pd- 341 (797)
.||| .|||||...++ ++..-...|..+++=|-|. ||. .+.......+..++..+|+. |+
T Consensus 8 ~PTg~~lHLG~~~~~~-~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~~~~p~k 86 (269)
T cd00805 8 DPTAPSLHLGHLVPLM-KLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILDFIPPEK 86 (269)
T ss_pred CCCCCcccHHHHHHHH-HHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHccCCCcc
Confidence 5889 89999999764 4444444565666666662 342 23456677788899999996 66
Q ss_pred -cccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEec
Q 003764 342 -KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQD 420 (797)
Q Consensus 342 -~~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d 420 (797)
.+..||+..+.+ +...+++ +.|+++-.++.+... + .+ |..
T Consensus 87 ~~i~~~s~~~~~l--~~~~~l~----l~~~~~~~~l~~~~~--~----------------k~-------------r~~-- 127 (269)
T cd00805 87 AKFVNNSDWLLSL--YTLDFLR----LGKHFTVNRMLRRDA--V----------------KV-------------RLE-- 127 (269)
T ss_pred eEEEEchHhhccC--CHHHHHH----HHhhCcHHHHHHHHH--H----------------HH-------------HHh--
Confidence 478999886652 2222222 567788777764311 0 00 000
Q ss_pred CCCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCceeee
Q 003764 421 MQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEY 500 (797)
Q Consensus 421 ~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~~f 500 (797)
...+.+ +. --.||.-+=+..+ ..+.++++.|.|-..+-..-.-+.+.++...|...++
T Consensus 128 -~~~~~~-----~~-------------~~~YP~lQaaDi~---~l~~~l~~~G~DQ~~~i~~~rd~a~r~~~~~~~~l~~ 185 (269)
T cd00805 128 -EEEGIS-----FS-------------EFIYPLLQAYDFV---YLDVDLQLGGSDQRGNITLGRDLIRKLGYKKVVGLTT 185 (269)
T ss_pred -cCCCCc-----HH-------------HHHHHHHHHhhHH---HHhCCeeEecHHHHHHHHHHHHHHHHhCCCCcEEEee
Confidence 000000 00 0124544433332 3456889999988887777777888888877766666
Q ss_pred eec-cCCCceecccccccc-cccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhh
Q 003764 501 SRL-NVSNTVMSKRKLNFL-VTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 577 (797)
Q Consensus 501 ~~L-n~~g~kLSKRk~~~~-v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~ 577 (797)
+.| +.+|.|||||.++.. +.. =|+| .++....++-++++ +.+|+..+-. .+...++++.+.+.
T Consensus 186 ~ll~~l~G~KMSKS~~~~~~i~l-----~dsp--~~i~~Ki~~a~~~~-v~~~l~~~~~------~~~~~~eel~~~~~ 250 (269)
T cd00805 186 PLLTGLDGGKMSKSEGNAIWDPV-----LDSP--YDVYQKIRNAFDPD-VLEFLKLFTF------LDYEEIEELEEEHA 250 (269)
T ss_pred ccccCCCCCcccCCCCCcccccC-----CCCH--HHHHHHHHcCCcHH-HHHHHHHHHc------CCHHHHHHHHHHHh
Confidence 665 789999999998653 221 1333 36666666677774 4555544321 12345666666664
No 79
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=97.61 E-value=0.00014 Score=89.58 Aligned_cols=94 Identities=27% Similarity=0.365 Sum_probs=67.2
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC----------------chhchHHHHHHHHHHHHHc
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQWM 336 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~--~~G~~iLRidDtD----------------p~re~~e~~~~I~e~L~wL 336 (797)
+++=-+|.|||.|||||+++.++.+.+||. ..|.-++..--+| |.....++.+.|.+.++.|
T Consensus 32 ~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~l 111 (842)
T TIGR00396 32 YILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQAL 111 (842)
T ss_pred EEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 566669999999999999999999999984 4566555555554 1223457889999999999
Q ss_pred CCC--CCcccCCch--hHHHHHHHHHHHHHcCcccc
Q 003764 337 GWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 337 Gl~--pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~ 368 (797)
|+. |+..+.+++ |.........+|.++|++|.
T Consensus 112 G~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~ 147 (842)
T TIGR00396 112 GFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYV 147 (842)
T ss_pred CCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEe
Confidence 975 555444443 33333334468999999884
No 80
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=97.59 E-value=0.00072 Score=74.94 Aligned_cols=188 Identities=19% Similarity=0.243 Sum_probs=111.6
Q ss_pred cHHHHHHhhhhcCC-eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Cc--hhchHHHHHHHHH
Q 003764 260 TKEVLDKHLEVTGG-NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NP--EAEKKEYIDHIEE 331 (797)
Q Consensus 260 ~~~~~~~~~~~~~g-~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDt-----Dp--~re~~e~~~~I~e 331 (797)
|.+-|.++++.... .+.+ .=.|||.+||||+- ++.+|......|..+++=|-|. |+ ..........+..
T Consensus 17 ~~~el~~~l~~~~~~~v~~--G~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~ 93 (329)
T PRK08560 17 TEEELRELLESKEEPKAYI--GFEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKK 93 (329)
T ss_pred CHHHHHHHHhCCCCCEEEE--ccCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHH
Confidence 35667777753222 3333 34677999999977 4566666665677777767665 21 2344556667888
Q ss_pred HHHHcCCCCCc--ccCCchhHHH--HHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCc
Q 003764 332 IVQWMGWEPFK--ITYTSDYFQE--LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGR 407 (797)
Q Consensus 332 ~L~wLGl~pd~--~~~qSd~~~~--~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~ 407 (797)
++..+|++|++ +.+||+.... |+..+..| .|.++-.++.+... + . |+
T Consensus 94 ~~~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~l-------~~~~~~~~l~r~~~--~---~-----------------~~ 144 (329)
T PRK08560 94 VFEALGLDPDKTEFVLGSEFQLDKEYWLLVLKL-------AKNTTLARARRSMT--I---M-----------------GR 144 (329)
T ss_pred HHHHcCCChhheEEEecchhhccchHHHHHHHH-------HhhccHHHHHHhhh--h---h-----------------cc
Confidence 89999999974 6789886432 22322222 46666655543210 0 0 00
Q ss_pred ccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHH
Q 003764 408 IEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLL 487 (797)
Q Consensus 408 ~~~g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~ 487 (797)
. .++.+ .| ...||.-+-|.. .+.+.++++.|.|-..+-..-.-++
T Consensus 145 ~------------~~~~~------------------~g--~l~YP~lqaaDi---l~~~ad~vpvG~DQ~~h~~l~Rdia 189 (329)
T PRK08560 145 R------------MEEPD------------------VS--KLVYPLMQVADI---FYLDVDIAVGGMDQRKIHMLAREVL 189 (329)
T ss_pred c------------CCCCC------------------HH--HHHHHHHHHHHH---HHhCCCEEEechhHHHHHHHHHHhh
Confidence 0 00000 00 012555444443 3567889999988776655555566
Q ss_pred HHhCCCCCceeeeeec-cCCCc--eecccc
Q 003764 488 HALGLYQPYVWEYSRL-NVSNT--VMSKRK 514 (797)
Q Consensus 488 ~aLg~~~P~~~~f~~L-n~~g~--kLSKRk 514 (797)
+.++...|.....+.+ +++|. |||||.
T Consensus 190 ~~~n~~~p~~l~~~~l~~L~g~~~KMSKS~ 219 (329)
T PRK08560 190 PKLGYKKPVCIHTPLLTGLDGGGIKMSKSK 219 (329)
T ss_pred HhcCCCCceEEEcCccCCCCCCCCCCcCCC
Confidence 7788877765555543 67776 999998
No 81
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00068 Score=77.81 Aligned_cols=96 Identities=14% Similarity=0.091 Sum_probs=60.9
Q ss_pred CCccEEecCcccccchhHHHHHHHH----hCCCCCceeeeeeccCC-CceecccccccccccCccCCCCCcchhhHHHHH
Q 003764 465 ENITHSLCTLEFETRRASYFWLLHA----LGLYQPYVWEYSRLNVS-NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLR 539 (797)
Q Consensus 465 ~gITHvlRG~E~~~~t~~q~~L~~a----Lg~~~P~~~~f~~Ln~~-g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lr 539 (797)
.|||-=-=|.||..+..+|.-.++. +|+..|....|-...+. +.+||||+|+ ..|++...
T Consensus 228 lgVd~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~~YE~i~lkg~~~mSsSkG~---------------~i~~~dwl 292 (521)
T COG1384 228 LGVDFEPFGKDHAAAGGSYDTGKRIAREIFGYEPPVPFVYEWILLKGGGKMSSSKGN---------------VISLSDWL 292 (521)
T ss_pred cCcccccCCcccccccCchHHHHHHHHHhcCCCCCCCCceEEEEecCCcccccCCCc---------------EEcHHHHH
Confidence 4555555699999999999877764 46666665555554444 5999999998 36888888
Q ss_pred HcCCChHHHHHHHHHhCCCCCCccccHhh-HHHHHHHhh
Q 003764 540 RRGVTSTSINAFVQGIGISRSDSLIRLDR-LEYHIREEL 577 (797)
Q Consensus 540 rrG~~PeAI~~fl~~lG~s~~~~~~~~~~-Le~~ir~~~ 577 (797)
+- ++|+-++.|+.+--.++. -.++++. |-.++.+|.
T Consensus 293 ev-~~pE~lry~~~r~kP~r~-~~~d~~~~il~lvDEyd 329 (521)
T COG1384 293 EV-APPEVLRYLIARTKPNRH-IDFDFDLGILKLVDEYD 329 (521)
T ss_pred Hh-cCHhHeeeeeeecCCCcc-eecCCCCChhHHHHHHH
Confidence 75 667766655543312221 2344444 444444443
No 82
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=97.55 E-value=0.00087 Score=74.39 Aligned_cols=180 Identities=16% Similarity=0.112 Sum_probs=101.6
Q ss_pred CCCCcCchhHHHHHHHHHHHH-HHcCCEEEEEeecCC------chhchHHHHHHHHHHHHHcCCCCCc--ccCCchhHHH
Q 003764 282 EPNGYLHIGHAKAMFVDFGLA-KERGGYCYLRYDDTN------PEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQE 352 (797)
Q Consensus 282 sPtG~LHIGharaal~n~~~A-r~~~G~~iLRidDtD------p~re~~e~~~~I~e~L~wLGl~pd~--~~~qSd~~~~ 352 (797)
.|||.+||||...++-+|..- ..+|..+++=|-|.- ...+..++...+..++-++|++|++ +.+||+.-+
T Consensus 11 qPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if~qS~v~~- 89 (332)
T PRK12556 11 KPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGLDPEDVIFYRQSDVPE- 89 (332)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheeecccceEEEECCCchH-
Confidence 578999999999999998655 456666555565542 1123344555567778899999985 789999743
Q ss_pred HHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccE
Q 003764 353 LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI 432 (797)
Q Consensus 353 ~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V 432 (797)
..+.+- ...|.++-.+|... ..|-.. ...-..+ | + .. .+.
T Consensus 90 ~~eL~~-------il~~~t~~g~L~R~--~~~K~k---------~~~~~~~--~----------~----~~-----~~~- 129 (332)
T PRK12556 90 IFELAW-------ILSCLTPKGLMNRA--HAYKAK---------VDQNKEA--G----------L----DL-----DAG- 129 (332)
T ss_pred HHHHHH-------HHHccchHHHHHhc--cHHHHH---------Hhhhhhh--c----------c----cc-----CCC-
Confidence 333332 23577666666432 111000 0000000 0 0 00 000
Q ss_pred EEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhC------CCCCcee---eeeec
Q 003764 433 AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVW---EYSRL 503 (797)
Q Consensus 433 ~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg------~~~P~~~---~f~~L 503 (797)
..--...||.-+=|..+ +.+.+||.-|.|=..+-..-.-+.+.++ +..|... +..++
T Consensus 130 -----------~~~gll~YPvLqAADIl---~~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l 195 (332)
T PRK12556 130 -----------VNMGLYTYPILMAADIL---LFQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLPEYVIQEEGAIL 195 (332)
T ss_pred -----------CcchhhhchHHHhhhhh---hccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCceeccccccccc
Confidence 00011236666555443 5678999999987766555555555555 3445333 22223
Q ss_pred -cCCCceecccccc
Q 003764 504 -NVSNTVMSKRKLN 516 (797)
Q Consensus 504 -n~~g~kLSKRk~~ 516 (797)
..+|.|||||.++
T Consensus 196 ~gLdg~KMSKS~~n 209 (332)
T PRK12556 196 PGLDGRKMSKSYGN 209 (332)
T ss_pred cCCCCCCCCCCCCC
Confidence 5678999999864
No 83
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.0024 Score=73.21 Aligned_cols=158 Identities=23% Similarity=0.331 Sum_probs=121.7
Q ss_pred HhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCC-------CCcCchhHHHHHHhcCCCCC
Q 003764 17 LKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPT-------NALVHRPTLLLYIVSSKIKT 89 (797)
Q Consensus 17 ~~iGL~e~kaket~KN~kls~~L~~ii~~a~~~~~~dk~~g~ll~~lat~~~~-------~~~~~~~~l~~~I~~g~iks 89 (797)
...|||++-|.++++.+.+ .-|.++.+. ++. +.-+...|++....+.. -...|...+.+.+.+|+|.-
T Consensus 465 ~eygLs~~LA~~~~~~~~~-~~FEel~e~-~v~---p~~~A~~L~~~~~~L~reg~~i~~l~~~~i~~~~~~~~~g~iak 539 (631)
T COG2511 465 KEYGLSKELAEQLASDPRV-DLFEELVEK-GVD---PTLIASTLVNTLPELRREGVEIDNLDDEHIEELLRLVSEGKIAK 539 (631)
T ss_pred HHhCCCHHHHHHHHhhhhH-HHHHHHHHc-CCC---HHHHHHHHHHHHHHHHhcCCccccCCHHHHHHHHHHHhcccchH
Confidence 5579999999999998654 455555554 442 23344445444433321 23567888999999999985
Q ss_pred HHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccccchhhhHHHHHhh-CCCCCh
Q 003764 90 PAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKR-LPWADP 168 (797)
Q Consensus 90 ~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~k~~~~~~ry~~n~g~ll~~vr~~-LkWAd~ 168 (797)
.++..+++.|.++| ..|.++.-+..|.. ..++|||++.|++++++|.+.+.+.+-.. +|.||+.+=+. =-=|||
T Consensus 540 -e~iee~l~~l~~~p--~~~~~e~~~~~gL~-~ls~eEve~iI~eii~~~~d~i~~rg~~a-~g~lmg~~M~~~rg~aDg 614 (631)
T COG2511 540 -EAIEEILKALAENP--GKDAAEIAEKLGLK-ELSEEEVEKIIDEIIESNLDVIKERGMGA-MGLLMGRVMAKLRGRADG 614 (631)
T ss_pred -HHHHHHHHHHHhCC--CCCHHHHHHHhccc-cCCHHHHHHHHHHHHHhhHHHHHHhchhh-HHHHHHHHHHHhhccCCc
Confidence 99999999999875 56888888888864 59999999999999999999888877776 89999985433 346999
Q ss_pred hhHHHHHHHHHHHhcC
Q 003764 169 KIVKQLIDARMYELLG 184 (797)
Q Consensus 169 k~vK~~vd~~~~~llg 184 (797)
+.|...+.+.+.+.+|
T Consensus 615 k~v~e~lr~~i~e~~~ 630 (631)
T COG2511 615 KLVSEILREKLQEILG 630 (631)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999888776
No 84
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=97.38 E-value=0.00038 Score=86.28 Aligned_cols=95 Identities=22% Similarity=0.217 Sum_probs=67.7
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC-----------------------ch----------
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN-----------------------PE---------- 319 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~--~~G~~iLRidDtD-----------------------p~---------- 319 (797)
+++=-||.|||.|||||+++.++-+.+||. ..|..++..=..| +.
T Consensus 39 ~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~ 118 (861)
T TIGR00392 39 IFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCR 118 (861)
T ss_pred EEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHH
Confidence 556668999999999999999999999983 4666665544443 10
Q ss_pred hchHHHHHHHHHHHHHcCC--CCCcccCCch--hHHHHHHHHHHHHHcCccccC
Q 003764 320 AEKKEYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYVD 369 (797)
Q Consensus 320 re~~e~~~~I~e~L~wLGl--~pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~C 369 (797)
....++.+.+.++++.||+ +|+..+.+.+ |.........+|.++|++|..
T Consensus 119 ~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliyr~ 172 (861)
T TIGR00392 119 EFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRG 172 (861)
T ss_pred HHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEeec
Confidence 1233578888999999999 6777655554 322222334589999999964
No 85
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00014 Score=88.13 Aligned_cols=92 Identities=23% Similarity=0.323 Sum_probs=66.7
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCC---EEEEEeecC-------------CchhchHHHHHHHHHHHHHc
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGG---YCYLRYDDT-------------NPEAEKKEYIDHIEEIVQWM 336 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~--~~G---~~iLRidDt-------------Dp~re~~e~~~~I~e~L~wL 336 (797)
+++=-=|-|||.||+||+|+..+.+.+||. ..| -|=+=+|-+ ||..-...+++.+.++|+.|
T Consensus 37 yvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~l 116 (814)
T COG0495 37 YVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSL 116 (814)
T ss_pred EEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHHh
Confidence 445555899999999999999999999983 234 333444444 56667889999999999999
Q ss_pred CCC--CCcccCCchhHHHHHHHH----HHHHHcCcccc
Q 003764 337 GWE--PFKITYTSDYFQELYELA----VELIRRGHAYV 368 (797)
Q Consensus 337 Gl~--pd~~~~qSd~~~~~ye~a----~~LI~~G~AY~ 368 (797)
|+. |+....++|= .||.+. .+|-++|++|.
T Consensus 117 G~siDW~Ref~T~Dp--~Yyk~~QW~F~kL~ekGL~y~ 152 (814)
T COG0495 117 GFSIDWRREFATCDP--EYYKWIQWQFLKLYEKGLAYR 152 (814)
T ss_pred CCccccccceecCCc--cHHHHHHHHHHHHHHCCCEEe
Confidence 986 5543333331 255443 48999999995
No 86
>PLN02563 aminoacyl-tRNA ligase
Probab=97.36 E-value=0.00052 Score=85.53 Aligned_cols=94 Identities=23% Similarity=0.349 Sum_probs=69.4
Q ss_pred EEEEeCCCCCCc-CchhHHHHHHHHHHHHHH--cCCEEEEEeecCC----------------chhchHHHHHHHHHHHHH
Q 003764 275 VLTRFPPEPNGY-LHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQW 335 (797)
Q Consensus 275 v~tRFaPsPtG~-LHIGharaal~n~~~Ar~--~~G~~iLRidDtD----------------p~re~~e~~~~I~e~L~w 335 (797)
+++=-+|.|||. |||||+++.++.+.+||. ..|.-+|.+--+| |.....++++.|.+.++.
T Consensus 113 ~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~ 192 (963)
T PLN02563 113 YVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKS 192 (963)
T ss_pred EEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHH
Confidence 566667999996 999999999999999984 4676666666665 122356788999999999
Q ss_pred cCC--CCCcccCCch--hHHHHHHHHHHHHHcCcccc
Q 003764 336 MGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 336 LGl--~pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~ 368 (797)
||+ +|+..++.++ |.........+|.++|++|.
