BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003768
(796 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359484351|ref|XP_002280803.2| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Vitis vinifera]
Length = 816
Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/743 (63%), Positives = 552/743 (74%), Gaps = 50/743 (6%)
Query: 80 RTRKGTASGASSLGTRDKRVDS---------AGEEKDGKRLTKDNNSRKNFAFLKSREMS 130
RT K T SG SS G++ +RV A EEK+ KR T++ S+K ++ S
Sbjct: 4 RTGKETGSGFSSYGSKGERVGRKSVKTHVGWAVEEKNEKRFTRERYSKKRLDSRRNGGTS 63
Query: 131 SGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE 190
S SL+S+ K + KS K N+K E+++ KVR EKGSKK+K D E
Sbjct: 64 SKFPSLKSESKNLVNKSLKA------NEKEEEKSKKGDADKVREEM-EKGSKKNKVDSQE 116
Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
LRV L+MCSK GDVMGA+ LYD A REGI+LGQYHY VLLYLCSSAA+GV++PAKSG
Sbjct: 117 GL-LRVGLEMCSKNGDVMGALELYDSALREGIELGQYHYTVLLYLCSSAALGVIRPAKSG 175
Query: 251 SGMRTLDTFEVSTM-------NSTELGDSRD-----------MDNNGQLDYGS-----SP 287
+G R+LD S+ + E GD+ + NN Y + SP
Sbjct: 176 TGSRSLDMLSPSSEVRGGVSEDLAEFGDTSKKNFGGPESKIPVSNNAMSVYSTKIHQNSP 235
Query: 288 --MIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345
+++ S DDLD + E + L Q SN + NSQLL+G+ +L +G DD + KK
Sbjct: 236 KKVLNSNRSAFEVAKDDLDGSITEMDKLSQVSNCFNQSNSQLLEGQMHLRKGVDDSTNKK 295
Query: 346 DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM 405
+ DN EIR+SED KKYA +RGFEIYEKMCL++VPMNEA+LT+V RMAMSMG+GDM
Sbjct: 296 E---DN----EIRVSEDFKKYALRRGFEIYEKMCLEKVPMNEATLTSVARMAMSMGNGDM 348
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
AFDMVK+MK LGINPRLRSYGPALS FCNNGD++KA VEEHMLEHGVYPEEPELEALLR
Sbjct: 349 AFDMVKQMKPLGINPRLRSYGPALSAFCNNGDIEKAFGVEEHMLEHGVYPEEPELEALLR 408
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTME 525
V +EAGK D+VYY+LHKLRTSVR+VS STA++I KWF S AA GK W++ LI + +
Sbjct: 409 VGIEAGKSDKVYYVLHKLRTSVRQVSHSTANLIEKWFKSNAAAAAGKGNWDQRLISEAIV 468
Query: 526 NKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIK 585
N GGGWHG GWLGKGKW VSHT VG D LC CCGEKLA IDLDP ETEKFAESVASIAIK
Sbjct: 469 NGGGGWHGQGWLGKGKWNVSHTNVGADGLCLCCGEKLATIDLDPTETEKFAESVASIAIK 528
Query: 586 RERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPL 645
RE+NSSFQKFQKWLDYYGP+EAVVDAANVGL+SQR F P++VNA+VNGIRQ PSKKWPL
Sbjct: 529 REKNSSFQKFQKWLDYYGPYEAVVDAANVGLFSQRRFIPSKVNAIVNGIRQMLPSKKWPL 588
Query: 646 IVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDE 705
I+LHN+RITG KMD+P NRALIEKWKNADALY TPTGSNDDWYWLYAAIKFKCL+VTNDE
Sbjct: 589 IILHNKRITGKKMDEPANRALIEKWKNADALYTTPTGSNDDWYWLYAAIKFKCLIVTNDE 648
Query: 706 MRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQ 765
MRDH FQLLGNDFFP+WKERHQV FSFSD+GP F+MPPPCSV+IQESE G+WHIP+AS+
Sbjct: 649 MRDHIFQLLGNDFFPKWKERHQVHFSFSDSGPVFHMPPPCSVIIQESENGHWHIPVASEH 708
Query: 766 DYDDEERRWLCVTRANSHMNRQN 788
D + ER WLCVTRANS M +Q+
Sbjct: 709 D-SEGERTWLCVTRANSQMAKQS 730
>gi|297738805|emb|CBI28050.3| unnamed protein product [Vitis vinifera]
Length = 751
Score = 874 bits (2258), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/718 (64%), Positives = 536/718 (74%), Gaps = 65/718 (9%)
Query: 80 RTRKGTASGASSLGTRDKRVDS---------AGEEKDGKRLTKDNNSRKNFAFLKSREMS 130
RT K T SG SS G++ +RV A EEK+ KR T++ S+K ++ S
Sbjct: 4 RTGKETGSGFSSYGSKGERVGRKSVKTHVGWAVEEKNEKRFTRERYSKKRLDSRRNGGTS 63
Query: 131 SGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE 190
S SL+S+ K + KS K N+K E+++ KVR EKGSKK+K D E
Sbjct: 64 SKFPSLKSESKNLVNKSLKA------NEKEEEKSKKGDADKVREEM-EKGSKKNKVDSQE 116
Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
LRV L+MCSK GDVMGA+ LYD A REGI+LGQYHY VLLYLCSSAA+GV++PAKSG
Sbjct: 117 GL-LRVGLEMCSKNGDVMGALELYDSALREGIELGQYHYTVLLYLCSSAALGVIRPAKSG 175
Query: 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310
+G RT FEV+ DDLD + E
Sbjct: 176 TGSRT---FEVAK-------------------------------------DDLDGSITEM 195
Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370
+ L Q SN + NSQLL+G+ +L +G DD + KK+ DN EIR+SED KKYA +R
Sbjct: 196 DKLSQVSNCFNQSNSQLLEGQMHLRKGVDDSTNKKE---DN----EIRVSEDFKKYALRR 248
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
GFEIYEKMCL++VPMNEA+LT+V RMAMSMG+GDMAFDMVK+MK LGINPRLRSYGPALS
Sbjct: 249 GFEIYEKMCLEKVPMNEATLTSVARMAMSMGNGDMAFDMVKQMKPLGINPRLRSYGPALS 308
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV 490
FCNNGD++KA VEEHMLEHGVYPEEPELEALLRV +EAGK D+VYY+LHKLRTSVR+V
Sbjct: 309 AFCNNGDIEKAFGVEEHMLEHGVYPEEPELEALLRVGIEAGKSDKVYYVLHKLRTSVRQV 368
Query: 491 SPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVG 550
S STA++I KWF S AA GK W++ LI + + N GGGWHG GWLGKGKW VSHT VG
Sbjct: 369 SHSTANLIEKWFKSNAAAAAGKGNWDQRLISEAIVNGGGGWHGQGWLGKGKWNVSHTNVG 428
Query: 551 GDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVD 610
D LC CCGEKLA IDLDP ETEKFAESVASIAIKRE+NSSFQKFQKWLDYYGP+EAVVD
Sbjct: 429 ADGLCLCCGEKLATIDLDPTETEKFAESVASIAIKREKNSSFQKFQKWLDYYGPYEAVVD 488
Query: 611 AANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKW 670
AANVGL+SQR F P++VNA+VNGIRQ PSKKWPLI+LHN+RITG KMD+P NRALIEKW
Sbjct: 489 AANVGLFSQRRFIPSKVNAIVNGIRQMLPSKKWPLIILHNKRITGKKMDEPANRALIEKW 548
Query: 671 KNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRF 730
KNADALY TPTGSNDDWYWLYAAIKFKCL+VTNDEMRDH FQLLGNDFFP+WKERHQV F
Sbjct: 549 KNADALYTTPTGSNDDWYWLYAAIKFKCLIVTNDEMRDHIFQLLGNDFFPKWKERHQVHF 608
Query: 731 SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANSHMNRQN 788
SFSD+GP F+MPPPCSV+IQESE G+WHIP+AS+ D + ER WLCVTRANS M +Q+
Sbjct: 609 SFSDSGPVFHMPPPCSVIIQESENGHWHIPVASEHD-SEGERTWLCVTRANSQMAKQS 665
>gi|255546443|ref|XP_002514281.1| multidrug resistance pump, putative [Ricinus communis]
gi|223546737|gb|EEF48235.1| multidrug resistance pump, putative [Ricinus communis]
Length = 745
Score = 838 bits (2166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/669 (63%), Positives = 512/669 (76%), Gaps = 30/669 (4%)
Query: 142 KIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMC 201
K K K ++ ++ + +ME++ KV+ K SK++K D ++ + R+ELD C
Sbjct: 6 KGATKERKYMDNQLISGRMEKKPRKGSDNKVKEEKSGKWSKRNKGD-PQEVKFRLELDKC 64
Query: 202 SKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEV 261
KRGDVM AI+LYD AQREGIK+GQYHY VLLYLCSSAA GVV+P KSG G R ++ V
Sbjct: 65 CKRGDVMAAIQLYDLAQREGIKMGQYHYTVLLYLCSSAAAGVVQPGKSGRGGRASNSLAV 124
Query: 262 STMNST-------ELGDSRDMDN-----------NGQLDYGSSP-MIDKLESNSSYRFDD 302
S S+ EL D D+D N +D G +P DK+E SS RF+D
Sbjct: 125 SDEVSSASVVEFRELRDKNDVDATESDTKILNNVNKVIDSGRNPGSKDKMELKSSNRFND 184
Query: 303 LDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSED 362
DST NE++NL Q N Q L+ S + D + D + I +SED
Sbjct: 185 SDSTSNERKNLSQIPIVVSDSNYQQLECLSFPAKNNDGKY---------HDGNGILVSED 235
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
KKYA +RGFEIYEKMC+D++PMNEA+LTAV R+AMSMG+GDMAFDMVK+MK LG+NPRL
Sbjct: 236 IKKYALERGFEIYEKMCMDKIPMNEATLTAVARIAMSMGNGDMAFDMVKQMKLLGLNPRL 295
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
RSYGPAL+ FC++GD DKA +VE+HML+HGV+PEEPELEALLRVSVEAGKGD+VYYLLHK
Sbjct: 296 RSYGPALAAFCSSGDADKAFTVEKHMLDHGVHPEEPELEALLRVSVEAGKGDKVYYLLHK 355
Query: 483 LRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKW 542
LRTSVRKVSPSTA++I +WF SK A+R+GK KW++ ++K+ + N GGGWHG GWLGKGKW
Sbjct: 356 LRTSVRKVSPSTANIIIEWFKSKAASRVGKTKWDKRVVKEAIANGGGGWHGQGWLGKGKW 415
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYY 602
VS ++VG DA CK CG+KLA IDLDP ETE FAESVASIAIKRE++SSFQKFQKWLDYY
Sbjct: 416 TVSCSSVGVDAFCKSCGKKLATIDLDPTETESFAESVASIAIKREKDSSFQKFQKWLDYY 475
Query: 603 GPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPV 662
GPFEAVVD ANVGL Q+ F P+++NA+ NGIRQK PSKKWPLIVLHNRR+TGHKMD+PV
Sbjct: 476 GPFEAVVDGANVGLLGQKRFIPSKINAIANGIRQKLPSKKWPLIVLHNRRVTGHKMDEPV 535
Query: 663 NRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRW 722
N++L+EKWK+ADALYATPTGSNDDWYWLYAAIKFKCL+VTNDEMRDHTFQLLGNDFFP+W
Sbjct: 536 NKSLVEKWKHADALYATPTGSNDDWYWLYAAIKFKCLIVTNDEMRDHTFQLLGNDFFPKW 595
Query: 723 KERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANS 782
KERHQV F FSDAGP F+MPP SVVIQESE G+WHIPIAS DY + ER WLC+TRA
Sbjct: 596 KERHQVHFGFSDAGPVFHMPPSFSVVIQESENGHWHIPIASDTDY-EPERAWLCITRAKL 654
Query: 783 HMNRQNSYS 791
+ R++S +
Sbjct: 655 PLPRKDSIT 663
>gi|356527775|ref|XP_003532483.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Glycine max]
Length = 724
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/592 (63%), Positives = 448/592 (75%), Gaps = 68/592 (11%)
Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
+ +L+ LDMCSKRGDVMGA+ LYD A EG+KLGQ+HY VLLYLCSSAAVGVV+PAKSG
Sbjct: 106 EVKLKNALDMCSKRGDVMGALSLYDSAISEGVKLGQHHYTVLLYLCSSAAVGVVRPAKSG 165
Query: 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310
SG RTL+ S + S E+ N FD
Sbjct: 166 SGARTLN----SHVYSNEV------------------------PNEGTHFD--------- 188
Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL-SEDAKKYAFQ 369
LDG++ L +++ + DEI L SED K+YA Q
Sbjct: 189 -----------------LDGKAELNS-----------DLNSTEKDEILLVSEDVKRYALQ 220
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
RGFE+Y+ MCLD+V MNEA+LTAV RMAMSMGDGD AF+MV++MK LGI+PRLRSYGPAL
Sbjct: 221 RGFEVYQNMCLDKVQMNEAALTAVARMAMSMGDGDRAFEMVRQMKDLGISPRLRSYGPAL 280
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489
FCNNG++DKA +VE+HML+HGVYPEEPELEALLRVSV AG D+VYY+LHKLR+ VRK
Sbjct: 281 FTFCNNGEIDKAFAVEKHMLQHGVYPEEPELEALLRVSVGAGNSDKVYYVLHKLRSIVRK 340
Query: 490 VSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTV 549
VSP+T+ +I WF SK+A+R+GK+KW+E LI++ +EN GGGWHG GWLGKGKW HTT+
Sbjct: 341 VSPTTSSLIVDWFKSKQASRVGKRKWDERLIREAIENNGGGWHGQGWLGKGKWEAVHTTI 400
Query: 550 GGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVV 609
G D +CKCC +L IDLDP+ETE FA+SVAS+A+ RE+ S+FQKFQKWLDY GPFEAVV
Sbjct: 401 GKDGMCKCCQVQLTTIDLDPVETENFAKSVASLAVMREKGSNFQKFQKWLDYSGPFEAVV 460
Query: 610 DAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEK 669
DAANVGL+ Q F P ++NAV N IRQ+ PSKK+PLI+LHN+RI G KMD+P+NRALI+K
Sbjct: 461 DAANVGLFGQGRFMPHKINAVANEIRQRLPSKKFPLIILHNKRIKGDKMDEPINRALIDK 520
Query: 670 WKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVR 729
W NADALYATPTGSNDDWYWLYAAIKF+CLLVTNDEMRDH FQLLGNDFFP+WKERHQVR
Sbjct: 521 WNNADALYATPTGSNDDWYWLYAAIKFRCLLVTNDEMRDHLFQLLGNDFFPKWKERHQVR 580
Query: 730 FSFSDAG-PEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRA 780
FSFSD G P F+MPPPCSVVIQESE+G+WHIPI ++ + D+ ERRWLC+TRA
Sbjct: 581 FSFSDTGSPVFHMPPPCSVVIQESEEGHWHIPIDAELN-DESERRWLCITRA 631
>gi|449465334|ref|XP_004150383.1| PREDICTED: proteinaceous RNase P 1,
chloroplastic/mitochondrial-like [Cucumis sativus]
gi|449506617|ref|XP_004162799.1| PREDICTED: proteinaceous RNase P 1,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 633
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/661 (61%), Positives = 485/661 (73%), Gaps = 39/661 (5%)
Query: 129 MSSGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDR 188
M G S L++ +K S+ D K++++ K + +EKG K K +
Sbjct: 1 MGDGISFLKTSTDSASLKVSR------DGGKIKEKR------KGNQVVEEKG-KLLKGNN 47
Query: 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAK 248
F R LDMCSK GD +GAI+LY+ AQ+EGI L QYHY V+LYLCSSAA+GV++PAK
Sbjct: 48 ETPF--RANLDMCSKTGDFIGAIKLYEWAQKEGINLEQYHYAVILYLCSSAALGVIQPAK 105
Query: 249 SGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308
SG G +T + +S + S E N LD S + +Y +L ST N
Sbjct: 106 SGYGNQTSISLTLSKVGSYE--------NPIILDEQHSTKTSYVSKGGNYGRTEL-STEN 156
Query: 309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAF 368
++ N S+G ++D + N+ + K W +D + I + ED KKYA
Sbjct: 157 DRSN----SDG-------MMDNKENIFH-TNGSMVPKAWILDEKSHSNILVDEDFKKYAL 204
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ GFEIYEKMC + +PMNEA+LT+V RMAMSMGDGD AFDMVK+MK LG+NPRLRSYGPA
Sbjct: 205 ETGFEIYEKMCAENIPMNEATLTSVARMAMSMGDGDKAFDMVKQMKPLGLNPRLRSYGPA 264
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
LS FC NG ++KA SVE+HMLEHGVYPEEPEL ALLRVS+ A ++VYYLLHKLRTSVR
Sbjct: 265 LSTFCKNGKLEKAFSVEKHMLEHGVYPEEPELAALLRVSINASNAEKVYYLLHKLRTSVR 324
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
+V PSTAD+I WF SK+AAR+GK K + +IK + N GGGWHGLGWLG+GKW VS T
Sbjct: 325 QVLPSTADLIITWFKSKDAARVGKVKLDRKIIKKAIGNGGGGWHGLGWLGRGKWSVSSTN 384
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAV 608
VG D LCK CGEKLA IDLDPIETE FAESVA+I +RE+NSSFQKFQKWL+YYGPFEAV
Sbjct: 385 VGKDGLCKSCGEKLATIDLDPIETENFAESVAAIVTQREKNSSFQKFQKWLEYYGPFEAV 444
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
+DAANVGL+SQR F P++VN + NGIRQK PSKKWPLI+LHNRRITG KM++PVN+ LIE
Sbjct: 445 IDAANVGLFSQRKFAPSKVNLIANGIRQKLPSKKWPLIILHNRRITGRKMEEPVNKTLIE 504
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQV 728
KWKNADALYATPTGSNDDWYWLYAAIKFKCL+VTNDEMRDHTFQLLGNDFFPRWKERHQV
Sbjct: 505 KWKNADALYATPTGSNDDWYWLYAAIKFKCLIVTNDEMRDHTFQLLGNDFFPRWKERHQV 564
Query: 729 RFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRAN--SHMNR 786
FSFS GP F+MPPPCSVVIQESE G+WH+P+AS+ Y +E+R+WLC+TR N S M R
Sbjct: 565 HFSFSATGPVFHMPPPCSVVIQESENGHWHVPLASEHSY-EEDRKWLCITRGNLQSQMAR 623
Query: 787 Q 787
Q
Sbjct: 624 Q 624
>gi|357520987|ref|XP_003630782.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524804|gb|AET05258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 668
Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/608 (60%), Positives = 440/608 (72%), Gaps = 61/608 (10%)
Query: 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKP 246
D Q +LRV LD CSKRGD+ G +HY VLLYLCSSAA+G ++P
Sbjct: 75 DTPPQAKLRVSLDQCSKRGDLKG-----------------HHYTVLLYLCSSAAIGGLRP 117
Query: 247 AKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306
AKSGSG RTL+ +VS+ N NG +D R DD D
Sbjct: 118 AKSGSGTRTLNA-QVSSNNL-----------NGSVD----------------RNDDDDER 149
Query: 307 FNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366
F + +++LLD ++ D KD N I +SE K+Y
Sbjct: 150 FCSDSD-----------DNKLLDNSVSVSHSDDSDMNDKDRDKRNG----IMVSEVVKEY 194
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
A QRGFE+YE M + +V MNEA+LT+V RMAM++ DGD AF+MVK+MK LGINPRLRSYG
Sbjct: 195 ALQRGFEVYENMRMSKVEMNEAALTSVARMAMALSDGDKAFEMVKQMKILGINPRLRSYG 254
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
PALS +CNNG++DKA VE+HMLEHGVYPEEPELEALLRVS+ GK DRVYY+LHKLR+S
Sbjct: 255 PALSTYCNNGEIDKAFDVEKHMLEHGVYPEEPELEALLRVSIRGGKSDRVYYVLHKLRSS 314
Query: 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
VRKVS +TAD+I WF SK A ++GK+KW+ LI M+N GGGWHG GWLGKGKW V
Sbjct: 315 VRKVSTTTADLIVDWFKSKIALKVGKRKWDNGLIMKAMQNNGGGWHGTGWLGKGKWQVLQ 374
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
T+V D +CKCCG +LA IDLDP+ETE FA+SVASIAI E+NS+FQ FQKWLDYYGPFE
Sbjct: 375 TSVRKDGMCKCCGVQLATIDLDPVETENFAKSVASIAISNEKNSNFQTFQKWLDYYGPFE 434
Query: 607 AVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
AV+DAANVGLYSQ F P+++NAVVN +RQK PSKK+PLIVLH+RRI G K D P+N+AL
Sbjct: 435 AVIDAANVGLYSQGKFMPSKINAVVNELRQKLPSKKFPLIVLHHRRIKGDKRDVPINKAL 494
Query: 667 IEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERH 726
+++W NA+ LYATPTGSNDDWYWLYAAIKFKCLLV+NDEMRDH FQLLGNDFFP+WKERH
Sbjct: 495 VDRWNNANVLYATPTGSNDDWYWLYAAIKFKCLLVSNDEMRDHLFQLLGNDFFPKWKERH 554
Query: 727 QVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANSHMNR 786
QVRF FSDAG EFYMPPPCSVVIQESE+G+WHIPI ++ + D+ ERRWLC+TRA M
Sbjct: 555 QVRFGFSDAGLEFYMPPPCSVVIQESEEGHWHIPIEAELN-DEAERRWLCITRAKLDMVS 613
Query: 787 QNSYSSPK 794
+S ++ K
Sbjct: 614 GDSSTTSK 621
>gi|357520951|ref|XP_003630764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524786|gb|AET05240.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/608 (60%), Positives = 440/608 (72%), Gaps = 61/608 (10%)
Query: 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKP 246
D Q +LRV LD CSKRGD+ G +HY VLLYLCSSAA+G ++P
Sbjct: 109 DTPPQAKLRVSLDQCSKRGDLKG-----------------HHYTVLLYLCSSAAIGGLRP 151
Query: 247 AKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306
AKSGSG RTL+ +VS+ N NG +D R DD D
Sbjct: 152 AKSGSGTRTLNA-QVSSNNL-----------NGSVD----------------RNDDDDER 183
Query: 307 FNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366
F + +++LLD ++ D KD N I +SE K+Y
Sbjct: 184 FCSDSD-----------DNKLLDNSVSVSHSDDSDMNDKDRDKRNG----IMVSEVVKEY 228
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
A QRGFE+YE M + +V MNEA+LT+V RMAM++ DGD AF+MVK+MK LGINPRLRSYG
Sbjct: 229 ALQRGFEVYENMRMSKVEMNEAALTSVARMAMALSDGDKAFEMVKQMKILGINPRLRSYG 288
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
PALS +CNNG++DKA VE+HMLEHGVYPEEPELEALLRVS+ GK DRVYY+LHKLR+S
Sbjct: 289 PALSTYCNNGEIDKAFDVEKHMLEHGVYPEEPELEALLRVSIRGGKSDRVYYVLHKLRSS 348
Query: 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
VRKVS +TAD+I WF SK A ++GK+KW+ LI M+N GGGWHG GWLGKGKW V
Sbjct: 349 VRKVSTTTADLIVDWFKSKIALKVGKRKWDNGLIMKAMQNNGGGWHGTGWLGKGKWQVLQ 408
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
T+V D +CKCCG +LA IDLDP+ETE FA+SVASIAI E+NS+FQ FQKWLDYYGPFE
Sbjct: 409 TSVRKDGMCKCCGVQLATIDLDPVETENFAKSVASIAISNEKNSNFQTFQKWLDYYGPFE 468
Query: 607 AVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
AV+DAANVGLYSQ F P+++NAVVN +RQK PSKK+PLIVLH+RRI G K D P+N+AL
Sbjct: 469 AVIDAANVGLYSQGKFMPSKINAVVNELRQKLPSKKFPLIVLHHRRIKGDKRDVPINKAL 528
Query: 667 IEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERH 726
+++W NA+ LYATPTGSNDDWYWLYAAIKFKCLLV+NDEMRDH FQLLGNDFFP+WKERH
Sbjct: 529 VDRWNNANVLYATPTGSNDDWYWLYAAIKFKCLLVSNDEMRDHLFQLLGNDFFPKWKERH 588
Query: 727 QVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANSHMNR 786
QVRF FSDAG EFYMPPPCSVVIQESE+G+WHIPI ++ + D+ ERRWLC+TRA M
Sbjct: 589 QVRFGFSDAGLEFYMPPPCSVVIQESEEGHWHIPIEAELN-DEAERRWLCITRAKLDMVS 647
Query: 787 QNSYSSPK 794
+S ++ K
Sbjct: 648 GDSSTTSK 655
>gi|224119796|ref|XP_002331163.1| predicted protein [Populus trichocarpa]
gi|222873246|gb|EEF10377.1| predicted protein [Populus trichocarpa]
Length = 461
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/403 (77%), Positives = 360/403 (89%), Gaps = 3/403 (0%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
SED KKYA QRG EI+EKMC ++VP+NEA+LTAV RMAMS+G+GD+AF+MVK+M +LGI
Sbjct: 62 FSEDVKKYALQRGCEIFEKMCKEKVPINEATLTAVARMAMSIGNGDLAFEMVKQMDALGI 121
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478
NP+LRSYGPALSVFC++GD+DKA VE+HMLEHGVYPEEPEL+ALLRVSVE GKGD+VYY
Sbjct: 122 NPKLRSYGPALSVFCSSGDIDKAFYVEKHMLEHGVYPEEPELKALLRVSVEGGKGDKVYY 181
Query: 479 LLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLG 538
LLHKLR VR+VSPSTA +I +WFNSK A+R+GK KW+ +K+ +EN GGGWHG GWLG
Sbjct: 182 LLHKLRRIVRRVSPSTAGIIVRWFNSKAASRVGKTKWD---VKEAIENGGGGWHGQGWLG 238
Query: 539 KGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKW 598
KGKW VS T+VG D +CK CG+KL IDLD +ETEKFAESVASIAIKR+R+SSFQ+FQKW
Sbjct: 239 KGKWTVSCTSVGLDGICKYCGQKLTTIDLDAVETEKFAESVASIAIKRDRDSSFQRFQKW 298
Query: 599 LDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKM 658
LDYYGPFEAV+D AN G+Y+Q F P+++NAVVNGIRQK PSKKWPLIVLHN+RITG KM
Sbjct: 299 LDYYGPFEAVIDGANAGIYNQGRFMPSKINAVVNGIRQKLPSKKWPLIVLHNKRITGRKM 358
Query: 659 DQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDF 718
D PVN+A IEKWKNADALYATPTGSNDDWYWLYAAIKFKCL+VTNDEMRDHTF LLGNDF
Sbjct: 359 DGPVNKAFIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLIVTNDEMRDHTFHLLGNDF 418
Query: 719 FPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPI 761
FPRWKERHQV F F+DAGP+F MPPPCSVVIQESEKG+WHIPI
Sbjct: 419 FPRWKERHQVHFRFTDAGPDFDMPPPCSVVIQESEKGHWHIPI 461
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/62 (77%), Positives = 53/62 (85%), Gaps = 1/62 (1%)
Query: 179 KGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238
KGSK+ K D SE +LRV LDMCSKRGDV+ AI+LYD AQREGIK+GQYHY VLLYLCSS
Sbjct: 1 KGSKQDKVDSSE-LKLRVRLDMCSKRGDVIAAIQLYDLAQREGIKMGQYHYAVLLYLCSS 59
Query: 239 AA 240
AA
Sbjct: 60 AA 61
>gi|413936385|gb|AFW70936.1| hypothetical protein ZEAMMB73_755879 [Zea mays]
Length = 684
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/622 (51%), Positives = 419/622 (67%), Gaps = 56/622 (9%)
Query: 168 GQYKVRGITDEKGSKKSKKDRSEQF--QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225
G + G KK KK ++ +LRVELDMCSKRGDVMGAI LYD A EGIKLG
Sbjct: 111 GNSRDEGTGRRNACKKMKKPPDGEYAGKLRVELDMCSKRGDVMGAITLYDSAVEEGIKLG 170
Query: 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNS--TELGDSRDMDNNGQLDY 283
Q+HYNVLLYLCSSA++G V+PAKSG+ M S +G ++ +D +
Sbjct: 171 QHHYNVLLYLCSSASLGFVQPAKSGN------------MGSGIASIGPAQKLDPSPSRSL 218
Query: 284 GSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSR 343
G S + S S + ++ +N G +K +
Sbjct: 219 GGSEGDNAYASESHVQ--------DQGKNKADLIPGGLKAQTV----------------- 253
Query: 344 KKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE--VPMNEASLTAVGRMAMSMG 401
I + ++ YA RGFEI++KMC ++ V M+EA+LTA RMA+SMG
Sbjct: 254 ------------SIPVEDELGDYARARGFEIFDKMCSEKERVQMSEAALTAKARMALSMG 301
Query: 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461
D DMAF++VK+MK LG+ P+LRSYGPAL+ FCN+G+V+KA VE HMLE G+ PEE ELE
Sbjct: 302 DSDMAFEIVKQMKGLGLKPKLRSYGPALTAFCNSGNVEKAFEVEAHMLESGITPEEAELE 361
Query: 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIK 521
LLR SV +GD+VYYLLHK RT+VR+VS STA++ WF S A+++GK+KW+ I
Sbjct: 362 TLLRASVVGRRGDKVYYLLHKFRTAVRQVSHSTAELFEAWFRSPTASKVGKRKWDAGAIA 421
Query: 522 DTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVAS 581
+EN GGGWHG GWLG+GKW V+H+ + + +C CGEKLAIIDLDP ETE FA VA
Sbjct: 422 KAIENNGGGWHGFGWLGRGKWTVAHSNINENGVCLACGEKLAIIDLDPKETEDFATFVAK 481
Query: 582 IAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSK 641
+AIKRER S+F+ FQKWL+ +GPFEAVVDAANVGL+S ++ ++VN+V + IR +F SK
Sbjct: 482 LAIKRERKSNFENFQKWLEKHGPFEAVVDAANVGLFSHKHLSLSKVNSVADAIRLRFTSK 541
Query: 642 KWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLV 701
KWPLIVLHN+ + G +M + + L++KWK +++YATPTGSNDDWYWLYAAI+ KCL++
Sbjct: 542 KWPLIVLHNKHLIGERMKKLNDHKLVQKWKQENSIYATPTGSNDDWYWLYAAIRCKCLII 601
Query: 702 TNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPI 761
TNDEMRDHTFQ+L +FFP+WKERHQV F+ D F MPPP SVVIQES+KG+WHIP+
Sbjct: 602 TNDEMRDHTFQILERNFFPKWKERHQVHFTLEDRCVTFQMPPPYSVVIQESDKGHWHIPV 661
Query: 762 ASKQDYDDEERRWLCVTRANSH 783
S++ +++R WLCVTR NS
Sbjct: 662 -SEEGLLEKDRTWLCVTRQNSQ 682
>gi|115445507|ref|NP_001046533.1| Os02g0273800 [Oryza sativa Japonica Group]
gi|47848046|dbj|BAD21831.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536064|dbj|BAF08447.1| Os02g0273800 [Oryza sativa Japonica Group]
gi|215697065|dbj|BAG91059.1| unnamed protein product [Oryza sativa Japonica Group]
gi|326324779|dbj|BAJ84577.1| P0413A11.14-1 [Oryza sativa Indica Group]
Length = 719
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/593 (55%), Positives = 418/593 (70%), Gaps = 52/593 (8%)
Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
+ +LRVELDMCSKRGDV+GAI LYD A +EGIK+GQ+HY+VLLYLCSSAA+G V+PAKSG
Sbjct: 177 EVKLRVELDMCSKRGDVIGAINLYDSAVKEGIKMGQHHYSVLLYLCSSAALGFVQPAKSG 236
Query: 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310
+ + + GQL S+ + LE DD+
Sbjct: 237 NAGSGIASI-------------------GQLHSSSTQSVGNLEG------DDVQ------ 265
Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370
S GH S+ +G DD + K I +S++ ++YA R
Sbjct: 266 ------SEGH----SEDQEGNKTDLFASDDGTEK---------PSRIPVSDELREYARTR 306
Query: 371 GFEIYEKMCLDE--VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
GFEI+EKM +E VPMNE++LTAV RMAMSMG+GDMAFD+VK+MK GI P+LRSYGPA
Sbjct: 307 GFEIFEKMRSEEEKVPMNESALTAVARMAMSMGNGDMAFDVVKQMKDQGIAPKLRSYGPA 366
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L+ FCN+G+V+KA VE HMLE GV PEEPELE LL+ SV A +GD+VYYLLHK RT+VR
Sbjct: 367 LTAFCNSGNVEKAFEVEAHMLESGVRPEEPELETLLKASVAAQQGDKVYYLLHKFRTTVR 426
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
+ S +TA ++ WF S A+++GK+KW+ I +EN GGGWHGLGWLG+GKW +SH+
Sbjct: 427 QASSTTAKLLEDWFQSPTASKVGKRKWDSGAITKAIENNGGGWHGLGWLGRGKWTISHSH 486
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAV 608
+ + C CGEKL IIDLDP ETE FA VA +AIKRER S+F FQKWL+ +GPF+AV
Sbjct: 487 IDRNGACLACGEKLTIIDLDPKETEDFATLVAKLAIKRERRSNFDNFQKWLEKHGPFDAV 546
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
VD ANVGL+S ++ +++N V + IRQ+F S+K PLIV+HNR +TG +M +P NR L+E
Sbjct: 547 VDGANVGLFSHKHISLSKINIVADVIRQRFQSRKLPLIVVHNRHLTGERMQKPSNRKLVE 606
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQV 728
KWK ++A+YATPTGSNDDWYWLYAAI+ KCL+VTNDEMRDHTFQLL DFFP+WKERHQV
Sbjct: 607 KWKLSNAIYATPTGSNDDWYWLYAAIRCKCLMVTNDEMRDHTFQLLERDFFPKWKERHQV 666
Query: 729 RFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRAN 781
RF+F D+ MPPPCSVVIQESE G WHIP+ S++ +++R WLCVTR N
Sbjct: 667 RFNFEDSCVTLQMPPPCSVVIQESENGQWHIPVVSEEGSLEKDRTWLCVTRRN 719
>gi|218190470|gb|EEC72897.1| hypothetical protein OsI_06719 [Oryza sativa Indica Group]
Length = 719
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/616 (54%), Positives = 425/616 (68%), Gaps = 52/616 (8%)
Query: 168 GQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY 227
GQ G + KK K + +LRVELDMCSKRGDV+GAI LYD A +EGIK+GQ+
Sbjct: 154 GQSNASGGNASRKGKKKAKGGENEVKLRVELDMCSKRGDVIGAINLYDSAVKEGIKMGQH 213
Query: 228 HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSP 287
HY+VLLYLCSSAA+G V+PAKSG+ + + GQL S+
Sbjct: 214 HYSVLLYLCSSAALGFVQPAKSGNAGSGIASI-------------------GQLHSSSTQ 254
Query: 288 MIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDW 347
+ LE DD+ S GH S+ +G DD + K
Sbjct: 255 SVGNLEG------DDVQ------------SEGH----SEDQEGNKTDLFASDDGTEK--- 289
Query: 348 SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE--VPMNEASLTAVGRMAMSMGDGDM 405
I +S++ ++YA RGFEI+EKM +E VPMNE++LTAV RMAMSMG+GDM
Sbjct: 290 ------PSRIPVSDELREYARTRGFEIFEKMRSEEEKVPMNESALTAVARMAMSMGNGDM 343
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
AFD+VK+MK GI P+LRSYGPAL+ FCN+G+V+KA VE HMLE GV PEEPELE LL+
Sbjct: 344 AFDVVKQMKDQGIAPKLRSYGPALTAFCNSGNVEKAFEVEAHMLESGVRPEEPELETLLK 403
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTME 525
SV A +GD+VYYLLHK RT+VR+ S +TA ++ WF S A+++GK+KW+ I +E
Sbjct: 404 ASVAAQQGDKVYYLLHKFRTTVRQASSTTAKLLEDWFQSPTASKVGKRKWDAGAITKAIE 463
Query: 526 NKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIK 585
N GGGWHGLGWLG+GKW +SH+ + + C CGEKL IIDLDP ETE FA VA +AIK
Sbjct: 464 NNGGGWHGLGWLGRGKWTISHSHIDRNGACLACGEKLTIIDLDPKETEDFATLVAKLAIK 523
Query: 586 RERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPL 645
RER S+F FQKWL+ +GPF+AVVD ANVGL+S ++ +++N V + IRQ+F S+K PL
Sbjct: 524 RERRSNFDNFQKWLEKHGPFDAVVDGANVGLFSHKHISLSKINIVADVIRQRFQSRKLPL 583
Query: 646 IVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDE 705
IV+HNR +TG +M +P NR L+EKWK ++A+YATPTGSNDDWYWLYAAI+ KCL+VTNDE
Sbjct: 584 IVVHNRHLTGERMQKPSNRKLVEKWKLSNAIYATPTGSNDDWYWLYAAIRCKCLMVTNDE 643
Query: 706 MRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQ 765
MRDHTFQLL DFFP+WKERHQVRF+F D+ MPPPCSVVIQESE G WHIP+ S++
Sbjct: 644 MRDHTFQLLERDFFPKWKERHQVRFNFEDSCVTLQMPPPCSVVIQESENGQWHIPVVSEE 703
Query: 766 DYDDEERRWLCVTRAN 781
+++R WLCVTR N
Sbjct: 704 GSLEKDRTWLCVTRRN 719
>gi|222622584|gb|EEE56716.1| hypothetical protein OsJ_06217 [Oryza sativa Japonica Group]
Length = 711
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 322/587 (54%), Positives = 406/587 (69%), Gaps = 59/587 (10%)
Query: 204 RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVST 263
RGDV+GAI LYD A +EGIK+GQ+HY+VLLYLCSSAA+G V+PAKSG+ + +
Sbjct: 175 RGDVIGAINLYDSAVKEGIKMGQHHYSVLLYLCSSAALGFVQPAKSGNAGSGIASI---- 230
Query: 264 MNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL 323
GQL S+ + LE DD+ S GH
Sbjct: 231 ---------------GQLHSSSTQSVGNLEG------DDVQ------------SEGH--- 254
Query: 324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE- 382
S+ +G DD + K I +S++ ++YA RGFEI+EKM +E
Sbjct: 255 -SEDQEGNKTDLFASDDGTEK---------PSRIPVSDELREYARTRGFEIFEKMRSEEE 304
Query: 383 -VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441
VPMNE++LTAV RMAMSMG+GDMAFD+VK+MK GI P+LRSYGPAL+ FCN+G+V+KA
Sbjct: 305 KVPMNESALTAVARMAMSMGNGDMAFDVVKQMKDQGIAPKLRSYGPALTAFCNSGNVEKA 364
Query: 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKW 501
VE HMLE GV PEEPELE LL+ SV A +GD+VYYLLHK RT+VR+ S +TA ++ W
Sbjct: 365 FEVEAHMLESGVRPEEPELETLLKASVAAQQGDKVYYLLHKFRTTVRQASSTTAKLLEDW 424
Query: 502 FNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEK 561
F S A+++GK+KW+ I +EN GGGWHGLGWLG+GKW +SH+ + + C CGEK
Sbjct: 425 FQSPTASKVGKRKWDSGAITKAIENNGGGWHGLGWLGRGKWTISHSHIDRNGACLACGEK 484
Query: 562 LAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRN 621
L IIDLDP ETE FA VA +AIKRER S+F FQKWL+ +GPF+AVVD ANVGL+S ++
Sbjct: 485 LTIIDLDPKETEDFATLVAKLAIKRERRSNFDNFQKWLEKHGPFDAVVDGANVGLFSHKH 544
Query: 622 -------FKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNAD 674
F ++N V + IRQ+F S+K PLIV+HNR +TG +M +P NR L+EKWK ++
Sbjct: 545 ISLSLYLFLTGQINIVADVIRQRFQSRKLPLIVVHNRHLTGERMQKPSNRKLVEKWKLSN 604
Query: 675 ALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSD 734
A+YATPTGSNDDWYWLYAAI+ KCL+VTNDEMRDHTFQLL DFFP+WKERHQVRF+F D
Sbjct: 605 AIYATPTGSNDDWYWLYAAIRCKCLMVTNDEMRDHTFQLLERDFFPKWKERHQVRFNFED 664
Query: 735 AGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRAN 781
+ MPPPCSVVIQESE G WHIP+ S++ +++R WLCVTR N
Sbjct: 665 SCVTLQMPPPCSVVIQESENGQWHIPVVSEEGSLEKDRTWLCVTRRN 711
>gi|356511361|ref|XP_003524395.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g32230, mitochondrial-like [Glycine max]
Length = 540
Score = 613 bits (1580), Expect = e-172, Method: Compositional matrix adjust.
