Query 003764
Match_columns 797
No_of_seqs 386 out of 2426
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 03:18:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qtq_A GLNRS, protein (glutami 100.0 2E-141 6E-146 1208.7 47.4 526 261-796 12-552 (553)
2 2hz7_A Glutaminyl-tRNA synthet 100.0 4E-137 1E-141 1215.1 49.1 523 261-795 52-634 (851)
3 3aii_A Glutamyl-tRNA synthetas 100.0 5E-119 2E-123 1023.7 37.5 454 269-782 91-548 (553)
4 4gri_A Glutamate--tRNA ligase; 100.0 2E-75 6.7E-80 668.8 19.3 311 262-597 10-344 (512)
5 2cfo_A Glutamyl-tRNA synthetas 100.0 3.8E-73 1.3E-77 645.4 21.9 294 274-597 1-319 (492)
6 2ja2_A Glutamyl-tRNA synthetas 100.0 4.5E-73 1.6E-77 644.1 22.3 311 271-610 3-347 (498)
7 1j09_A Glutamyl-tRNA synthetas 100.0 4.1E-73 1.4E-77 641.7 19.5 297 274-597 1-314 (468)
8 4g6z_A Glutamate-tRNA ligase; 100.0 5.6E-72 1.9E-76 632.4 19.3 301 272-611 23-354 (490)
9 3afh_A Glutamyl-tRNA synthetas 100.0 6.7E-70 2.3E-74 617.8 12.7 289 271-597 22-325 (488)
10 3al0_C Glutamyl-tRNA(Gln) amid 100.0 7.7E-67 2.6E-71 604.6 8.9 300 273-610 128-448 (592)
11 2o5r_A Glutamyl-tRNA synthetas 100.0 1.9E-65 6.6E-70 581.5 18.7 308 275-610 14-352 (481)
12 1nzj_A Hypothetical protein YA 100.0 2E-63 6.8E-68 534.1 20.4 267 272-586 3-288 (298)
13 3tl4_X Glutaminyl-tRNA synthet 100.0 3E-55 1E-59 438.6 20.0 181 9-191 4-186 (187)
14 1irx_A Lysyl-tRNA synthetase; 99.9 8E-29 2.8E-33 284.7 6.2 277 274-597 21-351 (523)
15 1li5_A Cysrs, cysteinyl-tRNA s 99.9 1.2E-24 4E-29 246.6 20.4 253 280-575 29-315 (461)
16 3tqo_A Cysteinyl-tRNA syntheta 99.9 4.1E-25 1.4E-29 249.4 15.3 252 280-574 32-317 (462)
17 3c8z_A Cysteinyl-tRNA syntheta 99.9 1.7E-22 5.7E-27 226.1 16.1 261 278-575 44-341 (414)
18 3sp1_A Cysteinyl-tRNA syntheta 99.9 3.5E-22 1.2E-26 226.9 16.8 252 280-575 49-349 (501)
19 2csx_A Methionyl-tRNA syntheta 99.8 2.4E-19 8.3E-24 204.5 17.6 267 274-575 7-345 (497)
20 2d5b_A Methionyl-tRNA syntheta 99.7 1.4E-17 4.6E-22 190.0 18.3 274 275-574 6-346 (500)
21 2dlc_X Tyrosyl-tRNA synthetase 99.7 3.4E-16 1.2E-20 174.0 13.7 194 261-519 26-237 (394)
22 1iq0_A Arginyl-tRNA synthetase 99.6 1.4E-15 4.8E-20 177.3 16.9 297 251-597 75-466 (592)
23 4dlp_A Aminoacyl-tRNA syntheta 99.6 5.9E-14 2E-18 161.7 21.1 95 275-369 28-142 (536)
24 3h99_A Methionyl-tRNA syntheta 99.6 1.3E-13 4.3E-18 159.7 23.5 277 275-571 21-392 (560)
25 2x1l_A Methionyl-tRNA syntheta 99.5 3.2E-14 1.1E-18 163.2 15.9 275 275-575 15-360 (524)
26 1n3l_A Tyrosyl-tRNA synthetase 99.4 1.6E-12 5.5E-17 143.6 17.2 193 260-517 23-230 (372)
27 2cyb_A Tyrosyl-tRNA synthetase 99.4 6.2E-13 2.1E-17 144.2 12.8 191 261-516 20-221 (323)
28 3fnr_A Arginyl-tRNA synthetase 99.4 5.5E-12 1.9E-16 142.9 17.2 259 272-569 29-328 (464)
29 3kfl_A Methionyl-tRNA syntheta 99.3 2.8E-11 9.5E-16 140.4 19.4 94 275-368 29-142 (564)
30 1f7u_A Arginyl-tRNA synthetase 99.3 3.9E-12 1.3E-16 148.5 11.8 250 272-597 142-482 (607)
31 2zue_A Arginyl-tRNA synthetase 99.3 1.4E-11 4.7E-16 144.6 12.6 98 272-369 118-295 (629)
32 3u1f_A Methionyl-tRNA syntheta 99.2 1.2E-10 4.2E-15 133.9 18.1 94 275-368 12-125 (542)
33 1rqg_A Methionyl-tRNA syntheta 99.1 1.8E-09 6.2E-14 128.6 20.2 94 275-368 5-119 (722)
34 2cya_A Tyrosyl-tRNA synthetase 98.7 1.5E-07 5E-12 103.7 15.8 193 260-515 22-244 (364)
35 2g36_A Tryptophanyl-tRNA synth 98.6 3.2E-07 1.1E-11 100.1 14.3 181 273-516 13-212 (340)
36 2yy5_A Tryptophanyl-tRNA synth 98.6 5.8E-08 2E-12 106.3 7.1 181 275-517 7-210 (348)
37 2zp1_A Tyrosyl-tRNA synthetase 98.5 2.2E-07 7.6E-12 100.4 11.1 186 261-516 17-211 (314)
38 1i6k_A TRPRS, tryptophanyl-tRN 98.4 7E-07 2.4E-11 97.0 10.3 177 275-517 4-200 (328)
39 2el7_A Tryptophanyl-tRNA synth 98.3 3.1E-06 1.1E-10 92.2 13.3 172 282-516 9-202 (337)
40 1yi8_B Tryptophanyl-tRNA synth 98.3 1.1E-06 3.7E-11 96.4 8.2 182 273-516 23-222 (351)
41 2v0c_A Aminoacyl-tRNA syntheta 97.9 2E-05 7E-10 95.8 10.1 94 275-368 36-151 (878)
42 4arc_A Leucine--tRNA ligase; l 97.9 3E-05 1E-09 94.1 10.0 94 275-368 56-171 (880)
43 1wkb_A Leucyl-tRNA synthetase; 97.8 3E-05 1E-09 93.5 9.8 94 275-368 37-178 (810)
44 3jxe_A Tryptophanyl-tRNA synth 97.7 0.00044 1.5E-08 76.8 16.0 171 274-516 75-260 (392)
45 3hzr_A Tryptophanyl-tRNA synth 97.6 0.00033 1.1E-08 77.6 11.8 76 282-359 90-176 (386)
46 3tzl_A Tryptophanyl-tRNA synth 97.5 0.00012 4E-09 79.3 8.0 87 282-377 11-105 (322)
47 1ile_A Ilers, isoleucyl-tRNA s 97.5 5E-05 1.7E-09 91.8 4.0 94 275-368 41-173 (821)
48 1ffy_A Isoleucyl-tRNA syntheta 97.5 0.00011 3.9E-09 89.7 7.0 94 275-368 51-178 (917)
49 1gax_A Valrs, valyl-tRNA synth 97.4 0.00022 7.5E-09 86.6 9.3 94 275-368 37-168 (862)
50 3hv0_A Tryptophanyl-tRNA synth 97.4 0.00058 2E-08 75.8 11.9 81 274-357 76-168 (393)
51 3a04_A Tryptophanyl-tRNA synth 97.3 0.0016 5.4E-08 71.9 13.4 117 247-379 51-177 (372)
52 1wz2_A Leucyl-tRNA synthetase; 97.3 0.00019 6.5E-09 88.2 6.3 94 275-368 37-178 (967)
53 1h3f_A Tyrosyl-tRNA synthetase 97.2 0.00035 1.2E-08 78.5 7.3 191 260-516 24-239 (432)
54 2ip1_A Tryptophanyl-tRNA synth 97.2 0.0023 7.9E-08 71.9 12.9 187 262-516 91-302 (432)
55 3i05_A Tryptophanyl-tRNA synth 97.2 0.00086 2.9E-08 74.5 9.1 69 282-351 86-165 (395)
56 2cyc_A Tyrosyl-tRNA synthetase 97.1 0.009 3.1E-07 65.9 16.7 110 261-377 21-147 (375)
57 3tze_A Tryptophanyl-tRNA synth 97.1 0.0023 7.8E-08 71.3 11.6 69 282-351 109-188 (406)
58 3foc_A Tryptophanyl-tRNA synth 97.1 0.0014 4.9E-08 73.8 9.9 95 275-379 94-202 (451)
59 2jan_A Tyrosyl-tRNA synthetase 97.0 0.017 5.8E-07 64.8 18.1 221 261-555 21-272 (432)
60 2j5b_A Tyrosyl-tRNA synthetase 97.0 0.0054 1.8E-07 67.0 13.1 88 261-350 28-127 (348)
61 3prh_A Tryptophanyl-tRNA synth 96.6 0.0046 1.6E-07 68.5 9.5 91 275-377 38-137 (388)
62 1jil_A Tyrrs, tyrosyl-tRNA syn 96.6 0.076 2.6E-06 59.4 19.3 218 261-555 21-271 (420)
63 3vgj_A Tyrosyl-tRNA synthetase 96.5 0.033 1.1E-06 61.4 15.5 88 261-350 44-143 (373)
64 3p0j_A Tyrosyl-tRNA synthetase 96.5 0.023 8E-07 67.3 14.5 190 261-516 28-237 (690)
65 1r6t_A Tryptophanyl-tRNA synth 96.5 0.0077 2.6E-07 68.5 10.0 174 275-516 158-356 (477)
66 3al0_B Aspartyl/glutamyl-tRNA( 96.2 0.047 1.6E-06 61.9 14.1 157 13-178 307-478 (482)
67 3ip4_B Aspartyl/glutamyl-tRNA( 96.2 0.07 2.4E-06 60.5 15.4 164 13-184 300-477 (483)
68 1r6u_A Tryptophanyl-tRNA synth 96.1 0.013 4.4E-07 65.9 9.4 74 275-351 111-195 (437)
69 2ts1_A Tyrosyl-tRNA synthetase 96.1 0.22 7.6E-06 55.6 18.9 81 466-555 185-270 (419)
70 2yxn_A Tyrosyl-tRNA synthetase 95.9 0.058 2E-06 58.3 12.8 87 261-350 22-130 (322)
71 2pid_A Tyrosyl-tRNA synthetase 95.7 0.063 2.2E-06 58.8 12.4 97 466-577 210-310 (356)
72 1ile_A Ilers, isoleucyl-tRNA s 95.1 0.019 6.6E-07 69.3 6.3 68 496-579 577-645 (821)
73 3h0l_B Aspartyl/glutamyl-tRNA( 94.2 0.1 3.4E-06 59.2 8.7 159 13-179 303-475 (478)
74 1zq1_C Glutamyl-tRNA(Gln) amid 93.9 0.036 1.2E-06 64.6 4.5 161 13-183 463-631 (633)
75 3sz3_A Tryptophanyl-tRNA synth 93.3 0.097 3.3E-06 57.0 6.3 93 274-377 8-108 (341)
76 3n9i_A Tryptophanyl-tRNA synth 92.7 0.11 3.6E-06 56.8 5.6 91 275-377 18-117 (346)
77 1wkb_A Leucyl-tRNA synthetase; 92.1 0.21 7E-06 60.2 7.7 63 494-572 634-697 (810)
78 2d6f_C Glutamyl-tRNA(Gln) amid 91.9 0.033 1.1E-06 64.8 0.4 156 13-179 451-615 (619)
79 1wz2_A Leucyl-tRNA synthetase; 91.8 0.29 9.8E-06 60.3 8.6 62 495-572 635-697 (967)
80 1ng6_A Hypothetical protein YQ 91.4 0.54 1.8E-05 45.2 8.2 61 112-178 85-146 (148)
81 1ffy_A Isoleucyl-tRNA syntheta 90.3 0.31 1.1E-05 59.6 6.8 60 496-572 581-641 (917)
82 1gax_A Valrs, valyl-tRNA synth 89.9 0.26 9E-06 59.9 5.6 61 496-572 514-575 (862)
83 2hz7_A Glutaminyl-tRNA synthet 89.7 0.063 2.2E-06 64.6 0.0 153 16-178 688-849 (851)
84 3p0j_A Tyrosyl-tRNA synthetase 89.3 0.81 2.8E-05 54.2 9.0 73 278-351 386-470 (690)
85 4arc_A Leucine--tRNA ligase; l 82.6 1.7 5.9E-05 52.8 7.3 48 509-572 639-686 (880)
86 1y42_X Tyrosyl-tRNA synthetase 73.8 9.9 0.00034 42.0 9.4 52 261-315 53-105 (392)
87 2v0c_A Aminoacyl-tRNA syntheta 73.7 6.6 0.00023 47.8 8.6 49 508-572 636-684 (878)
88 2lhi_A Calmodulin, serine/thre 54.6 39 0.0013 32.1 8.4 47 89-135 82-129 (176)
89 4dvc_A Thiol:disulfide interch 54.0 21 0.00073 33.3 6.4 42 6-47 103-144 (184)
90 1h8b_A ACT-EF34, alpha-actinin 54.0 20 0.0007 30.0 5.5 42 87-135 6-47 (75)
91 2ehb_A Calcineurin B-like prot 48.6 99 0.0034 29.2 10.3 50 89-138 109-163 (207)
92 2lmt_A Calmodulin-related prot 47.3 53 0.0018 29.6 7.8 49 87-135 79-128 (148)
93 2p12_A Hypothetical protein DU 41.3 34 0.0011 33.7 5.5 53 108-167 120-175 (176)
94 3u0k_A Rcamp; fluorescent prot 40.6 64 0.0022 36.1 8.3 47 89-135 373-420 (440)
95 2lv7_A Calcium-binding protein 40.2 14 0.00047 32.3 2.4 45 91-135 36-81 (100)
96 2zfd_A Calcineurin B-like prot 39.8 1.8E+02 0.0062 28.1 10.9 50 89-138 120-174 (226)
97 3khe_A Calmodulin-like domain 38.5 32 0.0011 31.9 4.9 49 86-135 118-166 (191)
98 3i5g_C Myosin catalytic light 38.1 35 0.0012 31.8 5.0 49 87-135 81-130 (159)
99 3ox6_A Calcium-binding protein 37.6 1.6E+02 0.0056 25.5 9.4 46 90-135 87-134 (153)
100 2kz2_A Calmodulin, CAM; TR2C, 36.5 60 0.002 27.3 5.9 61 73-135 13-74 (94)
101 2d8n_A Recoverin; structural g 35.6 1.6E+02 0.0055 27.6 9.5 25 7-31 16-40 (207)
102 3u43_A Colicin-E2 immunity pro 34.5 72 0.0025 28.3 6.0 61 77-139 17-78 (94)
103 3mse_B Calcium-dependent prote 34.4 1.6E+02 0.0054 27.3 9.1 47 90-137 107-153 (180)
104 2ot3_A RAB5 GDP/GTP exchange f 32.8 77 0.0026 33.0 7.1 74 50-124 187-268 (274)
105 3fs7_A Parvalbumin, thymic; ca 32.8 1.6E+02 0.0055 24.6 8.1 48 88-135 39-90 (109)
106 3cuq_A Vacuolar-sorting protei 32.4 1.5E+02 0.005 30.5 8.8 60 8-68 11-81 (234)
107 3pm8_A PFCDPK2, calcium-depend 32.2 35 0.0012 32.7 4.1 61 75-135 113-176 (197)
108 1wdc_B Scallop myosin; calcium 31.4 1.1E+02 0.0036 27.3 7.1 48 88-135 84-132 (156)
109 2pvb_A Protein (parvalbumin); 31.3 60 0.002 27.4 5.1 48 88-135 38-89 (108)
110 2l2e_A Calcium-binding protein 30.2 3.2E+02 0.011 25.0 12.1 129 6-135 7-156 (190)
111 1s1e_A KV channel interacting 30.2 1.5E+02 0.005 28.9 8.4 29 89-117 123-151 (224)
112 1pva_A Parvalbumin; calcium bi 29.0 68 0.0023 27.0 5.0 48 88-135 39-90 (110)
113 2k9s_A Arabinose operon regula 27.7 1.2E+02 0.004 26.1 6.4 43 91-137 3-46 (107)
114 2efe_A Similarity to vacuolar 27.3 1.2E+02 0.0041 31.3 7.4 66 50-115 184-256 (267)
115 1fpw_A Yeast frequenin, calciu 27.3 2E+02 0.0069 26.3 8.4 48 88-135 96-156 (190)
116 2bl0_C Myosin regulatory light 27.2 2.3E+02 0.0079 24.4 8.4 49 88-136 76-125 (142)
117 1k2h_A S100A1, S-100 protein, 26.9 55 0.0019 26.8 3.9 46 91-136 9-62 (93)
118 1s6c_A KV4 potassium channel-i 26.8 3.5E+02 0.012 24.5 10.0 29 89-117 90-118 (183)
119 2ct9_A Calcium-binding protein 26.5 52 0.0018 31.5 4.2 50 89-138 111-162 (208)
120 3j04_B Myosin regulatory light 26.4 93 0.0032 27.1 5.6 48 88-135 73-121 (143)
121 1y42_X Tyrosyl-tRNA synthetase 26.2 1E+02 0.0034 33.9 6.8 51 466-516 232-300 (392)
122 3i5g_B Myosin regulatory light 26.0 41 0.0014 31.2 3.2 47 88-134 82-129 (153)
123 3mn2_A Probable ARAC family tr 25.4 1.5E+02 0.0053 25.3 6.8 42 91-136 2-43 (108)
124 3ff5_A PEX14P, peroxisomal bio 24.4 98 0.0034 24.7 4.6 41 90-134 10-53 (54)
125 1gxg_A Colicin E8 immunity pro 24.0 2.1E+02 0.007 24.8 7.0 60 77-139 17-77 (85)
126 1rro_A RAT oncomodulin; calciu 24.0 70 0.0024 26.9 4.1 48 88-135 38-89 (108)
127 1g8i_A Frequenin, neuronal cal 23.7 2.8E+02 0.0096 25.3 8.7 30 88-117 96-125 (190)
128 2qac_A Myosin A tail domain in 23.3 1.6E+02 0.0054 25.8 6.6 47 89-135 82-129 (146)
129 5pal_A Parvalbumin; calcium-bi 23.2 74 0.0025 26.8 4.1 48 88-135 38-89 (109)
130 1tiz_A Calmodulin-related prot 23.2 55 0.0019 24.7 3.0 44 92-135 2-46 (67)
131 2mys_C Myosin; muscle protein, 22.9 3.2E+02 0.011 23.5 8.5 47 88-134 82-129 (149)
132 1exr_A Calmodulin; high resolu 22.6 76 0.0026 28.2 4.3 47 89-135 81-128 (148)
133 2jul_A Calsenilin; EF-hand, ca 22.3 3.9E+02 0.013 26.3 10.0 30 88-117 162-191 (256)
134 2obh_A Centrin-2; DNA repair c 22.0 96 0.0033 27.5 4.8 46 90-135 78-124 (143)
135 1avs_A Troponin C; muscle cont 21.9 81 0.0028 25.7 4.0 45 91-135 20-65 (90)
136 1fr2_A Colicin E9 immunity pro 21.0 2E+02 0.0068 25.0 6.3 61 77-139 17-78 (86)
137 3dtp_E RLC, myosin regulatory 20.4 99 0.0034 29.3 4.8 48 88-135 123-170 (196)
138 3a4u_B Multiple coagulation fa 20.1 87 0.003 28.5 4.2 51 88-138 65-124 (143)
No 1
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=100.00 E-value=1.6e-141 Score=1208.66 Aligned_cols=526 Identities=49% Similarity=0.866 Sum_probs=492.7
Q ss_pred HHHHHHhhhhc-CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCC
Q 003764 261 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 339 (797)
Q Consensus 261 ~~~~~~~~~~~-~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~ 339 (797)
..++++.|+.. .++|||||||||||||||||||||++||++||+|||+|+||||||||+|+.++|+++|+++|+|||+.
T Consensus 12 ~~~i~~dl~~~~~~~v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDTD~~R~~~e~~~~I~edL~wLGl~ 91 (553)
T 1qtq_A 12 RQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFH 91 (553)
T ss_dssp HHHHHHHHHHTSCSSCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhHhhcCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCchhcCHHHHHHHHHHHHHcCCC
Confidence 45677777764 45799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-cccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhc----cCCCCCCCCCChHHHhHHHHHhhcCcccCCceE
Q 003764 340 PF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 414 (797)
Q Consensus 340 pd-~~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~----~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~ 414 (797)
|| .++|||+||+.||++|++||++|+||+|+||+++|++.|+ ++++++||+++++|++.+|++|++|.+.+|+++
T Consensus 92 wde~~~~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~g~~~ 171 (553)
T 1qtq_A 92 WSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKAC 171 (553)
T ss_dssp CSSSCEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSCE
T ss_pred CCCCCeehcccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhCCCccCCceE
Confidence 96 6899999999999999999999999999999999999885 478889999999999999999999998889999
Q ss_pred EEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCC-
Q 003764 415 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY- 493 (797)
Q Consensus 415 lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~- 493 (797)
||+|+++.+++.+++|+|+||+...+||+|||+|+||||||||||||||+|||||||||+||++|++.|.||+++||++
T Consensus 172 lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~la~vvDDh~~GITHviRg~e~~~n~~~q~~l~~alg~~~ 251 (553)
T 1qtq_A 172 LRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPV 251 (553)
T ss_dssp EEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHTTCSEEEEEGGGTTTHHHHHHHHHTSCCSC
T ss_pred EEEecccccCCCCCCCcEEEEecCCCCCccCCCCccccccccccEEEeccCCcceEeeccchhhhHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceeeeeeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHH
Q 003764 494 QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 573 (797)
Q Consensus 494 ~P~~~~f~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~i 573 (797)
.|++|+|+|||++|+|||||+++++|++|+|+||||||++||++||++||+|+||++||+++||++++..+++++|++++
T Consensus 252 ~P~~~~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~~~~~~e~~~le~~~ 331 (553)
T 1qtq_A 252 HPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCI 331 (553)
T ss_dssp CCEEEEECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHHHHHHHH
T ss_pred CCCeEEEEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCCCCCccccchhhHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred HHhhhccCCceeeEeccceEEEEcCCCCceeeeccccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCCC
Q 003764 574 REELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGK 653 (797)
Q Consensus 574 r~~~~~~~~R~~av~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyie~~D~~~~~~~~~~~l~~g~ 653 (797)
+..++..++|+|+||||+||.|+|+| +..+.+++|+||. ++++|+|.++|++.||||++||++.++|+||||+||+
T Consensus 332 ~~~l~~~~~r~~av~d~~Kl~~~N~~-~~~~~~~~p~~p~---~~~~g~r~~~~~~~i~ie~~Df~e~~~~~~~rl~~g~ 407 (553)
T 1qtq_A 332 REDLNENAPRAMAVIDPVKLVIENYQ-GEGEMVTMPNHPN---KPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGK 407 (553)
T ss_dssp HHHHHHHSCEECEESSEEEEEBTTCC-SSCEEEEEESCSS---CGGGCEEEEEECSEEEEETTTEESSCCTTCCSEETTS
T ss_pred HhCcccccccccceeccceEEEEcCC-CceEEEEecCCCC---ChHHhhhhHhhCceEEEEHHHhhccCccccccCCCCC
Confidence 98888889999999999999999998 5556788999988 7999999999999999999999999999999999999
Q ss_pred EEEEeeeeeEEEeEeeecCCCCCEEEEEEEEcCCC-------CCCCCeeEEeccCCCCCCCCeeEEEEeccccCCCCCCC
Q 003764 654 SVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSK-------KTKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPA 726 (797)
Q Consensus 654 ~v~l~~~~~i~~~~~~~~~~~g~v~e~~~~~~~~~-------~~k~k~~I~Wv~~~~~~~~~~~~e~r~y~~Lf~~~~p~ 726 (797)
+|+|+++|+|+|++++ +|++|+|++|+|+|+++. .+|+|++|||||+ .++++||||+|++||++++|+
T Consensus 408 ~vrL~~~~~i~~~~~~-kd~~g~v~~~~~~~~~~~~~g~~~~~~k~k~~ihWv~~----~~~~~~~~~~yd~L~~~~~p~ 482 (553)
T 1qtq_A 408 EVRLRNAYVIKAERVE-KDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSA----AHALPVEIRLYDRLFSVPNPG 482 (553)
T ss_dssp EEEETTSCEEEEEEEE-CCSSSCCCEEEECCCSSCC-----------CEECCEES----TTCEEEEEEEECCSBSSSCGG
T ss_pred EEEeccEEEEEEEEEE-EcCCCCEEEEEEEEecccccCCCccccccCCEEEEeec----CCCEeEEEEecccccCCCCCC
Confidence 9999999999999998 889999999999998852 3688999999998 578999999999999999998
Q ss_pred CccCccccCCCCCceeeceeEeccccccCCCCCeEEEEEeeeEEEec-CCCCCceeEeeecCCCCCCCCCC
Q 003764 727 ELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDK-DSTPEKLVFNRTVTLKDSFPKGG 796 (797)
Q Consensus 727 ~~~~~~~~~n~~S~~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~-~~~~~~~v~n~~v~lk~~~~k~~ 796 (797)
+.++|+++|||+|+.++ .|++||++.++++|++|||||.||||||+ ||+++++||||||+||++++|..
T Consensus 483 ~~~~~~~~~np~s~~~~-~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~~vfnr~v~l~~~~~~~~ 552 (553)
T 1qtq_A 483 AADDFLSVINPESLVIK-QGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVG 552 (553)
T ss_dssp GSTTGGGGBCTTSEEEE-EEEECGGGGGCCTTCEEEETTTEEEESCTTTCCSSSCEEEEEEECCCC-----
T ss_pred cCcchhhhcCCcchhhe-eeEecHhHhhCCCCCEEEEEEeeEEEECcCCCCCCCeeEEeEEEcccchhhhc
Confidence 66899999999999987 68999999999999999999999999996 89999999999999999999853
No 2
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=100.00 E-value=3.6e-137 Score=1215.07 Aligned_cols=523 Identities=41% Similarity=0.732 Sum_probs=489.9
Q ss_pred HHHHHHhhhhc-CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCC
Q 003764 261 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 339 (797)
Q Consensus 261 ~~~~~~~~~~~-~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~ 339 (797)
.++++++|... .+.|||||||||||||||||||||++||++||+|||+|+||||||||+|+.++|+++|+++|+|||+.
T Consensus 52 ~~ii~~dl~~g~~~~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~IledL~wLGl~ 131 (851)
T 2hz7_A 52 TEIIERDLEAGKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDLKWLGLD 131 (851)
T ss_dssp HHHHHHHHHTTSCSSCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCTTTCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhcCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCC
Confidence 56788888873 45799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-cccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhc----cCCCCCCCCCChHHHhHHHHHhhcCcccCCceE
Q 003764 340 PF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 414 (797)
Q Consensus 340 pd-~~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~----~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~ 414 (797)
|| .++|||+||+.|+++|++||++|+||+|+||+++|+++|+ ++++++||+++++|++.+|++|++|.+.+|+++
T Consensus 132 wde~~~~qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~fe~m~~G~~~~g~~v 211 (851)
T 2hz7_A 132 WGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRRMKAGEFADGEHV 211 (851)
T ss_dssp CTTCEEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSCE
T ss_pred CCCCcccHhhhHHHHHHHHHHHHHCCCcEeecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHHHHHhcCCcccCCee
Confidence 96 6899999999999999999999999999999999999876 377889999999999999999999999999999
Q ss_pred EEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCC
Q 003764 415 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQ 494 (797)
Q Consensus 415 lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~ 494 (797)
||+|+++.+++.+++|||+||+...+||+||++|+||||||||||||||+|||||||||.||++|++.|.||+++||++.
T Consensus 212 lR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtYhfA~vVDD~~~GITHViRG~D~~~n~~~q~~l~~alG~~~ 291 (851)
T 2hz7_A 212 LRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDP 291 (851)
T ss_dssp EEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEEGGGTTTHHHHHHHHHHTTCSS
T ss_pred EEEeccccccCCCCCCcEEEEecCCCCCccCCCCccccccceeeEeeeccCCcceeecchhhhhChHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred -CceeeeeeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHH
Q 003764 495 -PYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 573 (797)
Q Consensus 495 -P~~~~f~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~i 573 (797)
|++|+|+|||++|+|||||+++++|++|+|+||||||++||++||++||+|+||++||+++||++++..+++++|+.++
T Consensus 292 ~P~~~~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG~s~~~~~~e~~~le~~~ 371 (851)
T 2hz7_A 292 RPHQYEFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYENAV 371 (851)
T ss_dssp CCEEEEECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCSSCEEECHHHHHHHH
T ss_pred CCCceEEEEecCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhcCCCCCcccccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred HHhhhccCCceeeEeccceEEEEcCCCCceeeeccccCCCCCCC-------------------CCCceeEecccceEEEe
Q 003764 574 REELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQAD-------------------DASAFYKVPFSNVVYIE 634 (797)
Q Consensus 574 r~~~~~~~~R~~av~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~-------------------~~~g~~~v~~~~~iyie 634 (797)
+..++..++|+|+||||+||.|+|+|++. .+++|+||+ + |++|+|.|+|+++||||
T Consensus 372 r~~l~~~~~r~~av~d~~Kl~~~N~~~~~--~~~~p~~p~---~~~~~~~~~~~~~~~~~~~~~~~g~r~v~~~~~iyie 446 (851)
T 2hz7_A 372 RDDLNHRAPRVMAVLDPVKVTLTNLDGEK--TLSLPYWPH---DVVRDSPDGLVGMPGGGRVAPEEAVRDVPLTRELYIE 446 (851)
T ss_dssp HHHHHTTCCEECEESSEEEEEETTCCSCE--EEEEESSCH---HHHHTCTTSCEECSSSCEECGGGCEEEEEECSEEEEE
T ss_pred HhcccccccccceEecceeEEEecCCCCe--EEEecCCcc---cccccccccccccccccccCccCceEEEEEcCeEEEE
Confidence 99999989999999999999999999875 788999998 5 89999999999999999
Q ss_pred cCcccccCCccccCcCCCCEEEEeeeeeEEEeEeeecCCCCCEEEEEEEEcCCCCCCCCeeEEeccCCCCCCCCeeEEEE
Q 003764 635 HSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKGVLHWVAEPSPGVNPLRVEVR 714 (797)
Q Consensus 635 ~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~~~~~~~g~v~e~~~~~~~~~~~k~k~~I~Wv~~~~~~~~~~~~e~r 714 (797)
++||++.++++||||+||++|+|+++|+|+|++++ +|++|+|++|+|+|..+. +|+|++|||||+ .++++||||
T Consensus 447 ~~Df~e~~~~~~~rl~~g~~vrL~~~~~i~~~~~~-kd~~g~v~~~~~~~~~~~-~k~k~~ihWv~~----~~~~~~e~r 520 (851)
T 2hz7_A 447 RDDFSPAPPKGFKRLTPGGTVRLRGAGIIRADDFG-TDEAGQVTHIRATLLGED-AKAAGVIHWVSA----ERALPAEFR 520 (851)
T ss_dssp GGGBCSSCCTTCCSBCTTCEEEETTTEEEEEEEEE-ECTTSCEEEEEEEECCTT-CCCSCEECCEET----TTCEEEEEE
T ss_pred HHHhhhcccccceecCCCCEEEecCeEEEEEEEEE-ecCCCCEEEEEEEEcccC-CccCceEEEeec----CCCeeEEEE
Confidence 99999999999999999999999999999999998 888999999999997554 688999999998 568999999
Q ss_pred eccccCCCCCCCC----------------------------ccCccccCCCCCceeeceeEeccccccCCCCCeEEEEEe
Q 003764 715 LFEKLFNSENPAE----------------------------LDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERL 766 (797)
Q Consensus 715 ~y~~Lf~~~~p~~----------------------------~~~~~~~~n~~S~~~~~~~~~e~~~~~~~~~~~~QfeR~ 766 (797)
+|++||++++|++ .++|+++|||+|++++ .|++||++.++++|++|||||+
T Consensus 521 ~yd~Lf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~s~~~~-~~~~e~~~~~~~~~~~~QfeR~ 599 (851)
T 2hz7_A 521 LYDRLFRVPHPEGENADVEDDSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVL-RGYVEPSVAGDPADTRYQFERQ 599 (851)
T ss_dssp EECCSBSSSCTTCCC----------------------------CGGGGBCTTSEEEE-EEEECGGGGGSCTTCEEEETTT
T ss_pred ecccccCCCCcccccccccccccccccccccccccccccccCccHHHhcCCccceee-eeEEchhhhhCCCCCEEEEEEe
Confidence 9999999999975 3589999999999988 5899999999999999999999
Q ss_pred eeEEEec------CCCCCceeEeeecCCCCCCCCC
Q 003764 767 GYFAVDK------DSTPEKLVFNRTVTLKDSFPKG 795 (797)
Q Consensus 767 Gyf~~D~------~~~~~~~v~n~~v~lk~~~~k~ 795 (797)
||||||+ ||+++++||||||+||++|+|.
T Consensus 600 Gyf~~D~~~~~~~~~~~~~~vfnr~v~lk~~~~~~ 634 (851)
T 2hz7_A 600 GYFWRDPVELERVDSREDALVFGRIITLKDTWGKQ 634 (851)
T ss_dssp EEEEECHHHHHCC------CEEEEEECSSCCC---
T ss_pred eEEEEccCCCccCCCCCCceEEEeecccccchhhc
Confidence 9999996 8999999999999999999984
No 3
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=5.3e-119 Score=1023.75 Aligned_cols=454 Identities=27% Similarity=0.439 Sum_probs=411.1
Q ss_pred hhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCcccCCch
Q 003764 269 EVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSD 348 (797)
Q Consensus 269 ~~~~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~~~~qSd 348 (797)
..++|+|+|||||||||||||||||||++||++||+|||+|+||||||||+|+.++|+++|+++|+|||+.||+++|||+
T Consensus 91 ~~~~g~v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDtD~~R~~~e~~~~I~edL~wLGl~wd~~~~qSd 170 (553)
T 3aii_A 91 AGVKGEVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDETVIQSD 170 (553)
T ss_dssp SSCCSCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCTTHHHHHHHHHHHHTCCCSEEEEGGG
T ss_pred CCCCCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCCCCCCccccc
Confidence 34468899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCc
Q 003764 349 YFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNM 428 (797)
Q Consensus 349 ~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~ 428 (797)
||+.|+++|++||++|+||+|+||+++|++.|+.+++|+||+++++|++.+|++|++| .+|+++||+|+++.+++.++
T Consensus 171 r~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G--~~g~~~lR~k~d~~~~n~~~ 248 (553)
T 3aii_A 171 RMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEM--KEGSAVVRVKTDLNHPNPAI 248 (553)
T ss_dssp GHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGS--CTTSCEEEECCCTTCSSGGG
T ss_pred CHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcC--CcCceEEEEEcccccCCCCC
Confidence 9999999999999999999999999999999888899999999999999999999999 46789999999999899999
Q ss_pred CccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCceeeeeeccCCCc
Q 003764 429 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNT 508 (797)
Q Consensus 429 ~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~~f~~Ln~~g~ 508 (797)
+|||+||+...+||+||++|+||||||||||||||+|||||||||.||++||++|.||+++||++.|.||||++|+.+|+
T Consensus 249 ~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG~~~P~y~H~~~L~~~g~ 328 (553)
T 3aii_A 249 RDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKMDDV 328 (553)
T ss_dssp TTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHTCCCCEEECCCCBC----
T ss_pred CCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcCCCCCeEEEeeEEecCCc
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhhhccCCceeeEe
Q 003764 509 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVL 588 (797)
Q Consensus 509 kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~ 588 (797)
|||||+++++|++|+|+||||||++||++||++||+|+||++||+++||++++..++++.|++++|+.+++.+||.|+|+
T Consensus 329 KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~~~s~~~L~~~~r~~l~~~a~R~~~V~ 408 (553)
T 3aii_A 329 ALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRSILEEEARRYFFAA 408 (553)
T ss_dssp ---CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCBCCCHHHHHHHHHHHHTTTCEEECEEE
T ss_pred eechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCccccccHHHHHHHHHHHhhccChhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEcCCCCceeeeccccCCCCCCCCCCceeEecccceEEEecCcccccCCccccCcCCCCEEEEeeeeeEEEeEe
Q 003764 589 NPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEV 668 (797)
Q Consensus 589 dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyie~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~ 668 (797)
||+||+|+|+|.. +.+++|+||+ +|++|+|+|+|+++||||++||+ + +.|+|+++|||+|+++
T Consensus 409 ~p~kv~i~n~~~~--~~~~~p~hp~---~~~~G~r~v~~~~~i~ie~~D~~-----------~-~~vrL~~~~~i~~~~~ 471 (553)
T 3aii_A 409 DPVKLEVVGLPGP--VRVERPLHPD---HPEIGNRVLELRGEVYLPGDDLG-----------E-GPLRLIDAVNVIYSGG 471 (553)
T ss_dssp SEEEEEEETCCSC--EEEEEESCTT---CGGGCEEEEEESSEEEEECTTCC-----------S-EEEEETTTEEEEEETT
T ss_pred CcEEEEEeCCCCc--eEEEecCCCC---CCcCccEEEEECCEEEEEcccCC-----------c-CceeecCEEEEEEEEE
Confidence 9999999999842 5788999998 79999999999999999999996 4 7889999999999874
Q ss_pred eecCCCCCEEEEEEEEcCCC---CCCCC-eeEEeccCCCCCCCCeeEEEEeccccCCCCCCCCccCccccCCCCCceeec
Q 003764 669 ILSDDKETILHIRAEYDPSK---KTKPK-GVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIP 744 (797)
Q Consensus 669 ~~~~~~g~v~e~~~~~~~~~---~~k~k-~~I~Wv~~~~~~~~~~~~e~r~y~~Lf~~~~p~~~~~~~~~~n~~S~~~~~ 744 (797)
. |+|+++. .+|+| ++|||||+ .+.++|++|. |++ . +.
T Consensus 472 ~------------~~~~~~~~~~~~k~k~~~i~Wv~~----~~~~~~~~~~---------~~~------------~-~~- 512 (553)
T 3aii_A 472 E------------LRYHSEGIEEARELGASMIHWVPA----ESALEAEVIM---------PDA------------S-RV- 512 (553)
T ss_dssp E------------EEEEECSHHHHHHHTCEEECCEEG----GGCEEEEEEC---------TTS------------C-EE-
T ss_pred E------------EEEeCCchhhcccCCCCEEEEccC----CCceEEEEEC---------CCC------------c-EE-
Confidence 3 6776643 25677 89999997 4578898884 321 1 33
Q ss_pred eeEeccccccCCCCCeEEEEEeeeEEEecCCCCCceeE
Q 003764 745 EAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVF 782 (797)
Q Consensus 745 ~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~v~ 782 (797)
.|++||++.++++|++|||||.||||||+++++ +||
T Consensus 513 ~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~--~~~ 548 (553)
T 3aii_A 513 RGVIEADASELEVDDVVQLERFGFARLDSAGPG--MVF 548 (553)
T ss_dssp EEEECGGGGGCCTTCEEEETTTEEEEEEECSSS--EEE
T ss_pred EEEEchhHhcCCCCCEEEEEEeEEEEEeeCCCc--EEE
Confidence 689999999999999999999999999987544 554
No 4
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=100.00 E-value=2e-75 Score=668.83 Aligned_cols=311 Identities=21% Similarity=0.251 Sum_probs=272.7
Q ss_pred HHHHHhhhhcC--CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCC
Q 003764 262 EVLDKHLEVTG--GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 339 (797)
Q Consensus 262 ~~~~~~~~~~~--g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~ 339 (797)
-.++.|.+..+ ..||||||||||||||||||||||+||++||++||+|+||||||||+|+.++|+++|+++|+|||++
T Consensus 10 g~~~~~~~~p~~~~~vrtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~ 89 (512)
T 4gri_A 10 GTLEAQTQGPGSMLSTRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLKWLGIS 89 (512)
T ss_dssp --------------CCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCHHHHHHHHHHHHHHTCC
T ss_pred cchhhcccCCCCCCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCCHHHHHHHHHHHHHcCCC
Confidence 34444444433 4699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc---------ccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhc--------cCCCCCCCCCChHHHhHHHHH
Q 003764 340 PFK---------ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFED 402 (797)
Q Consensus 340 pd~---------~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~--------~~~~~~~R~~s~ee~l~~fe~ 402 (797)
||+ +|+||+|++.|+++|++|+++|+||+|+||++|+++.|+ ++|++.||+++.++..