T Consensus 193 lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~ 229 (963)
T PLN02563 193 LGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQ 229 (963)
T ss_pred hCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 995 5666544443 33333345568999999984
No 87
>PLN02943 aminoacyl-tRNA ligase
Probab=97.29 E-value=0.00059 Score=85.38 Aligned_cols=94 Identities=24% Similarity=0.329 Sum_probs=69.8
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCch-----------------------hc--------
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE-----------------------AE-------- 321 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar--~~~G~~iLRidDtDp~-----------------------re-------- 321 (797)
+++=-||.|||.||||||++..+-+.+|| ...|.-++.+-.+|.. |+
T Consensus 91 ~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~ 170 (958)
T PLN02943 91 VIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWE 170 (958)
T ss_pred EEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHH
Confidence 55556899999999999999999999998 4578877777777621 11
Q ss_pred -hHHHHHHHHHHHHHcCC--CCCcccCCch--hHHHHHHHHHHHHHcCcccc
Q 003764 322 -KKEYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 322 -~~e~~~~I~e~L~wLGl--~pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~ 368 (797)
..++...|.+.++.||+ +|+..+++.+ |.........+|-++|+.|.
T Consensus 171 ~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr 222 (958)
T PLN02943 171 WKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQ 222 (958)
T ss_pred HHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 13667899999999998 4666555544 33333345568999999885
No 88
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=97.28 E-value=0.00054 Score=86.19 Aligned_cols=94 Identities=26% Similarity=0.275 Sum_probs=70.2
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCch---------h-----------------------
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE---------A----------------------- 320 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar--~~~G~~iLRidDtDp~---------r----------------------- 320 (797)
+++==||.|||.||||||++.++.+.+|| ...|.-++.+-.+|.. +
T Consensus 63 ~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~ 142 (995)
T PTZ00419 63 VIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVW 142 (995)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHH
Confidence 44555899999999999999999999998 4567777777777621 0
Q ss_pred -chHHHHHHHHHHHHHcCCC--CCcccCC--chhHHHHHHHHHHHHHcCcccc
Q 003764 321 -EKKEYIDHIEEIVQWMGWE--PFKITYT--SDYFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 321 -e~~e~~~~I~e~L~wLGl~--pd~~~~q--Sd~~~~~ye~a~~LI~~G~AY~ 368 (797)
-..++.+.|.++++.||+. |+..+++ .+|....+....+|.++|+.|.
T Consensus 143 ~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr 195 (995)
T PTZ00419 143 EWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYR 195 (995)
T ss_pred HHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 1257788899999999965 5554443 3455555566779999999885
No 89
>PLN02486 aminoacyl-tRNA ligase
Probab=97.26 E-value=0.0083 Score=67.88 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=52.1
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHcCCEEEEEeecC----C---chhchHHHHHHHHHHHHHcCCCCCc--ccCCchhHH
Q 003764 282 EPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----N---PEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 351 (797)
Q Consensus 282 sPtG-~LHIGharaal~n~~~Ar~~~G~~iLRidDt----D---p~re~~e~~~~I~e~L~wLGl~pd~--~~~qSd~~~ 351 (797)
.||| .|||||+..+++.-.+-+..|..+++=|.|- . ...+..++......++..+|++|++ +..+++++.
T Consensus 81 ~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~~~ 160 (383)
T PLN02486 81 GPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYVG 160 (383)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHHHh
Confidence 7888 5999999998876666666677777777761 1 1122344556677778889999974 566777663
Q ss_pred -HHHHHHHH
Q 003764 352 -ELYELAVE 359 (797)
Q Consensus 352 -~~ye~a~~ 359 (797)
.+|..+.+
T Consensus 161 ~~~~~~~~~ 169 (383)
T PLN02486 161 GAFYKNMVK 169 (383)
T ss_pred HhHHHHHHH
Confidence 34544443
No 90
>PLN02843 isoleucyl-tRNA synthetase
Probab=97.19 E-value=0.0008 Score=84.30 Aligned_cols=94 Identities=24% Similarity=0.198 Sum_probs=65.5
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC-----------------------chhc-------h
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN-----------------------PEAE-------K 322 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~--~~G~~iLRidDtD-----------------------p~re-------~ 322 (797)
+++==||.+||.||||||.+.++-+.++|. ..|.-++.+--+| |... .
T Consensus 35 ~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~ 114 (974)
T PLN02843 35 TLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFA 114 (974)
T ss_pred EEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHH
Confidence 344458999999999999999999999984 3555444443333 2211 3
Q ss_pred HHHHHHHHHHHHHcCC--CCCcccCCch--hHHHHHHHHHHHHHcCcccc
Q 003764 323 KEYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 323 ~e~~~~I~e~L~wLGl--~pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~ 368 (797)
.++.+.+.++++.||+ +|+..+++.+ |-........+|.++|+.|.
T Consensus 115 ~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr 164 (974)
T PLN02843 115 KKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYR 164 (974)
T ss_pred HHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 4567778999999999 7887665544 33333345568999999885
No 91
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=97.17 E-value=0.00069 Score=85.48 Aligned_cols=94 Identities=23% Similarity=0.269 Sum_probs=68.4
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCch---------h-----------------------
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE---------A----------------------- 320 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~--~~G~~iLRidDtDp~---------r----------------------- 320 (797)
+++==||.|||.|||||+++.++-+.+||. ..|.-++.+-.+|.. +
T Consensus 51 ~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~ 130 (1052)
T PRK14900 51 SIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVW 130 (1052)
T ss_pred EEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHH
Confidence 444558999999999999999999999984 467767766666621 0
Q ss_pred -chHHHHHHHHHHHHHcCCC--CCcccC--CchhHHHHHHHHHHHHHcCcccc
Q 003764 321 -EKKEYIDHIEEIVQWMGWE--PFKITY--TSDYFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 321 -e~~e~~~~I~e~L~wLGl~--pd~~~~--qSd~~~~~ye~a~~LI~~G~AY~ 368 (797)
...++.+.|.++++.||+. |+..++ ..+|.........+|.++|+.|.
T Consensus 131 ~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr 183 (1052)
T PRK14900 131 AWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYR 183 (1052)
T ss_pred HHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 1245678899999999965 555443 33454444455678999999885
No 92
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=97.16 E-value=0.00098 Score=74.05 Aligned_cols=91 Identities=23% Similarity=0.248 Sum_probs=58.4
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC-------chhchHHHHHHHHHHHHHcCCCCCc--ccC
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN-------PEAEKKEYIDHIEEIVQWMGWEPFK--ITY 345 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtD-------p~re~~e~~~~I~e~L~wLGl~pd~--~~~ 345 (797)
|.+=| .|||.+||||...++.++..-...+..+++ |-|.- ...+..++...+..++-.+|++|++ +.+
T Consensus 5 v~sG~--~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~-IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~ 81 (333)
T PRK12282 5 ILTGD--RPTGKLHLGHYVGSLKNRVALQNEHEQFVL-IADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFI 81 (333)
T ss_pred EEEee--CCCCcchHHHHHHHHHHHHHHHhCCCEEEE-EccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEE
Confidence 34444 457999999999999999666655555444 43321 1223445666677778889999974 678
Q ss_pred CchhHHHHHHHHHHHHHcCccccCCCCHHHH
Q 003764 346 TSDYFQELYELAVELIRRGHAYVDHQTPEEI 376 (797)
Q Consensus 346 qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel 376 (797)
||+..+ +.+.+- .+.|.++-.++
T Consensus 82 qS~~~e-~~~l~~-------~l~~~~~~~~l 104 (333)
T PRK12282 82 QSQIPE-LAELTM-------YYMNLVTVARL 104 (333)
T ss_pred CCcchH-HHHHHH-------HHHhhchHHHH
Confidence 999743 333321 25677666555
No 93
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=97.12 E-value=0.00091 Score=83.10 Aligned_cols=89 Identities=27% Similarity=0.309 Sum_probs=66.7
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCch---------h-----------------------chHHH
Q 003764 280 PPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE---------A-----------------------EKKEY 325 (797)
Q Consensus 280 aPsPtG~LHIGharaal~n~~~Ar~--~~G~~iLRidDtDp~---------r-----------------------e~~e~ 325 (797)
||.+||.||||||.+.++-+.+||. ..|.-+|.+-.+|.. + -..++
T Consensus 44 pP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~ 123 (874)
T PRK05729 44 PPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEES 123 (874)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999984 577777777777721 0 03567
Q ss_pred HHHHHHHHHHcCCC--CCcccCCch--hHHHHHHHHHHHHHcCcccc
Q 003764 326 IDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 326 ~~~I~e~L~wLGl~--pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~ 368 (797)
.+.|.++++.||+. |+..+++.+ |.........+|.++|+.|.
T Consensus 124 ~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr 170 (874)
T PRK05729 124 GGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYR 170 (874)
T ss_pred HHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEee
Confidence 89999999999975 555554443 33334455568999999884
No 94
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=97.12 E-value=0.0013 Score=71.35 Aligned_cols=177 Identities=17% Similarity=0.185 Sum_probs=104.2
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Cch----hchHHHHHHHHHH--HHHcCCCCC--cccCCch
Q 003764 282 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE----AEKKEYIDHIEEI--VQWMGWEPF--KITYTSD 348 (797)
Q Consensus 282 sPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDt-----Dp~----re~~e~~~~I~e~--L~wLGl~pd--~~~~qSd 348 (797)
.|||.|||||+.+.. ++......|...++=|-|. |+. |........+..+ +-.+|++|+ .+..||+
T Consensus 13 ~PTg~lHlG~l~~~~-~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~k~~i~~~s~ 91 (292)
T PF00579_consen 13 DPTGDLHLGHLVPIM-KLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPEKTEIFRQSD 91 (292)
T ss_dssp ESSSS-BHHHHHHHH-HHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTTTEEEEEGHH
T ss_pred CCCCcccchHHHHHH-HHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCccceEEEeCCC
Confidence 578999999998864 4555555888888877765 333 4444555555665 778999996 4789998
Q ss_pred hHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCc
Q 003764 349 YFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNM 428 (797)
Q Consensus 349 ~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~ 428 (797)
..... ++...|...+. .-++.+.. .++.+.. ....+ +...+
T Consensus 92 ~~~~~-~~~~~l~~~~~-------~~~l~~~~------------------~~~~~~~-~~~~~------------~~~~~ 132 (292)
T PF00579_consen 92 WPEHM-ELWWFLSDVAR-------LFSLNRML------------------RFKDVKK-RLKNG------------EGISL 132 (292)
T ss_dssp HHCHH-HHHHHHHHHHB-------HHHHHHHH------------------HHHHHHH-HHSST------------TTSBH
T ss_pred ccccc-chhhhhccccc-------ccchhhhh------------------hhccccc-ccccc------------cCcce
Confidence 76544 55544433222 12222221 0111100 00000 00000
Q ss_pred CccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCC----CCceeeeeec-
Q 003764 429 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY----QPYVWEYSRL- 503 (797)
Q Consensus 429 ~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~----~P~~~~f~~L- 503 (797)
....||..+ +.|=...+.++++.|.|-..+-..-.-+.+.++.. .|.....+.|
T Consensus 133 ------------------~~~~Yp~lQ---aaD~~~l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~ 191 (292)
T PF00579_consen 133 ------------------GEFSYPLLQ---AADILLLKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLP 191 (292)
T ss_dssp ------------------HHHHHHHHH---HHHHHHTTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBB
T ss_pred ------------------eeEEccccc---ccceeeeccccccccchHHHHHHHHHHHHhhhcccccccCchheeecccc
Confidence 012356544 33444666779999998887776666677788876 7866666654
Q ss_pred cCCCc-eeccccccccc
Q 003764 504 NVSNT-VMSKRKLNFLV 519 (797)
Q Consensus 504 n~~g~-kLSKRk~~~~v 519 (797)
..+|+ ||||+.++..|
T Consensus 192 ~l~G~~KMSKS~~ns~I 208 (292)
T PF00579_consen 192 GLDGQKKMSKSDPNSAI 208 (292)
T ss_dssp STTSSSBTTTTTTGGS-
T ss_pred ccCCccccCccCCccEE
Confidence 67888 99999988443
No 95
>PLN02381 valyl-tRNA synthetase
Probab=97.11 E-value=0.0011 Score=83.79 Aligned_cols=94 Identities=27% Similarity=0.324 Sum_probs=68.0
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCch---------h-----------------------
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE---------A----------------------- 320 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~--~~G~~iLRidDtDp~---------r----------------------- 320 (797)
+++==||.+||.|||||+++..+.+.+||. ..|.-++.+--+|.. +
T Consensus 131 ~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~ 210 (1066)
T PLN02381 131 VIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVW 210 (1066)
T ss_pred EEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHH
Confidence 555559999999999999999999999984 467766666666511 0
Q ss_pred -chHHHHHHHHHHHHHcCC--CCCcccCCch--hHHHHHHHHHHHHHcCcccc
Q 003764 321 -EKKEYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 321 -e~~e~~~~I~e~L~wLGl--~pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~ 368 (797)
...++.+.|.+.++.||+ +|+..+++.+ |.........+|.++|+.|.
T Consensus 211 ~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr 263 (1066)
T PLN02381 211 KWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYR 263 (1066)
T ss_pred HHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 134667888999999996 4666655554 33333344568999999885
No 96
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.10 E-value=0.0011 Score=82.72 Aligned_cols=94 Identities=22% Similarity=0.238 Sum_probs=67.2
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC----------------------chh-------chH
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------------PEA-------EKK 323 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~--~~G~~iLRidDtD----------------------p~r-------e~~ 323 (797)
+++==||.+||.||||||++.++.+.++|. ..|..++.+=-.| ++. ...
T Consensus 52 ~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~ 131 (912)
T PRK05743 52 ILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYAL 131 (912)
T ss_pred EEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHH
Confidence 445558999999999999999999999984 4566555443333 321 234
Q ss_pred HHHHHHHHHHHHcCC--CCCcccCCch--hHHHHHHHHHHHHHcCcccc
Q 003764 324 EYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 324 e~~~~I~e~L~wLGl--~pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~ 368 (797)
++.+.+.++++.||+ +|+..+++.+ |-........+|.++|+.|.
T Consensus 132 ~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~ 180 (912)
T PRK05743 132 EQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYK 180 (912)
T ss_pred HHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 567889999999999 7877655543 33334455668999999885
No 97
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=97.09 E-value=0.0013 Score=78.40 Aligned_cols=94 Identities=23% Similarity=0.278 Sum_probs=61.5
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC---ch------------------------------
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN---PE------------------------------ 319 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~--~~G~~iLRidDtD---p~------------------------------ 319 (797)
+++==||.+||.||+||+++..+-+.+||. ..|..++..=-.| .+
T Consensus 26 ~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~ 105 (601)
T PF00133_consen 26 FIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREECR 105 (601)
T ss_dssp EEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHH
T ss_pred EEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhhhc
Confidence 334448999999999999999999999983 4666555443333 10
Q ss_pred hchHHHHHHHHHHHHHcCC--CCCcccC--CchhHHHHHHHHHHHHHcCcccc
Q 003764 320 AEKKEYIDHIEEIVQWMGW--EPFKITY--TSDYFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 320 re~~e~~~~I~e~L~wLGl--~pd~~~~--qSd~~~~~ye~a~~LI~~G~AY~ 368 (797)
....++.+.+.++++.||+ +|+..++ ..+|-........+|.++|+.|.
T Consensus 106 ~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr 158 (601)
T PF00133_consen 106 EWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYR 158 (601)
T ss_dssp HHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEE
T ss_pred chhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEe
Confidence 1134677888999999997 4665443 33444444455679999999995
No 98
>TIGR00134 gatE_arch glutamyl-tRNA(Gln) amidotransferase, subunit E. The Archaea have an Asp-tRNA(Asn) amidotransferase instead of an Asp--tRNA ligase, but the genes have not been identified. It is likely that this protein replaces gatB in Asp-tRNA(Asn) amidotransferase but that both enzymes share gatA.
Probab=97.07 E-value=0.013 Score=69.87 Aligned_cols=157 Identities=20% Similarity=0.278 Sum_probs=116.0
Q ss_pred HHHH-HhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCCC-------CcCchhHHHHHHhc
Q 003764 13 LELF-LKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTN-------ALVHRPTLLLYIVS 84 (797)
Q Consensus 13 ~~~f-~~iGL~e~kaket~KN~kls~~L~~ii~~a~~~~~~dk~~g~ll~~lat~~~~~-------~~~~~~~l~~~I~~ 84 (797)
.+.| ...|||+.-|.-++.+. .+.-+++++...+. -++.+.+.|.+....++.. ...|...|+..|.+
T Consensus 452 ~~r~~~~ygls~~~A~~l~~~~-~~~~fe~~~~~~~~---~~~~~an~l~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 527 (620)
T TIGR00134 452 KERIMREYGLSEDLASQLVKSN-YVDEFEALTEKFRV---DPTVIASLLAYTLRELRREGHDIDGLELRHLRDAIKLLEV 527 (620)
T ss_pred HHHHHHHcCCCHHHHHHHHhch-HHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHHHHHHHc
Confidence 4444 47899999999988885 56666666655442 2456666665544333321 13578889999999
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccccchhhhHHHHHhhCC
Q 003764 85 SKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLP 164 (797)
Q Consensus 85 g~iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~k~~~~~~ry~~n~g~ll~~vr~~Lk 164 (797)
|+|.. .++...++.+-.++ -+.++.-++.|... +|.++|++.|+++|++|.+.+.+.+-+ .+|.+||+|.+.++
T Consensus 528 g~is~-~~~k~vl~~~~~~~---~~~~~iiee~gL~q-lsdeel~~iV~evI~en~~~V~~~~~k-~~G~lmGqVMk~tk 601 (620)
T TIGR00134 528 GKIAK-EGLREILKCMCDEP---LAAEDAARKLKLKL-LAEEEIESIIQEIIEENLDMISERGEG-AMGPLMGQAMGRLR 601 (620)
T ss_pred CCCcH-HHHHHHHHHHHhCC---CCHHHHHHHcCCcC-CCHHHHHHHHHHHHHhChHhhhccCHh-HHHHHHHHHHHHhc
Confidence 99975 77788888776544 25677999999654 899999999999999998877775544 48999999977654
Q ss_pred C-CChhhHHHHHHHHH
Q 003764 165 W-ADPKIVKQLIDARM 179 (797)
Q Consensus 165 W-Ad~k~vK~~vd~~~ 179 (797)
= |||+.|.+.|.+.+
T Consensus 602 GkAdp~~V~~lLke~L 617 (620)
T TIGR00134 602 GKADGKVVNRILRKKL 617 (620)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4 99999999988765
No 99
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.04 E-value=0.0015 Score=72.64 Aligned_cols=171 Identities=18% Similarity=0.163 Sum_probs=94.5
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC----Cc--hhchHHHHHHHHHHHHHcCCCCCc--ccCCchhHHHH
Q 003764 282 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NP--EAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQEL 353 (797)
Q Consensus 282 sPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDt----Dp--~re~~e~~~~I~e~L~wLGl~pd~--~~~qSd~~~~~ 353 (797)
.|||.|||||...++-+|..-... ..+++=|-|. ++ ..+..++...+..++-.+|++|++ +.+||+..+ +
T Consensus 9 ~PTG~lHLG~~~g~~~~~~~lQ~~-~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS~~~~-~ 86 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKNWVELQDE-YECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQSHVPE-H 86 (333)
T ss_pred CCCccchHHhHHHHHHHHHHHHhc-CCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEeCCCch-h
Confidence 588999999999777777443332 3444444432 11 223445556677788889999974 788998643 4
Q ss_pred HHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccEE
Q 003764 354 YELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIA 433 (797)
Q Consensus 354 ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~ 433 (797)
.+++-. ..|..+-.++++. . . |.+.. + + . ..+. -+
T Consensus 87 ~el~~~-------l~~~~~~~~l~r~--~----~------------~k~~~-~---------~-~----~~~~-----~~ 121 (333)
T PRK00927 87 AELAWI-------LNCITPLGELERM--T----Q------------FKDKS-A---------K-Q----KENV-----SA 121 (333)
T ss_pred HHHHHH-------HHhhhhHHHHHhh--h----h------------HHHHH-h---------c-c----CCCC-----Cc
Confidence 443332 2344444444322 0 0 00000 0 0 0 0000 00
Q ss_pred EEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCC------CCCceee--e-ee-c
Q 003764 434 YRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL------YQPYVWE--Y-SR-L 503 (797)
Q Consensus 434 ~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~------~~P~~~~--f-~~-L 503 (797)
+ ...||.-+=|.++ +.+.++|..|.|=..+-..-.-|++.++. ..|.... + ++ .