Identities = 284/435 (65%), Positives = 345/435 (79%), Gaps = 21/435 (4%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
+SED K+YA QRGF++YE M +D+V MNEA+ GDMAF+MVK+M
Sbjct: 100 VSEDVKRYALQRGFQVYENMRVDKVQMNEAA------------XGDMAFEMVKQMX---- 143
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478
LRSYGPALS FCNNG++DKA +VE+HML HGVYPEEPELEAL RVSV AG D++YY
Sbjct: 144 ---LRSYGPALSTFCNNGEIDKAFAVEKHMLXHGVYPEEPELEALSRVSVGAGNSDKIYY 200
Query: 479 LLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLG 538
+LHKLR VRKVSP+T +I F +K+A+R+GK+KW++ LI + EN GGG HG GWLG
Sbjct: 201 VLHKLRIIVRKVSPTTGSLIFDLFKNKQASRVGKRKWDKRLIMEATENNGGGRHGQGWLG 260
Query: 539 KGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKW 598
KGKW V HTT+G D LCKCCG +L IDLDP+ET+ FA VAS+A+ RE+ S+FQKFQK
Sbjct: 261 KGKWEVVHTTIGNDGLCKCCGVQLTTIDLDPVETQNFANLVASLAVMREKGSNFQKFQKS 320
Query: 599 LDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKM 658
L YYGPFEAVVDAANVGL+ Q F P ++NAV N I Q PSKK+PLI+LHN+R G KM
Sbjct: 321 LXYYGPFEAVVDAANVGLFGQGRFMPQKINAVANEICQTLPSKKFPLIILHNKRSKGDKM 380
Query: 659 DQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDF 718
D+P+NR+LI+KW NADALYATP+GSND+WYWLYAAIKF+CLLVTNDEMRDH FQLLGNDF
Sbjct: 381 DEPINRSLIDKWNNADALYATPSGSNDNWYWLYAAIKFRCLLVTNDEMRDHLFQLLGNDF 440
Query: 719 FPRWKERHQVRFSFSDAG-PEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCV 777
FP+WKERHQVRFSFSD G P F+MPPPCSVVIQES++G+WHIPI ++ +Y + ERRWLC+
Sbjct: 441 FPKWKERHQVRFSFSDTGSPVFHMPPPCSVVIQESDEGHWHIPIXAELNY-EPERRWLCI 499
Query: 778 TRANSHMNRQNSYSS 792
TRA + ++S +S
Sbjct: 500 TRAKLDVLSKDSSTS 514
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 69/87 (79%), Gaps = 2/87 (2%)
Query: 175 ITDEKGSK-KSKKDR-SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVL 232
+ +E G + K KKD+ S + +L+ LDMCSKRGDVMGA+ LYD A EG+KLGQ+HY +L
Sbjct: 7 LVEEDGERVKKKKDKDSPEVKLKNGLDMCSKRGDVMGALSLYDSAISEGVKLGQHHYTLL 66
Query: 233 LYLCSSAAVGVVKPAKSGSGMRTLDTF 259
L+LCSSAAVGVV+PAKSGSG RTL+
Sbjct: 67 LFLCSSAAVGVVRPAKSGSGARTLNAL 93
>gi|357139247|ref|XP_003571195.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Brachypodium distachyon]
Length = 729
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 278/470 (59%), Positives = 352/470 (74%), Gaps = 15/470 (3%)
Query: 328 LDGRSNLERGPDDQSRKKDWSIDNQDADE------------IRLSEDAKKYAFQRGFEIY 375
LD S G + S + + NQ+ +E I +S++ ++YA RGFEI+
Sbjct: 249 LDPASVESSGHPEDSNVPEGHVQNQEGNETILFPSVQIGSSIPVSDEIREYARTRGFEIF 308
Query: 376 EKMCLDE--VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433
EKMC ++ V M++A+LT V RMA SMG+GDMAF++VK+MK LGI P+LRSYGPAL+ FC
Sbjct: 309 EKMCSEKERVAMSKAALTGVARMATSMGNGDMAFEIVKQMKELGITPKLRSYGPALTAFC 368
Query: 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493
++G+V+KA VE HMLE GV PEEPELE LLR SV A +GDRVYYLLHK R +VR+VSPS
Sbjct: 369 DSGNVEKAFEVEAHMLESGVTPEEPELEMLLRASVVARRGDRVYYLLHKFRNTVRQVSPS 428
Query: 494 TADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDA 553
TA+ I WF S A+++GK+KW+ + +EN GGGWHGLGWLG+GKW ++ + + +
Sbjct: 429 TAEQIEAWFRSSTASKVGKRKWDACALAKEIENHGGGWHGLGWLGRGKWTITRSHIDKNG 488
Query: 554 LCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAAN 613
+C CG KLAIIDLDP ETE FA VA++A+KRER S+F FQKWLD +GPFEAV+DAAN
Sbjct: 489 VCLACGGKLAIIDLDPKETEDFATLVATLALKRERTSNFDNFQKWLDDHGPFEAVMDAAN 548
Query: 614 VGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNA 673
VGL+S R+ ++VNAV + I+++FPS+KWPLIV+HNR +TG M P N +E WK A
Sbjct: 549 VGLFSHRHLSVSKVNAVADAIQKRFPSRKWPLIVVHNRHLTGKHMKNPANHKWVENWKRA 608
Query: 674 DALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFS 733
D +Y TPTGSNDDWYWLYAAI++KCL++TNDEMRDHTFQLL DFFP+WKERHQVRFSF
Sbjct: 609 DIIYETPTGSNDDWYWLYAAIRWKCLIITNDEMRDHTFQLLEKDFFPKWKERHQVRFSFG 668
Query: 734 DAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANSH 783
D+ F MPPPCSVVIQESEKG+WHIP S++ +EER WLCV R +S
Sbjct: 669 DSCVTFQMPPPCSVVIQESEKGHWHIP-LSEESLLEEERTWLCVMRRSSQ 717
>gi|242064790|ref|XP_002453684.1| hypothetical protein SORBIDRAFT_04g010320 [Sorghum bicolor]
gi|241933515|gb|EES06660.1| hypothetical protein SORBIDRAFT_04g010320 [Sorghum bicolor]
Length = 632
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 295/664 (44%), Positives = 397/664 (59%), Gaps = 71/664 (10%)
Query: 42 SSSPP---KRTPLLVFKAHVRNTQAKLSTTETEHETSTVTLRTRKGTASGASSLGTRDKR 98
SSSPP +R P+ H R+ L T +R G A R
Sbjct: 22 SSSPPIVTRRCPVPTLSCHGRDV---LDVMPNRDSRIPGTEESRAGPAGPPRGTNGPTVR 78
Query: 99 VDSAGEE------KDGKRLTKDNNSRKNFAFLKSRE--MSSGNSSLRSKDKKIG---IKS 147
D+ +E ++G R + + L+ R +S S R + +G ++
Sbjct: 79 EDATAQEARTPLWREGSRGAPRTWRKGDRVVLQERVEWVSQERSWRRGLTRSLGSEGPRA 138
Query: 148 SKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQF--QLRVELDMCSKRG 205
K RE + + ++ + G + G SKK K+ + ++ +LRVELDMCSKRG
Sbjct: 139 GKRWTREGNGMRAKE-SGKVGNSRDEGTGRRNASKKMKRSKGGEYAGKLRVELDMCSKRG 197
Query: 206 DVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMN 265
DVMGAI LYD A EG++LGQ+HYNVLLYLCSSA++G V+PAKSG+
Sbjct: 198 DVMGAIALYDSAVEEGVRLGQHHYNVLLYLCSSASLGFVQPAKSGN-------------- 243
Query: 266 STELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNS 325
++G +G S + L S + + D++ ++LG K +
Sbjct: 244 ----------TSSGIASFGPSQKLGPLPSGNLGGSEGDDASEGHVQDLG-------KNKA 286
Query: 326 QLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE--V 383
LL G S + I + +D ++YA RGFEI+EKMC ++ V
Sbjct: 287 SLLPGGSKAQ------------------TVSIPVGDDLREYACARGFEIFEKMCSEKERV 328
Query: 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443
M+EA+LTA RMA+SMGD DMAF++VK+MK LG+ P+LRSYGPAL+ FCN G+V+KA
Sbjct: 329 QMSEAALTAKARMALSMGDSDMAFEIVKQMKDLGLKPKLRSYGPALTAFCNGGNVEKAFE 388
Query: 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFN 503
VE HMLE G+ PEE ELE LLR SV +GD+VYYL+HK RT+VR+VSPSTA++ WF
Sbjct: 389 VEAHMLESGITPEEAELETLLRASVVGRRGDKVYYLMHKFRTTVRQVSPSTAELFEVWFR 448
Query: 504 SKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLA 563
S A+++GK+KW+ I +EN GGGWHG GWLG+GKW V+ + + + +C CGEKLA
Sbjct: 449 SPTASKVGKRKWDTGAIVKAIENNGGGWHGFGWLGRGKWTVTRSNINKNGVCLACGEKLA 508
Query: 564 IIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFK 623
IIDLDP ETE FA VA +AIKRERNS+F+ FQKWL +GPFEAVVDAANVGL+ R+
Sbjct: 509 IIDLDPKETEDFATFVAKLAIKRERNSNFENFQKWLKKHGPFEAVVDAANVGLFGHRHLS 568
Query: 624 PARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGS 683
++VNAV + IR +F S+KWPLIVLHN+ +TG M +P N L+EKWK A+++YATPTGS
Sbjct: 569 LSKVNAVADAIRLRFTSRKWPLIVLHNKHLTGEHMKKPGNHKLVEKWKQANSIYATPTGS 628
Query: 684 NDDW 687
NDDW
Sbjct: 629 NDDW 632
>gi|255570201|ref|XP_002526061.1| multidrug resistance pump, putative [Ricinus communis]
gi|223534642|gb|EEF36338.1| multidrug resistance pump, putative [Ricinus communis]
Length = 589
Score = 470 bits (1210), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/420 (53%), Positives = 304/420 (72%), Gaps = 1/420 (0%)
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+E A F+RGFEI+++M +D+VP NEA+ T R+A++M D +MAFD++K+MK I
Sbjct: 164 NEKASNMQFKRGFEIFQQMVIDKVPPNEATFTNAARLAIAMEDPEMAFDLIKQMKCFDIL 223
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
P+LRSYGPAL FC G D+A +V+ HM E GV PEEPEL ALL++SV+ + D+VY +
Sbjct: 224 PKLRSYGPALFGFCKKGMADRAYAVDAHMAESGVMPEEPELSALLKLSVDIKRADKVYEM 283
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539
LH+LR +VR+V+ +T D+I WF S++A+++G++KW+ S +++ + GGGWHG GWLG
Sbjct: 284 LHRLRATVRQVTETTIDIIEAWFKSEDASKIGEEKWDVSKVREGVVRGGGGWHGQGWLGS 343
Query: 540 GKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWL 599
G+W V T + A+C C EKL ID+DP ETE FA S+ ++A +RE + F +FQ+WL
Sbjct: 344 GQWRVVRTQIDAKAVCNSCSEKLVCIDIDPSETENFATSLTNLACQREVKADFVRFQEWL 403
Query: 600 DYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
+GPF+AV+D AN+GL +Q NF ++N VV+ +RQ PSK+ PLI+LH R+TG
Sbjct: 404 QKHGPFDAVIDGANLGLINQTNFSFRQLNTVVSKLRQMSPSKRLPLIILHRSRVTGGPAQ 463
Query: 660 QPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFF 719
P N L+E WK + ALYATPTGSNDDWYWLYAA+ CLLVTNDEMRDH FQLLG FF
Sbjct: 464 NPNNMKLLEFWKKSGALYATPTGSNDDWYWLYAAVSCNCLLVTNDEMRDHLFQLLGTSFF 523
Query: 720 PRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTR 779
PRWKE+HQVR S S +G +MPPP S+VIQESE G+WH+P S+ D + R+WLC +R
Sbjct: 524 PRWKEKHQVRLSVSRSGIALHMPPPYSIVIQESENGSWHVPTISEDDLET-PRQWLCASR 582
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 39/47 (82%)
Query: 194 LRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240
LR ++D CSK G+++ A+RLYD+A+ G++L Q+HYNVLLYLCSS +
Sbjct: 108 LRSKIDNCSKHGNLVEALRLYDEARINGVQLNQHHYNVLLYLCSSGS 154
>gi|225447818|ref|XP_002267905.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Vitis vinifera]
Length = 526
Score = 470 bits (1210), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/419 (54%), Positives = 303/419 (72%), Gaps = 1/419 (0%)
Query: 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420
E+ A +RGFEI+++M +D + NEA+ T+ R+A +M D +MAF++VK+MKS GI P
Sbjct: 97 ENVVNLALKRGFEIFKQMGVDGIEPNEATFTSAARLACAMEDPEMAFNLVKQMKSCGIPP 156
Query: 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480
+LRSYGP L FC GD D+A V+ HM+E GV EEPEL ALL +SVE+ + DRVY ++
Sbjct: 157 KLRSYGPPLFGFCKKGDADRAYEVDAHMMESGVVAEEPELCALLGLSVESRRVDRVYEMV 216
Query: 481 HKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKG 540
H+LR SVR+VS STA+V+ +WFNS++AA +G++ W+ +++ + GGGWHG GWLGKG
Sbjct: 217 HRLRASVRQVSESTAEVVERWFNSEDAAGVGEENWDVGKVREGVVKGGGGWHGQGWLGKG 276
Query: 541 KWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLD 600
KW V T + +C+ CGEKL ID+DP ETE FA S+ +A +RE + F +FQ+WL
Sbjct: 277 KWKVVRTEMDEAGVCQSCGEKLVCIDIDPRETENFASSLTKLACQREVKADFVQFQEWLQ 336
Query: 601 YYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQ 660
+GPF+AVVD ANV L +Q++F +N+VVN +RQ PSK+ PL++LH R+TG
Sbjct: 337 RHGPFDAVVDGANVSLINQKSFSFFELNSVVNRLRQISPSKRLPLVILHRSRVTGGPAQN 396
Query: 661 PVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFP 720
P N+ LIE WK + ALYATP GSNDDWYWLYAA+ CLLVTNDEMRDH FQLLG FFP
Sbjct: 397 PNNKKLIESWKKSGALYATPAGSNDDWYWLYAAVNCNCLLVTNDEMRDHLFQLLGTSFFP 456
Query: 721 RWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTR 779
RWKE+HQVR + + GP +MPPP S+VIQESE+G+WH+P + D + R+WLC TR
Sbjct: 457 RWKEKHQVRLTITRRGPVLHMPPPYSIVIQESEQGSWHVPTVTGDDLET-PRQWLCATR 514
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Query: 179 KGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238
K KK++++ E LR +LDMCSKRGDV+ A+RLYD+A+ G+ L Q+HYNVLLYLCS
Sbjct: 32 KARKKARRESPEGV-LRFKLDMCSKRGDVVEALRLYDEARSRGVPLSQHHYNVLLYLCSC 90
Query: 239 AA 240
+
Sbjct: 91 SG 92
>gi|224077472|ref|XP_002305261.1| predicted protein [Populus trichocarpa]
gi|222848225|gb|EEE85772.1| predicted protein [Populus trichocarpa]
Length = 516
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 227/415 (54%), Positives = 292/415 (70%), Gaps = 1/415 (0%)
Query: 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
K A +RGFEI+++M +D+VP NEA+ T R+A M D +MAFD+VK+MK GI P+LRS
Sbjct: 99 KLACKRGFEIFQQMIIDKVPPNEATFTNAARLASVMEDPEMAFDLVKQMKGFGIMPKLRS 158
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
YGP L FC G VDKA V+ HM+E GV EEPEL +LL++S + D++Y LLH+LR
Sbjct: 159 YGPPLFGFCKKGMVDKAYEVDAHMIESGVVAEEPELSSLLKLSADVNNADKMYELLHRLR 218
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIV 544
TSVR+V ST VI WF S+ AA++GK W+ +K+ + GGGWHG GWLG G+W V
Sbjct: 219 TSVRQVMESTVGVIEDWFKSEHAAKIGKGDWDVIKVKEGVVRGGGGWHGQGWLGHGQWRV 278
Query: 545 SHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGP 604
T + +C CGE+LA ID+DP ETE FA S++ +A RE + F +FQ+WL +GP
Sbjct: 279 VRTQMDKKGVCGSCGERLACIDIDPRETENFAISLSKLAFGREVKADFIQFQEWLQQHGP 338
Query: 605 FEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNR 664
F+AVVD ANV L +Q+ F +++N VVN + PSKK+PL++LH R+ G P N+
Sbjct: 339 FDAVVDGANVSLINQQTFNFSQLNNVVNRLHDMSPSKKFPLVILHKSRVNGGPAQSPYNK 398
Query: 665 ALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKE 724
L+E+WKN+ ALYATP GSNDDWYWLYAA+ KCLLVTNDEMRDH FQLLG FFPRWKE
Sbjct: 399 KLLERWKNSGALYATPAGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGTSFFPRWKE 458
Query: 725 RHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTR 779
+HQVR S S +G +MPPP S+VIQESE G WH+P + D + R+WLC TR
Sbjct: 459 KHQVRLSVSRSGIALHMPPPYSIVIQESENGGWHVPTTTGDDL-ETPRQWLCATR 512
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 54/75 (72%), Gaps = 2/75 (2%)
Query: 164 TNDSGQYKVRG-ITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGI 222
T+ S + V G + ++ KK+++D E LR +LDMCSK GDV+ +RLYD+A+R G+
Sbjct: 15 TSQSDEKAVGGNVVSKRLKKKARRDAPEGV-LRFKLDMCSKVGDVVEGLRLYDEARRNGV 73
Query: 223 KLGQYHYNVLLYLCS 237
+L Q+HYNV+LYLCS
Sbjct: 74 ELNQHHYNVMLYLCS 88
>gi|167998708|ref|XP_001752060.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697158|gb|EDQ83495.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 552
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 229/432 (53%), Positives = 308/432 (71%), Gaps = 10/432 (2%)
Query: 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416
+ L+++ K+ QRGF +YE M L VP NEA+ TAV R+A++ DGD+AFDMVK+M
Sbjct: 80 VVLTDEQKQLCLQRGFAVYEAMKLQGVPPNEATFTAVARLAVAKDDGDLAFDMVKQMAKA 139
Query: 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476
++PRLRSY PAL +C +++KA V+EHML GV PEE ELEALL+++ +AG D+V
Sbjct: 140 KLSPRLRSYSPALHTYCKLKNIEKAFEVDEHMLAAGVQPEESELEALLKLTADAGLEDKV 199
Query: 477 YYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWN----ESLIKDTMENKGGGWH 532
Y LLH++RT+VR +SPSTA V+ +WF S A GK WN + +K E++GGGWH
Sbjct: 200 YPLLHRIRTTVRGLSPSTAGVVQQWFESSAGANAGKSNWNSLPSQETVKAAYESRGGGWH 259
Query: 533 GLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRE-RNSS 591
GLGWLG+G W V + + + +C+ CGE+L ID+DP ET FA+S++ +A +RE +++
Sbjct: 260 GLGWLGRGSWEVKPSELDANGVCQECGEQLVTIDIDPKETVMFAKSLSELACQREGKSNE 319
Query: 592 FQKFQKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIV 647
F+KFQ WLD +GPF+ +VD ANVGL++Q F ++N+VV GI++K SK+ PLI+
Sbjct: 320 FKKFQGWLDRHGPFDVIVDGANVGLFNQNFGEGGFNFHQLNSVVKGIKEKVGSKREPLIL 379
Query: 648 LHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMR 707
LH+RR G ++ KW+ A+Y TPTGSNDDWYWL+AA+K+KC+LVTNDEMR
Sbjct: 380 LHHRRTRGGPASSSFAIKILNKWQETHAIYTTPTGSNDDWYWLFAAVKYKCILVTNDEMR 439
Query: 708 DHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDY 767
DH FQLLGNDFFPRWKERHQVRFS S GP F+MPPP S++IQES G+WHIP + +D
Sbjct: 440 DHLFQLLGNDFFPRWKERHQVRFSLSREGPVFHMPPPYSMLIQESVSGSWHIPKSGGEDV 499
Query: 768 DDEERRWLCVTR 779
+WLCVTR
Sbjct: 500 -SAPVKWLCVTR 510
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 177 DEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYL 235
DE+ SKK K+D +E +LR +DMCSK D MGAI +YDK EG + QY YNVLLYL
Sbjct: 16 DERKSKK-KRDPAES-ELRRSIDMCSKHADAMGAIEIYDKVVAEGKMSFNQYSYNVLLYL 73
Query: 236 CSSAAVGVV 244
CSS A V+
Sbjct: 74 CSSGATVVL 82
>gi|224134767|ref|XP_002327484.1| predicted protein [Populus trichocarpa]
gi|222836038|gb|EEE74459.1| predicted protein [Populus trichocarpa]
Length = 486
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 223/411 (54%), Positives = 293/411 (71%), Gaps = 1/411 (0%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
++GFEI+++M +D+VP NEA+ T R+A +M D +MAFD+VK+MK GI P+LRSYGP
Sbjct: 73 KQGFEIFQQMIIDKVPPNEATFTNAARLASAMEDPEMAFDLVKQMKGFGILPKLRSYGPP 132
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L FC G DKA V+ HM+E+GV EEPEL ALL+VS + D+VY LLH+LRTSVR
Sbjct: 133 LFGFCKKGMADKAYEVDAHMIEYGVVAEEPELSALLKVSADVNNADKVYELLHRLRTSVR 192
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
+ + ST +I WF SK AA+ GK+ W+ +K+ + GGGWHG GWLG G+W V T
Sbjct: 193 QATESTVGIIEDWFKSKHAAKTGKENWDVRKVKEGVARGGGGWHGQGWLGCGQWRVVRTQ 252
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAV 608
+ + +C CGE+LA ID+DP ETE FA S++ +A+ RE + F +FQ WL +GPF+AV
Sbjct: 253 MDKEGVCGSCGERLACIDIDPRETEDFAISLSKLALGREVKADFIRFQDWLQRHGPFDAV 312
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
VD AN+ L +Q+ F +++N+VV+ + PSKK PL++LH R+TG P N+ L+E
Sbjct: 313 VDGANLSLINQQTFSFSQLNSVVHRLHDMSPSKKLPLVILHKSRVTGGPAQSPYNKKLLE 372
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQV 728
+WKN+ ALY TP GSNDDWYWLYAA+ +KCLLVTNDEMRDH FQLLG FFPRWKE+HQV
Sbjct: 373 RWKNSGALYVTPAGSNDDWYWLYAAVCYKCLLVTNDEMRDHLFQLLGTSFFPRWKEKHQV 432
Query: 729 RFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTR 779
R S S +G MPPP S+VIQESE G+WH+P + D + R+WLC TR
Sbjct: 433 RLSVSRSGIALQMPPPYSIVIQESENGSWHVPTTTNDDL-ETPRQWLCATR 482
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Query: 182 KKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237
KK++++ E L+ +LD CSKRGDV+ +RLYD+A++ G++L Q+HYNVLLYLCS
Sbjct: 7 KKARREAPEGV-LKFKLDTCSKRGDVVEGLRLYDEARKNGVELNQHHYNVLLYLCS 61
>gi|225462213|ref|XP_002269315.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Vitis vinifera]
Length = 895
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 225/419 (53%), Positives = 301/419 (71%), Gaps = 1/419 (0%)
Query: 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420
E+ A +RGFEI+++M +D + NEA+ T+ R+A +M D +MAF++VK+MKS GI P
Sbjct: 466 ENVVNLALKRGFEIFKQMGVDGIEPNEATFTSAARLACAMEDPEMAFNLVKQMKSCGIPP 525
Query: 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480
+LRSYGP L FC GD ++A V+ HM+E GV EEPEL ALL +SVE+ D+VY ++
Sbjct: 526 KLRSYGPPLFGFCKKGDANRAYEVDAHMVESGVVAEEPELCALLGLSVESRWVDQVYEMM 585
Query: 481 HKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKG 540
H+LR SVR+VS STA+V+ +WFNS++AA +G++ W+ +++ + GGGWHG GWLGKG
Sbjct: 586 HRLRASVRQVSESTAEVVERWFNSEDAAGVGEENWDVGKVREGVVKGGGGWHGQGWLGKG 645
Query: 541 KWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLD 600
KW V T + +C+ CGEKL ID+DP ETE FA S+ +A +RE + F +FQ+WL
Sbjct: 646 KWKVGRTEMDEAGVCQSCGEKLVGIDIDPRETENFASSLTKLACQREVKADFVQFQEWLQ 705
Query: 601 YYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQ 660
++GPF+AVVD ANV L +Q++F +N+VVN +RQ PSK+ PL++LH R+TG
Sbjct: 706 WHGPFDAVVDGANVSLINQKSFSFFELNSVVNCLRQISPSKQLPLVILHRSRVTGGPAQN 765
Query: 661 PVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFP 720
P N LI+ WK + ALYATP GSNDDWYWLYAA+ CLLVTNDEMRDH FQLLG FFP
Sbjct: 766 PNNEKLIQSWKKSGALYATPAGSNDDWYWLYAAVNGNCLLVTNDEMRDHLFQLLGTSFFP 825
Query: 721 RWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTR 779
RWKE+HQVR + + GP +MPPP S+VIQESE+G+WH+P D + R+WLC TR
Sbjct: 826 RWKEKHQVRLTMTRRGPVLHMPPPYSIVIQESEQGSWHVPTVIGDDLET-PRQWLCATR 883
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Query: 179 KGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238
K KK++++ E LR +LDMCSKRGDV+ A+RLYD+A+ G+ L Q++YNVLLYLCS
Sbjct: 401 KARKKARRESPEGV-LRFKLDMCSKRGDVVEALRLYDEARSLGVPLSQHNYNVLLYLCSC 459
Query: 239 AA 240
+
Sbjct: 460 SG 461
>gi|449449619|ref|XP_004142562.1| PREDICTED: proteinaceous RNase P 1,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 588
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 215/413 (52%), Positives = 279/413 (67%), Gaps = 2/413 (0%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
RGFEI+++M D+V NEA+ T++ R+A + D +MAF +VK+MK I PRLRSYG
Sbjct: 168 VLSRGFEIFQQMMTDKVSPNEATFTSLARIAAARDDPEMAFSLVKQMKDYHIAPRLRSYG 227
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
PAL FC +A V+ HML V PEE EL ALL++S + K D+VY LLH+LR +
Sbjct: 228 PALFGFCRKLMPKEAYEVDSHMLASAVEPEELELSALLKLSSDVKKADKVYELLHRLRRT 287
Query: 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
VR+VS TA VI WFNS+ A+ +GKK W+ +++ + +GGGWHG GWLG GKW +
Sbjct: 288 VRQVSEPTAKVIEDWFNSESASEVGKKHWDVDKVRECIVRRGGGWHGEGWLGSGKWKLVR 347
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
T + + +C C +KL ID+DP ETE FA S+ +A +R + + F FQ WL+ +GPF+
Sbjct: 348 TGIDDNGVCHSCAQKLVCIDIDPKETEDFASSLTKLANQRVK-ADFNNFQGWLEKHGPFD 406
Query: 607 AVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
AV+D ANVGL ++R F ++ V +R+ PSKK PLI+LH RRIT P N L
Sbjct: 407 AVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMPLIILHKRRITDGPARNPNNMKL 466
Query: 667 IEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERH 726
IE WKN ALYATP NDDWYWLYAA++FKCLL+TNDEMRDH FQLLGN FFP+WKE+H
Sbjct: 467 IETWKNCGALYATPYSVNDDWYWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKH 526
Query: 727 QVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTR 779
QVR S S G + +MPP S+VIQESE G+ H+P + D + R WLC TR
Sbjct: 527 QVRLSVSRNGLKLHMPPSYSIVIQESENGSLHVPTTTGDDLET-PREWLCATR 578
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 176 TDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235
K KK+ K+ E L+ LDMCSK G V+ A+ LYD+A+ GI+L Q+HYNVLLYL
Sbjct: 91 VSHKLRKKALKEAPESV-LKYNLDMCSKYGQVVKALELYDEARSNGIQLNQHHYNVLLYL 149
Query: 236 CSSAAVGVVKPAKSGSGMRTLDTFEV 261
CSS ++ A + S + FE+
Sbjct: 150 CSSPSLLETSGANNLSSVVLSRGFEI 175
>gi|326518132|dbj|BAK07318.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 692
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/416 (53%), Positives = 287/416 (68%), Gaps = 1/416 (0%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
A +RGFEI+ M V NEA+LT++ R+A ++ D MAF +V+RM + GI PRLRSYG
Sbjct: 143 AARRGFEIFAAMEAQGVEPNEATLTSLARLAAAVRDPAMAFSVVRRMAAAGIPPRLRSYG 202
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
PAL +C+ D + A VE HM GV PEE EL ALLRV+ + G+ D+VY +LH+ RT
Sbjct: 203 PALFAYCDARDANGAAEVEAHMDAGGVVPEETELTALLRVNADIGRADQVYRVLHRTRTL 262
Query: 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
VR+V +TA V+ WF S AA G KW+ +++ + GGGWHG GWLGKG+W V
Sbjct: 263 VRQVCQATAQVVEAWFRSDAAAEAGVDKWDARKVREGVVKGGGGWHGQGWLGKGQWDVGQ 322
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
+ + D C+ CGEKL ID+DP ETE FA+S+A +A RE F +FQ WL +GPF+
Sbjct: 323 SEMDKDGRCQRCGEKLVCIDIDPSETETFAKSLAELACNREVRDDFVRFQDWLHRHGPFD 382
Query: 607 AVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
AV+DAANVGLY + F ++VN+VVNGI++ SKK PLIVLH R+ P N+ L
Sbjct: 383 AVIDAANVGLYKSKAFSFSQVNSVVNGIQRVTKSKKLPLIVLHRSRVNCGPAKTPQNQKL 442
Query: 667 IEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERH 726
IE W+NA ALY+TP GSNDDWYWLYAA+ + LLVTNDEMRDH FQLLG FFPRWKE+H
Sbjct: 443 IESWRNAGALYSTPPGSNDDWYWLYAAVSCRSLLVTNDEMRDHLFQLLGTSFFPRWKEKH 502
Query: 727 QVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANS 782
QVR ++S GP F++PPP S+VIQESE G+WH+P + D + R+W+C TR S
Sbjct: 503 QVRLTYSGRGPTFHLPPPYSIVIQESEAGSWHVPTTTGDDIES-PRQWVCATRKTS 557
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 177 DEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKA--QREGIKLGQYHYNVLLY 234
D K +++ + S + L+ LDMCS+ D+ A++LY+ A + L +HYN LLY
Sbjct: 74 DTKAARRRRARESPEGLLKHRLDMCSRDADLATALQLYEAAVDPATAVPLALHHYNCLLY 133
Query: 235 LCSSA 239
LCS++
Sbjct: 134 LCSNS 138
>gi|297826669|ref|XP_002881217.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327056|gb|EFH57476.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 572