T Consensus 90 wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~----- 164 (512)
T 4gri_A 90 FDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVE----- 164 (512)
T ss_dssp CSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHH-----
T ss_pred CCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhh-----
Confidence 996 469999999999999999999999999999999988765 4688999999876532
Q ss_pred hhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCc----ccccccccccchhhhccCCccEEecCccccc
Q 003764 403 MRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDK----WCIYPSYDYAHCIVDSIENITHSLCTLEFET 478 (797)
Q Consensus 403 m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~----~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~ 478 (797)
.+....+++++|+|+++ .++..++|.|.|++.+..+...||. ++|+||||||||||||+|||||||||+||++
T Consensus 165 --~~~~~~~~~~~R~k~~~-~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~ 241 (512)
T 4gri_A 165 --NALIKKIKPVVRFKIPL-EGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVS 241 (512)
T ss_dssp --HHHHTTCCCEEEECCCS-SCEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGG
T ss_pred --hhhhhhccceeeecccc-cCCceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceecccccccc
Confidence 23334557899999986 4578899999999998877777774 4789999999999999999999999999999
Q ss_pred chhHHHHHHHHhCCCCCceeeeee-ccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCC
Q 003764 479 RRASYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGI 557 (797)
Q Consensus 479 ~t~~q~~L~~aLg~~~P~~~~f~~-Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~ 557 (797)
|||+|.|||++|||+.|.|.|++. ++.+|+|||||+++ .+|..+|+.||.|+||.|||+.|||
T Consensus 242 sTp~q~~l~~alg~~~P~y~H~pli~~~~g~kLSKR~~~----------------~~v~~~~~~G~lPeAl~NyLalLGw 305 (512)
T 4gri_A 242 SGPLHVLLYKAFKWKPPIYCHLPMVMGNDGQKLSKRHGS----------------TALRQFIEDGYLPEAIINYVTLLGW 305 (512)
T ss_dssp GHHHHHHHHHHHTCCCCEEEEECCCBCTTSSBCCTTTSC----------------CBHHHHHHHTCCHHHHHHHHHHSSB
T ss_pred ccHHHHHHHHHcCCCCCeEEecchhccccccccCccccc----------------ccHHHHHHcCCChHHHHHHHHHhCC
Confidence 999999999999999998888875 68899999999987 5799999999999999999999999
Q ss_pred CCCCccccHhhHHHHHHHhhhccCCceeeEeccceEEEEc
Q 003764 558 SRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN 597 (797)
Q Consensus 558 s~~~~~~~~~~Le~~ir~~~~~~~~R~~av~dp~kl~i~n 597 (797)
+..+. -++..++++++.|+...+++++++||+.||.|.|
T Consensus 306 s~~~~-~Eifs~~eli~~Fdl~~v~ks~a~fD~~KL~~~N 344 (512)
T 4gri_A 306 SYDDK-REFFSKNDLEQFFSIEKINKSPAIFDYHKLDFFN 344 (512)
T ss_dssp CSSSS-CCCCCHHHHHHHCCGGGBCSSCCBCCHHHHHHHH
T ss_pred CCccc-chhhhHHHHHHHHHhcCCCCCCccccHHHHHHHH
Confidence 98753 3567789999999999999999999999999887
No 5
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=100.00 E-value=3.8e-73 Score=645.37 Aligned_cols=294 Identities=23% Similarity=0.305 Sum_probs=264.9
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCc-ccCCchhHHH
Q 003764 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQE 352 (797)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~-~~~qSd~~~~ 352 (797)
+|||||||||||+|||||+||||+||++||++||+|+|||||||++|+.++|+++|+++|+|||+.||+ +++||+|++.
T Consensus 1 ~v~~RFAPSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dL~wLGl~wde~~~~QS~r~~~ 80 (492)
T 2cfo_A 1 TVRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDEGPYFQSDRLDL 80 (492)
T ss_dssp CCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSSSSCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHH
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCCccccchHHHHHHHHHHHHcCCCCCCCCccccCCHHH
Confidence 389999999999999999999999999999999999999999999999999999999999999999997 8999999999
Q ss_pred HHHHHHHHHHcCccccCCCCHHHHHHHhc--------cCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCC--
Q 003764 353 LYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ-- 422 (797)
Q Consensus 353 ~ye~a~~LI~~G~AY~C~cs~eel~~~r~--------~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~-- 422 (797)
|++++++|+++|+||+|+||+++|.+.|+ ++|+++||+++.+|+++ .|..|. ++++|+|++..
T Consensus 81 y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~---~~~~g~----~~~iR~k~~~~~~ 153 (492)
T 2cfo_A 81 YRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAA---FEAAGR----TPVIRFKIEDDRQ 153 (492)
T ss_dssp HHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHH---HHHTTC----CCEEEECCCTTCE
T ss_pred HHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHH---HHhCCC----CceEEEEcCCCCc
Confidence 99999999999999999999999988763 37999999999987653 455554 58999998632
Q ss_pred ------------CCCCCc-CccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHH
Q 003764 423 ------------NDNFNM-YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHA 489 (797)
Q Consensus 423 ------------~~~~~~-~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~a 489 (797)
.++..+ .|||+||... + +|.|+||||||||||||+|||||||||+||++||++|.||+++
T Consensus 154 ~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~--~-----p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~a 226 (492)
T 2cfo_A 154 IEWQDLVRGRVSWQGADLGGDMVIARAAP--R-----GEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEA 226 (492)
T ss_dssp EEEEETTTEEEEEEGGGGCSSEEEECSCC--T-----TSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHH
T ss_pred eEEEecceeeeeecccccCCCeEEEEecC--C-----CCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHH
Confidence 245577 8999999732 2 2568999999999999999999999999999999999999999
Q ss_pred hCCCCCceeeeee-ccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhh
Q 003764 490 LGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDR 568 (797)
Q Consensus 490 Lg~~~P~~~~f~~-Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~ 568 (797)
||++.|.|.|.++ +|.+|+|||||+++ .+|++||++||+|+||++||+.+||+.+....++..
T Consensus 227 lg~~~P~~~H~plil~~~g~KLSKr~g~----------------~~l~~~r~~G~~peal~~~l~~lG~s~~~~~~e~~~ 290 (492)
T 2cfo_A 227 LGATPPNFAHTPLILNSTGQKLSKRDGV----------------TSISDFRAMGYLAPALANYMTLLGWSPPEGVGELFT 290 (492)
T ss_dssp TTCCCCEEEEECCEECSSSSBCCTTSSC----------------CBHHHHHHTTCCHHHHHHHHHHTTBCCCTTTCSCCC
T ss_pred cCCCCceEEEeeeEECCCCCEecccCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCCCccccccC
Confidence 9999997777777 79999999999997 479999999999999999999999997222235667
Q ss_pred HHHHHHHhhhccCCceeeEeccceEEEEc
Q 003764 569 LEYHIREELNKTAPRTMVVLNPLKVVITN 597 (797)
Q Consensus 569 Le~~ir~~~~~~~~R~~av~dp~kl~i~n 597 (797)
++++++.|+...+++.+++|||.||.|.|
T Consensus 291 ~~e~i~~f~~~~i~~~~~~~d~~kl~~~N 319 (492)
T 2cfo_A 291 LDLAAKHFSFERINKAGARFDWDKLNWLN 319 (492)
T ss_dssp HHHHHHHCCSTTBCSSCEECCHHHHHHHH
T ss_pred HHHHHhhcChhhcCccccccCHHHHHHHH
Confidence 89999999999999999999999999888
No 6
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=100.00 E-value=4.5e-73 Score=644.14 Aligned_cols=311 Identities=20% Similarity=0.265 Sum_probs=277.0
Q ss_pred cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCc--------
Q 003764 271 TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-------- 342 (797)
Q Consensus 271 ~~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~-------- 342 (797)
++++|||||||||||+|||||+||||+||++||++||+|+|||||||++|+.++++++|+++|+|||++||+
T Consensus 3 ~~~~vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~ 82 (498)
T 2ja2_A 3 ATETVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGGPY 82 (498)
T ss_dssp SCCCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTT
T ss_pred CCCCeeEEECcCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCcccChHHHHHHHHHHHHcCCCcCCCcCcCCCC
Confidence 356799999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -ccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhc-------cCCCCCCCCCChHHHhHHHHHhhcCcccCC-ce
Q 003764 343 -ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE-------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KA 413 (797)
Q Consensus 343 -~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~-------~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g-~~ 413 (797)
+++||+|++.|+++|++|+++|+||+|+||+++|.+.|. ++|+++||+++.+|+++.+ .+| .+
T Consensus 83 ~~~~QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~--------~~g~~~ 154 (498)
T 2ja2_A 83 GPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYL--------AEGRQP 154 (498)
T ss_dssp CCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHH--------HTTCCC
T ss_pred CCeeeecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhh--------ccCCCc
Confidence 899999999999999999999999999999999988761 5799999999999876532 234 57
Q ss_pred EEEEEecCCCCCCCcCccEEEEEecCCCCCCCCccc-----ccccccccchhhhccCCccEEecCcccccchhHHHHHHH
Q 003764 414 TLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWC-----IYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLH 488 (797)
Q Consensus 414 ~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~-----~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~ 488 (797)
+||+|++ .++..+.|.|.|++.+.++.. ++|+ |+||||||||||||+|||||||||.||+++|++|.+|++
T Consensus 155 ~iR~k~~--~~~~~~~D~v~G~i~~~~~~~--~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~ 230 (498)
T 2ja2_A 155 VVRLRMP--DDDLAWNDLVRGPVTFAAGSV--PDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQ 230 (498)
T ss_dssp EEEECCC--SSCEEEEETTTEEEEECTTCS--CCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHH
T ss_pred eEEEECC--CCceEEEecccceEeeccccc--CcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHH
Confidence 9999987 567889999999998877653 4664 799999999999999999999999999999999999999
Q ss_pred Hh-----CCCCCceeeeee-ccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCc
Q 003764 489 AL-----GLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS 562 (797)
Q Consensus 489 aL-----g~~~P~~~~f~~-Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~ 562 (797)
+| |++.|.+.|++. +|.+|+|||||+++ .+|++||++||+|+||++||+.+||+..+.
T Consensus 231 aL~~~g~g~~~P~~~h~plil~~~g~KLSKR~g~----------------~~l~~~r~~G~~peAl~~~l~~lG~s~~~~ 294 (498)
T 2ja2_A 231 ALIRIGVAERIPKFAHLPTVLGEGTKKLSKRDPQ----------------SNLFAHRDRGFIPEGLLNYLALLGWSIADD 294 (498)
T ss_dssp HHHHTTSCCCCCEEEEECCEECSSSSBCCTTSGG----------------GBHHHHHHHTCCHHHHHHHHHTSSCCSCSS
T ss_pred HHHhhcCCCCCCeEEEeeeeECCCCCcccccCCc----------------ccHHHHHhCCCCHHHHHHHHHHhCCCCCcc
Confidence 99 999997666665 68999999999987 479999999999999999999999997653
Q ss_pred cccHhhHHHHHHHhhhccCCceeeEeccceEEEEc------CCCCceeeecccc
Q 003764 563 LIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKR 610 (797)
Q Consensus 563 ~~~~~~Le~~ir~~~~~~~~R~~av~dp~kl~i~n------~~~~~~~~~~~p~ 610 (797)
.++..++++++.|+...+++.+++|||.||.|.| +|.+.+.....|+
T Consensus 295 -~e~~s~~eli~~f~~~~~~~~~a~fd~~kL~~~N~~~i~~~~~~~l~~~l~~~ 347 (498)
T 2ja2_A 295 -HDLFGLDEMVAAFDVADVNSSPARFDQKKADALNAEHIRMLDVGDFTVRLRDH 347 (498)
T ss_dssp -CCCCCHHHHHHHCCGGGCCCSCEECCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred -cccCCHHHHHhhCChhhcCccccccCHHHHHHhhHHHHHhcCHHHHHHHHHHH
Confidence 2456688999999999999999999999999888 5554444444443
No 7
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=100.00 E-value=4.1e-73 Score=641.70 Aligned_cols=297 Identities=23% Similarity=0.309 Sum_probs=258.5
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCcc---------c
Q 003764 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKI---------T 344 (797)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~~---------~ 344 (797)
+|||||||||||+|||||+||||+||++||++||+|+|||||||++|+.++|+++|+++|+|||++||+. +
T Consensus 1 ~v~~RFaPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~ 80 (468)
T 1j09_A 1 MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPY 80 (468)
T ss_dssp CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCC
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCcccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCe
Confidence 3899999999999999999999999999999999999999999999999999999999999999999974 8
Q ss_pred CCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhcc--CCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCC
Q 003764 345 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREK--KMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ 422 (797)
Q Consensus 345 ~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~--~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~ 422 (797)
+||+|++.|+++|++|+++|+||+|+||+++|.+.|+. +|+++||+++.+|++. .|.+|. +++||+|++.
T Consensus 81 ~QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~---~~~~g~----~~~~R~k~~~- 152 (468)
T 1j09_A 81 RQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEE---RARRGE----PHVIRLKVPR- 152 (468)
T ss_dssp BGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHH---HHHTTC----CCEEEECCCS-
T ss_pred eccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHH---HHhcCC----CceEEEecCC-
Confidence 99999999999999999999999999999999988753 7999999999998764 355553 5899999873
Q ss_pred CCCCCcCccEEEEEecCCCCCCCCcc-----cccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCce
Q 003764 423 NDNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYV 497 (797)
Q Consensus 423 ~~~~~~~D~V~~r~~~~~h~~~gd~~-----~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~ 497 (797)
.+...+.|.|.+++.++... .+ +| +|+||||||||||||+|||||||||.||++|+++|.||+++||++.|.+
T Consensus 153 ~~~~~~~D~~~G~~~~~~~~-~~-D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p~~ 230 (468)
T 1j09_A 153 PGTTEVKDELRGVVVYDNQE-IP-DVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRF 230 (468)
T ss_dssp SCEEEEEETTTEEEEEEGGG-SC-CCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEE
T ss_pred CCceEEEeccceeEeecccC-CC-CeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCCeE
Confidence 22334444444444332221 11 12 3699999999999999999999999999999999999999999999976
Q ss_pred eeeee-ccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHh
Q 003764 498 WEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREE 576 (797)
Q Consensus 498 ~~f~~-Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~ 576 (797)
.|++. +|.+|+|||||+++ .+|++||++||+|+||+|||+.+||+..+. .++..++++++.|
T Consensus 231 ~h~~li~~~~g~klSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~~~~~~-~~~~~~~el~~~f 293 (468)
T 1j09_A 231 YHMPLLRNPDKTKISKRKSH----------------TSLDWYKAEGFLPEALRNYLCLMGFSMPDG-REIFTLEEFIQAF 293 (468)
T ss_dssp EEECCCBCTTSCBCCTTTSC----------------CBHHHHHHTTCCHHHHHHHHHHHSCCCTTC-CSCCCHHHHHHHC
T ss_pred EEeeeeeCCCCCccccccch----------------hhHHHHHHCCCCHHHHHHHHHHhccCCccc-ccCCCHHHHHhhC
Confidence 66665 59999999999997 479999999999999999999999997643 2345678999999
Q ss_pred hhccCCceeeEeccceEEEEc
Q 003764 577 LNKTAPRTMVVLNPLKVVITN 597 (797)
Q Consensus 577 ~~~~~~R~~av~dp~kl~i~n 597 (797)
+...+++.+++|||.||.|.|
T Consensus 294 ~~~~~~~~~~~~d~~kl~~~N 314 (468)
T 1j09_A 294 TWERVSLGGPVFDLEKLRWMN 314 (468)
T ss_dssp CGGGCCCSCCBCCHHHHHHHH
T ss_pred ChhhcCccccccChHHhhhhc
Confidence 999999999999999999888
No 8
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=100.00 E-value=5.6e-72 Score=632.43 Aligned_cols=301 Identities=23% Similarity=0.329 Sum_probs=251.5
Q ss_pred CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCc-ccCCchhH
Q 003764 272 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYF 350 (797)
Q Consensus 272 ~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~-~~~qSd~~ 350 (797)
.++|||||||||||+|||||+|+|++||++||++||+|+|||||||++|+.++|+++|+++|+|||+.||+ +++||+|+
T Consensus 23 ~~~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dl~wlGl~~d~~~~~qS~r~ 102 (490)
T 4g6z_A 23 TRPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMAWLGLDYDEGPYYQMQRM 102 (490)
T ss_dssp -CCCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCH
T ss_pred CCCceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCCCcccccHHHHHHHHHHHHHcCCCCCCCCcccccCH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999997 68999999
Q ss_pred HHHHHHHHHHHHcCccccCCCCHHHHHHHhc--------cCCCCCCCCCChHHHhHHHHHhhcCcccCC-ceEEEEEecC
Q 003764 351 QELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQDM 421 (797)
Q Consensus 351 ~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~--------~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g-~~~lR~K~d~ 421 (797)
+.|++++++|+++|+||+|+||+++|++.|+ ++|+++||+++.++. . ...+| ++++|||++.
T Consensus 103 ~~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~--------~-~~~~g~~~~~R~k~~~ 173 (490)
T 4g6z_A 103 DRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVL--------P-EPPAGVAPVLRFRNPL 173 (490)
T ss_dssp HHHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCC--------C-CCCTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhh--------h-hhhcCCCceEEEecCC
Confidence 9999999999999999999999999988764 469999999985421 1 12234 5899999752
Q ss_pred --------------CCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHH
Q 003764 422 --------------QNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLL 487 (797)
Q Consensus 422 --------------~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~ 487 (797)
..++..++|+|++|. +|+||||||||||||+|||||||||+||++|||+|.+||
T Consensus 174 ~~~~~~~D~i~G~~~~~~~~~~D~Vl~R~------------DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~ 241 (490)
T 4g6z_A 174 TGTVAWDDAVKGRVEISNEELDDLVVARP------------DGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINIL 241 (490)
T ss_dssp SSEEEEEETTTEEEEEEGGGCCCCEEECT------------TSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHH
T ss_pred CCcEEEEEeeeeeeeeccccCCCeEEEee------------CCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHH
Confidence 112334555565554 369999999999999999999999999999999999999
Q ss_pred HHhCCCCCceeeeee-ccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccH
Q 003764 488 HALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRL 566 (797)
Q Consensus 488 ~aLg~~~P~~~~f~~-Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~ 566 (797)
++|||+.|.|.|.+. ++.+|+|||||+++ .||++||++||+|+||+|||+.+||+..+. ++
T Consensus 242 ~aLG~~~P~f~HlpLi~~~~g~KLSKR~g~----------------~sl~~~r~~G~~peal~n~l~~lG~s~~~~--e~ 303 (490)
T 4g6z_A 242 RALGGEVPVYAHLPTVLNEQGEKMSKRHGA----------------MSVMGYRDAGYLPEAVLNYLARLGWSHGDA--EI 303 (490)
T ss_dssp HHTTCCCCEEEEECCEECTTSSBCCTTTTC----------------CBHHHHHHTTCCHHHHHHHHHTSSBCCTTC--CC
T ss_pred HHcCCCCCeEEEecceeCCCCCcccCCCCC----------------cCHHHHHHCCCCHHHHHHHHHHhCCCCCCc--cc
Confidence 999999997666665 58899999999986 589999999999999999999999997654 55
Q ss_pred hhHHHHHHHhhhccCCceeeEeccceEEEEc------CCCCceeeeccccC
Q 003764 567 DRLEYHIREELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKRW 611 (797)
Q Consensus 567 ~~Le~~ir~~~~~~~~R~~av~dp~kl~i~n------~~~~~~~~~~~p~~ 611 (797)
.+++++++.|+...+++.+++||+.||.|.| ++.+.+.....|++
T Consensus 304 ~s~~eli~~F~~~~~~~~~~~fd~~KL~~~N~~~i~~~~~~~l~~~~~~~l 354 (490)
T 4g6z_A 304 FTREQFVEWFDLEHLGKSPAQYDHNKLNWLNNHYIKEADDARLAGLAKPFF 354 (490)
T ss_dssp CCHHHHHHHCCGGGBCSSCEECCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCHHHHHhhCCHhhCCCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6789999999999999999999999999888 55544444444443
No 9
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=100.00 E-value=6.7e-70 Score=617.81 Aligned_cols=289 Identities=22% Similarity=0.322 Sum_probs=254.5
Q ss_pred cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCc--------
Q 003764 271 TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-------- 342 (797)
Q Consensus 271 ~~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~-------- 342 (797)
+.++|||||||||||+|||||+|+||+||++||++||+|+|||||||++|+.++++++|+++|+|||++||+
T Consensus 22 ~~~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG~~ 101 (488)
T 3afh_A 22 CFELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDF 101 (488)
T ss_dssp ---CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHTTCCCSBBTTTBCTT
T ss_pred cCCCceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeCCcccccHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 445799999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -ccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecC
Q 003764 343 -ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDM 421 (797)
Q Consensus 343 -~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~ 421 (797)
+++||+|++.|++++++|+++|+||+|+||+++|++...++|++. + +.+..|. ++++|+|++
T Consensus 102 gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~------~------~~~~~G~----~~~iR~k~~- 164 (488)
T 3afh_A 102 GPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYP------H------EYKEKGH----PVTIKFKVL- 164 (488)
T ss_dssp CCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCC------H------HHHHTTC----CEEEEECCC-
T ss_pred CCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCch------h------hHHhcCC----CceEEEECC-
Confidence 489999999999999999999999999999999987544556654 1 1233332 589999987
Q ss_pred CCCCCCcCccEEEEEecCCCCCCCCcc-----cccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCc
Q 003764 422 QNDNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPY 496 (797)
Q Consensus 422 ~~~~~~~~D~V~~r~~~~~h~~~gd~~-----~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~ 496 (797)
.++..+.|.|.|++.+..+.. ++| +|+||||||||||||+|||||||||+||++|||+|.||+++||++.|.
T Consensus 165 -~~~~~~~D~v~G~~~~~~~~~--~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG~~~P~ 241 (488)
T 3afh_A 165 -PGKTSFEDLLKGYMEFDNSTL--EDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPV 241 (488)
T ss_dssp -SSEEEEEETTTEEEEEEGGGS--CCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCE
T ss_pred -CCceeEEeccceeEeecCCCC--CCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcCCCCCe
Confidence 456778888888887654432 345 489999999999999999999999999999999999999999999997
Q ss_pred eeeeee-ccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHH
Q 003764 497 VWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 575 (797)
Q Consensus 497 ~~~f~~-Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~ 575 (797)
+.|++. +|.+|+|||||+++ .+|++||++||+|+||+|||+.+||+..+. ++..++++++.
T Consensus 242 f~H~pli~~~~g~KLSKR~g~----------------~~l~~~r~~G~~peal~n~l~~lG~s~~~~--e~~s~~e~i~~ 303 (488)
T 3afh_A 242 FMHIPLILGSDRTPLSKRHGA----------------TSVEHFRREGILSRALMNYLALLGWRVEGD--EIFTIEEKLQS 303 (488)
T ss_dssp EEEECCEECTTSSBCCTTTSC----------------CBHHHHHHHTCCHHHHHHHHHHTTCCCSSC--SCCCHHHHGGG
T ss_pred EEEEeeeeCCCCCcccCcCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCccc--ccCCHHHHHhh
Confidence 666665 49999999999997 479999999999999999999999997654 56678999999
Q ss_pred hhhccCCceeeEeccceEEEEc
Q 003764 576 ELNKTAPRTMVVLNPLKVVITN 597 (797)
Q Consensus 576 ~~~~~~~R~~av~dp~kl~i~n 597 (797)
|+...++|.+++|||.||.|.|
T Consensus 304 f~~~~i~~~~~~fd~~kl~~~N 325 (488)
T 3afh_A 304 FDPKDISNKGVIFDYQKLEWVN 325 (488)
T ss_dssp CCGGGSCSSCEECCHHHHHHHH
T ss_pred CChhhcCccccccChHHhhhcc
Confidence 9999999999999999999887
No 10
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=100.00 E-value=7.7e-67 Score=604.64 Aligned_cols=300 Identities=21% Similarity=0.309 Sum_probs=257.6
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCc---------c
Q 003764 273 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---------I 343 (797)
Q Consensus 273 g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~---------~ 343 (797)
++|+|||||||||+|||||+|+|++||++||+|||+|+|||||||++|+.++++++|+++|+|||+.||+ +
T Consensus 128 ~~v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~I~~dL~wlGl~~D~~~~~gG~~gp 207 (592)
T 3al0_C 128 ELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGP 207 (592)
T ss_dssp CCCEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCSSSCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCcChhhccHHHHHHHHHHHHHcCCCCCCCCCcCCCCCC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999997 4
Q ss_pred cCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCC
Q 003764 344 TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQN 423 (797)
Q Consensus 344 ~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~ 423 (797)
++||+|++.|++++++|+++|+||+|+||+++|++.+.++|++. + +.+..|. ++++|+|++ .
T Consensus 208 ~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~------~------~~~~~g~----~~~iR~k~~--~ 269 (592)
T 3al0_C 208 YRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYP------H------EYKEKGH----PVTIKFKVL--P 269 (592)
T ss_dssp CBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCC------H------HHHHTTC----CEEEEECCC--S
T ss_pred eeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcH------H------HHhhcCC----CceEEEECC--C
Confidence 79999999999999999999999999999999876533445543 1 1233343 589999987 4
Q ss_pred CCCCcCccEEEEEecCCCCCCCCcc-----cccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCcee
Q 003764 424 DNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVW 498 (797)
Q Consensus 424 ~~~~~~D~V~~r~~~~~h~~~gd~~-----~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~ 498 (797)
++..+.|.+.|++.+..+. -++| +|+||||||||||||+|||||||||.||++||++|.||+++||++.|.|.
T Consensus 270 ~~~~~~D~v~G~~~~~~~~--~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~P~~~ 347 (592)
T 3al0_C 270 GKTSFEDLLKGYMEFDNST--LEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFM 347 (592)
T ss_dssp SCCEECCTTTCSEECCSSS--SCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCCBCC
T ss_pred CCceeeecccceeeecccc--CCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhCCCCCeEE
Confidence 5567777777777655432 1344 46999999999999999999999999999999999999999999999766
Q ss_pred eeee-ccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhh
Q 003764 499 EYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 577 (797)
Q Consensus 499 ~f~~-Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~ 577 (797)
|++. +|.+|+|||||+++ .+|++||++||+|+||+|||+.+||+..+. ++..++++++.|+
T Consensus 348 hlpli~~~~g~KLSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~s~~~~--e~~s~~e~i~~f~ 409 (592)
T 3al0_C 348 HIPLILGSDRTPLSKRHGA----------------TSVEHFRREGILSRALMNYLALLGWRVEGD--EIFTIEEKLQSFD 409 (592)
T ss_dssp EECCCBCTTSSBCCTTTCS----------------SBHHHHHHTTCCHHHHHHHHTTTTBCCCSC--SCCCTTTTGGGCC
T ss_pred EeeeeeCCCCCcccccCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCccc--ccCCHHHHHhhCC
Confidence 6665 49999999999997 479999999999999999999999997654 5566788999999
Q ss_pred hccCCceeeEeccceEEEEc------CCCCceeeecccc
Q 003764 578 NKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKR 610 (797)
Q Consensus 578 ~~~~~R~~av~dp~kl~i~n------~~~~~~~~~~~p~ 610 (797)
...++|.+++|||.||.|.| ++.+.+.....|+
T Consensus 410 ~~~i~~~~~~fd~~kl~~~N~~~i~~~~~~~l~~~~~~~ 448 (592)
T 3al0_C 410 PKDISNKGVIFDYQKLEWVNGKHMRRIDLEDLKREFIEW 448 (592)
T ss_dssp TTSBCSSCCBCCHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred hhhcCcccceeCHHHHhhhhHHHhhcCCHHHHHHHHHHH
Confidence 99999999999999999888 4554444444443
No 11
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-65 Score=581.48 Aligned_cols=308 Identities=23% Similarity=0.326 Sum_probs=261.4
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCc---------ccC
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---------ITY 345 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~---------~~~ 345 (797)
||+||||||||+|||||+|+|++||++||.+||+|+|||||||++|+.++++++|+++|+|||++||+ +++
T Consensus 14 v~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD~~r~~~~~~~~I~~~l~wlGl~~de~p~~gg~~g~y~ 93 (481)
T 2o5r_A 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVGGDHGPYR 93 (481)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSSCCSGGGHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCB
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCccccHHHHHHHHHHHHHHcCCCCCCCcccCCCCCcee
Confidence 79999999999999999999999999999999999999999999999999999999999999999996 589
Q ss_pred CchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhc--------cCCCCC--CCCCChHHHhHHHHHhhcCcccCCceEE
Q 003764 346 TSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSP--WRDRPIAESLKLFEDMRNGRIEEGKATL 415 (797)
Q Consensus 346 qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~--------~~~~~~--~R~~s~ee~l~~fe~m~~G~~~~g~~~l 415 (797)
||+|++.|+++|++|+++|+||+|+||++++...|+ +.|++. ||+++.+|+.+ .|..|. +++|
T Consensus 94 QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~---~~~~G~----~~~i 166 (481)
T 2o5r_A 94 QSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRRE---YEEKGL----RPAV 166 (481)
T ss_dssp GGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHH---HHHTTC----CCEE
T ss_pred eeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHH---HHhcCC----cceE
Confidence 999999999999999999999999999999988763 368888 99999988654 355554 5799
Q ss_pred EEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-----cccccccccchhhhccCCccEEecCcccccchhHHHHHHHHh
Q 003764 416 RMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 490 (797)
Q Consensus 416 R~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~-----~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aL 490 (797)
|+|++. +...+.|.+.+++.+.... .| +| +|+||||||||||||+|||||||||.||++|+++|.||+++|
T Consensus 167 R~k~~~--~~~~~~D~~~G~~~~~~~~-~~-D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~aL 242 (481)
T 2o5r_A 167 FFKMPR--KDYVLNDVVKGEVVFKTGA-IG-DFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAF 242 (481)
T ss_dssp EECCCS--SCEEEEETTTEEEEECTTS-SC-BEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHT
T ss_pred EEEcCC--CceEEEecccceeEecccc-CC-CeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHHHc
Confidence 999763 2233444444444333221 11 22 369999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeee-ccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhH
Q 003764 491 GLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRL 569 (797)
Q Consensus 491 g~~~P~~~~f~~-Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~L 569 (797)
|++.|.+.|++. ++.+|+|||||+++ .+|++|+++||+|+||++|+..+||+.... -++..+
T Consensus 243 G~~~p~~~H~plil~~~G~KLSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~s~~~~-~e~~~~ 305 (481)
T 2o5r_A 243 EKAPPVFAHVSTILGPDGKKLSKRHGA----------------TSVEAFRDMGYLPEALVNYLALLGWSHPEG-KELLTL 305 (481)
T ss_dssp TCCCCEEEEECCEECTTSSBCCGGGSC----------------CBHHHHHHHTCCHHHHHHHHHTSSBCCTTC-CCCCCH
T ss_pred CCCCCeEEEEeeEECCCCCcccCcCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCCcc-cccCCH
Confidence 999997777775 68999999999997 479999999999999999999999997432 134567
Q ss_pred HHHHHHhhhccCCceeeEeccceEEEEc------CCCCceeeecccc
Q 003764 570 EYHIREELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKR 610 (797)
Q Consensus 570 e~~ir~~~~~~~~R~~av~dp~kl~i~n------~~~~~~~~~~~p~ 610 (797)
+++++.|+...+++.+++||+.|+.+.| +|.+.+.....|+
T Consensus 306 ~e~i~~f~l~~~~~~~~~fd~~kl~~~n~~~i~~~~~~~l~~~~~~~ 352 (481)
T 2o5r_A 306 EELISSFSLDRLSPNPAIFDPQKLKWMNGYYLRNMPIEKLAELAKPF 352 (481)
T ss_dssp HHHHHHCCGGGBCSSCEECCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHhCChhhCCccCcccChHHhhhhCHHHHHhcCHHHHHHHHHHH
Confidence 8999999999999999999999998877 5554443334443
No 12
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=100.00 E-value=2e-63 Score=534.07 Aligned_cols=267 Identities=19% Similarity=0.210 Sum_probs=216.8
Q ss_pred CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCchhchHHHHHHHHHHHHHcCCCCCc-ccCCchhH
Q 003764 272 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYF 350 (797)
Q Consensus 272 ~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp~re~~e~~~~I~e~L~wLGl~pd~-~~~qSd~~ 350 (797)
.++|+|||||||||+|||||+|+||+||++||++||+|+|||||||++|+.++|+++|+++|+|||+.||+ +++||+|+
T Consensus 3 ~~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDtD~~R~~~~~~~~I~~dL~~LGl~~D~~~~~qSer~ 82 (298)
T 1nzj_A 3 DTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRH 82 (298)
T ss_dssp -CCCEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCCCSSCCEEGGGCH
T ss_pred CCCeEEEECcCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecCCchhhHHHHHHHHHHHHHHcCCCCCCCCeeeeCCH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999997 89999999
Q ss_pred HHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCC--------
Q 003764 351 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ-------- 422 (797)
Q Consensus 351 ~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~-------- 422 (797)
+.|++++++|+++|+||+|+||+++|++... .|++.||+++.+ | ...++|+|++..
T Consensus 83 ~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~-~Y~g~cr~~~~~-----------g----~~~~~R~r~~~~~~~f~D~~ 146 (298)
T 1nzj_A 83 DAYREALAWLHEQGLSYYCTCTRARIQSIGG-IYDGHCRVLHHG-----------P----DNAAVRIRQQHPVTQFTDQL 146 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCHHHHHHTTS-SCCCTTTTTCCC-----------S----TTCEEEECCSSCCCEEEETT
T ss_pred HHHHHHHHHHHHcCCcccCcCCHHHHHHcCC-CCCCccccCCcC-----------C----CCCcEEEecCCcccceehhh
Confidence 9999999999999999999999999987643 799999987653 1 246899987621
Q ss_pred -----CC-CCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCCCCc
Q 003764 423 -----ND-NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPY 496 (797)
Q Consensus 423 -----~~-~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~ 496 (797)
.. +..+.|+|+||. +|+|||||||||||++|||||||||.||++|+++|.+|+++||++.|.
T Consensus 147 ~G~~~~~~~~~~~D~VL~R~------------dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~p~ 214 (298)
T 1nzj_A 147 RGIIHADEKLAREDFIIHRR------------DGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPD 214 (298)
T ss_dssp TEEEECCHHHHHSCCEEECT------------TSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCE
T ss_pred CcccccCcccCCCCEEEECC------------CCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCCCe
Confidence 00 124566666663 369999999999999999999999999999999999999999999999
Q ss_pred eeeeeec-cCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCc--cccHh-hHHHH
Q 003764 497 VWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS--LIRLD-RLEYH 572 (797)
Q Consensus 497 ~~~f~~L-n~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~--~~~~~-~Le~~ 572 (797)
|+|++++ |.+|+|||||+++..|++ .+|+. ++.+|+..+||+.... .++.+ .|+++
T Consensus 215 ~~H~pll~~~~g~KLSKR~g~~~v~~------~~~~~--------------~~~~~l~~lG~~~~~~~~~~~~~~~l~~~ 274 (298)
T 1nzj_A 215 YIHLPLALNPQGAKLSKQNHAPALPK------GDPRP--------------VLIAALQFLGQQAEAHWQDFSVEQILQSA 274 (298)
T ss_dssp EEEECBCCC-------------CCCS------SCCHH--------------HHHHHHHHTTCCCCSCGGGSCHHHHHHHH
T ss_pred EEEeeeeECCCCCcccccCCccChhc------CCccH--------------HHHHHHHHcCCCCCcccccCCHHHHHHHH
Confidence 9999886 999999999999987765 24443 3667777777776542 34443 47899
Q ss_pred HHHhhhccCCceee
Q 003764 573 IREELNKTAPRTMV 586 (797)
Q Consensus 573 ir~~~~~~~~R~~a 586 (797)
++.|....+++.+.
T Consensus 275 ~~~f~~~~~~~~~~ 288 (298)
T 1nzj_A 275 VKNWRLTAVPESAI 288 (298)
T ss_dssp HHTCCGGGSCCCSB
T ss_pred HHhCCHhhCCCCCC
Confidence 99999999999774
No 13
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-55 Score=438.57 Aligned_cols=181 Identities=29% Similarity=0.500 Sum_probs=176.2
Q ss_pred hhHHHHHHHhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCCCCcCchhHHHHHHhcCCCC
Q 003764 9 KSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHRPTLLLYIVSSKIK 88 (797)
Q Consensus 9 ~~~~~~~f~~iGL~e~kaket~KN~kls~~L~~ii~~a~~~~~~dk~~g~ll~~lat~~~~~~~~~~~~l~~~I~~g~ik 88 (797)
.+++++||++|||+|+||+||+||++++++|..+|++++...+||+++|+|||+|||+++++..+||++|++||++|+|+
T Consensus 4 ~~~l~~lf~~iGL~e~kaket~kN~kls~~L~~~i~ea~~~~~~dk~~g~LLy~latk~k~~~~~~r~~l~~~I~~gklk 83 (187)
T 3tl4_X 4 VEELTQLFSQVGFEDKKVKEIVKNKKVSDSLYKLIKETPSDYQWNKSTRALVHNLASFVKGTDLPKSELIVNGIINGDLK 83 (187)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTTSHHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHTTSCC
T ss_pred hHHHHHHHHHcCCChhHHHHHHhCHHHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhccCccchhHHHHHHHHHhccCC
Confidence 37899999999999999999999999999999999999987789999999999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccccchhhhHHHHHh--hCCCC
Q 003764 89 TPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRK--RLPWA 166 (797)
Q Consensus 89 s~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~k~~~~~~ry~~n~g~ll~~vr~--~LkWA 166 (797)
|++||+||++||+++ .+++|+++||++|||||+||+|||+++|++||++|+++|+++||+ |+|+||++||+ .||||
T Consensus 84 t~~Qv~AAl~yl~~~-~~~id~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~i~~~RY~-~~g~ll~~vr~~p~LkWA 161 (187)
T 3tl4_X 84 TSLQVDAAFKYVKAN-GEASTKMGMNENSGVGIEITEDQVRNYVMQYIQENKERILTERYK-LVPGIFADVKNLKELKWA 161 (187)
T ss_dssp SHHHHHHHHHHHHHH-GGGCCHHHHHHTTTTTCCCCHHHHHHHHHHHHHHTHHHHHHHGGG-GHHHHHHHHHTCGGGTTS
T ss_pred cHHHHHHHHHHHHhC-CCCCCHHHHHHHCCCCeEeCHHHHHHHHHHHHHHhHHHHHHhccc-cHHHHHHHHhcccCCCCC
Confidence 999999999999988 489999999999999999999999999999999999999999999 99999999999 79999
Q ss_pred ChhhHHHHHHHHHHHhcCCCchhhh
Q 003764 167 DPKIVKQLIDARMYELLGERTAADI 191 (797)
Q Consensus 167 d~k~vK~~vd~~~~~llgpk~~~d~ 191 (797)
||+.||++||++|+++|||||++|+
T Consensus 162 d~~~vK~~vD~~~l~lLGPKte~D~ 186 (187)
T 3tl4_X 162 DPRSFKPIIDQEVLKLLGPKDERDL 186 (187)
T ss_dssp CTTSHHHHHHHHHHHHHCSCCGGGC
T ss_pred CHHHHHHHHHHHHHHHcCCcccccc
Confidence 9999999999999999999999985
No 14
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.95 E-value=8e-29 Score=284.74 Aligned_cols=277 Identities=14% Similarity=0.098 Sum_probs=174.8
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHH-----HHcCCEEEEEeecCCchhch--------------------------
Q 003764 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLA-----KERGGYCYLRYDDTNPEAEK-------------------------- 322 (797)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~~~A-----r~~~G~~iLRidDtDp~re~-------------------------- 322 (797)
.++..-+|||||++||||+|++++++++| ++++|+|++||||||+.|..
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 46666699999999999999999998775 57899999999999955433
Q ss_pred ----HHHHHHHHHHHHHcCCCCCcccCCch-hHH-HHHHHHHHHHHcC-ccccCCCCHHHHH--------HHhccCCCCC
Q 003764 323 ----KEYIDHIEEIVQWMGWEPFKITYTSD-YFQ-ELYELAVELIRRG-HAYVDHQTPEEIK--------EYREKKMNSP 387 (797)
Q Consensus 323 ----~e~~~~I~e~L~wLGl~pd~~~~qSd-~~~-~~ye~a~~LI~~G-~AY~C~cs~eel~--------~~r~~~~~~~ 387 (797)
..+.+.|+++|+|||+.||.. +||+ |.+ .|.+++++|+++| ++|.|.+....+. -.+..+|...