T Consensus 122 g-------------~~~YP~lQaaDil---~~~~divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~ 185 (333)
T PRK00927 122 G-------------LFTYPVLMAADIL---LYKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVM 185 (333)
T ss_pred H-------------hhhcHHHHHHHHH---hcCCCEEeeccchHHHHHHHHHHHHHhhhhccccCCCChhhhcccccccc
Confidence 1 1236666655554 56889999999887665555556666652 3443332 3 33 3
Q ss_pred cCCCc--eeccccc
Q 003764 504 NVSNT--VMSKRKL 515 (797)
Q Consensus 504 n~~g~--kLSKRk~ 515 (797)
+++|. |||||..
T Consensus 186 gL~g~~~KMSKS~~ 199 (333)
T PRK00927 186 GLDGPTKKMSKSDP 199 (333)
T ss_pred CCCCCCCCCCCCCC
Confidence 66765 9999987
No 100
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=97.04 E-value=0.0014 Score=83.50 Aligned_cols=92 Identities=18% Similarity=0.193 Sum_probs=69.4
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCch---------h------------------------c
Q 003764 277 TRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE---------A------------------------E 321 (797)
Q Consensus 277 tRFaPsPtG~LHIGharaal~n~~~Ar~--~~G~~iLRidDtDp~---------r------------------------e 321 (797)
.==||.+||.||||||.+.++-+.++|. ..|.-+++.--+|.. + .
T Consensus 107 ~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~ 186 (1205)
T PTZ00427 107 YDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGI 186 (1205)
T ss_pred ecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHH
Confidence 3448999999999999999999999984 578888887777611 0 1
Q ss_pred hHHHHHHHHHHHHHcC--CCCCcccCCch--hHHHHHHHHHHHHHcCcccc
Q 003764 322 KKEYIDHIEEIVQWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 322 ~~e~~~~I~e~L~wLG--l~pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~ 368 (797)
..+|.+.+.+.++.|| ++|+..+++.+ |.........+|.++|+.|.
T Consensus 187 ~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr 237 (1205)
T PTZ00427 187 VLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYK 237 (1205)
T ss_pred HHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 2356788899999999 78887665554 44444455668999999884
No 101
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.02 E-value=0.0055 Score=66.31 Aligned_cols=174 Identities=15% Similarity=0.153 Sum_probs=99.9
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Cc-----------hhchHHHHHHHHHHHHHcCCC--CCc
Q 003764 282 EPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NP-----------EAEKKEYIDHIEEIVQWMGWE--PFK 342 (797)
Q Consensus 282 sPtG-~LHIGharaal~n~~~Ar~~~G~~iLRidDt-----Dp-----------~re~~e~~~~I~e~L~wLGl~--pd~ 342 (797)
.||| .|||||+.. +.++..-...|..+++=|-|- || ..+..+....|..++..+|++ |+.
T Consensus 7 ~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~d~~p~k 85 (273)
T cd00395 7 DPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGIFEDPTQ 85 (273)
T ss_pred cCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcCcCCCcc
Confidence 5889 799999998 666665555555554433321 33 223455677788899999998 763
Q ss_pred --ccCCchhHH--HHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEE
Q 003764 343 --ITYTSDYFQ--ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMK 418 (797)
Q Consensus 343 --~~~qSd~~~--~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K 418 (797)
+..||+... .+++.+..| -|+.+-.++.+.-. |.+ |++
T Consensus 86 ~~i~~ns~~~~~~~~~~l~~~l-------~~~~~~~~l~~~~~------------------~k~-------------r~~ 127 (273)
T cd00395 86 ATLFNNSDWPGPLAHIQFLRDL-------GKHVYVNYMERKTS------------------FQS-------------RSE 127 (273)
T ss_pred eEEEEccccCCcccHHHHHHHH-------HccCcHHHHHhChH------------------HHH-------------Hhc
Confidence 788998864 355555443 35556555543210 100 000
Q ss_pred ecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhh-hccCCccEEecCcccccchhHHHHHHHHhC-CCCCc
Q 003764 419 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIV-DSIENITHSLCTLEFETRRASYFWLLHALG-LYQPY 496 (797)
Q Consensus 419 ~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VD-D~~~gITHvlRG~E~~~~t~~q~~L~~aLg-~~~P~ 496 (797)
. ..++. .+ .||.-+=+..+- ..-.+.++++-|.|=..+-..=.-|.+.++ ...|.
T Consensus 128 ----~-~~~~~-~~-----------------~Yp~lQaaD~l~l~~~~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~p~ 184 (273)
T cd00395 128 ----E-GISAT-EF-----------------TYPPLQAADFLLLNTTEGCDIQPGGSDQWGNITLGRELARRFNGFTIAE 184 (273)
T ss_pred ----C-CCCch-hh-----------------hhHHHHHHHHHHHhcccCCcEEEecHHHHHHHHHHHHHHHHhCCCCCCe
Confidence 0 00000 00 123222111110 011456888889887766665556667775 56776
Q ss_pred eeeeeec-cCCCceeccccccc
Q 003764 497 VWEYSRL-NVSNTVMSKRKLNF 517 (797)
Q Consensus 497 ~~~f~~L-n~~g~kLSKRk~~~ 517 (797)
....+++ +.+|.||||+.++.
T Consensus 185 ~l~~p~l~~l~G~KMSKS~~~~ 206 (273)
T cd00395 185 GLTIPLVTKLDGPKFGKSESGP 206 (273)
T ss_pred EEeeccccCCCCCcCCCCCCCC
Confidence 6666664 78999999998764
No 102
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.0019 Score=78.66 Aligned_cols=90 Identities=29% Similarity=0.326 Sum_probs=68.1
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCch-----------------------hc---------hHH
Q 003764 279 FPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE-----------------------AE---------KKE 324 (797)
Q Consensus 279 FaPsPtG~LHIGharaal~n~~~Ar~--~~G~~iLRidDtDp~-----------------------re---------~~e 324 (797)
=||++||-||||||....+-+.++|. ..|.-+|=+-.||.. |+ .++
T Consensus 40 PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e 119 (877)
T COG0525 40 PPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEE 119 (877)
T ss_pred CCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Confidence 37999999999999999999999984 467666666666622 21 457
Q ss_pred HHHHHHHHHHHcCCC--CCcccCC--chhHHHHHHHHHHHHHcCcccc
Q 003764 325 YIDHIEEIVQWMGWE--PFKITYT--SDYFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 325 ~~~~I~e~L~wLGl~--pd~~~~q--Sd~~~~~ye~a~~LI~~G~AY~ 368 (797)
+...|.+.++.||+. |+..+++ -.+.....+...+|-++|+.|.
T Consensus 120 ~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr 167 (877)
T COG0525 120 SGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYR 167 (877)
T ss_pred HHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceee
Confidence 889999999999987 4444433 3455556667789999999996
No 103
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=96.98 E-value=0.031 Score=63.98 Aligned_cols=98 Identities=10% Similarity=0.030 Sum_probs=59.9
Q ss_pred CccEEecCcccccchhHHHHHHHHhCCCCCceeeeeec-cCCCceecccccccccccCccCCCCCcc---hhhHHHHHHc
Q 003764 466 NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPC---LMTLAGLRRR 541 (797)
Q Consensus 466 gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~~f~~L-n~~g~kLSKRk~~~~v~~g~v~gWdDPr---~~tL~~lrrr 541 (797)
+++.++-|.|=..+-..=.-|.+.++...|.....+.| +.+|+||||+.++. | |=|+. ...+.....
T Consensus 186 ~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG~KMsKS~~na-I-------~L~d~~tsp~~i~qki~- 256 (410)
T PRK13354 186 DVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADGTKMGKSAGGA-I-------WLDPEKTSPYEFYQFWM- 256 (410)
T ss_pred CCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCCCccCCCCCCc-e-------eccCCCCCHHHHHHHHH-
Confidence 67777888877666655556677788777754445554 78999999998752 2 33333 345555444
Q ss_pred CCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhhh
Q 003764 542 GVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELN 578 (797)
Q Consensus 542 G~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~ 578 (797)
..+...+..|+..+-. .+.+.++++.+.+..
T Consensus 257 ~~~D~~v~~~l~~~t~------l~~~ei~~l~~~~~~ 287 (410)
T PRK13354 257 NIDDRDVVKYLKLFTD------LSPDEIDELEAQLET 287 (410)
T ss_pred cCChHHHHHHHHHHhC------CCHHHHHHHHHHHhc
Confidence 3666667677665421 233445555555543
No 104
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=96.98 E-value=0.018 Score=65.26 Aligned_cols=90 Identities=17% Similarity=0.204 Sum_probs=52.1
Q ss_pred cHHHHHHhhhhcC-CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC----------CchhchHHHHHH
Q 003764 260 TKEVLDKHLEVTG-GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----------NPEAEKKEYIDH 328 (797)
Q Consensus 260 ~~~~~~~~~~~~~-g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDt----------Dp~re~~e~~~~ 328 (797)
|.+-|.+.++... -.|.+=| .|||.+||||...-.++|.--...|..+++=|-|. |++ ........
T Consensus 53 ~~eel~~~l~~~~~~~v~~G~--~PTG~lHLG~g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~~g~~l~-~i~~~~~~ 129 (383)
T PTZ00126 53 QPEELRELLKLKERPICYDGF--EPSGRMHIAQGILKAINVNKLTKAGCVFVFWVADWFALLNNKMGGDLE-KIRKVGEY 129 (383)
T ss_pred CHHHHHHHHhcCCCCEEEEEE--CCCCcccccchHhHhHHHHHHHhCCCeEEEEEccceeecCCCCCCCHH-HHHHHHHH
Confidence 3555666664321 1344444 67899999993211123322234466666655554 222 23445555
Q ss_pred HHHHHHHcCCCCCc--ccCCchhHHH
Q 003764 329 IEEIVQWMGWEPFK--ITYTSDYFQE 352 (797)
Q Consensus 329 I~e~L~wLGl~pd~--~~~qSd~~~~ 352 (797)
+...+..+|++|++ +.+||++...
T Consensus 130 ~~~~~~A~GlDp~k~~i~~qS~~v~~ 155 (383)
T PTZ00126 130 FIEVWKAAGMDMDNVRFLWASEEINK 155 (383)
T ss_pred HHHHHHHhCCCccceEEEECChhhhh
Confidence 67778899999974 7899986543
No 105
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=96.97 E-value=0.0012 Score=82.52 Aligned_cols=94 Identities=23% Similarity=0.174 Sum_probs=61.2
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEE---eecCC--------------------------------
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLR---YDDTN-------------------------------- 317 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~--~~G~~iLR---idDtD-------------------------------- 317 (797)
+++==+|.|||.|||||+++.++...+||. ..|.-+|. +|.+-
T Consensus 28 ~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~i~~~~i 107 (938)
T TIGR00395 28 FLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREEL 107 (938)
T ss_pred EEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhhccccchhhccCCHHHH
Confidence 445458999999999999999999999883 34443333 22221
Q ss_pred -----chhchHHHHHHHHHHHHHcCCC--CCcccCCch--hHHHHHHHHHHHHHcCcccc
Q 003764 318 -----PEAEKKEYIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 318 -----p~re~~e~~~~I~e~L~wLGl~--pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~ 368 (797)
|......|...|.++++.||+. |+..+.+.+ |.........+|.++|+.|.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~ 167 (938)
T TIGR00395 108 LKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVK 167 (938)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHHHCCCEec
Confidence 1111245567899999999986 555544444 22222233458999999884
No 106
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=96.93 E-value=0.0019 Score=81.18 Aligned_cols=94 Identities=23% Similarity=0.277 Sum_probs=67.6
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCc---------------------------------h
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP---------------------------------E 319 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~--~~G~~iLRidDtDp---------------------------------~ 319 (797)
+++==||.|||.||+||+++..+-+.+||. ..|.-+++.=..|- .
T Consensus 44 ~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~ 123 (975)
T PRK06039 44 VFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCR 123 (975)
T ss_pred EEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHH
Confidence 344448999999999999999999999984 46777766555441 0
Q ss_pred hchHHHHHHHHHHHHHcC--CCCCcccCCch--hHHHHHHHHHHHHHcCcccc
Q 003764 320 AEKKEYIDHIEEIVQWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 320 re~~e~~~~I~e~L~wLG--l~pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~ 368 (797)
....+|.+.+.+.++.|| ++|+..+++.+ |.+.......+|.++|++|.
T Consensus 124 ~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr 176 (975)
T PRK06039 124 ESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYK 176 (975)
T ss_pred HHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 123467888999999999 56777665554 33333334558999999885
No 107
>PLN02882 aminoacyl-tRNA ligase
Probab=96.89 E-value=0.002 Score=82.07 Aligned_cols=90 Identities=20% Similarity=0.171 Sum_probs=67.4
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCch----------------h-----------------chH
Q 003764 279 FPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE----------------A-----------------EKK 323 (797)
Q Consensus 279 FaPsPtG~LHIGharaal~n~~~Ar~--~~G~~iLRidDtDp~----------------r-----------------e~~ 323 (797)
=||.+||.|||||+++.++-+.+||. ..|.-+++.-.+|-. + ...
T Consensus 45 gPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~ 124 (1159)
T PLN02882 45 GPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVT 124 (1159)
T ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHH
Confidence 38999999999999999999999984 467777776666510 0 134
Q ss_pred HHHHHHHHHHHHcC--CCCCcccCCch--hHHHHHHHHHHHHHcCcccc
Q 003764 324 EYIDHIEEIVQWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 324 e~~~~I~e~L~wLG--l~pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~ 368 (797)
.|.+.+.+.++.|| ++|+..|++.+ |.........+|.++|+.|.
T Consensus 125 ~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr 173 (1159)
T PLN02882 125 RYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYK 173 (1159)
T ss_pred HHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 67788899999999 67887665554 44344445568999999874
No 108
>PRK04028 glutamyl-tRNA(Gln) amidotransferase subunit E; Validated
Probab=96.87 E-value=0.022 Score=68.06 Aligned_cols=163 Identities=20% Similarity=0.269 Sum_probs=118.4
Q ss_pred HHHHH-HhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCCC-------CcCchhHHHHHHh
Q 003764 12 ILELF-LKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTN-------ALVHRPTLLLYIV 83 (797)
Q Consensus 12 ~~~~f-~~iGL~e~kaket~KN~kls~~L~~ii~~a~~~~~~dk~~g~ll~~lat~~~~~-------~~~~~~~l~~~I~ 83 (797)
..+.| ...|||+.-|.-++.++. +.-+.+++.. . .-++...+.|.+....+... ...+...++..|.
T Consensus 458 ~~~r~~~~ygls~~~a~~L~~~~~-~~~f~~~~~~-~---~~~~~~anwl~~~~~~l~~~~~~~~~i~~~~l~~l~~~~~ 532 (630)
T PRK04028 458 KVERLIKEYGLSEELAEQLAYSER-LDLFEELVKK-G---VDPTLIASTLENTLKELRREGVDVENITDEHIEEVFKLVS 532 (630)
T ss_pred HHHHHHHHcCCCHHHHHHHHCCch-HHHHHHHHHh-C---CCHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHHHHHHH
Confidence 34445 458999999988877765 6666666543 1 13466777777765433321 2356788899999
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccccchhhhHHHHHhhC
Q 003764 84 SSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRL 163 (797)
Q Consensus 84 ~g~iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~k~~~~~~ry~~n~g~ll~~vr~~L 163 (797)
+|+|.. .+....++-+-++ ..-+.++.-++.|.. .+|.++|++.|+++|++|.+.+.+.+ ...+|.+||+|.+..
T Consensus 533 ~~~is~-~~ak~v~~~~~~~--~~~~~~~IIee~gl~-qiSD~eL~~iV~evIaenpk~V~~gk-~K~~G~lmGqVMk~t 607 (630)
T PRK04028 533 EGKIAK-EAIEEILKELAEN--PGKSAEEAAEELGLK-GLSEEEVEKIIDEIVEENIDFVKEKG-MGAFGPLMGEVMAEL 607 (630)
T ss_pred cCCccH-HHHHHHHHHHHhc--CCCCHHHHHHHhCcc-cCCHHHHHHHHHHHHHhChHhHhccC-HhHHHHHHHHHHHHh
Confidence 999986 5666677644333 236789999999976 57999999999999999877665533 345899999997764
Q ss_pred C-CCChhhHHHHHHHHHHHhcC
Q 003764 164 P-WADPKIVKQLIDARMYELLG 184 (797)
Q Consensus 164 k-WAd~k~vK~~vd~~~~~llg 184 (797)
+ =|||+.|.+.|.+.+.+.+|
T Consensus 608 kGkAdp~~V~~llke~L~~~~~ 629 (630)
T PRK04028 608 RGKADGKLVSEILREKLKEILN 629 (630)
T ss_pred cCCCCHHHHHHHHHHHHHHHhc
Confidence 4 49999999999988776654
No 109
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=96.74 E-value=0.044 Score=62.66 Aligned_cols=88 Identities=20% Similarity=0.303 Sum_probs=55.7
Q ss_pred HHHHHHhhhhcCCeEEEEeCCCCCC-cCchhHHHHHHHHHHHHHHcCCEEEEEeec----C-Cch-h----------chH
Q 003764 261 KEVLDKHLEVTGGNVLTRFPPEPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDD----T-NPE-A----------EKK 323 (797)
Q Consensus 261 ~~~~~~~~~~~~g~v~tRFaPsPtG-~LHIGharaal~n~~~Ar~~~G~~iLRidD----t-Dp~-r----------e~~ 323 (797)
.+-+.++++...-.+.+=| .||| .|||||+.+ +.++..-...|...++=|-| | ||. + +..
T Consensus 22 ~~~l~~~l~~~~~~vy~G~--dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~ 98 (408)
T PRK05912 22 EEELEEKLAKEPLRIYLGF--DPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVA 98 (408)
T ss_pred HHHHHHHhhCCCCEEEEee--cCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHH
Confidence 5556666763223344444 5778 499999995 56666666667666666655 2 453 1 234
Q ss_pred HHHHHHHHHHHHcCCCCCc----ccCCchhHHH
Q 003764 324 EYIDHIEEIVQWMGWEPFK----ITYTSDYFQE 352 (797)
Q Consensus 324 e~~~~I~e~L~wLGl~pd~----~~~qSd~~~~ 352 (797)
.+.+.|.+.+ +.|++|++ +.+||+.+..
T Consensus 99 ~n~~~i~~ql-~~~ld~~k~~~~i~~nsd~~~~ 130 (408)
T PRK05912 99 ENAETIKEQL-FKFLDFEKDGAEIVNNSDWLGK 130 (408)
T ss_pred HHHHHHHHHH-HHhcCcCcCcEEEEECCCcCCc
Confidence 5556665555 77888865 7889987653
No 110
>PRK05477 gatB aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated
Probab=96.64 E-value=0.047 Score=63.44 Aligned_cols=157 Identities=21% Similarity=0.264 Sum_probs=113.2
Q ss_pred HHHH-HhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHH-HHhhCCC---------CCcCchhHHHHH
Q 003764 13 LELF-LKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT-VATKYPT---------NALVHRPTLLLY 81 (797)
Q Consensus 13 ~~~f-~~iGL~e~kaket~KN~kls~~L~~ii~~a~~~~~~dk~~g~ll~~-lat~~~~---------~~~~~~~~l~~~ 81 (797)
.+.| ...||++.-|.-++.++.++.-+.+++.. +. .++...+.|.+ |...++. -...+...|+..