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 231/424 (54%), Positives = 303/424 (71%), Gaps = 2/424 (0%)
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+E + RGF+I+++M +D+V NEA+ T R+A++ D +MAFDMVK+MK+ GI
Sbjct: 149 TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 208
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
PRLRSYGPAL FC GD KA V+ HM+E V PEEPEL ALL+VS++ D+VY +
Sbjct: 209 PRLRSYGPALFGFCRKGDAGKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYEM 268
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539
L +LR VR+VS ST D I +WF S+ AA+ G KKW+ I+D +E+ GGGWHG GWLG
Sbjct: 269 LQRLRDLVRQVSKSTFDTIEEWFKSEAAAKAGVKKWDVKKIRDAVESGGGGWHGQGWLGT 328
Query: 540 GKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWL 599
GKW V T + + +CKCC EKL ID++P+ETE FA S+ +A +RE ++F +FQ+WL
Sbjct: 329 GKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWL 388
Query: 600 DYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
+ +GPF+AV+D AN+GL +QR+F ++N V +Q PSK+ PL++LH R+ G
Sbjct: 389 ERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPAT 448
Query: 660 QPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFF 719
P NRAL+EKWKNA ALYATP GSNDDWYWLYAA+ +KCLLVTNDEMRDH FQLLGN FF
Sbjct: 449 YPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVTYKCLLVTNDEMRDHLFQLLGNSFF 508
Query: 720 PRWKERHQVRFSFS-DAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVT 778
PRWKE+HQVR S S + G +MPPP S+VIQESE G WH+P++ + D R+WLC
Sbjct: 509 PRWKEKHQVRISVSREDGLTLHMPPPYSIVIQESEDGTWHVPMSVEDDLQT-SRQWLCAK 567
Query: 779 RANS 782
R+ +
Sbjct: 568 RSKT 571
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 116/249 (46%), Gaps = 64/249 (25%)
Query: 178 EKGSKKSKK---DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234
E S+K+KK +S + L+ +LDMCSK+GDV+ A+RLYD+A+R G++L QYHYNVLLY
Sbjct: 81 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLY 140
Query: 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLES 294
+CS A E +T +S G SR D Q+ ++DK+
Sbjct: 141 VCSLA--------------------EAATESSPNPGLSRGFDIFKQM------IVDKVVP 174
Query: 295 NSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDA 354
N + F+NG ++L + + E D + K + I
Sbjct: 175 NEA-----------------TFTNG-----ARLAVAKDDPEMAFDMVKQMKAFGI----- 207
Query: 355 DEIRL-SEDAKKYAFQR------GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF 407
+ RL S + F R +E+ M EV E L A+ +++M + D +
Sbjct: 208 -QPRLRSYGPALFGFCRKGDAGKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVY 266
Query: 408 DMVKRMKSL 416
+M++R++ L
Sbjct: 267 EMLQRLRDL 275
>gi|168007180|ref|XP_001756286.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692325|gb|EDQ78682.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 526
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 225/435 (51%), Positives = 310/435 (71%), Gaps = 11/435 (2%)
Query: 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRM 413
A E+ ++++ ++ +RGF IYE M L EVP NEA+ TAV R+A++ DGD+AFDMVK+M
Sbjct: 78 ATEVVVTDEERRLCLERGFVIYEAMKLQEVPPNEATFTAVARLAVAKEDGDLAFDMVKQM 137
Query: 414 KSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473
+ ++PRLRSY PAL ++C + +KA VEEHML GV EE ELEALL+++ + G
Sbjct: 138 ANAKLSPRLRSYSPALHIYCKLKNFEKAFEVEEHMLAAGVQAEESELEALLQLATDFGLE 197
Query: 474 DRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE----SLIKDTMENKGG 529
+VY LLH++RT+VR +SPS A V+ +WF S AA GK W+ +K E++GG
Sbjct: 198 YKVYSLLHRIRTTVRGLSPSCAGVVQQWFESSPAASAGKSNWDSLPSPKTVKAAYESRGG 257
Query: 530 GWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRE-R 588
GWHGLGWLG+G W V + + +C+ CG++L ID+DP ETE FA+S++ +A +RE +
Sbjct: 258 GWHGLGWLGRGNWEVKSSVLDTGGVCQECGQQLVTIDIDPNETEMFAKSLSELACQREGK 317
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWP 644
N+ F+KFQ WL+ +GPF+A+VD ANVGL++Q F ++N+VV GI++K SK+ P
Sbjct: 318 NNEFKKFQAWLNRHGPFDAIVDGANVGLFNQNFVDGGFNFHQLNSVVKGIKEKIGSKRNP 377
Query: 645 LIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTND 704
LI+LH+RR G + P ++++W+ A A++ TPTGSNDDWYWLYAA+++KC+LVTND
Sbjct: 378 LILLHHRRTRGGPANSPHAIKMLKRWQEAHAIFTTPTGSNDDWYWLYAAVQYKCVLVTND 437
Query: 705 EMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASK 764
EMRDH F LLGNDFFP+WKERHQVRFS S GP ++MPPP S++IQES G+WHIP +
Sbjct: 438 EMRDHLFHLLGNDFFPKWKERHQVRFSMSKEGPVYHMPPPYSILIQESVSGSWHIPKSGN 497
Query: 765 QDYDDEERRWLCVTR 779
E WLCVTR
Sbjct: 498 DVSQPGE--WLCVTR 510
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 177 DEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYL 235
D++ KK KKD +E +LR +DMCSK DVMGAI +YDK EG + QY YNVLLYL
Sbjct: 16 DDRNHKK-KKDSAES-ELRRSIDMCSKFADVMGAIEIYDKVVAEGKVAFNQYTYNVLLYL 73
Query: 236 CSSAAVGVV 244
CSSAA VV
Sbjct: 74 CSSAATEVV 82
>gi|222629843|gb|EEE61975.1| hypothetical protein OsJ_16752 [Oryza sativa Japonica Group]
Length = 783
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 225/411 (54%), Positives = 285/411 (69%), Gaps = 3/411 (0%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
QRGF+I+ +M D V NEA+LT + R+A + D MAF +V+RM + G P LRSYGPA
Sbjct: 361 QRGFDIFSRMEADGVQPNEATLTILARLAAARRDPAMAFSIVRRMATAGTAPHLRSYGPA 420
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L +C+ GD D A VE HM GV PEE EL ALLRV+ G+ D+VY LLH+ R +R
Sbjct: 421 LFAYCDAGDADGATEVEAHMDASGVVPEEAELAALLRVNSARGRPDQVYRLLHRARVLLR 480
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
+V+ +TA ++ WF S A+ G W+ + +K + N GGGWHG GWLGKG+W V+ T
Sbjct: 481 QVADATAQLLESWFASHAASEAGLDHWDATKVKQGLRNGGGGWHGQGWLGKGQWTVARTD 540
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAV 608
+ D C CGEKL ID+DP ET FAESVA IAI R+ N F KFQKWL+ +GPF+AV
Sbjct: 541 MDKDGTCHRCGEKLVCIDIDPSETHSFAESVAQIAINRDAN--FVKFQKWLECHGPFDAV 598
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
+DAANVGLY++ +F VN VVNGI++ SKK PLI+LH R+ G P N+ L+E
Sbjct: 599 IDAANVGLYNRNSFSFYEVNRVVNGIQRITKSKKLPLIILHKNRVNGGPAKLPQNQKLLE 658
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQV 728
W+ A ALYATP GSNDDWYWLYAA+ ++ LLVTNDEMRDH FQLLG FFPRWKE HQV
Sbjct: 659 SWQRAGALYATPPGSNDDWYWLYAAVIYRSLLVTNDEMRDHLFQLLGTSFFPRWKENHQV 718
Query: 729 RFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTR 779
R +FS G F++PPP S+VIQESE G+WH+P + D ++ R+W+C TR
Sbjct: 719 RLTFSGRGWNFHLPPPYSIVIQESEDGSWHVPTTNGDDI-EKPRQWICATR 768
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/192 (52%), Positives = 125/192 (65%), Gaps = 2/192 (1%)
Query: 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
MAF +V+RM + G P LRSYGPAL +C+ GD D A VE HM GV PEE EL ALL
Sbjct: 1 MAFSIVRRMATAGTAPHLRSYGPALFAYCDAGDADGATEVEAHMDASGVVPEEAELAALL 60
Query: 465 RVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTM 524
RV+ G+ D+VY LLH+ R +R+V+ +TA ++ WF S A+ G W+ + +K +
Sbjct: 61 RVNSARGRPDQVYRLLHRARVLLRQVADATAQLLESWFASHAASEAGLDHWDATKVKQGL 120
Query: 525 ENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI 584
N GGGWHG GWLGKG+W V+ T + D C CGEKL ID+DP ET FAESVA IAI
Sbjct: 121 RNGGGGWHGQGWLGKGQWTVARTDMDKDGTCHRCGEKLVCIDIDPSETHSFAESVAQIAI 180
Query: 585 KRERNSSFQKFQ 596
R+ N F KFQ
Sbjct: 181 NRDAN--FVKFQ 190
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 194 LRVELDMCSKRGDVMGAIRLYDKAQREG--IKLGQYHYNVLLYLC 236
L+ +LDMCS+ D+ A+ LY+ A I L HYN LLYLC
Sbjct: 302 LKAKLDMCSRDNDLPTALALYEAAISPDSLIPLSLGHYNCLLYLC 346
>gi|218195893|gb|EEC78320.1| hypothetical protein OsI_18054 [Oryza sativa Indica Group]
Length = 557
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 225/411 (54%), Positives = 286/411 (69%), Gaps = 3/411 (0%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
QRGF+I+ +M D V NEA+LT + R+A + D MAF +V+RM + G P LRSYGPA
Sbjct: 135 QRGFDIFSRMEADGVQPNEATLTILARLAAARRDPAMAFSIVRRMATAGTAPHLRSYGPA 194
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L +C+ GD D A VE HM GV PEE EL ALLRV+ G+ D+VY LLH+ R +R
Sbjct: 195 LFAYCDAGDADGATEVEAHMDASGVVPEEAELAALLRVNSARGRPDQVYRLLHRARVLLR 254
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
+V+ +TA ++ WF S A+ G W+ + +K + N GGGWHG GWLGKG+W V+ T
Sbjct: 255 QVADATAQLLESWFASHAASEAGLDHWDATKVKQGLRNGGGGWHGQGWLGKGQWTVARTD 314
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAV 608
+ D C CGEKL ID+DP ET FAESVA IAI R+ N F KFQKWL+ +GPF+AV
Sbjct: 315 MDKDGTCHRCGEKLVCIDIDPSETHSFAESVAQIAINRDAN--FVKFQKWLECHGPFDAV 372
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
+DAANVGLY++ +F VN VVNGI++ SKK PLI+LH R+ G P N+ L+E
Sbjct: 373 IDAANVGLYNRNSFSFYEVNRVVNGIQRITKSKKLPLIILHKNRVNGGPAKLPQNQKLLE 432
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQV 728
W+ A ALYATP GSNDDWYWLYAA+ ++ LLVTNDEMRDH FQLLG FFPRWKE+HQV
Sbjct: 433 SWQRAGALYATPPGSNDDWYWLYAAVIYRSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQV 492
Query: 729 RFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTR 779
R +FS G F++PPP S+VIQESE G+WH+P + D ++ R+W+C TR
Sbjct: 493 RLTFSGRGWNFHLPPPYSIVIQESEDGSWHVPTTNGDDI-EKPRQWICATR 542
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 194 LRVELDMCSKRGDVMGAIRLYDKAQREG--IKLGQYHYNVLLYLC 236
L+ +LDMCS+ D+ A+ LY+ A I L HYN LLYLC
Sbjct: 76 LKAKLDMCSRDNDLPTALALYEAAISPDSLIPLSLGHYNCLLYLC 120
>gi|359486225|ref|XP_003633416.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Vitis vinifera]
Length = 551
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 214/426 (50%), Positives = 287/426 (67%), Gaps = 9/426 (2%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
+K A GF I++ M V NEA++TAV R+A + DGD+AF++V+ M ++PRL
Sbjct: 66 SKALALDYGFRIFDHMVNSGVTPNEATITAVARLAAAKSDGDLAFEVVRTMGKYELSPRL 125
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
R+YGPAL FC N + +KA +VEEHM+ GV+PEEPEL ALL+VS E G+GD+VY LHK
Sbjct: 126 RTYGPALYWFCANLEGEKAWAVEEHMVSMGVHPEEPELAALLKVSAEMGRGDKVYAYLHK 185
Query: 483 LRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKW 542
LRT+VR VS STA++I WF + A+ +G I++ GGGWHG GW+GKGKW
Sbjct: 186 LRTAVRSVSESTAEIIEGWFCGEAASEVGGVDCCLGAIEEVALKNGGGWHGQGWIGKGKW 245
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYY 602
+V V C C E+LA +D+D ETE F ESVA++A++RE S+F++FQ WLD +
Sbjct: 246 LVCRAKVDSSGQCGSCREQLATVDIDRAETETFLESVAAMAMEREVRSNFREFQDWLDKH 305
Query: 603 GPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKM 658
+EA+VD AN+GLY Q F +++AVV + + KK PL++LHN+R K+
Sbjct: 306 ADYEAIVDGANIGLYQQNFANGEFSIPQLDAVVKELYDR-SQKKRPLVILHNKRF--RKL 362
Query: 659 DQPV-NRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGND 717
+ NR L+++W LY TP GSNDDWYWLYAA+K KCLLVTNDEMRDH F+LLG+
Sbjct: 363 SENASNRKLLQEWLTQGVLYTTPNGSNDDWYWLYAAVKLKCLLVTNDEMRDHIFELLGSS 422
Query: 718 FFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCV 777
FF +WKERHQVR++F + MPP S+ IQES KG WH+P+AS+ D+ R W C+
Sbjct: 423 FFLKWKERHQVRYTFVKGNVKLLMPPSYSLFIQESVKGTWHVPVASESS-DESLRTWHCI 481
Query: 778 TRANSH 783
TR +SH
Sbjct: 482 TRPSSH 487
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237
+ R +LD CSKR D+ GA+ L++ A + +L YH+N LLYLC+
Sbjct: 14 KFRFDLDTCSKRRDLSGAVALFESAVSQNFRLIHYHFNALLYLCT 58
>gi|226497374|ref|NP_001147555.1| antiporter/ drug transporter/ transporter [Zea mays]
gi|195612160|gb|ACG27910.1| antiporter/ drug transporter/ transporter [Zea mays]
gi|219884449|gb|ACL52599.1| unknown [Zea mays]
Length = 553
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 222/413 (53%), Positives = 284/413 (68%), Gaps = 1/413 (0%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
A QRGF+I+ +M D V NEA+LT+V R+A + D MAF +V+RM + G PRLR+YG
Sbjct: 138 AAQRGFDIFARMEADGVQPNEATLTSVARLAAATRDPAMAFSVVRRMAAAGTPPRLRTYG 197
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
PAL +C+ D D A VE HM GV PEEPEL ALLRV+ + GK D VY LLH+ R
Sbjct: 198 PALFAYCDAKDADGAKQVEAHMDASGVVPEEPELAALLRVNADTGKADEVYRLLHRTRVL 257
Query: 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
VR+V +TA V+ WF S A++ G W+ + +K+ + GGGWHG GWLGKG W V
Sbjct: 258 VRQVCDTTAQVVEAWFRSDAASQAGVDSWDPTKVKEGVVKGGGGWHGQGWLGKGAWSVGW 317
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
T +G D C+ CGE+L ID+DP ET+ FA S+ +AIK E F FQ WL +GPF+
Sbjct: 318 TEMGKDGTCQRCGERLVCIDIDPAETDNFANSLTELAIKLEAREDFLSFQSWLRRHGPFD 377
Query: 607 AVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
AV+DAANVGLY ++F ++VN+VVN I++ SKK PLIVLH R+ P N+ +
Sbjct: 378 AVIDAANVGLYKSKDFCFSQVNSVVNAIQRVTKSKKLPLIVLHRSRVNVGPAKAPYNQKI 437
Query: 667 IEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERH 726
++ W+NA ALYATP GSNDDWYWLYAA+ + LLVTNDEMRDH FQLLG FFPRWKE+H
Sbjct: 438 LDSWRNAGALYATPPGSNDDWYWLYAAVSCRSLLVTNDEMRDHLFQLLGTSFFPRWKEKH 497
Query: 727 QVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTR 779
QVR +FS GP ++PPP S+VIQESE G+WH+P + D ++ R+WLC TR
Sbjct: 498 QVRLTFSGHGPTLHLPPPYSIVIQESEDGSWHVPTTTGDDI-EKPRQWLCTTR 549
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 179 KGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKA--QREGIKLGQYHYNVLLYLC 236
K ++ + S Q LR +LDMCS+ D+ A+RLYD A I L +HYN LLYLC
Sbjct: 63 KAVRRRRARESPQGLLRHQLDMCSRNADLTTALRLYDDALSPDNPIPLSLHHYNCLLYLC 122
Query: 237 SSAAV 241
S+AA
Sbjct: 123 SNAAA 127
>gi|356562261|ref|XP_003549390.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Glycine max]
Length = 550
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/413 (53%), Positives = 290/413 (70%), Gaps = 1/413 (0%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
+RGFEI+++M D V NEA+ T R+A + D DMAF+++K+MK++ I P+LRSY P
Sbjct: 131 LKRGFEIFQQMLNDRVQPNEATFTNAARLAAAKEDPDMAFELLKQMKNVAIAPKLRSYEP 190
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
AL FC GD +KA V+ M+E G+ EEPEL ALL VSV A K D+VY +LH+LR ++
Sbjct: 191 ALFGFCKRGDAEKAYLVDADMVESGIVAEEPELSALLEVSVNANKEDKVYEVLHRLRATL 250
Query: 488 RKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHT 547
R+VS ST ++ WFNS+ AA++GK+KW+ +++ + GGGWHG GWLG G+W V +T
Sbjct: 251 RQVSESTLGIVENWFNSEYAAKIGKEKWDVKKVREGIARGGGGWHGQGWLGSGRWKVVNT 310
Query: 548 TVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEA 607
V D +C CGEKLA ID+DP ETE FA S++ +A ++E ++F FQ WL+ +GPF+A
Sbjct: 311 QVNEDGVCLSCGEKLASIDIDPKETENFAASLSKLACQKEAKANFVHFQTWLERHGPFDA 370
Query: 608 VVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALI 667
VVD ANVGL + NF +++N VV +RQ PSK+ PLI+LH R+ G P N+ LI
Sbjct: 371 VVDGANVGLANGHNFSFSQLNTVVEQLRQISPSKRLPLIILHISRVHGGPAQNPKNKRLI 430
Query: 668 EKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQ 727
E WK LYATP GSNDDWYWLYAA+ KCLL+TNDEMRDH FQLLG++FFPRWKE+HQ
Sbjct: 431 ENWKKNGVLYATPQGSNDDWYWLYAAVSCKCLLLTNDEMRDHLFQLLGSNFFPRWKEKHQ 490
Query: 728 VRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRA 780
VR S S G MPP S+VIQES G WH+P + D++ R+WLC TR+
Sbjct: 491 VRTSASTCGRSLIMPPRYSIVIQESASGCWHVPTVTTDDHEI-PRKWLCATRS 542
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 179 KGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS- 237
K +K+ + E LR +L+ CSK GDV+ A+R YD+A++ G+ L HYN LLYLCS
Sbjct: 62 KSRRKAFYESPEGVLLR-KLNECSKDGDVIQALRHYDEARKLGVLLSLDHYNKLLYLCSV 120
Query: 238 SAAVGV 243
+A GV
Sbjct: 121 ESAAGV 126
>gi|356553964|ref|XP_003545320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Glycine max]
Length = 559
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 219/413 (53%), Positives = 292/413 (70%), Gaps = 1/413 (0%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
+RGFE++++M D V NEA+ T R+A + D DMAF+++K+MK++ I P+LRSY P
Sbjct: 130 LKRGFEVFQQMLNDRVQPNEATFTNAARLAAANEDPDMAFELLKQMKNVAIAPKLRSYEP 189
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
AL FC GD +KA V+ M+E G+ EEPEL ALL VSV A K D+VY +LH+LR+++
Sbjct: 190 ALFGFCKRGDAEKAYLVDADMVESGIVAEEPELSALLEVSVNAKKEDKVYDILHRLRSTL 249
Query: 488 RKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHT 547
R+VS ST ++ WFNS+ AA++GK+KW+ +++ + GGGWHG GWLG G+W V++T
Sbjct: 250 RQVSESTLGIVEDWFNSEYAAKIGKEKWDVKKVREGIAQGGGGWHGQGWLGSGRWKVANT 309
Query: 548 TVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEA 607
V D +C CGEKL ID+DP ETE FA S++ +A ++E ++F FQ WL+ +GPF+A
Sbjct: 310 QVNEDGVCPLCGEKLVSIDIDPKETENFAASLSKLACQKEAKANFVHFQTWLEQHGPFDA 369
Query: 608 VVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALI 667
VVD ANVGL + NF +++N VV +RQ PSK+ PLI+LH R+ G P N LI
Sbjct: 370 VVDGANVGLANGHNFSFSQLNTVVEQLRQISPSKRLPLIILHISRVRGGPAQNPKNMRLI 429
Query: 668 EKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQ 727
E WK ALYATP GSNDDWYWLYAA+ KCLL+TNDEMRDH FQLLG++FFPRWKE+HQ
Sbjct: 430 ENWKKNGALYATPQGSNDDWYWLYAAVSCKCLLLTNDEMRDHLFQLLGSNFFPRWKEKHQ 489
Query: 728 VRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRA 780
VR S S G MPP S+VIQES G+WH+P + D++ R+WLC TR+
Sbjct: 490 VRTSASTCGHSIIMPPRYSIVIQESANGSWHVPTVTTDDHEI-PRKWLCATRS 541
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGI 222
++ D G + ++ K +K+ + E LR +L+ CSK G+V A+ YD+A++ G+
Sbjct: 46 KSRDEGTTTIVKLSS-KARRKAFYESPEGVLLR-KLNECSKDGNVAQALCHYDEARKLGV 103
Query: 223 KLGQYHYNVLLYLCS 237
L HYN LLYLCS
Sbjct: 104 LLNLDHYNKLLYLCS 118
>gi|30685224|ref|NP_850186.1| proteinaceous RNase P 1 [Arabidopsis thaliana]
gi|75115346|sp|Q66GI4.1|PRRP1_ARATH RecName: Full=Proteinaceous RNase P 1, chloroplastic/mitochondrial;
AltName: Full=Pentatricopeptide repeat-containing
protein At2g32230; Flags: Precursor
gi|51536606|gb|AAU05541.1| At2g32230 [Arabidopsis thaliana]
gi|330253558|gb|AEC08652.1| proteinaceous RNase P 1 [Arabidopsis thaliana]
Length = 572
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/424 (54%), Positives = 301/424 (70%), Gaps = 2/424 (0%)
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+E + RGF+I+++M +D+V NEA+ T R+A++ D +MAFDMVK+MK+ GI
Sbjct: 149 TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 208
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
PRLRSYGPAL FC GD DKA V+ HM+E V PEEPEL ALL+VS++ D+VY
Sbjct: 209 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT 268
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539
L +LR VR+VS ST D+I +WF S+ A + G KKW+ I+D + + GGGWHG GWLG
Sbjct: 269 LQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGT 328
Query: 540 GKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWL 599
GKW V T + + +CKCC EKL ID++P+ETE FA S+ +A +RE ++F +FQ+WL
Sbjct: 329 GKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWL 388
Query: 600 DYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
+ +GPF+AV+D AN+GL +QR+F ++N V +Q PSK+ PL++LH R+ G
Sbjct: 389 ERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPAT 448
Query: 660 QPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFF 719
P NRAL+EKWKNA ALYATP GSNDDWYWLYAA+ KCLLVTNDEMRDH FQLLGN FF
Sbjct: 449 YPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFF 508
Query: 720 PRWKERHQVRFSFS-DAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVT 778
PRWKE+HQVR S + + G + MPPP S+VIQESE G WH+P++ + D R+WLC
Sbjct: 509 PRWKEKHQVRISVTREDGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDL-QTSRQWLCAK 567
Query: 779 RANS 782
R+ +
Sbjct: 568 RSKT 571
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 178 EKGSKKSKK---DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234
E S+K+KK +S + L+ +LDMCSK+GDV+ A+RLYD+A+R G++L QYHYNVLLY
Sbjct: 81 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLY 140
Query: 235 LCSSAAVGVVKPAKSGSGMRTLDTFE 260
+CS A G R D F+
Sbjct: 141 VCSLAEAATESSPNPGLS-RGFDIFK 165
>gi|406855803|pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
gi|406855805|pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/424 (54%), Positives = 301/424 (70%), Gaps = 2/424 (0%)
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+E + RGF+I+++M +D+V NEA+ T R+A++ D +MAFDMVK+MK+ GI
Sbjct: 78 TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 137
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
PRLRSYGPAL FC GD DKA V+ HM+E V PEEPEL ALL+VS++ D+VY
Sbjct: 138 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT 197
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539
L +LR VR+VS ST D+I +WF S+ A + G KKW+ I+D + + GGGWHG GWLG
Sbjct: 198 LQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGT 257
Query: 540 GKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWL 599
GKW V T + + +CKCC EKL ID++P+ETE FA S+ +A +RE ++F +FQ+WL
Sbjct: 258 GKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWL 317
Query: 600 DYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
+ +GPF+AV+D AN+GL +QR+F ++N V +Q PSK+ PL++LH R+ G
Sbjct: 318 ERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPAT 377
Query: 660 QPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFF 719
P NRAL+EKWKNA ALYATP GSNDDWYWLYAA+ KCLLVTNDEMRDH FQLLGN FF
Sbjct: 378 YPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFF 437
Query: 720 PRWKERHQVRFSFS-DAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVT 778
PRWKE+HQVR S + + G + MPPP S+VIQESE G WH+P++ + D R+WLC
Sbjct: 438 PRWKEKHQVRISVTREDGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDL-QTSRQWLCAK 496
Query: 779 RANS 782
R+ +
Sbjct: 497 RSKT 500
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 178 EKGSKKSKK---DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234
E S+K+KK +S + L+ +LDMCSK+GDV+ A+RLYD+A+R G++L QYHYNVLLY
Sbjct: 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLY 69
Query: 235 LCSSAAVGVVKPAKSGSGMRTLDTFE 260
+CS A G R D F+
Sbjct: 70 VCSLAEAATESSPNPGLS-RGFDIFK 94
>gi|20259520|gb|AAM13880.1| unknown protein [Arabidopsis thaliana]
Length = 572
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/424 (54%), Positives = 301/424 (70%), Gaps = 2/424 (0%)
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+E + RGF+I+++M +D+V NEA+ T R+A++ D +MAFDMVK+MK+ GI
Sbjct: 149 TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 208
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
PRLRSYGPAL FC GD DKA V+ HM+E V PEEPEL ALL+VS++ D+VY
Sbjct: 209 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELVALLKVSMDTKNADKVYKT 268
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539
L +LR VR+VS ST D+I +WF S+ A + G KKW+ I+D + + GGGWHG GWLG
Sbjct: 269 LQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGT 328
Query: 540 GKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWL 599
GKW V T + + +CKCC EKL ID++P+ETE FA S+ +A +RE ++F +FQ+WL
Sbjct: 329 GKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWL 388
Query: 600 DYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
+ +GPF+AV+D AN+GL +QR+F ++N V +Q PSK+ PL++LH R+ G
Sbjct: 389 ERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPAT 448
Query: 660 QPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFF 719
P NRAL+EKWKNA ALYATP GSNDDWYWLYAA+ KCLLVTNDEMRDH FQLLGN FF
Sbjct: 449 YPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFF 508
Query: 720 PRWKERHQVRFSFS-DAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVT 778
PRWKE+HQVR S + + G + MPPP S+VIQESE G WH+P++ + D R+WLC