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~~D~~-~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~~~~~~~~~~~~ 179 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIEVDLL-YASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPE 179 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCCEEE-EHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCTTCCSEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEE-echhhccchHHHHHHHHHHHchHHHHHHHHhhccccccccccCCceeccccchh
Confidence 459999999999999998877 9999 888 8899999999999 6665542111100 0000123334
Q ss_pred CCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccE--EEEEecCCCCCCCCcccccccccccchhhhccC
Q 003764 388 WRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI--AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIE 465 (797)
Q Consensus 388 ~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V--~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~ 465 (797)
|+..+.+ . .... ..++|++. ..+...+.|++ .+|.. |.-+ +++|+|+|+++|| .|
T Consensus 180 ~~~~~~~--~---------~~~~-~~~~~f~~--~~g~~~~~d~~~G~g~~~------w~~d-~~~~~~~l~~~vd--~~ 236 (523)
T 1irx_A 180 HRREAEI--I---------EWDG-GWKVKYKC--PEGHEGWVDIRSGNVKLR------WRVD-WPMRWSHFGVDFE--PA 236 (523)
T ss_dssp TCCEECE--E---------EECS-SSCEEECC--SSSCCCEECTTSSCEEEC------HHHH-HHHHHHHSCCCBC--CE
T ss_pred hCCcccc--c---------ccCC-CCceeeee--cCCCccccCCcCCCCCCC------CCcc-hHhhHHHcCCCCc--CC
Confidence 4432211 0 0001 12345543 11222222332 11110 1111 2567788888776 88
Q ss_pred CccEEecCcccccchhHHHHHH-HHhCCCCCceeeeeeccCC--CceecccccccccccCccCCCCCcchhhHHHHHHcC
Q 003764 466 NITHSLCTLEFETRRASYFWLL-HALGLYQPYVWEYSRLNVS--NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRG 542 (797)
Q Consensus 466 gITHvlRG~E~~~~t~~q~~L~-~aLg~~~P~~~~f~~Ln~~--g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG 542 (797)
|++|+.+|. |.+.+.+++ .+||+..|.+.|++++..+ |.|||||+|+ ..++..+++.
T Consensus 237 G~Dh~~~h~----s~~~~~~i~~~alG~~~p~~~h~~~i~~~g~g~KmSKs~Gn---------------~i~~~~~~~~- 296 (523)
T 1irx_A 237 GKDHLVAGS----SYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGN---------------VILLSDLYEV- 296 (523)
T ss_dssp EHHHHSTTS----HHHHHHHHHHHHHCCCCCBCCEECCEEESCC---------C---------------CCCHHHHHTT-
T ss_pred CcCccCCCc----chhhHHHHHHHHhCCCCCeEEEEEEEEeCCCCCCCCCcCCC---------------CCCHHHHHHH-
Confidence 888887761 122223343 7999988877777887655 9999999997 3589999998
Q ss_pred CChHHHHHHHHHhCCCCCCccccHh-hHHHHHHHhhhccCCceeeEeccc--eEEEEc
Q 003764 543 VTSTSINAFVQGIGISRSDSLIRLD-RLEYHIREELNKTAPRTMVVLNPL--KVVITN 597 (797)
Q Consensus 543 ~~PeAI~~fl~~lG~s~~~~~~~~~-~Le~~ir~~~~~~~~R~~av~dp~--kl~i~n 597 (797)
|.|+|+++||++.|+.. +..++++ .|+++.+.+. ++.+..+.+++. |+.|.|
T Consensus 297 ~~pdalR~~l~~~~~~~-~~~fs~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~n 351 (523)
T 1irx_A 297 LEPGLVRFIYARHRPNK-EIKIDLGLGILNLYDEFE--KVERIYFGVEGGKGDDEELR 351 (523)
T ss_dssp SCHHHHHHHHHSSCTTS-CEEECCSTTHHHHHHHHH--HHHHHHTTSCC-----CHHH
T ss_pred cCHHHHHHHHHhcCCCC-CceeCcchhHHHHHHHHH--HHHHHHhcccccchhhhhhc
Confidence 99999999999988864 4567777 7888877663 344444455554 455655
No 15
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.92 E-value=1.2e-24 Score=246.61 Aligned_cols=253 Identities=15% Similarity=0.137 Sum_probs=188.5
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCch---h----------chHHHHHHHHHHHHHcCCCC-
Q 003764 280 PPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPE---A----------EKKEYIDHIEEIVQWMGWEP- 340 (797)
Q Consensus 280 aPsPtG~LHIGharaal~n~~~Ar~-----~~G~~iLRidDtDp~---r----------e~~e~~~~I~e~L~wLGl~p- 340 (797)
+|+|+|++||||+|++++.+.+||. |+..|+.+++|+|.+ + ....|.+.|.++++|||+.+
T Consensus 29 gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~~LgI~~~ 108 (461)
T 1li5_A 29 GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRP 108 (461)
T ss_dssp CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 7888899999999999999999983 667999999999964 1 14588999999999999996
Q ss_pred CcccCCchhHHHHHHHHHHHHHcCccccC------CCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceE
Q 003764 341 FKITYTSDYFQELYELAVELIRRGHAYVD------HQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 414 (797)
Q Consensus 341 d~~~~qSd~~~~~ye~a~~LI~~G~AY~C------~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~ 414 (797)
|..+++|+|.+.+.+.+++|+++|+||.+ +|..+ + ..|...|. +++ ++|..|.
T Consensus 109 d~~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~----~--~~yg~lsg-~~~-------~~l~~g~------- 167 (461)
T 1li5_A 109 DMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPT----D--PTYGVLSR-QDL-------DQLQAGA------- 167 (461)
T ss_dssp SBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGG----C--TTTTTTTT-C-----------------------
T ss_pred cccccccchHHHHHHHHHHHHHCCCEEEecCCCEEEeccc----c--cccccccC-CCH-------HHhhcCC-------
Confidence 77789999999999999999999999987 66543 1 23444443 222 2333332
Q ss_pred EEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccchh-hhccCCccEEec--Ccc----cccchhHHHHH
Q 003764 415 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHCI-VDSIENITHSLC--TLE----FETRRASYFWL 486 (797)
Q Consensus 415 lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~-~~~PtY~fA~~V-DD~~~gITHvlR--G~E----~~~~t~~q~~L 486 (797)
|+..+ ..+.+..||++|+.....+|.|.++| .++|+||.+|++ .....|.++.|+ |.| |+.+.+.|...
T Consensus 168 -rv~~~--~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl~fpH~~~~~aq~~a 244 (461)
T 1li5_A 168 -RVDVV--DDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTC 244 (461)
T ss_dssp ----------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHHHHHHHH
T ss_pred -cccch--hcccCccceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCccCchHHHHHHHHHHH
Confidence 33222 22345589999998777788888899 789999999975 334446788888 888 55555555432
Q ss_pred HHHhCCCCCceeee-eeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCcccc
Q 003764 487 LHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 565 (797)
Q Consensus 487 ~~aLg~~~P~~~~f-~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~ 565 (797)
++|.+.|.+|.+ ++++++|+|||||+|+ +.+++.+.++ |.|+++|.|+++.. ..++..++
T Consensus 245 --~~g~~~~~~~~h~g~v~~~G~KMSKS~GN---------------~v~~~dll~~-~g~dalR~~ll~~~-~~~~~~fs 305 (461)
T 1li5_A 245 --AHDGQYVNYWMHSGMVMVDREKMSKSLGN---------------FFTVRDVLKY-YDAETVRYFLMSGH-YRSQLNYS 305 (461)
T ss_dssp --HSSSCCEEEECCBCCEEETTBCCCGGGTC---------------CCBHHHHHTT-SCHHHHHHHHHSSC-TTSCEEEC
T ss_pred --hcCCCCCcEEEEeeEEEECCeEccccCCC---------------ccChhHHhhh-CCHHHHHHHHHcCC-cCCCCCCC
Confidence 258877878866 8899999999999998 4688899886 99999999999744 34556788
Q ss_pred HhhHHHHHHH
Q 003764 566 LDRLEYHIRE 575 (797)
Q Consensus 566 ~~~Le~~ir~ 575 (797)
++.|.++.+.
T Consensus 306 ~~~l~~~~~~ 315 (461)
T 1li5_A 306 EENLKQARAA 315 (461)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888776443
No 16
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.92 E-value=4.1e-25 Score=249.44 Aligned_cols=252 Identities=14% Similarity=0.136 Sum_probs=183.9
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCch-------------hchHHHHHHHHHHHHHcCCCCC
Q 003764 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWEPF 341 (797)
Q Consensus 280 aPsPtG~LHIGharaal~n~~~Ar-----~~~G~~iLRidDtDp~-------------re~~e~~~~I~e~L~wLGl~pd 341 (797)
+|+|+|++||||+|++++.+.++| .|+..|+.++||+|.+ .....|.+.+.+++++||+.++
T Consensus 32 GPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~LgI~~d 111 (462)
T 3tqo_A 32 GMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRVLSP 111 (462)
T ss_dssp CCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 899999999999999999888887 3667999999999964 2246899999999999999986
Q ss_pred c-ccCCchhHHHHHHHHHHHHHcCcccc------CCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceE
Q 003764 342 K-ITYTSDYFQELYELAVELIRRGHAYV------DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 414 (797)
Q Consensus 342 ~-~~~qSd~~~~~ye~a~~LI~~G~AY~------C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~ 414 (797)
. .+++|+|.+.+.+.+++|+++|+||. ++|.+.. +.|+..++ ++.+ +|..|.
T Consensus 112 ~~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~------~~yg~Ls~-~~~~-------~~~~g~------- 170 (462)
T 3tqo_A 112 DQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRF------KDYGKLSH-RHLD-------ELQAGA------- 170 (462)
T ss_dssp SBCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTC------TTTTTTTT-CSCC--------------------
T ss_pred ccccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccc------cccccccC-CChH-------HhhccC-------
Confidence 4 56999999999999999999999993 5665431 23443332 2222 233332
Q ss_pred EEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccchhhhc-cCC--ccEEecCcc----cccchhHHHHH
Q 003764 415 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHCIVDS-IEN--ITHSLCTLE----FETRRASYFWL 486 (797)
Q Consensus 415 lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~-~~~PtY~fA~~VDD~-~~g--ITHvlRG~E----~~~~t~~q~~L 486 (797)
|+..+ ..+.+..||++|+...+.+|.|.++| .|+|+||+.|++... ..| ++-..-|.| |+.|...|..
T Consensus 171 -r~~~~--~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~FpHheneiaqs~- 246 (462)
T 3tqo_A 171 -RVEVS--DSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPHHENEIAQSE- 246 (462)
T ss_dssp ---------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGTTTHHHHHHHHHH-
T ss_pred -ccccc--cccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEccccccccHHHHhHHHHHH-
Confidence 43322 34566789999999999999999999 899999999975321 112 222223333 4555555532
Q ss_pred HHHhCCCCCceeee-eeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCcccc
Q 003764 487 LHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 565 (797)
Q Consensus 487 ~~aLg~~~P~~~~f-~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~ 565 (797)
-+.|.+.+.+|.| ++++.+|+|||||+|+ +.|++.+... |.|+++|.|+++.++.. +..++
T Consensus 247 -a~~g~p~~~~w~H~g~v~~~G~KMSKSlGN---------------~i~~~dll~~-~g~dalR~~lls~~yr~-~l~fs 308 (462)
T 3tqo_A 247 -AGEEKPFVKLWMHAGLLEINKEKMSKSLGN---------------IISIREALKE-SDVEVLRYFLLSGHYRN-PLSYS 308 (462)
T ss_dssp -HHHSSCCEEEEEEECCEEETTEECCTTTTC---------------CCBHHHHHHH-SCHHHHHHHHHHSCTTS-CEEEC
T ss_pred -HHcCCCcceEEEEccEEecCCcCccccCCC---------------cccHHHHHhh-cChHHhhhhhccCCCCC-CcCcC
Confidence 2347677888887 6789999999999998 4688888875 99999999999877654 45688
Q ss_pred HhhHHHHHH
Q 003764 566 LDRLEYHIR 574 (797)
Q Consensus 566 ~~~Le~~ir 574 (797)
.+.|+++.+
T Consensus 309 ~~~l~~a~~ 317 (462)
T 3tqo_A 309 KENLENGRL 317 (462)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877643
No 17
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.88 E-value=1.7e-22 Score=226.10 Aligned_cols=261 Identities=15% Similarity=0.108 Sum_probs=175.0
Q ss_pred EeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCchh-------------chHHHHHHHHHHHHHcCCC
Q 003764 278 RFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEA-------------EKKEYIDHIEEIVQWMGWE 339 (797)
Q Consensus 278 RFaPsPtG~LHIGharaal~n~~~Ar~-----~~G~~iLRidDtDp~r-------------e~~e~~~~I~e~L~wLGl~ 339 (797)
-..|+|+|++||||+|++++.+.+||. |+..|+..+||.|..- ....+.+.|.+++++||+.
T Consensus 44 ~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~Lgi~ 123 (414)
T 3c8z_A 44 VCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALRVL 123 (414)
T ss_dssp ECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred eCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 448999999999999999999999884 7789999999999542 2467889999999999999
Q ss_pred -CCcccCCchhHHHHHHHHHHHHHcCccccCCCCHH-----HHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCce
Q 003764 340 -PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-----EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKA 413 (797)
Q Consensus 340 -pd~~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~e-----el~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~ 413 (797)
+|..++.|+|.+.+.+..++|+++|++|.+.+..+ ++.++ ..|...+ .+..++.+..+. .+ .++.
T Consensus 124 ~~d~~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~~--~~~g~l~-~~~~~~~~~~~~---~~---~~~~ 194 (414)
T 3c8z_A 124 PPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADAT--AQFGYES-GYDRDTMLTLFA---ER---GGDP 194 (414)
T ss_dssp CCSEEEEGGGCHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTSS--TTTTTTT-CCCHHHHHHHHH---HT---TCCT
T ss_pred CCcceecccchHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchhh--hhhHhhc-CCCHHHHHHHHh---hc---cccc
Confidence 88878889999999999999999999998765300 01111 1111111 122332221110 00 0110
Q ss_pred EEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcc-cccccccccc----------hhhhccCCccEEecCcccccchhH
Q 003764 414 TLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAH----------CIVDSIENITHSLCTLEFETRRAS 482 (797)
Q Consensus 414 ~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~-~~~PtY~fA~----------~VDD~~~gITHvlRG~E~~~~t~~ 482 (797)
+ ...+....|+++|++..+.+|.|.++| .|+|.||..| ++|.|.+|++|+. -|+.+.+.
T Consensus 195 ------~-~~~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D~~~---~H~~~~~a 264 (414)
T 3c8z_A 195 ------D-RPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIF---PHHEYSAA 264 (414)
T ss_dssp ------T-CTTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEEEEEEGGGTT---THHHHHHH
T ss_pred ------c-ccccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCCCceEEEecccccc---HHHHHHHH
Confidence 0 122345689999999877788887788 6899999887 4666666666654 25555555
Q ss_pred HHHHHHHhCC-CCCceeee-eeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCC
Q 003764 483 YFWLLHALGL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 560 (797)
Q Consensus 483 q~~L~~aLg~-~~P~~~~f-~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~ 560 (797)
|... +.|. +.+.+|-+ ++++.+|+|||||+|+ ..++..+.++||.|+++|.|+++ +-...
T Consensus 265 ~~~a--~~g~~~~~~~~~h~g~v~~~G~KMSKS~GN---------------~v~~~~ll~~g~g~D~lR~~ll~-~~~~~ 326 (414)
T 3c8z_A 265 HAES--VTGERRFARHYVHTGMIGWDGHKMSKSRGN---------------LVLVSQLRAQGVDPSAIRLGLFS-GHYRE 326 (414)
T ss_dssp HHHH--HHCCSCSEEEEEEECCBC----------------------------CBHHHHHHTTCCHHHHHHHHHT-SCTTS
T ss_pred HHHH--hcCCCCcCeEEEEcCEEecCCeEcccccCC---------------cCCHHHHhhccCCcchheeEEEe-cCcCC
Confidence 4321 2376 44556766 7999999999999998 46899999999999999999998 54455
Q ss_pred CccccHhhHHHHHHH
Q 003764 561 DSLIRLDRLEYHIRE 575 (797)
Q Consensus 561 ~~~~~~~~Le~~ir~ 575 (797)
+..++++.|.++.+.
T Consensus 327 d~~fs~~~l~~~~~~ 341 (414)
T 3c8z_A 327 DRFWSNEVLDEANAR 341 (414)
T ss_dssp CBCCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH
Confidence 667888888877654
No 18
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.88 E-value=3.5e-22 Score=226.91 Aligned_cols=252 Identities=15% Similarity=0.099 Sum_probs=166.3
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecC----------Cch-------------hchHHHHHHHHH
Q 003764 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDT----------NPE-------------AEKKEYIDHIEE 331 (797)
Q Consensus 280 aPsPtG~LHIGharaal~n~~~Ar-----~~~G~~iLRidDt----------Dp~-------------re~~e~~~~I~e 331 (797)
+|+|+|++||||||++++.+.++| .|...|+..|+|+ |.+ .....|.+.+.+
T Consensus 49 gPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~~~~~f~~ 128 (501)
T 3sp1_A 49 GPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTEAFFN 128 (501)
T ss_dssp CCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHHHHHHHHH
T ss_pred CCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 688889999999999999888876 4677899999999 432 124678999999
Q ss_pred HHHHcCCCCC-cccCCchhHHHHHHHHHHHHHcCcccc-----CCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhc
Q 003764 332 IVQWMGWEPF-KITYTSDYFQELYELAVELIRRGHAYV-----DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRN 405 (797)
Q Consensus 332 ~L~wLGl~pd-~~~~qSd~~~~~ye~a~~LI~~G~AY~-----C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~ 405 (797)
+++.||+.++ ..+..++|.+.+.+..++|+++|+||. .||... + +.|+...+ ++. -++|..
T Consensus 129 d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~----f--~~yG~ls~-~~~------~~~~~~ 195 (501)
T 3sp1_A 129 DCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC----F--KSYGEMAG-IDL------IDKDMT 195 (501)
T ss_dssp HHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG----C--TTTTTTTC----------------
T ss_pred HHHHcCCCCCCcccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc----c--CCccccCC-CCh------hhhhcc
Confidence 9999999876 356789999999999999999999994 344332 1 23432211 111 024544
Q ss_pred CcccCCceEEEEEecCCCCCCCcCccEEEEE--ec-CCCCCCCCcc-cccccccccchh----------hhccCCccEEe
Q 003764 406 GRIEEGKATLRMKQDMQNDNFNMYDLIAYRI--KF-TPHPHAGDKW-CIYPSYDYAHCI----------VDSIENITHSL 471 (797)
Q Consensus 406 G~~~~g~~~lR~K~d~~~~~~~~~D~V~~r~--~~-~~h~~~gd~~-~~~PtY~fA~~V----------DD~~~gITHvl 471 (797)
|. |.. ....+.+..||++|+. .. ...|.|.++| .|+|+||..|+. |-|..|+.+++
T Consensus 196 g~--------r~~--~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEcsam~~~~lg~~~DIH~gG~DLif 265 (501)
T 3sp1_A 196 LP--------RVD--VDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLGGVDHIG 265 (501)
T ss_dssp ------------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHHHHHHHHHHHHTTTCCCEEEEEGGGTT
T ss_pred CC--------ccC--cccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCchHHHHHHHHHHcCCCceEEeecccccc
Confidence 43 322 2234567799999976 22 3446799999 799999999864 33444444433
Q ss_pred cCcccccchhHHHHHHHHhCCCCCceeee-eeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHH
Q 003764 472 CTLEFETRRASYFWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINA 550 (797)
Q Consensus 472 RG~E~~~~t~~q~~L~~aLg~~~P~~~~f-~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~ 550 (797)
-|+.+.+.|.. -+.|-+.+.+|-| ++++++|+|||||.|+ +.|++.+.++||.|+++|.
T Consensus 266 ---pHheneiAqs~--a~~g~~~~~~w~H~g~v~~~G~KMSKSlGN---------------~it~~dll~~gyg~d~lR~ 325 (501)
T 3sp1_A 266 ---VHHINEIAIAE--CFLNKKWCDVFVHGEFLIMDYNKMSKSRGN---------------FITVKDLEDQNFSPLDFRY 325 (501)
T ss_dssp ---THHHHHHHHHH--HHHTSCCCSEEEEECCEECC-------------------------CCCHHHHHHTTCCHHHHHH
T ss_pred ---chHHHHHHHHH--HccCCCCCeEEEEeeeEeeCCeEccccCCC---------------cCCHHHHHhcCCCHHHHHH
Confidence 34555555532 1235567888988 8999999999999998 5789999999999999999
Q ss_pred HHHHhCCCCCCccccHhhHHHHHHH
Q 003764 551 FVQGIGISRSDSLIRLDRLEYHIRE 575 (797)
Q Consensus 551 fl~~lG~s~~~~~~~~~~Le~~ir~ 575 (797)
||++..+. ++..++.+.|+++.+.
T Consensus 326 ~lls~~yr-~~l~fs~~~l~~a~~~ 349 (501)
T 3sp1_A 326 LCLTSHYR-NQLKFSLDNLQASKIA 349 (501)
T ss_dssp HHHTSCTT-SCEECCHHHHHHHHHH
T ss_pred HHHhccCC-CCCccCHHHHHHHHHh
Confidence 99987665 4457888888877665
No 19
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.81 E-value=2.4e-19 Score=204.45 Aligned_cols=267 Identities=15% Similarity=0.085 Sum_probs=172.7
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC----------------chhchHHHHHHHHHHHHH
Q 003764 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQW 335 (797)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~~~Ar~--~~G~~iLRidDtD----------------p~re~~e~~~~I~e~L~w 335 (797)
-+++.-+|.|||+|||||+|++++.+.+||. ..|..++++.++| |.....++.+.|.++++|
T Consensus 7 ~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 86 (497)
T 2csx_A 7 FYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWEF 86 (497)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3788889999999999999999999999994 5999999999998 666778899999999999
Q ss_pred cCCCCCcccCCch--hHHHHHHHHHHHHHcCccccC-----CCCHHHHHHHhccCCC-CCCC--CCChHHHhHHHHHhhc
Q 003764 336 MGWEPFKITYTSD--YFQELYELAVELIRRGHAYVD-----HQTPEEIKEYREKKMN-SPWR--DRPIAESLKLFEDMRN 405 (797)
Q Consensus 336 LGl~pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~C-----~cs~eel~~~r~~~~~-~~~R--~~s~ee~l~~fe~m~~ 405 (797)
||+.+|..+++|+ |.+.+.+...+|+++|++|.| .|...+..-....... +.|. ..+++. +.
T Consensus 87 lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~-------~~- 158 (497)
T 2csx_A 87 LKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEY-------IK- 158 (497)
T ss_dssp TTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC----------------------------------------C-
T ss_pred hCCcCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeE-------Ee-
Confidence 9999998778888 988899999999999999987 4655422110000000 1121 111110 00
Q ss_pred CcccCCceEEEEEecC-------------C--CC-----------CCCcCccEEEEEecCCCCCCCCcccccccccc---
Q 003764 406 GRIEEGKATLRMKQDM-------------Q--ND-----------NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDY--- 456 (797)
Q Consensus 406 G~~~~g~~~lR~K~d~-------------~--~~-----------~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~f--- 456 (797)
...+.++++. . .+ +..++|+.+-|.... .-||.+..+.|+|++
T Consensus 159 ------~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~--~~WG~~iP~~~~~~i~vW 230 (497)
T 2csx_A 159 ------EPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSR--VKWGIPVPFDPEHTIYVW 230 (497)
T ss_dssp ------CEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTT--CCSSEEETTEEEEEECSH
T ss_pred ------cCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCC--CCCceecCCCCCceEEEe
Confidence 0112222110 0 00 013468777773111 013321111224443
Q ss_pred -------cchhhh---ccCCccEEecCccccc----chhHHHHHHHHhCCCCCc-eeeeeeccCCCceeccccccccccc
Q 003764 457 -------AHCIVD---SIENITHSLCTLEFET----RRASYFWLLHALGLYQPY-VWEYSRLNVSNTVMSKRKLNFLVTN 521 (797)
Q Consensus 457 -------A~~VDD---~~~gITHvlRG~E~~~----~t~~q~~L~~aLg~~~P~-~~~f~~Ln~~g~kLSKRk~~~~v~~ 521 (797)
.+++.| ....+++.+.|.|++. ..+. ...++|+..|. +++++++..+|+|||||+|+
T Consensus 231 ~ds~~~~~s~~~~~~~~~~p~di~~~G~D~~~~H~~~~~a---~l~~~g~~~~~~~~~~G~v~~~G~KMSKS~GN----- 302 (497)
T 2csx_A 231 FDALFNYISALEDKVEIYWPADLHLVGKDILRFHTVYWPA---FLMSLGYELPKKVFAHGWWTVEGKKMSKTLGN----- 302 (497)
T ss_dssp HHHHTHHHHTTTTTHHHHCSCSCEEEEGGGHHHHHTHHHH---HHHHHTCCCCSCEEEECCEESSSSBCCTTTTC-----
T ss_pred cccchhhcccCCCcchhhCCceEEEeecchhHhHHHHHHH---HHHHcCCCCCcEEEECcEEEeCCceeCCcCCC-----
Confidence 334444 2336777788998875 2222 23567987777 44678888899999999998
Q ss_pred CccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHH
Q 003764 522 KYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 575 (797)
Q Consensus 522 g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~ 575 (797)
..++..+.+ +|.++|+|.|++..+....+..++++.+.+..+.
T Consensus 303 ----------~i~~~dli~-~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~ 345 (497)
T 2csx_A 303 ----------VVDPYEVVQ-EYGLDEVRYFLLREVPFGQDGDFSKKAILNRING 345 (497)
T ss_dssp ----------CCCHHHHHH-HHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHH
T ss_pred ----------CCCHHHHHH-HCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHH
Confidence 346777776 4999999999998766666678888888776543
No 20
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.75 E-value=1.4e-17 Score=190.01 Aligned_cols=274 Identities=15% Similarity=0.046 Sum_probs=169.7
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCC----------------chhchHHHHHHHHHHHHHc
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQWM 336 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar--~~~G~~iLRidDtD----------------p~re~~e~~~~I~e~L~wL 336 (797)
+++--+|.|||+|||||+|++++.+.+|| .+.|.-++++.++| |.....++.+.|.+++++|
T Consensus 6 ~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 85 (500)
T 2d5b_A 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLL 85 (500)
T ss_dssp EEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 56667789999999999999999999999 45999999999998 5556678999999999999
Q ss_pred CCCCCcccCCch--hHHHHHHHHHHHHHcCccccCC-----CCHHHHH-HHhccCCCCCCC--CCChHHH--------h-
Q 003764 337 GWEPFKITYTSD--YFQELYELAVELIRRGHAYVDH-----QTPEEIK-EYREKKMNSPWR--DRPIAES--------L- 397 (797)
Q Consensus 337 Gl~pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~C~-----cs~eel~-~~r~~~~~~~~R--~~s~ee~--------l- 397 (797)
|+.+|..+++++ |.+.+.+..++|.++|++|.+. |...+-. ..+ .-..+.|. ..+++.. +
T Consensus 86 gi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~-~l~~g~c~~~~~~v~~~~~~~wf~~l~ 164 (500)
T 2d5b_A 86 GIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEK-ELVEGLCPIHGRPVERRKEGNYFFRME 164 (500)
T ss_dssp TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTT-TSBTTBCTTTCSBCEEEEEEEEEECGG
T ss_pred CCcCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCch-hccCCcCCCCCCeeeEEecCceEEEcH
Confidence 999998777887 8888889999999999999762 2211000 000 00011121 1111000 0
Q ss_pred ----HHHHHhhcCcccCCceEEE--EEecC-CCCCCCcCccEEEEEecCCCCCCCCccc------c------------cc
Q 003764 398 ----KLFEDMRNGRIEEGKATLR--MKQDM-QNDNFNMYDLIAYRIKFTPHPHAGDKWC------I------------YP 452 (797)
Q Consensus 398 ----~~fe~m~~G~~~~g~~~lR--~K~d~-~~~~~~~~D~V~~r~~~~~h~~~gd~~~------~------------~P 452 (797)
.+.+....+. .++.- .+..+ ..-...++|+.+-|.... .-||.+.. + .-
T Consensus 165 ~~~~~l~~~~~~~~----~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~--~~WG~piP~~~~~v~~vWfds~~~y~~~~ 238 (500)
T 2d5b_A 165 KYRPWLQEYIQENP----DLIRPEGYRNEVLAMLAEPIGDLSISRPKSR--VPWGIPLPWDENHVTFVWFDALLNYVSAL 238 (500)
T ss_dssp GGHHHHHHHHHTCT----TSEESHHHHHHHHHHHTSCCCCEECEEETTT--CCSSCEETTEEEEEECHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHhCC----CeeCCHHHHHHHHHHHhcCCCCeeccccccc--ccCccccCCCCCCeeEEccccchhhHHHc
Confidence 0000000000 00000 00000 000023468887772110 01332110 0 01
Q ss_pred cccccchhhhccCCccEEecCcccccchhHH-H--HHHHHhCCCCCce-eeeeeccC-CCceecccccccccccCccCCC
Q 003764 453 SYDYAHCIVDSIENITHSLCTLEFETRRASY-F--WLLHALGLYQPYV-WEYSRLNV-SNTVMSKRKLNFLVTNKYVDGW 527 (797)
Q Consensus 453 tY~fA~~VDD~~~gITHvlRG~E~~~~t~~q-~--~L~~aLg~~~P~~-~~f~~Ln~-~g~kLSKRk~~~~v~~g~v~gW 527 (797)
.|+..|..++.. +.+..+-|.|++. +.+ . .+..++|+..|.. ++++++.. +|+|||||+|+
T Consensus 239 g~~~~~~~~~~~-p~di~~~G~D~~~--fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~G~KMSKS~GN----------- 304 (500)
T 2d5b_A 239 DYPEGEAYRTFW-PHAWHLIGKDILK--PHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGN----------- 304 (500)
T ss_dssp TTTTCHHHHHHG-GGEEEEEEGGGHH--HHHTHHHHHHHHHTCCCCSEEEEECCEECTTSSCCCTTTTC-----------
T ss_pred CCCCCchHHHcC-CCeEEEEeechhh--hHHHHHHHHHHHcCCCCCcEEEECceEEeCCCCcccccCCC-----------
Confidence 355444333333 5567778888875 222 1 2345779877774 46788888 99999999998
Q ss_pred CCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHH
Q 003764 528 DDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 574 (797)
Q Consensus 528 dDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir 574 (797)
..++..+.+. |.++|+|.|++..+....+..++++.+.+...
T Consensus 305 ----~i~p~d~i~~-~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~ 346 (500)
T 2d5b_A 305 ----VVDPFALLEK-YGRDALRYYLLREIPYGQDTPVSEEALRTRYE 346 (500)
T ss_dssp ----CCCHHHHHHH-HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHH
T ss_pred ----CCCHHHHHHh-cCcHHHHHHHHhcCCcccCCCCCHHHHHHHHH
Confidence 3467777764 89999999999866555667888888876654
No 21
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.4e-16 Score=174.02 Aligned_cols=194 Identities=14% Similarity=0.084 Sum_probs=136.1
Q ss_pred HHHHHHhhhhcCC--eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec----CCchhch--------HHHH
Q 003764 261 KEVLDKHLEVTGG--NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----TNPEAEK--------KEYI 326 (797)
Q Consensus 261 ~~~~~~~~~~~~g--~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidD----tDp~re~--------~e~~ 326 (797)
++.|++.|+..+. .|.++|.| ||.|||||++.|+.+|.+++ .|+.++++|.| |+..+.. ..+.
T Consensus 26 ~e~L~~~L~~~~~p~~vy~G~~P--TG~LHlG~~~~al~~~~~~q-~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~ 102 (394)
T 2dlc_X 26 PQIIKDVLEVQKRHLKLYWGTAP--TGRPHCGYFVPMTKLADFLK-AGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYE 102 (394)
T ss_dssp HHHHHHHHHTSCSCCEEEEEECC--CSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCeEEEEEeCC--CCCccHHHHHHHHHHHHHHH-cCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHH
Confidence 6778888876433 58899988 79999999999999999998 89999999999 7532211 1245
Q ss_pred HHHHHHHHHcCCCCCc--ccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhh
Q 003764 327 DHIEEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMR 404 (797)
Q Consensus 327 ~~I~e~L~wLGl~pd~--~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~ 404 (797)
..|...+.|+|++|++ +.+||+++. .-+++..++ .|.|+||..++.+... + +
T Consensus 103 ~~i~~~l~a~Gldp~k~~i~~qS~~~~-~~~~~~~~~----~l~~~~t~~~l~r~~~-------------~-------~- 156 (394)
T 2dlc_X 103 LTIKAILRSINVPIEKLKFVVGSSYQL-TPDYTMDIF----RLSNIVSQNDAKRAGA-------------D-------V- 156 (394)
T ss_dssp HHHHHHHHHTTCCCTTCEEEETHHHHT-SHHHHHHHH----HHHTTSCHHHHHHHTT-------------T-------T-
T ss_pred HHHHHHHHHcCCChhHcEEEeCchhcc-hHHHHHHHH----HHhCcCcHHHHhcccH-------------h-------h-
Confidence 6778889999999986 789999853 123333333 6899999998875410 0 0
Q ss_pred cCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHH
Q 003764 405 NGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYF 484 (797)
Q Consensus 405 ~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~ 484 (797)
. |.. .+. -.+.-+|..--+.|..+++++|+++|.|...+...+.
T Consensus 157 ---~-------r~~-----~~~---------------------~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~~~~~l~r 200 (394)
T 2dlc_X 157 ---V-------KQV-----ANP---------------------LLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAE 200 (394)
T ss_dssp ---S-------CCC-----SSC---------------------CTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHH
T ss_pred ---h-------ccc-----CCc---------------------cceeeechhHhhccHhhhCCCEEecCccHHHHHHHHH
Confidence 0 000 000 0124455556667778899999999999999999999
Q ss_pred HHHHHhCCCCCceeeeeec-cCC-Cceeccccccccc
Q 003764 485 WLLHALGLYQPYVWEYSRL-NVS-NTVMSKRKLNFLV 519 (797)
Q Consensus 485 ~L~~aLg~~~P~~~~f~~L-n~~-g~kLSKRk~~~~v 519 (797)
.|++.+|+..|...+.+.+ +.+ |+|||||.++..|
T Consensus 201 dl~~r~~~~~p~~l~~pll~gl~~G~KMSKS~~ns~I 237 (394)
T 2dlc_X 201 ENLPSLGYKKRAHLMNPMVPGLAQGGKMSASDPNSKI 237 (394)
T ss_dssp HHGGGGTCCCCEEEEECCCCCCC----------CCSC
T ss_pred HHHHHcCCCCCEEEecccccCCCCCCcCCCCCCCCEE
Confidence 9999999988987777664 678 9999999886433
No 22
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.64 E-value=1.4e-15 Score=177.27 Aligned_cols=297 Identities=15% Similarity=0.080 Sum_probs=186.9
Q ss_pred CCccceecCcHHHHHHhhhhc--C----CeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCC-
Q 003764 251 DGSVLICCNTKEVLDKHLEVT--G----GNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTN- 317 (797)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~--~----g~v~tRF-aPsPtG~LHIGharaal~n~~~Ar-----~~~G~~iLRidDtD- 317 (797)
+|++...-+...+...-+... . |+|+.=| .|+|||++||||+|++++.+.+|| +|...++-.|+|.+
T Consensus 75 ggfiN~~l~~~~~~~~~~~~~~~~~~~~g~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~ 154 (592)
T 1iq0_A 75 GGYLNFRLRTEALLREALRPKAPFPRRPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGR 154 (592)
T ss_dssp TTEEEEEECHHHHHHHHHSCCCCCCCEEEEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSH
T ss_pred CCEEEEEECHHHHHHHHHHHHHhcCcccCeEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcch
Confidence 466666666554555444431 1 2566666 899999999999999999888887 34445666667764
Q ss_pred -----------------c----------------------------------------hhchHHHHHHHHHHHHHcCCCC
Q 003764 318 -----------------P----------------------------------------EAEKKEYIDHIEEIVQWMGWEP 340 (797)
Q Consensus 318 -----------------p----------------------------------------~re~~e~~~~I~e~L~wLGl~p 340 (797)
+ .+....+.+.|.++++|||+.+
T Consensus 155 q~~~li~~~~~~g~d~~~~~~~d~~~g~~y~~~~~~~~~~~~~~~a~~~~~~~e~g~~~~~~~~~~~~~~~~~~~LgI~~ 234 (592)
T 1iq0_A 155 QAAETLFALRHYGLTWDGKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARY 234 (592)
T ss_dssp HHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhCCcccCCCCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHcCCEe
Confidence 1 1123356778899999999999
Q ss_pred CcccCCchh--HHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCC-CCCCCChHHHhHHHHHhhcCccc-CCceEEE
Q 003764 341 FKITYTSDY--FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNS-PWRDRPIAESLKLFEDMRNGRIE-EGKATLR 416 (797)
Q Consensus 341 d~~~~qSd~--~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~-~~R~~s~ee~l~~fe~m~~G~~~-~g~~~lR 416 (797)
|...+.|++ .+.+.+.+++|.++|++|.|.-. .+++ .|-..+. .|... -+..+++
T Consensus 235 D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g----------~~~G~~~~~~~~-----------~g~~~~l~~~vi~ 293 (592)
T 1iq0_A 235 DLLVWESDIVRAGLLQKALALLEQSPHVFRPREG----------KYAGALVMDASP-----------VIPGLEDPFFVLL 293 (592)
T ss_dssp SEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSS----------TTTTCEEEECTT-----------TSCSCSCCEEEEE
T ss_pred EEeccCCcccccchHHHHHHHHHHCCCcccCccc----------CcCCCEEEechh-----------cCCCCCCCceEEE
Confidence 987788877 55777889999999999987211 1111 1111110 01110 0113333
Q ss_pred EEecCCCCCCCcCcc--EEE--------EEecCCCCCCCCcccccccccccchhhhccCCccEE--ecCcccccchhHHH
Q 003764 417 MKQDMQNDNFNMYDL--IAY--------RIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHS--LCTLEFETRRASYF 484 (797)
Q Consensus 417 ~K~d~~~~~~~~~D~--V~~--------r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHv--lRG~E~~~~t~~q~ 484 (797)
|-| .......+|+ ++| |... .|.++| +.|.|+..| +.-...+.+|+ |.|.+|..+.+++.