T Consensus 302 ~~rl~~~ygls~~~a~~L~~~~~~~~~fe~~~~~-~~---~~k~~anwl~~el~~~l~~~~~~~~~~~i~~~~l~~Li~l 377 (474)
T PRK05477 302 RARFVEEYGLSEYDARVLTSDKELADYFEAVVAA-GA---DAKLAANWLMGELLGLLNEEGIEIEESPITPEQLAELIKL 377 (474)
T ss_pred HHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHc-CC---CHHHHHHHHHHHHHHHHHHCCCChhhcCCCHHHHHHHHHH
Confidence 4445 45899999999999998999888887654 22 23555555444 4333321 123578889999
Q ss_pred HhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHH-HHHHHHHHHHHhhhhHHHhhc--cccchhhhHHH
Q 003764 82 IVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSE-DIELTVNEVFEENKNTILELR--YRTNVGDLFAH 158 (797)
Q Consensus 82 I~~g~iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~E-qI~~~V~~~i~~~k~~~~~~r--y~~n~g~ll~~ 158 (797)
|.+|+|.+ .+....+.-+... ..+.++.-++.|.+. ||.+ +|++.|+++|++|.+.+.+-| -...+|-|||+
T Consensus 378 v~~g~Is~-~~ak~vl~~~~~~---~~~~~~ii~~~gl~~-isd~~~l~~iv~evi~~np~~v~~~~~Gk~~~~~~lvG~ 452 (474)
T PRK05477 378 IDDGTISG-KIAKEVFEEMLET---GGDPDEIVEEKGLKQ-ISDEGALEAIVDEVLAANPKAVEDYKAGKEKALGFLVGQ 452 (474)
T ss_pred HHcCCccH-HHHHHHHHHHHhc---CCCHHHHHHHcCCcc-cCCHHHHHHHHHHHHHHCHHHHHHHHcccHHHHHHHHHH
Confidence 99999986 5667777655443 367999999999875 5555 999999999999998777642 22337888888
Q ss_pred HHhh-CCCCChhhHHHHHHHH
Q 003764 159 VRKR-LPWADPKIVKQLIDAR 178 (797)
Q Consensus 159 vr~~-LkWAd~k~vK~~vd~~ 178 (797)
|-+. =--|||+.|.+.+.+.
T Consensus 453 vMk~t~GkAdp~~v~~ll~e~ 473 (474)
T PRK05477 453 VMKATKGKANPKLVNELLKEK 473 (474)
T ss_pred HHHHhcCCCCHHHHHHHHHHh
Confidence 8444 4569999999888654
No 111
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=96.60 E-value=0.038 Score=67.54 Aligned_cols=159 Identities=16% Similarity=0.272 Sum_probs=114.3
Q ss_pred HHHHH-hcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHH-HHHHHhhCCCC-------CcCchhHHHHHHh
Q 003764 13 LELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNL-LYTVATKYPTN-------ALVHRPTLLLYIV 83 (797)
Q Consensus 13 ~~~f~-~iGL~e~kaket~KN~kls~~L~~ii~~a~~~~~~dk~~g~l-l~~lat~~~~~-------~~~~~~~l~~~I~ 83 (797)
.+.|. ..||++.-|.-++.++.++.-+++++.... -++...+. +..|...++.. ...|...|+..|.
T Consensus 600 ~~Rlv~eyGLs~~dA~~L~~d~~la~yFE~~v~~~~----~pk~aANWl~~El~~~Lne~~i~~~~l~pe~LaeLv~lV~ 675 (771)
T PRK14703 600 FDRYLSELGLNEEDARTLARDPALAAFFEAALAAGK----SPVQLANWVVNDLAGLLRDRELAALPFTPAALARLVALVD 675 (771)
T ss_pred HHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHhcCCCccCCCCHHHHHHHHHHHH
Confidence 34444 589999999999999999888888876421 23444443 33344333322 2357899999999
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhc--cccchhhhHHHHHh
Q 003764 84 SSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELR--YRTNVGDLFAHVRK 161 (797)
Q Consensus 84 ~g~iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~k~~~~~~r--y~~n~g~ll~~vr~ 161 (797)
+|+|.. .+....++-+-.. .-+.++.-++.|.+.+-.+++|++.|+++|++|.+.+.+-| -..-+|-|||+|=+
T Consensus 676 ~g~IS~-~~AK~VL~~m~~~---~~~p~~IIee~GL~qisDe~~Le~iV~eVI~~NP~~Ve~yk~GK~kalgfLVGqVMK 751 (771)
T PRK14703 676 AGRIST-RIAKDVLAELAAS---GGDPEAIVEAKGLEQVSDAGALEPIVEEVLAAHPDKVAAYRAGKTKLLGFFVGQVMR 751 (771)
T ss_pred cCCccH-HHHHHHHHHHHhc---CCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999975 6667777766543 24788999999998765568899999999999999877644 12337777777754
Q ss_pred hC-CCCChhhHHHHHHHHH
Q 003764 162 RL-PWADPKIVKQLIDARM 179 (797)
Q Consensus 162 ~L-kWAd~k~vK~~vd~~~ 179 (797)
.. ==|||+.|.+.|.+.+
T Consensus 752 ~tkGKAdP~~V~elLke~L 770 (771)
T PRK14703 752 ETGGKANPQQVRELLQKKL 770 (771)
T ss_pred HhCCCCCHHHHHHHHHHHh
Confidence 43 3589999998887653
No 112
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.0019 Score=75.78 Aligned_cols=93 Identities=23% Similarity=0.359 Sum_probs=66.9
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHc--CCEEEEE----------------eecCCchhchHHHHHHHHHHHH
Q 003764 273 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKER--GGYCYLR----------------YDDTNPEAEKKEYIDHIEEIVQ 334 (797)
Q Consensus 273 g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~--~G~~iLR----------------idDtDp~re~~e~~~~I~e~L~ 334 (797)
.+++.-.=|-|+|-|||||+|...+++.+||.| .|.=++. =..++|.--...-++.+.+.|.
T Consensus 58 ~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql~ 137 (876)
T KOG0435|consen 58 KKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQLK 137 (876)
T ss_pred CceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHHH
Confidence 346666778999999999999999999999943 4543332 1234555567788899999999
Q ss_pred HcCCC--CCc-ccCCchhHHHHHHH----HHHHHHcCcccc
Q 003764 335 WMGWE--PFK-ITYTSDYFQELYEL----AVELIRRGHAYV 368 (797)
Q Consensus 335 wLGl~--pd~-~~~qSd~~~~~ye~----a~~LI~~G~AY~ 368 (797)
.||+. ||. ++-.. +.||.+ ..+|-++|+||.
T Consensus 138 ~lg~~FDWdrEiSTC~---PdYYKWTQwiFlkLfe~GLAYq 175 (876)
T KOG0435|consen 138 SLGISFDWDREISTCE---PDYYKWTQWIFLKLFEKGLAYQ 175 (876)
T ss_pred HcCcccccccccccCC---cchhHHHHHHHHHHHHhhhhhc
Confidence 99986 664 32222 345544 358999999995
No 113
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=96.56 E-value=0.0053 Score=77.09 Aligned_cols=94 Identities=21% Similarity=0.154 Sum_probs=64.7
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC-------------------------chh-------
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN-------------------------PEA------- 320 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~--~~G~~iLRidDtD-------------------------p~r------- 320 (797)
++.==||.+||.||||||++.++-+.++|. ..|.-++.+=..| +..
T Consensus 57 ~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~ 136 (961)
T PRK13804 57 VLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECRE 136 (961)
T ss_pred EEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHH
Confidence 445558999999999999999999999984 3555444433333 110
Q ss_pred chHHHHHHHHHHHHHcCCC--CCcccCCch--hHHHHHHHHHHHHHcCcccc
Q 003764 321 EKKEYIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 321 e~~e~~~~I~e~L~wLGl~--pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~ 368 (797)
...++++.+.++++.||+. |+..+.+.+ |.........+|.++|++|.
T Consensus 137 ~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr 188 (961)
T PRK13804 137 YALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYR 188 (961)
T ss_pred HHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 1335677888999999986 766655544 33333344568999999885
No 114
>PLN02751 glutamyl-tRNA(Gln) amidotransferase
Probab=96.41 E-value=0.084 Score=62.15 Aligned_cols=158 Identities=16% Similarity=0.172 Sum_probs=112.3
Q ss_pred HHHHHhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHH-HHHHhhCCC---------CCcCchhHHHHHH
Q 003764 13 LELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLL-YTVATKYPT---------NALVHRPTLLLYI 82 (797)
Q Consensus 13 ~~~f~~iGL~e~kaket~KN~kls~~L~~ii~~a~~~~~~dk~~g~ll-~~lat~~~~---------~~~~~~~~l~~~I 82 (797)
.+.|...||++.-|.-++.++.++.-+++++.. +. -++...+.| ..|...++. -...|...|+.+|
T Consensus 370 ~~Rl~~~gLs~~dA~~L~~~~~~a~ffe~~~~~-~~---~~k~~anwi~~el~~~l~~~~~~i~~~~l~p~~laeLi~li 445 (544)
T PLN02751 370 RRRYENMGLSMQDVLFLANDKNVAEFFDATLAK-GA---DAKLAANWIMGDIAAYLKNEKVSISEIKLTPKELAELIASI 445 (544)
T ss_pred HHHHHHcCCCHHHHHHHHcCcHHHHHHHHHHHc-CC---CHHHHHHHHHHHHHHHHHhCCCChhhcCCCHHHHHHHHHHH
Confidence 455678999999999999999888888887764 21 235554433 333222221 1235789999999
Q ss_pred hcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhc---cccchhhhHHHH
Q 003764 83 VSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELR---YRTNVGDLFAHV 159 (797)
Q Consensus 83 ~~g~iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~k~~~~~~r---y~~n~g~ll~~v 159 (797)
.+|.|... +-...+.=+-. ..-+.+++-++-|...+-.+++|++.|+++|++|.+.+.+-| -+. +|-|+|+|
T Consensus 446 ~~g~Is~~-~AK~vl~~~~~---~~~~p~~iiee~gL~qisD~~~l~~iv~evi~~np~~V~~~k~Gk~k~-~g~lvGqV 520 (544)
T PLN02751 446 KDGTISGK-IGKEILPELLA---KGGTVKGLVEEKGLVQISDPAEIEAMVDKVLEENPKQLEQYRGGKTKL-QGFFAGQV 520 (544)
T ss_pred HcCCccHH-HHHHHHHHHHh---CCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHHH-HHHHHHHH
Confidence 99999874 44555554433 235789999999988644488999999999999998877644 233 78888888
Q ss_pred HhhCC-CCChhhHHHHHHHHH
Q 003764 160 RKRLP-WADPKIVKQLIDARM 179 (797)
Q Consensus 160 r~~Lk-WAd~k~vK~~vd~~~ 179 (797)
-+..+ =|||+.|.+.+.+.+
T Consensus 521 MK~tkGkAnp~~v~~iL~e~L 541 (544)
T PLN02751 521 MKASKGKANPGLLNKILMEKL 541 (544)
T ss_pred HHHhCCCCCHHHHHHHHHHHh
Confidence 55533 599999999887664
No 115
>TIGR00133 gatB glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit. The heterotrimer GatABC is responsible for transferring the NH2 group that converts Glu to Gln, or Asp to Asn after the Glu or Asp has been ligated to the tRNA for Gln or Asn, respectively. In Lactobacillus, GatABC is responsible only for tRNA(Gln). In the Archaea, GatABC is responsible only for tRNA(Asn), while GatDE is responsible for tRNA(Gln). In lineages that include Thermus, Chlamydia, or Acidithiobacillus, the GatABC complex catalyzes both.
Probab=96.29 E-value=0.091 Score=61.17 Aligned_cols=156 Identities=15% Similarity=0.168 Sum_probs=110.2
Q ss_pred HHHhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHH-HHHhhCCC---------CCcCchhHHHHHHhc
Q 003764 15 LFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLY-TVATKYPT---------NALVHRPTLLLYIVS 84 (797)
Q Consensus 15 ~f~~iGL~e~kaket~KN~kls~~L~~ii~~a~~~~~~dk~~g~ll~-~lat~~~~---------~~~~~~~~l~~~I~~ 84 (797)
+....||++.-|.-++.++.++.-+.+++.... -++...+.|. .+...++. -...|...|+..|.+
T Consensus 308 ~~~~ygls~~~a~~L~~~~~~~~~fe~~~~~~~----~~k~~anwl~~el~~~l~~~~~~i~~~~l~p~~l~~Li~lv~~ 383 (478)
T TIGR00133 308 LKKEYGLSEQDAKVLTSDLTLADYFEEVVKLIG----DPKLAANWICIELLGVLNKLQISLAECGLKPSDLAELIKLIKE 383 (478)
T ss_pred HHHHcCCCHHHHHHHHcChHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHCCCCHhhcCCCHHHHHHHHHHHHc
Confidence 446789999999999999999998888765422 2355555443 22222211 123578899999999
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHh--hccccchhhhHHHHHhh
Q 003764 85 SKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILE--LRYRTNVGDLFAHVRKR 162 (797)
Q Consensus 85 g~iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~k~~~~~--~ry~~n~g~ll~~vr~~ 162 (797)
|+|.. .+....+.-+-.. .-+.+++-++-|.+.+-.+++|++.|+++|++|.+.+.+ +|-..-+|-|+|+|=+.
T Consensus 384 g~Is~-~~ak~vl~~~~~~---~~~~~~ii~~~gl~~isd~~~l~~iv~evl~~np~~v~~~k~Gk~k~~~~lvGqvMk~ 459 (478)
T TIGR00133 384 GKISG-KSAKQLIEEMLEN---GGDPSKLIEELGLEQISDEKELIKIIEEVIKENPKEVEKYLSGKERALKFLVGQVMKR 459 (478)
T ss_pred CCCcH-HHHHHHHHHHHhc---CCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99986 5566666655443 357899999999886444458999999999999887765 12223377788887443
Q ss_pred -CCCCChhhHHHHHHHH
Q 003764 163 -LPWADPKIVKQLIDAR 178 (797)
Q Consensus 163 -LkWAd~k~vK~~vd~~ 178 (797)
=-=|||+.|.+.+.+.
T Consensus 460 t~GkA~p~~v~~~l~~~ 476 (478)
T TIGR00133 460 TRGRANPQLVNEILKEM 476 (478)
T ss_pred hCCCCCHHHHHHHHHHH
Confidence 4569999999888754
No 116
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=95.66 E-value=0.053 Score=49.90 Aligned_cols=39 Identities=54% Similarity=0.909 Sum_probs=29.1
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchh
Q 003764 277 TRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA 320 (797)
Q Consensus 277 tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~r 320 (797)
+.|+.++ |++|+||...+-. |......+++.|.|.++..
T Consensus 2 ~~~~G~F-dp~H~GH~~l~~~----a~~~~d~~i~~i~~~~~~~ 40 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKLICR----AKGIADQCVVRIDDNPPVK 40 (105)
T ss_pred EEeCCCC-CCCCHHHHHHHHH----HHHhCCcEEEEEcCCCccc
Confidence 5789999 9999999997432 3333467889999877554
No 117
>PLN02959 aminoacyl-tRNA ligase
Probab=95.57 E-value=0.024 Score=72.15 Aligned_cols=31 Identities=35% Similarity=0.415 Sum_probs=26.4
Q ss_pred eEEEEeC-CCCCCcCchhHHHHHHHHHHHHHH
Q 003764 274 NVLTRFP-PEPNGYLHIGHAKAMFVDFGLAKE 304 (797)
Q Consensus 274 ~v~tRFa-PsPtG~LHIGharaal~n~~~Ar~ 304 (797)
+...=|| |.+||.|||||+++..+-..+||.
T Consensus 46 kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Ry 77 (1084)
T PLN02959 46 KFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAY 77 (1084)
T ss_pred cEEEeCCCCCCCCCcchhhHHHHHHHHHHHHH
Confidence 3556666 999999999999999999988883
No 118
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.32 E-value=0.037 Score=67.03 Aligned_cols=92 Identities=29% Similarity=0.334 Sum_probs=68.4
Q ss_pred EeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCch------------------------h---------ch
Q 003764 278 RFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE------------------------A---------EK 322 (797)
Q Consensus 278 RFaPsPtG~LHIGharaal~n~~~Ar~--~~G~~iLRidDtDp~------------------------r---------e~ 322 (797)
==||+.||.||||||-++.+-..+||. ..|.-+|=+-.||.. | -.
T Consensus 81 ~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk 160 (995)
T KOG0432|consen 81 LPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWK 160 (995)
T ss_pred cCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHH
Confidence 337899999999999999999999984 467777777777732 1 14
Q ss_pred HHHHHHHHHHHHHcCCC--CCcccCCch-hHH-HHHHHHHHHHHcCccccC
Q 003764 323 KEYIDHIEEIVQWMGWE--PFKITYTSD-YFQ-ELYELAVELIRRGHAYVD 369 (797)
Q Consensus 323 ~e~~~~I~e~L~wLGl~--pd~~~~qSd-~~~-~~ye~a~~LI~~G~AY~C 369 (797)
.+|-..|.+.|+.||.. |+...|.-| .+. ..-+...+|-++|..|..
T Consensus 161 ~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~ 211 (995)
T KOG0432|consen 161 EEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRA 211 (995)
T ss_pred HHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEec
Confidence 56778899999999965 766554443 222 334667799999999973
No 119
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=95.02 E-value=0.054 Score=68.13 Aligned_cols=65 Identities=17% Similarity=0.113 Sum_probs=49.9
Q ss_pred CCcee-eeeeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHH
Q 003764 494 QPYVW-EYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (797)
Q Consensus 494 ~P~~~-~f~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 572 (797)
.|..| ++|++..+|+|||||+|| ..++..+.+. |.++++|.||+..|-...+..++.+.+.+.
T Consensus 604 ~Pk~i~~~G~vl~~G~KMSKSlGN---------------vI~p~d~i~~-yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~ 667 (938)
T TIGR00395 604 WPRGIVVNGYVMLEGKKMSKSKGN---------------VLTLEQAVEK-FGADVARLYIADAAETVQDADWKESEVEGT 667 (938)
T ss_pred cCcEEEEeceEEeCCccccCcCCC---------------CCCHHHHHHH-cChHHHHHHHHhcCCCCCCCCcCHHHHHHH
Confidence 35444 468888899999999998 3566777766 999999999998876556667777777665
Q ss_pred HH
Q 003764 573 IR 574 (797)
Q Consensus 573 ir 574 (797)
.+
T Consensus 668 ~~ 669 (938)
T TIGR00395 668 IL 669 (938)
T ss_pred HH
Confidence 44
No 120
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=94.44 E-value=0.02 Score=66.39 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=61.3
Q ss_pred hhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhhhccCCceeeEeccceEEEEc
Q 003764 532 LMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN 597 (797)
Q Consensus 532 ~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~dp~kl~i~n 597 (797)
..++..++..|+.|+|+.+|++.+||+.+...+....+++.+.+|+...+.+..+.||..||.|.|
T Consensus 257 ~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~fd~~~~~~~~~~fd~~kL~~~n 322 (472)
T COG0008 257 AVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPAAFDRKKLDWLN 322 (472)
T ss_pred ccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhhhhhhhhcccccccHHHhHhhh
Confidence 467888999999999999999999999877778889999999999999999999999999999888
No 121
>PLN02886 aminoacyl-tRNA ligase
Probab=94.40 E-value=0.088 Score=59.75 Aligned_cols=92 Identities=16% Similarity=0.129 Sum_probs=60.2
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC------chhchHHHHHHHHHHHHHcCCCCCc--ccCC
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN------PEAEKKEYIDHIEEIVQWMGWEPFK--ITYT 346 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtD------p~re~~e~~~~I~e~L~wLGl~pd~--~~~q 346 (797)
|.+=| .|||.+||||...++-+|..-.. +..+++=|-|.- ...+..++...+..++-.+|++|.+ ++.|
T Consensus 49 v~sGi--qPSG~lHLGnylGai~~~v~lQ~-~~~~~~~IADlHAlt~~~~~~~lr~~~~~~~a~~lA~GlDP~ks~if~Q 125 (389)
T PLN02886 49 VVSGV--QPTGSIHLGNYLGAIKNWVALQE-TYDTFFCVVDLHAITLPHDPRELGKATRSTAAIYLACGIDPSKASVFVQ 125 (389)
T ss_pred EEEEE--CCCCccHHHHHHHHHHHHHHHhc-cCCEEEEEecHHHhhCCCCHHHHHHHHHHHHHHHHHcCcCccceEEEEe
Confidence 44444 56799999999988888866544 555666566642 1223445555677788899999984 7899
Q ss_pred chhHHHHHHHHHHHHHcCccccCCCCHHHHH
Q 003764 347 SDYFQELYELAVELIRRGHAYVDHQTPEEIK 377 (797)
Q Consensus 347 Sd~~~~~ye~a~~LI~~G~AY~C~cs~eel~ 377 (797)
|+. ..+.+++-. +.|.++--+|.