Sbjct: 509 PRWKEKHQVRISVTREDGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDL-QTSRQWLCAK 567
Query: 779 RANS 782
R+ +
Sbjct: 568 RSKT 571
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 178 EKGSKKSKK---DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234
E S+K+KK +S + L+ +LDMCSK+GDV+ A+RLYD+A+R G++L QYHYNVLLY
Sbjct: 81 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLY 140
Query: 235 LCSSAAVGVVKPAKSGSGMRTLDTFE 260
+CS A G R D F+
Sbjct: 141 VCSLAEAATESSPNPGLS-RGFDIFK 165
>gi|356543574|ref|XP_003540235.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Glycine max]
Length = 530
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 213/426 (50%), Positives = 283/426 (66%), Gaps = 9/426 (2%)
Query: 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN--PR 421
K A GF + M V NEA++TAV R+A + GD D AFD+VK M N PR
Sbjct: 72 KPTALDYGFRAFCHMSALAVLPNEATVTAVARLAAAKGDADYAFDLVKSMGKNYNNALPR 131
Query: 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481
LR+Y PAL FC D DKA VEEHM GV EE E+ ALL+VS G+ D+VY LH
Sbjct: 132 LRTYDPALFCFCEMLDADKAYEVEEHMSGVGVSLEEAEVAALLKVSARCGRADKVYEYLH 191
Query: 482 KLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGK 541
KLR+SVR VS S+A VI +WF +++ +G+ ++ +K+ + GGGWHG GW+GKG
Sbjct: 192 KLRSSVRCVSESSAVVIEEWFRGSKSSEVGEVEFEAGQVKEGVLRNGGGWHGQGWVGKGD 251
Query: 542 WIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDY 601
W+VS T+VG D C CCGE+L +D+D E EKFA SVA++A +RE ++F +FQ WL+
Sbjct: 252 WVVSRTSVGADGHCCCCGEQLVCVDIDDAEREKFAGSVAALAFEREVKANFSEFQAWLEK 311
Query: 602 YGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHK 657
+ +EA+VD AN+GLY Q F ++++ VV + + KKWPL+VLHN+R+ G
Sbjct: 312 HASYEAIVDGANIGLYQQNFADGGFSISQLDDVVKELYNR-SGKKWPLVVLHNKRLRG-L 369
Query: 658 MDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGND 717
M+ P +R L+E+W N ALY TP GSNDDWYWL+AA+K +CLLVTNDEMRDH F+L+G++
Sbjct: 370 MENPSSRRLVEEWMNNGALYTTPNGSNDDWYWLFAAVKLRCLLVTNDEMRDHIFELIGSN 429
Query: 718 FFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCV 777
FF +WKERHQV ++F + MPP S+VIQESEKG WH+P+A + R WLC+
Sbjct: 430 FFNQWKERHQVHYTFVKGNLKLQMPPSYSLVIQESEKGYWHVPLAPGTSCES-TRCWLCI 488
Query: 778 TRANSH 783
TR H
Sbjct: 489 TRPCGH 494
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS-SAAVGVVKPAKSGS 251
+ + EL+ CSK D+ GAI LYD A +L Q+H+N LLYLCS S A +KP
Sbjct: 19 KFQFELNTCSKAKDLRGAISLYDDAVSNNTRLNQHHFNALLYLCSNSVADPSLKPTALDY 78
Query: 252 GMRT---LDTFEVSTMNSTELGDSRDMDNNGQLDYG 284
G R + V +T +R G DY
Sbjct: 79 GFRAFCHMSALAVLPNEATVTAVARLAAAKGDADYA 114
>gi|449480803|ref|XP_004156000.1| PREDICTED: proteinaceous RNase P 3-like [Cucumis sativus]
Length = 538
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/420 (49%), Positives = 280/420 (66%), Gaps = 8/420 (1%)
Query: 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423
K+ A GF +Y + V NEA++TAV R+A + DGD AF++VK + + PRLR
Sbjct: 74 KESAVSFGFRVYNLLQSIGVIPNEATVTAVARLAAAKRDGDSAFELVKTIGKYKVTPRLR 133
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+Y PAL FC N +VDKA VE+HM GV EEP++ ALL++S + GK D+VY LHKL
Sbjct: 134 TYDPALICFCENLEVDKAYEVEQHMNSAGVELEEPQISALLKLSSDTGKEDKVYEYLHKL 193
Query: 484 RTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWI 543
R V+ VS STA +I WF S++A+ +G+ + LI++ + + GGGWHG GW+GKG W+
Sbjct: 194 RRVVKCVSESTAKIIEGWFCSEKASDIGESTMDIGLIREAILSNGGGWHGKGWIGKGNWV 253
Query: 544 VSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYG 603
V T V C CC ++L +D+ ETE FA+S+A++AI+RE +F FQ+WL+ +
Sbjct: 254 VKRTNVYSSGKCCCCAQQLVGVDISCAETENFAQSLAALAIEREAQPNFISFQEWLEVHN 313
Query: 604 PFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
+A+VD ANVGLY Q F ++V AVV + K KWPL++ HN+R T +D
Sbjct: 314 HCDAIVDGANVGLYQQNFADSGFNLSQVEAVVKEL-CKMSGGKWPLVLWHNKR-TRASLD 371
Query: 660 QPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFF 719
+R ++E+W + LY+TP GSNDDWYWLYAA+K KCLLVTNDEMRDH F+LLGND F
Sbjct: 372 NSSHRKVVEEWIDKGVLYSTPIGSNDDWYWLYAAVKLKCLLVTNDEMRDHIFELLGNDLF 431
Query: 720 PRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTR 779
RWKE+HQ+R++F MPPP SVVIQESE G+WH+PIA+ + ER WLCVTR
Sbjct: 432 LRWKEKHQIRYTFVKGQLRLEMPPPYSVVIQESETGSWHVPIAAND--SELERTWLCVTR 489
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 177 DEKGSKKSKK---DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL 233
D GS K++K ++S + + +++L CS+R D++ AI L + A E +K Q H+N LL
Sbjct: 2 DSTGSAKARKKSKNQSPEVKFQLDLTDCSRRKDLLSAITLCETAVSEKLKFNQQHFNTLL 61
Query: 234 YLCSSA 239
YLCS+A
Sbjct: 62 YLCSTA 67
>gi|449466671|ref|XP_004151049.1| PREDICTED: proteinaceous RNase P 3-like [Cucumis sativus]
Length = 538
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/420 (49%), Positives = 280/420 (66%), Gaps = 8/420 (1%)
Query: 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423
K+ A GF +Y + V NEA++TAV R+A + DGD AF++VK + + PRLR
Sbjct: 74 KESAVSFGFRVYNLLQSIGVIPNEATVTAVARLAAAKRDGDSAFELVKTIGKYKVTPRLR 133
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+Y PAL FC N +VDKA VE+HM GV EEP++ ALL++S + GK D+VY LHKL
Sbjct: 134 TYDPALICFCENLEVDKAYEVEQHMNSAGVELEEPQISALLKLSSDTGKEDKVYEYLHKL 193
Query: 484 RTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWI 543
R V+ VS STA +I WF S++A+ +G+ + LI++ + + GGGWHG GW+GKG W+
Sbjct: 194 RRFVKCVSESTAKIIEGWFCSEKASDIGESTMDIGLIREAILSNGGGWHGKGWIGKGNWV 253
Query: 544 VSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYG 603
V T V C CC ++L +D+ ETE FA+S+A++AI+RE +F FQ+WL+ +
Sbjct: 254 VKRTNVYSSGKCCCCAQQLVGVDISCAETENFAQSLAALAIEREAQPNFISFQEWLEVHN 313
Query: 604 PFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
+A+VD ANVGLY Q F ++V AVV + K KWPL++ HN+R T +D
Sbjct: 314 HCDAIVDGANVGLYQQNFADSGFNLSQVEAVVKEL-CKMSGGKWPLVLWHNKR-TRASLD 371
Query: 660 QPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFF 719
+R ++E+W + LY+TP GSNDDWYWLYAA+K KCLLVTNDEMRDH F+LLGND F
Sbjct: 372 NSSHRKVVEEWIDKGVLYSTPIGSNDDWYWLYAAVKLKCLLVTNDEMRDHIFELLGNDLF 431
Query: 720 PRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTR 779
RWKE+HQ+R++F MPPP SVVIQESE G+WH+PIA+ + ER WLCVTR
Sbjct: 432 LRWKEKHQIRYTFVKGQLRLEMPPPYSVVIQESETGSWHVPIAAND--SELERTWLCVTR 489
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 177 DEKGSKKSKK---DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL 233
D GS K++K ++S + + +++L CS+R D++ AI L + A E +K Q H+N LL
Sbjct: 2 DSTGSAKARKKSKNQSPEVKFQLDLTDCSRRKDLLSAITLCETAVSEKLKFNQQHFNTLL 61
Query: 234 YLCSSA 239
YLCS+A
Sbjct: 62 YLCSTA 67
>gi|357454841|ref|XP_003597701.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486749|gb|AES67952.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 558
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 221/413 (53%), Positives = 281/413 (68%), Gaps = 1/413 (0%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
QRGFEI+E+M D V NEA+ T R+A + D +MAF+++K+MK +GI P+LRSYGP
Sbjct: 141 LQRGFEIFEQMLRDNVEPNEATFTNAARLAAAKEDPEMAFELLKQMKRVGIAPKLRSYGP 200
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
AL FC GD KA V++ M+E GV EE EL ALL VSVE D+VY +LH+LR V
Sbjct: 201 ALYGFCARGDAMKAYEVDDDMIESGVMAEEDELCALLEVSVEVKNEDKVYEILHRLRAVV 260
Query: 488 RKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHT 547
R+VS ST VI WF S+ A ++GK++W++ I++ GGGWHG GWLG G+W V T
Sbjct: 261 RQVSESTLKVIEDWFESEYAMKIGKREWDDEEIREGFVRGGGGWHGQGWLGSGEWKVVKT 320
Query: 548 TVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEA 607
V D +C C EKL ID+DP ETE FA S++ +A +++ ++F FQKWL+ GPF+A
Sbjct: 321 NVDEDGMCLSCSEKLVSIDIDPKETENFAASLSKLAHEKQPKANFNHFQKWLEKNGPFDA 380
Query: 608 VVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALI 667
VVD ANVGL + F +++ VV +RQ PSK+ PLI+LH R+TG P N+ LI
Sbjct: 381 VVDGANVGLANIAEFSFKQLDYVVRQLRQLSPSKRLPLIILHVNRVTGGPAQNPNNKRLI 440
Query: 668 EKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQ 727
E WK LYATP GSNDDWYWLYAA+ KCLL+TNDEMRDH FQLLG+ FFPRWKE+HQ
Sbjct: 441 ENWKKNGVLYATPHGSNDDWYWLYAAVSCKCLLLTNDEMRDHLFQLLGSSFFPRWKEKHQ 500
Query: 728 VRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRA 780
VR S S G +PP S+VIQES G+WH+P D D R+WLCVTR+
Sbjct: 501 VRVSVSTRGASLVLPPRYSLVIQESANGSWHVPTVV-SDEPDIPRKWLCVTRS 552
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 121 FAFLKSREMSSGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKG 180
F+ L R S S + ++ ++ T+N + Q +S + ++ T K
Sbjct: 15 FSILTHRPFLSSFSLKHTFNRATLPFTTTTINNTLSQTPTSQNNTESTTHPIKLST--KA 72
Query: 181 SKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237
+K+ ++ S L+ +L+ CSK DV+ A+ LYD+A++ + L HYN LLYLC+
Sbjct: 73 RRKAAQE-SPVGILQKKLNNCSKTSDVLQALNLYDEARKAHVPLNLDHYNKLLYLCT 128
>gi|357166890|ref|XP_003580902.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Brachypodium distachyon]
Length = 567
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/413 (52%), Positives = 282/413 (68%), Gaps = 1/413 (0%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
A RGFEI+ +M V NEA+LT+V R+A + D MAF +V+RM GI PRLR+YG
Sbjct: 150 AASRGFEIFARMEAQGVEPNEATLTSVARLAAARRDPAMAFSVVRRMADAGIPPRLRTYG 209
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
PAL +C+ GD D A VE HM GV PEE EL ALLRV+ + G+ D VY +LH+ R
Sbjct: 210 PALFAYCDAGDADGASEVEAHMDAGGVLPEETELAALLRVNADKGRADEVYRVLHRTRVL 269
Query: 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
R+V +TA VI WF S A++ G KW+ +K+ + GGGWHG GWLGKG+W V
Sbjct: 270 ARQVCETTAQVIEAWFRSDAASQAGVDKWDAKKVKEGVVKGGGGWHGQGWLGKGQWDVER 329
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
+ + + C+ CGEKL ID+DP ETE FA+S+ +A KRE F +FQ WL +GPF+
Sbjct: 330 SEMDKNGKCQRCGEKLVCIDIDPSETENFAKSLTELACKREVRDDFLRFQGWLRRHGPFD 389
Query: 607 AVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
AV+DAAN+GLY+ + F ++VN+VVNGI++ SKK PLI+LH R+ P N+ L
Sbjct: 390 AVIDAANIGLYNSKAFSFSQVNSVVNGIQRVTKSKKLPLIILHRSRVHCGPAIVPHNQKL 449
Query: 667 IEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERH 726
IE W++A ALY+TP GSNDDWYWLYAA+ + LLVTNDEMRDH FQLLG FFPRWKE+H
Sbjct: 450 IEGWRSAGALYSTPPGSNDDWYWLYAAVSCRSLLVTNDEMRDHLFQLLGTSFFPRWKEKH 509
Query: 727 QVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTR 779
QVR ++S GP F++PPP S+V QESE G WH+P + D ++ R+W+C R
Sbjct: 510 QVRLTYSGRGPTFHLPPPYSIVTQESEAGRWHVPTTTGDDIEN-PRQWICAIR 561
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 194 LRVELDMCSKRGDVMGAIRLY----DKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKS 249
L+ +LDMCS+ GD+ A+ LY D A + L +HYN LLYLCS+AA P +
Sbjct: 92 LKHKLDMCSRDGDLPTALALYDAALDPASSPPVPLSIHHYNCLLYLCSNAAATASDPDAA 151
Query: 250 GSGMRTLDTFEVSTMNSTE 268
G E + E
Sbjct: 152 SRGFEIFARMEAQGVEPNE 170
>gi|255576329|ref|XP_002529057.1| multidrug resistance pump, putative [Ricinus communis]
gi|223531469|gb|EEF33301.1| multidrug resistance pump, putative [Ricinus communis]
Length = 561
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/423 (48%), Positives = 280/423 (66%), Gaps = 11/423 (2%)
Query: 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423
K+ A Q GF+I+E M + NEAS+TA+ R+A + GDGD AF+++K M PRLR
Sbjct: 79 KELALQNGFDIFEHMVATGIKRNEASITAIARLAAAKGDGDYAFNLIKNMLVDNQLPRLR 138
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+Y P L FC + KA VE+H++ G+ EE E+ ALL+VSVE +RVY L KL
Sbjct: 139 TYDPVLFCFCEKLEAFKAYEVEDHIVSMGMNLEELEIAALLKVSVETKNKERVYGYLQKL 198
Query: 484 RTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWI 543
R +VR V TA ++ WF E + K+ + L++ + GGGWHGLGW+ KGKW
Sbjct: 199 RKTVRCVKEETAKIVEDWFKDFE---VNGKELDVGLVRKAVVKNGGGWHGLGWIEKGKWG 255
Query: 544 VSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYG 603
V + D C CCGE LA +D+D +ETE+FA S+A +A++RE ++F +FQ WLD
Sbjct: 256 VKRGNMDMDGRCCCCGESLACVDIDDLETERFAGSLAGLAMEREVKANFSEFQDWLDKNA 315
Query: 604 PFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
++A+VD ANVGLY Q F ++++AVV + + S KWPLIVLHN+R+ ++
Sbjct: 316 DYDAIVDGANVGLYQQNFAEGGFSISQLDAVVKELYDR--SGKWPLIVLHNKRVRA-ILE 372
Query: 660 QPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFF 719
P R LI++W D LY TP GSNDDWYWLYAA+K KCLLVTNDEMRDH F+LLG+ FF
Sbjct: 373 NPSQRNLIQEWTEKDILYTTPHGSNDDWYWLYAAVKLKCLLVTNDEMRDHIFELLGSSFF 432
Query: 720 PRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTR 779
+WKERHQVR++F + MPPP SV+IQESEKG+WH+PIA + +D + WLC+TR
Sbjct: 433 LKWKERHQVRYTFVKGKLKLQMPPPFSVLIQESEKGSWHVPIAGDGN-EDSAQSWLCITR 491
Query: 780 ANS 782
+++
Sbjct: 492 SSA 494
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 182 KKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237
K +KK+++ + Q L+ SK D+ AI LY A +L Q+HYN LLYLCS
Sbjct: 15 KPNKKNQTPESQFNYNLNFYSKSKDLNSAISLYKTAISNKTQLNQHHYNTLLYLCS 70
>gi|302764204|ref|XP_002965523.1| hypothetical protein SELMODRAFT_84628 [Selaginella moellendorffii]
gi|300166337|gb|EFJ32943.1| hypothetical protein SELMODRAFT_84628 [Selaginella moellendorffii]
Length = 532
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/426 (48%), Positives = 289/426 (67%), Gaps = 15/426 (3%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
A RG EIYE+M L+ + NEA+ T++ R+A++ DGD+AF +VK M + GI P+LRSYG
Sbjct: 104 ALDRGLEIYERMKLEGISANEAAFTSIARLAVAKRDGDLAFSLVKEMTTSGITPKLRSYG 163
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
PAL + + VDKA V++HM GV PEE EL+ LL +S++AG+ RVY +LH+LR S
Sbjct: 164 PALYTYFKSNRVDKAFEVDDHMRSFGVQPEEMELQILLELSLKAGQEQRVYSVLHRLRRS 223
Query: 487 VRKVSPSTADVIAKWFNSKEAARLGK-KKWNESLIKDTMENKGGGWHGLGWLGKGKWIVS 545
VR+VSPSTA I +WF+S A+ G KK+++ ++ + +GGG LGW+G G+W V
Sbjct: 224 VREVSPSTATTIERWFSSDAASSSGSDKKYDDEDVRRALAAQGGGGLELGWIGSGRWSVK 283
Query: 546 HTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNS-SFQKFQKWLDYYGP 604
T + +C+ C K+A +DL+ ET +FAE++A++A ++ER++ SF++FQ+W+ +GP
Sbjct: 284 RTALDASGVCESCRHKMAAVDLNAEETNRFAENLAALACEKERDANSFKEFQEWMAEHGP 343
Query: 605 FEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQ 660
F+A+VD ANV L++Q F +++N+VV + + K PL++LH RR+TG
Sbjct: 344 FDAIVDGANVALFNQNFSAGGFSFSQLNSVVTELSNQ--HGKSPLVILHKRRVTGGPAAS 401
Query: 661 PVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFP 720
P ++ L+++W A+ALY TGSNDDWYWLYAA+ KCLLV+NDEMRDH FQ+LGND FP
Sbjct: 402 PQSQELLKQWTAANALYTAATGSNDDWYWLYAAVTCKCLLVSNDEMRDHLFQMLGNDLFP 461
Query: 721 RWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEE-------RR 773
RWKERHQV+ P F MPPP S VIQE E G+WH PI+ D DDE R
Sbjct: 462 RWKERHQVKLRALSYNPFFDMPPPYSTVIQECENGSWHFPISRGNDEDDEAEEPHKQPRS 521
Query: 774 WLCVTR 779
WLC+ R
Sbjct: 522 WLCIRR 527
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 48/62 (77%)
Query: 183 KSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242
+ KK + +LR +L+ CSK GDV GA+ +YD ++ +G+KL QYHYNVLLYLCSSAA+G
Sbjct: 41 QKKKKFTPDSELRFKLESCSKVGDVTGALDIYDSSKDQGVKLSQYHYNVLLYLCSSAALG 100
Query: 243 VV 244
V+
Sbjct: 101 VI 102
>gi|302802496|ref|XP_002983002.1| hypothetical protein SELMODRAFT_117602 [Selaginella moellendorffii]
gi|300149155|gb|EFJ15811.1| hypothetical protein SELMODRAFT_117602 [Selaginella moellendorffii]
Length = 534
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/426 (48%), Positives = 288/426 (67%), Gaps = 15/426 (3%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
A RG EIYE+M L+ + NEA+ T++ R+A++ DGD+AF +VK M + GI P+LRSYG
Sbjct: 104 ALDRGLEIYERMKLEGISANEAAFTSIARLAVAKRDGDLAFSLVKEMTTSGITPKLRSYG 163
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
PAL + + VDKA V++HM GV PEE EL+ LL +S++AG RVY +LH+LR S
Sbjct: 164 PALYTYFKSNQVDKAFEVDDHMRSFGVQPEEMELQILLELSLKAGLDQRVYSVLHRLRRS 223
Query: 487 VRKVSPSTADVIAKWFNSKEAARLGK-KKWNESLIKDTMENKGGGWHGLGWLGKGKWIVS 545
VR+VSPSTA I +WF+S A+ G KK+++ ++ + +GGG LGW+G G W V
Sbjct: 224 VREVSPSTATTIERWFSSDAASSSGSDKKYDDEDVRRALAAQGGGGLELGWIGSGGWSVK 283
Query: 546 HTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNS-SFQKFQKWLDYYGP 604
T + +C+ C K+A +DL+ ET +FAE++A++A ++ER++ SF++FQ+W+ +GP
Sbjct: 284 RTALDASGVCESCRHKMAAVDLNAEETNRFAENLAALACEKERDANSFKEFQEWMAEHGP 343
Query: 605 FEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQ 660
F+A+VD ANV L++Q F +++N+VV + + K PL++LH RR+TG
Sbjct: 344 FDAIVDGANVALFNQNFSAGGFSFSQLNSVVTELSNQ--HGKSPLVILHKRRVTGGPAAS 401
Query: 661 PVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFP 720
P ++ L+++W A+ALY TGSNDDWYWLYAA+ KCLLV+NDEMRDH FQ+LGND FP
Sbjct: 402 PQSQELLKQWTAANALYTAATGSNDDWYWLYAAVTCKCLLVSNDEMRDHLFQMLGNDLFP 461
Query: 721 RWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEE-------RR 773
RWKERHQV+ P F MPPP S VIQE E G+WH PI+ D +DE R
Sbjct: 462 RWKERHQVKLRALSYNPFFDMPPPYSTVIQECENGSWHFPISRGNDENDEAEEPRKQPRS 521
Query: 774 WLCVTR 779
WLC+TR
Sbjct: 522 WLCITR 527
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 50/68 (73%)
Query: 177 DEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLC 236
+ K + KK + +LR +L+ CSK GDV GA+ +YD ++ +G+KL QYHYNVLLYLC
Sbjct: 35 ESKRCVQKKKKFTPDSELRFKLESCSKVGDVTGALDIYDSSKDQGVKLSQYHYNVLLYLC 94
Query: 237 SSAAVGVV 244
SSAA+GV+
Sbjct: 95 SSAALGVI 102
>gi|224103055|ref|XP_002312906.1| predicted protein [Populus trichocarpa]
gi|222849314|gb|EEE86861.1| predicted protein [Populus trichocarpa]
Length = 482
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/422 (49%), Positives = 279/422 (66%), Gaps = 14/422 (3%)
Query: 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423
++ A + GF I++ M + + NEAS+TAV R+A + GDGD AFD+VK + + PRLR
Sbjct: 69 EELALRCGFRIFDHMVSNGIKPNEASITAVARLAAAKGDGDYAFDLVKNVGAYNELPRLR 128
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+Y PAL FC + KA VEEHM GV EE E+ ALL+VSVE+ RVY L KL
Sbjct: 129 TYDPALFCFCEKLEAHKAYEVEEHMGSMGVGLEEGEIAALLKVSVESRNEKRVYGYLQKL 188
Query: 484 RTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWI 543
R VR V TA VI WF E + + + + L+++ + GGGWHGLGW+GKGKW+
Sbjct: 189 RKMVRCVRGETAKVIEHWFAVFEGSGV---ELDVDLVREAVSRNGGGWHGLGWIGKGKWV 245
Query: 544 VSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYG 603
+ +V C CCGE+L +D+D ETE+FAESVA +A++RE ++F +FQ WL+ +
Sbjct: 246 LKRGSVDVGGKCCCCGEQLVSVDIDDDETERFAESVAGLAMQREVKANFSEFQNWLEEHA 305
Query: 604 PFEAVVDAANVGLYSQRNFKPA------RVNAVVNGIRQKFPSKKWPLIVLHNRRITGHK 657
+EA+VD AN+GLY Q+NF +++AVV + + KKWPLI++HN+R+
Sbjct: 306 NYEAIVDGANIGLY-QQNFAEGGFSISQQLDAVVKDLYNQ-SGKKWPLIIMHNKRLRA-L 362
Query: 658 MDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGND 717
+ P R LI++W D LY TP GSNDDWYWLYAA+K +CLLVTNDEMRDH F+LLG+D
Sbjct: 363 LQNPSTRELIQEWIEKDVLYTTPQGSNDDWYWLYAAVKLRCLLVTNDEMRDHIFELLGSD 422
Query: 718 FFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCV 777
FF +WKERHQVR++F E MPP SVVIQESE G+WH+P+A +D + WLCV
Sbjct: 423 FFIKWKERHQVRYTFVKGKLELQMPPLFSVVIQESEHGSWHVPVAGNG--NDSPQSWLCV 480
Query: 778 TR 779
+R
Sbjct: 481 SR 482
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237
+++ + Q L+ SK D+ AI LYD A + +L Q+ +N LLYLCS
Sbjct: 10 NQTPESQFNYNLNFYSKSKDLHSAISLYDTAISQDTRLNQHGFNTLLYLCS 60
>gi|242074900|ref|XP_002447386.1| hypothetical protein SORBIDRAFT_06g034140 [Sorghum bicolor]
gi|241938569|gb|EES11714.1| hypothetical protein SORBIDRAFT_06g034140 [Sorghum bicolor]
Length = 528
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/392 (54%), Positives = 269/392 (68%)
Query: 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR 421
D+ A QRGF+I+ +M D V NEA+LT+V R+A + D MAF +V+RM + G PR
Sbjct: 133 DSSTAAAQRGFDIFARMEADGVQPNEATLTSVARLAAATRDPAMAFSVVRRMAAAGTPPR 192
Query: 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481
LRSYGPAL +C+ D D A VE HM GV PEEPEL ALLRV+ + GK D VY LLH
Sbjct: 193 LRSYGPALFAYCDAKDADGAKQVEAHMDASGVVPEEPELAALLRVNADKGKADEVYRLLH 252
Query: 482 KLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGK 541
+ R VR+V +TA V+ WF S A++ G KW+ S +K+ + GGGWHG GWLGKG
Sbjct: 253 RTRALVRQVCDTTAQVVEAWFRSDAASQAGVDKWDPSKVKEGVVKGGGGWHGQGWLGKGA 312
Query: 542 WIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDY 601
W V T + D C+ CGEKL ID+DP ET+ FA S+ +AIKRE F FQ WL
Sbjct: 313 WSVGWTEMDKDGTCQRCGEKLVCIDIDPSETDNFANSLTELAIKREVKEDFLGFQNWLRR 372
Query: 602 YGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQP 661
+GPF+AV+DAANVGLY+ + F ++VN+VVN I++ SKK PLI+LH R+ G P
Sbjct: 373 HGPFDAVIDAANVGLYNSKAFSFSQVNSVVNAIQRVTKSKKLPLIILHRNRVNGGPAKAP 432
Query: 662 VNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPR 721
N+ ++E W+NA ALYATP GSNDDWYWLYAA+ + LLVTNDEMRDH FQLLG FFPR
Sbjct: 433 YNQKILESWRNAGALYATPPGSNDDWYWLYAAVSCRSLLVTNDEMRDHLFQLLGTSFFPR 492
Query: 722 WKERHQVRFSFSDAGPEFYMPPPCSVVIQESE 753
WKE+HQVR +FS GP ++PPP S+VIQ E
Sbjct: 493 WKEKHQVRLTFSGRGPTLHLPPPYSIVIQVME 524
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 194 LRVELDMCSKRGDVMGAIRLYDKAQRE--GIKLGQYHYNVLLYLCS-SAAVGVVKPAKSG 250
LR +LDMCS+ D+ A+RLYD A + L +HYN LLYLCS +AA + +
Sbjct: 78 LRHQLDMCSRNADLTTALRLYDDALSPDTPVPLSLHHYNCLLYLCSNAAATDTDTDSSTA 137
Query: 251 SGMRTLDTF 259
+ R D F
Sbjct: 138 AAQRGFDIF 146
>gi|406855802|pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
gi|406855804|pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/424 (52%), Positives = 289/424 (68%), Gaps = 2/424 (0%)
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+E + RGF+I+++ +D+V NEA+ T R+A++ D + AFD VK+ K+ GI
Sbjct: 78 TESSPNPGLSRGFDIFKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQ 137
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
PRLRSYGPAL FC GD DKA V+ H +E V PEEPEL ALL+VS + D+VY
Sbjct: 138 PRLRSYGPALFGFCRKGDADKAYEVDAHXVESEVVPEEPELAALLKVSXDTKNADKVYKT 197
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539
L +LR VR+VS ST D I +WF S+ A + G KKW+ I+D + + GGGWHG GWLG
Sbjct: 198 LQRLRDLVRQVSKSTFDXIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGT 257
Query: 540 GKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWL 599
GKW V T + +CKCC EKL ID++P+ETE FA S+ +A +RE ++F +FQ+WL
Sbjct: 258 GKWNVKRTEXDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWL 317
Query: 600 DYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
+ +GPF+AV+D AN GL +QR+F ++N V +Q PSK+ PL++LH R+ G
Sbjct: 318 ERHGPFDAVIDGANXGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPAT 377
Query: 660 QPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFF 719
P NRAL+EKWKNA ALYATP GSNDDWYWLYAA+ KCLLVTNDE RDH FQLLGN FF
Sbjct: 378 YPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEXRDHLFQLLGNSFF 437
Query: 720 PRWKERHQVRFSFS-DAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVT 778
PRWKE+HQVR S + + G + PPP S+VIQESE G WH+P + + D R+WLC
Sbjct: 438 PRWKEKHQVRISVTREDGLKLNXPPPYSIVIQESEDGTWHVPXSVEDDL-QTSRQWLCAK 496
Query: 779 RANS 782
R+ +
Sbjct: 497 RSKT 500
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 55/86 (63%), Gaps = 4/86 (4%)
Query: 178 EKGSKKSKK---DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234
E S+K+KK +S + L+ +LD CSK+GDV+ A+RLYD+A+R G++L QYHYNVLLY
Sbjct: 10 ENLSRKAKKKAIQQSPEALLKQKLDXCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLY 69