T Consensus 294 -ksd-G~~~Y~~~D~a~~~~Kl~l~~~~~~~~----~~~~p~-~r~~w~~~g-~~~~~~~~~~~iyV~g~~h~~~~~~~~ 365 (592)
T 1iq0_A 294 -RSN-GTATYYAKDIAFQFWKMGILEGLRFRP----YENPYY-PGLRTSAPE-GEAYTPKAEETINVVDVRQSHPQALVR 365 (592)
T ss_dssp -CTT-SCBCHHHHHHHHHHHHTTSSCCCEEEE----CCCSSC-TTCEEEEEE-EEECCCCCSEEEEEEESSSCCCHHHHH
T ss_pred -ecC-CceEEecchHHHHHHHhhhhhhhhhhh----hhcCcc-hhhcccccC-cccCCCCCCEEEEEEeccHHHHHHHHH
Confidence 211 0111223454 445 3321 122234 367777443 33344467776 78999999999999
Q ss_pred HHHHHhCCCC-Ccee-eee--eccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCC
Q 003764 485 WLLHALGLYQ-PYVW-EYS--RLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 560 (797)
Q Consensus 485 ~L~~aLg~~~-P~~~-~f~--~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~ 560 (797)
.++.+||+.. +..| |++ .++.+|.|||||+|+ ..++..|++.|+ ++..+++...+..-+
T Consensus 366 ~~~~alG~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn---------------~v~l~dll~~~~--~~~~~~~~~~~~~~~ 428 (592)
T 1iq0_A 366 AALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGL---------------AVSVDEVLEEAT--RRARAIVEEKNPDHP 428 (592)
T ss_dssp HHHHHTTCHHHHTTEEEEEECCEEETTBCSCC-------------------CCBHHHHHHHHH--HHHHHHHHHHCTTCS
T ss_pred HHHHHcCCCCCCCcEEEEEeeEEEcCCCcccCCCCC---------------ccCHHHHHHHHH--HHHHHHHHhhCCCCC
Confidence 9999999865 3334 554 488899999999998 357899999887 677788877765322
Q ss_pred CccccHhhHH-----HHHHHhhhccCCceeeEeccceEEEEc
Q 003764 561 DSLIRLDRLE-----YHIREELNKTAPRTMVVLNPLKVVITN 597 (797)
Q Consensus 561 ~~~~~~~~Le-----~~ir~~~~~~~~R~~av~dp~kl~i~n 597 (797)
+. +.+. .++|-|+....++....||..++...+
T Consensus 429 ~~----e~~a~~vg~~aiRyf~L~~~~~~~~~Fd~d~~~~~~ 466 (592)
T 1iq0_A 429 DK----EEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFE 466 (592)
T ss_dssp CH----HHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHCSS
T ss_pred cH----HHHHHhhcHHHHHHHHHhcCCCCCCeecHHHHHHHh
Confidence 21 2333 367888888888888888887765443
No 23
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.57 E-value=5.9e-14 Score=161.68 Aligned_cols=95 Identities=17% Similarity=0.205 Sum_probs=80.9
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCc-------------hhchHHHHHHHHHHHHHc
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNP-------------EAEKKEYIDHIEEIVQWM 336 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar-----~~~G~~iLRidDtDp-------------~re~~e~~~~I~e~L~wL 336 (797)
++|.-.|.|||+|||||+|++++.+.+|| +++..++..+||.+. ......+.+.|.+++++|
T Consensus 28 ~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 107 (536)
T 4dlp_A 28 YITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVL 107 (536)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 78888999999999999999999999988 355678888888653 344668899999999999
Q ss_pred CCCCCcccCCch--hHHHHHHHHHHHHHcCccccC
Q 003764 337 GWEPFKITYTSD--YFQELYELAVELIRRGHAYVD 369 (797)
Q Consensus 337 Gl~pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~C 369 (797)
|+.+|..++.++ |.+.+.+..++|+++|++|.+
T Consensus 108 gi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~ 142 (536)
T 4dlp_A 108 NSSNDDYIRTSEERHYKASQAIWQAMVANGDIYKG 142 (536)
T ss_dssp TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCcceeCCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence 999997655664 888888999999999999964
No 24
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.57 E-value=1.3e-13 Score=159.74 Aligned_cols=277 Identities=13% Similarity=0.062 Sum_probs=158.5
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCC---EEEEEeecCC-------------chhchHHHHHHHHHHHHHc
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGG---YCYLRYDDTN-------------PEAEKKEYIDHIEEIVQWM 336 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar--~~~G---~~iLRidDtD-------------p~re~~e~~~~I~e~L~wL 336 (797)
+++--+|.|||+|||||+|++++.+.+|| ...| .|+..+||.+ |......+.+.|.+++++|
T Consensus 21 ~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 100 (560)
T 3h99_A 21 LVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGF 100 (560)
T ss_dssp EEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHc
Confidence 77888899999999999999999999998 3444 5666666443 4455678899999999999
Q ss_pred CCCCCcccCCc--hhHHHHHHHHHHHHHcCccc-------cCCCCHHHHHHH--hc--c------CCCCC---CCC-CCh
Q 003764 337 GWEPFKITYTS--DYFQELYELAVELIRRGHAY-------VDHQTPEEIKEY--RE--K------KMNSP---WRD-RPI 393 (797)
Q Consensus 337 Gl~pd~~~~qS--d~~~~~ye~a~~LI~~G~AY-------~C~cs~eel~~~--r~--~------~~~~~---~R~-~s~ 393 (797)
|+.+|..++.+ .|.+...+...+|.++|++| +|.....-+... .+ + .+... |.. ...
T Consensus 101 gi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce~cg~~~~~ 180 (560)
T 3h99_A 101 NISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSP 180 (560)
T ss_dssp TCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCTTTCCBCCG
T ss_pred CCCCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchhhhccccCCh
Confidence 99999765444 55555667788999999998 332111100000 00 0 00000 110 000
Q ss_pred HHHhHHHHHhhcCccc--CCceEEEEEecCCC----------------C-------CCCcCccEEEEEecC-CCCCCCCc
Q 003764 394 AESLKLFEDMRNGRIE--EGKATLRMKQDMQN----------------D-------NFNMYDLIAYRIKFT-PHPHAGDK 447 (797)
Q Consensus 394 ee~l~~fe~m~~G~~~--~g~~~lR~K~d~~~----------------~-------~~~~~D~V~~r~~~~-~h~~~gd~ 447 (797)
.+-.. -.-.+.|..- ..+-.+.++.+.-. . ...+.|+.+=|-... +++..+++
T Consensus 181 ~~l~~-~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~~ 259 (560)
T 3h99_A 181 TELIE-PKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAP 259 (560)
T ss_dssp GGCEE-EEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCT
T ss_pred hhhcC-CccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCCCC
Confidence 00000 0000000000 00111222211000 0 013577777775422 22221111
Q ss_pred ------cc-ccccccccchh------------------hhccCCccEEecCccccc-chhHHHHHHHHhCCCCCce-eee
Q 003764 448 ------WC-IYPSYDYAHCI------------------VDSIENITHSLCTLEFET-RRASYFWLLHALGLYQPYV-WEY 500 (797)
Q Consensus 448 ------~~-~~PtY~fA~~V------------------DD~~~gITHvlRG~E~~~-~t~~q~~L~~aLg~~~P~~-~~f 500 (797)
|- .-..| -.++ .|....+.|++ |.|++. ++..+-.++.++|+..|.. +.+
T Consensus 260 ~~viyvW~da~~~y--~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~-G~D~~~fh~~~~~a~l~~~g~~~p~~v~~h 336 (560)
T 3h99_A 260 GKYFYVWLDAPIGL--MGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFI-GKDIVYFLSLFWPAMLEGSNFRKPSNLFVH 336 (560)
T ss_dssp TEEECHHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEE-EGGGHHHHHTHHHHHHHHTTBCCCSEEEEE
T ss_pred CceEEeCcccchhH--HHHHHHHhhccCChhhHHHhCcCCCCceeEEEe-ccccchhHHHHHHHHHHhCCCCCCcEEEEE
Confidence 10 00111 0011 23444567887 988875 3333335778899877743 336
Q ss_pred eeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCC-CCccccHhhHHH
Q 003764 501 SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR-SDSLIRLDRLEY 571 (797)
Q Consensus 501 ~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~-~~~~~~~~~Le~ 571 (797)
+++..+|+|||||+|+ ..++..+.+. |.++|+|.|++..+... .+..++++.+.+
T Consensus 337 g~v~~~G~KMSKS~GN---------------vv~p~d~i~~-~GaDalR~~ll~~~~~~~~d~~f~~~~~~~ 392 (560)
T 3h99_A 337 GYVTVNGAKMSKSRGT---------------FIKASTWLNH-FDADSLRYYYTAKLSSRIDDIDLNLEDFVQ 392 (560)
T ss_dssp CCEEETTEECCTTTTC---------------CCBHHHHHHH-SCHHHHHHHHHHHCCSSCCCEEECHHHHHH
T ss_pred eEEEeCCeeccccCCC---------------cCCHHHHHHH-cCcHHHHHHHHHhCCCCCCCCCcCHHHHHH
Confidence 7788899999999998 3567778777 99999999998876543 455788777654
No 25
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.55 E-value=3.2e-14 Score=163.24 Aligned_cols=275 Identities=16% Similarity=0.160 Sum_probs=160.1
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCC----------------chhchHHHHHHHHHHHHHc
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQWM 336 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar--~~~G~~iLRidDtD----------------p~re~~e~~~~I~e~L~wL 336 (797)
+++=-.|.|||.|||||+|++++.+.+|| .+.|.-++++.++| |......+.+.|.+++++|
T Consensus 15 ~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 94 (524)
T 2x1l_A 15 YITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKL 94 (524)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 45666799999999999999999999999 46888888888888 3333557899999999999
Q ss_pred CCCCCcccCCch--hHHHHHHHHHHHHHcCccccC-----CCCHHHH-HHHhc--c---CCCCCCC-CCChHH-------
Q 003764 337 GWEPFKITYTSD--YFQELYELAVELIRRGHAYVD-----HQTPEEI-KEYRE--K---KMNSPWR-DRPIAE------- 395 (797)
Q Consensus 337 Gl~pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~C-----~cs~eel-~~~r~--~---~~~~~~R-~~s~ee------- 395 (797)
|+.+|..+++|+ |.+.+.+...+|.++|++|.. +|...+- -..+. . +..|+.| ..+++.
T Consensus 95 gi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~qwF 174 (524)
T 2x1l_A 95 NISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYF 174 (524)
T ss_dssp TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEE
T ss_pred CCcCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEecCCeE
Confidence 999998777887 888889999999999999842 3332210 00000 0 0011101 111110
Q ss_pred -----H-hHHHHHhhcCcccCCceEE--EEEecCC-CCCCCcCccEEEEEecC-CCCCCCCc------c----------c
Q 003764 396 -----S-LKLFEDMRNGRIEEGKATL--RMKQDMQ-NDNFNMYDLIAYRIKFT-PHPHAGDK------W----------C 449 (797)
Q Consensus 396 -----~-l~~fe~m~~G~~~~g~~~l--R~K~d~~-~~~~~~~D~V~~r~~~~-~h~~~gd~------~----------~ 449 (797)
- -.+.+....+. .... +.+..+. .-...++|+.+-|.... .+|..+++ | .
T Consensus 175 ~~l~~~~~~l~~~~~~~~----~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~~~~~ 250 (524)
T 2x1l_A 175 FRLSAYTDRLLALYEEHP----EFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGV 250 (524)
T ss_dssp ECGGGSHHHHHHHHHHCG----GGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHHTT
T ss_pred eeHHHHHHHHHHHHHhCC----CeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCEEEEecCCchHHHHHc
Confidence 0 00001011110 0000 0000000 00123567777664211 11111110 2 1
Q ss_pred ccccccccch--hhhccCCccEEecCcccccchhHH-HH--HHHHhCCCCC-ceeeeeeccCCCceecccccccccccCc
Q 003764 450 IYPSYDYAHC--IVDSIENITHSLCTLEFETRRASY-FW--LLHALGLYQP-YVWEYSRLNVSNTVMSKRKLNFLVTNKY 523 (797)
Q Consensus 450 ~~PtY~fA~~--VDD~~~gITHvlRG~E~~~~t~~q-~~--L~~aLg~~~P-~~~~f~~Ln~~g~kLSKRk~~~~v~~g~ 523 (797)
+||. .|. ... ...++.-+-|.|+.- +.+ .| +..++|+..| .+|.++++..+|.|||||+|+
T Consensus 251 g~p~---~~~~~~~~-~~p~di~~~G~D~~~--fh~~~~~a~l~~~g~~~~~~v~~hG~v~~~G~KMSKS~GN------- 317 (524)
T 2x1l_A 251 GFPD---TESESFRR-YWPADLHMIGKDIIR--FHTVYWPAFLMSAGLPLPKRIFAHGWLLNRGEKMSKSIGN------- 317 (524)
T ss_dssp TTTC---TTSHHHHH-HCSCSEEEEEGGGHH--HHHTHHHHHHHHHTCCCCSCEEEECCEEECSCSEETTTEE-------
T ss_pred CCCC---CchHHHHh-hCCCeEEEEeechhH--hHHHHHHHHHHHCCCCCCcEEEECcEEEeCCcccCCcCCC-------
Confidence 1221 010 000 112333334555541 211 11 2345688665 577889988899999999998
Q ss_pred cCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHHH
Q 003764 524 VDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 575 (797)
Q Consensus 524 v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~ 575 (797)
..++..+.+. |.++++|.|++..+....+..++++.+.+....
T Consensus 318 --------~v~p~d~i~~-~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~ 360 (524)
T 2x1l_A 318 --------VVDPVNLVDT-FGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNA 360 (524)
T ss_dssp --------SSCHHHHHHH-HCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHH
T ss_pred --------CCCHHHHHHH-cChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Confidence 3567777765 889999999998665556678888888776543
No 26
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=99.43 E-value=1.6e-12 Score=143.55 Aligned_cols=193 Identities=13% Similarity=0.080 Sum_probs=132.1
Q ss_pred cHHHHHHhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec----CC-ch------hchHHHHHH
Q 003764 260 TKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----TN-PE------AEKKEYIDH 328 (797)
Q Consensus 260 ~~~~~~~~~~~~~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidD----tD-p~------re~~e~~~~ 328 (797)
+.+-|++.|+...-.|.++|. |||.|||||+..++.+|.+.+ .|+.+++.|.| |+ |. +....+.+.
T Consensus 23 ~~~~L~~~L~~~~~~vy~G~~--PTG~lHlG~~~~~l~~~~~~q-~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~ 99 (372)
T 1n3l_A 23 GEEKLKEILKERELKIYWGTA--TTGKPHVAYFVPMSKIADFLK-AGCEVTILFADLHAYLDNMKAPWELLELRVSYYEN 99 (372)
T ss_dssp CHHHHHHHHTTSCCEEEEEEC--CSSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCEEEeCcC--CCCcccHHHHHHHHHHHHHHH-CCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHH
Confidence 356677778764557899999 579999999999999999987 79999999999 75 42 234455665
Q ss_pred -HHHHHHHcCCCCCc--ccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhc
Q 003764 329 -IEEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRN 405 (797)
Q Consensus 329 -I~e~L~wLGl~pd~--~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~ 405 (797)
|...+.|+|++|++ +.+||++. ..-+++..++. |.|+||..+++.... . +
T Consensus 100 ~i~~~lla~Gldp~k~~i~~qS~~~-~~~~~~~~~~~----l~~~~t~~~~~~~~~-----~-----v------------ 152 (372)
T 1n3l_A 100 VIKAMLESIGVPLEKLKFIKGTDYQ-LSKEYTLDVYR----LSSVVTQHDSKKAGA-----E-----V------------ 152 (372)
T ss_dssp HHHHHHHHHTCCCTTEEEEEGGGTT-TSHHHHHHHHH----HHTTSCHHHHHHHTT-----T-----T------------
T ss_pred HHHHHHHHcCCChhhcEEEECCeec-ccHHHHHHHHH----HHhhCcHHHHHhchh-----h-----h------------
Confidence 55567999999985 78999973 12244554444 789999988765310 0 0
Q ss_pred CcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHH
Q 003764 406 GRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFW 485 (797)
Q Consensus 406 G~~~~g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~ 485 (797)
.|.+ .+. -.+..+|..--+.|-.+.+.+|+++|.|...+.....-
T Consensus 153 ---------~~~~----------~~~----------------~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~~~~~l~rd 197 (372)
T 1n3l_A 153 ---------VKQV----------EHP----------------LLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEK 197 (372)
T ss_dssp ---------SCCC----------SSC----------------CHHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHH
T ss_pred ---------hccc----------CCC----------------cceeeecchHhhccHHHhcCCEEEcChhHHHHHHHHHH
Confidence 0000 000 01223444444445556789999999999999999999
Q ss_pred HHHHhCCCCCceeeeeec-cCCCceeccccccc
Q 003764 486 LLHALGLYQPYVWEYSRL-NVSNTVMSKRKLNF 517 (797)
Q Consensus 486 L~~aLg~~~P~~~~f~~L-n~~g~kLSKRk~~~ 517 (797)
|++.+|+..|...+.+.+ +.+|+|||||.++.
T Consensus 198 l~~r~~~~~p~~l~~pll~gldG~KMSKS~~ns 230 (372)
T 1n3l_A 198 YLPALGYSKRVHLMNPMVPGLTGSKMSSSEEES 230 (372)
T ss_dssp HGGGGTCCCCEEEEECCCCCSSCC-------CC
T ss_pred HHHHcCCCCCEEEecCccCCCCcccccCCCCCC
Confidence 999999988877776664 78899999998873
No 27
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=99.42 E-value=6.2e-13 Score=144.18 Aligned_cols=191 Identities=16% Similarity=0.123 Sum_probs=144.0
Q ss_pred HHHHHHhhhh-cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec-------CCchhchHHHHHHHHHH
Q 003764 261 KEVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD-------TNPEAEKKEYIDHIEEI 332 (797)
Q Consensus 261 ~~~~~~~~~~-~~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidD-------tDp~re~~e~~~~I~e~ 332 (797)
++-|.+.|+. ..-.+.+.|. |||.|||||+ .++.+|...+..|+.+++.|-| ..+..+..++...|.++
T Consensus 20 ~~~l~~~l~~~~~~~vy~G~~--PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~ 96 (323)
T 2cyb_A 20 EEELRQLIETKEKPRAYVGYE--PSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKV 96 (323)
T ss_dssp HHHHHHHHHSCSCCEEEEEEC--CCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEECcC--CCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHH
Confidence 5667777864 2335777785 6799999998 5688999999989999999976 32444678888999999
Q ss_pred HHHcCCCCCc--ccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccC
Q 003764 333 VQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEE 410 (797)
Q Consensus 333 L~wLGl~pd~--~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~ 410 (797)
+.|+|++|++ +.+||+.... -+++ +....|.|+||..++.+... +- |..
T Consensus 97 ~~a~Gldp~k~~i~~qS~~~~~-~~~~----~~~~~l~~~~t~~~l~~~~~--~~--------------------~~~-- 147 (323)
T 2cyb_A 97 FIALGLDESRAKFVLGSEYQLS-RDYV----LDVLKMARITTLNRARRSMD--EV--------------------SRR-- 147 (323)
T ss_dssp HHHTTCCTTTCEEEEGGGTTTS-HHHH----HHHHHHHHHSBHHHHHHHTT--TT--------------------CSC--
T ss_pred HHHhCCCccceEEEEcchhccc-hHHH----HHHHHHhCccCHHHHhccch--hh--------------------ccc--
Confidence 9999999986 6899998532 1222 22344789999998875411 10 000
Q ss_pred CceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHh
Q 003764 411 GKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 490 (797)
Q Consensus 411 g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aL 490 (797)
. + +.-.+..+|.+..+.|+...+++|+++|.|...+...+..|++.+
T Consensus 148 ----------~--------~---------------~~~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~l~rdla~~~ 194 (323)
T 2cyb_A 148 ----------K--------E---------------DPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRL 194 (323)
T ss_dssp ----------S--------S---------------SCBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGG
T ss_pred ----------c--------C---------------CCCchhhhhHHHHHHHHHhcCCCEEEechhhHHHHHHHHHHHHhc
Confidence 0 0 001235688888889999999999999999999999999999999
Q ss_pred CCCCCceeeeeec-cCCCceecccccc
Q 003764 491 GLYQPYVWEYSRL-NVSNTVMSKRKLN 516 (797)
Q Consensus 491 g~~~P~~~~f~~L-n~~g~kLSKRk~~ 516 (797)
|...|...+.+++ +.+|+|||||.++
T Consensus 195 ~~~~p~~l~~pll~~l~G~KMSKS~~n 221 (323)
T 2cyb_A 195 GYSSPVCLHTPILVGLDGQKMSSSKGN 221 (323)
T ss_dssp TCCCCEEEEECCCBCTTSSBCCTTTTC
T ss_pred CCCCceEEecCcccCCCCCcccCCcCc
Confidence 9988887777764 7889999999654
No 28
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.37 E-value=5.5e-12 Score=142.94 Aligned_cols=259 Identities=15% Similarity=0.186 Sum_probs=156.0
Q ss_pred CCeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCch-hchHHHHHHHH-HHHH-HcCCCC--Ccc
Q 003764 272 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE-AEKKEYIDHIE-EIVQ-WMGWEP--FKI 343 (797)
Q Consensus 272 ~g~v~tRF-aPsPtG~LHIGharaal~n~~~Ar--~~~G~~iLRidDtDp~-re~~e~~~~I~-e~L~-wLGl~p--d~~ 343 (797)
+.+|+.=| +|+|||+||+||+|++++.+.+|| ...|.=++|.-=+|.- +...-...++. +-.+ ++|... .+-
T Consensus 29 ~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p~~ 108 (464)
T 3fnr_A 29 QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPEQ 108 (464)
T ss_dssp SCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCCSS
T ss_pred CCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCchh
Confidence 45799999 899999999999999999999998 4567778887777643 44433444442 2244 456542 223
Q ss_pred cCCchhHHHHHHHHHHHHHc-CccccCCCCHHHHHH---------Hhc--c----CCC------CCCCCCChHHHhHHHH
Q 003764 344 TYTSDYFQELYELAVELIRR-GHAYVDHQTPEEIKE---------YRE--K----KMN------SPWRDRPIAESLKLFE 401 (797)
Q Consensus 344 ~~qSd~~~~~ye~a~~LI~~-G~AY~C~cs~eel~~---------~r~--~----~~~------~~~R~~s~ee~l~~fe 401 (797)
.|+.+| +.+.|+++.++ +..|...-..+.+.+ ++. . .++ +.+. ..++.++.++
T Consensus 109 ~y~g~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess~~~--~~~~vv~~L~ 183 (464)
T 3fnr_A 109 YYKGEY---IVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERSYYD--ALNATLESLK 183 (464)
T ss_dssp CCCSHH---HHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGGGGST--THHHHHHHHH
T ss_pred hcCccH---HHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHHHHHH--HHHHHHHHHH
Confidence 455555 34566666655 544432111111111 111 0 111 1222 4444443333
Q ss_pred HhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCccccccccc---ccchhhhccCCccEE--ecCccc
Q 003764 402 DMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD---YAHCIVDSIENITHS--LCTLEF 476 (797)
Q Consensus 402 ~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~---fA~~VDD~~~gITHv--lRG~E~ 476 (797)
+ .|...+.+-++.++.+. .+. -.|.|+-|. +| .|||. +|..+++..++++++ |+|.|+
T Consensus 184 ~--~g~~~e~dGa~~~~~~~-~g~--~~~~vl~ks-------DG-----~~~Y~t~DiA~~~~r~~~~~d~~Iyv~G~dq 246 (464)
T 3fnr_A 184 E--HKGIYEQEGKIWLASSQ-KGD--EKDRVIIRE-------DG-----RGTYLAADIVYHKDKMSRGYGKCINIWGADH 246 (464)
T ss_dssp H--TTCEEEETTEEEECGGG-GTC--SSCEEEECT-------TS-----CBCHHHHHHHHHHHHHTSSCSEEEEEEEGGG
T ss_pred H--CCCEEEeCCeEEEEecc-cCC--CCceEEEeC-------CC-----ceehhhHHHHHHHHHHHcCCCeEEEEecCcH
Confidence 2 35443333344554331 111 146676664 33 67776 789999999999998 599999
Q ss_pred ccchhHHHHHHHHhCCCCCceee--eeecc--CCCc--eecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHH
Q 003764 477 ETRRASYFWLLHALGLYQPYVWE--YSRLN--VSNT--VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINA 550 (797)
Q Consensus 477 ~~~t~~q~~L~~aLg~~~P~~~~--f~~Ln--~~g~--kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~ 550 (797)
..+.+++..+++++|+..|..-+ |+.++ .+|+ |||||+|+ ..++..+.+. +.++|++.
T Consensus 247 ~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn---------------~v~l~dll~~-~g~dalRy 310 (464)
T 3fnr_A 247 HGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGN---------------FILMSDVVDE-IGSDALRY 310 (464)
T ss_dssp GGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCS---------------SCBHHHHHHH-HCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCC---------------CCCHHHHHhh-ccHHHHHH
Confidence 99999999999999997664333 34443 4785 99999998 3467777765 67888888
Q ss_pred HHHHhCCCCCCccccHhhH
Q 003764 551 FVQGIGISRSDSLIRLDRL 569 (797)
Q Consensus 551 fl~~lG~s~~~~~~~~~~L 569 (797)
|+++... .++..++++.+
T Consensus 311 ~~l~~~~-~~d~~Fd~~~~ 328 (464)
T 3fnr_A 311 IFLSKKC-DTHLEFDISDL 328 (464)
T ss_dssp HTTSSCT-TSCEEEEGGGG
T ss_pred HHHhcCC-CCCCccCHHHH
Confidence 8765432 23334555443
No 29
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.32 E-value=2.8e-11 Score=140.37 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=79.1
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCch-------------hchHHHHHHHHHHHHHc
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWM 336 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar-----~~~G~~iLRidDtDp~-------------re~~e~~~~I~e~L~wL 336 (797)
++|--.|.|||++||||+|++++.+.+|| +++..|+.-+||.+.+ .....+.+.|.+++++|
T Consensus 29 ~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~l 108 (564)
T 3kfl_A 29 FATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEM 108 (564)
T ss_dssp EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 78888899999999999999999998888 4667788888888733 33567889999999999
Q ss_pred CCCCCcccCCc--hhHHHHHHHHHHHHHcCcccc
Q 003764 337 GWEPFKITYTS--DYFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 337 Gl~pd~~~~qS--d~~~~~ye~a~~LI~~G~AY~ 368 (797)
|+.+|..++.+ .|.+.+.+..++|.++|++|.
T Consensus 109 gi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~ 142 (564)
T 3kfl_A 109 NYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYL 142 (564)
T ss_dssp TCCCSEEEETTSHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCCCCccccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 99999755555 577778888999999999985
No 30
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.32 E-value=3.9e-12 Score=148.48 Aligned_cols=250 Identities=12% Similarity=0.102 Sum_probs=164.1
Q ss_pred CCeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCC---EEEEEeec-------------------------CC---
Q 003764 272 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGG---YCYLRYDD-------------------------TN--- 317 (797)
Q Consensus 272 ~g~v~tRF-aPsPtG~LHIGharaal~n~~~Ar--~~~G---~~iLRidD-------------------------tD--- 317 (797)
+++|+.=| +|+|+|+|||||+|++++-+.+|| .+-| ..+-.|.| +|
T Consensus 142 ~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l~ 221 (607)
T 1f7u_A 142 NKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLF 221 (607)
T ss_dssp CCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHH
T ss_pred CCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHHH
Confidence 45788888 999999999999999999888887 3344 44444555 11
Q ss_pred --------------------c-----hh-------------------chHHHHHHHHHHHHHcCCCCCcccCCchhH-HH
Q 003764 318 --------------------P-----EA-------------------EKKEYIDHIEEIVQWMGWEPFKITYTSDYF-QE 352 (797)
Q Consensus 318 --------------------p-----~r-------------------e~~e~~~~I~e~L~wLGl~pd~~~~qSd~~-~~ 352 (797)
+ .+ ....+.+.+.++++.||+..|.....|+|. +.
T Consensus 222 ~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~~~~~~ 301 (607)
T 1f7u_A 222 DVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKES 301 (607)
T ss_dssp HHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCHHH
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcchhhhhH
Confidence 0 11 134567788999999999998777888887 67
Q ss_pred HHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccE
Q 003764 353 LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI 432 (797)
Q Consensus 353 ~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V 432 (797)
+.+..+.|.++|++|... +..| +++ +- .+. ...+.|
T Consensus 302 ~~~vi~~L~~kG~~ye~d--------------Ga~~--------------------------~~~--~~-~g~-~~d~~v 337 (607)
T 1f7u_A 302 MLKAIDLFKEKGLTHEDK--------------GAVL--------------------------IDL--TK-FNK-KLGKAI 337 (607)
T ss_dssp HHHHHHHHHHTTCEEEET--------------TEEE--------------------------EEG--GG-TCT-TTCEEE
T ss_pred HHHHHHHHHhCCCEEEEC--------------CcEE--------------------------EEe--cc-cCC-CCCcee
Confidence 778889999999999521 0011 111 10 000 111344
Q ss_pred EEEEecCCCCCCCCcccccccccccchhhhc-cCCccEEe--cCcccccchhHHHHHHHHhCCCCCceeeeeec-cCCCc
Q 003764 433 AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDS-IENITHSL--CTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNT 508 (797)
Q Consensus 433 ~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~-~~gITHvl--RG~E~~~~t~~q~~L~~aLg~~~P~~~~f~~L-n~~g~ 508 (797)
+-|. +|+. .|-|=|+|.+++.+ ..+.+++| .|.++..+-++...+.+++|+..+.+|.|..+ .+.
T Consensus 338 ~~Ks-------DG~~--~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~~~~~~~Hv~fg~v~-- 406 (607)
T 1f7u_A 338 VQKS-------DGTT--LYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNFGMVQ-- 406 (607)
T ss_dssp EECT-------TSCC--CHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECCCCEE--
T ss_pred Eecc-------CCCc--CCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCCCcCcEEEEecccccc--
Confidence 4332 2310 13333556677766 35788887 99999999988888889999977766766332 222
Q ss_pred eecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCC---ccccHhhHHH-----HHHHhhhcc
Q 003764 509 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD---SLIRLDRLEY-----HIREELNKT 580 (797)
Q Consensus 509 kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~---~~~~~~~Le~-----~ir~~~~~~ 580 (797)
+||||+|+ ..+|+.|.+.... .| .+ +.. +.++ ..-+++.+.+ ++|-++...
T Consensus 407 kMSkR~G~---------------~v~L~dLlde~~~-~a-~~-~~~---~~~~~~~~~~e~~~~a~~vgi~avry~~Ls~ 465 (607)
T 1f7u_A 407 GMSTRKGT---------------VVFLDNILEETKE-KM-HE-VMK---KNENKYAQIEHPEEVADLVGISAVMIQDMQG 465 (607)
T ss_dssp SCCGGGTC---------------CCBHHHHHHHHHH-HH-HH-HHH---TCHHHHTTCSCHHHHHHHHHHHHHHHHHHSS
T ss_pred cccCCCCC---------------cccHHHHHHHHHH-HH-HH-HHH---hCcccccchhhHHHHHHHHHHHHHHHHHhcc
Confidence 69999998 4688998887443 44 22 222 1110 0112334443 788899999
Q ss_pred CCceeeEeccceEEEEc
Q 003764 581 APRTMVVLNPLKVVITN 597 (797)
Q Consensus 581 ~~R~~av~dp~kl~i~n 597 (797)
-+|...+||+.++...+
T Consensus 466 ~~~s~~~Fd~d~~~~~~ 482 (607)
T 1f7u_A 466 KRINNYEFKWERMLSFE 482 (607)
T ss_dssp CTTCCEECCHHHHHCCS
T ss_pred CCCCCcccCHHHHHHHh
Confidence 99999999998876554
No 31
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.26 E-value=1.4e-11 Score=144.60 Aligned_cols=98 Identities=19% Similarity=0.168 Sum_probs=75.8
Q ss_pred CCeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecC-----------------------------
Q 003764 272 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDT----------------------------- 316 (797)
Q Consensus 272 ~g~v~tRF-aPsPtG~LHIGharaal~n~~~Ar-----~~~G~~iLRidDt----------------------------- 316 (797)
+++|+.=| +|+|||+|||||+|++++-+.+|| +|...++--|+|.
T Consensus 118 ~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~~ 197 (629)
T 2zue_A 118 GKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERG 197 (629)
T ss_dssp TCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhcccc
Confidence 45788888 999999999999999999888888 3444555556664
Q ss_pred ---Cch----------------------------------------hchHHHHHHHHHHHHHcCCCCCcccCCchh--HH
Q 003764 317 ---NPE----------------------------------------AEKKEYIDHIEEIVQWMGWEPFKITYTSDY--FQ 351 (797)
Q Consensus 317 ---Dp~----------------------------------------re~~e~~~~I~e~L~wLGl~pd~~~~qSd~--~~ 351 (797)
||. .....+.+.|.++++.||+..|.....|++ .+
T Consensus 198 ~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~es~~~~~~ 277 (629)
T 2zue_A 198 LKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVRRK 277 (629)
T ss_dssp SCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSEEEEHHHHHHTT
T ss_pred cccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccccccCcCccccch
Confidence 111 113456678889999999999988788887 55
Q ss_pred HHHHHHHHHHHcCccccC
Q 003764 352 ELYELAVELIRRGHAYVD 369 (797)
Q Consensus 352 ~~ye~a~~LI~~G~AY~C 369 (797)
.+.+..++|.++|++|.|
T Consensus 278 ~v~~vi~~L~~kG~~y~~ 295 (629)
T 2zue_A 278 LFEIALELLSKNENFYIP 295 (629)
T ss_dssp HHHHHHHHHHTSTTEECC
T ss_pred hHHHHHHHHHHCCCcccc
Confidence 677888999999999965
No 32
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.23 E-value=1.2e-10 Score=133.93 Aligned_cols=94 Identities=16% Similarity=0.108 Sum_probs=72.7
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCCc----------------hhchHHHHHHHHHHHHHc
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP----------------EAEKKEYIDHIEEIVQWM 336 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~--~~G~~iLRidDtDp----------------~re~~e~~~~I~e~L~wL 336 (797)
++|==.|.|||.||||||++.++.+.++|. ..|.=++-+.+||. ..-..+|.+.|.+++++|
T Consensus 12 ~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~~l 91 (542)
T 3u1f_A 12 FVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFEQM 91 (542)
T ss_dssp EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 566667999999999999999999999983 45655555666663 223567889999999999
Q ss_pred CCCCCcccCCc--hhHHHHHHHHHHHHHcCcccc
Q 003764 337 GWEPFKITYTS--DYFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 337 Gl~pd~~~~qS--d~~~~~ye~a~~LI~~G~AY~ 368 (797)
|+.+|-.++.+ +|.....+...+|.++|++|.
T Consensus 92 gi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 125 (542)
T 3u1f_A 92 DYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYL 125 (542)
T ss_dssp TCCCSEEEETTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCccCcCccCCCHHHHHHHHHHHHHHhhcCcEEe
Confidence 99988654444 465566677789999999984
No 33
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.10 E-value=1.8e-09 Score=128.61 Aligned_cols=94 Identities=16% Similarity=0.101 Sum_probs=73.5
Q ss_pred EEEEeCCCCCCcCchhHHHH-HHHHHHHHH-----HcCCEEEEEeecCCch-------------hchHHHHHHHHHHHHH
Q 003764 275 VLTRFPPEPNGYLHIGHAKA-MFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQW 335 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGhara-al~n~~~Ar-----~~~G~~iLRidDtDp~-------------re~~e~~~~I~e~L~w 335 (797)
++|==+|.|||.+||||+++ .++.+.+|| +++..|+.-+|+...+ ....+|.+.|.+++++
T Consensus 5 ~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~~ 84 (722)
T 1rqg_A 5 MVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQR 84 (722)
T ss_dssp EEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 55666899999999999998 888888888 2444566677766532 2356788999999999
Q ss_pred cCCCCCcccCCch--hHHHHHHHHHHHHHcCcccc
Q 003764 336 MGWEPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 336 LGl~pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~ 368 (797)
||+.+|..+++++ |.....+...+|.++|++|.
T Consensus 85 lgis~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~ 119 (722)
T 1rqg_A 85 AKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVK 119 (722)
T ss_dssp HTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 9999997666554 66666778889999999884
No 34
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=98.71 E-value=1.5e-07 Score=103.70 Aligned_cols=193 Identities=12% Similarity=0.043 Sum_probs=129.8
Q ss_pred cHHHHHHhhhhc-CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec----CCc-h-h---chHHHHHHH
Q 003764 260 TKEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----TNP-E-A---EKKEYIDHI 329 (797)
Q Consensus 260 ~~~~~~~~~~~~-~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidD----tDp-~-r---e~~e~~~~I 329 (797)
+++-|++.++.. .-.+.+-|.| ||.||||| ..++.+|......|..+++.|.| |++ . + ...+....+
T Consensus 22 ~~~~L~~~l~~~~~~~iy~G~~P--Tg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~ 98 (364)
T 2cya_A 22 TEEELKGLLASGARIKGYIGYEP--SGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIV 98 (364)
T ss_dssp THHHHHHHHHHCSCCEEEEEECC--CSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCEEEeccCC--CCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHH
Confidence 356677778653 3457888876 59999999 77788999888889999999999 332 1 2 345666788
Q ss_pred HHHHHHcCCCCCc--ccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCc
Q 003764 330 EEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGR 407 (797)
Q Consensus 330 ~e~L~wLGl~pd~--~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~ 407 (797)
..++.++|++|++ +.+||+.... ..+...++ -+.|++|-.++.+.. .+ ..
T Consensus 99 ~~~~la~G~dp~k~~i~~qS~~~~~-~~~~~~~~----~l~~~~t~~~l~r~~--~~----k~----------------- 150 (364)
T 2cya_A 99 RRVMEAAGVPVERVRFVDAEELASD-KDYWGLVI----RVAKRASLARVRRAL--TI----MG----------------- 150 (364)
T ss_dssp HHHHHHTTCCGGGCEEEEHHHHHTC-HHHHHHHH----HHHHTSCHHHHHTTC---------------------------
T ss_pred HHHHHHhCCCccceEEEecchhhcc-hHHHHHHH----HHHCcCcHHHHHcCc--hh----hh-----------------
Confidence 8899999999975 7789988643 23333333 357888887775321 00 00
Q ss_pred ccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHH
Q 003764 408 IEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLL 487 (797)
Q Consensus 408 ~~~g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~ 487 (797)
|.. .++ + --.+.-+|-.--+.|-...+.+|++.|.|-..+.....-|.
T Consensus 151 --------r~~----~~~-------------------~-i~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~~l~rdla 198 (364)
T 2cya_A 151 --------RRA----EEA-------------------E-VDASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVA 198 (364)
T ss_dssp ----------C----CGG-------------------G-SCTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHH
T ss_pred --------hhc----CCC-------------------C-ccchhhhhHHHHHhhHHhcCCCEEeccchHHHHHHHHHHHH
Confidence 000 000 0 00112333333344444578999999999999988888889
Q ss_pred HHhCCCCCceeeeeec-cCC-----------------Cceeccccc
Q 003764 488 HALGLYQPYVWEYSRL-NVS-----------------NTVMSKRKL 515 (797)
Q Consensus 488 ~aLg~~~P~~~~f~~L-n~~-----------------g~kLSKRk~ 515 (797)
+.+|...|...+.+++ ..+ |+|||||..
T Consensus 199 ~r~~~~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~ 244 (364)
T 2cya_A 199 EKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP 244 (364)
T ss_dssp TTTTCCCCEEEEECCCBCSSCC----------------CBCCSSSG
T ss_pred HHcCCCCceeeccceeeCCCcccccccccccccccccccccCCCCC
Confidence 9999888877666663 566 799999953
No 35
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=98.60 E-value=3.2e-07 Score=100.13 Aligned_cols=181 Identities=17% Similarity=0.155 Sum_probs=117.3
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec----C----CchhchHHHHHHHHHHHHHcCCCCC--c
Q 003764 273 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----T----NPEAEKKEYIDHIEEIVQWMGWEPF--K 342 (797)
Q Consensus 273 g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidD----t----Dp~re~~e~~~~I~e~L~wLGl~pd--~ 342 (797)
..|.+.|. |||.|||||...++.+|......|..+++.|.| | ||+. ..+....+..++.++|++|+ .
T Consensus 13 ~~v~~G~~--PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~-~~~~~~~~~~~~lA~Gldp~k~~ 89 (340)
T 2g36_A 13 MRILSGMR--PTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSK-LKEYTRDLVRGFLACGIDPEKSV 89 (340)
T ss_dssp CEEEEEEC--CCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTT-HHHHHHHHHHHHHHTTCCTTTSE
T ss_pred CeEEEeeC--CCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHH-HHHHHHHHHHHHHHhCCChhHeE
Confidence 34555554 569999999998888998888889999999999 6 6654 56667777888999999998 4
Q ss_pred ccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCC
Q 003764 343 ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ 422 (797)
Q Consensus 343 ~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~ 422 (797)
+.+||+..+ +.+.+. .+.|.++-.++.... . |.+. .-|++.
T Consensus 90 if~qS~~~~-~~el~~-------~l~~~~~v~~l~r~~--~----------------~k~~----------~~r~~~--- 130 (340)
T 2g36_A 90 IFVQSGVKE-HAELAL-------LFSMIVSVSRLERVP--T----------------YKEI----------KSELNY--- 130 (340)
T ss_dssp EEEGGGCTH-HHHHHH-------HHHTTSCHHHHHTCH--H----------------HHTC-------------------
T ss_pred EEECCchHH-HHHHHH-------HHHccCCHHHHHHhH--H----------------HHhH----------HHHhcc---
Confidence 789999754 334322 356888887765321 0 0000 001110
Q ss_pred CCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhC------CCCCc
Q 003764 423 NDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPY 496 (797)
Q Consensus 423 ~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg------~~~P~ 496 (797)
.| +.. .+.-+|-.--+.|-.+.+.++++.|.|-..+.....-|.+.++ +..|.