T Consensus 126 S~v-~e~~eL~wi-------l~~~t~~g~L~ 148 (389)
T PLN02886 126 SHV-PAHAELMWL-------LSCSTPIGWLN 148 (389)
T ss_pred CCC-chhHHHHHH-------HHhhCcHHHHH
Confidence 985 334444322 45666665554
No 122
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=94.17 E-value=0.085 Score=59.91 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=50.0
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC----Cc---hhchHHHHHHHHHHHHHcCCCCCc--ccCCchh
Q 003764 282 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NP---EAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDY 349 (797)
Q Consensus 282 sPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDt----Dp---~re~~e~~~~I~e~L~wLGl~pd~--~~~qSd~ 349 (797)
.|||.+||||.-.++-+|. ..+.++.+++=|-|. ++ ..+.......+..++-++|++|++ ++.||+.
T Consensus 10 qPSG~~HLGnylG~ik~wv-~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~QS~v 85 (398)
T PRK12283 10 RPTGRLHLGHYHGVLKNWV-KLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQSKV 85 (398)
T ss_pred CCCCcchHHHHHHHHHHHH-HHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCCc
Confidence 5789999999999988876 345577776667664 21 234445566678889999999974 7899987
No 123
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.92 E-value=0.19 Score=57.69 Aligned_cols=87 Identities=18% Similarity=0.116 Sum_probs=57.9
Q ss_pred CCCCcCchhHHHHHHHHHHHHHH-cCCEEEEEeecC-------CchhchHHHHHHHHHHHHHcCCCCCc--ccCCchhHH
Q 003764 282 EPNGYLHIGHAKAMFVDFGLAKE-RGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 351 (797)
Q Consensus 282 sPtG~LHIGharaal~n~~~Ar~-~~G~~iLRidDt-------Dp~re~~e~~~~I~e~L~wLGl~pd~--~~~qSd~~~ 351 (797)
.|||.+||||...++-||+-... .+..+++=|-|. ||++ .......+..++-.+|++|++ +++||+--
T Consensus 10 qPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~-lr~~~~e~aa~~LA~GlDPek~~if~QSdvp- 87 (431)
T PRK12284 10 TTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPAR-IQRSTLEIAATWLAAGLDPERVTFYRQSDIP- 87 (431)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHH-HHHHHHHHHHHHHHhCCCccceEEEECCcch-
Confidence 68999999999999989887754 455666656654 3433 333444567778889999985 78999853
Q ss_pred HHHHHHHHHHHcCccccCCCCHHHHH
Q 003764 352 ELYELAVELIRRGHAYVDHQTPEEIK 377 (797)
Q Consensus 352 ~~ye~a~~LI~~G~AY~C~cs~eel~ 377 (797)
...+++-.| .|.++--+|.
T Consensus 88 eh~EL~wiL-------~~it~~g~L~ 106 (431)
T PRK12284 88 EIPELTWLL-------TCVAGKGLLN 106 (431)
T ss_pred hHHHHHHHH-------HhhhhHHHHH
Confidence 344444332 4655555554
No 124
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=93.63 E-value=0.28 Score=48.17 Aligned_cols=102 Identities=25% Similarity=0.298 Sum_probs=72.4
Q ss_pred CchhHHHHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHh--hcccc
Q 003764 73 VHRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILE--LRYRT 150 (797)
Q Consensus 73 ~~~~~l~~~I~~g~iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~k~~~~~--~ry~~ 150 (797)
.+...|+.++.+|+|.. .+....+..+-++ .-+.++.-+..|.+..-++++|++.|+++|++|.+++.+ .+=.-
T Consensus 43 ~~l~~li~l~~~~~Is~-~~ak~ll~~~~~~---~~~~~~ii~~~~l~~i~d~~el~~~v~~vi~~n~~~v~~~~~Gk~k 118 (148)
T PF02637_consen 43 EHLAELINLLEDGKISK-KSAKELLRELLEN---GKSPEEIIEENGLWQISDEEELEALVEEVIAENPKEVEDYRNGKKK 118 (148)
T ss_dssp HHHHHHHHHHHTTSSGH-HHHHHHHHHHHHH---TS-HHHHHHHTT---B--CCHHHHHHHHHHHC-HHHHHHHCTT-TT
T ss_pred HHHHHHHHHHHcCCCCH-HHHHHHHHHHHHc---CCCHHHHHHHcCCCcCCCHHHHHHHHHHHHHHCHHHHHHHHcChHH
Confidence 57888999999999975 6778888877654 357789999999988777799999999999999776542 22223
Q ss_pred chhhhHHHHHhhCC-CCChhhHHHHHHHH
Q 003764 151 NVGDLFAHVRKRLP-WADPKIVKQLIDAR 178 (797)
Q Consensus 151 n~g~ll~~vr~~Lk-WAd~k~vK~~vd~~ 178 (797)
-+|-|+|+|-+..+ =|||+.|++.+.+.
T Consensus 119 ~~~~LvGqvMk~t~G~adp~~v~~~l~~~ 147 (148)
T PF02637_consen 119 AIGFLVGQVMKETKGRADPKEVKELLKEK 147 (148)
T ss_dssp CCHHHHHHHHHCTTS-C-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 37888888865544 79999999998764
No 125
>COG0064 GatB Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Translation, ribosomal structure and biogenesis]
Probab=93.35 E-value=2 Score=49.93 Aligned_cols=157 Identities=18% Similarity=0.238 Sum_probs=104.3
Q ss_pred HHHhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHH-HHHhhCC---------CCCcCchhHHHHHHhc
Q 003764 15 LFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLY-TVATKYP---------TNALVHRPTLLLYIVS 84 (797)
Q Consensus 15 ~f~~iGL~e~kaket~KN~kls~~L~~ii~~a~~~~~~dk~~g~ll~-~lat~~~---------~~~~~~~~~l~~~I~~ 84 (797)
.-...|||+.-|.-++.++.++.-+..+.....- .+...+.+. .|+..+. +-..++...|+..|.+
T Consensus 310 ~~~~~gls~~dA~~L~~d~~la~~fe~~~~~~~~----~k~~anW~~~el~~~Ln~~~~~i~~~~~~p~~la~Li~li~~ 385 (483)
T COG0064 310 YIKEYGLSEYDARVLTSDKELADYFEEAVKAGAD----AKLAANWLTNELLGLLNKAGITLEESPLTPEQLAELIKLIDE 385 (483)
T ss_pred HHHHcCCCHHHHHHHHcCHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHhcCCChhhcCCCHHHHHHHHHHHHc
Confidence 3448999999999999999988888777543331 233333221 1222221 1223578999999999
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhcc--ccchhhhHHHH-Hh
Q 003764 85 SKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRY--RTNVGDLFAHV-RK 161 (797)
Q Consensus 85 g~iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~k~~~~~~ry--~~n~g~ll~~v-r~ 161 (797)
|+|.+..--+....-+.+. .-+..+.-++-|...+-.+++|+++|+++|++|...+++-|= ..-+|=++|+| |+
T Consensus 386 g~IS~k~AK~~v~~~~~~~---~~~p~~iie~~gL~qisD~~~l~~~V~evia~Np~~ve~yk~GK~~~~~f~vGQVMk~ 462 (483)
T COG0064 386 GTISGKIAKELVFEILANG---GKDPEEIIEEKGLVQISDEGELEKIVDEVLAENPKAVEDYKSGKEKALGFLVGQVMKA 462 (483)
T ss_pred CCccHHHHHHHHHHHHHcc---CCCHHHHHHhcCccccCCHHHHHHHHHHHHHHCHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9998754444455545543 258899999999998677779999999999999987765332 11244445554 33
Q ss_pred hCCCCChhhHHHHHHHH
Q 003764 162 RLPWADPKIVKQLIDAR 178 (797)
Q Consensus 162 ~LkWAd~k~vK~~vd~~ 178 (797)
.=-=|||..+...|-+.
T Consensus 463 T~GkAnP~~v~~ll~~~ 479 (483)
T COG0064 463 TKGKANPQQVNELLKEK 479 (483)
T ss_pred hcCCCCHHHHHHHHHHH
Confidence 33457888877776654
No 126
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=93.33 E-value=0.23 Score=62.25 Aligned_cols=61 Identities=16% Similarity=0.063 Sum_probs=44.9
Q ss_pred eeeeeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHH
Q 003764 498 WEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 574 (797)
Q Consensus 498 ~~f~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir 574 (797)
..+|++..+|+|||||+||. .+...+.++ |.++++|.||+..|-...+..++.+.+....+
T Consensus 566 ~~hG~vl~~G~KMSKS~GNv---------------Vdp~eii~~-yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~~ 626 (897)
T PRK12300 566 VVNGFVLLEGKKMSKSKGNV---------------IPLRKAIEE-YGADVVRLYLTSSAELLQDADWREKEVESVRR 626 (897)
T ss_pred EEcceEEECCccccCcCCCC---------------CCHHHHHHH-cChHHHHHHHHhCCCCCCCCccCHHHHHHHHH
Confidence 34678777999999999983 455566655 88999999999876655666677666655533
No 127
>smart00845 GatB_Yqey GatB domain. This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Probab=92.91 E-value=0.82 Score=45.00 Aligned_cols=101 Identities=27% Similarity=0.371 Sum_probs=76.3
Q ss_pred CchhHHHHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCH-HHHHHHHHHHHHhhhhHHHhhc--cc
Q 003764 73 VHRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSS-EDIELTVNEVFEENKNTILELR--YR 149 (797)
Q Consensus 73 ~~~~~l~~~I~~g~iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~-EqI~~~V~~~i~~~k~~~~~~r--y~ 149 (797)
.+...|+..|.+|+|.. .+....++.+-++. -+..++-++.|.+- +|. +++++.|+++|++|.+.+.+-| -.
T Consensus 42 ~~l~~li~lv~~g~It~-~~ak~vl~~~~~~~---~~~~~ii~~~~l~~-isd~~el~~~v~~vi~~~~~~v~~~~~g~~ 116 (147)
T smart00845 42 EHLAELLKLIEDGTISG-KIAKEVLEELLESG---KSPEEIVEEKGLKQ-ISDEGELEAIVDEVIAENPKAVEDYRAGKK 116 (147)
T ss_pred HHHHHHHHHHHcCCCcH-HHHHHHHHHHHHcC---CCHHHHHHHcCCcc-CCCHHHHHHHHHHHHHHCHHHHHHHHCCHH
Confidence 57888999999999986 56666777665542 46889999999875 776 5999999999999988665432 12
Q ss_pred cchhhhHHHHHhh-CCCCChhhHHHHHHHH
Q 003764 150 TNVGDLFAHVRKR-LPWADPKIVKQLIDAR 178 (797)
Q Consensus 150 ~n~g~ll~~vr~~-LkWAd~k~vK~~vd~~ 178 (797)
..+|.+||+|-+. =-=|||+.+.+.|.+.
T Consensus 117 k~~~~l~G~vMk~~~G~ad~~~v~~~l~~~ 146 (147)
T smart00845 117 KALGFLVGQVMKATRGKADPKLVNELLKEK 146 (147)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 2378888888554 3448999999888654
No 128
>PLN02943 aminoacyl-tRNA ligase
Probab=91.44 E-value=0.33 Score=61.35 Aligned_cols=65 Identities=15% Similarity=0.082 Sum_probs=47.6
Q ss_pred ceeeeeec-cCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHH
Q 003764 496 YVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 574 (797)
Q Consensus 496 ~~~~f~~L-n~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir 574 (797)
.+|-|+.+ +.+|+|||||+|+. .+...+.++ |.|+++|.||+..+. ..+..++++.|++ ++
T Consensus 569 ~v~~hg~v~~~~G~KMSKS~GN~---------------i~p~~~i~~-ygaDalR~~l~~~~~-~~d~~fs~~~l~~-~~ 630 (958)
T PLN02943 569 YVYLHGLIRDSQGRKMSKTLGNV---------------IDPLDTIKE-FGTDALRFTLALGTA-GQDLNLSTERLTS-NK 630 (958)
T ss_pred eEEEeccEECCCCCcccCcCCCC---------------CCHHHHHHh-cCChHHHHHHHhCCC-CCCccccHHHHHH-HH
Confidence 46667765 68999999999983 455666665 999999999987665 4566788877765 34
Q ss_pred Hhhh
Q 003764 575 EELN 578 (797)
Q Consensus 575 ~~~~ 578 (797)
.+.+
T Consensus 631 ~~~~ 634 (958)
T PLN02943 631 AFTN 634 (958)
T ss_pred HHHH
Confidence 4443
No 129
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=91.22 E-value=0.52 Score=57.22 Aligned_cols=89 Identities=16% Similarity=0.091 Sum_probs=51.6
Q ss_pred HHHHHHhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Cc----hhchHHHHHHHHH
Q 003764 261 KEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NP----EAEKKEYIDHIEE 331 (797)
Q Consensus 261 ~~~~~~~~~~~~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDt-----Dp----~re~~e~~~~I~e 331 (797)
.+-|++-++. +..++.=..=.|||.|||||..-..++.....+.|..+++=|-|. |+ .+........+..
T Consensus 20 ~eeL~~ll~~-~~~~rv~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~ 98 (682)
T PTZ00348 20 ESELRNLIEK-KPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIE 98 (682)
T ss_pred HHHHHHHHhc-CCCCEEEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHH
Confidence 4444444432 222222223467899999994221344444456677777666664 22 1122223346777
Q ss_pred HHHHcCCCCCc--ccCCchhH
Q 003764 332 IVQWMGWEPFK--ITYTSDYF 350 (797)
Q Consensus 332 ~L~wLGl~pd~--~~~qSd~~ 350 (797)
++..+|++|++ +.+||+.+
T Consensus 99 ~~lA~GlDpeK~~~~~qSd~i 119 (682)
T PTZ00348 99 VWKAAGMDMDKVLFLWSSEEI 119 (682)
T ss_pred HHHHcCCCccceEEEECcHhh
Confidence 88999999984 78999843
No 130
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=90.79 E-value=0.35 Score=60.75 Aligned_cols=80 Identities=21% Similarity=0.258 Sum_probs=53.9
Q ss_pred CchhHHHHHHHHHHHHHH--cCCEEEEE---eecCC-ch------------------------------------hchHH
Q 003764 287 LHIGHAKAMFVDFGLAKE--RGGYCYLR---YDDTN-PE------------------------------------AEKKE 324 (797)
Q Consensus 287 LHIGharaal~n~~~Ar~--~~G~~iLR---idDtD-p~------------------------------------re~~e 324 (797)
|||||+++..+-+.+||. ..|.-+|+ +|.+- |. .....
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 799999999999999984 46666665 33222 11 11223
Q ss_pred HHHHHHHHHHHcCCC--CCcccCCchhHHHHHH----HHHHHHHcCcccc
Q 003764 325 YIDHIEEIVQWMGWE--PFKITYTSDYFQELYE----LAVELIRRGHAYV 368 (797)
Q Consensus 325 ~~~~I~e~L~wLGl~--pd~~~~qSd~~~~~ye----~a~~LI~~G~AY~ 368 (797)
|.+.+.++++.||+. |+..+.+.+ +.|++ ...+|.++|++|.
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~y~T~d--p~y~~~v~w~F~~L~ekGliyr 128 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRREFTTTD--PEYSKFIEWQFRKLKEKGLIVK 128 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCCeECCC--hhHHHHHHHHHHHHHHCCCEec
Confidence 457789999999985 666555554 23333 3458999999995
No 131
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=90.28 E-value=1 Score=44.38 Aligned_cols=84 Identities=20% Similarity=0.249 Sum_probs=54.9
Q ss_pred hhHHHHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccccchhh
Q 003764 75 RPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGD 154 (797)
Q Consensus 75 ~~~l~~~I~~g~iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~k~~~~~~ry~~n~g~ 154 (797)
+..+..|-..|+..--.+..+=+..|.+.- .-.+|+|||++.|.++|++..+. . ..++|+
T Consensus 58 ~ea~e~y~~agR~dlae~e~~Ei~iL~~yL---------------P~~lseeEi~~~v~~~i~e~ga~----~-~k~mG~ 117 (143)
T PF09424_consen 58 KEAAEQYEKAGRPDLAEKEQAEIEILEEYL---------------PKQLSEEEIEAIVEEAIAELGAS----S-MKDMGK 117 (143)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHGGGS--------------------HHHHHHHHHHHHHHTT------B-GGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhC---------------cCCCCHHHHHHHHHHHHHHhCCC----C-hHHHHH
Confidence 455556666666555555566666666552 24799999999999999996543 2 236999
Q ss_pred hHHHHHhhCC-CCChhhHHHHHHHH
Q 003764 155 LFAHVRKRLP-WADPKIVKQLIDAR 178 (797)
Q Consensus 155 ll~~vr~~Lk-WAd~k~vK~~vd~~ 178 (797)
+|+.|+..++ =||++.|...|-..
T Consensus 118 vMk~l~~~~~G~~Dgk~vs~~Vk~~ 142 (143)
T PF09424_consen 118 VMKALMAKLKGRADGKKVSQLVKEA 142 (143)
T ss_dssp HHHHHHHHHTTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCcccHHHHHHHHHhh
Confidence 9999998754 58999998888654
No 132
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=89.71 E-value=0.52 Score=59.76 Aligned_cols=65 Identities=14% Similarity=0.087 Sum_probs=46.8
Q ss_pred eeeee-ccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHh
Q 003764 498 WEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREE 576 (797)
Q Consensus 498 ~~f~~-Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~ 576 (797)
+.+|+ +..+|+|||||+|+. .+...+.++ |.+.|+|.|++..+....+..++++.+-+.++.+
T Consensus 580 ~~hG~Vld~~G~KMSKSlGNv---------------IdP~dli~~-yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~ 643 (975)
T PRK06039 580 LVHGHVLDEDGQKMSKSLGNY---------------VDPFEVFDK-YGADALRWYLLSSSAPWEDLRFSEDGVREVVRKF 643 (975)
T ss_pred EEeeeEECCCCCCcCCCCCCc---------------CCHHHHHHH-hChHHHHHHHHhCCCCCCCceechhHHHHHHHHH
Confidence 34565 456999999999983 355566655 8899999999988875566678887744444454
Q ss_pred hh
Q 003764 577 LN 578 (797)
Q Consensus 577 ~~ 578 (797)
++
T Consensus 644 l~ 645 (975)
T PRK06039 644 LL 645 (975)
T ss_pred HH
Confidence 43
No 133
>PLN02959 aminoacyl-tRNA ligase
Probab=89.45 E-value=1 Score=57.73 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=42.8
Q ss_pred eeeeeeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHH
Q 003764 497 VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 573 (797)
Q Consensus 497 ~~~f~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~i 573 (797)
+..+|++..+|+|||||+||. .++..+.+. |.+.++|.||+..+-...+..+....+.+++
T Consensus 706 v~v~G~V~~~G~KMSKSkGNv---------------I~p~diI~k-yGADalRl~la~~~~~~~D~nF~~k~~n~~~ 766 (1084)
T PLN02959 706 FRCNGHLMLNSEKMSKSTGNF---------------LTLRQAIEE-FSADATRFALADAGDGVDDANFVFETANAAI 766 (1084)
T ss_pred EEEccEEecCCcCccccCCCc---------------CCHHHHHHH-hCchHHHHHHhhcCCccCCCCccHHHHHHHH
Confidence 334577789999999999983 455566654 8999999999877554445566655444433
No 134
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=89.28 E-value=0.63 Score=58.22 Aligned_cols=63 Identities=11% Similarity=-0.000 Sum_probs=45.3
Q ss_pred eeeec-cCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhh
Q 003764 499 EYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 577 (797)
Q Consensus 499 ~f~~L-n~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~ 577 (797)
-++++ +.+|+|||||+|+. .+...+.+. |.++++|.|++.. -...+..++.+.+....+.+.