Query: 235 LCSSAAVGVVKPAKSGSGMRTLDTFE 260
+CS A G R D F+
Sbjct: 70 VCSLAEAATESSPNPGLS-RGFDIFK 94
>gi|224080794|ref|XP_002306233.1| predicted protein [Populus trichocarpa]
gi|222849197|gb|EEE86744.1| predicted protein [Populus trichocarpa]
Length = 557
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/425 (48%), Positives = 278/425 (65%), Gaps = 14/425 (3%)
Query: 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423
K + Q GF +++ M + + NEAS+TAV R+A + GDGD AFD+VK + PRLR
Sbjct: 72 KDLSLQYGFRVFDHMVSNGIKPNEASITAVARLAAAKGDGDYAFDLVKNIGVYNELPRLR 131
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+Y PAL +C + DKA VEEHM GV EE E+ ALL+VSVE + +RVY L KL
Sbjct: 132 TYDPALFCYCEKLEGDKAYEVEEHMRRIGVGLEEGEIAALLKVSVETRREERVYEYLQKL 191
Query: 484 RTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWI 543
R VR V TA VI WF E + + + L+++ + GGGWHGLGW+GK KW+
Sbjct: 192 RKMVRCVREETAKVIEHWFEVFEGNGV---ELDVGLVREAVSRNGGGWHGLGWIGKEKWV 248
Query: 544 VSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYG 603
V +V C CCGE+L +D+D ETE+FAESVA +A++RE ++F +FQ WL+ +
Sbjct: 249 VRRGSVNAGGKCCCCGEQLVSVDIDDDETERFAESVAGLAMEREVKANFSEFQNWLEKHA 308
Query: 604 PFEAVVDAANVGLYSQRNFKPA------RVNAVVNGIRQKFPSKKWPLIVLHNRRITGHK 657
+EA++D AN+GLY Q+NF +++AV+ + + KK PL++LHN+R+
Sbjct: 309 NYEAIMDGANIGLY-QQNFAEGGFSISQQLDAVIKDLYNQ-SGKKGPLVILHNKRLRA-L 365
Query: 658 MDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGND 717
+ P R LI++W D LY TP GSNDDWYWLYAA+K +CLLVTNDEMRDH F+LLG+D
Sbjct: 366 LQNPSTRELIQEWIEKDVLYTTPHGSNDDWYWLYAAVKLRCLLVTNDEMRDHIFELLGSD 425
Query: 718 FFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCV 777
FF +WKERHQVR++F E MPP S+VIQESE G+WH+P+A D +D + WLCV
Sbjct: 426 FFVKWKERHQVRYTFVKGNLELQMPPLFSIVIQESENGSWHVPVAG--DGNDSPQSWLCV 483
Query: 778 TRANS 782
+R S
Sbjct: 484 SRPRS 488
Score = 47.4 bits (111), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 182 KKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237
KK K +++ + Q L+ SK D+ AI LYD A + +L Q+++N LLYLCS
Sbjct: 8 KKPKSNQTPESQFSYNLNFYSKSKDLHSAISLYDTAISQNTRLNQHNFNTLLYLCS 63
>gi|356547141|ref|XP_003541975.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Glycine max]
Length = 550
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/426 (49%), Positives = 284/426 (66%), Gaps = 9/426 (2%)
Query: 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN--PR 421
K A GF + M V NEA++TAV R+A + GD D AF++VK M N PR
Sbjct: 71 KPTALDYGFRAFRHMSALAVLPNEATVTAVARLAAAKGDADYAFELVKSMGKNYNNALPR 130
Query: 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481
LR+Y PAL FC D DKA VEEHM GV EE EL ALL+VS G+ D+VY LH
Sbjct: 131 LRTYDPALFCFCEMLDADKAYEVEEHMNGVGVSLEEAELAALLKVSARCGRVDKVYEYLH 190
Query: 482 KLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGK 541
+LR+SVR VS STA VI +WF +A+ +G+ +++ +K+ + GGGWHG GW+GKG
Sbjct: 191 RLRSSVRCVSESTAVVIEEWFRGSKASEVGEAEFDAGRVKEGVLRNGGGWHGQGWVGKGD 250
Query: 542 WIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDY 601
W+VS T+V D C CCG++L +D+D +ETEKFA SVA++A +RE ++F +FQ WL+
Sbjct: 251 WVVSRTSVVADGHCCCCGQQLVCVDIDDVETEKFAGSVAALAFEREVKANFSEFQAWLEK 310
Query: 602 YGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHK 657
+ +EA+VD AN+GLY Q F ++++ VV + + KKWPL+VLHN+R+ G
Sbjct: 311 HASYEAIVDGANIGLYQQNFADGGFNISQLDDVVKELYNR-SGKKWPLVVLHNKRLRG-L 368
Query: 658 MDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGND 717
M+ P +R L+E+W LY TP GSNDDWYWL+AA+K +CLLVTNDEMRDH F+L+G++
Sbjct: 369 MENPSSRRLVEEWMKNGVLYTTPNGSNDDWYWLFAAVKLRCLLVTNDEMRDHIFELIGSN 428
Query: 718 FFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCV 777
FF +WKERHQV ++F + MPP S+VIQESEKG WH+P+ S + R WLC+
Sbjct: 429 FFNQWKERHQVHYTFVKGNLKLQMPPSYSLVIQESEKGYWHVPLVSGTSCES-TRCWLCI 487
Query: 778 TRANSH 783
TR + H
Sbjct: 488 TRPSGH 493
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 177 DEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLC 236
+E KK K R+ + + + EL+ CSK D+ GAI LYD A +L Q+H+N LLYLC
Sbjct: 2 EEHPKKKKKGCRNPETKFQFELNSCSKAKDLRGAISLYDDAVSNNTRLNQHHFNALLYLC 61
Query: 237 S-SAAVGVVKPAKSGSGMRT---LDTFEVSTMNSTELGDSRDMDNNGQLDYG 284
S S A +KP G R + V +T +R G DY
Sbjct: 62 SNSVADPSLKPTALDYGFRAFRHMSALAVLPNEATVTAVARLAAAKGDADYA 113
>gi|168063907|ref|XP_001783909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664592|gb|EDQ51306.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 522
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 230/438 (52%), Positives = 299/438 (68%), Gaps = 13/438 (2%)
Query: 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMK 414
D ++ + + +RGFE+YE M VP NEA+ TAV R+A++ DGD+AFDMVK+M
Sbjct: 84 DSLKPQKKQRILYMKRGFEVYEAMKSQGVPPNEATFTAVARLAVAKEDGDLAFDMVKQMA 143
Query: 415 SLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474
++PRLRSY PAL +C + KA V++HM + GV EE ELEALL+VSV AG D
Sbjct: 144 EANLSPRLRSYAPALYTYCKLKNHKKAFEVDDHMKKSGVALEESELEALLKVSVGAGLED 203
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE----SLIKDTMENKGGG 530
+VY LLH+LRT+VR VSPS +VI +WF S AA GK W +K E+ GGG
Sbjct: 204 KVYSLLHRLRTTVRDVSPSAVEVIQQWFTSSAAATAGKSNWEHLPGPEYVKKATESCGGG 263
Query: 531 WHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRE-RN 589
WHGLGWLG+G W V + V +C+ CGE LA IDLDP ETE FA+S++ +A +RE +N
Sbjct: 264 WHGLGWLGRGTWEVKSSVVDDHGVCQECGEPLATIDLDPQETEMFAQSLSRMACQREAKN 323
Query: 590 SSFQKFQKWLDYYGPFEAVVDAANVGLYSQRN----FKPARVNAVVNGIRQKFPSKKWPL 645
+ F+KFQ WLD +GPF+A+VD ANVGLY+ F ++N+VV GI+++ K+ PL
Sbjct: 324 NEFKKFQGWLDRHGPFDAIVDGANVGLYNSNTPNGGFNFYQLNSVVTGIQKRLGLKREPL 383
Query: 646 IVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDW--YWLYAAIKFKCLLVTN 703
I+LH+RR G D ++ WK +++Y TPTGSNDDW YWLYAA++F+C+LVTN
Sbjct: 384 ILLHHRRTKGGPADSSFAARMLSNWKENNSIYTTPTGSNDDWYVYWLYAAVRFRCVLVTN 443
Query: 704 DEMRDHTFQLLGNDFFPRWKERHQ-VRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIA 762
DEMRDH F LLGNDFFP+WKERHQ VR++ + G F+MPPP S VIQES KG+WH+P +
Sbjct: 444 DEMRDHLFSLLGNDFFPKWKERHQVVRYTINREGLVFHMPPPFSTVIQESHKGSWHVPKS 503
Query: 763 SKQDYDD-EERRWLCVTR 779
K D D R WLCVTR
Sbjct: 504 GKNDEDVLVPREWLCVTR 521
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 171 KVRGITDEKGSKKSKKDRSEQFQ------LRVELDMCSKRGDVMGAIRLYDKAQREG-IK 223
K G D +K K+ R++ Q LR LDMCSK DV A+ +YDK +EG I
Sbjct: 6 KNHGTPDSSYAKGGKQPRAKNKQYAPEQDLRRALDMCSKHADVKQALEIYDKTCKEGKIA 65
Query: 224 LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEV 261
QY+YN++LYLCSSAA +KP K + FEV
Sbjct: 66 FNQYNYNIILYLCSSAATDSLKPQKKQRILYMKRGFEV 103
>gi|115442469|ref|NP_001045514.1| Os01g0968000 [Oryza sativa Japonica Group]
gi|57899860|dbj|BAD87696.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113535045|dbj|BAF07428.1| Os01g0968000 [Oryza sativa Japonica Group]
Length = 548
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/415 (47%), Positives = 268/415 (64%), Gaps = 12/415 (2%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKS-LGINPRLRSYGPA 428
++ M +EA++T++ R+ S D AFD+V M+ G+ PRLRSY P
Sbjct: 88 VFSHMLGSGASPSEATITSLARVTASDASNPAAADEAFDLVATMRDKYGVAPRLRSYSPV 147
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L+ F G+ KA +V+ HM V PEEPE+ ALL VS +AG D+VY +HKL +V
Sbjct: 148 LAAFRRAGEAGKAYAVDAHMEASAVAPEEPEIAALLDVSAKAGDADKVYEYMHKLSRTVD 207
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
V TA+V+ WF S +AA GK +W+ +KD + GGG H LGWLG G W V
Sbjct: 208 CVGEETAEVLEGWFRSGKAAMAGKAEWDACKVKDAIVANGGGCHRLGWLGTGPWTVQRVR 267
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAV 608
VGGD C+ CG +LA +D+D ET++FA+SVAS+A++RE +F +FQ+WL+ +G +EA+
Sbjct: 268 VGGDGQCEGCGCRLACVDIDVEETQRFADSVASLALQRETKINFSQFQEWLEEHGAYEAI 327
Query: 609 VDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNR 664
VD AN+ LY Q F +++AVV +R ++ + KWPL+VLHN+RI M+ NR
Sbjct: 328 VDGANIALYQQNFAEGGFSLTQLDAVVTELRDRY-NGKWPLVVLHNKRIA-KLMENASNR 385
Query: 665 ALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKE 724
LIE W+ ALY +P GSNDDWYWLYAAI+ CLLVTNDEMRDH F+LLG+ FFP+WK+
Sbjct: 386 HLIETWRANGALYTSPIGSNDDWYWLYAAIRLNCLLVTNDEMRDHIFELLGSSFFPKWKQ 445
Query: 725 RHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTR 779
RHQV+++FS MPPP S IQESE G+WH+P+ K DD R WLC+ R
Sbjct: 446 RHQVKYTFSKGKAVLMMPPPYSSEIQESEMGSWHVPMEEKSG-DDRARIWLCIDR 499
>gi|297799862|ref|XP_002867815.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313651|gb|EFH44074.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 517
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 202/428 (47%), Positives = 276/428 (64%), Gaps = 17/428 (3%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRS 424
A RGF+I+++M + NE+S+TAV R+A + GDGD AF +VK + +G PRLR+
Sbjct: 89 AIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDIVVVGGVSVPRLRT 148
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC + + +K VEEHM G+ EE E+ ALL+VS G+ ++VY LHKLR
Sbjct: 149 YAPALLCFCESLEAEKGYEVEEHMDASGIMLEEAEISALLKVSAATGRENKVYRYLHKLR 208
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKK--WNESLIKDTMENKGGGWHGLGWLGKGKW 542
+ VS T+ I +WF +A+ + K + L++ + GGGWHGLGW+G+GKW
Sbjct: 209 ECIGCVSEETSKTIEEWFYGVKASEISDKTIGCDIELLRAAVSKNGGGWHGLGWVGEGKW 268
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
IV V C CGE LA +D + +ETE F S+ ++A++R E + F +F
Sbjct: 269 IVKKGNVSPAGKCLSCGEHLACVDTNEVETENFVNSLVALAMERKAKMNSCEPMADFSEF 328
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q+WL+ +G +EA++D AN+GLY Q F ++ AVV + K +KK PL++LH +
Sbjct: 329 QEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGNKKQPLVLLHKK 388
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTF 711
R+ + P +R L+E+W + + LYATP GSNDDWYWLYAA K KCLLVTNDEMRDH F
Sbjct: 389 RVNA-LLGNPNHRNLVEEWIDNNVLYATPPGSNDDWYWLYAAAKLKCLLVTNDEMRDHIF 447
Query: 712 QLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEE 771
+LL N FF +WKERHQVRF+F + MPPP SVVIQESEKG+WHIPI S QD ++
Sbjct: 448 ELLSNSFFEKWKERHQVRFTFVKGCLKLEMPPPFSVVIQESEKGSWHIPIKS-QDNEESS 506
Query: 772 RRWLCVTR 779
R W+C+TR
Sbjct: 507 RSWMCITR 514
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 179 KGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKA-QREGIKLGQYHYNVLLYLCS 237
K +KK K R+ + L + L CSKR D+ A+ LYD A I+L Q H+ LLYLCS
Sbjct: 18 KPNKKQKGSRNPEKSLLINLHSCSKRKDLSAALALYDAAITSSDIRLNQQHFQSLLYLCS 77
Query: 238 S 238
+
Sbjct: 78 A 78
>gi|186512202|ref|NP_193921.2| proteinaceous RNase P 3 [Arabidopsis thaliana]
gi|426020118|sp|F4JKB6.1|PRRP3_ARATH RecName: Full=Proteinaceous RNase P 3
gi|332659121|gb|AEE84521.1| proteinaceous RNase P 3 [Arabidopsis thaliana]
Length = 576
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/431 (46%), Positives = 276/431 (64%), Gaps = 17/431 (3%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRS 424
A RGF+I+++M + NE+S+TAV R+A + GDGD AF +VK + ++G PRLR+
Sbjct: 148 AIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 207
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC+ + +K VE+HM G+ EE E+ ALL+VS G+ ++VY L KLR
Sbjct: 208 YAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLR 267
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE--SLIKDTMENKGGGWHGLGWLGKGKW 542
V VS T+ I +WF +A+ + L++ + GGGWHGLGW+G+GKW
Sbjct: 268 ECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKW 327
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
IV V C C E LA +D + +ETE F S+ ++A++R E + F +F
Sbjct: 328 IVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEPMADFSEF 387
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q+WL+ +G +EA++D AN+GLY Q F ++ AVV + K SKK PLI+LH +
Sbjct: 388 QEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQPLILLHKK 447
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTF 711
R+ ++ P +R L+E+W N + LYATP GSNDDWYWLYAA K KCLLVTNDEMRDH F
Sbjct: 448 RVNA-LLENPNHRNLVEEWINNNVLYATPPGSNDDWYWLYAAAKLKCLLVTNDEMRDHIF 506
Query: 712 QLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEE 771
+LL N FF +WKERHQVRF+F + MPPP SVVIQESEKG+WH+PI S QD ++
Sbjct: 507 ELLSNSFFQKWKERHQVRFTFVKGCLKLEMPPPFSVVIQESEKGSWHVPITS-QDKEESL 565
Query: 772 RRWLCVTRANS 782
R W+C+TR +S
Sbjct: 566 RSWMCITRQSS 576
Score = 44.3 bits (103), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 194 LRVELDMCSKRGDVMGAIRLYDKA-QREGIKLGQYHYNVLLYLCSS 238
L + L CSKR D+ A+ LYD A I+L Q H+ LLYLCS+
Sbjct: 92 LLINLHSCSKRKDLSAALALYDAAITSSDIRLNQQHFQSLLYLCSA 137
>gi|110741661|dbj|BAE98777.1| hypothetical protein [Arabidopsis thaliana]
Length = 517
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/431 (46%), Positives = 276/431 (64%), Gaps = 17/431 (3%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRS 424
A RGF+I+++M + NE+S+TAV R+A + GDGD AF +VK + ++G PRLR+
Sbjct: 89 AIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 148
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC+ + +K VE+HM G+ EE E+ ALL+VS G+ ++VY L KLR
Sbjct: 149 YAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLR 208
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE--SLIKDTMENKGGGWHGLGWLGKGKW 542
V VS T+ I +WF +A+ + L++ + GGGWHGLGW+G+GKW
Sbjct: 209 ECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKW 268
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
IV V C C E LA +D + +ETE F S+ ++A++R E + F +F
Sbjct: 269 IVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEPMADFSEF 328
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q+WL+ +G +EA++D AN+GLY Q F ++ AVV + K SKK PLI+LH +
Sbjct: 329 QEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQPLILLHKK 388
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTF 711
R+ ++ P +R L+E+W N + LYATP GSNDDWYWLYAA K KCLLVTNDEMRDH F
Sbjct: 389 RVNA-LLENPNHRNLVEEWINNNVLYATPPGSNDDWYWLYAAAKLKCLLVTNDEMRDHIF 447
Query: 712 QLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEE 771
+LL N FF +WKERHQVRF+F + MPPP SVVIQESEKG+WH+PI S QD ++
Sbjct: 448 ELLSNSFFQKWKERHQVRFTFVKGCLKLEMPPPFSVVIQESEKGSWHVPITS-QDKEESL 506
Query: 772 RRWLCVTRANS 782
R W+C+TR +S
Sbjct: 507 RSWMCITRQSS 517
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 194 LRVELDMCSKRGDVMGAIRLYDKA-QREGIKLGQYHYNVLLYLCSS 238
L + L CSKR D+ A+ LYD A I+L Q H+ LLYLCS+
Sbjct: 33 LLINLHSCSKRKDLSAALALYDAAITSSDIRLNQQHFQSLLYLCSA 78
>gi|242046020|ref|XP_002460881.1| hypothetical protein SORBIDRAFT_02g036790 [Sorghum bicolor]
gi|241924258|gb|EER97402.1| hypothetical protein SORBIDRAFT_02g036790 [Sorghum bicolor]
Length = 526
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/421 (47%), Positives = 271/421 (64%), Gaps = 16/421 (3%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGD-----GDMAFDMVKRMK-SLGINPRLRSYGP 427
++ M P +EA++T++ R+ + D D AF++V MK G++PRLRSYGP
Sbjct: 64 VFAHMLQAGAPPSEATITSLARVIAAADDPGSSAADEAFELVATMKDKYGLSPRLRSYGP 123
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
L+ F + G+ KA +VE HM GV PEEPEL ALL VS AG D+VY +HKLR +V
Sbjct: 124 VLAAFRSAGEAAKAYAVEAHMTASGVSPEEPELAALLDVSSRAGDADKVYEYMHKLRQAV 183
Query: 488 RKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHT 547
VS TA V+ WF S +AA GK +WN + +KD + GGG H LGWLG G W +
Sbjct: 184 DCVSEETAGVVEAWFRSDKAAMAGKSEWNAAQVKDAIVANGGGCHRLGWLGTGPWTMQRV 243
Query: 548 TVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEA 607
VG D C C +LA ID+D ET KFA+SVA +A++RE ++F +FQ+WL+ ++A
Sbjct: 244 RVGADDQCAGCRYRLACIDIDMEETRKFADSVAGLALERETKTNFSRFQEWLEANKEYQA 303
Query: 608 VVDAANVGLYSQRNFKPA------RVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQP 661
+VD AN+ LY Q+NF +++AV+ +R ++ KWPL++LHN+RI M+
Sbjct: 304 IVDGANIALY-QQNFAEGGFSLTQQLDAVITELRDRY-HGKWPLVILHNKRI-AKLMENS 360
Query: 662 VNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPR 721
NR LIE W+ ALY +P+GSNDDWYWLYAAIK CLLVTNDEMRDH F+LLG+ FFP+
Sbjct: 361 SNRHLIETWRTNGALYTSPSGSNDDWYWLYAAIKLNCLLVTNDEMRDHIFELLGSSFFPK 420
Query: 722 WKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRAN 781
WK+RH+V+++F+ MPP S IQESE G+WHIP+ K D+ R WLC+ R
Sbjct: 421 WKQRHRVKYTFNKGKAVLVMPPSYSSEIQESEMGSWHIPMEEKSG-DERGRIWLCIGRGG 479
Query: 782 S 782
S
Sbjct: 480 S 480
>gi|302759989|ref|XP_002963417.1| hypothetical protein SELMODRAFT_80247 [Selaginella moellendorffii]
gi|300168685|gb|EFJ35288.1| hypothetical protein SELMODRAFT_80247 [Selaginella moellendorffii]
Length = 536
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 215/421 (51%), Positives = 283/421 (67%), Gaps = 11/421 (2%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
++G EI+E+M + V NEA+ TA+ R++++ DGD+AF++VK M + I P+LR YGP
Sbjct: 121 LRKGLEIFEQMQAENVAPNEATFTALARLSVAKRDGDLAFEIVKAMIAAKIPPKLRCYGP 180
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
AL V+ D +KA V HML HGV PEE ELE LL +S +A GDRVY LLH LR +V
Sbjct: 181 ALYVYFKRNDPEKAFEVYNHMLVHGVQPEEAELEVLLHLSSKACLGDRVYLLLHHLRETV 240
Query: 488 RKVSPSTADVIAKWFNSKEAARL-GKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
R VS ST VI +WF S A R+ G + ++ + KGGGWHGLGWLG+G+W V +
Sbjct: 241 RDVSQSTVSVIERWFKSDFAGRVTGNSLPGDFDVRCSSLAKGGGWHGLGWLGQGRWNVGY 300
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
T++ + +C C E++ ID+ P +T+ FA+ +AS+A KRE N+SF F+ WLD GPFE
Sbjct: 301 TSLTAEGVCCRCNEQMVTIDITPEDTDVFAKCIASLAFKRESNNSFGIFKDWLDRNGPFE 360
Query: 607 AVVDAANVGLYSQR-----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQP 661
VVD ANVG Y+QR NF A++ VV ++++ S KWPLIVLH R
Sbjct: 361 TVVDGANVGFYNQRFNGELNF--AQLETVVADVQRR--SGKWPLIVLHVGRTMKGSGRSS 416
Query: 662 VNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPR 721
+ L+ W NA ALY P GSNDDWYWLYAA+K K LLV+NDEMRDH FQLLG +FFP
Sbjct: 417 YAQQLLRHWSNAKALYIAPAGSNDDWYWLYAAVKCKSLLVSNDEMRDHIFQLLGREFFPT 476
Query: 722 WKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRAN 781
WKERHQVRF + GP F+MPPP S++IQE+E+G+WHIP++ D R+WLCVTR +
Sbjct: 477 WKERHQVRFHVTKHGPVFHMPPPYSIIIQETERGSWHIPVSGGDDISS-PRKWLCVTRGS 535
Query: 782 S 782
+
Sbjct: 536 T 536
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 173 RGITDEKGSKKSKKDRSEQFQL----RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYH 228
R + +++ S R ++F L R LD CSK GDV GA+ Y + RE +K Y+
Sbjct: 42 RRVEEQERRASSPSPRKKKFNLVSEVRFTLDTCSKFGDVNGALSAYS-SNREAVKFDLYN 100
Query: 229 YNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268
YNVLLYLCSSAA+G + G+ + + + E
Sbjct: 101 YNVLLYLCSSAALGEMMDGFLRKGLEIFEQMQAENVAPNE 140
>gi|194698092|gb|ACF83130.1| unknown [Zea mays]
Length = 521
Score = 404 bits (1038), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/416 (47%), Positives = 266/416 (63%), Gaps = 10/416 (2%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRM--AMSMGDGDMAFDMVKRMKS-LGINPRLRSYGPALS 430
++ M P +EA++T++ R+ A D AF++V MK G++PRLRSYGP L+
Sbjct: 63 VFAHMLQAAAPPSEATITSLARVIAADPASAADEAFELVATMKDKYGLSPRLRSYGPVLA 122
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV 490
F G+ KA +VE HM GV PEEPEL ALL VS AG D+VY +HKLR +V V
Sbjct: 123 AFRRAGEAAKAYAVEAHMTASGVSPEEPELAALLDVSSRAGDADKVYEYMHKLRQAVHCV 182
Query: 491 SPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVG 550
S TA V+ WF S EAA GK +W+ + +KD + GGG H LGWLG G W V VG
Sbjct: 183 SEETAGVVEAWFRSDEAATAGKPQWDAAQVKDAIVANGGGCHRLGWLGTGPWTVQRVRVG 242
Query: 551 GDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVD 610
C C LA ID+D ET++FA+SVA +A++RE ++F +FQ+WL+ ++A+VD
Sbjct: 243 DADQCGGCRFHLACIDIDMEETQRFADSVAGLALERETKTNFSRFQEWLEANKDYQAIVD 302
Query: 611 AANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
AN+ LY Q F +++ V+ +R ++ KWPL++LHN+RI+ M+ NR L
Sbjct: 303 GANIALYQQNFAEGGFSLTQLDGVITELRDRY-HGKWPLVILHNKRIS-KLMENSSNRHL 360
Query: 667 IEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERH 726
IE W+ ALY +P+GSNDDWYWLYAAIK CLLVTNDEMRDH F+LLG FFP+WK+RH
Sbjct: 361 IETWRTNGALYTSPSGSNDDWYWLYAAIKLNCLLVTNDEMRDHIFELLGPSFFPKWKQRH 420
Query: 727 QVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANS 782
+V+++F+ MPPP S +QESE G+WHIPI K ++ R WLC+ R S
Sbjct: 421 RVKYTFNKGKAVLVMPPPYSSELQESEMGSWHIPIEEKSG-NERGRIWLCIGRGGS 475
>gi|226491748|ref|NP_001150343.1| antiporter/ drug transporter/ transporter [Zea mays]
gi|195638562|gb|ACG38749.1| antiporter/ drug transporter/ transporter [Zea mays]
Length = 545
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/416 (47%), Positives = 266/416 (63%), Gaps = 10/416 (2%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRM--AMSMGDGDMAFDMVKRMKS-LGINPRLRSYGPALS 430
++ M P +EA++T++ R+ A D AF++V MK G++PRLRSYGP L+
Sbjct: 87 VFAHMLQAAAPPSEATITSLARVIAADPASAADEAFELVATMKDKYGLSPRLRSYGPVLA 146
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV 490
F G+ KA +VE HM GV PEEPEL ALL VS AG D+VY +HKLR +V V
Sbjct: 147 AFRRAGEAAKAYAVEAHMTASGVSPEEPELAALLDVSSRAGDADKVYEYMHKLRQAVHCV 206
Query: 491 SPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVG 550
S TA V+ WF S EAA GK +W+ + +KD + GGG H LGWLG G W V VG
Sbjct: 207 SEETAGVVEAWFRSDEAATAGKPQWDAAQVKDAIVANGGGCHRLGWLGTGPWTVQRVRVG 266
Query: 551 GDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVD 610
C C LA ID+D ET++FA+SVA +A++RE ++F +FQ+WL+ ++A+VD
Sbjct: 267 DADQCGGCRFHLACIDIDMEETQRFADSVAGLALERETKTNFSRFQEWLEANKDYQAIVD 326
Query: 611 AANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
AN+ LY Q F +++ V+ +R ++ KWPL++LHN+RI+ M+ NR L
Sbjct: 327 GANIALYQQNFAEGGFSLTQLDGVITELRDRY-HGKWPLVILHNKRIS-KLMENSSNRHL 384
Query: 667 IEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERH 726
IE W+ ALY +P+GSNDDWYWLYAAIK CLLVTNDEMRDH F+LLG FFP+WK+RH
Sbjct: 385 IETWRTNGALYTSPSGSNDDWYWLYAAIKLNCLLVTNDEMRDHIFELLGPSFFPKWKQRH 444
Query: 727 QVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANS 782
+V+++F+ MPPP S +QESE G+WHIPI K ++ R WLC+ R S
Sbjct: 445 RVKYTFNKGKTVLVMPPPYSSELQESEMGSWHIPIEEKSG-NERGRIWLCIGRGGS 499
>gi|224132016|ref|XP_002328164.1| predicted protein [Populus trichocarpa]
gi|222837679|gb|EEE76044.1| predicted protein [Populus trichocarpa]
Length = 557
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/425 (48%), Positives = 277/425 (65%), Gaps = 14/425 (3%)
Query: 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423
K + Q GF +++ M + + NEAS+TAV R+A + GDGD AFD+VK + PRLR
Sbjct: 72 KDLSLQYGFRVFDHMVSNGIKPNEASITAVARLAAAKGDGDYAFDLVKNIGVYNELPRLR 131
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+Y PAL +C + DKA VEEHM GV EE E+ ALL+VSVE + +RVY L KL
Sbjct: 132 TYDPALFCYCEKLEGDKAYEVEEHMRRIGVGLEEGEIAALLKVSVETRREERVYGYLQKL 191
Query: 484 RTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWI 543
R VR V TA VI WF E + + + L+++ + GGGWHGLGW+GK KW+
Sbjct: 192 RKMVRCVREETAKVIEHWFEVFEGNGV---ELDVGLVREAVSRNGGGWHGLGWIGKEKWV 248
Query: 544 VSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYG 603
V +V C CCG +L +D+D ETE+FAESVA +A++RE ++F +FQ WL+ +
Sbjct: 249 VRRGSVDAGGKCCCCGGQLVSVDIDDDETERFAESVAGLAMEREVKANFSEFQNWLEKHA 308
Query: 604 PFEAVVDAANVGLYSQRNFKPA------RVNAVVNGIRQKFPSKKWPLIVLHNRRITGHK 657
+EA++D AN+GLY Q+NF +++AV+ + + KK PLI+LHN+R+