T Consensus 131 ------~~--------------~~~-~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~ 189 (340)
T 2g36_A 131 ------KD--------------LST-AGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEPE 189 (340)
T ss_dssp -------C--------------CCS-HHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCE
T ss_pred ------CC--------------CCC-hHHhhhHHHHHhhHHHhCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCch
Confidence 00 000 1223333333344446799999999999988887777777653 23453
Q ss_pred ee--eeee-ccCCCceecccccc
Q 003764 497 VW--EYSR-LNVSNTVMSKRKLN 516 (797)
Q Consensus 497 ~~--~f~~-Ln~~g~kLSKRk~~ 516 (797)
.. +.++ .+.+|+|||||.++
T Consensus 190 ~~~~~~~~l~gldG~KMSKS~~n 212 (340)
T 2g36_A 190 AILSRVPKLPGTDGRKMSKSYGN 212 (340)
T ss_dssp EEECCSCCCCCTTSSCCCGGGTC
T ss_pred hhhccccccCCCCccccCCCCCC
Confidence 22 2344 36789999999876
No 36
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=98.56 E-value=5.8e-08 Score=106.29 Aligned_cols=181 Identities=13% Similarity=0.074 Sum_probs=116.2
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec-------CCchhchHHHHHHHHHHHHHcCCCCC--cccC
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD-------TNPEAEKKEYIDHIEEIVQWMGWEPF--KITY 345 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidD-------tDp~re~~e~~~~I~e~L~wLGl~pd--~~~~ 345 (797)
+.+=|- |||.|||||...++.+|...+. +..+++.|.| .||+ +..+....+..++.++|++|+ .+.+
T Consensus 7 i~sG~~--PTG~lHLGn~vg~l~~~~~lQ~-~~~~~~~IaD~ha~~~~~d~~-~i~~~~~~~~~~~lA~Gldp~k~~if~ 82 (348)
T 2yy5_A 7 ALTGIQ--ASGKQHLGNYLGVMQSLIELQE-QCQLFVFVADLHSITVDFQPQ-ALKQNNFDLVRTLLAVGLDPQKACLFL 82 (348)
T ss_dssp EEEEEC--CCTTCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHTTCCTTTEEEEE
T ss_pred EEEeeC--CCCcccHHHHHHHHHHHHHHHh-CCcEEEEEcChhhccCCCCHH-HHHHHHHHHHHHHHHhCCChhHeEEEE
Confidence 445555 5699999999988999977666 7899999999 6775 555667778888999999998 5789
Q ss_pred CchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCC
Q 003764 346 TSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDN 425 (797)
Q Consensus 346 qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~ 425 (797)
||+..+ +.+..-.| .|.++..++.+... +..... .. + + +
T Consensus 83 qS~~~~-~~el~w~l-------~~~~~~~~l~R~~~--~k~~~~-----------------~~--~-----~--~----- 121 (348)
T 2yy5_A 83 QSDLLE-HSMMGYLM-------MVQSNLGELQRMTQ--FKAKKA-----------------EQ--T-----R--N----- 121 (348)
T ss_dssp GGGCHH-HHHHHHHH-------HHHSBHHHHHHCHH--HHTTC-------------------------------------
T ss_pred CCcccc-hhHHHHHH-------HhhccHHHHhchHH--HHHHHH-----------------hh--c-----c--c-----
Confidence 999865 44433222 47777777664311 100000 00 0 0 0
Q ss_pred CCcCccEEEEEecCCCCCCCCc--ccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhC------CCCCce
Q 003764 426 FNMYDLIAYRIKFTPHPHAGDK--WCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYV 497 (797)
Q Consensus 426 ~~~~D~V~~r~~~~~h~~~gd~--~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg------~~~P~~ 497 (797)
+.| . .+.. .-.||.-+= .|-.+.+.+||+.|.|-..+.....-|.+.++ +..|..
T Consensus 122 --~~~----~--------~~~~~g~~~YPvLQa---aDil~~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~~ 184 (348)
T 2yy5_A 122 --PNG----T--------LNIPTGLLTYPALMA---GDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQF 184 (348)
T ss_dssp -------------------CCBTHHHHHHHHHH---HHHHTTCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_pred --ccc----C--------CCCChhhhhhHHHHH---HHHHHhCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCCee
Confidence 000 0 0000 123554443 34445799999999999998888777777764 445654
Q ss_pred eee---ee-ccCCC--ceeccccccc
Q 003764 498 WEY---SR-LNVSN--TVMSKRKLNF 517 (797)
Q Consensus 498 ~~f---~~-Ln~~g--~kLSKRk~~~ 517 (797)
.+- ++ .+++| +|||||.++.
T Consensus 185 l~~~~~~~l~gL~g~~~KMSKS~~n~ 210 (348)
T 2yy5_A 185 VQNKDTNRIMDLFDPTKKMSKSSKNQ 210 (348)
T ss_dssp ECCTTTTTCBCSSCTTSBCCSSCSCG
T ss_pred ecccccccccCCCCcchhcCCCCCCC
Confidence 442 33 36677 8999999873
No 37
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=98.55 E-value=2.2e-07 Score=100.36 Aligned_cols=186 Identities=17% Similarity=0.185 Sum_probs=120.3
Q ss_pred HHHHHHhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec-CC------chhchHHHHHHHHHHH
Q 003764 261 KEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD-TN------PEAEKKEYIDHIEEIV 333 (797)
Q Consensus 261 ~~~~~~~~~~~~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidD-tD------p~re~~e~~~~I~e~L 333 (797)
.+-|++.|+...-.+.+.|.| ||.||||| ..++.+|...+..|..+++.|-| |. ...+..++...|..++
T Consensus 17 ~~~l~~~L~~~~~~vy~G~~P--Tg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~ 93 (314)
T 2zp1_A 17 EEELREVLKKDEKSAYIGFEP--SGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVF 93 (314)
T ss_dssp HHHHHHHHTSSSEEEEEEECC--CSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEccCC--CCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHH
Confidence 556777777223358899998 58999999 88889999999889999999954 32 2345677888999999
Q ss_pred HHcCCCCCcccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCce
Q 003764 334 QWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKA 413 (797)
Q Consensus 334 ~wLGl~pd~~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~ 413 (797)
.++|++ ..+.+||+.... ..+...|+ .+.|+++..++.+... +-. |..
T Consensus 94 ~a~G~d-~~~~~qs~~~~~-~~~~~~~~----~l~~~~t~~~l~~~~~--~~~--~~~---------------------- 141 (314)
T 2zp1_A 94 EAMGLK-AKYVYGSEFQLD-KDYTLNVY----RLALKTTLKRARRSME--LIA--RED---------------------- 141 (314)
T ss_dssp HHTTCC-CEEEEGGGTTTS-HHHHHHHH----HHHHHSCHHHHHHHTT--TTS--CCC----------------------
T ss_pred HhcCCC-eEEEECChhhcc-hHHHHHHH----HHHCcCcHHHHhccch--hhh--hcc----------------------
Confidence 999998 667789998644 23343333 3568888888875421 100 000
Q ss_pred EEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhCCC
Q 003764 414 TLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY 493 (797)
Q Consensus 414 ~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg~~ 493 (797)
+ .. + .| --.||.-+=| |=...+.++++.|.|-..+. -|.+.+.-+
T Consensus 142 ------~--~~--~----------------~g--~~~YP~LQaa---Dil~~~~~~v~~G~DQ~~~~----~l~R~i~~~ 186 (314)
T 2zp1_A 142 ------E--NP--K----------------VA--EVIYPIMQVN---TSHYLGVDVAVGGMEQRKIH----MLARELLPK 186 (314)
T ss_dssp ------S--SC--C----------------TH--HHHHHHHHHH---HHHHHTCSEEEEEGGGHHHH----HHHHHHSSS
T ss_pred ------C--CC--C----------------ch--hhhhHHHHHH---hHHhhCCCEEEcChhHHHHH----HHHHHhcCC
Confidence 0 00 0 00 0123433322 22334899999999887654 233444446
Q ss_pred CCceeeeee-ccCCC-ceecccccc
Q 003764 494 QPYVWEYSR-LNVSN-TVMSKRKLN 516 (797)
Q Consensus 494 ~P~~~~f~~-Ln~~g-~kLSKRk~~ 516 (797)
.|...+.++ .+.+| +|||||.++
T Consensus 187 ~~~~~~~~~l~~l~G~~KMSKS~~~ 211 (314)
T 2zp1_A 187 KVVCIHNPVLTGLDGEGKMSSSKGN 211 (314)
T ss_dssp CCEEEEECCCBCTTSSSBCCTTTTC
T ss_pred CcEEeeccccccCCcccccCCCCcc
Confidence 676655555 36779 799999654
No 38
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=98.40 E-value=7e-07 Score=97.00 Aligned_cols=177 Identities=15% Similarity=0.097 Sum_probs=113.6
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeec----CCch--hchHHHHHHHHHHHHHcCCCCC--cccCC
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----TNPE--AEKKEYIDHIEEIVQWMGWEPF--KITYT 346 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidD----tDp~--re~~e~~~~I~e~L~wLGl~pd--~~~~q 346 (797)
+.+=|- |||.|||||...++.+|..... |..+++.|.| |+|. .+..+....+..++-++|++|+ .+.+|
T Consensus 4 vysG~~--PTG~lHlGn~vg~l~~~~~lQ~-g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~q 80 (328)
T 1i6k_A 4 IFSGIQ--PSGVITIGNYIGALRQFVELQH-EYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQ 80 (328)
T ss_dssp EEEEEC--CCSCCBHHHHHHTHHHHHHHTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred EEEeeC--CCCcccHHHHHHHHHHHHHHHc-CCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEec
Confidence 344444 5699999999988899987755 8899999999 7432 2455667788889999999998 47899
Q ss_pred chhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCC
Q 003764 347 SDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNF 426 (797)
Q Consensus 347 Sd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~ 426 (797)
|++.+ +.+.+-.| .|.++-.++.... -|.+... . +
T Consensus 81 S~~~~-~~~l~w~l-------~~~~~~~~l~r~~------------------~~k~~~~-~---~--------------- 115 (328)
T 1i6k_A 81 SEVPA-HAQAAWML-------QCIVYIGELERMT------------------QFKEKSA-G---K--------------- 115 (328)
T ss_dssp GGCTH-HHHHHHHH-------HHHSCHHHHHTCH------------------HHHHHHT-T---C---------------
T ss_pred Cchhh-hhHHHHHH-------hccccHHHHHHHH------------------HHHHHHh-c---c---------------
Confidence 99854 44444322 3666665554221 0111110 0 0
Q ss_pred CcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHhC------CCCCceee-
Q 003764 427 NMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWE- 499 (797)
Q Consensus 427 ~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aLg------~~~P~~~~- 499 (797)
| +.. .+.-+|-.--+.|-.+.+.++++.|.|-..+.....-|.+.++ +..|....
T Consensus 116 ---~--------------~~~-~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~li~ 177 (328)
T 1i6k_A 116 ---E--------------AVS-AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIP 177 (328)
T ss_dssp ---S--------------SCC-HHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECC
T ss_pred ---C--------------CCC-chhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHHHhCcccccccCCCeeeec
Confidence 0 000 1122333333344445789999999999988888877777766 33454332
Q ss_pred --eee-ccCCC--ceeccccccc
Q 003764 500 --YSR-LNVSN--TVMSKRKLNF 517 (797)
Q Consensus 500 --f~~-Ln~~g--~kLSKRk~~~ 517 (797)
.++ .+.+| +|||||.++.
T Consensus 178 ~~~~~l~gl~G~~~KMSKS~~n~ 200 (328)
T 1i6k_A 178 KVGARIMSLVDPTKKMSKSDPNP 200 (328)
T ss_dssp SSSSSCBCSSCTTSBCCTTCSCG
T ss_pred cccccccCCCCCccCCCCCCCCc
Confidence 133 36788 8999999873
No 39
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=98.33 E-value=3.1e-06 Score=92.23 Aligned_cols=172 Identities=14% Similarity=0.066 Sum_probs=110.8
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcC-CEEEEEeecC----C---ch-hchHHHHHHHHHHHHHcCCCCC--cccCCchhH
Q 003764 282 EPNGYLHIGHAKAMFVDFGLAKERG-GYCYLRYDDT----N---PE-AEKKEYIDHIEEIVQWMGWEPF--KITYTSDYF 350 (797)
Q Consensus 282 sPtG~LHIGharaal~n~~~Ar~~~-G~~iLRidDt----D---p~-re~~e~~~~I~e~L~wLGl~pd--~~~~qSd~~ 350 (797)
.|||.|||||...++.+|......| ..+++-|-|. + |. ....+....+..++.++|++|+ .+.+||+..
T Consensus 9 ~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i~~qS~~~ 88 (337)
T 2el7_A 9 QPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTLFVQSHVP 88 (337)
T ss_dssp CSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEEEEGGGST
T ss_pred CCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEEEEcCcch
Confidence 4669999999998888998777777 6888889882 2 22 2455677778888999999998 478999986
Q ss_pred HHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCCCCCcCc
Q 003764 351 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 430 (797)
Q Consensus 351 ~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~D 430 (797)
+ +.+.+. .+.|+++-.+|.+.. -|.+...+ .|
T Consensus 89 ~-~~el~~-------~l~~~~~~~~l~r~~------------------~~k~r~~~----------------------~~ 120 (337)
T 2el7_A 89 E-HTELSW-------VFTTLTPLGDLTRMT------------------QFKDKASK----------------------QE 120 (337)
T ss_dssp H-HHHHHH-------HHHHTSBHHHHHTSH------------------HHHHHTTS----------------------SS
T ss_pred h-hHHHHH-------HHHccCCHHHHHHhH------------------HHHHHhcc----------------------CC
Confidence 4 444332 256888777765320 01110000 00
Q ss_pred cEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHh----C--CCCCceeee---e
Q 003764 431 LIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL----G--LYQPYVWEY---S 501 (797)
Q Consensus 431 ~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aL----g--~~~P~~~~f---~ 501 (797)
+.. .+..+|-.--+.|-.+.+.++++.|.|-..+.....-|.+.+ | +..|...+- +
T Consensus 121 --------------~~~-~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p 185 (337)
T 2el7_A 121 --------------TVW-SGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEPQALLNPEAP 185 (337)
T ss_dssp --------------CCB-HHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSC
T ss_pred --------------CCC-hHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCCCeeecccccc
Confidence 000 112223222333334578999999999998888777777654 5 455644333 3
Q ss_pred e-ccCCC-ceecccccc
Q 003764 502 R-LNVSN-TVMSKRKLN 516 (797)
Q Consensus 502 ~-Ln~~g-~kLSKRk~~ 516 (797)
+ .+.+| +|||||.++
T Consensus 186 ~l~gldG~~KMSKS~~n 202 (337)
T 2el7_A 186 RVPGIDGKAKMSKSLGN 202 (337)
T ss_dssp CCBCTTSSSBCCTTTTC
T ss_pred cccCCCCccccCCCCCC
Confidence 4 36789 999999987
No 40
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=98.27 E-value=1.1e-06 Score=96.36 Aligned_cols=182 Identities=15% Similarity=0.069 Sum_probs=113.5
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCc------hhchHHHHHHHHHHHHHcCCCCC--ccc
Q 003764 273 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP------EAEKKEYIDHIEEIVQWMGWEPF--KIT 344 (797)
Q Consensus 273 g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtDp------~re~~e~~~~I~e~L~wLGl~pd--~~~ 344 (797)
-.+.+.|.| ||.|||||...++.+|...+.....+++.-|++.- ..+..+....|..++.++|++|+ .+.
T Consensus 23 ~~vysG~~P--TG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~ 100 (351)
T 1yi8_B 23 PRVLTGDRP--TGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCV 100 (351)
T ss_dssp SEEEEEECC--SSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEEEE
T ss_pred cEEEEeeCC--CCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEE
Confidence 358899987 59999999998888997655444455555554421 12455666778889999999998 478
Q ss_pred CCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCCCC
Q 003764 345 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQND 424 (797)
Q Consensus 345 ~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~~~ 424 (797)
+||+..+ +.+++ ..|.|+++-.+|.+. .+ |.++.. ..
T Consensus 101 ~qS~~~~-~~el~-------~~l~~~~~v~~l~r~-----------~~-------~k~~~~-~~---------------- 137 (351)
T 1yi8_B 101 VQSAVPE-LAELT-------VYFLNLVTVSHLRQN-----------PT-------VKAEIA-QK---------------- 137 (351)
T ss_dssp EGGGCTH-HHHHH-------HHHHTTSBHHHHHTC-----------HH-------HHHHHH-HH----------------
T ss_pred EcCchhh-HHHHH-------HHHhccCCHHHHHhh-----------hH-------HHHHHh-hc----------------
Confidence 8999754 33322 246799988877532 01 111110 00
Q ss_pred CCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHHHHHHHh----C--CCCCcee
Q 003764 425 NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL----G--LYQPYVW 498 (797)
Q Consensus 425 ~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~~L~~aL----g--~~~P~~~ 498 (797)
|+ . .+.. .+.-+|-.--+.|-.+.+.++++.|.|-..+.....-|.+.+ | +..|...
T Consensus 138 -----~f-------~----~~~~-~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~ 200 (351)
T 1yi8_B 138 -----GY-------G----ERVP-AGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQ 200 (351)
T ss_dssp -----TC-------T----TCCB-HHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEE
T ss_pred -----CC-------C----CCCc-hHhhhhHHHHHhhHHhcCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCCeee
Confidence 00 0 0000 122333333334444578999999999999888887777755 3 3455322
Q ss_pred --eeee-ccCCCc-eecccccc
Q 003764 499 --EYSR-LNVSNT-VMSKRKLN 516 (797)
Q Consensus 499 --~f~~-Ln~~g~-kLSKRk~~ 516 (797)
+.++ .+.+|+ |||||.++
T Consensus 201 ~~~~~~l~~ldG~~KMSKS~~n 222 (351)
T 1yi8_B 201 LSRVPRLPGLDGQAKMSKSLGN 222 (351)
T ss_dssp ECSSCSCCCTTSSSCCCTTTTC
T ss_pred eecCccccCCCCccccCCCCCC
Confidence 2344 367897 99999987
No 41
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=97.91 E-value=2e-05 Score=95.76 Aligned_cols=94 Identities=22% Similarity=0.243 Sum_probs=71.4
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCC---EEEEEeecCCch-------------hchHHHHHHHHHHHHHc
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGG---YCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWM 336 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~--~~G---~~iLRidDtDp~-------------re~~e~~~~I~e~L~wL 336 (797)
+++=-+|.|||.|||||+|+.++.+.+||. ..| .|+.-+|+.+.+ ....++.+.|.++++.|
T Consensus 36 ~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~L 115 (878)
T 2v0c_A 36 YVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLM 115 (878)
T ss_dssp EEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 555557999999999999999999988883 334 455556665532 23467889999999999
Q ss_pred CCCCC--cc--cCCchhHHHHHHHHHHHHHcCcccc
Q 003764 337 GWEPF--KI--TYTSDYFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 337 Gl~pd--~~--~~qSd~~~~~ye~a~~LI~~G~AY~ 368 (797)
|+..| .. +..++|.........+|.++|++|.
T Consensus 116 Gi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~ 151 (878)
T 2v0c_A 116 GILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYR 151 (878)
T ss_dssp TCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 98765 43 4556676677777889999999985
No 42
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=97.85 E-value=3e-05 Score=94.12 Aligned_cols=94 Identities=20% Similarity=0.291 Sum_probs=69.1
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCE---EEEEeecCCch-------------hchHHHHHHHHHHHHHc
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGY---CYLRYDDTNPE-------------AEKKEYIDHIEEIVQWM 336 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~--~~G~---~iLRidDtDp~-------------re~~e~~~~I~e~L~wL 336 (797)
+++=-+|.|||.|||||++++++.+.+||. ..|. |..-+|+...+ ....++.+.|.++|+.|
T Consensus 56 ~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~L 135 (880)
T 4arc_A 56 YCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKML 135 (880)
T ss_dssp EEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 455557999999999999999999999983 4555 44455555422 22456788999999999
Q ss_pred CCCCC--cc--cCCchhHHHHHHHHHHHHHcCcccc
Q 003764 337 GWEPF--KI--TYTSDYFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 337 Gl~pd--~~--~~qSd~~~~~ye~a~~LI~~G~AY~ 368 (797)
|+..| .. +...+|.........+|.++|++|.
T Consensus 136 Gis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~ 171 (880)
T 4arc_A 136 GFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYK 171 (880)
T ss_dssp TCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 98766 44 3344555556667789999999985
No 43
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=97.84 E-value=3e-05 Score=93.52 Aligned_cols=94 Identities=21% Similarity=0.176 Sum_probs=68.9
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEee---cCCc-------------------------------
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYD---DTNP------------------------------- 318 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar--~~~G~~iLRid---DtDp------------------------------- 318 (797)
+++--+|.|||.|||||+++.++.+.+|| ...|.-++++- +.-.
T Consensus 37 ~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~ 116 (810)
T 1wkb_A 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL 116 (810)
T ss_dssp EEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHH
T ss_pred EEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHH
Confidence 77888999999999999999999999999 56787777753 3221
Q ss_pred ------hhchHHHHHHHHHHHHHcCCCCC--cccCCch----hHHHHHHHHHHHHHcCcccc
Q 003764 319 ------EAEKKEYIDHIEEIVQWMGWEPF--KITYTSD----YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 319 ------~re~~e~~~~I~e~L~wLGl~pd--~~~~qSd----~~~~~ye~a~~LI~~G~AY~ 368 (797)
......+.+.|.+++++||+..| ..++.++ |.........+|.++|++|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~ 178 (810)
T 1wkb_A 117 WTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (810)
T ss_dssp HGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEEE
Confidence 11123455889999999998765 5544444 33334455678999999884
No 44
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=97.73 E-value=0.00044 Score=76.75 Aligned_cols=171 Identities=19% Similarity=0.269 Sum_probs=105.9
Q ss_pred eEEEEeCCCCCCcCchhHHHHHH-HHHHHHHHcCCEEEEEeecC-----Cc---hhchHHHHHHHHHHHHHcCCCCCc--
Q 003764 274 NVLTRFPPEPNGYLHIGHAKAMF-VDFGLAKERGGYCYLRYDDT-----NP---EAEKKEYIDHIEEIVQWMGWEPFK-- 342 (797)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal-~n~~~Ar~~~G~~iLRidDt-----Dp---~re~~e~~~~I~e~L~wLGl~pd~-- 342 (797)
.+.+=|.|| |.|||||...++ .+| +-..+|..+++=|-|. ++ .....+....+..++.++|++|++
T Consensus 75 ~i~sG~~PT--G~lHLGh~v~~~~~~~-lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~ 151 (392)
T 3jxe_A 75 FLYTGRGPS--GPMHIGHIIPFFATKW-LQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTF 151 (392)
T ss_dssp EEEEEECCS--SCCBHHHHHHHHHHHH-HHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEE
T ss_pred EEEeccCCC--CchhHHHHHHHHHHHH-HHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccceE
Confidence 466666654 999999999885 788 4444777665555553 22 233455666777888889999985
Q ss_pred ccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEecCC
Q 003764 343 ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ 422 (797)
Q Consensus 343 ~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d~~ 422 (797)
+.+||+... |++.+..|- |..|-.++.+.- ++. -..+.
T Consensus 152 i~~qS~~~~-~~~~~~~l~-------~~~t~~~~~~~~--~~~---~~~~~----------------------------- 189 (392)
T 3jxe_A 152 IFQNSEFTK-IYEMAIPIA-------KKINFSMAKAVF--GFT---EQSKI----------------------------- 189 (392)
T ss_dssp EEETTTSTH-HHHHHHHHH-------HHSBHHHHHHHH--CCC---TTSBH-----------------------------
T ss_pred EEECchhHH-HHHHHHHHH-------hhCCHHHHhhhh--ccC---CCCch-----------------------------
Confidence 789999876 667666552 445555544321 000 00000
Q ss_pred CCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccC-CccEEecCcccccchhHHHHHHHHhCCCCCceeeee
Q 003764 423 NDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIE-NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYS 501 (797)
Q Consensus 423 ~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~-gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~~f~ 501 (797)
| --.||..+-|..+ .. .-++|..|.|-..+-..-.-|.+.+|...|...+.+
T Consensus 190 ----------------------g--~f~YP~LQaaDil---~~~~a~~vpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~~~ 242 (392)
T 3jxe_A 190 ----------------------G--MIFFPAIQIAPTF---FERKRCLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSK 242 (392)
T ss_dssp ----------------------H--HHHHHHHHHGGGG---SSSSCEEEEEEGGGHHHHHHHHHHTGGGTSCCCEEEEEC
T ss_pred ----------------------H--HHHHHHHHHhhHH---hhcCCceeecccchHHHHHHHHHHHHHcCCCCCeeeecc
Confidence 0 0124444433332 23 256788898877665555556677888888766655
Q ss_pred ec-cCCC--ceecccccc
Q 003764 502 RL-NVSN--TVMSKRKLN 516 (797)
Q Consensus 502 ~L-n~~g--~kLSKRk~~ 516 (797)
++ .++| +|||||..+
T Consensus 243 ~l~gLdG~~~KMSKS~~n 260 (392)
T 3jxe_A 243 FVPSLTSLSGKMSASKPE 260 (392)
T ss_dssp CCCCSSCSSSCCCTTSGG
T ss_pred cccCCCCCccccccCCCC
Confidence 53 6677 599999976
No 45
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=97.56 E-value=0.00033 Score=77.62 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=53.2
Q ss_pred CCCCcCchhHHHHH-HHHHHHHHHcCCEEEEEeecC--------CchhchHHHHHHHHHHHHHcCCCCCc--ccCCchhH
Q 003764 282 EPNGYLHIGHAKAM-FVDFGLAKERGGYCYLRYDDT--------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYF 350 (797)
Q Consensus 282 sPtG~LHIGharaa-l~n~~~Ar~~~G~~iLRidDt--------Dp~re~~e~~~~I~e~L~wLGl~pd~--~~~qSd~~ 350 (797)
.|||.|||||...+ +.+| +-+.+|..+++=|.|. +++ +..+.......++-.+|++|++ +..||++.
T Consensus 90 ~PTG~lHLGh~v~~~~~~~-lQ~~~g~~v~i~I~D~~a~~~r~~~~e-~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~ 167 (386)
T 3hzr_A 90 YPQKEVALEEYITLEFARY-LQDAFNIQVIIQILDDIKVLNREATIN-EASKMSNDLMKYILAFGFNEDKTFIYTDYQYF 167 (386)
T ss_dssp CCCSSCBGGGHHHHHHHHH-HHHHHCCEEEEEECHHHHHHTTSCCHH-HHHHHHHHHHHHHHHTCCCGGGEEEEEHHHHH
T ss_pred CCCCCccHHHHHHHHHHHH-HHHhcCCeEEEEeCchHHhhcCCCCHH-HHHHHHHHHHHHHHHcCCCCcceEEEeccHHH
Confidence 67899999999999 7888 5555677777768773 332 3344555667778888999975 67889887
Q ss_pred HHHHHHHHH
Q 003764 351 QELYELAVE 359 (797)
Q Consensus 351 ~~~ye~a~~ 359 (797)
..++..+.+
T Consensus 168 ~~~~~~~~~ 176 (386)
T 3hzr_A 168 GKMYRTISL 176 (386)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 644444433
No 46
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=97.55 E-value=0.00012 Score=79.34 Aligned_cols=87 Identities=18% Similarity=0.182 Sum_probs=59.8
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Cch-hchHHHHHHHHHHHHHcCCCCCc--ccCCchhHHHH
Q 003764 282 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-AEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQEL 353 (797)
Q Consensus 282 sPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDt-----Dp~-re~~e~~~~I~e~L~wLGl~pd~--~~~qSd~~~~~ 353 (797)
.|||.|||||...++.+|..-.. |..+++-|-|. |+. .+..+....+..++.++|++|++ +.+||+..+ +
T Consensus 11 ~PTg~lHlG~~lg~l~~~~~lQ~-g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~-~ 88 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQMVDAQE-KSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKE-V 88 (322)
T ss_dssp CCSSCCBHHHHHHTHHHHHHTTT-TSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTH-H
T ss_pred CCCccccHHHHHHHHHHHHHHhc-CCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcchh-H
Confidence 57799999999988888765444 66666666663 222 23456666777888889999984 789999754 4
Q ss_pred HHHHHHHHHcCccccCCCCHHHHH
Q 003764 354 YELAVELIRRGHAYVDHQTPEEIK 377 (797)
Q Consensus 354 ye~a~~LI~~G~AY~C~cs~eel~ 377 (797)
.+.+-. +.|+++-.++.
T Consensus 89 ~el~~~-------l~~~~~~~~l~ 105 (322)
T 3tzl_A 89 MELYWI-------LSQFTPMGLLE 105 (322)
T ss_dssp HHHHHH-------HGGGCBHHHHH
T ss_pred HHHHHH-------HhccCcHHHHH
Confidence 444332 35788777664
No 47
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=97.46 E-value=5e-05 Score=91.79 Aligned_cols=94 Identities=21% Similarity=0.258 Sum_probs=66.4
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCc---h------h-----------------------
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP---E------A----------------------- 320 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar--~~~G~~iLRidDtDp---~------r----------------------- 320 (797)
+++==+|.|||.|||||+++.++.+.+|| ...|.-++++-.+|. + +
T Consensus 41 ~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~ 120 (821)
T 1ile_A 41 TVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACR 120 (821)
T ss_dssp CBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHH
T ss_pred EEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHH
Confidence 33444799999999999999999999998 446665555555551 0 0
Q ss_pred -chHHHHHHHHHHHHHcC--CCCCcccCCch--hHHHHHHHHHHHHHcCcccc
Q 003764 321 -EKKEYIDHIEEIVQWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 321 -e~~e~~~~I~e~L~wLG--l~pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~ 368 (797)
...++.+.+.+++++|| ++|+..+++++ |.........+|.++|++|.
T Consensus 121 ~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 173 (821)
T 1ile_A 121 ESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYR 173 (821)
T ss_dssp HHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeee
Confidence 11245677889999999 78887665554 33333344568999999985
No 48
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=97.45 E-value=0.00011 Score=89.67 Aligned_cols=94 Identities=20% Similarity=0.187 Sum_probs=66.9
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC----------------c-----h-------hchHH
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------P-----E-------AEKKE 324 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~--~~G~~iLRidDtD----------------p-----~-------re~~e 324 (797)
+++==+|.|||.|||||+++.++.+.+||. ..|.-++..--+| | + ....+
T Consensus 51 ~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~~~ 130 (917)
T 1ffy_A 51 ILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALE 130 (917)
T ss_dssp CEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHH
T ss_pred eeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHHHH
Confidence 555568999999999999999999999983 3555444443333 1 1 12346
Q ss_pred HHHHHHHHHHHcCCC--CCcccCCch--hHHHHHHHHHHHHHcCcccc
Q 003764 325 YIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 325 ~~~~I~e~L~wLGl~--pd~~~~qSd--~~~~~ye~a~~LI~~G~AY~ 368 (797)
+.+.+.++++.||+. |+..+++.+ |.........+|.++|++|.
T Consensus 131 ~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr 178 (917)
T 1ffy_A 131 QIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYK 178 (917)
T ss_dssp HHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEe
Confidence 788999999999994 777665554 33333344568999999985
No 49
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=97.45 E-value=0.00022 Score=86.57 Aligned_cols=94 Identities=20% Similarity=0.214 Sum_probs=70.5
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCch------------------hc-------------
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE------------------AE------------- 321 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar--~~~G~~iLRidDtDp~------------------re------------- 321 (797)
+++=-+|.|||.|||||+++.++.+.+|| ...|.-++..-.+|.- +.
T Consensus 37 ~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~ 116 (862)
T 1gax_A 37 VIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQ 116 (862)
T ss_dssp EEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHH
T ss_pred EEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHH
Confidence 55666899999999999999999999998 4578777777666621 00
Q ss_pred -hHHHHHHHHHHHHHcCCCCC--ccc--CCchhHHHHHHHHHHHHHcCcccc
Q 003764 322 -KKEYIDHIEEIVQWMGWEPF--KIT--YTSDYFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 322 -~~e~~~~I~e~L~wLGl~pd--~~~--~qSd~~~~~ye~a~~LI~~G~AY~ 368 (797)
..++.+.|.+.++.||+..| ..+ ...+|.........+|.++|++|.
T Consensus 117 ~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYr 168 (862)
T 1gax_A 117 WKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYR 168 (862)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 35778899999999998654 433 333454445556679999999985
No 50
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=97.44 E-value=0.00058 Score=75.81 Aligned_cols=81 Identities=21% Similarity=0.279 Sum_probs=55.3
Q ss_pred eEEEEeCCCCC-CcCchhHHHHHH-HHHHHHHHcCCEEEEEeecCC--------chhchHHHHHHHHHHHHHcCCCCCc-
Q 003764 274 NVLTRFPPEPN-GYLHIGHAKAMF-VDFGLAKERGGYCYLRYDDTN--------PEAEKKEYIDHIEEIVQWMGWEPFK- 342 (797)
Q Consensus 274 ~v~tRFaPsPt-G~LHIGharaal-~n~~~Ar~~~G~~iLRidDtD--------p~re~~e~~~~I~e~L~wLGl~pd~- 342 (797)
.+.+=| .|| |.|||||+..++ .+| +-+.++..+++-|-|-- ...+..++...+..++..+|++|++
T Consensus 76 ~vy~G~--~PTa~~lHlGh~v~~~~~~~-lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~kt 152 (393)
T 3hv0_A 76 YLYTGR--GPSSESLHVGHLVPFLFTKY-LQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELT 152 (393)
T ss_dssp EEEEEE--CCSSSSCBSTTHHHHHHHHH-HHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTTTE
T ss_pred EEEeCC--CCCCCCccHHHHHHHHHHHH-HHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCcce
Confidence 344445 467 689999999998 777 45555667778887731 1123445666777888889999975
Q ss_pred -ccCCchhHHHHHHHH
Q 003764 343 -ITYTSDYFQELYELA 357 (797)
Q Consensus 343 -~~~qSd~~~~~ye~a 357 (797)
+..||+....|+..+
T Consensus 153 ~i~~ns~~~~~~~~~~ 168 (393)
T 3hv0_A 153 FIFTNLEYIAELYPDI 168 (393)
T ss_dssp EEEEHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHH
Confidence 667888876554433
No 51
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=97.32 E-value=0.0016 Score=71.88 Aligned_cols=117 Identities=16% Similarity=0.245 Sum_probs=75.4
Q ss_pred cccCCCccceecCcHHHHHHhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC----ch---
Q 003764 247 IPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN----PE--- 319 (797)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDtD----p~--- 319 (797)
++|+-++. ..+++..-+-..=.|.+=+. |||.|||||...++.++ .....|..+++=|-|.. +.
T Consensus 51 i~f~hRd~------d~il~~~e~gk~~~v~sG~~--PTG~lHLGhyv~~~~~~-~lq~~~~~~~~~IaD~ha~t~~~~~~ 121 (372)
T 3a04_A 51 IIFGHRDF------DKILEAKARGERVAVLTGFM--PSGKFHFGHKLTVDQLI-YLQKNGFKVFVAIADAEAFAVRRIGR 121 (372)
T ss_dssp SEEEEESH------HHHHHHHHTTCCCEEEEEEC--CCSCCBHHHHHHHHHHH-HHHHTTCEEEEEECHHHHHHTTCCCH
T ss_pred eeeeccCH------HHHHHHHHcCCCCEEEeCcC--CCcHhHHHHHHHHHHHH-HHHhCCCeEEEEEecchhhccCCCCC
Confidence 56666665 66666544434444666565 57999999999765544 44456778887777742 21
Q ss_pred -hchHHHHHHHHHHHHHcCCCCCc--ccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHH
Q 003764 320 -AEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEY 379 (797)
Q Consensus 320 -re~~e~~~~I~e~L~wLGl~pd~--~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~ 379 (797)
.........+..++-++|++|++ +++||++...+++.+..| .|..+..+++..
T Consensus 122 ~e~~r~~~~~~~~~~lA~GlDP~kt~if~qS~~~~~~~~l~~~~-------~~~~~~~~~~~~ 177 (372)
T 3a04_A 122 EEAVRIAVEEYIANMIALGLDPKDTEFYFQTNRGTPYFRLIQLF-------SGKVTAAEMEAI 177 (372)
T ss_dssp HHHHHHHHHTTHHHHHHHTCCTTTCEEEEGGGSCHHHHHHHHHH-------TTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHcchhhhccchHHHHHHHHHH-------HhhhhHHHHhhh
Confidence 11334455556677789999985 789999877777665443 455666666543
No 52
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=97.29 E-value=0.00019 Score=88.22 Aligned_cols=94 Identities=22% Similarity=0.193 Sum_probs=65.5
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEe---ecCC--------------------------------
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRY---DDTN-------------------------------- 317 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~--~~G~~iLRi---dDtD-------------------------------- 317 (797)
+++==+|.|||.|||||+++.++.+.+||. ..|.-+|+. |.+-
T Consensus 37 ~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~ 116 (967)
T 1wz2_A 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL 116 (967)
T ss_dssp BEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHH
T ss_pred EEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHH
Confidence 556668999999999999999999999983 456555543 2221
Q ss_pred -----chhchHHHHHHHHHHHHHcCCC--CCcccCCch----hHHHHHHHHHHHHHcCcccc
Q 003764 318 -----PEAEKKEYIDHIEEIVQWMGWE--PFKITYTSD----YFQELYELAVELIRRGHAYV 368 (797)
Q Consensus 318 -----p~re~~e~~~~I~e~L~wLGl~--pd~~~~qSd----~~~~~ye~a~~LI~~G~AY~ 368 (797)
+......|.+.+.++++.||+. |+..+.+.+ |.........+|.++|++|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr 178 (967)
T 1wz2_A 117 WTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (967)
T ss_dssp HGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEE
Confidence 1112345668899999999985 556655555 33333344568999999885
No 53
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=97.25 E-value=0.00035 Score=78.50 Aligned_cols=191 Identities=19% Similarity=0.155 Sum_probs=107.4
Q ss_pred cHHHHHHhhhhc-CCeEEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Cch-----h------c
Q 003764 260 TKEVLDKHLEVT-GGNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----A------E 321 (797)
Q Consensus 260 ~~~~~~~~~~~~-~g~v~tRFaPsPtG~-LHIGharaal~n~~~Ar~~~G~~iLRidDt-----Dp~-----r------e 321 (797)
+.+-|.+.|+.. .-.+.+=| -|||. |||||.. ++.++..-...|..+++=|-|. ||. | .
T Consensus 24 ~~~~L~~~L~~~~~~~vy~G~--dPTg~sLHlGh~v-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~ 100 (432)
T 1h3f_A 24 PEEELLAKLKEGRPLTVKLGA--DPTRPDLHLGHAV-VLRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEE 100 (432)
T ss_dssp THHHHHHHHHTCSCCEEEEEE--CTTCCSCBHHHHH-HHHHHHHHHHTTCEEEEEECCCC--------------------
T ss_pred CHHHHHHHHhcCCCcEEEEcc--cCCCCCCchhhHH-HHHHHHHHHHCCCCEEEEEccceEEecCCCCcccccccCCHHH
Confidence 366777878522 22344555 56774 9999999 5778877777777887777773 442 1 2
Q ss_pred hHHHHHHHHHHHHHcCCC--CC--cccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHh
Q 003764 322 KKEYIDHIEEIVQWMGWE--PF--KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESL 397 (797)
Q Consensus 322 ~~e~~~~I~e~L~wLGl~--pd--~~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l 397 (797)
..+....|...+. .|++ |+ .+.+||+.+..++ ...+++ +.|+.|..++.+. +
T Consensus 101 i~~n~~~~~~ql~-~~ld~~p~k~~i~~nSd~~~~~~--~~~~l~----l~~~~tv~~ml~~--------------~--- 156 (432)
T 1h3f_A 101 TRENAKTYVAQAG-KILRQEPHLFELRYNSEWLEGLT--FKEVVR----LTSLMTVAQMLER--------------E--- 156 (432)
T ss_dssp -HHHHHHHHHHHT-TTSCCCTTTEEEEETHHHHTTCB--HHHHHH----HHTTSBHHHHTTS--------------H---
T ss_pred HHHHHHHHHHHHH-HHhcCCCCceEEEECCcccccCc--HHHHHH----HhCcCcHHHHHhh--------------h---
Confidence 2334444554443 5777 76 4789998754321 112222 2244454333110 0
Q ss_pred HHHH-HhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCccc
Q 003764 398 KLFE-DMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEF 476 (797)
Q Consensus 398 ~~fe-~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~ 476 (797)
-|. ++..+ ...+ .+..+|-.--+.|-...+.++++.|.|-
T Consensus 157 -~~k~r~~~~-----------------~~is---------------------~~ef~YPlLQaaDil~l~~~l~~gG~DQ 197 (432)
T 1h3f_A 157 -DFKKRYEAG-----------------IPIS---------------------LHELLYPFAQAYDSVAIRADVEMGGTDQ 197 (432)
T ss_dssp -HHHHHHHTT-----------------CCCB---------------------GGGGTHHHHHHHHHHHHTCSEEEEEGGG
T ss_pred -hHHHHhhcC-----------------CCCC---------------------ccccchhhHHhhhhhhcCccEEEechHH
Confidence 011 00000 0000 0112333333333334568999999999
Q ss_pred ccchhHHHHHHHHhCCCCCceeeeeec-cCCCc-eecccccc
Q 003764 477 ETRRASYFWLLHALGLYQPYVWEYSRL-NVSNT-VMSKRKLN 516 (797)
Q Consensus 477 ~~~t~~q~~L~~aLg~~~P~~~~f~~L-n~~g~-kLSKRk~~ 516 (797)
..|-..-.-|.+.+|...|...+.+.| ..+|+ ||||+.++
T Consensus 198 ~~ni~l~rdlarr~~~~~~~~lt~pll~gldG~~KMSKS~~n 239 (432)
T 1h3f_A 198 RFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDN 239 (432)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGTC
T ss_pred HHHHHHHHHHHHHhCCCCceEeecccccCCCCccccCcCCCC
Confidence 888887777888898766655555554 67896 99999876
No 54
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=97.17 E-value=0.0023 Score=71.88 Aligned_cols=187 Identities=13% Similarity=0.103 Sum_probs=100.4
Q ss_pred HHHHHhhhhc-CCeEEEEeCCCCC-CcCchhHHHHHH-HHHHHHHHcCCEEEEEeec----CC-c---hhchHHHHHHHH
Q 003764 262 EVLDKHLEVT-GGNVLTRFPPEPN-GYLHIGHAKAMF-VDFGLAKERGGYCYLRYDD----TN-P---EAEKKEYIDHIE 330 (797)
Q Consensus 262 ~~~~~~~~~~-~g~v~tRFaPsPt-G~LHIGharaal-~n~~~Ar~~~G~~iLRidD----tD-p---~re~~e~~~~I~ 330 (797)
+.+.+.++.. .-.+.+=| -|| |.|||||...++ ++| +-+.+|...++=|-| +. | .....+....+.