T Consensus 600 ~hG~vl~~~G~KMSKSkGNv---------------I~p~d~i~~-yGaDalR~~ll~~-~~~~D~~fs~~~l~~~~~~~~ 662 (861)
T TIGR00392 600 THGFTLDEKGRKMSKSLGNV---------------VDPLKVINK-YGADILRLYVASS-DPWEDLRFSDEILKQVVEKYR 662 (861)
T ss_pred ecceEECCCCCCcCCCCCCC---------------CCHHHHHHH-cCHHHHHHHHHhC-CCCCCceECHHHHHHHHHHHH
Confidence 35664 46999999999983 455566654 8899999999877 444556788888877655444
Q ss_pred h
Q 003764 578 N 578 (797)
Q Consensus 578 ~ 578 (797)
+
T Consensus 663 n 663 (861)
T TIGR00392 663 K 663 (861)
T ss_pred H
Confidence 3
No 135
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=88.72 E-value=1 Score=56.54 Aligned_cols=67 Identities=19% Similarity=0.142 Sum_probs=47.9
Q ss_pred ceeeeeec-cCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHH
Q 003764 496 YVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 574 (797)
Q Consensus 496 ~~~~f~~L-n~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir 574 (797)
..+-||++ +.+|+|||||+|+. .+...+.+. |.++|+|.|++..+....+..++++.+... +
T Consensus 506 ~v~~hG~v~d~~G~KMSKSlGNv---------------IdP~dvi~~-yGaDalR~~ll~~~~~~~Di~fs~~~l~~~-~ 568 (874)
T PRK05729 506 DVYIHGLVRDEQGRKMSKSKGNV---------------IDPLDLIDK-YGADALRFTLAALASPGRDIRFDEERVEGY-R 568 (874)
T ss_pred heEEeeeEECCCCCCcccCCCCC---------------CCHHHHHHH-hChHHHHHHHHhCCCCCCCceeCHHHHHHH-H
Confidence 55667775 47999999999983 344555554 889999999998766556677888877654 3
Q ss_pred Hhhhc
Q 003764 575 EELNK 579 (797)
Q Consensus 575 ~~~~~ 579 (797)
.+.+.
T Consensus 569 ~~~nk 573 (874)
T PRK05729 569 NFANK 573 (874)
T ss_pred HHHHH
Confidence 34433
No 136
>PHA01735 hypothetical protein
Probab=88.17 E-value=0.88 Score=39.24 Aligned_cols=55 Identities=22% Similarity=0.268 Sum_probs=45.4
Q ss_pred hHHHHHHhcCCCCCHHhHHHHHHHHHhcCCC--CCCHHHHHHHcCCCeeeCHHHHHHH
Q 003764 76 PTLLLYIVSSKIKTPAQLEAAFSFFASTGSE--NFEVDEFEEACGVGVEVSSEDIELT 131 (797)
Q Consensus 76 ~~l~~~I~~g~iks~~Ql~aA~kyl~~~~~~--~id~~~Fe~~cGVGv~vT~EqI~~~ 131 (797)
..+.+.|.+|.-+ ++.|.||++||++|.-. +.+-.-+.+-.|+=-.+|.|++++.
T Consensus 19 ~El~~RiksgeAT-taDL~AA~d~Lk~NdItgv~~~gspl~~La~~~P~l~~e~vq~~ 75 (76)
T PHA01735 19 NELLSRIKSGEAT-TADLRAACDWLKSNDITGVAVDGSPLAKLAGLMPQLTFEDVQER 75 (76)
T ss_pred HHHHHHHhcCccc-HHHHHHHHHHHHHCCCceeeCCCCHHHHHHhcCccCCHHHHHhc
Confidence 4578899999965 59999999999998632 5677889999998889999998764
No 137
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.10 E-value=8.7 Score=44.13 Aligned_cols=90 Identities=20% Similarity=0.273 Sum_probs=47.8
Q ss_pred CcHHHHHHhhhhcCCeEEEEeCCCCCC-cCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Cch-----h---chHH
Q 003764 259 NTKEVLDKHLEVTGGNVLTRFPPEPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----A---EKKE 324 (797)
Q Consensus 259 ~~~~~~~~~~~~~~g~v~tRFaPsPtG-~LHIGharaal~n~~~Ar~~~G~~iLRidDt-----Dp~-----r---e~~e 324 (797)
.+.+.+.+.++.. +++.=..=.||| .|||||+..+..=-.|- ..|=+-++=|-|- ||. | ..+.
T Consensus 19 ~~ee~l~~ll~~~--~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ-~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~ 95 (401)
T COG0162 19 TDEEELRKLLEEG--PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQ-DAGHKPIVLIGDATAMIGDPSGKSEERKLLTRET 95 (401)
T ss_pred CcHHHHHHHHhcC--CceEEEeeCCCCCccchhhHHHHHHHHHHH-HCCCeEEEEecccceecCCCCCCHHHHhhccHHH
Confidence 4577777777664 333333446889 89999999875421111 2232222222222 342 1 2233
Q ss_pred HHHHHHHHHHHcCCCCC---cccCCchhHH
Q 003764 325 YIDHIEEIVQWMGWEPF---KITYTSDYFQ 351 (797)
Q Consensus 325 ~~~~I~e~L~wLGl~pd---~~~~qSd~~~ 351 (797)
+.+.+....+.+|...+ ++.+.|+.+.
T Consensus 96 v~~n~~~i~~ql~~~ld~k~~~v~ns~w~~ 125 (401)
T COG0162 96 VLENAETIKKQLGKFLDNKAEFVNNSDWLK 125 (401)
T ss_pred HHHHHHHHHHHhcccCCcceEEEechHHhC
Confidence 44455555666776555 4566666544
No 138
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=86.77 E-value=3 Score=47.43 Aligned_cols=86 Identities=22% Similarity=0.281 Sum_probs=50.0
Q ss_pred HHHHHHhhhhcCCeEEEEeCCCCCC-cCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Cch-----h------chH
Q 003764 261 KEVLDKHLEVTGGNVLTRFPPEPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----A------EKK 323 (797)
Q Consensus 261 ~~~~~~~~~~~~g~v~tRFaPsPtG-~LHIGharaal~n~~~Ar~~~G~~iLRidDt-----Dp~-----r------e~~ 323 (797)
.+.+.++++. .-.+.+=| .||| .|||||+.++. +...-...|...++=|-|- ||. | +..
T Consensus 20 ~~~l~~ll~~-~~~vy~G~--dPTg~~lHlGh~v~l~-~l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~ 95 (377)
T TIGR00234 20 EEELLKLLER-KIKLYVGF--DPTAPSLHLGHLVPLL-KLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQ 95 (377)
T ss_pred HHHHHHHhcC-CCEEEEee--CCCCCCccHHHHHHHH-HHHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHH
Confidence 5678787765 33343433 6789 89999999754 3333344554544445554 331 1 223
Q ss_pred HHHHHHHHHHHHcCCCCC--cccCCchhHH
Q 003764 324 EYIDHIEEIVQWMGWEPF--KITYTSDYFQ 351 (797)
Q Consensus 324 e~~~~I~e~L~wLGl~pd--~~~~qSd~~~ 351 (797)
++.+.|.. .-..|++|+ ++.++|+.+.
T Consensus 96 ~n~~~i~~-~la~gld~~k~~iv~ns~w~~ 124 (377)
T TIGR00234 96 ENAENIKK-QIARFLDFEKAKFVNNSEWLL 124 (377)
T ss_pred HHHHHHHH-HHHHhCChhheEEEECchhcC
Confidence 44444433 445688875 4778888654
No 139
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=86.26 E-value=1.5 Score=56.01 Aligned_cols=65 Identities=17% Similarity=0.131 Sum_probs=44.7
Q ss_pred eeeeeecc-CCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHH
Q 003764 497 VWEYSRLN-VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 575 (797)
Q Consensus 497 ~~~f~~Ln-~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~ 575 (797)
.+-+|++. .+|+|||||+|+. .....+.++ |.++++|.||+..+....+..++++.++.. +.
T Consensus 525 V~~hG~v~d~~G~KMSKSkGNv---------------IdP~dvIe~-yGaDalR~~L~~~~~~g~D~~fs~~~l~~~-~~ 587 (1052)
T PRK14900 525 VYLHPMVRDEKGQKMSKTKGNV---------------IDPLVITEQ-YGADALRFTLAALTAQGRDIKLAKERIEGY-RA 587 (1052)
T ss_pred eEecccEECCCCCCccCCCCCC---------------CCHHHHHHH-hCcHHHHHHHHhcCCCCCCCcccHHHHHHH-HH
Confidence 44466665 4999999999983 233444444 889999999998765556667887777543 34
Q ss_pred hhh
Q 003764 576 ELN 578 (797)
Q Consensus 576 ~~~ 578 (797)
|.+
T Consensus 588 f~n 590 (1052)
T PRK14900 588 FAN 590 (1052)
T ss_pred HHH
Confidence 443
No 140
>PLN02843 isoleucyl-tRNA synthetase
Probab=85.11 E-value=2.3 Score=54.09 Aligned_cols=60 Identities=18% Similarity=0.106 Sum_probs=42.4
Q ss_pred Cceeeeee-ccCCCceecccccccccccCccCCCCCcchhhHHHHHHc--------CCChHHHHHHHHHhCCCCCCcccc
Q 003764 495 PYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR--------GVTSTSINAFVQGIGISRSDSLIR 565 (797)
Q Consensus 495 P~~~~f~~-Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrr--------G~~PeAI~~fl~~lG~s~~~~~~~ 565 (797)
-.+|.||. ++.+|+|||||+||. .+...+... -|.++++|.|+++..++. +..++
T Consensus 596 k~v~~HG~vld~~G~KMSKSlGNv---------------I~p~~vi~~~~~~~~~~~yGaD~lR~~l~~~~~~~-d~~~s 659 (974)
T PLN02843 596 KSVLTHGFVLDEKGFKMSKSLGNV---------------VDPRLVIEGGKNQKQEPAYGADVLRLWVASVDYTG-DVLIG 659 (974)
T ss_pred ceEEEeccEECCCCCCcCCCCCCc---------------CCHHHHHhhccccccccccChHHHHHHHHhcccCC-CceeC
Confidence 45566776 567999999999983 345555552 288999999998766543 55666
Q ss_pred HhhHH
Q 003764 566 LDRLE 570 (797)
Q Consensus 566 ~~~Le 570 (797)
.+.|.
T Consensus 660 ~~~l~ 664 (974)
T PLN02843 660 PQILK 664 (974)
T ss_pred HHHHH
Confidence 66665
No 141
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=84.43 E-value=2 Score=53.84 Aligned_cols=95 Identities=24% Similarity=0.250 Sum_probs=64.6
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHc--CCEEEEEe-------------------------ecCCch----h---
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKER--GGYCYLRY-------------------------DDTNPE----A--- 320 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~~--~G~~iLRi-------------------------dDtDp~----r--- 320 (797)
|.-==||..||.+|||||.+=++-+.+.|.+ .|..+-|. +..-.+ .
T Consensus 52 vfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~ 131 (933)
T COG0060 52 VLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCRE 131 (933)
T ss_pred EEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHH
Confidence 3334499999999999999999988887742 33322222 111111 1
Q ss_pred chHHHHHHHHHHHHHcCCC--CCccc--CCchhHHHHHHHHHHHHHcCccccC
Q 003764 321 EKKEYIDHIEEIVQWMGWE--PFKIT--YTSDYFQELYELAVELIRRGHAYVD 369 (797)
Q Consensus 321 e~~e~~~~I~e~L~wLGl~--pd~~~--~qSd~~~~~ye~a~~LI~~G~AY~C 369 (797)
...++++...+++..||+- |+.+| ..-+|.+.......+|.++|+.|..
T Consensus 132 ~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg 184 (933)
T COG0060 132 FALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRG 184 (933)
T ss_pred HHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecC
Confidence 1346778888899999984 55554 4555666666777899999999953
No 142
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=82.87 E-value=3.3 Score=51.55 Aligned_cols=66 Identities=20% Similarity=0.196 Sum_probs=46.3
Q ss_pred HhCCCCCceeeeee---ccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCcccc
Q 003764 489 ALGLYQPYVWEYSR---LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 565 (797)
Q Consensus 489 aLg~~~P~~~~f~~---Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~ 565 (797)
+|.-..|...-|-| ++.+|+|||||+||.. || ..+.++ |-.+|+|.+++.++....+..++
T Consensus 502 ~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvI----------DP-----~d~I~~-yGaDAlRf~la~~~~~G~Di~~~ 565 (877)
T COG0525 502 HLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVI----------DP-----LDVIDK-YGADALRFTLASLASPGRDINFD 565 (877)
T ss_pred HhcCCCCccEEEEeeeEEcCCCCCCcccCCCcC----------CH-----HHHHHH-hChHHHHHHHHhccCCCcccCcC
Confidence 44445676555543 5889999999999842 33 334443 77889999988876666666788
Q ss_pred HhhHH
Q 003764 566 LDRLE 570 (797)
Q Consensus 566 ~~~Le 570 (797)
+..++
T Consensus 566 ~~~~~ 570 (877)
T COG0525 566 EKRVE 570 (877)
T ss_pred HHHHH
Confidence 77777
No 143
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=82.18 E-value=2.8 Score=52.93 Aligned_cols=56 Identities=14% Similarity=0.066 Sum_probs=38.9
Q ss_pred eeee-ccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHH
Q 003764 499 EYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 571 (797)
Q Consensus 499 ~f~~-Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~ 571 (797)
.||+ ++.+|+|||||+||. .+...+.++ |.++++|.|++. +-...+..++.+.|.+
T Consensus 581 ~HG~vld~~G~KMSKSlGNv---------------IdP~~ii~~-yGaDalR~~ll~-~~~~~D~~~s~~~l~~ 637 (912)
T PRK05743 581 THGFTVDGKGRKMSKSLGNV---------------IDPQDVIKK-YGADILRLWVAS-TDYSGDVRISDEILKQ 637 (912)
T ss_pred EeeeEECCCCCCCCCCCCCc---------------CCHHHHHHh-cChHHHHHHHHh-cCCCCCeeecHHHHHH
Confidence 3565 456999999999983 334455543 889999999987 4334455677666654
No 144
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=81.43 E-value=3.2 Score=52.78 Aligned_cols=59 Identities=15% Similarity=0.093 Sum_probs=40.8
Q ss_pred ceeeeeec-cCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHH
Q 003764 496 YVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 571 (797)
Q Consensus 496 ~~~~f~~L-n~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~ 571 (797)
..+-||++ +.+|+|||||+||. .....+.. .|.++++|.|++...+ ..+..++.+.|.+
T Consensus 616 ~V~~HG~vld~~G~KMSKSlGNv---------------IdP~~ii~-~yGaD~lRl~lls~~~-~~D~~fs~~~l~~ 675 (961)
T PRK13804 616 AVLTHGFTLDEKGEKMSKSLGNT---------------VSPQDVIK-QSGADILRLWVASVDY-SDDQRIGKEILKQ 675 (961)
T ss_pred hEEEeccEECCCCCCccCCCCCc---------------CCHHHHHH-hcCHHHHHHHHHhCCC-CCCcccCHHHHHH
Confidence 55667765 56999999999983 23344444 4899999999987544 3455677666544
No 145
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=80.98 E-value=3.5 Score=49.69 Aligned_cols=75 Identities=15% Similarity=0.054 Sum_probs=43.7
Q ss_pred CccEEecCcccccchhHHHHHH-HHhCCCCC--ceeeeee-ccCCCceecccccccccccCccCCCCCcchhhHHHHHHc
Q 003764 466 NITHSLCTLEFETRRASYFWLL-HALGLYQP--YVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR 541 (797)
Q Consensus 466 gITHvlRG~E~~~~t~~q~~L~-~aLg~~~P--~~~~f~~-Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrr 541 (797)
-++-.+-|.|++..-.....+. -++--..| ....+|. ++.+|+|||||+|+ ..+...+.++
T Consensus 514 P~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN---------------vi~p~~ii~~ 578 (601)
T PF00133_consen 514 PVDLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGN---------------VIDPEDIIEK 578 (601)
T ss_dssp SBSEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB-----------------BHHHHHHH
T ss_pred CcccccCCccchhhHHHHhHhhccccccCCchheeeecccccccceeecccCCCc---------------ccCHHHHHHH
Confidence 4556666776664433322222 23332233 3334565 57899999999998 3566777776
Q ss_pred CCChHHHHHHHHHhC
Q 003764 542 GVTSTSINAFVQGIG 556 (797)
Q Consensus 542 G~~PeAI~~fl~~lG 556 (797)
|.++++|-|++..+
T Consensus 579 -yGaD~lRl~~~~~~ 592 (601)
T PF00133_consen 579 -YGADALRLWLASSA 592 (601)
T ss_dssp -T-HHHHHHHHHHHS
T ss_pred -hCcHHHHHHHHhcC
Confidence 89999999988654
No 146
>PLN02882 aminoacyl-tRNA ligase
Probab=80.14 E-value=2.9 Score=54.10 Aligned_cols=68 Identities=10% Similarity=0.050 Sum_probs=41.2
Q ss_pred CCCCCcee-eeeec-cCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCC-CCccccHh
Q 003764 491 GLYQPYVW-EYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR-SDSLIRLD 567 (797)
Q Consensus 491 g~~~P~~~-~f~~L-n~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~-~~~~~~~~ 567 (797)
|...|..+ .+|++ ..+|+|||||+||.. || ..+..+ |.++|+|.|++...... .+..++.+
T Consensus 594 ~~~pfk~VivhG~vlde~G~KMSKSlGNvI----------dP-----~evi~~-YGADaLR~~Ll~s~~~~~~d~~fs~~ 657 (1159)
T PLN02882 594 DKPAFKNLICNGLVLAEDGKKMSKSLKNYP----------DP-----NEVIDK-YGADALRLYLINSPVVRAEPLRFKEE 657 (1159)
T ss_pred CCCCcceeEEccEEECCCCCCcccCCCCCC----------CH-----HHHHHH-hCcHHHHHHHHhCCcccCcCcccCHH
Confidence 44444333 35665 458999999999841 23 344443 88999999998765432 22345555
Q ss_pred hHHHHHH
Q 003764 568 RLEYHIR 574 (797)
Q Consensus 568 ~Le~~ir 574 (797)
.+.+.++
T Consensus 658 ~v~~~~~ 664 (1159)
T PLN02882 658 GVFGVVK 664 (1159)
T ss_pred HHHHHHH
Confidence 5554433
No 147
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=78.28 E-value=4.1 Score=44.47 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=47.5
Q ss_pred CCCCCcCchhHHHHHHHHHHHHH---HcCCEEEEEeecCC------chhchHHHHHHHHHHHHHcCCCCCc--ccCCchh
Q 003764 281 PEPNGYLHIGHAKAMFVDFGLAK---ERGGYCYLRYDDTN------PEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDY 349 (797)
Q Consensus 281 PsPtG~LHIGharaal~n~~~Ar---~~~G~~iLRidDtD------p~re~~e~~~~I~e~L~wLGl~pd~--~~~qSd~ 349 (797)
--|||.+||||-..|+-+|.--. ..+-.+++-|-|.. +++.-..+.-.+...|-+.|++|.+ ..+||+-
T Consensus 20 IQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~lF~QS~V 99 (347)
T KOG2713|consen 20 IQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSSLFVQSDV 99 (347)
T ss_pred cCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccceeeeeccc
Confidence 36999999999999999996543 23345777787774 1223334444445556677999986 6688874
No 148
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=77.77 E-value=5.2 Score=51.96 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=41.5
Q ss_pred eee-ccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCC-CCCccccHhhHHHHHHHhh
Q 003764 500 YSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGIS-RSDSLIRLDRLEYHIREEL 577 (797)
Q Consensus 500 f~~-Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s-~~~~~~~~~~Le~~ir~~~ 577 (797)
+|+ |+.+|+|||||+||.. ||. .+.. .|-++|+|.|+++.+.. ..+..++...+.+..+.++
T Consensus 710 HG~Vld~dG~KMSKSlGNvI----------DP~-----evI~-kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~l 773 (1205)
T PTZ00427 710 NGLVLASDGKKMSKRLKNYP----------DPL-----YILD-KYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKSFI 773 (1205)
T ss_pred ccEEEcCCCCCcccCCCCCC----------CHH-----HHHH-hcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHHHH
Confidence 455 4679999999999841 332 2333 37789999999876442 3444677777766666654
No 149
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=74.56 E-value=7.1 Score=48.79 Aligned_cols=48 Identities=19% Similarity=0.075 Sum_probs=35.8
Q ss_pred eecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHH
Q 003764 509 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (797)
Q Consensus 509 kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 572 (797)
|||||+|| ..+...+.++ |.++++|-|++..|-...+..++.+.++++
T Consensus 570 KMSKS~GN---------------~i~p~~~i~~-ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~ 617 (805)
T PRK00390 570 KMSKSKGN---------------VVDPDDIIEK-YGADTARLFEMFAGPPEKDLEWSDSGVEGA 617 (805)
T ss_pred EeCCCCCC---------------CCCHHHHHHH-cChHHHHHHHHhcCCccCCcccCHHHHHHH
Confidence 99999998 3466677765 999999999988764445556666666654
No 150
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=72.20 E-value=3 Score=51.76 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=61.4
Q ss_pred ccEEEEEecCCCCCCCCcc--cccccccccc--h----hhhccCCccEEecCcccccchhHHHHHHH-Hh---C-CC--C
Q 003764 430 DLIAYRIKFTPHPHAGDKW--CIYPSYDYAH--C----IVDSIENITHSLCTLEFETRRASYFWLLH-AL---G-LY--Q 494 (797)
Q Consensus 430 D~V~~r~~~~~h~~~gd~~--~~~PtY~fA~--~----VDD~~~gITHvlRG~E~~~~t~~q~~L~~-aL---g-~~--~ 494 (797)
|--+||-.++-.+..++.| .-|-.|+|.. . --++.+-|..-|=|.||..+--.|.-+.. +| | |+ .