Sbjct: 309 NYEAIMDGANIGLY-QQNFAEGGFSISQQLDAVIKDLYNQ-SGKKRPLIILHNKRLRA-L 365
Query: 658 MDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGND 717
+ P R LI++W D LY TP GSNDDWYWLYAA+K +C LVTNDEMRDH F+LLG+D
Sbjct: 366 LQNPSTRELIQEWIEKDVLYTTPHGSNDDWYWLYAAVKLRCWLVTNDEMRDHIFELLGSD 425
Query: 718 FFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCV 777
FF +WKERHQVR++F E MPP S+VIQESE G+WH+P+A D +D + WLCV
Sbjct: 426 FFVKWKERHQVRYTFVKGNLELQMPPLFSIVIQESENGSWHVPVAG--DGNDSPQSWLCV 483
Query: 778 TRANS 782
+R +S
Sbjct: 484 SRPSS 488
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 182 KKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237
KK K +++ + Q L+ SK D+ AI LYD A + +L Q+++N LLYLCS
Sbjct: 8 KKPKSNQTPESQFSYNLNFYSKSKDLHSAISLYDTAISQNTRLNQHNFNTLLYLCS 63
>gi|302776824|ref|XP_002971555.1| hypothetical protein SELMODRAFT_147976 [Selaginella moellendorffii]
gi|300160687|gb|EFJ27304.1| hypothetical protein SELMODRAFT_147976 [Selaginella moellendorffii]
Length = 421
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 215/420 (51%), Positives = 281/420 (66%), Gaps = 11/420 (2%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
++G EI+E+M + V NEA+ TA+ R++++ DGD+AF++VK M + I P+LR YGP
Sbjct: 6 LRKGLEIFEQMQAENVAPNEATFTALARLSVAKRDGDLAFEIVKAMIAAKIPPKLRCYGP 65
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
AL V+ D +KA V HML HGV PEE ELE LL +S +A GDRVY LLH LR +V
Sbjct: 66 ALYVYFKRNDAEKAFEVYNHMLVHGVQPEEAELEVLLHLSSKACLGDRVYLLLHHLRETV 125
Query: 488 RKVSPSTADVIAKWFNSKEAARL-GKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
R VS ST VI +WF S A R+ G + ++ + KGGGWHGLGWLG+G W V +
Sbjct: 126 RDVSQSTVSVIERWFKSDFAGRVTGNSLPGDFDVRCSSLAKGGGWHGLGWLGQGIWNVGY 185
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
T++ + +C C E++ ID+ P +T+ FA+ +AS+A KRE N+SF F+ WLD GPFE
Sbjct: 186 TSLTAEGVCCRCNEQMVTIDITPEDTDVFAKCIASLAFKRESNNSFGIFKDWLDRNGPFE 245
Query: 607 AVVDAANVGLYSQR-----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQP 661
VVD ANVG Y+QR NF A++ VV ++++ S KWPLIVLH R
Sbjct: 246 TVVDGANVGFYNQRFNGELNF--AQLETVVADVQRR--SGKWPLIVLHVGRTMKGSGRSS 301
Query: 662 VNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPR 721
+ L+ W NA ALY P GSNDDWYWLYAA+K K LLV+NDEMRDH FQLLG +FFP
Sbjct: 302 YAQQLLRHWSNAKALYIAPAGSNDDWYWLYAAVKCKSLLVSNDEMRDHIFQLLGREFFPT 361
Query: 722 WKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRAN 781
WKERHQVRF + GP F+MPPP S++IQE+E+G+WHIP++ D R+WLCVTR +
Sbjct: 362 WKERHQVRFHVTKHGPVFHMPPPYSIIIQETERGSWHIPVSGGDDISS-PRKWLCVTRGS 420
>gi|357131791|ref|XP_003567517.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Brachypodium distachyon]
Length = 603
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/389 (49%), Positives = 257/389 (66%), Gaps = 8/389 (2%)
Query: 396 MAMSMGDGDMAFDMVKRMKS-LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454
+A G GD AF++V M+ G+ PRLRSYGP L+ F G+ KA +VE HM V
Sbjct: 175 IASDPGGGDEAFELVATMRERYGLAPRLRSYGPVLAAFRRTGEAGKAYAVEAHMAASAVS 234
Query: 455 PEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKK 514
PEEPEL ALL VS +AG D+VY +HKLR +V VS TA+V+ WF S++AA GK +
Sbjct: 235 PEEPELAALLDVSAKAGDADKVYEYMHKLRRAVACVSLETAEVLEGWFQSEKAAMAGKAE 294
Query: 515 WNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEK 574
W+ +KD + GGG H LGWL G W+V TVG D C CG LA +D+D ET+
Sbjct: 295 WDAQQVKDAIVANGGGCHQLGWLQNGPWVVRRATVGTDGECGGCGCCLASVDIDMEETQT 354
Query: 575 FAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAV 630
FA+SV+ +A++RE ++F FQ+WL+ + +EA+VD AN+ LY Q F +++AV
Sbjct: 355 FADSVSGLALERETKANFSHFQEWLEAHQEYEAIVDGANIALYQQNFADGGFSLVQLDAV 414
Query: 631 VNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWL 690
V +R ++ S KWPL++LHN+RI M+ P +R LIE W+ ALY +P+GSNDDWYWL
Sbjct: 415 VTELRDRY-SGKWPLVILHNKRIA-KLMENPSDRHLIETWRANGALYTSPSGSNDDWYWL 472
Query: 691 YAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQ 750
YAAI CLLVTNDEMRDH F+LLG+ FF +WK+RH+V+++F+ MPPP S IQ
Sbjct: 473 YAAIGLNCLLVTNDEMRDHIFELLGSSFFHKWKQRHRVKYTFNKGKAVLLMPPPYSSEIQ 532
Query: 751 ESEKGNWHIPIASKQDYDDEERRWLCVTR 779
ESE G+WH+PI K D+ R WLC+ R
Sbjct: 533 ESETGSWHVPIEEKSG-DERVRTWLCIGR 560
>gi|296081503|emb|CBI20026.3| unnamed protein product [Vitis vinifera]
Length = 393
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/367 (51%), Positives = 242/367 (65%), Gaps = 40/367 (10%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
MKS GI P+LRSYGP L FC GD D+A V+ HM+E GV EEPEL ALL +SVE+ +
Sbjct: 1 MKSCGIPPKLRSYGPPLFGFCKKGDADRAYEVDAHMMESGVVAEEPELCALLGLSVESRR 60
Query: 473 GDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWH 532
DRVY ++H+LR SVR+VS STA+V+ +WFNS++AA M+ G
Sbjct: 61 VDRVYEMVHRLRASVRQVSESTAEVVERWFNSEDAA--------------GMDEAG---- 102
Query: 533 GLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSF 592
+C+ CGEKL ID+DP ETE FA S+ +A +RE + F
Sbjct: 103 ---------------------VCQSCGEKLVCIDIDPRETENFASSLTKLACQREVKADF 141
Query: 593 QKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRR 652
+FQ+WL +GPF+AVVD ANV L +Q++F +N+VVN +RQ PSK+ PL++LH R
Sbjct: 142 VQFQEWLQRHGPFDAVVDGANVSLINQKSFSFFELNSVVNRLRQISPSKRLPLVILHRSR 201
Query: 653 ITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQ 712
+TG P N+ LIE WK + ALYATP GSNDDWYWLYAA+ CLLVTNDEMRDH FQ
Sbjct: 202 VTGGPAQNPNNKKLIESWKKSGALYATPAGSNDDWYWLYAAVNCNCLLVTNDEMRDHLFQ 261
Query: 713 LLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEER 772
LLG FFPRWKE+HQVR + + GP +MPPP S+VIQESE+G+WH+P + D + R
Sbjct: 262 LLGTSFFPRWKEKHQVRLTITRRGPVLHMPPPYSIVIQESEQGSWHVPTVTGDDLET-PR 320
Query: 773 RWLCVTR 779
+WLC TR
Sbjct: 321 QWLCATR 327
>gi|296082798|emb|CBI21803.3| unnamed protein product [Vitis vinifera]
Length = 339
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/367 (50%), Positives = 240/367 (65%), Gaps = 40/367 (10%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
MKS GI P+LRSYGP L FC GD ++A V+ HM+E GV EEPEL ALL +SVE+
Sbjct: 1 MKSCGIPPKLRSYGPPLFGFCKKGDANRAYEVDAHMVESGVVAEEPELCALLGLSVESRW 60
Query: 473 GDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWH 532
D+VY ++H+LR SVR+VS STA+V+ +WFNS++AA M+ G
Sbjct: 61 VDQVYEMMHRLRASVRQVSESTAEVVERWFNSEDAA--------------GMDEAG---- 102
Query: 533 GLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSF 592
+C+ CGEKL ID+DP ETE FA S+ +A +RE + F
Sbjct: 103 ---------------------VCQSCGEKLVGIDIDPRETENFASSLTKLACQREVKADF 141
Query: 593 QKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRR 652
+FQ+WL ++GPF+AVVD ANV L +Q++F +N+VVN +RQ PSK+ PL++LH R
Sbjct: 142 VQFQEWLQWHGPFDAVVDGANVSLINQKSFSFFELNSVVNCLRQISPSKQLPLVILHRSR 201
Query: 653 ITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQ 712
+TG P N LI+ WK + ALYATP GSNDDWYWLYAA+ CLLVTNDEMRDH FQ
Sbjct: 202 VTGGPAQNPNNEKLIQSWKKSGALYATPAGSNDDWYWLYAAVNGNCLLVTNDEMRDHLFQ 261
Query: 713 LLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEER 772
LLG FFPRWKE+HQVR + + GP +MPPP S+VIQESE+G+WH+P D + R
Sbjct: 262 LLGTSFFPRWKEKHQVRLTMTRRGPVLHMPPPYSIVIQESEQGSWHVPTVIGDDLET-PR 320
Query: 773 RWLCVTR 779
+WLC TR
Sbjct: 321 QWLCATR 327
>gi|147844817|emb|CAN79022.1| hypothetical protein VITISV_022893 [Vitis vinifera]
Length = 509
Score = 377 bits (968), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/408 (46%), Positives = 255/408 (62%), Gaps = 44/408 (10%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
+K A GF I++ M V NEA++TAV R+A + DGD+AF++V+ M ++PRL
Sbjct: 66 SKALALDYGFRIFDHMVNSGVTPNEATITAVARLAAAKSDGDLAFEVVRTMGKYELSPRL 125
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
R+YGPAL FC N + +KA +VEEHM+ GV+PEEPEL ALL+VS E G+GD+VY LHK
Sbjct: 126 RTYGPALYWFCANLEGEKAWAVEEHMVSMGVHPEEPELAALLKVSAEMGRGDKVYAYLHK 185
Query: 483 LRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKW 542
LRT+VR VS STA++I WF + A+ +G I++ GGGWHG GW+GKGKW
Sbjct: 186 LRTAVRSVSESTAEIIEGWFCGEAASEVGGVDCCLGAIEEVALKNGGGWHGQGWIGKGKW 245
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYY 602
+V V C C E+LA +D+D ETE F ESVA++A++RE S+F++FQ WLD +
Sbjct: 246 LVCRAKVDSSGRCS-CREQLATVDIDRAETETFLESVAAMAMEREVRSNFREFQDWLDKH 304
Query: 603 GPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRI-------TG 655
+EA+VD AN+GLY Q+NF +++AVV + + KK PL++LHN+R +
Sbjct: 305 ADYEAIVDGANIGLY-QQNFANEQLDAVVKELYDR-SQKKRPLVILHNKRFRKLSENASN 362
Query: 656 HKMDQPV----------------------------------NRALIEKWKNADALYATPT 681
K P NR L+++W LY TP
Sbjct: 363 RKRILPTLDAVVKELYDRSQKKRPLVILHNKRFRKLSENASNRKLLQEWLTQGVLYTTPN 422
Query: 682 GSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVR 729
GSNDDWYWLYAA+K KCLLVTNDEMRDH F+LLG+ FF +WKERHQV+
Sbjct: 423 GSNDDWYWLYAAVKLKCLLVTNDEMRDHIFELLGSSFFLKWKERHQVQ 470
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237
+ R +LD CSKR D+ GA+ L++ A + +L YH+N LLYLC+
Sbjct: 14 KFRFDLDTCSKRRDLSGAVALFESAVSQNFRLIHYHFNALLYLCT 58
>gi|222619946|gb|EEE56078.1| hypothetical protein OsJ_04901 [Oryza sativa Japonica Group]
Length = 484
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/414 (45%), Positives = 254/414 (61%), Gaps = 32/414 (7%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
++ M +EA++T++ R+ S D AFD+V M+
Sbjct: 46 VFSHMLGSGASPSEATITSLARVTASDASNPAAADEAFDLVATMRD-------------- 91
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489
KA +V+ HM V PEEPE+ ALL VS +AG D+VY +HKL +V
Sbjct: 92 -------KPGKAYAVDAHMEASAVAPEEPEIAALLDVSAKAGDADKVYEYMHKLSRTVDC 144
Query: 490 VSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTV 549
V TA+V+ WF S +AA GK +W+ +KD + GGG H LGWLG G W V V
Sbjct: 145 VGEETAEVLEGWFRSGKAAMAGKAEWDACKVKDAIVANGGGCHRLGWLGTGPWTVQRVRV 204
Query: 550 GGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVV 609
GGD C+ CG +LA +D+D ET++FA+SVAS+A++RE +F +FQ+WL+ +G +EA+V
Sbjct: 205 GGDGQCEGCGCRLACVDIDVEETQRFADSVASLALQRETKINFSQFQEWLEEHGAYEAIV 264
Query: 610 DAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRA 665
D AN+ LY Q F +++AVV +R ++ + KWPL+VLHN+RI M+ NR
Sbjct: 265 DGANIALYQQNFAEGGFSLTQLDAVVTELRDRY-NGKWPLVVLHNKRIA-KLMENASNRH 322
Query: 666 LIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKER 725
LIE W+ ALY +P GSNDDWYWLYAAI+ CLLVTNDEMRDH F+LLG+ FFP+WK+R
Sbjct: 323 LIETWRANGALYTSPIGSNDDWYWLYAAIRLNCLLVTNDEMRDHIFELLGSSFFPKWKQR 382
Query: 726 HQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTR 779
HQV+++FS MPPP S IQESE G+WH+P+ K DD R WLC+ R
Sbjct: 383 HQVKYTFSKGKAVLMMPPPYSSEIQESEMGSWHVPMEEKSG-DDRARIWLCIDR 435
>gi|79557286|ref|NP_179256.3| proteinaceous RNase P 2 [Arabidopsis thaliana]
gi|75116712|sp|Q680B9.1|PRRP2_ARATH RecName: Full=Proteinaceous RNase P 2
gi|51970038|dbj|BAD43711.1| unnamed protein product [Arabidopsis thaliana]
gi|330251428|gb|AEC06522.1| proteinaceous RNase P 2 [Arabidopsis thaliana]
Length = 528
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 198/444 (44%), Positives = 282/444 (63%), Gaps = 24/444 (5%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRS 424
A RGFEI+++M + NEAS+T+V R+A + G+GD AF +VK S+G PRLR+
Sbjct: 89 AIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAFKVVKEFVSVGGVSIPRLRT 148
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC + +K VEEHM G+ EE E+ ALL+VS G+ ++VY LHKLR
Sbjct: 149 YAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLKVSAATGRENKVYRYLHKLR 208
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE--SLIKDTMENKGGGWHGLGWLGKGKW 542
V VS T +I +WF ++A +G ++++ + N GGGWHG GW+G+GKW
Sbjct: 209 EYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREAVLNNGGGWHGHGWVGEGKW 268
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
V V C C E+LA +D + +ET+KF +S+ ++A+ R E N F +F
Sbjct: 269 TVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKMNSCETNVVFSEF 328
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q WL+ +G +EA+VD AN+GLY Q +F +++ +V+ + ++ + KWPLI+LH R
Sbjct: 329 QDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMKELYRESGNNKWPLILLHKR 388
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTF 711
R+ ++ P +R L+E+W + LYATP GSNDDWYWLYAA K KCLLVTNDEMRDH F
Sbjct: 389 RVKT-LLENPTHRNLVEEWISNGVLYATPPGSNDDWYWLYAAAKLKCLLVTNDEMRDHIF 447
Query: 712 QLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEE 771
+LLG+ FF +WKERHQVR++F + MP P SVVIQESEKG+WH P++ + + ++
Sbjct: 448 ELLGSTFFQKWKERHQVRYTFVKGNLKLEMPSPFSVVIQESEKGSWHFPVSCENN-EESS 506
Query: 772 RRWLCVTRANSHMNRQNSYSSPKA 795
R W+C++ RQ+ SPK+
Sbjct: 507 RTWMCIS-------RQSILDSPKS 523
Score = 47.0 bits (110), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 182 KKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCSSAA 240
KK K R+ + L L+ CSK D+ A+ LYD A ++L Q H+ LLYLCS++
Sbjct: 21 KKKKVSRNPETNLLFNLNSCSKSKDLSAALALYDAAITSSEVRLSQQHFQTLLYLCSASI 80
Query: 241 VGV 243
+
Sbjct: 81 TDI 83
>gi|326517014|dbj|BAJ96499.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 544
Score = 370 bits (951), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 184/381 (48%), Positives = 249/381 (65%), Gaps = 9/381 (2%)
Query: 407 FDMVKRMKS-LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
F +V M+ G+ PRLRSY P L+ F GD KA +VE HM V PEEPE+ ALL
Sbjct: 120 FALVSTMRDKYGLAPRLRSYSPVLAAFRRAGDAGKAYAVEAHMAASAVSPEEPEVAALLE 179
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTME 525
VS +AG D+VY +HKLR +V V+ TA+V+ WF S+EAA GK +W+ +K+ +
Sbjct: 180 VSAKAGDADKVYEYMHKLRRAVGCVTEETAEVLEGWFRSEEAAAAGKAEWDACRVKEAIV 239
Query: 526 NKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIK 585
KGGG H LGWL G W V V D C CG +LA +D+D +T KFA+S++ +A++
Sbjct: 240 AKGGGCHQLGWLRTGPWTVQRVRVAADGECGGCGCRLASVDIDMEDTHKFADSISGLALE 299
Query: 586 RERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSK 641
RE ++F FQ+WL+ + +EA+VD AN+ LY Q F +++AVV +R ++ +
Sbjct: 300 RETKANFSHFQEWLEEHKEYEAIVDGANIALYQQNFSEGGFSLVQLDAVVTELRDRY-NG 358
Query: 642 KWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLV 701
KWPL+VLHN+RI M+ P NR LIE W+ ALY +P+GSNDDWYWLYAAI CLLV
Sbjct: 359 KWPLVVLHNKRI-AKLMETPSNRHLIEIWRANGALYTSPSGSNDDWYWLYAAIGLNCLLV 417
Query: 702 TNDEMRDHTFQLLG-NDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIP 760
TNDEMRDH F+LLG + FF +WK+RH+V+++F+ +PPP S IQESE G+WH+P
Sbjct: 418 TNDEMRDHIFELLGSSSFFYKWKQRHRVKYTFNKGKAVLVLPPPYSSEIQESETGSWHVP 477
Query: 761 IASKQDYDDEERRWLCVTRAN 781
I K D+ R WLC+ R +
Sbjct: 478 IEEKSG-DERARTWLCIGRTD 497
>gi|326509963|dbj|BAJ87198.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 588
Score = 370 bits (949), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 184/381 (48%), Positives = 249/381 (65%), Gaps = 9/381 (2%)
Query: 407 FDMVKRMK-SLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
F +V M+ G+ PRLRSY P L+ F GD KA +VE HM V PEEPE+ ALL
Sbjct: 164 FALVSTMRDKYGLAPRLRSYSPVLAAFRRAGDAGKAYAVEAHMAASAVSPEEPEVAALLE 223
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTME 525
VS +AG D+VY +HKLR +V V+ TA+V+ WF S+EAA GK +W+ +K+ +
Sbjct: 224 VSAKAGDADKVYEYMHKLRRAVGCVTEETAEVLEGWFRSEEAAAAGKAEWDACRVKEAIV 283
Query: 526 NKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIK 585
KGGG H LGWL G W V V D C CG +LA +D+D +T KFA+S++ +A++
Sbjct: 284 AKGGGCHQLGWLRTGPWTVQRVRVAADGECGGCGCRLASVDIDMEDTHKFADSISGLALE 343
Query: 586 RERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSK 641
RE ++F FQ+WL+ + +EA+VD AN+ LY Q F +++AVV +R ++ +
Sbjct: 344 RETKANFSHFQEWLEEHKEYEAIVDGANIALYQQNFSEGGFSLVQLDAVVTELRDRY-NG 402
Query: 642 KWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLV 701
KWPL+VLHN+RI M+ P NR LIE W+ ALY +P+GSNDDWYWLYAAI CLLV
Sbjct: 403 KWPLVVLHNKRI-AKLMETPSNRHLIEIWRANGALYTSPSGSNDDWYWLYAAIGLNCLLV 461
Query: 702 TNDEMRDHTFQLLG-NDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIP 760
TNDEMRDH F+LLG + FF +WK+RH+V+++F+ +PPP S IQESE G+WH+P
Sbjct: 462 TNDEMRDHIFELLGSSSFFYKWKQRHRVKYTFNKGKAVLVLPPPYSSEIQESETGSWHVP 521
Query: 761 IASKQDYDDEERRWLCVTRAN 781
I K D+ R WLC+ R +
Sbjct: 522 IEEKSG-DERARTWLCIGRTD 541
>gi|297836360|ref|XP_002886062.1| hypothetical protein ARALYDRAFT_899980 [Arabidopsis lyrata subsp.
lyrata]
gi|297331902|gb|EFH62321.1| hypothetical protein ARALYDRAFT_899980 [Arabidopsis lyrata subsp.
lyrata]
Length = 531
Score = 369 bits (947), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 198/449 (44%), Positives = 280/449 (62%), Gaps = 27/449 (6%)
Query: 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPR 421
+ A RGFEI+++M + NEAS+T+V R+A + GDGD AF +VK S+G PR
Sbjct: 86 RSLAIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGDGDYAFKVVKDFVSVGGVSIPR 145
Query: 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481
LR+Y PAL FC D D VEEHM G+ EE E+ ALL+VS G+ ++VY LH
Sbjct: 146 LRTYAPALLCFCERLDADMGYEVEEHMEAAGIALEEAEILALLKVSAATGRENKVYRYLH 205
Query: 482 KLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE--SLIKDTMENKGGGWHGLGWLGK 539
KLR V V T+ +I +WF ++A + ++++ + GGGWHG GW+G+
Sbjct: 206 KLREYVGCVCEETSKIIEEWFCGEKAGEVSDNGIGSDVGMLREAVLKNGGGWHGHGWVGE 265
Query: 540 GKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSF 592
GKW V V C C E+LA +D + +ET+KF +S+ ++A++R E F
Sbjct: 266 GKWTVKKGNVSSTGRCLSCREQLACVDTNEVETQKFVDSLVALAMERKAKMNSCETQVDF 325
Query: 593 QKFQKWLDYYGPFEAVVDAANVGLYSQRNFK------PARVNAVVNGIRQKFPSKKWPLI 646
+FQ WL+ +G +EA+VD AN+GLY Q+NF P ++ +VV + ++ + KWPLI
Sbjct: 326 SEFQDWLEKHGNYEAIVDGANIGLY-QQNFVDGSFSLPQQLESVVKELYRESGNNKWPLI 384
Query: 647 VLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEM 706
+LH RR+ ++ P +R L+E+W + LY TP GSNDDWYWLYAA K KCLLVTNDEM
Sbjct: 385 LLHKRRVRA-LLENPTHRNLVEEWISNGVLYPTPPGSNDDWYWLYAAAKLKCLLVTNDEM 443
Query: 707 RDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQD 766
RDH F+LLG+ FF +WKERHQVR++F + MP P SVVIQESEKG+WH P++ + +
Sbjct: 444 RDHIFELLGSSFFHKWKERHQVRYTFVKGNLKLEMPSPFSVVIQESEKGSWHFPVSCENN 503
Query: 767 YDDEERRWLCVTRANSHMNRQNSYSSPKA 795
++ R W+C++ RQ+ SPK+
Sbjct: 504 -EESSRTWMCIS-------RQSVLDSPKS 524
Score = 46.2 bits (108), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 182 KKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCSSA 239
KK K RS + L L+ CSK D+ A+ LYD A ++L Q H+ L+YLCS++
Sbjct: 21 KKKKISRSPETNLLFNLNSCSKSKDLSAALALYDAAVTSSELRLSQQHFQTLVYLCSAS 79
>gi|388517681|gb|AFK46902.1| unknown [Medicago truncatula]
Length = 392
Score = 368 bits (944), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 169/335 (50%), Positives = 233/335 (69%), Gaps = 7/335 (2%)
Query: 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLG 511
GV EE E+ ALL+VS + G+ DRVY LHKLR+ V V STA VI +WF S EA +G
Sbjct: 5 GVSLEEAEIAALLKVSAKKGRADRVYMYLHKLRSGVTCVEESTATVIEEWFQSSEAREVG 64
Query: 512 KKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIE 571
+ + + +++ + GGGWHGLGW+GKG W+VS +V D +C CGE+L +D+D E
Sbjct: 65 EGDLDVTRVREAVLRNGGGWHGLGWVGKGDWVVSRMSVDDDGICCGCGEQLVCVDIDDEE 124
Query: 572 TEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQR----NFKPARV 627
EKFA SVA++A++RE ++F +FQ WL+ +G +EA+VD ANVGLY Q F ++
Sbjct: 125 MEKFASSVAALAVEREVKANFSEFQGWLEKHGCYEAIVDGANVGLYQQNFADGGFSTNQL 184
Query: 628 NAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDW 687
+ VV + + +KWPL+VLHN+R+ G M+ P +R L+E+W LY TP GSNDDW
Sbjct: 185 DDVVKELYNQ-SGRKWPLVVLHNKRVKG-LMENPSSRKLVEEWMKNGVLYTTPNGSNDDW 242
Query: 688 YWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSV 747
YWLYA +K +CLLVTNDEMRDH F+LLG++FF +WKERHQV ++F + MPPP S+
Sbjct: 243 YWLYATVKLRCLLVTNDEMRDHIFELLGSNFFNQWKERHQVHYTFVKGNLKLQMPPPYSL 302
Query: 748 VIQESEKGNWHIPIASKQDYDDEERRWLCVTRANS 782
VIQESEKG+WH+P+A ++ + WLC+TRA++
Sbjct: 303 VIQESEKGSWHVPLAVDTS-NESSKPWLCITRASA 336
>gi|414878559|tpg|DAA55690.1| TPA: antiporter/ drug transporter/ transporter [Zea mays]
Length = 599
Score = 349 bits (896), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 184/417 (44%), Positives = 252/417 (60%), Gaps = 12/417 (2%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRM--AMSMGDGDMAFDMVKRMK-SLGINPRLRSYGPALS 430
++ M P +EA++T++ R+ A D AF++V MK G++PRLRSYGP L+
Sbjct: 141 VFAHMLQAAAPPSEATITSLARVIAADPASAADEAFELVATMKDKYGLSPRLRSYGPVLA 200
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV 490
F G+ KA +VE HM GV PEEPEL ALL VS AG D+VY +HKLR +V V
Sbjct: 201 AFRRAGEAAKAYAVEAHMTASGVSPEEPELAALLDVSSRAGDADKVYEYMHKLRQAVHCV 260
Query: 491 SPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVG 550
S TA V+ WF S EAA GK +W+ + +KD + GGG W+ +
Sbjct: 261 SEETAGVVEAWFRSDEAATAGKPQWDAAQVKDAIVANGGGC-PPPWVAWNPALDRAAGKS 319
Query: 551 GDA-LCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVV 609
GDA C C LA ID+D + +A++RE ++F +FQ+WL+ ++A+V
Sbjct: 320 GDADQCGGCRFHLACIDIDMERHRGLLIPLLGLALERETKTNFSRFQEWLEANKDYQAIV 379
Query: 610 DAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRA 665
D AN+ LY Q F +++ V+ +R ++ KWPL++LHN+RI+ M+ NR
Sbjct: 380 DGANIALYQQNFAEGGFSLTQLDGVITELRDRY-HGKWPLVILHNKRIS-KLMENSSNRH 437
Query: 666 LIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKER 725
LIE W+ ALY +P+GSNDDWYWLYAAIK CLLVTNDEMRDH F+LLG FFP+WK+R
Sbjct: 438 LIETWRTNGALYTSPSGSNDDWYWLYAAIKLNCLLVTNDEMRDHIFELLGPSFFPKWKQR 497
Query: 726 HQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANS 782
H+V+++F+ MPPP S +QESE G+WHIPI K ++ R WLC+ R S
Sbjct: 498 HRVKYTFNKGKAVLVMPPPYSSELQESEMGSWHIPIEEKSG-NERGRIWLCIGRGGS 553
>gi|38567837|emb|CAE05786.2| OSJNBb0020J19.15 [Oryza sativa Japonica Group]
Length = 344
Score = 338 bits (866), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 178/319 (55%), Positives = 218/319 (68%), Gaps = 6/319 (1%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
M + G P LRSYGPAL +C+ GD D A VE HM GV PEE EL ALLRV+ G+
Sbjct: 1 MATAGTAPHLRSYGPALFAYCDAGDADGATEVEAHMDASGVVPEEAELAALLRVNSARGR 60
Query: 473 GDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWH 532
D+VY LLH+ R +R+V+ +TA ++ WF S A+ G W+ + +K + N GGGWH
Sbjct: 61 PDQVYRLLHRARVLLRQVADATAQLLESWFASHAASEAGLDHWDATKVKQGLRNGGGGWH 120
Query: 533 GLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSF 592
G GWLGKG+W V+ T + D C CGEKL ID+DP ET FAESVA IAI R+ N F
Sbjct: 121 GQGWLGKGQWTVARTDMDKDGTCHRCGEKLVCIDIDPSETHSFAESVAQIAINRDAN--F 178
Query: 593 QKFQ----KWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
KFQ KWL+ +GPF+AV+DAANVGLY++ +F VN VVNGI++ SKK PLI+L
Sbjct: 179 VKFQIYCIKWLECHGPFDAVIDAANVGLYNRNSFSFYEVNRVVNGIQRITKSKKLPLIIL 238
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRD 708
H R+ G P N+ L+E W+ A ALYATP GSNDDWYWLYAA+ ++ LLVTNDEMRD
Sbjct: 239 HKNRVNGGPAKLPQNQKLLESWQRAGALYATPPGSNDDWYWLYAAVIYRSLLVTNDEMRD 298
Query: 709 HTFQLLGNDFFPRWKERHQ 727
H FQLLG FFPRWKE HQ
Sbjct: 299 HLFQLLGTSFFPRWKENHQ 317
>gi|242060047|ref|XP_002459169.1| hypothetical protein SORBIDRAFT_03g047110 [Sorghum bicolor]
gi|241931144|gb|EES04289.1| hypothetical protein SORBIDRAFT_03g047110 [Sorghum bicolor]
Length = 414