T Consensus 91 ~~l~~~l~~g~~~~vy~G~--dPTag~LHLGh~v~~~~l~~-lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~ 167 (432)
T 2ip1_A 91 TKILDLYEQGKPFFLYTGR--GPSSDSMHLGHMIPFVFTKW-LQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENA 167 (432)
T ss_dssp HHHHHHHHHTCCCEEEEEE--CCCSSCCBGGGHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEee--cCCCCCccHHHHHHHHHHHH-HHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHH
Confidence 3344445432 22455555 467 789999999876 676 344477766666666 32 2 123455666677
Q ss_pred HHHHHcCCCCCc--ccCCchhH-HHHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCc
Q 003764 331 EIVQWMGWEPFK--ITYTSDYF-QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGR 407 (797)
Q Consensus 331 e~L~wLGl~pd~--~~~qSd~~-~~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~ 407 (797)
.++-.+|++|++ +..||+.. ..+++.+..+ . -..+.+++++ ++... ...+.- +
T Consensus 168 ~~~lA~GlDp~k~~i~~nSd~~~~~~~~~~~~v-~------rm~~~~~~k~----r~~~~-~~~s~g----~-------- 223 (432)
T 2ip1_A 168 KDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRV-S------RQITGSTAKA----VFGFN-DSDCIG----K-------- 223 (432)
T ss_dssp HHHHTTTCCGGGEEEEEHHHHCSHHHHHHHHHH-H------TSCCHHHHHH----TTCCC-TTSCHH----H--------
T ss_pred HHHHHhCCCCCceEEEeCchhhhhhHHHHHHHH-H------hhhcHHHHHH----HhCCC-CCCchh----h--------
Confidence 777788999874 77899875 2344544321 0 0112222221 11000 001110 0
Q ss_pred ccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccc---cccccchhhhcc-----CCccEEecCcccccc
Q 003764 408 IEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYP---SYDYAHCIVDSI-----ENITHSLCTLEFETR 479 (797)
Q Consensus 408 ~~~g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~P---tY~fA~~VDD~~-----~gITHvlRG~E~~~~ 479 (797)
-.|| +||+-+.-.|.. .+-+++..|.|-..+
T Consensus 224 -----------------------------------------f~YPlLQAaDil~l~~d~~~~~~~~~~~lvp~G~DQ~~~ 262 (432)
T 2ip1_A 224 -----------------------------------------FHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPY 262 (432)
T ss_dssp -----------------------------------------HHTHHHHHHTTSGGGCTTTTCCCTTCCEEEEEEGGGHHH
T ss_pred -----------------------------------------hhHHHHHHHHHHHhccchhhcccCCCceEEEeccCcHHH
Confidence 0122 223322211221 347789999988777
Q ss_pred hhHHHHHHHHhCCCCCceeeeeec-cCCC--ceecccccc
Q 003764 480 RASYFWLLHALGLYQPYVWEYSRL-NVSN--TVMSKRKLN 516 (797)
Q Consensus 480 t~~q~~L~~aLg~~~P~~~~f~~L-n~~g--~kLSKRk~~ 516 (797)
-..=.-|.+.+|...|...+.++| .++| +||||+.++
T Consensus 263 i~l~Rdla~r~~~~~p~~l~~~ll~gLdG~~~KMSKS~~n 302 (432)
T 2ip1_A 263 FRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDT 302 (432)
T ss_dssp HHHHHHHHHHHTSCCCEEEEECCCCCTTC--------CGG
T ss_pred HHHHHHHHHHhCCCCceeeccccccCCCCCccccCCCCCC
Confidence 665566678899888876555553 7788 899999877
No 55
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=97.15 E-value=0.00086 Score=74.51 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=47.5
Q ss_pred CCCC-cCchhHHHHH-HHHHHHHHHcCCEEEEEeecC-------CchhchHHHHHHHHHHHHHcCCCCCc--ccCCchhH
Q 003764 282 EPNG-YLHIGHAKAM-FVDFGLAKERGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYF 350 (797)
Q Consensus 282 sPtG-~LHIGharaa-l~n~~~Ar~~~G~~iLRidDt-------Dp~re~~e~~~~I~e~L~wLGl~pd~--~~~qSd~~ 350 (797)
.||| .|||||...+ +.+| +-+.++..+++-|-|- .+..+..++...+..++-.+|++|++ +..||+..
T Consensus 86 ~PTg~~lHLGh~v~~~~~~~-lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~ 164 (395)
T 3i05_A 86 GPSSESMHMGHLIPFMFTKW-LQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYM 164 (395)
T ss_dssp CCCSSCCBGGGSHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTSEEEEEHHHHT
T ss_pred cCCCccchHHHHHHHHHHHH-HHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCHHH
Confidence 6788 7999999988 6677 4555566666666654 12223455666778888889999985 55666654
Q ss_pred H
Q 003764 351 Q 351 (797)
Q Consensus 351 ~ 351 (797)
.
T Consensus 165 ~ 165 (395)
T 3i05_A 165 G 165 (395)
T ss_dssp T
T ss_pred H
Confidence 3
No 56
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=97.11 E-value=0.009 Score=65.90 Aligned_cols=110 Identities=16% Similarity=0.162 Sum_probs=67.7
Q ss_pred HHHHHHhhhhc-CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Cch-h---chHHHH-HHH
Q 003764 261 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-A---EKKEYI-DHI 329 (797)
Q Consensus 261 ~~~~~~~~~~~-~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDt-----Dp~-r---e~~e~~-~~I 329 (797)
.+.|.++++.. .-.+.+=|-| ||.|||||-..++.++..-...|..+++=|-|. ||. + ...+.. ..+
T Consensus 21 ~~~l~~~l~~~~~~~vy~G~~P--Tg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~ 98 (375)
T 2cyc_A 21 VENLRHLFEIGAPLQHYIGFEI--SGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYF 98 (375)
T ss_dssp HHHHHHHHHHTCCCBEEEEECC--CSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTH
T ss_pred HHHHHHHHhcCCCcEEEeCCCC--CCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHH
Confidence 56677777653 3356666655 589999994446777777777777777777762 331 1 122333 444
Q ss_pred H----HHHHHcCCCCCc--ccCCchhHHHHHHHHHHHHHcCccccCCCCHHHHH
Q 003764 330 E----EIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIK 377 (797)
Q Consensus 330 ~----e~L~wLGl~pd~--~~~qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~ 377 (797)
. .++..+|++|++ +..||+..... .+..-++. +.|+++-.++.
T Consensus 99 ~~~~~~~~la~G~dp~k~~i~~qS~~~~~~-~~~~~~~~----~~~~~~~~~m~ 147 (375)
T 2cyc_A 99 KVGMEKSIEVMGGDPKKVEFVLASEILEKG-DYWQTVID----ISKNVTLSRVM 147 (375)
T ss_dssp HHHHHHHHHHTTCCGGGSEEEETHHHHTBH-HHHHHHHH----HHTTSBHHHHH
T ss_pred HHHHHHHHHHhCCCccceEEEEcchhhhhh-HHHHHHHH----HhceeEHHHHh
Confidence 4 778899999974 78999876543 22222222 24455555554
No 57
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=97.08 E-value=0.0023 Score=71.34 Aligned_cols=69 Identities=14% Similarity=0.222 Sum_probs=48.3
Q ss_pred CCCC-cCchhHHHHH-HHHHHHHHHcCCEEEEEeecCC-------chhchHHHHHHHHHHHHHcCCCCCc--ccCCchhH
Q 003764 282 EPNG-YLHIGHAKAM-FVDFGLAKERGGYCYLRYDDTN-------PEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYF 350 (797)
Q Consensus 282 sPtG-~LHIGharaa-l~n~~~Ar~~~G~~iLRidDtD-------p~re~~e~~~~I~e~L~wLGl~pd~--~~~qSd~~ 350 (797)
.||| .|||||...+ +.+| +-+.+|..+++-|-|.- ...+..++...+..++-.+|++|++ +..||+..
T Consensus 109 ~PTg~~lHLGh~v~~~~~~~-lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qs~~~ 187 (406)
T 3tze_A 109 GPSSKTMHIGHTIPFLLCKY-MQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVEAS 187 (406)
T ss_dssp CCCSSCCBGGGHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHG
T ss_pred CCCCCcccHHHHHHHHHHHH-HHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEeccHhH
Confidence 5788 7999999988 6788 55666777777777631 1123445666777788889999875 55666654
Q ss_pred H
Q 003764 351 Q 351 (797)
Q Consensus 351 ~ 351 (797)
.
T Consensus 188 ~ 188 (406)
T 3tze_A 188 H 188 (406)
T ss_dssp G
T ss_pred H
Confidence 4
No 58
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=97.07 E-value=0.0014 Score=73.79 Aligned_cols=95 Identities=22% Similarity=0.347 Sum_probs=61.2
Q ss_pred EEEEeCCCCC-CcCchhHHHHHH-HHHHHHHHcCCEEEEEeecC-----C---chhchHHHHHHHHHHHHHcCCCCCc--
Q 003764 275 VLTRFPPEPN-GYLHIGHAKAMF-VDFGLAKERGGYCYLRYDDT-----N---PEAEKKEYIDHIEEIVQWMGWEPFK-- 342 (797)
Q Consensus 275 v~tRFaPsPt-G~LHIGharaal-~n~~~Ar~~~G~~iLRidDt-----D---p~re~~e~~~~I~e~L~wLGl~pd~-- 342 (797)
+.+=| .|| |.|||||+..++ .+| +-+.++..+++-|.|- . ...+..++...+..++-.+|++|+.
T Consensus 94 vytG~--dPTagsLHLGH~v~~~~l~~-lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpekt~ 170 (451)
T 3foc_A 94 IYTGR--GPSSGALHLGHLLPFIFTKY-LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTF 170 (451)
T ss_dssp EEEEE--CCCSSCCBHHHHHHHHHHHH-HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEE
T ss_pred EEecC--CCCCCCccHHHHHHHHHHHH-HHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Confidence 44444 567 889999999888 788 5555677788888773 1 1223445556667777778999875
Q ss_pred ccCCchhHH--HHHHHHHHHHHcCccccCCCCHHHHHHH
Q 003764 343 ITYTSDYFQ--ELYELAVELIRRGHAYVDHQTPEEIKEY 379 (797)
Q Consensus 343 ~~~qSd~~~--~~ye~a~~LI~~G~AY~C~cs~eel~~~ 379 (797)
+..||+... .|++.+.+|- |..|-.++.+.
T Consensus 171 i~~nSd~~~~~~~~~~l~~L~-------r~~Tv~~m~~~ 202 (451)
T 3foc_A 171 IFINSQYLSLKNRYRFSCLVD-------RMLPISQLRAS 202 (451)
T ss_dssp EEEHHHHTTSTTHHHHHHHHH-------HTCCHHHHHHH
T ss_pred EEeCchhhcchhHHHHHHHHH-------hhCCHHHHHhh
Confidence 678888763 3455544332 33455555544
No 59
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=97.03 E-value=0.017 Score=64.85 Aligned_cols=221 Identities=12% Similarity=0.083 Sum_probs=119.3
Q ss_pred HHHHHHhhhhcCCeEEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEEeec----C-Cchh----------chHH
Q 003764 261 KEVLDKHLEVTGGNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDD----T-NPEA----------EKKE 324 (797)
Q Consensus 261 ~~~~~~~~~~~~g~v~tRFaPsPtG~-LHIGharaal~n~~~Ar~~~G~~iLRidD----t-Dp~r----------e~~e 324 (797)
.+.|.+.++...-.+.+=| -|||. |||||+. ++.++..-...|-.+++=|-| | ||.| +..+
T Consensus 21 ~e~L~~~L~~~~~~iy~G~--dPTg~sLHLGhlv-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~ 97 (432)
T 2jan_A 21 LDTLAAEAQRGPMTVYAGF--DPTAPSLHAGHLV-PLLTLRRFQRAGHRPIVLAGGATGMIGDPRDVGERSLNEADTVAE 97 (432)
T ss_dssp HHHHHHHHHHSCCEEEEEE--CCSSSSCBGGGHH-HHHHHHHHHHTTCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEee--CCCCCCcCHHHHH-HHHHHHHHHHCCCcEEEEEcCcEEEccCCcccccccCCCHHHHHH
Confidence 5567777763333444545 56795 9999966 566776666667777776655 2 4532 2234
Q ss_pred HHHHHHHHH-HHc--CCCCCc--ccCCchhHHH--HHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHh
Q 003764 325 YIDHIEEIV-QWM--GWEPFK--ITYTSDYFQE--LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESL 397 (797)
Q Consensus 325 ~~~~I~e~L-~wL--Gl~pd~--~~~qSd~~~~--~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l 397 (797)
....|.+.+ .+| |++|++ +.+||+.... +.+++.. +-|+.+-.+|.+...
T Consensus 98 n~~~~~~~~~~~La~G~dp~k~~i~~nsdw~~~~~~l~~lr~-------l~~~~tv~~m~~~~~---------------- 154 (432)
T 2jan_A 98 WTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEFLRD-------IGKHFSVNVMLARDT---------------- 154 (432)
T ss_dssp HHHHHHHHHHHHSCCSSSTTCCEEEETHHHHSSCBHHHHHHH-------TGGGCBHHHHHHSHH----------------
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEECchhcccCcHHHHHHH-------HhccCcHHHHhcchH----------------
Confidence 444444432 233 676764 6789987553 2222221 345566665543210
Q ss_pred HHHHHhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccC----CccEEecC
Q 003764 398 KLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIE----NITHSLCT 473 (797)
Q Consensus 398 ~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~----gITHvlRG 473 (797)
|.+ |+ ... |-. .+..+|-.--+.|=... +.++++-|
T Consensus 155 --~k~-------------r~----~~~--------------------~is-~~ef~YPlLQaaDil~l~~~~~~~i~~gG 194 (432)
T 2jan_A 155 --IRR-------------RL----AGE--------------------GIS-YTEFSYLLLQANDYVELHRRHGCTLQIGG 194 (432)
T ss_dssp --HHH-------------HT----STT--------------------CCB-HHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred --Hhh-------------hh----cCC--------------------Ccc-hHHHHHHHHHHHHHHHHhccCCCcEEecc
Confidence 110 00 000 000 01112222222222233 78888889
Q ss_pred cccccchhHHHHHHHHhCCCCCceeeeeec-cCCCceecccccccccccCccCCCCCc---chhhHHHHHHcCCChHHHH
Q 003764 474 LEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDP---CLMTLAGLRRRGVTSTSIN 549 (797)
Q Consensus 474 ~E~~~~t~~q~~L~~aLg~~~P~~~~f~~L-n~~g~kLSKRk~~~~v~~g~v~gWdDP---r~~tL~~lrrrG~~PeAI~ 549 (797)
.|-..|-..-.-|.+.++...|.....+.| ..+|+||||+.++..| |=++ -...+.....+ .+-..+.
T Consensus 195 ~DQ~~ni~lgrdlarr~~~~~~~~l~~plL~~ldG~KMSKS~~nsaI-------~L~d~~tsp~~i~qki~~-~~D~~v~ 266 (432)
T 2jan_A 195 ADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGGGSL-------WLDPQMTSPYAWYQYFVN-TADADVI 266 (432)
T ss_dssp STTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTBCSSSCBC-------BSSTTTSCHHHHHHHHHT-CCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCccccccccccCCCcCcCCCCCCCCeE-------EccCCCCCHHHHHHHHhc-CCchhHH
Confidence 988777766666777777666655555554 6799999999987333 3333 23445555544 4444466
Q ss_pred HHHHHh
Q 003764 550 AFVQGI 555 (797)
Q Consensus 550 ~fl~~l 555 (797)
+|+..+
T Consensus 267 ~~l~l~ 272 (432)
T 2jan_A 267 RYLRWF 272 (432)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
No 60
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=96.96 E-value=0.0054 Score=67.04 Aligned_cols=88 Identities=17% Similarity=0.171 Sum_probs=60.2
Q ss_pred HHHHHHhhhhc-CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Cc----hhchHHHHHHHH
Q 003764 261 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NP----EAEKKEYIDHIE 330 (797)
Q Consensus 261 ~~~~~~~~~~~-~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDt-----Dp----~re~~e~~~~I~ 330 (797)
.+-|++.|+.. .-.+.+=|-|| |.|||||...++.++..-...|..+++=|-|. || ..+..+....+.
T Consensus 28 ~~~L~~~L~~~~~~~vy~G~~PT--g~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~ 105 (348)
T 2j5b_A 28 LDRLKQLVDSGRIFTAYNGFEPS--GRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFI 105 (348)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCC--SSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEeccCCC--CCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHH
Confidence 55677777762 22455666555 89999995555677766666677777777662 33 223456667777
Q ss_pred HHHHHcCCCCCc--ccCCchhH
Q 003764 331 EIVQWMGWEPFK--ITYTSDYF 350 (797)
Q Consensus 331 e~L~wLGl~pd~--~~~qSd~~ 350 (797)
+++-.+|++|++ +.+||+.+
T Consensus 106 ~~~la~Gldp~k~~i~~qs~~~ 127 (348)
T 2j5b_A 106 EVFKACGINLDGTRFIWASEFI 127 (348)
T ss_dssp HHHHHTTCCGGGEEEEEHHHHH
T ss_pred HHHHHhcCCccceEEEECCHhh
Confidence 888889999974 67888864
No 61
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=96.64 E-value=0.0046 Score=68.48 Aligned_cols=91 Identities=14% Similarity=0.170 Sum_probs=60.1
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-------CchhchHHHHHHHHHHHHHcCCCCCc--ccC
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITY 345 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDt-------Dp~re~~e~~~~I~e~L~wLGl~pd~--~~~ 345 (797)
|.+=| .|||.|||||...++.+|..-.. +..+++=|-|. ||+ ...+....+..++..+|++|++ +++
T Consensus 38 i~sG~--~PTG~lHLGhyvGal~~~~~LQ~-~~~~~~~IaD~hAlt~~~~~~-~lr~~~~~~aa~~lA~GlDp~kt~if~ 113 (388)
T 3prh_A 38 IFSGI--QPSGSVTLGNYIGAMKQFVELQH-DYNSYFCIVDQHAITVPQDRL-ELRKNIRNLAALYLAVGLDPEKATLFI 113 (388)
T ss_dssp EEEEE--CCCSCCBHHHHHHTHHHHHHTTT-TSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHTTCCTTTEEEEE
T ss_pred EEEee--CCCCcchHHHHHHHHHHHHHHHc-cCcEEEEEecceeeecCCCHH-HHHHHHHHHHHHHHHhCCChhHeEEEe
Confidence 44444 56799999999988888765443 66666666663 222 3345556677788889999985 788
Q ss_pred CchhHHHHHHHHHHHHHcCccccCCCCHHHHH
Q 003764 346 TSDYFQELYELAVELIRRGHAYVDHQTPEEIK 377 (797)
Q Consensus 346 qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~ 377 (797)
||+..+ +.+++-. +.|..+-.++.
T Consensus 114 qS~v~~-~~el~w~-------l~~~~~~~~L~ 137 (388)
T 3prh_A 114 QSEVPA-HAQAGWM-------MQCVAYIGELE 137 (388)
T ss_dssp GGGSTH-HHHHHHH-------HHTTSCHHHHH
T ss_pred cccccc-hHHHHHH-------HHhhccHHHHH
Confidence 999753 4444322 34666666554
No 62
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=96.63 E-value=0.076 Score=59.38 Aligned_cols=218 Identities=16% Similarity=0.191 Sum_probs=118.9
Q ss_pred HHHHHHhhhhcCCeEEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Cch-----h------chH
Q 003764 261 KEVLDKHLEVTGGNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----A------EKK 323 (797)
Q Consensus 261 ~~~~~~~~~~~~g~v~tRFaPsPtG~-LHIGharaal~n~~~Ar~~~G~~iLRidDt-----Dp~-----r------e~~ 323 (797)
++-|.+.|+...-.+.+=| -|||. |||||.. ++.++..-...|..+++=|-|- ||. | +..
T Consensus 21 ~~~L~~~L~~~~~~iy~G~--dPTg~sLHlGh~v-~l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~ 97 (420)
T 1jil_A 21 EQGIEDLLNKEQVTLYCGA--DPTADSLHIGHLL-PFLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVD 97 (420)
T ss_dssp HHHHHHHHHHSCCEEEEEE--CCSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHH
T ss_pred HHHHHHHHcCCCCEEEEee--CCCCCCccHHHHH-HHHHHHHHHHCCCcEEEEEcCceeEecCCCccccccccCCHHHHH
Confidence 4567777764433455555 46788 9999988 5677766666677777666552 442 1 234
Q ss_pred HHHHHHHHHHHHcCCCC---C--cccCCchhHHH--HHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHH
Q 003764 324 EYIDHIEEIVQWMGWEP---F--KITYTSDYFQE--LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAES 396 (797)
Q Consensus 324 e~~~~I~e~L~wLGl~p---d--~~~~qSd~~~~--~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~ 396 (797)
+....|.+.+..+ ++| + .+..||+.... ++++ |.. +-|+.+-.+|.+. ++ ..+
T Consensus 98 ~n~~~~~~~~~~~-ld~~~~~k~~i~~ns~w~~~~~~l~~---l~~----~~~~~tv~~m~~~-----~~------~k~- 157 (420)
T 1jil_A 98 KNIEGISKQMHNI-FEFGTDHGAVLVNNRDWLGQISLISF---LRD----YGKHVGVNYMLGK-----DS------IQS- 157 (420)
T ss_dssp HHHHHHHHHHHHH-SCCSSSSSCEEEETHHHHTTCCHHHH---HHH----TGGGCCHHHHHTC-----GG------GHH-
T ss_pred HHHHHHHHHHHHH-hCCCCCCceEEEEchhhhhhccHHHH---HHH----HhccccHHHHhcc-----hh------hhh-
Confidence 5566666665555 666 4 35677776543 2222 211 2344455544321 00 000
Q ss_pred hHHHHHhhcCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccC----CccEEec
Q 003764 397 LKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIE----NITHSLC 472 (797)
Q Consensus 397 l~~fe~m~~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~----gITHvlR 472 (797)
|+ . . +-. .+-.+|-.--+.|=... +.++++-
T Consensus 158 -------------------r~--~---~--------------------~is-~~ef~YplLQaaD~l~l~~~~~~~i~~g 192 (420)
T 1jil_A 158 -------------------RL--E---H--------------------GIS-YTEFTYTILQAIDFGHLNRELNCKIQVG 192 (420)
T ss_dssp -------------------HH--T---T--------------------TCC-HHHHHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred -------------------hc--c---C--------------------Ccc-hHHHHHHHHHHHHHHHHhccCCCcEEec
Confidence 00 0 0 000 00112222222222223 6788888
Q ss_pred CcccccchhHHHHHHHHh-CCCCCceeeeeec-cCCCceecccccccccccCccCCCCCc---chhhHHHHHHcCCChHH
Q 003764 473 TLEFETRRASYFWLLHAL-GLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDP---CLMTLAGLRRRGVTSTS 547 (797)
Q Consensus 473 G~E~~~~t~~q~~L~~aL-g~~~P~~~~f~~L-n~~g~kLSKRk~~~~v~~g~v~gWdDP---r~~tL~~lrrrG~~PeA 547 (797)
|.|=..|-..=.-|.+.+ +...|.....+.| ..+|+||||+.++. | |=++ -...+.....+ .+-..
T Consensus 193 G~DQ~~ni~~grdla~r~~~~~~~~~l~~pll~~ldG~KMSKS~~na-I-------~L~d~~tsp~~i~~ki~~-~~D~~ 263 (420)
T 1jil_A 193 GSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGA-V-------WLDAEKTSPYEFYQFWIN-QSDED 263 (420)
T ss_dssp EGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTSCBTTBCSSSB-C-------BSSTTTSCHHHHHHHHHT-CCHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCeeEeecccccCCccccccCCCCCe-E-------ecCCCCCCHHHHHHHHhc-CCchh
Confidence 888777766666677788 7666655555554 67999999999762 3 3333 23455555544 44445
Q ss_pred HHHHHHHh
Q 003764 548 INAFVQGI 555 (797)
Q Consensus 548 I~~fl~~l 555 (797)
+.+|+..+
T Consensus 264 v~~~l~~~ 271 (420)
T 1jil_A 264 VIKFLKYF 271 (420)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66776654
No 63
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=96.55 E-value=0.033 Score=61.37 Aligned_cols=88 Identities=16% Similarity=0.112 Sum_probs=53.4
Q ss_pred HHHHHHhhhhc-CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Cch-h---chHHHHHHHH
Q 003764 261 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-A---EKKEYIDHIE 330 (797)
Q Consensus 261 ~~~~~~~~~~~-~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDt-----Dp~-r---e~~e~~~~I~ 330 (797)
.+.|++.|+.. .-.+.+=|.| ||.|||||..-..+++..-...|..+++=|-|. ||. + ........+.
T Consensus 44 ~~~L~~~L~~~~~~~iy~G~~P--Tg~lHlG~gvl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~ 121 (373)
T 3vgj_A 44 PDELRVKLLLKRKLICYDGFEP--SGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFI 121 (373)
T ss_dssp HHHHHHHHHHCSSCEEEEEECC--CSSCBHHHHHHHHHHHHHHHTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEeCCCC--CCCceehhhHHHHHHHHHHHHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHHHH
Confidence 56677777652 2245566655 589999993211122323344566766666652 331 1 2334555667
Q ss_pred HHHHHcCCCCCc--ccCCchhH
Q 003764 331 EIVQWMGWEPFK--ITYTSDYF 350 (797)
Q Consensus 331 e~L~wLGl~pd~--~~~qSd~~ 350 (797)
..+..+|++|++ +.+||+..
T Consensus 122 ~~~~a~G~dp~k~~i~~~S~~~ 143 (373)
T 3vgj_A 122 EVWKSCGMNMENVQFLWASEEI 143 (373)
T ss_dssp HHHHHTTCCSTTEEEEEHHHHH
T ss_pred HHHHHcCCChhheEEEeChhHH
Confidence 788899999985 67899875
No 64
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=96.47 E-value=0.023 Score=67.26 Aligned_cols=190 Identities=16% Similarity=0.155 Sum_probs=102.4
Q ss_pred HHHHHHhhhhc-CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Cch-h---chHHHHHHHH
Q 003764 261 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-A---EKKEYIDHIE 330 (797)
Q Consensus 261 ~~~~~~~~~~~-~g~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDt-----Dp~-r---e~~e~~~~I~ 330 (797)
.+.|++.|+.. .-.|.+=| .|||.|||||.....+++..-...|..+++=|-|. ||. + ........+.
T Consensus 28 ~~eL~~~L~~~~~~~vy~G~--~PTg~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~ 105 (690)
T 3p0j_A 28 ESELRNLIEKKPLIRCYDGF--EPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLI 105 (690)
T ss_dssp HHHHHHHHHHCTTEEEEEEE--CCCSCCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEeee--cCCCcchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHH
Confidence 56677777642 22455555 46789999993221223333334566666666653 221 1 2234456677
Q ss_pred HHHHHcCCCCCc--ccCCchhHHH----HHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhh
Q 003764 331 EIVQWMGWEPFK--ITYTSDYFQE----LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMR 404 (797)
Q Consensus 331 e~L~wLGl~pd~--~~~qSd~~~~----~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~ 404 (797)
.++..+|++|++ +.+||+++.. ++.....+ | +++|-.++... + +.
T Consensus 106 ~~~lA~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i---~----~~~tv~~m~~~-----~------~~----------- 156 (690)
T 3p0j_A 106 EVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDI---G----RQNTIARIKKC-----C------TI----------- 156 (690)
T ss_dssp HHHHHTTCCGGGEEEEEHHHHHTTSHHHHHHHHHHH---H----HTSCHHHHHTT-----C-------------------
T ss_pred HHHHHcCCChHHeEEEechHHHHhhHHHHHHHHHHH---H----hhCCHHHHHhh-----h------hh-----------
Confidence 788899999975 6789986543 22322222 1 12333333211 0 00
Q ss_pred cCcccCCceEEEEEecCCCCCCCcCccEEEEEecCCCCCCCCcccccccccccchhhhccCCccEEecCcccccchhHHH
Q 003764 405 NGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYF 484 (797)
Q Consensus 405 ~G~~~~g~~~lR~K~d~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~PtY~fA~~VDD~~~gITHvlRG~E~~~~t~~q~ 484 (797)
.| |.. .+ + . .+..+|-.--+.|-...+.+++..|.|-..+-..=.
T Consensus 157 ~~---------r~~----------~~-----i------~-----~g~f~YPlLQAaDil~~~ad~vpvG~DQ~~~l~l~R 201 (690)
T 3p0j_A 157 MG---------KTE----------GT-----L------T-----AAQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAR 201 (690)
T ss_dssp ------------------------CC-----C------C-----CSCSSHHHHHHHHHHHTTCSEECCBGGGHHHHHHHH
T ss_pred hh---------hcc----------CC-----C------c-----hhhHhhHHHHHHHHHhhCCCEEeccccHHHHHHHHH
Confidence 00 100 00 0 0 012233333334444567899999998776655555
Q ss_pred HHHHHhCCC-CCceeeeeec-cC-CCc-eecccccc
Q 003764 485 WLLHALGLY-QPYVWEYSRL-NV-SNT-VMSKRKLN 516 (797)
Q Consensus 485 ~L~~aLg~~-~P~~~~f~~L-n~-~g~-kLSKRk~~ 516 (797)
-|.+.+|.. .|...+.+++ .+ +|+ ||||+.++
T Consensus 202 dla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~ 237 (690)
T 3p0j_A 202 EYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPD 237 (690)
T ss_dssp HHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGG
T ss_pred HHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCC
Confidence 566778764 6765555554 56 785 99999863
No 65
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=96.46 E-value=0.0077 Score=68.46 Aligned_cols=174 Identities=15% Similarity=0.133 Sum_probs=98.9
Q ss_pred EEEEeCCCCC-CcCchhHHHHHH-HHHHHHHHcCCEEEEEeec-C------CchhchHHHHHHHHHHHHHcCCCCCc--c
Q 003764 275 VLTRFPPEPN-GYLHIGHAKAMF-VDFGLAKERGGYCYLRYDD-T------NPEAEKKEYIDHIEEIVQWMGWEPFK--I 343 (797)
Q Consensus 275 v~tRFaPsPt-G~LHIGharaal-~n~~~Ar~~~G~~iLRidD-t------Dp~re~~e~~~~I~e~L~wLGl~pd~--~ 343 (797)
+.+=| -|| |.|||||...++ .+| +-+.+|...++=|-| | -...+..++...+..++-.+|++|++ +
T Consensus 158 vy~G~--dPTag~LHLGh~v~~~~~~~-lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k~~i 234 (477)
T 1r6t_A 158 LYTGR--GPSSEAMHVGHLIPFIFTKW-LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFI 234 (477)
T ss_dssp EEEEE--CCCTTCCBGGGHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred EEEcc--cCCCCCccHHHHHHHHHHHH-HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCceEE
Confidence 44444 567 789999999987 576 444467765555544 2 12233455666677777788999975 6
Q ss_pred cCCchhHH---HHHHHHHHHHHcCccccCCCCHHHHHHHhccCCCCCCCCCChHHHhHHHHHhhcCcccCCceEEEEEec
Q 003764 344 TYTSDYFQ---ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQD 420 (797)
Q Consensus 344 ~~qSd~~~---~~ye~a~~LI~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~fe~m~~G~~~~g~~~lR~K~d 420 (797)
..||++.. .+++.+-.|-. ..+..++++. -++. ...+. -+
T Consensus 235 ~~nsd~~~~l~~~~~~~~~l~r-------~~t~~~~k~r--~~~~---~~~s~----ge--------------------- 277 (477)
T 1r6t_A 235 FSDLDYMGMSSGFYKNVVKIQK-------HVTFNQVKGI--FGFT---DSDCI----GK--------------------- 277 (477)
T ss_dssp EEHHHHGGGCTTHHHHHHHHHH-------TCBHHHHHHH--HCCC---TTSBH----HH---------------------
T ss_pred EechhhhcccHHHHHHHHHHHh-------hccHHHHHHH--hCCC---CCCCh----hh---------------------
Confidence 78888764 23333321110 0122222211 0000 00000 00
Q ss_pred CCCCCCCcCccEEEEEecCCCCCCCCcccccc---cccccch-hhhcc----CCccEEecCcccccchhHHHHHHHHhCC
Q 003764 421 MQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYP---SYDYAHC-IVDSI----ENITHSLCTLEFETRRASYFWLLHALGL 492 (797)
Q Consensus 421 ~~~~~~~~~D~V~~r~~~~~h~~~gd~~~~~P---tY~fA~~-VDD~~----~gITHvlRG~E~~~~t~~q~~L~~aLg~ 492 (797)
-.|| +||+-.. +|..+ .+-++|.+|.|-..+-..-.-|.+.+|.
T Consensus 278 ----------------------------f~YPlLQAaDil~l~~d~~~g~~~~~~~~VpvG~DQ~~~i~l~Rdla~r~~~ 329 (477)
T 1r6t_A 278 ----------------------------ISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGY 329 (477)
T ss_dssp ----------------------------HHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGTC
T ss_pred ----------------------------hhhHHHHHHHHHHhccchhhccccCCceeEeccccHHHHHHHHHHHHHHhCC
Confidence 0122 2333222 22212 3457888899888777666667788898
Q ss_pred CCCceeeeeec-cCCC--ceecccccc
Q 003764 493 YQPYVWEYSRL-NVSN--TVMSKRKLN 516 (797)
Q Consensus 493 ~~P~~~~f~~L-n~~g--~kLSKRk~~ 516 (797)
..|...+.++| ..+| +||||+.++
T Consensus 330 ~~p~~l~~pll~gLdG~~~KMSKS~~n 356 (477)
T 1r6t_A 330 PKPALLHSTFFPALQGAQTKMSASDPN 356 (477)
T ss_dssp CCCEEEEECCCEETTEEEEECCTTSTT
T ss_pred CCceeeecccccCCCCCccccCCCCCC
Confidence 88876555553 7889 899999877
No 66
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=96.16 E-value=0.047 Score=61.92 Aligned_cols=157 Identities=18% Similarity=0.230 Sum_probs=115.8
Q ss_pred HHHH-HhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHH-HHhhCCCCC---------cCchhHHHHH
Q 003764 13 LELF-LKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT-VATKYPTNA---------LVHRPTLLLY 81 (797)
Q Consensus 13 ~~~f-~~iGL~e~kaket~KN~kls~~L~~ii~~a~~~~~~dk~~g~ll~~-lat~~~~~~---------~~~~~~l~~~ 81 (797)
.+.| ...||++.-|.-++.++.++.-+++++.. +. -++...+.|.+ |...++... ..+...|+..
T Consensus 307 ~~R~~~eygls~~dA~~L~~~~~~a~~fe~~~~~-~~---~~k~~anw~~~el~~~ln~~~~~i~~~~i~p~~la~li~l 382 (482)
T 3al0_B 307 AERFMREYGLPEYDAKVLTSSKELAEFFEECVKV-VN---RPKDLSNWIMTEVLRELNERNIEITESKLTPQHFADLFKL 382 (482)
T ss_dssp HHHHHHHHSCCHHHHHHHTSSHHHHHHHHHHHHH-SC---CHHHHHHHHHTHHHHHTTTTTCCTTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHh-cC---CHHHHHHHHHHHHHHHHHHcCCCHhhcCCCHHHHHHHHHH
Confidence 3444 46999999999999999988888888664 21 25667777665 666655321 3467889999
Q ss_pred HhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHH-HHHHHHHHHHHhhhhHHHhhc--cccchhhhHHH
Q 003764 82 IVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSE-DIELTVNEVFEENKNTILELR--YRTNVGDLFAH 158 (797)
Q Consensus 82 I~~g~iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~E-qI~~~V~~~i~~~k~~~~~~r--y~~n~g~ll~~ 158 (797)
|.+|+|.+. .....+.-+-.. .-+.++.-++.|.. .+|.+ +|+++|+++|++|.+.+.+-| =...+|.+||+
T Consensus 383 i~~g~Is~~-~ak~vl~~~~~~---~~~p~~IIe~~gl~-qiSDe~el~~iV~evIa~np~~v~~~k~Gk~k~~G~lmGq 457 (482)
T 3al0_B 383 MDEGKISIK-IAKEIFPEVFET---GKMPSQIVEEKGLT-QINDEKLIEELVKKAMEQNPKAVQDYKSGKKKAAGFFVGY 457 (482)
T ss_dssp HTTTSSCTT-HHHHSHHHHHHH---CCCHHHHHHHHTCC-CCCCSSCHHHHHHHHHHTCHHHHHHHTTCCTTSTHHHHHH
T ss_pred HHcCCccHH-HHHHHHHHHHhc---CCCHHHHHHHhCCc-cCCcHHHHHHHHHHHHHhChHHHHHHhcCCHHHHHHHHHH
Confidence 999999874 455556554443 35789999999976 47877 999999999999988665522 22458999999
Q ss_pred HHhhC-CCCChhhHHHHHHHH
Q 003764 159 VRKRL-PWADPKIVKQLIDAR 178 (797)
Q Consensus 159 vr~~L-kWAd~k~vK~~vd~~ 178 (797)
|.+.. -=|||+.|.+.|.+.
T Consensus 458 VMk~tkGkADp~~V~~llke~ 478 (482)
T 3al0_B 458 VMRETKGKANPELTNRIIQKL 478 (482)
T ss_dssp HHHTTSSCSCHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHH
Confidence 97763 369999888877654
No 67
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Probab=96.15 E-value=0.07 Score=60.52 Aligned_cols=164 Identities=15% Similarity=0.171 Sum_probs=116.1
Q ss_pred HHHH-HhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHH-HHhhCCC---------CCcCchhHHHHH
Q 003764 13 LELF-LKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT-VATKYPT---------NALVHRPTLLLY 81 (797)
Q Consensus 13 ~~~f-~~iGL~e~kaket~KN~kls~~L~~ii~~a~~~~~~dk~~g~ll~~-lat~~~~---------~~~~~~~~l~~~ 81 (797)
.+.| ...||++.-|.-++.++.++.-+++++... .-++...+.|.+ |...++. -...+...|+..
T Consensus 300 ~~R~~~eygLs~~dA~~L~~~~~~a~~Fe~~v~~~----~~~k~~anw~~~el~~~ln~~~~~i~~~~i~p~~la~li~l 375 (483)
T 3ip4_B 300 KAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHG----ADVKLTSNWLMGGVNEYLNKNQVELLDTKLTPENLAGMIKL 375 (483)
T ss_dssp HHHHHHTSCCCHHHHHHHTSSHHHHHHHHHHHTTT----CCHHHHHHHHHTHHHHHHHHTTCCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHhhcCCCHHHHHHHHcCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHhhCCCCHHhcCCCHHHHHHHHHH
Confidence 3344 568999999999999988888887776532 124556665533 3332221 123568899999
Q ss_pred HhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHh--hccccchhhhHHHH
Q 003764 82 IVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILE--LRYRTNVGDLFAHV 159 (797)
Q Consensus 82 I~~g~iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~k~~~~~--~ry~~n~g~ll~~v 159 (797)
|.+|+|.+ .....-+..+-.. .-+.++.-++-|...+=.+++|+++|+++|++|.+.+.+ .+=...+|-|+|+|
T Consensus 376 i~~g~Is~-~~ak~vl~~~~~~---~~~p~~iVee~GL~qisD~~eLe~iV~eVIa~np~~v~~~k~GK~ka~gfLVGQV 451 (483)
T 3ip4_B 376 IEDGTMSS-KIAKKVFPELAAK---GGNAKQIMEDNGLVQISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQI 451 (483)
T ss_dssp HHHTSSCH-HHHHHHHHHHHHH---CCCHHHHHHTTTCCCBCCHHHHHHHHHHHHHHCHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHcCCccH-HHHHHHHHHHHhc---CCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHCHHHHHHHHccCHHHHHHHHHHH
Confidence 99999975 5555666655443 257889999999887555569999999999999887653 22233478888888
Q ss_pred Hhh-CCCCChhhHHHHHHHHHHHhcC
Q 003764 160 RKR-LPWADPKIVKQLIDARMYELLG 184 (797)
Q Consensus 160 r~~-LkWAd~k~vK~~vd~~~~~llg 184 (797)
=+. =-=|||+.|.+.+.+.+.+-|.