T Consensus 482 ~s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~e 561 (814)
T COG0495 482 DSTAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDE 561 (814)
T ss_pred CCceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCcc
Confidence 3445555444333344555 3566666661 1 11234444455555555544333332222 22 2 22 2
Q ss_pred Ccee--eeeeccC-CCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCC
Q 003764 495 PYVW--EYSRLNV-SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 560 (797)
Q Consensus 495 P~~~--~f~~Ln~-~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~ 560 (797)
|..- .-|++-. +|+|||||++|. .++..+... |-+.++|-|++..|-...
T Consensus 562 pf~~L~~qGmVl~~~g~KMSKSKgN~---------------v~p~~~i~~-yGADt~Rl~~m~~ap~~~ 614 (814)
T COG0495 562 PFKKLITQGMVLGEEGEKMSKSKGNV---------------VDPEEAVEK-YGADTVRLYIMFAAPPEQ 614 (814)
T ss_pred chhhhhccceEEecCCCccccccCCC---------------CCHHHHHHH-hCchHHHHHHHhhCChhh
Confidence 3211 1234334 799999999983 466666665 788899999988874433
No 151
>KOG2438 consensus Glutamyl-tRNA amidotransferase subunit B [Translation, ribosomal structure and biogenesis]
Probab=68.74 E-value=1.4e+02 Score=34.76 Aligned_cols=162 Identities=14% Similarity=0.108 Sum_probs=94.6
Q ss_pred HHHhcCCCchhHHHHhhCHHHHHHHHHH--HHHcccCCCCchhHHHHHHHH-HhhCCC-------CC--cCchhHHHHHH
Q 003764 15 LFLKIGLDDRTAKNTIANNKVTANLTAV--IHEAAVTDGCERRIGNLLYTV-ATKYPT-------NA--LVHRPTLLLYI 82 (797)
Q Consensus 15 ~f~~iGL~e~kaket~KN~kls~~L~~i--i~~a~~~~~~dk~~g~ll~~l-at~~~~-------~~--~~~~~~l~~~I 82 (797)
|-...||+-+.|.-++-++.+..-++.. |.+...+. .++..-+-+.+. ...++. .. ......|+..+
T Consensus 327 L~e~~gl~~k~a~~L~~~~~~~~~~~d~v~i~k~~ae~-~~k~~~~Wi~~~~~g~lrq~~ls~~~~~~~p~~la~ll~ll 405 (505)
T KOG2438|consen 327 LVEQYGLSAKDAVTLANEVELLEFYKDSVRIIKYKAET-TPKLITYWIKEEFLGYLRQIALSPNQSIVTPRQLADLLKLL 405 (505)
T ss_pred HHHhhccchhhhhhhhcchhHHHHHhhhhhhhhhcccc-cccchHHHHHHHHHHHHhhccCCccccccChHHHHHHHHHh
Confidence 4667899999999999998877766422 23322211 223222222111 111110 00 12356677777
Q ss_pred hcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHh--hccccchhhhHHHHH
Q 003764 83 VSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILE--LRYRTNVGDLFAHVR 160 (797)
Q Consensus 83 ~~g~iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~k~~~~~--~ry~~n~g~ll~~vr 160 (797)
-++.|....-.+ -+.-+.+++ +..+...+-++--.+-.=.|++|++.|.+++++|-..+.+ .|-...++.++|.+.
T Consensus 406 ~~~~Is~~~ak~-ll~~l~~~~-~~~~~s~LIeek~l~~I~dp~eIe~lv~~vm~~h~k~ve~~rsGk~k~~~~l~G~vm 483 (505)
T KOG2438|consen 406 SEETISALSAKQ-LLRHLLKNP-GVMTVSILIEEKRLWQIRDPAEIEELVRSVMEKHPKQVEQLRSGKTKSIKRLIGLVM 483 (505)
T ss_pred hhhhhhHHHHHH-HHHHHHhCC-CcCCHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 777776532222 222233343 2224444444433333349999999999999998876654 333345777888876
Q ss_pred hh-CCCCChhhHHHHHHHHH
Q 003764 161 KR-LPWADPKIVKQLIDARM 179 (797)
Q Consensus 161 ~~-LkWAd~k~vK~~vd~~~ 179 (797)
+. -.-|+++++..++.+.+
T Consensus 484 k~s~g~a~p~~le~~l~~~L 503 (505)
T KOG2438|consen 484 KSSQGRANPKDLEKILEELL 503 (505)
T ss_pred HHhhcCCCHHHHHHHHHHHh
Confidence 54 88999999998887653
No 152
>PLN02381 valyl-tRNA synthetase
Probab=67.46 E-value=14 Score=47.52 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=32.5
Q ss_pred CCCcCch--hHHHHHHHHHHHHHHcCCEEEEEeecCC------c----hhchHHHHHHHHHHHHHcCCC
Q 003764 283 PNGYLHI--GHAKAMFVDFGLAKERGGYCYLRYDDTN------P----EAEKKEYIDHIEEIVQWMGWE 339 (797)
Q Consensus 283 PtG~LHI--Gharaal~n~~~Ar~~~G~~iLRidDtD------p----~re~~e~~~~I~e~L~wLGl~ 339 (797)
=||..|+ ||.- -.|.+++.||=.++-=||+-- . .....++-+.|.++|+-.|+-
T Consensus 378 GTG~V~i~PaHd~---~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l 443 (1066)
T PLN02381 378 GTGAVKITPAHDP---NDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLY 443 (1066)
T ss_pred CCCcEEecCCCCh---HHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCE
Confidence 5677777 3433 257777877754444343311 0 123456778889999988874
No 153
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=67.37 E-value=9.2 Score=48.04 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=35.3
Q ss_pred eecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHH
Q 003764 509 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (797)
Q Consensus 509 kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 572 (797)
|||||+|| ..++..+.++ |.+.|+|-|++..+....+..++.+.++.+
T Consensus 604 KMSKS~GN---------------~v~p~~ii~~-ygaDalRl~~l~~~~~~~d~~~~~~~l~~~ 651 (842)
T TIGR00396 604 KMSKSKGN---------------GIDPQEIVKK-HGADALRLYIMFMGPIAASLEWNDSGLEGA 651 (842)
T ss_pred hhhhcCCC---------------cCCHHHHHHH-cCchHHHHHHHhcCCcCCCCccCHHHHHHH
Confidence 99999998 3567777775 899999999987654445555666666543
No 154
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=66.22 E-value=9.6 Score=48.77 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=33.4
Q ss_pred CCCcCch--hHHHHHHHHHHHHHHcCCEEEEEeecCC-----c----hhchHHHHHHHHHHHHHcCCC
Q 003764 283 PNGYLHI--GHAKAMFVDFGLAKERGGYCYLRYDDTN-----P----EAEKKEYIDHIEEIVQWMGWE 339 (797)
Q Consensus 283 PtG~LHI--Gharaal~n~~~Ar~~~G~~iLRidDtD-----p----~re~~e~~~~I~e~L~wLGl~ 339 (797)
-||..|+ ||.- -.|.+++.||=..+-=||+-- . .....++-+.|.++|+..|+-
T Consensus 312 GTG~V~~~Pahd~---~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l 376 (995)
T PTZ00419 312 GTGAVKITPAHDP---NDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLL 376 (995)
T ss_pred CCCCeEeCCCCCh---HHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCE
Confidence 3788877 4433 367778887744443333211 1 124567788899999998874
No 155
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=64.43 E-value=0.74 Score=51.01 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=30.1
Q ss_pred CCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCC
Q 003764 525 DGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 560 (797)
Q Consensus 525 ~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~ 560 (797)
.+|++|+..++..|+++|++|++++.|+...|++..
T Consensus 259 r~~g~~~~~~l~~L~~lG~~~~~~~e~~~~~~~~~~ 294 (314)
T PF00749_consen 259 REWGDPPEATLNYLARLGWSPEAIREFFSLDELIKQ 294 (314)
T ss_dssp HHTT-THHHHHHHHHHTTB-HCTHHCHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhcCCcchhhhhcCHHHHHHH
Confidence 479999999999999999999999999988877544
No 156
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=61.25 E-value=14 Score=45.05 Aligned_cols=70 Identities=26% Similarity=0.389 Sum_probs=43.6
Q ss_pred hhcCCeEEEEeC-CCCCCcCchhHHHHHH---HHHHHHHHcCCEEEE---EeecCCchhchHHHHHHHHHHHHHcCCCCC
Q 003764 269 EVTGGNVLTRFP-PEPNGYLHIGHAKAMF---VDFGLAKERGGYCYL---RYDDTNPEAEKKEYIDHIEEIVQWMGWEPF 341 (797)
Q Consensus 269 ~~~~g~v~tRFa-PsPtG~LHIGharaal---~n~~~Ar~~~G~~iL---RidDtDp~re~~e~~~~I~e~L~wLGl~pd 341 (797)
...+.++.+-|| |--||.||+||+.++- |.-.|-|- +|+.+| -|-.|--+ .....+...+.++.+|..||
T Consensus 40 ~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL-~Gk~vLfPfgFHCTGMP--I~A~AdKLkrEie~fG~ppd 116 (1080)
T KOG0437|consen 40 QKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERL-QGKNVLFPFGFHCTGMP--IKASADKLKREIELFGCPPD 116 (1080)
T ss_pred ccccCceeEeccccccCceeeccceeehhhhHHHHHHHHh-cCceEEeecccccCCCc--cHHhHHHHHHHHHHhCCCCC
Confidence 334556667774 7889999999999863 22233343 444333 44455422 22445667778888998876
No 157
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=59.13 E-value=19 Score=43.96 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=63.3
Q ss_pred HHHHHHhhhhcCC-eEEEEeCCCCCCcCchhHHHHHHHHHHH-----HHHcCCEEEEEeecCC-c-----------h---
Q 003764 261 KEVLDKHLEVTGG-NVLTRFPPEPNGYLHIGHAKAMFVDFGL-----AKERGGYCYLRYDDTN-P-----------E--- 319 (797)
Q Consensus 261 ~~~~~~~~~~~~g-~v~tRFaPsPtG~LHIGharaal~n~~~-----Ar~~~G~~iLRidDtD-p-----------~--- 319 (797)
++.+.+.+...++ .++.- +-+|-||+|||+.-++-+.. |.+....|++-.|--- | +
T Consensus 46 ~~~~~~qls~~q~~~f~L~---danG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~ 122 (937)
T KOG0433|consen 46 PEILSSQLSDQQRVEFELK---DANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEG 122 (937)
T ss_pred hHHHHHHHhhccCceEEEe---ccCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccc
Confidence 5666666666543 33333 38999999999998775443 3333333443333221 0 0
Q ss_pred -------h-----chHHHHHHHHHHHHHcCCC--CCc--ccCCchhHHHHHHHHHHHHHcCccccCC
Q 003764 320 -------A-----EKKEYIDHIEEIVQWMGWE--PFK--ITYTSDYFQELYELAVELIRRGHAYVDH 370 (797)
Q Consensus 320 -------r-----e~~e~~~~I~e~L~wLGl~--pd~--~~~qSd~~~~~ye~a~~LI~~G~AY~C~ 370 (797)
| ...+++..-.+.++..|+- |.. ++.+.+|-..-.+..-+|.++|+.|+.+
T Consensus 123 ~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~ 189 (937)
T KOG0433|consen 123 SRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSF 189 (937)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccC
Confidence 0 1234555566777888986 434 4456666444445566899999998754
No 158
>PLN02563 aminoacyl-tRNA ligase
Probab=52.56 E-value=17 Score=46.29 Aligned_cols=56 Identities=16% Similarity=0.090 Sum_probs=35.5
Q ss_pred CCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhhh
Q 003764 506 SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELN 578 (797)
Q Consensus 506 ~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~ 578 (797)
.+.|||||+||. .....+.+. |-++++|.|++..+....+...+.+.++.+ +.|+.
T Consensus 720 ~~eKMSKSKGNv---------------VdP~eiI~k-YGADaLRl~ll~~ap~~dd~~w~~~~V~g~-~rfL~ 775 (963)
T PLN02563 720 RAHKMSKSRGNV---------------VNPDDVVSE-YGADSLRLYEMFMGPLRDSKTWSTSGVEGV-HRFLG 775 (963)
T ss_pred cccccccccCCc---------------CCHHHHHHH-cCcHHHHHHHHhCCCcccccccCHHHHHHH-HHHHH
Confidence 345999999983 233445544 889999999998775544444454445443 33443
No 159
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.59 E-value=24 Score=38.78 Aligned_cols=101 Identities=22% Similarity=0.262 Sum_probs=59.5
Q ss_pred cccCCCccceecCcHHHHHHhhhhcCCe---EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCch----
Q 003764 247 IPFSDGSVLICCNTKEVLDKHLEVTGGN---VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPE---- 319 (797)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~---v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~---- 319 (797)
++|+-++. ..+|... +.+.+ +.+|= | -++.||+||+..+++.-++-..++..+++.++|-..-
T Consensus 66 ~fFshRDf------~~iLd~~--eq~kpFyLYTGRG-p-SS~smHlGHliPFiftKwlQe~F~vpLVIqlTDDEKflwK~ 135 (397)
T KOG2145|consen 66 IFFSHRDF------NLILDAY--EQGKPFYLYTGRG-P-SSESMHLGHLIPFIFTKWLQDVFDVPLVIQLTDDEKFLWKD 135 (397)
T ss_pred ceeecccH------HHHHHHH--HcCCceEEEeCCC-C-CccccccccchhHHHHHHHHHHhCCceEEEecccHHHHHhh
Confidence 56666665 4454332 22222 44553 3 2588999999999998888888999988877663211
Q ss_pred ---hchHHHHHHHHHHHHHcCCCCCcc--cCCchhH--HHHHHHH
Q 003764 320 ---AEKKEYIDHIEEIVQWMGWEPFKI--TYTSDYF--QELYELA 357 (797)
Q Consensus 320 ---re~~e~~~~I~e~L~wLGl~pd~~--~~qSd~~--~~~ye~a 357 (797)
.....|...=..|+=.+|++|... ....+|+ ..+|+-+
T Consensus 136 l~~eda~~~arENaKDIia~GFDp~kTfIFsn~~y~g~~~fy~ni 180 (397)
T KOG2145|consen 136 LTLEDAKKYARENAKDIIAVGFDPKKTFIFSNLDYMGGPAFYENI 180 (397)
T ss_pred CcHHHHHHHHHhcccceEEeccCCcceEEEechhhccCcHHHHHH
Confidence 012233333344556789988763 3334444 2344443
No 160
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.40 E-value=16 Score=46.08 Aligned_cols=55 Identities=15% Similarity=0.055 Sum_probs=33.0
Q ss_pred ccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHH
Q 003764 503 LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 574 (797)
Q Consensus 503 Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir 574 (797)
|+.+|.|||||.||.. .-..+..+ |-++++|.|+++.-++ .+..++...++...+
T Consensus 596 lDe~GrKMSKSlGN~v---------------~P~~V~~~-yGADiLRLwv~ssd~~-~dl~~s~~il~~~~~ 650 (933)
T COG0060 596 LDEKGRKMSKSLGNVV---------------DPQDVIDK-YGADILRLWVASSDYW-EDLRFSDEILKQVRE 650 (933)
T ss_pred ECCCCCCccccCCCcC---------------CHHHHHHh-hCchheeeeeeecCch-hccccCHHHHHHHHH
Confidence 7889999999999842 22333333 5566777777655422 233455554444433
No 161
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.57 E-value=8.9 Score=46.74 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=42.6
Q ss_pred ccEEecCcccccchhHHHHHHHHhCCCCCcee----e-eeeccCCCceecccccccccccCccCCCCCcchhhHHHHHHc
Q 003764 467 ITHSLCTLEFETRRASYFWLLHALGLYQPYVW----E-YSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR 541 (797)
Q Consensus 467 ITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~----~-f~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrr 541 (797)
|...+-|.|++.|--.+ .||+...+-.-..| . =|||-+++.||||+.|+ +.||..-.+.