Score = 297 bits (761), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 138/283 (48%), Positives = 187/283 (66%), Gaps = 7/283 (2%)
Query: 504 SKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLA 563
S +AA GK +WN + +KD + GGG H LGWLG G W V VG D C C +LA
Sbjct: 89 SDKAATAGKSEWNAAQVKDAIVANGGGCHRLGWLGTGPWTVQRVRVGADDHCGGCRYRLA 148
Query: 564 IIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQR--- 620
ID+D ET +FA+SVA +A++RE ++F +FQ+WL+ ++A+VD AN+ LY Q
Sbjct: 149 CIDIDMEETRRFADSVAGLALERETKTNFSRFQEWLEANKEYQAIVDGANIALYQQNFAE 208
Query: 621 -NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYAT 679
F +++AV+ +R ++ KWPL++LH++RI M+ NR LIE W+ ALY +
Sbjct: 209 GGFSLTQLDAVITELRDRY-HGKWPLVILHDKRIA-KLMENSSNRHLIETWRTNGALYTS 266
Query: 680 PTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEF 739
P+GSNDDWYWLYAAIK CLLVTNDEMRDH F+LLG+ FFP+WK+RH+V+++F+
Sbjct: 267 PSGSNDDWYWLYAAIKLNCLLVTNDEMRDHIFELLGSSFFPKWKQRHRVKYTFNKGKAVL 326
Query: 740 YMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANS 782
MPPP S +QESE G WHIP+ K D+ R WLC+ R S
Sbjct: 327 VMPPPYSSEVQESEMGAWHIPMEEKSG-DERGRIWLCIGRGGS 368
>gi|4263696|gb|AAD15382.1| hypothetical protein [Arabidopsis thaliana]
Length = 416
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 135/263 (51%), Positives = 186/263 (70%)
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+E + RGF+I+++M +D+V NEA+ T R+A++ D +MAFDMVK+MK+ GI
Sbjct: 119 TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 178
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
PRLRSYGPAL FC GD DKA V+ HM+E V PEEPEL ALL+VS++ D+VY
Sbjct: 179 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT 238
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539
L +LR VR+VS ST D+I +WF S+ A + G KKW+ I+D + + GGGWHG GWLG
Sbjct: 239 LQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGT 298
Query: 540 GKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWL 599
GKW V T + + +CKCC EKL ID++P+ETE FA S+ +A +RE ++F +FQ+WL
Sbjct: 299 GKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWL 358
Query: 600 DYYGPFEAVVDAANVGLYSQRNF 622
+ +GPF+AV+D AN+GL +QR+F
Sbjct: 359 ERHGPFDAVIDGANMGLVNQRSF 381
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 178 EKGSKKSKK---DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234
E S+K+KK +S + L+ +LDMCSK+GDV+ A+RLYD+A+R G++L QYHYNVLLY
Sbjct: 51 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLY 110
Query: 235 LCSSAAVGVVKPAKSGSGMRTLDTFE 260
+CS A G R D F+
Sbjct: 111 VCSLAEAATESSPNPGLS-RGFDIFK 135
>gi|384253474|gb|EIE26949.1| hypothetical protein COCSUDRAFT_59444 [Coccomyxa subellipsoidea
C-169]
Length = 581
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 173/608 (28%), Positives = 275/608 (45%), Gaps = 101/608 (16%)
Query: 180 GSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239
G KK++K E LR ++ +K D +G + YD+A EGI +G + LLYLC
Sbjct: 61 GRKKARKMTPEG-GLRADIFKAAKENDPLGGLAAYDRAVAEGISMGNDLFETLLYLC--- 116
Query: 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYR 299
SG + D + + + D++ G+
Sbjct: 117 -----------SGGQAWD----AKLPAPAQTDAKSASQPGE------------------D 143
Query: 300 FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359
D + E GQ ++G+ Q L R ++++ S ++W +++
Sbjct: 144 VDARKAAHKEASTSGQATSGNGATPEQALQ-RESIDKAAHMTS--EEW---------VKV 191
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+ +RG E+++ + +E TA+ RMA + G D A D + + G++
Sbjct: 192 A--------RRGKELWQTLKERGGGKSEVCYTALARMAATEGKPDQALDAAREALATGLH 243
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
+LRS+ PAL +C G+VD A V+E + E + E E L+ V R +
Sbjct: 244 LKLRSFVPALKAYCAAGNVDAAFKVDELIAEQELDLTEDEYALLIGVCAYGAVWARAEGV 303
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539
L ++ + + T + ++F S AA+ LG+
Sbjct: 304 LTRIARELTALQEGTLAAVERFFRSPSAAQS--------------------------LGE 337
Query: 540 GK-WIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRE-RNSSFQKFQK 597
G+ W++ +V CC +L +DL P E FAE +A++A ++E R S F F+
Sbjct: 338 GQSWVLERCSVSESGQPSCCDGQLEAVDLSPEEYHAFAEGIAALARQKEKRPSDFDTFRA 397
Query: 598 WLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRI 653
W+D GP+ ++D ANV L+ Q F A+++AV++ +R++ P K PL++LH R+
Sbjct: 398 WVDRNGPYGCLIDGANVALFGQNWEAGGFSFAQISAVLDQLREERPDLK-PLLMLHQSRV 456
Query: 654 TGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTF 711
+ AL+E+ + Y TP GSNDDWYWLYAA+K L+V+ DEMRDH F
Sbjct: 457 KAELARERRAAALLERLRRDHLFYTTPFGSNDDWYWLYAAVKSGPDALIVSCDEMRDHLF 516
Query: 712 QLLGNDFFPRWKERHQVRFSFSDAG-PEFYMPPPCSVVIQESEKGN-WHIPIASKQDYDD 769
QLL +F +WK+RHQV F F+ G P P +V Q N W P A
Sbjct: 517 QLLAPKYFRKWKQRHQVYFKFAPKGRAVLTHPAPYTVCTQHLLVSNAWLFPSA------- 569
Query: 770 EERRWLCV 777
E +WLC
Sbjct: 570 ESDQWLCA 577
>gi|218189813|gb|EEC72240.1| hypothetical protein OsI_05356 [Oryza sativa Indica Group]
Length = 602
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 173/292 (59%), Gaps = 10/292 (3%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGD----GDMAFDMVKRMKS-LGINPRLRSYGPA 428
++ M +EA++T++ R+ S D AFD+V M+ G+ PRLRSY P
Sbjct: 88 VFSHMLGSGASPSEATITSLARVTASDASNPAAADEAFDLVATMRDKYGVAPRLRSYSPV 147
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L+ F GD KA +V+ HM V PEEPE+ AL VS +AG D+VY +HKL +V
Sbjct: 148 LAAFRRAGDAGKAYAVDAHMEASAVAPEEPEIAALFDVSAKAGDADKVYEYMHKLSRTVD 207
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
V TA+V+ WF S +AA GK +W+ +KD + GGG H LGWLG G W V
Sbjct: 208 CVGEETAEVLEGWFRSDKAAMAGKAEWDACNVKDAIVANGGGCHRLGWLGSGPWTVQRVR 267
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAV 608
VGG+ C+ CG +LA +D+D ET++FA+SVA +A++RE ++F +FQ+WL+ +G +EA+
Sbjct: 268 VGGNGQCEGCGCRLACVDIDVEETQRFADSVAGLALQRETKTNFSQFQEWLEGHGAYEAI 327
Query: 609 VDAANVGLYSQR----NFKPARVNAVVNGIRQKF-PSKKWPLIVLHNRRITG 655
VD AN+ LY Q F +++AVV +R ++ +P + + R TG
Sbjct: 328 VDGANIALYQQNFAEGGFSLTQLDAVVTELRDRYNVCDFYPGVSCGDPRFTG 379
>gi|307135991|gb|ADN33849.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 302
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 109/230 (47%), Positives = 153/230 (66%), Gaps = 1/230 (0%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
RG EIY++M D+V NEA+ T++ R+A +M D +MAF +VK+M+ I PRLRSYG
Sbjct: 73 VLSRGLEIYQQMITDKVSPNEATFTSLARIAGAMDDPEMAFSLVKQMEDYHIAPRLRSYG 132
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
PAL FC + A V+ HML V PEEPEL ALL++S + + D+VY LLH+LR +
Sbjct: 133 PALFGFCRKLMPEGAYEVDSHMLASAVEPEEPELSALLKLSSDVKRADKVYELLHRLRRT 192
Query: 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
VR+VS TA VI WFNS+ A+ +GKK W+ +++ + +GGGWHG GWLG GKW +
Sbjct: 193 VRQVSEPTAKVIEDWFNSESASEVGKKHWDVDKVREGIVRRGGGWHGEGWLGSGKWRLVR 252
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQ 596
T + + +C C +KL ID+DP ETE FA S+ +A +R ++ +F KF+
Sbjct: 253 TGIDDNGVCHSCAQKLVCIDIDPKETEDFASSLTKLANQRVKD-NFGKFR 301
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 182 KKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241
KK +D E LR +LDMCSK G V+ A+ LYD+A+ +G++L +HYNVLLYLCSS ++
Sbjct: 2 KKDSRDAPENV-LRYKLDMCSKYGQVVKALELYDEARSDGVQLILHHYNVLLYLCSSPSL 60
>gi|449531908|ref|XP_004172927.1| PREDICTED: proteinaceous RNase P 1,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 461
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/267 (44%), Positives = 163/267 (61%), Gaps = 6/267 (2%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
RGFEI+++M D+V NEA+ T++ R+A + D +MAF +VK+MK I PRLRSYG
Sbjct: 168 VLSRGFEIFQQMMTDKVSPNEATFTSLARIAAARDDPEMAFSLVKQMKDYHIAPRLRSYG 227
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
PAL FC +A V+ HML V PEE EL ALL++S + K D+VY LLH+LR +
Sbjct: 228 PALFGFCRKLMPKEAYEVDSHMLASAVEPEELELSALLKLSSDVKKADKVYELLHRLRRT 287
Query: 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
VR+VS TA VI WFNS+ A+ +GKK W+ +++ + +GGGWHG GWLG GKW +
Sbjct: 288 VRQVSEPTAKVIEDWFNSESASEVGKKHWDVDKVRECIVRRGGGWHGEGWLGSGKWKLVR 347
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
T + + +C C +KL ID+DP ETE FA S+ +A +R + + F FQ L +G
Sbjct: 348 TGIDDNGVCHSCAQKLVCIDIDPKETEDFASSLTKLANQRVK-ADFNNFQ--LAVFGGLI 404
Query: 607 AV---VDAANVGLYSQRNFKPARVNAV 630
DA L + KPA + A+
Sbjct: 405 GPGLDFDATTRYLSQAKGSKPAEILAL 431
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 176 TDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235
K KK+ K+ E L+ LDMCSK G V+ A+ LYD+A+ GI+L Q+HYNVLLYL
Sbjct: 91 VSHKLRKKALKEAPESV-LKYNLDMCSKYGQVVKALELYDEARSNGIQLNQHHYNVLLYL 149
Query: 236 CSSAAVGVVKPAKSGSGMRTLDTFEV 261
CSS ++ A + S + FE+
Sbjct: 150 CSSPSLLETSGANNLSSVVLSRGFEI 175
>gi|297739451|emb|CBI29633.3| unnamed protein product [Vitis vinifera]
Length = 267
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 104/206 (50%), Positives = 140/206 (67%), Gaps = 7/206 (3%)
Query: 582 IAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQK 637
+A++RE S+F++FQ WLD + +EA+VD AN+GLY Q F +++AVV + +
Sbjct: 1 MAMEREVRSNFREFQDWLDKHADYEAIVDGANIGLYQQNFANGEFSIPQLDAVVKELYDR 60
Query: 638 FPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFK 697
KK PL++LHN+R + NR L+++W LY TP GSNDDWYWLYAA+K K
Sbjct: 61 -SQKKRPLVILHNKRFRKLS-ENASNRKLLQEWLTQGVLYTTPNGSNDDWYWLYAAVKLK 118
Query: 698 CLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNW 757
CLLVTNDEMRDH F+LLG+ FF +WKERHQVR++F + MPP S+ IQES KG W
Sbjct: 119 CLLVTNDEMRDHIFELLGSSFFLKWKERHQVRYTFVKGNVKLLMPPSYSLFIQESVKGTW 178
Query: 758 HIPIASKQDYDDEERRWLCVTRANSH 783
H+P+AS+ D+ R W C+TR +SH
Sbjct: 179 HVPVASESS-DESLRTWHCITRPSSH 203
>gi|147769934|emb|CAN70051.1| hypothetical protein VITISV_034435 [Vitis vinifera]
Length = 753
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/260 (43%), Positives = 162/260 (62%), Gaps = 15/260 (5%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
+K A GF I++ + V NEA++TAV +A + DGD+AF++V+ M + ++PRL
Sbjct: 503 SKALALDYGFRIFDHVVNSGVTPNEATITAVASLATAKSDGDLAFEVVRTMVNYELSPRL 562
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
R+YGPAL FC N + +KA +P ++VS E G+GD+VY LHK
Sbjct: 563 RTYGPALFWFCTNLEGEKAWRSRS-------WPA-------VKVSAEMGRGDKVYAYLHK 608
Query: 483 LRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKW 542
LRT+VR VS STA++I WF + + +G I++ GGGWHG GW+GKGKW
Sbjct: 609 LRTAVRSVSESTAEIIEGWFCGEATSEVGGADCCLGAIEEVALKNGGGWHGQGWIGKGKW 668
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYY 602
+V V C C E+LA +D+D ETE F+ESVA++A++RE S+F++FQ WLD +
Sbjct: 669 VVCRAKVDSSGQCGSCREQLATVDIDRAETETFSESVAAMAMEREVRSNFREFQDWLDKH 728
Query: 603 GPFEAVVDAANVGLYSQRNF 622
+EA+VD AN+GLY Q+NF
Sbjct: 729 ADYEAIVDGANIGLY-QQNF 747
>gi|110741376|dbj|BAF02238.1| hypothetical protein [Arabidopsis thaliana]
Length = 440
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 109/267 (40%), Positives = 161/267 (60%), Gaps = 12/267 (4%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRS 424
A RGF+I+++M + NE+S+TAV R+A + GDG AF +VK + ++G PRLR+
Sbjct: 148 AIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGGYAFKLVKDLVAVGGVSVPRLRT 207
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC+ + +K VE+HM G+ EE E+ ALL+VS G+ ++VY L KLR
Sbjct: 208 YAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLR 267
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE--SLIKDTMENKGGGWHGLGWLGKGKW 542
V VS T+ I +WF +A+ + L++ + GGGWHGLGW+G+GKW
Sbjct: 268 ECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKW 327
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
IV V C C E LA +D + +ETE F S+ ++A++R E + F +F
Sbjct: 328 IVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEPMADFSEF 387
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQRNF 622
Q+WL+ +G +EA++D AN+GLY Q+NF
Sbjct: 388 QEWLEKHGDYEAILDGANIGLY-QQNF 413
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 194 LRVELDMCSKRGDVMGAIRLYDKA-QREGIKLGQYHYNVLLYLCSS 238
L + L CSKR D+ A+ LYD A I+L Q H+ LLYLCS+
Sbjct: 92 LLINLHSCSKRKDLSAALALYDAAITSSDIRLNQQHFQSLLYLCSA 137
>gi|301120109|ref|XP_002907782.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262106294|gb|EEY64346.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 505
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/408 (31%), Positives = 207/408 (50%), Gaps = 45/408 (11%)
Query: 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEE 446
E +A+ ++ D D ++ M+ ++P+LR++ P L + G++DK V E
Sbjct: 126 EPMYSAMIKLCSKAQDFDTCEIIITEMEVAKVDPKLRTFSPLLQALSDAGNLDKCIGVHE 185
Query: 447 HMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKE 506
+L H + E + ALLR SV+AG G+R Y L + + S ST DV+ +WFNS E
Sbjct: 186 KLLSHELELTEDDYVALLRASVKAGSGERFYAFLDSFIDEIWQPSLSTWDVLKEWFNS-E 244
Query: 507 AARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIID 566
AAR+ + W ++ +V + +C G++L ++
Sbjct: 245 AARMNGRTWK---------------------------ITEGSVSREGVCFVTGDQLQSVE 277
Query: 567 LDPIETEKFAESVASIAIKRE-RNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPA 625
L T + + ++ E R + + +F++WL+ +GP++ V+DAANVG Y +NF+
Sbjct: 278 LSAKSTAELLAKIENLVRTDEKRMTQWDEFKQWLEEFGPYDVVIDAANVG-YCNQNFEGG 336
Query: 626 RVN-AVVNGIRQKFPSK-KWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGS 683
N A + + Q + ++ K L+VLH RR + ++ +RA I +W+ + ++ G+
Sbjct: 337 GFNYAQIELMVQHYEAQDKKVLVVLHERRTSDEEVPAE-HRAQIAEWQASHKMFNCQYGN 395
Query: 684 NDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYM 741
NDDWYWLYAA+K + LL++NDEMRDH FQ++ N F RWKERHQV + +
Sbjct: 396 NDDWYWLYAAVKLGGRTLLISNDEMRDHHFQMIHNRAFRRWKERHQVHYQVYGSRVTVDE 455
Query: 742 PPPCSVVIQESEKGNWHIPIASKQDYDD---------EERRWLCVTRA 780
P P S Q NWH P A D +R+WLCV A
Sbjct: 456 PLPYSARPQRV-GDNWHFPAADTAADDSTTETAPAQVADRKWLCVELA 502
Score = 46.2 bits (108), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 173 RGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYN 230
R +T + ++ K+ +E ++Q R+++ C++ D A+ +Y++ +REG+ + Y Y+
Sbjct: 24 RKLTKTQRRRERKQTPAEKLEYQYRIQVQKCAQENDATRALEVYEQMKREGVNVAPYIYS 83
Query: 231 VLLYLCSSA 239
V++ +CS A
Sbjct: 84 VVINVCSKA 92
>gi|147855560|emb|CAN79167.1| hypothetical protein VITISV_031236 [Vitis vinifera]
Length = 696
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/232 (44%), Positives = 148/232 (63%), Gaps = 24/232 (10%)
Query: 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420
E+ A +RGFEI+++M +D + NEA+ T+ R+A +M D +MAF++VK+MKS GI P
Sbjct: 466 ENVVNLALKRGFEIFKQMGVDGIEPNEATFTSATRLACAMEDPEMAFNLVKQMKSCGIPP 525
Query: 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480
+LRSYGP L FC GD D+A V+ HM+E GV EEPEL ALL +SVE+ D+V+ ++
Sbjct: 526 KLRSYGPPLFRFCKKGDADRAYEVDAHMVESGVVAEEPELCALLGLSVESRWVDQVHEMM 585
Query: 481 HKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKG 540
H LR SVR+VS STA+V+ +WFNS++AAR+G++ W+ + T ++ G
Sbjct: 586 HHLRASVRQVSESTAEVVERWFNSEDAARVGEENWDVGKVVGTEMDEAG----------- 634
Query: 541 KWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSF 592
+C+ CGEKL ID+DP ETE FA S+ +A +RE + F
Sbjct: 635 -------------VCQSCGEKLVGIDIDPRETENFASSLTKLACQREVKADF 673
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 179 KGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238
K KK++++ E LR + DMCSK GDV+ A+ LYD+A+ G+ L Q++YNVLLYLCS
Sbjct: 401 KTRKKARRESPEGV-LRFKTDMCSKHGDVVEALHLYDEARSRGVPLSQHNYNVLLYLCSC 459
Query: 239 AA 240
+
Sbjct: 460 SG 461
>gi|348689807|gb|EGZ29621.1| hypothetical protein PHYSODRAFT_252680 [Phytophthora sojae]
Length = 512
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 124/397 (31%), Positives = 205/397 (51%), Gaps = 53/397 (13%)
Query: 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEE 446
E +A+ ++ D + ++ M+ + P+LR++GP L + G +DK V +
Sbjct: 131 EPIYSAMVKICSKAQDFEACETLIAEMEEAKVEPKLRTFGPLLQAHSDAGHLDKCIWVHD 190
Query: 447 HMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKE 506
L++ + P E + ALLR V+AG R Y L + V + S +T DV+ +WF+S E
Sbjct: 191 KFLKNELEPTEADYVALLRACVKAGDAQRFYAFLDRFIDDVWQPSLTTWDVLKEWFSS-E 249
Query: 507 AARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIID 566
AA++ +KW ++ TV + +C G++L ++
Sbjct: 250 AAQVDGRKWK---------------------------ITEGTVSKEGVCSVTGDQLQSLE 282
Query: 567 LDP-IETEKFAESVASI---------AIKR------ERNSSFQKFQKWLDYYGPFEAVVD 610
L P + +E A+ +A + AI++ +R + + +F++WL+ +GPF+ V+D
Sbjct: 283 LSPELTSELLAKVIAVVVYVNAGEWAAIEKLVRTDEKRKAQWDEFKQWLEEFGPFDVVID 342
Query: 611 AANVGLYSQRNFKPARVN-AVVNGIRQKFPSK-KWPLIVLHNRRITGHKMDQPVNRALIE 668
AANVG Y +NF+ N + + Q + ++ K L+VLH RR + ++ P +RA +
Sbjct: 343 AANVG-YCNQNFEGGGFNYKQIELMVQHYEAQGKKVLVVLHERRTSDEQVP-PEHRAQLA 400
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLLGNDFFPRWKERH 726
+W+ ++ G+NDDWYWLYAA+K + L+V+NDEMRDH FQ++ N F RWKERH
Sbjct: 401 QWRADHKMFNCQQGNNDDWYWLYAAVKLGGRTLMVSNDEMRDHHFQMIHNRAFGRWKERH 460
Query: 727 QVRFSFSDAGPEFYMPPPCSVVIQESEKGN-WHIPIA 762
QV + + P P S Q G+ WH P A
Sbjct: 461 QVHYQVHGSRATVDEPLPYSARPQRV--GDVWHFPSA 495
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 31/47 (65%)
Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237
++Q R+++ C+ D A+++Y++ + EG+ + Y YNV++ +CS
Sbjct: 41 EYQYRIQVQNCAHDNDAARALQVYEQMKSEGVNVAPYIYNVVINVCS 87
>gi|145341737|ref|XP_001415960.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576183|gb|ABO94252.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 374
Score = 196 bits (497), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 131/405 (32%), Positives = 196/405 (48%), Gaps = 43/405 (10%)
Query: 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV 444
M+E S TA+ R+ + GD + A D + +K + P++R+Y AL GD++K +V
Sbjct: 1 MSEMSYTALARVRAAAGDVEGALDAARALKEEKLTPKVRTYACALHASAKKGDLEKMEAV 60
Query: 445 EEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNS 504
E + + G+ P E E A+LR A D + +L ++RT +R S ++ + WF+
Sbjct: 61 EAMLRDEGLLPTELEFMAMLRAYRAAEAFDGGFAMLRRMRTEIRSPSDEMSEELRAWFS- 119
Query: 505 KEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAI 564
A G +E + D G +++ K +L
Sbjct: 120 ---AVPGWSVADEVRVDDA--------------GAAVAVLAMEE-------KRVELQLKA 155
Query: 565 IDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGP-FEAVVDAANVGLYSQRNFK 623
I L E +A +A +RE S F F WL+ A+VD ANVG+Y+Q NF
Sbjct: 156 ISLTEEERADLLAGIAKLACEREAQSEFDNFMNWLNVKKDGMNAIVDGANVGMYNQ-NFS 214
Query: 624 PA-----RVNAVVNGIRQKFPSKKWPLIV-LHNRRITGHKMDQPVNRALIEKWKNADALY 677
+ +V V+ +R++ P I LH RR+ G +P N+AL+ KW A L+
Sbjct: 215 TSGMNFNQVEKVLVELRKRAKEGDAPPIAFLHQRRVEGGPARKPHNQALLAKWDGAGELF 274
Query: 678 ATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLLGN-DFFPRWKERHQVRFSFSD 734
T GSNDDWYWLYAA+ K LVTNDE RDH FQ+L + F RWKERHQVRF+ +
Sbjct: 275 TTAHGSNDDWYWLYAAVHAGDKAFLVTNDECRDHVFQMLPSPKLFYRWKERHQVRFTITA 334
Query: 735 AGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTR 779
E P + +QE++ +W + + E+ WLC +
Sbjct: 335 GEVELDYPAVFTTCMQEADDSSWWM-------FPQEDESWLCACK 372
>gi|2894568|emb|CAA17157.1| putative protein [Arabidopsis thaliana]
gi|7269035|emb|CAB79145.1| putative protein [Arabidopsis thaliana]
Length = 1094
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/270 (38%), Positives = 154/270 (57%), Gaps = 28/270 (10%)
Query: 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPR 421
+ A RGF+I+++M + NE+S+TAV R+A + GDGD AF +VK + ++G PR
Sbjct: 561 QTVAIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPR 620
Query: 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481
LR+Y PAL FC+ + +K VE+HM G+ EE E+ ALL+
Sbjct: 621 LRTYAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLK---------------- 664
Query: 482 KLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE--SLIKDTMENKGGGWHGLGWLGK 539
KLR V VS T+ I +WF +A+ + L++ + GGGWHGLGW+G+
Sbjct: 665 KLRECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGE 724
Query: 540 GKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSF 592
GKWIV V C C E LA +D + +ETE F S+ ++A++R E + F
Sbjct: 725 GKWIVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEPMADF 784
Query: 593 QKFQKWLDYYGPFEAVVDAANVGLYSQRNF 622
+FQ+WL+ +G +EA++D AN+GLY Q+NF
Sbjct: 785 SEFQEWLEKHGDYEAILDGANIGLY-QQNF 813
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 194 LRVELDMCSKRGDVMGAIRLYDKA-QREGIKLGQYHYNVLLYLCSS 238
L + L CSKR D+ A+ LYD A I+L Q H+ LLYLCS+
Sbjct: 508 LLINLHSCSKRKDLSAALALYDAAITSSDIRLNQQHFQSLLYLCSA 553
>gi|308799561|ref|XP_003074561.1| unnamed protein product [Ostreococcus tauri]
gi|116000732|emb|CAL50412.1| unnamed protein product [Ostreococcus tauri]
Length = 506
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 137/426 (32%), Positives = 193/426 (45%), Gaps = 54/426 (12%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
+ EI M + MNE S TA+ R+ + GD D A + K + P++R+Y AL
Sbjct: 118 KAVEITSYMEKHGIAMNEMSYTALARVRAASGDVDGALEAAALCKEKKLTPKVRTYACAL 177
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489
GD+ K V+ M HG+ P E E +L+ A + D + +L K+RT +R
Sbjct: 178 HACARGGDLRKMERVDAIMRGHGLLPTELEFMEMLKAYRIAEEFDAGFDMLRKMRTEIRC 237
Query: 490 VSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTV 549
S + + WF + GW + VS
Sbjct: 238 PSDEMCEELRVWFGAAP----------------------------GWCVADE--VSVDEA 267
Query: 550 GGDALCKCCGEKLAIIDLDPI-----ETEKFAESVASIAIKRERNSSFQKFQKWLD-YYG 603
G EK I L I E E +A +A +RE S F+ F WL
Sbjct: 268 GTAVAVLVMDEKRIQIQLKAISLTEDERENLLSGIAKLACEREAISEFENFMNWLKGKKD 327
Query: 604 PFEAVVDAANVGLYSQRNFKPA-----RVNAVVNGIRQKF-PSKKWPLIVLHNRRITGHK 657
AVVD ANVG+Y+Q NF + +V V+ +RQ P++ LH RR+
Sbjct: 328 GMNAVVDGANVGMYNQ-NFSTSGMNFNQVEKVLEKLRQNAREGDAPPMVFLHQRRVENGP 386
Query: 658 MDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLL- 714
+P N+ + KW +A L+ T GSNDDWYWLYAA+ K +LVTNDE RDH FQ+L
Sbjct: 387 ARKPQNQERLAKWDSAGELFTTAHGSNDDWYWLYAAVHAGDKAVLVTNDECRDHVFQMLP 446
Query: 715 -GNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERR 773
F RWKERHQVRFSF+ + P + +QE++ G+W + + E+
Sbjct: 447 APQGLFYRWKERHQVRFSFTTGEVDLEYPALFTTCMQEADDGSWWM-------FPQEDDG 499
Query: 774 WLCVTR 779
WLC +
Sbjct: 500 WLCACK 505
>gi|449526245|ref|XP_004170124.1| PREDICTED: proteinaceous RNase P 1,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 327
Score = 183 bits (464), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/142 (60%), Positives = 102/142 (71%)
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITG 655
Q WL+ +GPF+AV+D ANVGL ++R F ++ V +R+ PSKK PLI+LH RRIT
Sbjct: 186 QGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMPLIILHKRRITD 245
Query: 656 HKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLG 715
P N LIE WKN ALYATP NDDWYWLYAA++FKCLL+TNDEMRDH FQLLG
Sbjct: 246 GPARNPNNMKLIETWKNCGALYATPYSVNDDWYWLYAAVRFKCLLLTNDEMRDHLFQLLG 305
Query: 716 NDFFPRWKERHQVRFSFSDAGP 737
N FFP+WKE+HQV S S P
Sbjct: 306 NTFFPQWKEKHQVFSSLSLLFP 327
>gi|302832000|ref|XP_002947565.1| hypothetical protein VOLCADRAFT_120484 [Volvox carteri f.
nagariensis]
gi|300267429|gb|EFJ51613.1| hypothetical protein VOLCADRAFT_120484 [Volvox carteri f.