T Consensus 452 MK~tkGKAdP~~VnelL~e~L~~~~~ 477 (483)
T 3ip4_B 452 MKASKGQANPQLVNQLLKQELDKRLE 477 (483)
T ss_dssp HHHTTSCBCHHHHHHHHHHHHHHTCC
T ss_pred HHHhCCCCCHHHHHHHHHHHHHhHHh
Confidence 444 3359999999999888776654
No 68
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=96.14 E-value=0.013 Score=65.94 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=49.2
Q ss_pred EEEEeCCCCC-CcCchhHHHHHH-HHHHHHHHcCCEEEEEeecCC-------chhchHHHHHHHHHHHHHcCCCCCc--c
Q 003764 275 VLTRFPPEPN-GYLHIGHAKAMF-VDFGLAKERGGYCYLRYDDTN-------PEAEKKEYIDHIEEIVQWMGWEPFK--I 343 (797)
Q Consensus 275 v~tRFaPsPt-G~LHIGharaal-~n~~~Ar~~~G~~iLRidDtD-------p~re~~e~~~~I~e~L~wLGl~pd~--~ 343 (797)
+.+=| -|| |.|||||...++ .+| +-+.+|...++=|-|.. ...+..++...+..++-.+|++|++ +
T Consensus 111 vy~G~--dPTag~LHLGh~v~~~~~~~-lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~kt~i 187 (437)
T 1r6u_A 111 LYTGR--GPSSEAMHVGHLIPFIFTKW-LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFI 187 (437)
T ss_dssp EEEEE--CCCSSCCBHHHHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEE
T ss_pred EEEcc--cCCCCCccHHHHHHHHHHHH-HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccceEE
Confidence 44444 567 789999999987 566 33446776666555521 2233455666677777788999874 6
Q ss_pred cCCchhHH
Q 003764 344 TYTSDYFQ 351 (797)
Q Consensus 344 ~~qSd~~~ 351 (797)
..||+...
T Consensus 188 ~~nSd~~~ 195 (437)
T 1r6u_A 188 FSDLDYMG 195 (437)
T ss_dssp EEHHHHGG
T ss_pred Eechhhhh
Confidence 78888764
No 69
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=96.06 E-value=0.22 Score=55.63 Aligned_cols=81 Identities=7% Similarity=0.065 Sum_probs=51.4
Q ss_pred CccEEecCcccccchhHHHHHHHHh-CCCCCceeeeeec-cCCCceecccccccccccCccCCCCCc---chhhHHHHHH
Q 003764 466 NITHSLCTLEFETRRASYFWLLHAL-GLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDP---CLMTLAGLRR 540 (797)
Q Consensus 466 gITHvlRG~E~~~~t~~q~~L~~aL-g~~~P~~~~f~~L-n~~g~kLSKRk~~~~v~~g~v~gWdDP---r~~tL~~lrr 540 (797)
+.++++-|.|=..|-..=.-|.+.+ +...|.....+.| ..+|+||||+.++. | |=++ -...+.....
T Consensus 185 ~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~~lt~pll~~ldG~KMSKS~~na-I-------~L~d~~tsp~~i~qki~ 256 (419)
T 2ts1_A 185 GCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGT-I-------WLDKEKTSPYEFYQFWI 256 (419)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTSCCTTCCSSCC-C-------BSSTTTSCHHHHHHHHH
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeecccccccCCCcccccCCCCCe-E-------ecCCCCCCHHHHHHHHh
Confidence 6788888888777766666667777 7666655555554 67999999998762 2 3344 2345555554
Q ss_pred cCCChHHHHHHHHHh
Q 003764 541 RGVTSTSINAFVQGI 555 (797)
Q Consensus 541 rG~~PeAI~~fl~~l 555 (797)
+ .+-..+.+|+..+
T Consensus 257 ~-~~D~~v~~~l~l~ 270 (419)
T 2ts1_A 257 N-TDDRDVIRYLKYF 270 (419)
T ss_dssp T-CCHHHHHHHHHHH
T ss_pred c-CCchhHHHHHHHH
Confidence 4 4444566776654
No 70
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=95.88 E-value=0.058 Score=58.27 Aligned_cols=87 Identities=20% Similarity=0.273 Sum_probs=53.2
Q ss_pred HHHHHHhhhhcCCeEEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Cch-----h------chH
Q 003764 261 KEVLDKHLEVTGGNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----A------EKK 323 (797)
Q Consensus 261 ~~~~~~~~~~~~g~v~tRFaPsPtG~-LHIGharaal~n~~~Ar~~~G~~iLRidDt-----Dp~-----r------e~~ 323 (797)
.+.+.+.++...-.|.+=|- |||. |||||.. ++.++..-...|..+++=|-|. ||. | +..
T Consensus 22 ~~~l~~~l~~~~~~vy~G~~--PTg~slHlGh~l-~l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~ 98 (322)
T 2yxn_A 22 EEALAERLAQGPIALVCGFD--PTADSLHLGHLV-PLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQ 98 (322)
T ss_dssp HHHHHHHHHHSCCEEEEEEC--CSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHH
T ss_pred HHHHHHHHcCCCCEEEEeec--CCCCcccHHHHH-HHHHHHHHHHcCCcEEEEEccceeeecCCCCcccccccCCHHHHH
Confidence 56677777633334555554 5698 9999988 5777777777777777777662 332 1 233
Q ss_pred HHHHHHHHHHHH---cCCCCCc--ccCCchhH
Q 003764 324 EYIDHIEEIVQW---MGWEPFK--ITYTSDYF 350 (797)
Q Consensus 324 e~~~~I~e~L~w---LGl~pd~--~~~qSd~~ 350 (797)
+..+.|.+.+.. +|++|++ +..||+..
T Consensus 99 ~n~~~~~~~~~~~la~g~dp~k~~i~~qs~w~ 130 (322)
T 2yxn_A 99 EWVDKIRKQVAPFLDFDCGENSAIAANNYDWF 130 (322)
T ss_dssp HHHHHHHHHHGGGSCSSSGGGCCEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEecchhh
Confidence 344444444332 4777764 66777653
No 71
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=95.72 E-value=0.063 Score=58.80 Aligned_cols=97 Identities=11% Similarity=0.104 Sum_probs=49.5
Q ss_pred CccEEecCcccccchhHHHHHHHHhCCCCCceeeeeec-cCCCceecccccccccccCccCCCCCc---chhhHHHHHHc
Q 003764 466 NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDP---CLMTLAGLRRR 541 (797)
Q Consensus 466 gITHvlRG~E~~~~t~~q~~L~~aLg~~~P~~~~f~~L-n~~g~kLSKRk~~~~v~~g~v~gWdDP---r~~tL~~lrrr 541 (797)
+.++++.|.|=..+-..=.-|.+.++...|.....+.| ..+|+||||+.++. | |=++ -...+.....+
T Consensus 210 ~~~i~p~G~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~~ldG~KMSKS~~na-I-------~L~d~~tsp~~i~~ki~~ 281 (356)
T 2pid_A 210 GCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNA-V-------WLNRDKTSPFELYQFFVR 281 (356)
T ss_dssp CCCEEEEEGGGHHHHHHHHHHHHHHSSCCCEEEEECCCC-------------C-C-------BSSTTTSCHHHHHHHHHT
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcccccCCCCCe-e-------eccCCCCCHHHHHHHHHc
Confidence 78999999988877776667778888766655555554 67899999998662 2 2222 22455555544
Q ss_pred CCChHHHHHHHHHhCCCCCCccccHhhHHHHHHHhh
Q 003764 542 GVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 577 (797)
Q Consensus 542 G~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~~ 577 (797)
.+-..+.+|+..+-. ++.+.++++...+.
T Consensus 282 -~~D~~v~~~l~~~t~------~~~~~i~~l~~~~~ 310 (356)
T 2pid_A 282 -QPDDSVERYLKLFTF------LPLPEIDHIMQLHV 310 (356)
T ss_dssp -CCHHHHHHHHHHHCC------CCHHHHHHHHHHHH
T ss_pred -CCchhHHHHHHHHHc------CCchHHHHHHHHHh
Confidence 444456677765421 23345555555544
No 72
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=95.11 E-value=0.019 Score=69.33 Aligned_cols=68 Identities=15% Similarity=0.109 Sum_probs=52.4
Q ss_pred ceeeeee-ccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHHHH
Q 003764 496 YVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 574 (797)
Q Consensus 496 ~~~~f~~-Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir 574 (797)
.+|.+++ +..+|+|||||+|+ ..+...+.+. |.++++|.|++..+....+..++.+.++..++
T Consensus 577 ~v~~hg~vl~~~G~KMSKS~GN---------------vV~p~dli~~-yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~ 640 (821)
T 1ile_A 577 NVICHGLILDEKGQKMSKSKGN---------------VVDPWDIIRK-FGADALRWYIYVSAPPEADRRFGPNLVRETVR 640 (821)
T ss_dssp EEEEECCEECTTSSCCCTTTTC---------------CCCHHHHHTT-TCHHHHHHHHHHHSCSSSCEECCHHHHHHHHH
T ss_pred eEEEEeeEECCCCCCCCccCCC---------------CCCHHHHHHH-hCHHHHHHHHHhCCCCCCCcEecHHHHHHHHH
Confidence 4666776 56799999999998 3467777765 99999999999888555667888888887655
Q ss_pred Hhhhc
Q 003764 575 EELNK 579 (797)
Q Consensus 575 ~~~~~ 579 (797)
.+++.
T Consensus 641 ~~~~k 645 (821)
T 1ile_A 641 DYFLT 645 (821)
T ss_dssp HTHHH
T ss_pred HHHHH
Confidence 55543
No 73
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Probab=94.18 E-value=0.1 Score=59.16 Aligned_cols=159 Identities=18% Similarity=0.202 Sum_probs=67.8
Q ss_pred HHHH-HhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHH-HHHhhCC---------CCCcCchhHHHHH
Q 003764 13 LELF-LKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLY-TVATKYP---------TNALVHRPTLLLY 81 (797)
Q Consensus 13 ~~~f-~~iGL~e~kaket~KN~kls~~L~~ii~~a~~~~~~dk~~g~ll~-~lat~~~---------~~~~~~~~~l~~~ 81 (797)
.+.| ...||++.-|.-++.++.++.-+++++.... -++...+.|. .|...++ +-...+...|+..
T Consensus 303 ~~R~~~~ygLs~~dA~~L~~~~~~a~~fe~~~~~~~----~~k~~anw~~~el~~~ln~~~~~i~~~~i~p~~la~li~l 378 (478)
T 3h0l_B 303 FERLIKEYGLSEYEAGILVNHKEVGDFFEEAVRHFK----EPKGIVNWLINDLLGLLRDKGISIEESPVKPEHLAELVKL 378 (478)
T ss_dssp HHHHHHHTCCCHHHHHHHHHSHHHHHHHHHHHHHSC----CHHHHHHHHHHTHHHHHHHHTCCGGGCSSCHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHcCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHhCCCCHhhcCCCHHHHHHHHHH
Confidence 3344 4689999999999999999998888876522 2455555443 2322111 1124578899999
Q ss_pred HhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhc--cccchhhhHHHH
Q 003764 82 IVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELR--YRTNVGDLFAHV 159 (797)
Q Consensus 82 I~~g~iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~k~~~~~~r--y~~n~g~ll~~v 159 (797)
|.+|+|.+ .....-+..+-..+ -+.++.-++.|....=.+++|++.|+++|++|.+.+.+-| =...+|.+||+|
T Consensus 379 i~~g~Is~-~~ak~vl~~~~~~~---~~p~eIVee~gL~qisD~~el~~iV~evI~~np~~v~~~~~Gk~k~~g~lvGqV 454 (478)
T 3h0l_B 379 IKEKVIST-KIGKEVIKEMVETG---KTPSQIVEEKGLKQITDENQIKELVKKIFEKHPKEVERLKQGEEKLIGFFVGQV 454 (478)
T ss_dssp HHTTSSCH-HHHHHHHHHHHHHC---CCHHHHHHHHCC------------------------------------------
T ss_pred HHcCCccH-HHHHHHHHHHHhcC---CCHHHHHHHcCCccCCCHHHHHHHHHHHHHhChHHHHHHHccCHHHHHHHHHHH
Confidence 99999976 55556666555433 5788999999987643468999999999999887655211 223367777777
Q ss_pred Hhh-CCCCChhhHHHHHHHHH
Q 003764 160 RKR-LPWADPKIVKQLIDARM 179 (797)
Q Consensus 160 r~~-LkWAd~k~vK~~vd~~~ 179 (797)
-+. =-=|||+.|.+.|.+.+
T Consensus 455 MK~tkGkAdp~~VnelL~e~L 475 (478)
T 3h0l_B 455 MRETRGKANPQVVNKVIRELV 475 (478)
T ss_dssp ---------------------
T ss_pred HHHhCCCCCHHHHHHHHHHHH
Confidence 443 22589999888877654
No 74
>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=93.89 E-value=0.036 Score=64.60 Aligned_cols=161 Identities=18% Similarity=0.247 Sum_probs=30.3
Q ss_pred HHHHH-hcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCC------CCcCchhHHHHHHhcC
Q 003764 13 LELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPT------NALVHRPTLLLYIVSS 85 (797)
Q Consensus 13 ~~~f~-~iGL~e~kaket~KN~kls~~L~~ii~~a~~~~~~dk~~g~ll~~lat~~~~------~~~~~~~~l~~~I~~g 85 (797)
.+.|. ..|||+.-|.-++.++.+ .-+.+++.. +. -++...+.|...-..++. -...+...|+..|.+|
T Consensus 463 ~~r~~~~ygls~~~A~~l~~~~~~-d~FE~~v~~-~~---~pK~aanWL~~el~~L~~~i~~~~lt~e~la~LI~li~~g 537 (633)
T 1zq1_C 463 VERYVKEYKLDRSLAQTLVDDERD-ELFEELVSM-GV---KPSLAASILVVVLKGLRKEVPIENVTDEHIREAFQLYLEG 537 (633)
T ss_dssp HHHHHTTTCCCHHHHHHHHHTSTH-HHHHHHHHT-TC---STTHHHHHHHHTTCC-------------------------
T ss_pred HHHHHHHcCCCHHHHHHHHhchHH-HHHHHHHHh-cC---CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHcC
Confidence 34444 699999999999999875 555555543 21 245555555433222321 1235667788889988
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccccchhhhHHHHHhhCC-
Q 003764 86 KIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLP- 164 (797)
Q Consensus 86 ~iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~k~~~~~~ry~~n~g~ll~~vr~~Lk- 164 (797)
+|.. ......++.+... +..+.++.-++.|.. .+|.++|+++|+++|++|.+.+.+.. ...+|.+||+|.+..+
T Consensus 538 kIs~-~sAkevl~~~~~~--~~~~~~eIIee~gl~-QlSDeELe~iV~eVIaeNp~~V~~gk-~K~mG~lmGqVMK~tkG 612 (633)
T 1zq1_C 538 KIAK-EAFEEIFKELARN--PSKSAREVAEEKGLT-LLSEEEVTRIIEEVIQQNIEVVKAKG-MGAMGLIMGRVMAKVRG 612 (633)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccH-HHHHHHHHHHhcc--CCCCHHHHHHHhCcc-cCCHHHHHHHHHHHHHhChHHHhhcC-HhHHHHHHHHHHHHhCC
Confidence 8876 2333333322221 234556777777864 57899999999999999877555522 2348888888876643
Q ss_pred CCChhhHHHHHHHHHHHhc
Q 003764 165 WADPKIVKQLIDARMYELL 183 (797)
Q Consensus 165 WAd~k~vK~~vd~~~~~ll 183 (797)
=|||+.|.+.|.+.+...+
T Consensus 613 KADpk~VnelLke~L~~~~ 631 (633)
T 1zq1_C 613 KADGKLVSQIVRRKLQEIS 631 (633)
T ss_dssp -------------------
T ss_pred CCCHHHHHHHHHHHHhhhh
Confidence 5999999888887765433
No 75
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=93.26 E-value=0.097 Score=57.00 Aligned_cols=93 Identities=18% Similarity=0.114 Sum_probs=58.8
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC----Cc--hhchHHHHHHHHHHHHHcCCCCCc--ccC
Q 003764 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NP--EAEKKEYIDHIEEIVQWMGWEPFK--ITY 345 (797)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDt----Dp--~re~~e~~~~I~e~L~wLGl~pd~--~~~ 345 (797)
.|.+=| .|||.|||||...++-+|..-.. +..+++=|-|. ++ .....+....+..++..+|++|++ +.+
T Consensus 8 ~v~sG~--~PTG~lHLGhy~g~l~~~~~lQ~-~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~ 84 (341)
T 3sz3_A 8 IVLSGV--QPSGELSIGNYLGALRQWQQMQD-DYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFV 84 (341)
T ss_dssp EEEEEE--CSSSCCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEE
T ss_pred EEEeCc--CCCCcccHHHHHHHHHHHHHHHh-cCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEe
Confidence 355555 46699999999988877753333 34555555553 21 133455666777888889999985 788
Q ss_pred CchhHHHHHHHHHHHHHcCccccCCCCHHHHH
Q 003764 346 TSDYFQELYELAVELIRRGHAYVDHQTPEEIK 377 (797)
Q Consensus 346 qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~ 377 (797)
||+..+ ..+..-. +.|.++.-++.
T Consensus 85 qS~v~~-~~el~~~-------l~~~~~~~~l~ 108 (341)
T 3sz3_A 85 QSHVPE-HAQLGWV-------LNCYTQMGELS 108 (341)
T ss_dssp GGGCTH-HHHHHHH-------HHTTSCHHHHH
T ss_pred ccchhh-hHHHHHH-------HHhhccHHHHH
Confidence 998753 3332211 25666666665
No 76
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=92.70 E-value=0.11 Score=56.80 Aligned_cols=91 Identities=19% Similarity=0.136 Sum_probs=57.7
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-------CchhchHHHHHHHHHHHHHcCCCCCc--ccC
Q 003764 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITY 345 (797)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~~~Ar~~~G~~iLRidDt-------Dp~re~~e~~~~I~e~L~wLGl~pd~--~~~ 345 (797)
+.+=| .|||.|||||...++-+|..- +.+..+++=|-|. || ....+....+..++..+|++|++ +++
T Consensus 18 i~sG~--~PTG~lHLGh~vg~l~~~~~l-Q~~~~~~~~iaD~hA~t~~~~~-~~~~~~~~~~~~~~lA~GlDp~k~~if~ 93 (346)
T 3n9i_A 18 VFSGA--QPSGELTIGNYMGALRQWVQM-QDDYDCIYCIVDLHAITARQDP-ALLRKRTLDTLALYLACGIDPKKSTIFV 93 (346)
T ss_dssp EEEEE--CSCSCCBHHHHHHTHHHHHTT-TTTSEEEEEECHHHHTTSCCCH-HHHHHHHHHHHHHHHHHTCCTTTSEEEE
T ss_pred EEECc--CCCCcccHHHHHHHHHHHHHH-HhhCcEEEEEecceeecCCCCH-HHHHHHHHHHHHHHHHcCCCccceEEEe
Confidence 44444 467999999999888787432 2345566656553 33 23445566677788889999985 788
Q ss_pred CchhHHHHHHHHHHHHHcCccccCCCCHHHHH
Q 003764 346 TSDYFQELYELAVELIRRGHAYVDHQTPEEIK 377 (797)
Q Consensus 346 qSd~~~~~ye~a~~LI~~G~AY~C~cs~eel~ 377 (797)
||+..+ ..+..-- +.|.++.-++.
T Consensus 94 qS~v~~-~~el~~~-------l~~~~~~~~l~ 117 (346)
T 3n9i_A 94 QSHVPE-HSQLSWA-------LNCYTYFGELS 117 (346)
T ss_dssp GGGCTH-HHHHHHH-------HHTTSBHHHHH
T ss_pred cccccc-chHHHHH-------HHHHhhHHHHH
Confidence 998754 3332211 35666665554
No 77
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=92.13 E-value=0.21 Score=60.25 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=47.5
Q ss_pred CCcee-eeeeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHH
Q 003764 494 QPYVW-EYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (797)
Q Consensus 494 ~P~~~-~f~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 572 (797)
.|..| +++++..+|+|||||+|+. .++..+.+. |.++++|.|++..+....+..++.+.++.+
T Consensus 634 ~pk~v~~~G~v~~~G~KMSKS~GNv---------------v~p~dli~~-yGaDalR~~ll~~~~~~~d~~fs~~~~~~~ 697 (810)
T 1wkb_A 634 WPKGIAVNGFGTLEGQKMSKSKGNV---------------LNFIDAIEE-NGADVVRLYIMSLAEHDSDFDWRRKEVGKL 697 (810)
T ss_dssp SCCEEEEECCEEETTBCCCTTTTCC---------------CBHHHHHHH-HCHHHHHHHHHHHCCTTCCEEECHHHHHHH
T ss_pred cccEEEEEeEEEeCCeehhhcCCCc---------------CCHHHHHHH-cChHHHHHHHHhcCCCCCCcccCHHHHHHH
Confidence 35555 4688888999999999983 466677765 889999999986665556667777777654
No 78
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=91.91 E-value=0.033 Score=64.77 Aligned_cols=156 Identities=21% Similarity=0.264 Sum_probs=25.2
Q ss_pred HHHHH-hcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCC-------CCcCchhHHHHHHhc
Q 003764 13 LELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPT-------NALVHRPTLLLYIVS 84 (797)
Q Consensus 13 ~~~f~-~iGL~e~kaket~KN~kls~~L~~ii~~a~~~~~~dk~~g~ll~~lat~~~~-------~~~~~~~~l~~~I~~ 84 (797)
.+.|. ..|||+.-|.-++.++.+ .-+.+++.. +. -++...+.|......++. -...+...|+..|.+
T Consensus 451 ~~r~~~~ygls~~~A~~l~~~~~~-~~fe~~~~~-~~---~~K~aaNWL~~el~~Ln~~~i~i~~lt~e~la~LI~li~~ 525 (619)
T 2d6f_C 451 KERIMRDYGLSEDLASQLVKRNLV-DEFEALTEF-RV---DTTVIASLLAYTLRELRREGHDVDGLGLDELRDAIKLLEV 525 (619)
T ss_dssp HHHHHHTTCCCHHHHHHHHHTTCT-TTC------------CCHHHHHTTTTHHHHHTC----------------------
T ss_pred HHHHHHHcCCCHHHHHHHHcCcHH-HHHHHHHHh-cC---CHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHc
Confidence 44454 689999999999888764 455555433 11 234444433222222221 223567788899998
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccccchhhhHHHHHhhCC
Q 003764 85 SKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLP 164 (797)
Q Consensus 85 g~iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~k~~~~~~ry~~n~g~ll~~vr~~Lk 164 (797)
|+|.. .... +|+.......-+..+.-++.|-. .+|.++|+++|+++|++|.+.+.+.+ ...+|.+||+|.+..+
T Consensus 526 gkIs~-esAk---evl~~L~e~e~~~~eIIee~gl~-QlSDeELe~iV~eVIaeNp~~V~~gk-~K~mG~lmGqVMK~tk 599 (619)
T 2d6f_C 526 GKISK-DALR---DIVACMADEGLAAEDAARKLNLL-LLAEDEIESIIQEIVEGNLDMISERG-MGAMGPLMGQAMGRLR 599 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CchhH-HHHH---HHHHHHHhcCCCHHHHHHHhCcc-cCCHHHHHHHHHHHHHhChHHHhhcC-HhHHHHHHHHHHHHhc
Confidence 98876 2333 33322211234667777777764 47899999999999999877555522 2348888888876644
Q ss_pred -CCChhhHHHHHHHHH
Q 003764 165 -WADPKIVKQLIDARM 179 (797)
Q Consensus 165 -WAd~k~vK~~vd~~~ 179 (797)
=|||+.|.+.|.+.+
T Consensus 600 GKADpk~VnelLke~L 615 (619)
T 2d6f_C 600 GRADGKVVNRILREKI 615 (619)
T ss_dssp ----------------
T ss_pred CCCCHHHHHHHHHHHH
Confidence 589998888877665
No 79
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=91.84 E-value=0.29 Score=60.26 Aligned_cols=62 Identities=15% Similarity=0.068 Sum_probs=46.9
Q ss_pred Ccee-eeeeccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHH
Q 003764 495 PYVW-EYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (797)
Q Consensus 495 P~~~-~f~~Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 572 (797)
|..| ++|++..+|+|||||+|| ..+...+..+ |.++++|.|++..+....+..++.+.++.+
T Consensus 635 pk~v~~~G~v~~~G~KMSKS~GN---------------vv~p~d~i~~-yGaDalR~~ll~~~~~~~d~~fs~~~~~~~ 697 (967)
T 1wz2_A 635 PKGIAVNGFGTLEGQKMSKSKGN---------------VLNFIDAIEE-NGADVVRLYIMSLAEHDSDFDWRRKEVGKL 697 (967)
T ss_dssp CCCEEEECCEEESSSCCCTTTCC---------------CCBHHHHHHT-TCHHHHHHHHHHHCCTTCCEEECHHHHHHH
T ss_pred cceEEEeeEEeeCCEEccccccC---------------CCCHHHHHHH-hChHHHHHHHHhCCCCCCCcccCHHHHHHH
Confidence 4444 568887899999999998 3466777765 999999999987666556667777666654
No 80
>1ng6_A Hypothetical protein YQEY; structural genomics, domain GATB/YQEY, PFAM02637, DUF186, PSI, protein structure initiative; 1.40A {Bacillus subtilis} SCOP: a.182.1.1
Probab=91.37 E-value=0.54 Score=45.15 Aligned_cols=61 Identities=18% Similarity=0.338 Sum_probs=45.6
Q ss_pred HHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccccchhhhHHHHHhhCC-CCChhhHHHHHHHH
Q 003764 112 EFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLP-WADPKIVKQLIDAR 178 (797)
Q Consensus 112 ~Fe~~cGVGv~vT~EqI~~~V~~~i~~~k~~~~~~ry~~n~g~ll~~vr~~Lk-WAd~k~vK~~vd~~ 178 (797)
+.-++.|- ..+|+++|++.|.++|+++.+ .+ ...+|.+||.|.+.++ =|||+.|...|.+.
T Consensus 85 ~iie~~~~-~qlsd~el~~iV~evi~~~~~----~g-~k~~G~vmG~vmk~~~GkAD~~~v~~lvk~~ 146 (148)
T 1ng6_A 85 DILEVYLP-EQLSEEELRTIVNETIAEVGA----SS-KADMGKVMGAIMPKVKGKADGSLINKLVSSQ 146 (148)
T ss_dssp HHHGGGSC-CCCCHHHHHHHHHHHHHHTTC----CS-GGGHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHhCc-ccCCHHHHHHHHHHHHHHCcc----cC-HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44455553 468999999999999999875 33 3458999998876533 39999998877654
No 81
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=90.35 E-value=0.31 Score=59.57 Aligned_cols=60 Identities=13% Similarity=0.035 Sum_probs=43.6
Q ss_pred ceeeeeecc-CCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHH
Q 003764 496 YVWEYSRLN-VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (797)
Q Consensus 496 ~~~~f~~Ln-~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 572 (797)
.++.+|++. .+|.|||||+|+. .+...+.+. |.++++|.|+++ +-...+..++.+.++..
T Consensus 581 ~v~~hG~V~d~~G~KMSKSlGNv---------------V~P~dvi~~-yGaDalR~~lls-~~~~~D~~fs~~~l~~~ 641 (917)
T 1ffy_A 581 FLLSHGFVMDGEGKKMSKSLGNV---------------IVPDQVVKQ-KGADIARLWVSS-TDYLADVRISDEILKQT 641 (917)
T ss_dssp EEEEECCEECTTSCCCCSSSSCC---------------CCHHHHHHH-TCHHHHHHHHHT-SCTTSCEECCHHHHHHH
T ss_pred ceeEeeeEEcCCCcCcccccCCc---------------CChHHHHHh-CCHHHHHHHHhc-cCCCCCcccCHHHHHHH
Confidence 356678766 5999999999983 456666664 899999999997 44344556777666543
No 82
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=89.90 E-value=0.26 Score=59.86 Aligned_cols=61 Identities=20% Similarity=0.122 Sum_probs=45.7
Q ss_pred ceeeeee-ccCCCceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHH
Q 003764 496 YVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (797)
Q Consensus 496 ~~~~f~~-Ln~~g~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 572 (797)
.+|-+++ ++.+|+|||||+|+. .+...+.++ |.++|+|.|++..+....+..++.+.++..
T Consensus 514 ~v~~hG~vld~~G~KMSKSlGNv---------------IdP~dli~~-yGaDalR~~ll~~~~~~~D~~fs~~~l~~~ 575 (862)
T 1gax_A 514 TVLLHGLVLDEKGQKMSKSKGNV---------------IDPLEMVER-YGADALRFALIYLATGGQDIRLDLRWLEMA 575 (862)
T ss_dssp EEEEECCEECTTSCBCCTTTTCC---------------CCHHHHHHH-HCHHHHHHHHHHHCCTTCCEECCHHHHHHH
T ss_pred EEEEeeeEEcCCCCCccccCCCC---------------CCHHHHHHH-cChHHHHHHHHhcCCCCCCCccCHHHHHHH
Confidence 4556666 468999999999983 455666664 889999999998766666667777777654
No 83
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=89.67 E-value=0.063 Score=64.62 Aligned_cols=153 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHH-HHHHhhCCC----CCcCchhHHHHHHhcCCCCCH
Q 003764 16 FLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLL-YTVATKYPT----NALVHRPTLLLYIVSSKIKTP 90 (797)
Q Consensus 16 f~~iGL~e~kaket~KN~kls~~L~~ii~~a~~~~~~dk~~g~ll-~~lat~~~~----~~~~~~~~l~~~I~~g~iks~ 90 (797)
|...||++.-|.-++.++.++.-++++.. +. -++...|.| ..|...++. -...+...|+..|.+|+|.+.
T Consensus 688 ~~eyGLs~~dA~vL~~~~~ladyFE~v~~--~~---~pk~aANWl~~eL~~~Ln~~~~~itp~~LaeLi~LI~~g~IS~k 762 (851)
T 2hz7_A 688 LLGLGASEGDARTIARDPALLAFVGGAAP--GD---TFAQVASWTVNELVAGLRAGEVKVRAADLAPLAEGVASGQLSAR 762 (851)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHcCCCHHHHHHHHCCHHHHHHHHHHHh--cC---CHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCccHH
Confidence 57899999999999999888888877742 11 234444443 233433332 234678899999999999874
Q ss_pred HhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHH-HHHHHHHHHHHhhhhHHHhhc--cccchhhhHHHHHhhC-CCC
Q 003764 91 AQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSE-DIELTVNEVFEENKNTILELR--YRTNVGDLFAHVRKRL-PWA 166 (797)
Q Consensus 91 ~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~E-qI~~~V~~~i~~~k~~~~~~r--y~~n~g~ll~~vr~~L-kWA 166 (797)
.....++-+-+. .-+.++.-++.|... ||.+ +|+++|+++|++|.+.+.+-| =...+|-|+|+|=+.. ==|
T Consensus 763 -~AK~Vl~~m~~~---~~~p~eIVee~GL~q-ISD~~eLe~iV~eVIa~Np~~Ve~yr~GK~ka~gfLVGQVMK~tkGKA 837 (851)
T 2hz7_A 763 -IAREALARAAAS---GDAPLTIIEREGLNA-GLSAEALQQVVAQVIAANPDKAEAYRGGKTALLGFFTGQVMRATAGKA 837 (851)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -HHHHHHHHHHhc---CCCHHHHHHHcCCCc-CCCHHHHHHHHHHHHHHCHHHHHHHHcccHhHHHHHHHHHHHHhCCCC
Confidence 555566655432 356788888899775 5654 899999999999988665511 1223566666653322 248
Q ss_pred ChhhHHHHHHHH
Q 003764 167 DPKIVKQLIDAR 178 (797)
Q Consensus 167 d~k~vK~~vd~~ 178 (797)
||+.|.+.|.+.
T Consensus 838 nP~~VnelL~ek 849 (851)
T 2hz7_A 838 DPQALAAALKDA 849 (851)
T ss_dssp ------------
T ss_pred CHHHHHHHHHHH
Confidence 888888776654
No 84
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=89.27 E-value=0.81 Score=54.24 Aligned_cols=73 Identities=15% Similarity=0.087 Sum_probs=51.1
Q ss_pred EeCCCCCCcCchhHHHHHHH--HHHHHHHcCCEEEEEeecC-----Cc----hhchHHHHHHHHHHHHHcCCCCC-cccC
Q 003764 278 RFPPEPNGYLHIGHAKAMFV--DFGLAKERGGYCYLRYDDT-----NP----EAEKKEYIDHIEEIVQWMGWEPF-KITY 345 (797)
Q Consensus 278 RFaPsPtG~LHIGharaal~--n~~~Ar~~~G~~iLRidDt-----Dp----~re~~e~~~~I~e~L~wLGl~pd-~~~~ 345 (797)
=|-| |||.||+||+..++. +...--..|+..++=|-|. |+ ..+...+......++..+|+++. ++.+
T Consensus 386 ~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d~k~~fv~ 464 (690)
T 3p0j_A 386 MWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPSSVKIVT 464 (690)
T ss_dssp EECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCCTTSEEEE
T ss_pred EecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCeEEEE
Confidence 3778 999999999999865 3222233588888888876 33 12334555667778899999863 5788
Q ss_pred CchhHH
Q 003764 346 TSDYFQ 351 (797)
Q Consensus 346 qSd~~~ 351 (797)
+|+...
T Consensus 465 ~S~~~~ 470 (690)
T 3p0j_A 465 ENEVIL 470 (690)
T ss_dssp HHHHHH
T ss_pred CCchhc
Confidence 998544
No 85
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=82.60 E-value=1.7 Score=52.83 Aligned_cols=48 Identities=17% Similarity=0.027 Sum_probs=36.4
Q ss_pred eecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHH
Q 003764 509 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (797)
Q Consensus 509 kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 572 (797)
|||||+|| ..+...+.++ |.+.++|.|++..+.-..+..++.+.++.+
T Consensus 639 KMSKSkGN---------------vVdP~diIek-YGADalRl~ll~~~~~~~dl~~s~~~ie~a 686 (880)
T 4arc_A 639 KMSKSKNN---------------GIDPQVMVER-YGADTVRLFMMFASPADMTLEWQESGVEGA 686 (880)
T ss_dssp ECCTTTTC---------------CCCHHHHHHH-HCHHHHHHHHHHSSCTTSCEECCHHHHHHH
T ss_pred cccCcCCC---------------CCCHHHHHHH-cCchHHHHHHHhcCCCCCCcccCHHHHHHH
Confidence 99999998 3466777776 999999999998865555556666666544
No 86
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=73.76 E-value=9.9 Score=41.96 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=35.2
Q ss_pred HHHHHHhhhhcCCeEEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEEeec
Q 003764 261 KEVLDKHLEVTGGNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDD 315 (797)
Q Consensus 261 ~~~~~~~~~~~~g~v~tRFaPsPtG~-LHIGharaal~n~~~Ar~~~G~~iLRidD 315 (797)
.+.|++.++...-.+.+=|- |||. |||||.. ++.++..-...|..++.=|-|
T Consensus 53 ~e~l~~ll~~~~~~vy~G~d--PTg~sLHlGhlv-~l~~l~~lQ~~G~~~~~lIgD 105 (392)
T 1y42_X 53 KEHIAELMRTRRIGAYVGID--PTAPSLHVGHLL-PLMPLFWMYLEGYKAFTLIGG 105 (392)
T ss_dssp HHHHHHHHHHCCCEEEEEEC--CCSSSCBGGGHH-HHHHHHHHHHHTCEEEEEECT
T ss_pred HHHHHHHHcCCCCEEEEeec--CCCCCccHHHHH-HHHHHHHHHHcCCcEEEEEcC
Confidence 56777777544444555554 6698 9999999 567776666666666666655
No 87
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=73.69 E-value=6.6 Score=47.77 Aligned_cols=49 Identities=12% Similarity=0.021 Sum_probs=37.5
Q ss_pred ceecccccccccccCccCCCCCcchhhHHHHHHcCCChHHHHHHHHHhCCCCCCccccHhhHHHH
Q 003764 508 TVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (797)
Q Consensus 508 ~kLSKRk~~~~v~~g~v~gWdDPr~~tL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 572 (797)
.|||||+||. .+...+.++ |.+.++|.|++..+-...+..++.+.++..
T Consensus 636 ~KMSKSkGNv---------------VdP~diI~~-yGADalRl~ll~~~~~~~D~~fs~~~v~~~ 684 (878)
T 2v0c_A 636 AVMSKSKGNG---------------VMVGPFVKE-QGADIARITILFAAPPENEMVWTEEGVQGA 684 (878)
T ss_dssp EECSGGGTCC---------------CBHHHHHHH-SCHHHHHHHHHHHSCTTSCEEECHHHHHHH
T ss_pred HHhhccCCCc---------------ccHHHHHHH-cCccHHHHHHhccCCCCCCceeCHHHHHHH
Confidence 8999999983 456677765 899999999998766556667777666544
No 88
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=54.56 E-value=39 Score=32.06 Aligned_cols=47 Identities=19% Similarity=0.405 Sum_probs=39.6
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHc-CCCeeeCHHHHHHHHHHH
Q 003764 89 TPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNEV 135 (797)
Q Consensus 89 s~~Ql~aA~kyl~~~~~~~id~~~Fe~~c-GVGv~vT~EqI~~~V~~~ 135 (797)
+..++.+|++.+-.+..+.|+.++|...+ -.|..+|+++|.+.++.+
T Consensus 82 ~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~~~~~ei~~l~~~~ 129 (176)
T 2lhi_A 82 SEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREV 129 (176)
T ss_dssp HHHHHHHHHHHHCSSCSSSBCHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCcccchHHHHHHHHhh
Confidence 45679999999977777899999999876 468899999999988765
No 89
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=53.99 E-value=21 Score=33.31 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=33.9
Q ss_pred CCChhHHHHHHHhcCCCchhHHHHhhCHHHHHHHHHHHHHcc
Q 003764 6 KGDKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAA 47 (797)
Q Consensus 6 ~~~~~~~~~~f~~iGL~e~kaket~KN~kls~~L~~ii~~a~ 47 (797)
....+.+.+.+..+||+..+....+.++.+...+..-...+.
T Consensus 103 ~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~ 144 (184)
T 4dvc_A 103 PKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQ 144 (184)
T ss_dssp CSSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 345667888999999999999999999998888776655443
No 90
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=53.97 E-value=20 Score=30.03 Aligned_cols=42 Identities=14% Similarity=0.336 Sum_probs=36.2
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHH
Q 003764 87 IKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEV 135 (797)
Q Consensus 87 iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~ 135 (797)
..|..||.+|++-+ +.+.+-|+.+++.. .+|+|||...|+.+
T Consensus 6 ~~~~eel~eAFr~f-~dg~G~It~~eLr~------~lt~eevd~~i~~~ 47 (75)
T 1h8b_A 6 TDTAEQVIASFRIL-ASDKPYILAEELRR------ELPPDQAQYCIKRM 47 (75)
T ss_dssp CSTHHHHHHHHHHH-TTSCSSBCHHHHHH------HSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHH-hcCCCCcCHHHHHh------cCCHHHHHHHHHhc
Confidence 45889999999988 66667899999999 59999999998873
No 91
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Probab=48.64 E-value=99 Score=29.18 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=40.1
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHc-----CCCeeeCHHHHHHHHHHHHHh
Q 003764 89 TPAQLEAAFSFFASTGSENFEVDEFEEAC-----GVGVEVSSEDIELTVNEVFEE 138 (797)
Q Consensus 89 s~~Ql~aA~kyl~~~~~~~id~~~Fe~~c-----GVGv~vT~EqI~~~V~~~i~~ 138 (797)
+...+..+++.+-.+..+.|+.++|.+.+ ..|..+|++++++.+..++..