T Consensus 664 iDlrvsGKDLi~NHLtf-flynHvAl~~~k~WPkgiraNGHLmLNsEKMSKSTGN---------------fmTL~qaieK 727 (1080)
T KOG0437|consen 664 IDLRVSGKDLIPNHLTF-FLYNHVALFPEKKWPKGIRANGHLMLNSEKMSKSTGN---------------FMTLEQAIEK 727 (1080)
T ss_pred eeeeeccccccccceeE-eeeehhhhcccccCccceeeCceEEecchhhccccCC---------------eeeHHHHHHH
Confidence 45566677776654332 12332222112222 2 26888999999999998 5677654443
Q ss_pred CCChHHHHHHHHHhCCCC
Q 003764 542 GVTSTSINAFVQGIGISR 559 (797)
Q Consensus 542 G~~PeAI~~fl~~lG~s~ 559 (797)
|...+.|--++..|=+-
T Consensus 728 -Fgad~tRlalAdaGD~v 744 (1080)
T KOG0437|consen 728 -FGADGTRLALADAGDGV 744 (1080)
T ss_pred -hCccceeeeeecccCCc
Confidence 44555554445555433
No 162
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=32.74 E-value=1.4e+02 Score=31.61 Aligned_cols=28 Identities=36% Similarity=0.429 Sum_probs=23.5
Q ss_pred CCCCChhHHHHHHHhcCCCchhHHHHhh
Q 003764 4 VSKGDKSEILELFLKIGLDDRTAKNTIA 31 (797)
Q Consensus 4 ~~~~~~~~~~~~f~~iGL~e~kaket~K 31 (797)
++.++.+++.++.+++||-..||+.+.+
T Consensus 64 l~~a~~~~l~~~I~~iGlyr~KAk~I~~ 91 (211)
T COG0177 64 LLNADEEELEELIKSIGLYRNKAKNIKE 91 (211)
T ss_pred HHcCCHHHHHHHHHhcCCcHHHHHHHHH
Confidence 3567788899999999999999998753
No 163
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.20 E-value=6.8e+02 Score=31.30 Aligned_cols=107 Identities=21% Similarity=0.322 Sum_probs=60.9
Q ss_pred HHHhhhhcCCeEEEEe---CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEE-ee-cC---------Cch--------
Q 003764 264 LDKHLEVTGGNVLTRF---PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLR-YD-DT---------NPE-------- 319 (797)
Q Consensus 264 ~~~~~~~~~g~v~tRF---aPsPtG~LHIGharaal~n~~~Ar--~~~G~~iLR-id-Dt---------Dp~-------- 319 (797)
.+..++.+.++----| ||-.||-.|-||+.|..+-....| ...|.++=| |- || |.+
T Consensus 27 F~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~d 106 (1070)
T KOG0434|consen 27 FHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITGRDD 106 (1070)
T ss_pred HHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeecccccCCCccceeechhcCCCCHHH
Confidence 4455666666533333 899999999999999999887766 234544432 21 22 110
Q ss_pred -------------h-chHHHHHHHHHHHHHcCC----CCCcccCCchhHHHHHHHHHHHHHcCccccCC
Q 003764 320 -------------A-EKKEYIDHIEEIVQWMGW----EPFKITYTSDYFQELYELAVELIRRGHAYVDH 370 (797)
Q Consensus 320 -------------r-e~~e~~~~I~e~L~wLGl----~pd~~~~qSd~~~~~ye~a~~LI~~G~AY~C~ 370 (797)
| .+-.|.......+..||- +-|--+.--..++-..=...+|-++|+.|.-+
T Consensus 107 V~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~~kglVYRG~ 175 (1070)
T KOG0434|consen 107 VMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELHEKGLVYRGF 175 (1070)
T ss_pred HHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHHhcCceecce
Confidence 0 123455555555666663 22211111223333344567999999999643
No 164
>COG1610 Uncharacterized conserved protein [Function unknown]
Probab=29.62 E-value=5.1e+02 Score=26.03 Aligned_cols=85 Identities=14% Similarity=0.218 Sum_probs=59.1
Q ss_pred chhHHHHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccccchh
Q 003764 74 HRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVG 153 (797)
Q Consensus 74 ~~~~l~~~I~~g~iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~k~~~~~~ry~~n~g 153 (797)
++.-+-.|-..|+-.=-++..+=+.-+...-+. ..|+++|..+|.+.|++--+.- -+ .+|
T Consensus 61 RrdS~~~y~~agR~dLa~kE~~Ei~Ii~~ylP~---------------qLsd~e~~~~v~~aIae~Gas~----~~-dMG 120 (148)
T COG1610 61 RRDSAEEYEKAGRQDLAAKERAEIAIIEEYLPQ---------------QLSEDELRALVDAAIAEVGASS----MK-DMG 120 (148)
T ss_pred HHHHHHHHHHcCcHHHHHHHHhHHHHHHHhCcc---------------cCCHHHHHHHHHHHHHHHHHhh----HH-HHH
Confidence 466677777777766555666666656554312 2899999999999998854433 22 499
Q ss_pred hhHHHHHhh-CCCCChhhHHHHHHHH
Q 003764 154 DLFAHVRKR-LPWADPKIVKQLIDAR 178 (797)
Q Consensus 154 ~ll~~vr~~-LkWAd~k~vK~~vd~~ 178 (797)
++|+.++.. --=||+..+-..|-..
T Consensus 121 kvM~al~~k~~GkaD~~~vs~~VK~~ 146 (148)
T COG1610 121 KVMKALKPKVAGKADGGRVSKLVKEL 146 (148)
T ss_pred HHHHHHhHHhcccCcHHHHHHHHHHH
Confidence 999999976 5678888777766543
No 165
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=28.69 E-value=88 Score=29.32 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=30.3
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhh
Q 003764 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEEN 139 (797)
Q Consensus 88 ks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~ 139 (797)
+..+..+.|++|+..- -..- |+.+|++||+.+|++.+.+-
T Consensus 65 ~G~~K~~~A~~~v~~~----------L~~~--gi~~t~~~i~~~IEaAV~~m 104 (108)
T PF09682_consen 65 KGEEKKAEAVQYVKER----------LKKK--GIKVTDEQIEGAIEAAVKEM 104 (108)
T ss_pred CcHHHHHHHHHHHHHH----------HHHc--CCCCCHHHHHHHHHHHHHHH
Confidence 6778888888887642 1112 67999999999999988763
No 166
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=27.79 E-value=1.2e+02 Score=28.47 Aligned_cols=60 Identities=20% Similarity=0.397 Sum_probs=34.2
Q ss_pred HHhcCCCCCHHhHHHHHHHHHhcC---CCCC-CHHH---------------HHHHcCCCeeeCHHHHHHHHHHHHHhhh
Q 003764 81 YIVSSKIKTPAQLEAAFSFFASTG---SENF-EVDE---------------FEEACGVGVEVSSEDIELTVNEVFEENK 140 (797)
Q Consensus 81 ~I~~g~iks~~Ql~aA~kyl~~~~---~~~i-d~~~---------------Fe~~cGVGv~vT~EqI~~~V~~~i~~~k 140 (797)
+|++|.+-|...|+..+..+.... .... +.+. ..++-=.||.||++||.++|..+...|.
T Consensus 6 AvVn~eiIt~sel~~~~~~~~~~~~~~~~~~~~~~~l~~qvLd~LI~e~L~~q~ak~~gI~vsd~evd~~i~~ia~~n~ 84 (118)
T PF09312_consen 6 AVVNDEIITQSELEQRLAQLKAQIQQQGQQIPPRNQLRKQVLDQLIDEKLQLQEAKRLGIKVSDEEVDEAIANIAKQNN 84 (118)
T ss_dssp EEESSSEEEHHHHHHHHHHHHHHHHTTT-----HHHHHHHHHHHHHHHHHHHHHHHHCT----HHHHHHHHHHHHHHTT
T ss_pred EEECCcCcCHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcC
Confidence 467777777777877777765220 0111 1111 2233346899999999999999887764
No 167
>PLN02207 UDP-glycosyltransferase
Probab=27.19 E-value=94 Score=36.60 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=47.8
Q ss_pred CCHHHH-HHHcCCCe------------eeCHHHHHHHHHHHHHhhhhHHHhhccccchhhhHHHHHhhCCCCChhhHHHH
Q 003764 108 FEVDEF-EEACGVGV------------EVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWADPKIVKQL 174 (797)
Q Consensus 108 id~~~F-e~~cGVGv------------~vT~EqI~~~V~~~i~~~k~~~~~~ry~~n~g~ll~~vr~~LkWAd~k~vK~~ 174 (797)
+..+.+ .+.-|||| .|+.|+|+++|++++.+ + .++|+-|...+-..+|+. .++|..=...
T Consensus 383 ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~----~~~~r~~a~~l~~~a~~A--~~~GGSS~~~ 455 (468)
T PLN02207 383 QLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-D----NNVVRKRVMDISQMIQRA--TKNGGSSFAA 455 (468)
T ss_pred hhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-c----hHHHHHHHHHHHHHHHHH--hcCCCcHHHH
Confidence 334444 55578887 46999999999999962 1 245666666666666654 3344444446
Q ss_pred HHHHHHHhcCCCc
Q 003764 175 IDARMYELLGERT 187 (797)
Q Consensus 175 vd~~~~~llgpk~ 187 (797)
++..+.++.|-||
T Consensus 456 l~~~v~~~~~~~~ 468 (468)
T PLN02207 456 IEKFIHDVIGIKT 468 (468)
T ss_pred HHHHHHHHHhccC
Confidence 6777777777664
No 168
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=26.08 E-value=1.3e+02 Score=30.69 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=31.9
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchh------chHHHHHHHHHHHHHcCCCC
Q 003764 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA------EKKEYIDHIEEIVQWMGWEP 340 (797)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~r------e~~e~~~~I~e~L~wLGl~p 340 (797)
-+.+||-| +|+||+..+. +.+.+ .+ +.++=+-.-++.+ ...+-.+.|...+.-.|++.
T Consensus 3 l~~GrF~P-----~H~GHl~~i~--~a~~~-~~-~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~~~~~~~~~ 66 (181)
T cd02168 3 VYIGRFQP-----FHNGHLAVVL--IALEK-AK-KVIILIGSARTARNIKNPWTSEEREVMIEAALSDAGADL 66 (181)
T ss_pred EEeeccCC-----CCHHHHHHHH--HHHHH-CC-eEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHHhccCCCc
Confidence 36789988 7999997653 33333 23 6666554433221 22333444444455555543
No 169
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=23.86 E-value=51 Score=34.38 Aligned_cols=38 Identities=26% Similarity=0.558 Sum_probs=24.8
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCch
Q 003764 273 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPE 319 (797)
Q Consensus 273 g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~ 319 (797)
|-+++||-| +|.||+..+ .+.+.+.- ..|+=|---+..
T Consensus 7 ~v~iGRFQP-----fH~GHl~~I--~~al~~~d--evII~IGSA~~s 44 (196)
T PRK13793 7 LVFIGRFQP-----FHLAHMQTI--EIALQQSR--YVILALGSAQME 44 (196)
T ss_pred EEEEecCCC-----CcHHHHHHH--HHHHHhCC--EEEEEEccCCCC
Confidence 458899999 899999764 44444422 566655544433
No 170
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=23.64 E-value=60 Score=28.12 Aligned_cols=29 Identities=10% Similarity=0.296 Sum_probs=23.9
Q ss_pred CCCCChhHHHHHHHhcCCCchhHHHHhhC
Q 003764 4 VSKGDKSEILELFLKIGLDDRTAKNTIAN 32 (797)
Q Consensus 4 ~~~~~~~~~~~~f~~iGL~e~kaket~KN 32 (797)
++..++...++.++.+|+++++++.+++|
T Consensus 6 ~~~~R~daA~dam~~lG~~~~~v~~vl~~ 34 (65)
T PF10440_consen 6 KGNERIDAALDAMRQLGFSKKQVRPVLKN 34 (65)
T ss_pred cCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45667778889999999999988887765
No 171
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=22.70 E-value=53 Score=33.62 Aligned_cols=59 Identities=24% Similarity=0.320 Sum_probs=33.8
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchh------chHHHHHHHHHHHHHcCCCC
Q 003764 273 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA------EKKEYIDHIEEIVQWMGWEP 340 (797)
Q Consensus 273 g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~r------e~~e~~~~I~e~L~wLGl~p 340 (797)
|=+++||-| +|.||+..+ .+.+-+ .+ ..++=|--.+..+ ...|-...|.+.|+-.|++.
T Consensus 6 gv~~GRFqP-----~H~GHl~vi--~~al~~-vD-eliI~iGSa~~~~t~~nPfTagER~~mi~~~L~~~~~~~ 70 (172)
T COG1056 6 GVYFGRFQP-----LHTGHLYVI--KRALSK-VD-ELIIVIGSAQESHTLKNPFTAGERIPMIRDRLREAGLDL 70 (172)
T ss_pred EEEEeccCC-----ccHhHHHHH--HHHHHh-CC-EEEEEEccCcccccccCCCCccchhHHHHHHHHhcCCCc
Confidence 558999999 999999985 344444 33 3333222111110 12344566677787777764
No 172
>COG3372 Predicted nuclease of restriction endonuclease-like fold [General function prediction only]
Probab=22.69 E-value=3.1e+02 Score=31.57 Aligned_cols=109 Identities=16% Similarity=0.289 Sum_probs=77.2
Q ss_pred hhHHHHHHHh-cCCCchhHHHHh------hCHHHHHHHHHHHHHccc-C--CCC-chhHHHHHHHHHhhCCCCCcCchhH
Q 003764 9 KSEILELFLK-IGLDDRTAKNTI------ANNKVTANLTAVIHEAAV-T--DGC-ERRIGNLLYTVATKYPTNALVHRPT 77 (797)
Q Consensus 9 ~~~~~~~f~~-iGL~e~kaket~------KN~kls~~L~~ii~~a~~-~--~~~-dk~~g~ll~~lat~~~~~~~~~~~~ 77 (797)
++++++.|++ +|.+-..-.|.+ +|-|+..-|..++...-. . +.. +..+-..|++++ +.....+|..
T Consensus 29 A~evI~~Fks~~Gkt~geL~e~l~~le~~~~~K~VRGlA~iler~c~fe~~s~~dp~~~R~~lFe~g---~~~s~eer~~ 105 (396)
T COG3372 29 AEEVIETFKSSLGKTYGELEEDLRDLEYAAKDKLVRGLAKILERECEFEVVSALDPREVRRFLFERG---PALSEEERQR 105 (396)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHhheeeeecccCChHHHHHHHHhcC---CCCChHHHHH
Confidence 4567888986 887754433322 222788888888864332 2 334 567788899988 3344568999
Q ss_pred HHHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHH
Q 003764 78 LLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIEL 130 (797)
Q Consensus 78 l~~~I~~g~iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~ 130 (797)
+.+.+++.-=.|.+|+..|+ | ++.+++.+-..|+ .+|||++-.
T Consensus 106 vl~~aA~~fsvs~eeie~al-y------aDleeek~L~~~p---~itPe~Ll~ 148 (396)
T COG3372 106 VLQEAADHFSVSPEEIEDAL-Y------ADLEEEKILVEFP---DITPEWLLR 148 (396)
T ss_pred HHHHHHHHhCCCHHHHHHHH-H------hccchhheeccCC---CCCHHHHHH
Confidence 99999999888999999998 2 2367777777777 799998753
No 173
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=22.01 E-value=76 Score=32.05 Aligned_cols=34 Identities=26% Similarity=0.536 Sum_probs=29.2
Q ss_pred CCCCCcchhhHHHHHHcCCChHHHHHHHHHhC-CCCCC
Q 003764 525 DGWDDPCLMTLAGLRRRGVTSTSINAFVQGIG-ISRSD 561 (797)
Q Consensus 525 ~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG-~s~~~ 561 (797)
+.|.|-|.-.|+.|...|++...|- ..|| +|++.
T Consensus 1 M~Wtde~~~~L~~lw~~G~SasqIA---~~lg~vsRnA 35 (162)
T PF07750_consen 1 MSWTDERVERLRKLWAEGLSASQIA---RQLGGVSRNA 35 (162)
T ss_pred CCCCHHHHHHHHHHHHcCCCHHHHH---HHhCCcchhh
Confidence 4799999999999999999999887 4667 77764
No 174
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=21.92 E-value=3e+02 Score=26.14 Aligned_cols=45 Identities=7% Similarity=0.152 Sum_probs=36.4
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHH
Q 003764 89 TPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFE 137 (797)
Q Consensus 89 s~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~ 137 (797)
...-+.+++.|+..|...+++.+++-+.+| +|+-.+....++++.
T Consensus 7 ~~~~i~~~~~~I~~~~~~~~sl~~lA~~~g----~S~~~l~r~Fk~~~G 51 (127)
T PRK11511 7 DAITIHSILDWIEDNLESPLSLEKVSERSG----YSKWHLQRMFKKETG 51 (127)
T ss_pred cHHHHHHHHHHHHHhcCCCCCHHHHHHHHC----cCHHHHHHHHHHHHC
Confidence 345678999999999888899999999999 667777776666653
No 175
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=21.71 E-value=1.8e+02 Score=26.49 Aligned_cols=62 Identities=21% Similarity=0.157 Sum_probs=42.4
Q ss_pred HHHHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhh
Q 003764 77 TLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEEN 139 (797)
Q Consensus 77 ~l~~~I~~g~iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~ 139 (797)
.++.-|.+...+|...++.++..+.... .-.+-.++-=.-.-|..-|||.|-+.|.++-++|
T Consensus 17 ~~v~~i~~~~~~~ee~~d~lv~hF~~it-eHP~gSDLIfYP~~~~edsPegIv~~vKeWRa~n 78 (85)
T PF01320_consen 17 EFVKEIFNAELKTEEEHDELVDHFEKIT-EHPDGSDLIFYPEDGREDSPEGIVKEVKEWRASN 78 (85)
T ss_dssp HHHHHHHHTCSSSCHHHHHHHHHHHHHH---TTTTHHHHS-STTSTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcC-CCCCCCceeeeCCCCCCCCHHHHHHHHHHHHHHc
Confidence 3578888888899999999998865431 1112222222222368889999999999998875
No 176
>PTZ00183 centrin; Provisional
Probab=21.47 E-value=6.6e+02 Score=23.63 Aligned_cols=47 Identities=13% Similarity=0.363 Sum_probs=36.0
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHcCC-CeeeCHHHHHHHHHHH
Q 003764 89 TPAQLEAAFSFFASTGSENFEVDEFEEACGV-GVEVSSEDIELTVNEV 135 (797)
Q Consensus 89 s~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGV-Gv~vT~EqI~~~V~~~ 135 (797)
+..++..+++.+..+..+.++..+|...|-- |..++++++...+..+
T Consensus 88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~ 135 (158)
T PTZ00183 88 PREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEA 135 (158)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 4577889999887666677999999887742 5668999988877654
No 177
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.97 E-value=2.7e+02 Score=31.05 Aligned_cols=86 Identities=17% Similarity=0.307 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccccchhhhHHHHHhhCCCCChhhHH
Q 003764 93 LEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWADPKIVK 172 (797)
Q Consensus 93 l~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~k~~~~~~ry~~n~g~ll~~vr~~LkWAd~k~vK 172 (797)
|.|.|+++.... ..-+..++++.|- =.|+++..++.-...- +...|+.-.+--|++-||+.+-|.|+..=|
T Consensus 206 l~a~i~ll~qaa-~~~~~~~l~~~~a----adPdd~~aa~~lA~~~----~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk 276 (304)
T COG3118 206 LQAQIELLEQAA-ATPEIQDLQRRLA----ADPDDVEAALALADQL----HLVGRNEAALEHLLALLRRDRGFEDGEARK 276 (304)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHH----hCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhcccccCcHHHH
Confidence 567788776543 4556788888776 5677887777765544 445777777889999999999999999999
Q ss_pred HHHHHHHHHhcCCCchh
Q 003764 173 QLIDARMYELLGERTAA 189 (797)
Q Consensus 173 ~~vd~~~~~llgpk~~~ 189 (797)
..|+ +++++||.+..
T Consensus 277 ~lle--~f~~~g~~Dp~ 291 (304)
T COG3118 277 TLLE--LFEAFGPADPL 291 (304)
T ss_pred HHHH--HHHhcCCCCHH
Confidence 9998 88999999764
No 178
>PRK13503 transcriptional activator RhaS; Provisional
Probab=20.28 E-value=5.8e+02 Score=26.85 Aligned_cols=45 Identities=9% Similarity=0.193 Sum_probs=38.4
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHH
Q 003764 89 TPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFE 137 (797)
Q Consensus 89 s~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~ 137 (797)
+..++..++.|+..|...+++.+++-+.+| +|+-.+.+..+++..
T Consensus 169 ~~~~i~~~~~~I~~~~~~~~tl~~lA~~~~----lS~~~l~r~Fk~~~G 213 (278)
T PRK13503 169 SDARLNQLLAWLEDHFAEEVNWEALADQFS----LSLRTLHRQLKQQTG 213 (278)
T ss_pred cHHHHHHHHHHHHHhhcCCCCHHHHHHHHC----CCHHHHHHHHHHHhC
Confidence 457799999999999888999999999999 788888777776653
Done!