T Consensus 109 ~~~~l~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~ 163 (207)
T 2ehb_A 109 VHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQ 163 (207)
T ss_dssp HHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHcccccCHHHHHHHHHHHHHH
Confidence 45668889988876666789999999886 457889999999988876655
No 92
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=47.34 E-value=53 Score=29.65 Aligned_cols=49 Identities=22% Similarity=0.360 Sum_probs=39.2
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHH
Q 003764 87 IKTPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (797)
Q Consensus 87 iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cG-VGv~vT~EqI~~~V~~~ 135 (797)
..+...+..|++.+-....+.|+.++|...+. .|..+|+++|.+.+..+
T Consensus 79 ~~~~~~l~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~ 128 (148)
T 2lmt_A 79 TDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREA 128 (148)
T ss_dssp TTTHHHHHHHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHHh
Confidence 34567899999999877778899999988754 46789999998877654
No 93
>2p12_A Hypothetical protein DUF402; APC7392, beta-barrel, rhodococcus SP. RHA1, structural genom 2, protein structure initiative; 1.63A {Rhodococcus SP} SCOP: b.175.1.1
Probab=41.27 E-value=34 Score=33.74 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=40.0
Q ss_pred CCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccccchhhhHHHHHhh---CCCCC
Q 003764 108 FEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKR---LPWAD 167 (797)
Q Consensus 108 id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~k~~~~~~ry~~n~g~ll~~vr~~---LkWAd 167 (797)
+|++||++++.-|+ ||+|+.+.+++..-.- .+.|.+.+|. +++=|... |-|++
T Consensus 120 lDeDEL~~A~~~Gl-Is~e~ae~Alr~a~~~-v~~i~~~g~d-----l~~Wl~~~g~~l~w~~ 175 (176)
T 2p12_A 120 LDVDELMEAHTTGL-LDTATAEQAILTATTA-IDGIAAHGHD-----LGRWLASIGMPIDWRG 175 (176)
T ss_dssp ECHHHHHHHHHTTS-SCHHHHHHHHHHHHHH-HHHHHHTTTC-----HHHHHHHTTCCCCCCC
T ss_pred ecHHHHHHHHHcCC-CCHHHHHHHHHHHHHH-HHHHHHccCC-----HHHHHHhCCCcceeCC
Confidence 79999999999998 9999999999877665 3446555554 45555544 88885
No 94
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=40.62 E-value=64 Score=36.12 Aligned_cols=47 Identities=17% Similarity=0.427 Sum_probs=36.6
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHH
Q 003764 89 TPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (797)
Q Consensus 89 s~~Ql~aA~kyl~~~~~~~id~~~Fe~~cG-VGv~vT~EqI~~~V~~~ 135 (797)
+..+|..|++.+-....+.|+.++|.+.+- +|..+|++||.+.++++
T Consensus 373 ~eeeLreAFk~fDkDgdG~IS~eELr~vL~~lGe~LSdeEIdeLfke~ 420 (440)
T 3u0k_A 373 SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 420 (440)
T ss_dssp -CHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 457788999988766667899999987653 46789999998877654
No 95
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=40.22 E-value=14 Score=32.31 Aligned_cols=45 Identities=18% Similarity=0.366 Sum_probs=36.1
Q ss_pred HhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHH
Q 003764 91 AQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (797)
Q Consensus 91 ~Ql~aA~kyl~~~~~~~id~~~Fe~~cG-VGv~vT~EqI~~~V~~~ 135 (797)
.++..|++.+-.+..+.|+.++|..++. .|+.+|++||.+.++++
T Consensus 36 ~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~ 81 (100)
T 2lv7_A 36 EEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRL 81 (100)
T ss_dssp HHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 4577888888777778899999988764 47889999998887754
No 96
>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A
Probab=39.84 E-value=1.8e+02 Score=28.08 Aligned_cols=50 Identities=18% Similarity=0.328 Sum_probs=40.8
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHc-----CCCeeeCHHHHHHHHHHHHHh
Q 003764 89 TPAQLEAAFSFFASTGSENFEVDEFEEAC-----GVGVEVSSEDIELTVNEVFEE 138 (797)
Q Consensus 89 s~~Ql~aA~kyl~~~~~~~id~~~Fe~~c-----GVGv~vT~EqI~~~V~~~i~~ 138 (797)
+...+..|++.+-.+..+.|+.++|...+ ..|..+|++++++.+..++..
T Consensus 120 ~~~~l~~~F~~~D~d~~G~Is~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~ 174 (226)
T 2zfd_A 120 IDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEE 174 (226)
T ss_dssp HHHHHHHHHHHHCTTSSSSEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 45678889988876666789999999987 568899999999998876654
No 97
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=38.47 E-value=32 Score=31.94 Aligned_cols=49 Identities=29% Similarity=0.352 Sum_probs=41.4
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHH
Q 003764 86 KIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEV 135 (797)
Q Consensus 86 ~iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~ 135 (797)
...+...+..+++.+-.+..+.|+.++|...+. |..+|++++...+..+
T Consensus 118 ~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~-~~~~~~~~~~~~~~~~ 166 (191)
T 3khe_A 118 LLLSRERLLAAFQQFDSDGSGKITNEELGRLFG-VTEVDDETWHQVLQEC 166 (191)
T ss_dssp HHCCHHHHHHHHHHHCTTCSSEECHHHHHHHTT-SSCCCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHCCCCcCcCCHHHHHHHHc-cCCCCHHHHHHHHHHh
Confidence 345667889999988766667899999999999 9999999998887765
No 98
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=38.06 E-value=35 Score=31.84 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=39.5
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHHHHHHHc-CCCeeeCHHHHHHHHHHH
Q 003764 87 IKTPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNEV 135 (797)
Q Consensus 87 iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~c-GVGv~vT~EqI~~~V~~~ 135 (797)
..+..+|..|++.+-....+.|+.++|.+.+ -+|..+|++||.+.++.+
T Consensus 81 ~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l~~~~ 130 (159)
T 3i5g_C 81 GTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFC 130 (159)
T ss_dssp TCCHHHHHHHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 4456789999999977777889999998875 357889999998887654
No 99
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=37.55 E-value=1.6e+02 Score=25.51 Aligned_cols=46 Identities=30% Similarity=0.487 Sum_probs=37.0
Q ss_pred HHhHHHHHHHHHhcCCCCCCHHHHHHHcC--CCeeeCHHHHHHHHHHH
Q 003764 90 PAQLEAAFSFFASTGSENFEVDEFEEACG--VGVEVSSEDIELTVNEV 135 (797)
Q Consensus 90 ~~Ql~aA~kyl~~~~~~~id~~~Fe~~cG--VGv~vT~EqI~~~V~~~ 135 (797)
...+..|++.+-.+..+.|+.++|...+. .|..+|++++...+..+
T Consensus 87 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 134 (153)
T 3ox6_A 87 VKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDV 134 (153)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 46688888888666667899999998865 57889999998887765
No 100
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=36.46 E-value=60 Score=27.32 Aligned_cols=61 Identities=11% Similarity=0.239 Sum_probs=44.2
Q ss_pred CchhHHHHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHc-CCCeeeCHHHHHHHHHHH
Q 003764 73 VHRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNEV 135 (797)
Q Consensus 73 ~~~~~l~~~I~~g~iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~c-GVGv~vT~EqI~~~V~~~ 135 (797)
.+...+...+.. -.+..++..+++.+-.+..+.|+.++|...+ .+|..+|++++.+.++.+
T Consensus 13 ~~~~~~~~~~~~--~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~ 74 (94)
T 2kz2_A 13 GENLYFQSLMKD--TDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 74 (94)
T ss_dssp CCTHHHHHHHCC--CSCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHhcC--CCHHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 344555555433 3467889999998877766789999998765 346788999988877654
No 101
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=35.63 E-value=1.6e+02 Score=27.63 Aligned_cols=25 Identities=16% Similarity=0.041 Sum_probs=19.5
Q ss_pred CChhHHHHHHHhcCCCchhHHHHhh
Q 003764 7 GDKSEILELFLKIGLDDRTAKNTIA 31 (797)
Q Consensus 7 ~~~~~~~~~f~~iGL~e~kaket~K 31 (797)
-..+++-.++..+|+++...+++.+
T Consensus 16 l~~~el~~~~~~~~~~~~~i~~~f~ 40 (207)
T 2d8n_A 16 LSKEILEELQLNTKFSEEELCSWYQ 40 (207)
T ss_dssp CCHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3566788889999999888877654
No 102
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=34.48 E-value=72 Score=28.27 Aligned_cols=61 Identities=15% Similarity=-0.026 Sum_probs=43.4
Q ss_pred HHHHHHhcCCCCCHHhHHHHHHHHHhcC-CCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhh
Q 003764 77 TLLLYIVSSKIKTPAQLEAAFSFFASTG-SENFEVDEFEEACGVGVEVSSEDIELTVNEVFEEN 139 (797)
Q Consensus 77 ~l~~~I~~g~iks~~Ql~aA~kyl~~~~-~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~ 139 (797)
.+++-|.+..-.|...++.+|..+..+. ...-+.==|--.. |...|||.|-+.|.++-.+|
T Consensus 17 ~lv~~I~~~~~~~E~e~d~ll~~fe~iteHP~gSDLIfyP~~--~~e~SPEgIv~~IKeWRa~n 78 (94)
T 3u43_A 17 EFVKKICRAEGATEEDDNKLVREFERLTEHPDGSDLIYYPRD--DREDSPEGIVKEIKEWRAAN 78 (94)
T ss_dssp HHHHHHHHTCCSSHHHHHHHHHHHHHHHCCTTTTHHHHSCCT--TSCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCCccCeeeeCCC--CCCCCHHHHHHHHHHHHHHc
Confidence 3477888887789999999998876542 1222222232222 78999999999999998875
No 103
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=34.37 E-value=1.6e+02 Score=27.26 Aligned_cols=47 Identities=15% Similarity=0.132 Sum_probs=39.1
Q ss_pred HHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHH
Q 003764 90 PAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFE 137 (797)
Q Consensus 90 ~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~ 137 (797)
...+..|++.+-.+..+.|+.++|...+. |..+|++++.+.+..+=.
T Consensus 107 ~~~~~~~F~~~D~d~~G~I~~~El~~~l~-~~~~~~~~~~~~~~~~d~ 153 (180)
T 3mse_B 107 STFLKAAFNKIDKDEDGYISKSDIVSLVH-DKVLDNNDIDNFFLSVHS 153 (180)
T ss_dssp -CHHHHHHHHHCTTCSSCBCHHHHHHHTT-TSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHc-CCCCCHHHHHHHHHHhhh
Confidence 36788999988766667899999999999 899999999988876543
No 104
>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular traffic, protein transport; 2.10A {Homo sapiens} SCOP: a.222.1.1 PDB: 1txu_A
Probab=32.84 E-value=77 Score=32.97 Aligned_cols=74 Identities=15% Similarity=0.269 Sum_probs=54.7
Q ss_pred CCCchhHHHHHHHHHhhCCCCCcCchhHHHHHHhcCCCC-CHH-----hHHHHHHHHHhcCCC--CCCHHHHHHHcCCCe
Q 003764 50 DGCERRIGNLLYTVATKYPTNALVHRPTLLLYIVSSKIK-TPA-----QLEAAFSFFASTGSE--NFEVDEFEEACGVGV 121 (797)
Q Consensus 50 ~~~dk~~g~ll~~lat~~~~~~~~~~~~l~~~I~~g~ik-s~~-----Ql~aA~kyl~~~~~~--~id~~~Fe~~cGVGv 121 (797)
.+.|.=.-.|+|-+...-+++...+..+|-.++..+++. ... ++.||+.|+++.... .++.++|++... |-
T Consensus 187 ~~ADd~LP~Liyvvika~~~~l~s~l~yI~~F~~~~~l~~GE~gY~lttl~aAv~fI~~l~~~~L~i~~~ef~~~~~-~~ 265 (274)
T 2ot3_A 187 ASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMS-GQ 265 (274)
T ss_dssp BCHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCTTTTTSSHHHHHHHHHHHHHHHHHHCCTGGGTCCHHHHHHHHT-TS
T ss_pred CCHHHHHHHHHHHHHHcCcchHHHHHHHHHHHcCcccccCCHHHHHHHHHHHHHHHHHhCCHHhcCCCHHHHHHHHh-hc
Confidence 456777888999998776666666778888888777764 333 589999999976533 588899998876 44
Q ss_pred eeC
Q 003764 122 EVS 124 (797)
Q Consensus 122 ~vT 124 (797)
+..
T Consensus 266 ~~~ 268 (274)
T 2ot3_A 266 TSP 268 (274)
T ss_dssp CCC
T ss_pred cCC
Confidence 333
No 105
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=32.76 E-value=1.6e+02 Score=24.62 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=39.0
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCC----CeeeCHHHHHHHHHHH
Q 003764 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACGV----GVEVSSEDIELTVNEV 135 (797)
Q Consensus 88 ks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGV----Gv~vT~EqI~~~V~~~ 135 (797)
.+..++..|++.+-.+..+.|+.++|...+.. |..+|++++...+..+
T Consensus 39 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (109)
T 3fs7_A 39 KTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAG 90 (109)
T ss_dssp CCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHHHHHHHHh
Confidence 46788999999887777788999999987642 7889999998877654
No 106
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=32.37 E-value=1.5e+02 Score=30.47 Aligned_cols=60 Identities=12% Similarity=0.252 Sum_probs=43.0
Q ss_pred ChhHHHHHHHh--cCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCc--h-------hHHHHHHHHHhhCC
Q 003764 8 DKSEILELFLK--IGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCE--R-------RIGNLLYTVATKYP 68 (797)
Q Consensus 8 ~~~~~~~~f~~--iGL~e~kaket~KN~kls~~L~~ii~~a~~~~~~d--k-------~~g~ll~~lat~~~ 68 (797)
.|...++.|+. .-+..+...|+-+||.+...+.+.....|++ ++. | ..|..-|.||.++-
T Consensus 11 ~~~~Ql~~F~~~L~~FA~kH~~eI~~dp~fR~~F~~mc~siGVD-Plas~kg~ws~~lG~gdfy~eLavqIv 81 (234)
T 3cuq_A 11 QMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVD-PLASGKGFWSEMLGVGDFYYELGVQII 81 (234)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCC-TTSCTTSHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHHcCCC-cccCCcchhhhhcCcchHHHHHHHHHH
Confidence 34444554543 2345577899999999999999999999995 332 2 25788899987653
No 107
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=32.24 E-value=35 Score=32.67 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=43.0
Q ss_pred hhHHHHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCC---CeeeCHHHHHHHHHHH
Q 003764 75 RPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGV---GVEVSSEDIELTVNEV 135 (797)
Q Consensus 75 ~~~l~~~I~~g~iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGV---Gv~vT~EqI~~~V~~~ 135 (797)
..++.-...-....+...+..|++.+-....+.|+.++|.+.++- |..+|++++.+.+..+
T Consensus 113 ~EF~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~~~~~~~~~l~~~~ 176 (197)
T 3pm8_A 113 TDFLAATIDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEV 176 (197)
T ss_dssp HHHHHTTCCHHHHCSHHHHHHHHHHHCTTCSSEECHHHHHHHHC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCCCCHHHHHHHHHHH
Confidence 344433333334456678899999887766678999999998864 6678888888877765
No 108
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=31.44 E-value=1.1e+02 Score=27.34 Aligned_cols=48 Identities=13% Similarity=0.411 Sum_probs=37.1
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHH
Q 003764 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (797)
Q Consensus 88 ks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cG-VGv~vT~EqI~~~V~~~ 135 (797)
.+...+..|++.+-.+..+.|+.++|...+. +|..+|++++...+..+
T Consensus 84 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 132 (156)
T 1wdc_B 84 DSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEA 132 (156)
T ss_dssp CCHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHCcCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhc
Confidence 4567899999887666667899999987753 56778999988777653
No 109
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=31.30 E-value=60 Score=27.39 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=38.8
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCC----CeeeCHHHHHHHHHHH
Q 003764 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACGV----GVEVSSEDIELTVNEV 135 (797)
Q Consensus 88 ks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGV----Gv~vT~EqI~~~V~~~ 135 (797)
.+..++..|++.+-.+..+.|+.++|...+.. |..+|++++...+..+
T Consensus 38 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (108)
T 2pvb_A 38 KSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADG 89 (108)
T ss_dssp SCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHh
Confidence 35678899999887766678999999988743 7889999998887765
No 110
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=30.22 E-value=3.2e+02 Score=24.96 Aligned_cols=129 Identities=11% Similarity=0.152 Sum_probs=62.2
Q ss_pred CCChhHHHHHHHhcCCCchhHHHHhhC-------HHH-HHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCCCCcCchhH
Q 003764 6 KGDKSEILELFLKIGLDDRTAKNTIAN-------NKV-TANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHRPT 77 (797)
Q Consensus 6 ~~~~~~~~~~f~~iGL~e~kaket~KN-------~kl-s~~L~~ii~~a~~~~~~dk~~g~ll~~lat~~~~~~~~~~~~ 77 (797)
+-..+++-.+....|++++..+++.+. ..+ ...|..++...+.. ..+...-.-++...-.-.........+
T Consensus 7 ~l~~~el~~~~~~~~~~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~~~~~-~~~~~~~~~~f~~~D~d~~G~i~~~ef 85 (190)
T 2l2e_A 7 KLSQDQLQDLVRSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPF-GDPSAFAEYVFNVFDADKNGYIDFKEF 85 (190)
T ss_dssp CSCHHHHHHHHHHHCSCSHHHHHHHHHHHHHSCCCEECHHHHHHHHHHHCCC-SCHHHHHHHHHHHHCSSSTTCEEHHHH
T ss_pred cCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCC-CCccHHHHHHHHHhcCCCCCeEeHHHH
Confidence 345566777777788888877766542 111 12233333333221 111111111222221111111222233
Q ss_pred HHHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCC-----C--------eeeCHHHHHHHHHHH
Q 003764 78 LLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGV-----G--------VEVSSEDIELTVNEV 135 (797)
Q Consensus 78 l~~~I~~g~iks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGV-----G--------v~vT~EqI~~~V~~~ 135 (797)
+.-.-.-+.-.+...+..+++-+-.+..+.|+.++|...+.- | -..+.+++.+....+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~ 156 (190)
T 2l2e_A 86 ICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMM 156 (190)
T ss_dssp HHHHTTSSCSCSHHHHHHHHHHHCTTSCSCBCHHHHHHHHHHHHHHHHHHSCCCSSCCCTHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHhHccCCCCCcCcHHHHHHHHHHHHHHhccccCcccccccHHHHHHHHHHHh
Confidence 322222233345677888888776555567888888876532 1 235566666555543
No 111
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=30.19 E-value=1.5e+02 Score=28.91 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=19.1
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHc
Q 003764 89 TPAQLEAAFSFFASTGSENFEVDEFEEAC 117 (797)
Q Consensus 89 s~~Ql~aA~kyl~~~~~~~id~~~Fe~~c 117 (797)
+...+..+++.+-.+..+.|+.++|...+
T Consensus 123 ~~~~l~~~F~~~D~d~dG~Is~~E~~~~l 151 (224)
T 1s1e_A 123 VHEKLRWTFNLYDINKDGYINKEEMMDIV 151 (224)
T ss_dssp HHHHHHHHHHHHCTTCCSEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCeECHHHHHHHH
Confidence 45567777776655555667777777665
No 112
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=28.95 E-value=68 Score=27.03 Aligned_cols=48 Identities=10% Similarity=0.194 Sum_probs=38.9
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCC----CeeeCHHHHHHHHHHH
Q 003764 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACGV----GVEVSSEDIELTVNEV 135 (797)
Q Consensus 88 ks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGV----Gv~vT~EqI~~~V~~~ 135 (797)
....++..+++.+-.+..+.|+.++|...+.- |..+|++++...+..+
T Consensus 39 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 90 (110)
T 1pva_A 39 MSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAA 90 (110)
T ss_dssp SCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHHh
Confidence 35678899999887776688999999988753 7889999988877765
No 113
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=27.66 E-value=1.2e+02 Score=26.12 Aligned_cols=43 Identities=9% Similarity=0.241 Sum_probs=35.9
Q ss_pred HhHHHHHHHHHhcCC-CCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHH
Q 003764 91 AQLEAAFSFFASTGS-ENFEVDEFEEACGVGVEVSSEDIELTVNEVFE 137 (797)
Q Consensus 91 ~Ql~aA~kyl~~~~~-~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~ 137 (797)
..|..+++|+..|.. .+++.+++-+.+| +|+..+....++...
T Consensus 3 ~~i~~~~~~i~~~~~~~~~~~~~lA~~~~----~S~~~l~r~fk~~~G 46 (107)
T 2k9s_A 3 NRVREACQYISDHLADSNFDIASVAQHVC----LSPSRLSHLFRQQLG 46 (107)
T ss_dssp HHHHHHHHHHHHTSSCSSCCHHHHHHHTT----SCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHHC----CCHHHHHHHHHHHHC
Confidence 568899999999986 7899999999999 677887777776643
No 114
>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A*
Probab=27.34 E-value=1.2e+02 Score=31.30 Aligned_cols=66 Identities=21% Similarity=0.302 Sum_probs=49.0
Q ss_pred CCCchhHHHHHHHHHhhCCCCCcCchhHHHHHHhcCCCCCHH-----hHHHHHHHHHhcCCC--CCCHHHHHH
Q 003764 50 DGCERRIGNLLYTVATKYPTNALVHRPTLLLYIVSSKIKTPA-----QLEAAFSFFASTGSE--NFEVDEFEE 115 (797)
Q Consensus 50 ~~~dk~~g~ll~~lat~~~~~~~~~~~~l~~~I~~g~iks~~-----Ql~aA~kyl~~~~~~--~id~~~Fe~ 115 (797)
.+.|.=.-.|+|-+...-+++...+..+|-.++....+.... ++.||+.|+++.... .++.++|++
T Consensus 184 ~~ADd~LP~Liyvvika~~~~L~s~l~yI~~f~~~~~l~gE~gY~lt~l~aA~~fI~~l~~~~L~i~~~ef~~ 256 (267)
T 2efe_A 184 PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAKSISLDEAEFEK 256 (267)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHTCCTTTTTCCHHHHHH
T ss_pred CChhHHHHHHHHHHHhcCcccHHHHHHHHHHHcCccccCCHHHHHHHHHHHHHHHHHhCCHhhCCCCHHHHHH
Confidence 456888889999999777666666778888888877776543 489999999975433 366666665
No 115
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=27.26 E-value=2e+02 Score=26.34 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=30.9
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-----CCe--------eeCHHHHHHHHHHH
Q 003764 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACG-----VGV--------EVSSEDIELTVNEV 135 (797)
Q Consensus 88 ks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cG-----VGv--------~vT~EqI~~~V~~~ 135 (797)
.+...+..+++.+-.+..+.|+.++|...+. +|. .++.+++.++...+
T Consensus 96 ~~~~~~~~~f~~~D~d~~G~i~~~ef~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~ 156 (190)
T 1fpw_A 96 TLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLM 156 (190)
T ss_dssp CSTHHHHHHHHHHCSSCSSEEEHHHHHHHHHHHHTTSCSTTSSSCCCCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHHHhccccCcccccchHHHHHHHHHHHh
Confidence 4567788888877655556788888887653 232 25556666555544
No 116
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=27.19 E-value=2.3e+02 Score=24.43 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=38.2
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHHH
Q 003764 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEVF 136 (797)
Q Consensus 88 ks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cG-VGv~vT~EqI~~~V~~~i 136 (797)
.....+..+++.+-.+..+.|+.++|...+. +|..+|++++...+..+=
T Consensus 76 ~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 125 (142)
T 2bl0_C 76 TSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITE 125 (142)
T ss_dssp CCHHHHHHHHHHTCCSSCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 3567888999888666667899999988763 567789999988877653
No 117
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=26.90 E-value=55 Score=26.83 Aligned_cols=46 Identities=13% Similarity=0.278 Sum_probs=35.5
Q ss_pred HhHHHHHHHHH-hcCCC-CCCHHHHHHHcC------CCeeeCHHHHHHHHHHHH
Q 003764 91 AQLEAAFSFFA-STGSE-NFEVDEFEEACG------VGVEVSSEDIELTVNEVF 136 (797)
Q Consensus 91 ~Ql~aA~kyl~-~~~~~-~id~~~Fe~~cG------VGv~vT~EqI~~~V~~~i 136 (797)
.++..+++.+- .+..+ .|+.++|...+. +|..+|++++.+.+..+=
T Consensus 9 ~~l~~~F~~~D~~d~~G~~I~~~el~~~l~~~~~~~~g~~~~~~~~~~~~~~~D 62 (93)
T 1k2h_A 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELD 62 (93)
T ss_dssp HHHHHHHHHHHTTSSCCSSCCHHHHHHHHHHHTHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCcCccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 45778888776 46667 899999988765 678899999888777653
No 118
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=26.77 E-value=3.5e+02 Score=24.52 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=22.1
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHc
Q 003764 89 TPAQLEAAFSFFASTGSENFEVDEFEEAC 117 (797)
Q Consensus 89 s~~Ql~aA~kyl~~~~~~~id~~~Fe~~c 117 (797)
+...+..+++.+-.+..+.|+.++|...+
T Consensus 90 ~~~~~~~~f~~~D~d~~G~i~~~e~~~~~ 118 (183)
T 1s6c_A 90 VHEKLRWTFNLYDINKDGYINKEEMMDIV 118 (183)
T ss_dssp HHHHHHHHHHHHCTTCSSCEEHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence 55678888887766666778888888876
No 119
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=26.48 E-value=52 Score=31.46 Aligned_cols=50 Identities=22% Similarity=0.396 Sum_probs=41.0
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHcC--CCeeeCHHHHHHHHHHHHHh
Q 003764 89 TPAQLEAAFSFFASTGSENFEVDEFEEACG--VGVEVSSEDIELTVNEVFEE 138 (797)
Q Consensus 89 s~~Ql~aA~kyl~~~~~~~id~~~Fe~~cG--VGv~vT~EqI~~~V~~~i~~ 138 (797)
....+..|++.+-.+..+.|+.++|...+. +|..+|++++.+.|..++..
T Consensus 111 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~s~~~~~~l~~~~~~~ 162 (208)
T 2ct9_A 111 RSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQE 162 (208)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCEEcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 456788888888766667899999999886 47889999999998777755
No 120
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=26.41 E-value=93 Score=27.14 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=37.5
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHc-CCCeeeCHHHHHHHHHHH
Q 003764 88 KTPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNEV 135 (797)
Q Consensus 88 ks~~Ql~aA~kyl~~~~~~~id~~~Fe~~c-GVGv~vT~EqI~~~V~~~ 135 (797)
.+...+..|++.+-.+..+.|+.++|...+ .+|..+|++++...+..+
T Consensus 73 ~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~ 121 (143)
T 3j04_B 73 DPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREA 121 (143)
T ss_dssp CCHHHHHHHHTTSCSSSCCCCCTTTHHHHHHTSSSCCCHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 345778888887766666789999999877 457889999998877655
No 121
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=26.19 E-value=1e+02 Score=33.94 Aligned_cols=51 Identities=14% Similarity=0.015 Sum_probs=30.9
Q ss_pred CccEEecCcccccchhHHHHHHHHh-----------------CCCCCceeeeeec-cCCCceecccccc
Q 003764 466 NITHSLCTLEFETRRASYFWLLHAL-----------------GLYQPYVWEYSRL-NVSNTVMSKRKLN 516 (797)
Q Consensus 466 gITHvlRG~E~~~~t~~q~~L~~aL-----------------g~~~P~~~~f~~L-n~~g~kLSKRk~~ 516 (797)
+.++++-|.|=..|-..=.-|.+.+ ++..|...+.++| ..+|+||||+.++
T Consensus 232 ~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~n 300 (392)
T 1y42_X 232 GVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGN 300 (392)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSS
T ss_pred CccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCC
Confidence 5778888887755544333333322 2234544444553 6799999999876
No 122
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=26.02 E-value=41 Score=31.15 Aligned_cols=47 Identities=23% Similarity=0.348 Sum_probs=38.7
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHc-CCCeeeCHHHHHHHHHH
Q 003764 88 KTPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNE 134 (797)
Q Consensus 88 ks~~Ql~aA~kyl~~~~~~~id~~~Fe~~c-GVGv~vT~EqI~~~V~~ 134 (797)
.+...|..|++.+-....+.|+.++|...+ .+|..+|+++|.+.++.
T Consensus 82 ~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~ei~~~~~~ 129 (153)
T 3i5g_B 82 DPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKD 129 (153)
T ss_dssp CCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHSSSSCCCHHHHHHHHTT
T ss_pred ccHHHHHHHHhccccCCCCeEeHHHHHHHHHHcCCcCCHHHHHHHHHH
Confidence 456789999999877777889999998876 46889999999877654
No 123
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=25.44 E-value=1.5e+02 Score=25.34 Aligned_cols=42 Identities=10% Similarity=0.145 Sum_probs=34.6
Q ss_pred HhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHH
Q 003764 91 AQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVF 136 (797)
Q Consensus 91 ~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i 136 (797)
..|..+++|+.++...+++.+++-+.+| +|+..+....++..
T Consensus 2 ~~i~~~~~~i~~~~~~~~~~~~lA~~~~----~s~~~l~r~fk~~~ 43 (108)
T 3mn2_A 2 NAVRQVEEYIEANWMRPITIEKLTALTG----ISSRGIFKAFQRSR 43 (108)
T ss_dssp HHHHHHHHHHHHHTTSCCCHHHHHHHHT----CCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcccCCCCHHHHHHHHC----CCHHHHHHHHHHHh
Confidence 4688999999999878899999999999 57777777776653
No 124
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=24.40 E-value=98 Score=24.72 Aligned_cols=41 Identities=17% Similarity=0.378 Sum_probs=29.8
Q ss_pred HHhHHHHHHHHHhcC--CCCCC-HHHHHHHcCCCeeeCHHHHHHHHHH
Q 003764 90 PAQLEAAFSFFASTG--SENFE-VDEFEEACGVGVEVSSEDIELTVNE 134 (797)
Q Consensus 90 ~~Ql~aA~kyl~~~~--~~~id-~~~Fe~~cGVGv~vT~EqI~~~V~~ 134 (797)
...|+.|++||.+-. ..+++ .-+|-+.=| +|.|||..+.+.
T Consensus 10 e~li~~Av~FL~dp~V~~sp~~~K~~FL~sKG----Lt~~EI~~Al~r 53 (54)
T 3ff5_A 10 EPLIATAVKFLQNSRVRQSPLATRRAFLKKKG----LTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHHHCTTGGGSCHHHHHHHHHHTT----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChhhhcCCHHHHHHHHHHcC----CCHHHHHHHHHc
Confidence 467889999997421 12333 467999888 899999998764
No 125
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=24.04 E-value=2.1e+02 Score=24.84 Aligned_cols=60 Identities=12% Similarity=0.041 Sum_probs=41.2
Q ss_pred HHHHHHhcCCCCCHHhHHHHHHHHHhcC-CCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhh
Q 003764 77 TLLLYIVSSKIKTPAQLEAAFSFFASTG-SENFEVDEFEEACGVGVEVSSEDIELTVNEVFEEN 139 (797)
Q Consensus 77 ~l~~~I~~g~iks~~Ql~aA~kyl~~~~-~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~ 139 (797)
.+++.|.+..-.+.. ++.++..+..+. +...+.==|--.. |...|||+|-+.|.+|-.+|
T Consensus 17 ~lv~~I~~~~~~~e~-~d~ll~~f~~~teHP~gSDLIfyP~~--~~e~spE~Iv~~ik~wRa~~ 77 (85)
T 1gxg_A 17 KIIEDIINCEGDEKK-QDDNLEHFISVTEHPSGSDLIYYPEG--NNDGSPEAVIKEIKEWRAAN 77 (85)
T ss_dssp HHHHHHHHTSSSSHH-HHHHHHHHHHTTCCTTTTHHHHSCCT--TCCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCchh-HHHHHHHHHHhcCCCCcCceeecCCC--CCCCCHHHHHHHHHHHHHHc
Confidence 357888888866666 888888776553 2223333333333 58899999999999998774
No 126
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=23.96 E-value=70 Score=26.92 Aligned_cols=48 Identities=15% Similarity=0.236 Sum_probs=38.2
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCC----CeeeCHHHHHHHHHHH
Q 003764 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACGV----GVEVSSEDIELTVNEV 135 (797)
Q Consensus 88 ks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGV----Gv~vT~EqI~~~V~~~ 135 (797)
....++..+++.+-.+..+.|+.++|...+.. |..+|++++...+..+
T Consensus 38 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (108)
T 1rro_A 38 MSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAA 89 (108)
T ss_dssp SCHHHHHHHHHHHCTTCSSEECTHHHHTGGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHh
Confidence 35678889999887666678999999988743 7889999988877754
No 127
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=23.73 E-value=2.8e+02 Score=25.31 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=19.3
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHc
Q 003764 88 KTPAQLEAAFSFFASTGSENFEVDEFEEAC 117 (797)
Q Consensus 88 ks~~Ql~aA~kyl~~~~~~~id~~~Fe~~c 117 (797)
.+...+..+++.+-.+..+.|+.++|...+
T Consensus 96 ~~~~~~~~~f~~~D~d~~G~i~~~e~~~~l 125 (190)
T 1g8i_A 96 TLDEKLRWAFKLYDLDNDGYITRNEMLDIV 125 (190)
T ss_dssp CHHHHHHHHHHHHCTTCSSEEEHHHHHHHH
T ss_pred CHHHHHHHHHHhhcCCCCCeECHHHHHHHH
Confidence 345567777776655555567777777664
No 128
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=23.35 E-value=1.6e+02 Score=25.80 Aligned_cols=47 Identities=11% Similarity=0.178 Sum_probs=38.2
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHc-CCCeeeCHHHHHHHHHHH
Q 003764 89 TPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNEV 135 (797)
Q Consensus 89 s~~Ql~aA~kyl~~~~~~~id~~~Fe~~c-GVGv~vT~EqI~~~V~~~ 135 (797)
+...+..|++.+-.+..+.|+.++|...+ ..|..+|++++...+..+
T Consensus 82 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 129 (146)
T 2qac_A 82 NVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAF 129 (146)
T ss_dssp CHHHHHHHHHTTCTTCSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 56788899987766666779999998876 357789999999999887
No 129
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=23.23 E-value=74 Score=26.84 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=38.3
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC----CCeeeCHHHHHHHHHHH
Q 003764 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACG----VGVEVSSEDIELTVNEV 135 (797)
Q Consensus 88 ks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cG----VGv~vT~EqI~~~V~~~ 135 (797)
.+..++..|++.+-.+..+.|+.++|...+. .|..+|++++...+..+
T Consensus 38 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (109)
T 5pal_A 38 KTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAG 89 (109)
T ss_dssp CCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 4678899999988777667899999987653 27889999998887765
No 130
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=23.19 E-value=55 Score=24.70 Aligned_cols=44 Identities=23% Similarity=0.315 Sum_probs=27.4
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHH
Q 003764 92 QLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (797)
Q Consensus 92 Ql~aA~kyl~~~~~~~id~~~Fe~~cG-VGv~vT~EqI~~~V~~~ 135 (797)
++..+++.+-.+..+.++.++|...+. .|..+|++++...+..+
T Consensus 2 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 46 (67)
T 1tiz_A 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEI 46 (67)
T ss_dssp THHHHHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 355666666555556677777776552 45667777777666544
No 131
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=22.87 E-value=3.2e+02 Score=23.52 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=36.6
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHH
Q 003764 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNE 134 (797)
Q Consensus 88 ks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cG-VGv~vT~EqI~~~V~~ 134 (797)
.+...+..|++.+-.+..+.|+.++|...+. .|..+|++++...+..
T Consensus 82 ~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 129 (149)
T 2mys_C 82 GTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKG 129 (149)
T ss_pred chHHHHHHHHHHhCCCCCceEcHHHHHHHHHHhCCCCCHHHHHHHHhh
Confidence 3457788888877666667899999988763 4678999999888776
No 132
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=22.58 E-value=76 Score=28.21 Aligned_cols=47 Identities=17% Similarity=0.407 Sum_probs=36.8
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHc-CCCeeeCHHHHHHHHHHH
Q 003764 89 TPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNEV 135 (797)
Q Consensus 89 s~~Ql~aA~kyl~~~~~~~id~~~Fe~~c-GVGv~vT~EqI~~~V~~~ 135 (797)
+..++..|++.+-.+..+.|+.++|.+.+ .+|..+|++++.+.+..+
T Consensus 81 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 128 (148)
T 1exr_A 81 SEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREA 128 (148)
T ss_dssp HHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 34567888988876666789999998765 356789999998888765
No 133
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=22.33 E-value=3.9e+02 Score=26.30 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=20.7
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHc
Q 003764 88 KTPAQLEAAFSFFASTGSENFEVDEFEEAC 117 (797)
Q Consensus 88 ks~~Ql~aA~kyl~~~~~~~id~~~Fe~~c 117 (797)
.+..++..+++.+..+..+.|+.++|...+
T Consensus 162 ~~~~~l~~~F~~~D~d~dG~I~~~Ef~~~l 191 (256)
T 2jul_A 162 TVHEKLKWAFNLYDINKDGCITKEEMLAIM 191 (256)
T ss_dssp CHHHHHHHHHHHTCCSSSSCBCHHHHHHHH
T ss_pred ChHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 355677777776655555678888887766
No 134
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=22.03 E-value=96 Score=27.53 Aligned_cols=46 Identities=13% Similarity=0.389 Sum_probs=36.3
Q ss_pred HHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHH
Q 003764 90 PAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (797)
Q Consensus 90 ~~Ql~aA~kyl~~~~~~~id~~~Fe~~cG-VGv~vT~EqI~~~V~~~ 135 (797)
...+..|++.+-.+..+.|+.++|...+. +|..+|++++.+.+..+
T Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 124 (143)
T 2obh_A 78 KEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEA 124 (143)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 35688888888766667899999988763 56779999999887654
No 135
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=21.88 E-value=81 Score=25.73 Aligned_cols=45 Identities=24% Similarity=0.524 Sum_probs=32.3
Q ss_pred HhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCeeeCHHHHHHHHHHH
Q 003764 91 AQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (797)
Q Consensus 91 ~Ql~aA~kyl~~~~~~~id~~~Fe~~cG-VGv~vT~EqI~~~V~~~ 135 (797)
.++..+++.+-.++.+.|+..+|...+. +|+.+|++++...+..+
T Consensus 20 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~ 65 (90)
T 1avs_A 20 AEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEV 65 (90)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 3466677766655557799999887753 56788999988877654
No 136
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=21.01 E-value=2e+02 Score=24.99 Aligned_cols=61 Identities=18% Similarity=0.096 Sum_probs=42.2
Q ss_pred HHHHHHhcCCCCCHHhHHHHHHHHHhcC-CCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhh
Q 003764 77 TLLLYIVSSKIKTPAQLEAAFSFFASTG-SENFEVDEFEEACGVGVEVSSEDIELTVNEVFEEN 139 (797)
Q Consensus 77 ~l~~~I~~g~iks~~Ql~aA~kyl~~~~-~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~i~~~ 139 (797)
.+++.|.+..-.|....+.+|..+..+. +...+.==|--.. |...|||+|-..|.+|-.+|
T Consensus 17 ~lv~~I~~~~~~~e~e~d~ll~~f~~~teHP~gSDLIfyP~~--~~e~spE~Iv~~ik~wRa~~ 78 (86)
T 1fr2_A 17 QLVTTICNADTSSEEELVKLVTHFAEMTEHPSGSDLIYYPKE--GDDDSPSGIVNTVKQWRAAN 78 (86)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHHHHHHCCTTTTHHHHSCCT--TCCCSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHhcCCCCcCceeecCCC--CCCCCHHHHHHHHHHHHHHc
Confidence 3577888887667888899998765442 2222332332222 68999999999999998775
No 137
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=20.39 E-value=99 Score=29.26 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=38.6
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHH
Q 003764 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEV 135 (797)
Q Consensus 88 ks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGVGv~vT~EqI~~~V~~~ 135 (797)
.+...+..|++.+-.+..+.|+.++|...+-+|..+|.+++...+..+
T Consensus 123 ~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~g~~~~~~~~~~l~~~~ 170 (196)
T 3dtp_E 123 DEEDVIVNAFNLFDEGDGKCKEETLKRSLTTWGEKFSQDEVDQALSEA 170 (196)
T ss_dssp CCHHHHHHHHHTTCSSSSCCBHHHHHHHHHHSSSCCCHHHHHHHHHSS
T ss_pred CcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 456788888888766666789999999998778889999987776543
No 138
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C
Probab=20.12 E-value=87 Score=28.54 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=37.7
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCC---------CeeeCHHHHHHHHHHHHHh
Q 003764 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACGV---------GVEVSSEDIELTVNEVFEE 138 (797)
Q Consensus 88 ks~~Ql~aA~kyl~~~~~~~id~~~Fe~~cGV---------Gv~vT~EqI~~~V~~~i~~ 138 (797)
.+..++..+++.+-.+..+.|+.++|...+.. |..+|++++.+.+..++..
T Consensus 65 ~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~g~~~s~~e~~~~~~~~f~~ 124 (143)
T 3a4u_B 65 SPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRD 124 (143)
T ss_dssp CHHHHHHHHHHHTCTTCSSCEEHHHHHHTCC-------------CCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHH
Confidence 44567888888776666678999999998753 5679999999888777654
Done!