nagariensis]
Length = 396
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 115/409 (28%), Positives = 198/409 (48%), Gaps = 41/409 (10%)
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
++ + A+ R +G+ A + + G +LR + PA +C +GDV + ++
Sbjct: 9 DQGTYLALARREALLGNPQAALQLTQECIQDGKLAQLRMFHPAQVGYCLSGDVAQLHHID 68
Query: 446 EHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFN-- 503
+ H + E E LL AG +++ +L ++++ + ++SP TA I +F
Sbjct: 69 SIIASHRLDNTEYEFARLLEGIAAAGTYEQMKAVLVRMQSDMNQMSPETAGHITSFFEKN 128
Query: 504 -----SKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKW-IVSHTTVGGDALCKC 557
+ A G + I D + GG W +W +V + V D C+
Sbjct: 129 AAAQQAFAPADQGGCRGLVRHITDAGGDSGGEW---------RWRVVQNAEVAEDGRCEA 179
Query: 558 CGEKLAIIDLDPIETEKFAESVASIAIKR--ERNSSFQKFQKWLDYYGPFEAVVDAANVG 615
G + +IDL+ E + FA+++A +A K R F + +W + GP++ +VDAANV
Sbjct: 180 AGGTVKVIDLEDEEWDAFAKAIAELARKNMGSRAGDFDAYTQWYERNGPYDIMVDAANVA 239
Query: 616 LYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWK 671
+ Q F +V + +RQ+FP+KK L+++H +R++ + P + IE+ +
Sbjct: 240 FFGQNREGGGFNWRQVQHMYEMLRQRFPNKK-ILVMVHRKRVSDAESRAPGVQEFIERLR 298
Query: 672 NADALYATPTGSNDDWYWLYAAIKFK--CLLVTNDEMRDHTFQLLGNDFFPRWKERHQVR 729
A + Y TP G+NDDW+W+YA+++ K LL++NDE+RDH F LL F +WKERH
Sbjct: 299 RARSFYHTPPGANDDWFWMYASVRAKHNGLLISNDELRDHIFSLLRPRHFLKWKERHIAH 358
Query: 730 FSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVT 778
+ S P + + Q E G W +P+ + W CV
Sbjct: 359 YRLSSNNPGY-------LSTQLEESGAWVLPV--------NDGTWRCVV 392
>gi|307108020|gb|EFN56261.1| hypothetical protein CHLNCDRAFT_145111 [Chlorella variabilis]
Length = 579
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 176/375 (46%), Gaps = 64/375 (17%)
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468
+ M + G+ P+LRS+ PAL + G+ KA V+ + H + EPE L++ +
Sbjct: 237 LPPEMVAAGVAPKLRSFTPALIAYAEAGECAKAFEVDAAIAAHQLDLGEPEFGRLVQAAA 296
Query: 469 EAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKG 528
+L ++ + + P++ +A F S AAR E
Sbjct: 297 AGASWAAALGVLRRIGAELTTLQPASLARVAALFASPTAAR-------------AFEGVP 343
Query: 529 GGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRER 588
GG G+W V V G C CG +LA +DL E +FA+ +A+IA ++ER
Sbjct: 344 GG---------GRWEVGPAAVDGAGRCSRCGGRLAALDLSGEELRQFAQGIAAIAERQER 394
Query: 589 NSS-FQKFQKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKW 643
+ F++F+ WL+ +GPF AVVD ANV LY Q F ++ AV + + + P K
Sbjct: 395 RPNDFKQFKCWLEEHGPFGAVVDGANVALYGQNFDSGGFNFGQIRAVCDHLASRHPDLK- 453
Query: 644 PLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLV 701
PL++L+ R + P +AL+ + A + Y TP GSNDDWYW+YAA+ + LLV
Sbjct: 454 PLLLLNVGRTKAAQARAPAAQALMRELGEAKSFYVTPAGSNDDWYWIYAAVTAGERGLLV 513
Query: 702 TNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPI 761
+NDEMRDH FQL D+ P P + QE E G+W P
Sbjct: 514 SNDEMRDHIFQL---DY-----------------------PAPYTTCAQELECGSWVFPG 547
Query: 762 ASKQDYDDEERRWLC 776
A + WLC
Sbjct: 548 A--------DGSWLC 554
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238
Q R + M +K D+ A+ ++D+A+ EG+KLG Y LLYLCS
Sbjct: 52 QARAAIHMAAKANDLPAALAVFDRAKAEGVKLGTELYVSLLYLCSG 97
>gi|325183720|emb|CCA18179.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 481
Score = 173 bits (438), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 121/416 (29%), Positives = 211/416 (50%), Gaps = 53/416 (12%)
Query: 372 FEIYEKM--CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
F+++E+M ++ ++E +LTA+ R+ + D + +M++ I P+LR++ L
Sbjct: 102 FKLFEEMESITNQKLIDENTLTAMIRICVQSKQLDRCALLFDKMRNYDIKPKLRTFSSLL 161
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY--LLHKLRTSV 487
S + G ++KA ++ + ++G+ E E ALL + + DRV + +L + ++
Sbjct: 162 SAYAAAGTLEKALEMKSMIEQNGIKMTESEYIALLDGC--SAESDRVLFRTMLDEFAQNI 219
Query: 488 RKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHT 547
S ST D I W+ ++ A + +KW+ +I
Sbjct: 220 MVPSRSTWDNIKHWY-TRGAICVDGEKWDCQVI--------------------------- 251
Query: 548 TVGGDALCKCCGEKLAIIDLDPIETEKFAESV-ASIAIKRERNSSFQKFQKWLDYYGPFE 606
V + C +L IDL E ++ + + A I ++ E+ + +++F++W D +GP++
Sbjct: 252 NVDANGCCPLTKNRLKSIDLTLEEKQELLDKIEALIGMEEEKLAQWKEFKEWHDQHGPYD 311
Query: 607 AVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPV 662
+VDAANV Y+Q F ++ V++ QK K L+VLH R ++ ++ +
Sbjct: 312 VIVDAANVAYYNQNFEGGGFNYRQITRVIDRY-QKLGKK--VLVVLHKRHMSEGRIPEAY 368
Query: 663 NRALIEKWKNADALYATPTGSNDDWYWLYAAI--KFKCLLVTNDEMRDHTFQLLGNDFFP 720
R+++ W ++ +Y G+NDDWYWLYAA+ + LV+NDEMRDH FQ++ N+ F
Sbjct: 369 -RSILTDWISSQTMYNCLPGNNDDWYWLYAAVQGRIGAYLVSNDEMRDHHFQMIQNETFG 427
Query: 721 RWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLC 776
WKERH VRFS ++ P P S +Q S W+ P + DD E WLC
Sbjct: 428 LWKERHLVRFSVNEHQLRVEEPSPYSKRMQ-SLDNVWYFP-----NTDDSE--WLC 475
>gi|147858758|emb|CAN83101.1| hypothetical protein VITISV_007460 [Vitis vinifera]
Length = 435
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/252 (43%), Positives = 148/252 (58%), Gaps = 29/252 (11%)
Query: 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTF 307
K G+G R+LD S+ ++ S D+ G +S + + DDLD +F
Sbjct: 165 KGGTGSRSLDMLSPSSEAHGKV--SEDLAEFGDTSKKNSEAFEVAK-------DDLDGSF 215
Query: 308 NEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYA 367
E + L N K NSQLL+G+ +L +G DD + K+ DN EI +SED KKYA
Sbjct: 216 TEMDKLSLVFNCFNKSNSQLLEGQKHLTKGVDDSTNIKE---DN----EIWVSEDFKKYA 268
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
+ GF+ EVPMNEA+LT++ RMAMSMG+GDMAFDMVK+ K LGINPRLRSYG
Sbjct: 269 LRSGFQ--------EVPMNEATLTSLVRMAMSMGNGDMAFDMVKQTKPLGINPRLRSYGS 320
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
L FCNNGD++KA VEE MLEHGVY E+P + + + +E + D Y L + +S+
Sbjct: 321 ELFTFCNNGDIEKAFGVEERMLEHGVYLEKP---SFIPILLEQEQPDEQMYSLAAMPSSL 377
Query: 488 --RKVSPSTADV 497
+K P+ +
Sbjct: 378 TAQKFLPNAVPI 389
>gi|4581132|gb|AAD24622.1| hypothetical protein [Arabidopsis thaliana]
Length = 369
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 114/299 (38%), Positives = 162/299 (54%), Gaps = 35/299 (11%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRS 424
A RGFEI+++M + NEAS+T+V R+A + G+GD AF +VK S+G PRLR+
Sbjct: 89 AIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAFKVVKEFVSVGGVSIPRLRT 148
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC + +K VEEHM G+ EE E+ ALL KLR
Sbjct: 149 YAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALL-----------------KLR 191
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE--SLIKDTMENKGGGWHGLGWLGKGKW 542
V VS T +I +WF ++A +G ++++ + N GGGWHG GW+G+GKW
Sbjct: 192 EYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREAVLNNGGGWHGHGWVGEGKW 251
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
V V C C E+LA +D + +ET+KF +S+ ++A+ R E N F +F
Sbjct: 252 TVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKMNSCETNVVFSEF 311
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPS-KKWPLIVLHNRRI 653
Q WL+ +G +EA+VD AN+GLY Q+NF + + Q PS + LH RI
Sbjct: 312 QDWLEKHGDYEAIVDGANIGLY-QQNFVDGSFS-----LSQVLPSFLGYLFFFLHIFRI 364
Score = 46.2 bits (108), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 182 KKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCSSAA 240
KK K R+ + L L+ CSK D+ A+ LYD A ++L Q H+ LLYLCS++
Sbjct: 21 KKKKVSRNPETNLLFNLNSCSKSKDLSAALALYDAAITSSEVRLSQQHFQTLLYLCSASI 80
Query: 241 VGV 243
+
Sbjct: 81 TDI 83
>gi|412992232|emb|CCO19945.1| predicted protein [Bathycoccus prasinos]
Length = 557
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 121/429 (28%), Positives = 200/429 (46%), Gaps = 71/429 (16%)
Query: 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLG----------------INPRLRSYGPALS 430
E S TA+ R+ G+ + +F+MV K+ G + P+LR+Y P+L
Sbjct: 120 EMSYTAMARVYARNGEFEKSFEMVDLCKNGGALGKGKDGGGKKTQQKLTPKLRTYAPSLR 179
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG--DRVYYLLHKLRTSVR 488
FC +G+ +A V E + G+ E E A++ V K + + +L K+++ VR
Sbjct: 180 GFCESGNWKRAEDVFEAIEREGLECTEMEFTAMMSVYGREKKTCEENGFRMLRKMKSKVR 239
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
+ + ++F ++ A W +++ +E+ G + + S T
Sbjct: 240 TCGKELIESVERFFKAEPNA------WRCETVEN-VESSSGRFE----------VSSENT 282
Query: 549 VGGDALCKCCGEK---------------LAIIDLDPIETEKFAESVASIAIKRERNSSFQ 593
+ G + L + L+ +E+++ SV +A +RE ++F
Sbjct: 283 IIGSSSDNNNNNNNNNNSNNSEKKQTFNLKRVGLNEVESKELIASVGKLAREREAGANFD 342
Query: 594 KFQKWLDYY-GPFEAVVDAANVGLYSQRNFKPAR-----VNAVVNGIRQKF--------- 638
F WL+ + +VD ANVG+ +Q NF +R ++ VV R+++
Sbjct: 343 DFCNWLEAREAKVQCIVDGANVGMANQ-NFAGSRFHFGQLDNVVEECRRRYCVCSTSDAS 401
Query: 639 -PSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF- 696
SK+ P++ LH RR H ++ K + ++ TP GSNDDWYWLYAA+
Sbjct: 402 DASKQRPVVFLHQRRTKDHAAKHQFGEKILNKLRQNKEIFVTPHGSNDDWYWLYAALVAG 461
Query: 697 -KCLLVTNDEMRDHTFQLLGN-DFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEK 754
+L++NDEMRDH FQ+L + + RWKERHQVRFS + E Y P + IQE+E+
Sbjct: 462 EDAVLISNDEMRDHVFQMLPDPNLLRRWKERHQVRFSVTKGEVELYEPAVFTTCIQENEE 521
Query: 755 GN-WHIPIA 762
W IP
Sbjct: 522 EEYWMIPFV 530
>gi|219110673|ref|XP_002177088.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411623|gb|EEC51551.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 637
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 136/426 (31%), Positives = 198/426 (46%), Gaps = 65/426 (15%)
Query: 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM---AMSMGDGDMAFDMVKRMKSLG 417
+D +K+AF+ I E M +P+ E + TA+ ++ + +G ++ D + ++
Sbjct: 152 DDRRKFAFR----IKEHMDGLGLPLIETAYTALIKLLSKSRQLGKAEVLLDEAEGVQQ-- 205
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV---EAGKGD 474
P+LR + P LS +C G + A V + + HG+ E E AL+R +V +A D
Sbjct: 206 CRPKLRMFAPLLSAYCETGSMIPALRVWQRLHRHGLVLSEKEYVALIRCAVITKDACVMD 265
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKK--KWNESLIKDTMEN----KG 528
RV L L V S T I WF S A K+ ++S I+ +E+ +
Sbjct: 266 RV---LSDLAEDVLVPSRETCLAIRAWFESPAAIATNKEGNHIDDSGIRIVLESIAYPQS 322
Query: 529 GGWHGLGWL--GKGKWIVSHT-TVGGD--ALCKCC--GEKLAIIDLDP---IETEKFAES 578
G +G + K W VS + +V D AL C G L + + E E+
Sbjct: 323 GQTLSMGPVLTQKSGWTVSESCSVDTDTGALQSGCLNGHSLKPLTVSSDTWQEMRNMNET 382
Query: 579 VASIAIKRERNSSFQ-----------------------KFQKWLDYYGP---FEAVVDAA 612
+ + E S FQ FQK+L + V+D A
Sbjct: 383 IVTSGKLEEHRSQFQGGRKGKRQKMDDRLLQERQNHWTHFQKYLIRRCTQRKIDLVIDGA 442
Query: 613 NVGLYSQRNFK--PARVNA-VVNGIRQKFPSK-KWPLIVLHNRRITGHKMDQPVNRALIE 668
N+G Y Q NF P V+ +N I Q F + K L+V+HNR T M + R LI+
Sbjct: 443 NIGYYEQ-NFAGAPKHVDYDQINWIVQHFLKQDKSVLLVMHNRHFTSQMMPRSF-RPLIQ 500
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKFK--CLLVTNDEMRDHTFQLLGNDFFPRWKERH 726
W + D LY TP G NDDW+W++AA+ L+VTNDEMRDH FQ+L F RWK+RH
Sbjct: 501 SWLDNDVLYRTPPGMNDDWFWMHAALYAGPGTLVVTNDEMRDHHFQMLARRSFLRWKDRH 560
Query: 727 QVRFSF 732
QVRFS
Sbjct: 561 QVRFSL 566
>gi|159471043|ref|XP_001693666.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283169|gb|EDP08920.1| predicted protein [Chlamydomonas reinhardtii]
Length = 523
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 111/196 (56%), Gaps = 12/196 (6%)
Query: 555 CKCCGEKLAIIDLDPIETEKFAESVASIAIKR--ERNSSFQKFQKWLDYYGPFEAVVDAA 612
C G L +IDL E E FA ++AS+A R + F F W D +GP++ +VDAA
Sbjct: 210 CDAAGGSLRVIDLAETEWESFANAIASLARTNMGARAAEFDAFAAWYDRHGPYDILVDAA 269
Query: 613 NVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
NV Y Q F ++ A+ + ++FPSKK L+++H R+ + + +A +
Sbjct: 270 NVAYYGQNREGGGFTWGQIQAMYELLTRRFPSKK-VLVMVHRNRLKDPEANTSAVQAFLG 328
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKFK--CLLVTNDEMRDHTFQLLGNDFFPRWKERH 726
+ ++ A TP G+NDDW+WLYA +K K LLV+ND +RDH F LL F +WK+RH
Sbjct: 329 RLRSCKAFNYTPPGANDDWFWLYACVKAKRRGLLVSNDLLRDHIFSLLRPKHFLKWKQRH 388
Query: 727 QVRFSF---SDAGPEF 739
R+++ + A PE+
Sbjct: 389 IARYTYVHWAQADPEW 404
>gi|255083625|ref|XP_002508387.1| predicted protein [Micromonas sp. RCC299]
gi|226523664|gb|ACO69645.1| predicted protein [Micromonas sp. RCC299]
Length = 585
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 81/145 (55%), Gaps = 11/145 (7%)
Query: 639 PSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF-- 696
P P+ LH RR+ G + P +AL++ WK L+ P GSNDDWYWLYAA+
Sbjct: 447 PGVDVPVNFLHVRRVRGGPANHPRAKALLDGWKRCGELFVCPAGSNDDWYWLYAAVASGD 506
Query: 697 KCLLVTNDEMRDHTFQLL-GNDFFPRWKERHQVRFSFSDA-GPEFYMPPPCSVVIQESEK 754
LV+NDEMRDH FQ+L F +WKERHQVRF S A G EFY PPP + +QE
Sbjct: 507 DAFLVSNDEMRDHAFQMLPAPRLFAKWKERHQVRFHMSAATGLEFYHPPPYTACVQEGSD 566
Query: 755 GNWHIPIASKQDYDDEERRWLCVTR 779
+W + + ++ W C R
Sbjct: 567 LDWWL-------FPGDDGEWTCAVR 584
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 115/262 (43%), Gaps = 33/262 (12%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+R I+ KM +V E + TA+ R+ + G+ A D+VKR+ + P+LR++ PA
Sbjct: 114 ERANAIFNKMVELDVQRTEMTYTALARIEAASGEPRRALDVVKRLIDERLTPKLRTFAPA 173
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L FC GD++ A E + G+ E E LL +A + + LL ++R VR
Sbjct: 174 LHAFCMKGDIEGALEAEAEIANAGIEISEAEYAVLLNAYADAERWEDGLALLRRMREEVR 233
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
+S + ++F+ GW + V T
Sbjct: 234 TLSTPLVESTRRFFDRHP----------------------------GWRLEASAEVDEAT 265
Query: 549 VGGDALCKCCGEK--LAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
G A G+K LA I+L + + +A +RE SSF F +WL GP
Sbjct: 266 --GAASSTPSGKKMQLAAINLSASDRAALLAGIGKLAREREAKSSFDGFVRWLAKRGPLP 323
Query: 607 AVVDAANVGLYSQRNFKPARVN 628
+VD ANVG+Y+Q NF +R N
Sbjct: 324 YLVDGANVGMYNQ-NFHESRFN 344
>gi|323456990|gb|EGB12856.1| hypothetical protein AURANDRAFT_60968 [Aureococcus anophagefferens]
Length = 636
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 121/441 (27%), Positives = 185/441 (41%), Gaps = 80/441 (18%)
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
++ K AF FE+++ M + + EA+ T + R+ A ++ +MK+ +
Sbjct: 183 TDSGAKRAF--AFELFDDMRAAGMELGEATFTMLVRVCAVDDAPAEAEGVLAKMKARNLK 240
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
+LR++ P L + C G++ +A +V + G+ E E AL V AG+
Sbjct: 241 LKLRTFSPLLKLRCRRGELAEALAVAAECRDKGIELSEAEHVAL--VDCRAGR------- 291
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL----G 535
L S A V+ + L D W
Sbjct: 292 ---LEAGGDAASLPGASVL------------------DDLAADCHAPSRAAWPACRRYCA 330
Query: 536 WLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIE----TEKFAESVASIAIKRERNSS 591
LG + V GD C G KL +DL E E+ V ++ K E SS
Sbjct: 331 ALGLTA-CAEESAVSGDGACAVTGAKLRSLDLSEAERALLLEQIEGLVPAVDAKFEGQSS 389
Query: 592 FQK--------------FQKWLDYYG-PFEAVVDAANVGLYSQRNFKPA-------RVNA 629
Q+ F+ WL G P++ ++D ANVG Y N+ A +V+A
Sbjct: 390 AQELERLAGRRMAQWRTFKAWLAKAGAPYDCIIDGANVG-YHGANYAGAPDAVDFRQVDA 448
Query: 630 VVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYW 689
V +R+ + L+VLH R + ++ R ++ W+ + +LY+ +NDDWYW
Sbjct: 449 V---LRKCIDGGRRALVVLHARHLQDDRLPASA-RPVLHAWRRSKSLYSCALRNNDDWYW 504
Query: 690 LYAAIKFK--CLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFS----DAGPEFYM-- 741
LYAA+ LLV+NDEMRDH F +L F WKERH +F D G + +
Sbjct: 505 LYAAVAAGPGSLLVSNDEMRDHHFGMLSARAFLVWKERHLAKFELGGWRRDGGRDVTIHD 564
Query: 742 PPPCSVVIQESEKGN----WH 758
PPP SV Q ++ G WH
Sbjct: 565 PPPFSVRAQRNDPGEALARWH 585
>gi|71410506|ref|XP_807544.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70871569|gb|EAN85693.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 560
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 110/452 (24%), Positives = 184/452 (40%), Gaps = 96/452 (21%)
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
+E+ L + R+ ++GD A M M S + RLRS L+ +C GD A +V
Sbjct: 103 DESVLAVILRLQCAVGDVPAATQMFSFMVSKKLL-RLRSVSVFLAFWCGRGDRRMAFAVY 161
Query: 446 EHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTSVRKVSPS-TADVIAKWFN 503
E L G+ E L R+ V G+ ++++L +++ V V + DVI W
Sbjct: 162 EEALRQGIELRAAEYVELGRLCVAVGEPVSTLHFMLREMQEHVLTVPEAMVTDVICPWTQ 221
Query: 504 SKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLA 563
+ R+ + ++ D G C CG L
Sbjct: 222 AA-GIRMAEVQFPHD---DATREPGT-------------------------CSFCGCVLR 252
Query: 564 IIDLDPIETEKFAESVASIAIKRERNS------SFQKFQKWLDYYGP-FEAVVDAANVGL 616
+ E+ V ++ + R + +F+ +++++ +G + ++D AN+G
Sbjct: 253 GHRFTAAQKERLLSDVMNVVMMAPRGNPTRVKVAFEAWRRFISTHGQRIDVLIDGANLGY 312
Query: 617 Y--------SQRNFKPAR-------------------VNAVVN------GIRQKFPSKKW 643
Y ++R AR V+ VN +++
Sbjct: 313 YGLSSWYEEAKRALLLARGKRAEGIKPKDVKWTKHGPVDVTVNFHLIDLAVQEAQRRGMR 372
Query: 644 PLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFK------ 697
PLI+LH R M + + ++ KW+ LY TP+G NDD WLYAA++
Sbjct: 373 PLILLHERHCEPKNMTEE-KKVIVAKWRREGILYCTPSGLNDDLCWLYAALELTTPTDTT 431
Query: 698 ---------CLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGP----EFYMPPP 744
++TND MRDH F+LL FF RW++RH++ F S + MP
Sbjct: 432 AAGSLVEKTVWVLTNDLMRDHHFKLLSPRFFARWRDRHRIAFKCSREDGRTLLHWVMPES 491
Query: 745 CSVVIQESEKGNWHIPIASKQD----YDDEER 772
+ IQE + WHIP+ ++D ++EER
Sbjct: 492 YAQCIQELKPLTWHIPVTPQEDTKSCAEEEER 523
>gi|303287330|ref|XP_003062954.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455590|gb|EEH52893.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 726
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 89/173 (51%), Gaps = 25/173 (14%)
Query: 624 PARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGS 683
PARV+A + + P P+ LH RR+ G + ++ ++++WK A L+ TP GS
Sbjct: 559 PARVDADLAALLATRPGSAVPVNFLHVRRVKGGPANHHRSKQIVDRWKRAGELFTTPAGS 618
Query: 684 NDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLLGND-FFPRWKERHQV------------ 728
NDDWYWLYAA+ LV+NDEMRDH FQ+L + F RWKERHQ
Sbjct: 619 NDDWYWLYAAVASGDDAFLVSNDEMRDHVFQMLPSPKLFARWKERHQARSYSHRFPYDRC 678
Query: 729 RFSFSDA-GPEFYMPPPCSVVIQES-EKGNWHIPIASKQDYDDEERRWLCVTR 779
RF S A G E Y PP S QE ++ W P+ ++ W C R
Sbjct: 679 RFHMSSATGLEVYYPPAFSAQTQEGKDRAWWAFPL--------DDGTWTCAVR 723
Score = 47.8 bits (112), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPRLRSYGPA 428
R +++ M ++P E S TA+ R+ + GD + AF++ ++S + P+LR++ PA
Sbjct: 208 RAQAVFDHMAKKDIPRTEMSYTALARVRAACGDAEGAFELANTVESEPRLAPKLRTFAPA 267
Query: 429 LSVFCNNGDV 438
L F G+V
Sbjct: 268 LHAFAIAGEV 277
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 561 KLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQR 620
+L ++L + + +A +RE +F F WL GP +VD ANVG+Y+Q
Sbjct: 413 QLVAMNLSAEDRASLLAGIGKLAREREAGGNFDGFVGWLRRRGPLPFLVDGANVGMYNQ- 471
Query: 621 NFKPARVN 628
NF +R N
Sbjct: 472 NFSESRFN 479
>gi|261334222|emb|CBH17216.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 571
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 116/448 (25%), Positives = 182/448 (40%), Gaps = 95/448 (21%)
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
+E+ L + R+ + GD A M M S + RLRS LS +C D A +V
Sbjct: 106 DESVLAVILRLQCAAGDAAGATKMFSYMVSHQLL-RLRSVSVFLSFWCKRRDRRMAFAVY 164
Query: 446 EHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTSVRKVSPSTAD-VIAKWFN 503
E L + + A+ R+ V G+ ++ LL +++ VS + A+ VI W
Sbjct: 165 EEALRQRMDLSMEDYLAIGRLCVNIGEPLATLHCLLREMQGHADGVSAAVAEEVIRPW-- 222
Query: 504 SKEAARLGKKKWNESLIK-DTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKL 562
A R G + + + D M G C C L
Sbjct: 223 ---ALRGGMEVTDVTFPHSDAMLPAGT-------------------------CCSCSRVL 254
Query: 563 AIIDLDPIETEKFAESVASIAIKRERNSS------FQKFQKWLDYYG-PFEAVVDAANVG 615
+ ++ K V IA+ R +S F+ +++++ +G + +VD AN+G
Sbjct: 255 SGHRFTALQKRKLLSDVVQIAMDGGRKNSPRARMAFETWRRFISSHGHSIDVLVDGANLG 314
Query: 616 LY-------------------------------SQRNFKPARVN--AVVNGIRQKFPSKK 642
Y S+R F VN + +++ +
Sbjct: 315 YYGLSSWYALAKRELLLRRGRKESDIGPQDVAWSKRRFVDVSVNFELIELAVQEAYRRGM 374
Query: 643 WPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF------ 696
PL++LH R + + V +AL+ +W+ LY TP+G NDD WLYAA++
Sbjct: 375 QPLVLLHERHCEPNNVTD-VGKALVSRWRREGVLYCTPSGLNDDLCWLYAALELTTPTDA 433
Query: 697 --------KCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGP----EFYMPPP 744
L++TND MRDH F+LL F RW++RH++ F S + MP P
Sbjct: 434 VPREEKGKTVLVLTNDLMRDHHFRLLSPRHFSRWRDRHRIAFKCSRVDDRTLLHWEMPAP 493
Query: 745 CSVVIQESEKGNWHIPIASKQ--DYDDE 770
+ IQE WHIPI++ Q DDE
Sbjct: 494 YAQCIQELSPLTWHIPISTNQCGGEDDE 521
>gi|71754937|ref|XP_828383.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70833769|gb|EAN79271.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 571
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 116/448 (25%), Positives = 182/448 (40%), Gaps = 95/448 (21%)
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
+E+ L + R+ + GD A M M S + RLRS LS +C D A +V
Sbjct: 106 DESVLAVILRLQCAAGDAAGATKMFSYMVSHQLL-RLRSVSVFLSFWCKRRDRRMAFAVY 164
Query: 446 EHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTSVRKVSPSTAD-VIAKWFN 503
E L + + A+ R+ V G+ ++ LL +++ VS + A+ VI W
Sbjct: 165 EEALRQRMDLSMEDYLAIGRLCVNIGEPLATLHCLLREMQGHADGVSAAVAEEVIRPW-- 222
Query: 504 SKEAARLGKKKWNESLIK-DTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKL 562
A R G + + + D M G C C L
Sbjct: 223 ---ALRGGMEVTDVTFPHSDAMLPAGT-------------------------CCSCSSVL 254
Query: 563 AIIDLDPIETEKFAESVASIAIKRERNSS------FQKFQKWLDYYG-PFEAVVDAANVG 615
+ ++ K V IA+ R +S F+ +++++ +G + +VD AN+G
Sbjct: 255 SGHRFTALQKSKLLSDVVQIAMDGGRKNSPRARMAFETWRRFISSHGHSIDVLVDGANLG 314
Query: 616 LY-------------------------------SQRNFKPARVN--AVVNGIRQKFPSKK 642
Y S+R F VN + +++ +
Sbjct: 315 YYGLSSWYALAKRELLLRRGRKESDIAPQDVAWSKRRFVDVSVNFELIELAVQEAYRRGM 374
Query: 643 WPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF------ 696
PL++LH R + + V +AL+ +W+ LY TP+G NDD WLYAA++
Sbjct: 375 QPLVLLHERHCEPNNVTD-VGKALVSRWRREGVLYCTPSGLNDDLCWLYAALELTTPTDA 433
Query: 697 --------KCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGP----EFYMPPP 744
L++TND MRDH F+LL F RW++RH++ F S + MP P
Sbjct: 434 VPREEKGKTVLVLTNDLMRDHHFRLLSPRHFSRWRDRHRIAFKCSRVDDRTLLHWEMPAP 493
Query: 745 CSVVIQESEKGNWHIPIASKQ--DYDDE 770
+ IQE WHIPI++ Q DDE
Sbjct: 494 YAQCIQELSPLTWHIPISTNQCGGEDDE 521
>gi|71664466|ref|XP_819213.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70884505|gb|EAN97362.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 560
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 107/442 (24%), Positives = 179/442 (40%), Gaps = 92/442 (20%)
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
+E+ L + R+ ++GD A M M S + RLRS L+ +C GD A +V
Sbjct: 103 DESVLAVILRLQCAVGDVPAATQMFSFMVSKKLL-RLRSVSVFLAFWCGRGDRCMAFAVY 161
Query: 446 EHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTSVRKVSPS-TADVIAKWFN 503
E L G+ E L R+ V + ++++L +++ V V + DVI W
Sbjct: 162 EEALRQGIELRAAEYVELGRLCVAVREPVSTLHFMLREMQEHVLTVPEAMVTDVICPWTQ 221
Query: 504 SKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLA 563
+ R+ + ++ DT G C CG L
Sbjct: 222 AA-GLRMAEVQFPHD---DTTREPGT-------------------------CSFCGCVLR 252
Query: 564 IIDLDPIETEKFAESVASIAIKRERNS------SFQKFQKWLDYYGPF-EAVVDAANVGL 616
+ E+ V ++ + R + +F+ +++++ +G + ++D AN+G
Sbjct: 253 GHRFTAAQKERLLSDVMNVVMMAPRGNPTRVKVAFEAWRRFISTHGQLIDVLIDGANLGY 312
Query: 617 Y--------SQRNFKPAR-------------------VNAVVN------GIRQKFPSKKW 643
Y ++R AR V+ VN +++
Sbjct: 313 YGLSSWYEEAKRALLLARGKRAEEIKPKDVTWMKHGAVDVTVNFHLIDLAVQEAQRRGMQ 372
Query: 644 PLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFK------ 697
PLI+LH R M + + ++ KW+ LY TP+G NDD WLYAA++
Sbjct: 373 PLILLHERHCEPKNMTEE-KKVIVAKWRREGILYCTPSGLNDDLCWLYAALELTTPTDAT 431
Query: 698 ---------CLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGP----EFYMPPP 744
++TND MRDH F+LL FF RW++RH++ F S + MP
Sbjct: 432 AAGSLVEKTVWVLTNDLMRDHHFKLLSPRFFARWRDRHRIAFKCSREDGRTLLHWVMPES 491
Query: 745 CSVVIQESEKGNWHIPIASKQD 766
+ IQE + WHIP+ ++D
Sbjct: 492 YAQCIQELKPLTWHIPVTPQED 513
>gi|407408493|gb|EKF31914.1| hypothetical protein MOQ_004244 [Trypanosoma cruzi marinkellei]
Length = 612
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 109/442 (24%), Positives = 178/442 (40%), Gaps = 92/442 (20%)
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
+E+ L + R+ ++GD A M M S + RLRS L+ +C GD A +V
Sbjct: 155 DESVLAVILRLQCAVGDVPAATQMFSFMVSKKLL-RLRSVSVFLAFWCGRGDRRMAFAVY 213
Query: 446 EHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTSVRKVSPS-TADVIAKWFN 503
E L G+ + L R+ V G+ ++++L +++ V V + DVI W
Sbjct: 214 EEALRQGIELRAADYVELGRLCVAVGEPVSTLHFMLREMQEHVLTVPEAMVTDVIRPW-- 271
Query: 504 SKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLA 563
EAA G + D + G C C L
Sbjct: 272 -AEAA--GLRMAEVQFPHDDATREPGT------------------------CSFCEGVLK 304
Query: 564 IIDLDPIETEKFAESVASIAIKRERNS------SFQKFQKWLDYYGP-FEAVVDAANVGL 616
+ E+ V ++ + R + +F+ +++++ +G + ++D AN+G
Sbjct: 305 GHRFTAAQKERLLSDVMNVVMMAPRGNPTRVKVAFEAWRRFISTHGQRIDVLIDGANLGY 364
Query: 617 Y--------SQRNFKPAR-------------------VNAVVN------GIRQKFPSKKW 643
Y ++R AR V+ VN +++
Sbjct: 365 YGLSSWYEGAKRALLLARGKRAEEIKPKDVTWTKHGAVDVTVNFHLIDLAVQEAQRRGMQ 424
Query: 644 PLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFK------ 697
PLI+LH R M + R + KW+ +Y TP+G NDD WLYAA++
Sbjct: 425 PLILLHERHCESKNMTEE-KRPIFAKWRREGIIYCTPSGLNDDLCWLYAALELTTPTDTT 483
Query: 698 ---------CLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGP----EFYMPPP 744
++TND MRDH F+LL FF RW++RH++ F S + MP P
Sbjct: 484 TAGSPVEKTVWVLTNDLMRDHHFKLLSPRFFARWRDRHRISFKCSREDGRTLLHWVMPEP 543
Query: 745 CSVVIQESEKGNWHIPIASKQD 766
+ IQE + WHIP+ ++D
Sbjct: 544 YAQCIQELKPLTWHIPVTPQED 565
>gi|428168076|gb|EKX37025.1| hypothetical protein GUITHDRAFT_145271 [Guillardia theta CCMP2712]
Length = 574
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/441 (22%), Positives = 181/441 (41%), Gaps = 99/441 (22%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMV-KRMKSLGINPRLRSYGPALSV 431
E+ + M V EA T + R ++MG+ A +++ + MK+ P+ R++ P L
Sbjct: 68 ELMKVMKEQNVQPEEAFFTTLIRFHLAMGNPSSAREVLGEMMKAENTLPKRRTFLPVLEA 127
Query: 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS 491
C G+ ++A + M E G+ E E L+++ R+ +L ++R + +
Sbjct: 128 VCEGGNEEEAFKMLTLMRELGIVMGESEFIYLVKLCSFDYARHRMPEVLEEMRQVLYGIQ 187
Query: 492 PSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGG 551
A+ + WF G+ +
Sbjct: 188 QPLAEELRNWFEKTHNVSTGR------------------------------------ITE 211
Query: 552 DALCKCCGEKLAIIDLDPIETEKFAESVASIA---IKRERNSS----------------- 591
+C C +L I+D+ + + E + + + + NS
Sbjct: 212 FGMCSVCQARLGIVDVKEEQVARMCEDLEKMIQLDLDGKSNSHELALQDNVFRTGTPQGL 271
Query: 592 -----FQKFQKWLDYYGPFEAVVDAANVGLYSQR-------NFKPARVNAVVNGIRQKFP 639
F+ F+ WL+ GP++ +VD ANVG Y Q +++ V+ ++++
Sbjct: 272 RGGTHFKTFKAWLEKNGPWDVIVDGANVGYYGQSGNQRRDLQLNYHQIDRVIRSLQRRGH 331
Query: 640 SKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAI----K 695
S + L++LH + I + + P ++E+W + +Y TP+G NDDW+W+YA + K
Sbjct: 332 SVR-VLLILHAQHIKKARHN-PDALKMVERWLSEGIIYVTPSGMNDDWFWIYAGLWSTRK 389
Query: 696 FK-CLLVTNDEMRDHTFQLL------GNDF---------------FPRWKERHQVRFSFS 733
K L+++ND M+DH + L+ G + F +WKERH V + +S
Sbjct: 390 LKSTLILSNDGMQDHHYALVETSRKFGGEVNSKRMMADTISYHKEFLKWKERHWVTYEWS 449
Query: 734 DAGPE--FYMPPPCSVVIQES 752
+ F P P S IQ S
Sbjct: 450 RSVGRIVFNFPLPYSTCIQGS 470
>gi|407847726|gb|EKG03344.1| hypothetical protein TCSYLVIO_005615 [Trypanosoma cruzi]
Length = 614
Score = 112 bits (281), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 105/442 (23%), Positives = 178/442 (40%), Gaps = 92/442 (20%)
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
+E+ L + R+ ++GD A M + S + RLRS L+ +C GD A +V
Sbjct: 157 DESVLAVILRLQCAVGDVPAATQMFSFILSKKLL-RLRSVSVFLAFWCGRGDRRMAFAVY 215
Query: 446 EHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTSVRKVSPS-TADVIAKWFN 503
E L G+ E L R+ V G+ ++++L +++ V V + DVI W
Sbjct: 216 EEALRQGIELRAAEYVELGRLCVAVGEPVSTLHFMLREMQEHVLAVPEAMVTDVICPWTQ 275
Query: 504 SKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLA 563
+ R+ + ++ D G C CG L
Sbjct: 276 AA-GLRMAEVQFPHD---DATREPGT-------------------------CSFCGCVLR 306
Query: 564 IIDLDPIETEKFAESVASIAIKRERNS------SFQKFQKWLDYYGP-FEAVVDAANVGL 616
+ E+ V ++ + R + +F+ +++++ +G + ++D AN+G
Sbjct: 307 GHRFTAAQKERLLSDVMNVVMMAPRGNPARVKVAFEAWRRFISTHGQRIDVLIDGANLGY 366
Query: 617 Y--------SQRNFKPAR-------------------VNAVVN------GIRQKFPSKKW 643
Y ++R AR V+ VN +++
Sbjct: 367 YGLSSWYEEAKRALLLARGKRAEEIKPKDVTWTKHGPVDVTVNFHLIDLAVQEAQRRGMR 426
Query: 644 PLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFK------ 697
PLI+LH R M + + ++ W+ LY TP+G NDD WLYAA++
Sbjct: 427 PLILLHERHCEPKNMTEE-KKVIVATWRREGILYCTPSGLNDDLCWLYAALELTTPTDTT 485
Query: 698 ---------CLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGP----EFYMPPP 744
++TND MRDH F+LL FF RW++RH++ F S + MP
Sbjct: 486 AAGSLVEKTVWVLTNDLMRDHHFKLLSPRFFARWRDRHRIAFKCSREDGRTLLHWVMPES 545
Query: 745 CSVVIQESEKGNWHIPIASKQD 766
+ IQE + WHIP+ ++D
Sbjct: 546 YAQCIQELKPLTWHIPVTPQED 567
>gi|342185400|emb|CCC94883.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
Length = 582
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 116/488 (23%), Positives = 187/488 (38%), Gaps = 126/488 (25%)
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
+E+ L R+ + GD A + + S RLRS L + C D A +V
Sbjct: 126 DESVLAVALRLRCTAGDAKGAMQIFSYIVSHKF-LRLRSVSAFLHLCCTRRDRQMAFAVY 184
Query: 446 EHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTSVRKVSPSTAD-VIAKWFN 503
+ L G+ + AL R+ V+ G+ ++ LL +++ + VS + + VI W
Sbjct: 185 DEALRQGIELRVEDYHALGRLCVDVGEPISTLHRLLREMQGHMDSVSETMVEEVIRPW-- 242
Query: 504 SKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLA 563
A R G + ++ T N + TT+ C C L+
Sbjct: 243 ---ATRGGLR-----VVDVTFPN------------------NDTTLSAGMCCNC-SRNLS 275
Query: 564 IIDLDPIETEKFAESVASIAIKRERNSS------FQKFQKWLDYYGP-FEAVVDAANVGL 616
++ V +A R S F+ +++++ YG + ++D AN+G
Sbjct: 276 GHRFTAVQKSSLIGDVVKVATSSGRKDSARAWVAFEAWRRFVSAYGSRIDVLIDGANLGY 335
Query: 617 Y-------------------------------SQRNFKPARVNAVVNGIRQKFPSKKW-- 643
Y S+R F V+ + G+ ++
Sbjct: 336 YGLSSWYSIAKRELLMKRGRRAGEIQPQELELSKRGFVDVSVSFELIGLAVNEARRRGLR 395
Query: 644 PLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFK------ 697
PL++LH+R M + AL+ +W+ LY TP G NDD WLYAA++
Sbjct: 396 PLVILHSRHCEPKNMTAE-SEALVAEWRRDGVLYCTPNGLNDDLCWLYAALELTTPTDAA 454
Query: 698 --------CLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFS--DAGPEFY--MPPPC 745
++TND MRDH F+LL +F RW++RH++ F D + MP P
Sbjct: 455 AAAGAAKTVWVLTNDLMRDHHFKLLSPRYFVRWRDRHRIAFKCERKDGRTLLHWEMPAPY 514
Query: 746 SVVIQESEKGNWHIPI-----------------------ASKQDYDDEE----------- 771
+ IQE NWHIP+ A++QDY +
Sbjct: 515 ARCIQEPSHLNWHIPVGEPCCEAKGEGDVSRADTEAAGEATRQDYPPRQSCAWTAGGFQT 574
Query: 772 -RRWLCVT 778
+RWLCV
Sbjct: 575 PQRWLCVC 582
>gi|238012854|gb|ACR37462.1| unknown [Zea mays]
gi|414586240|tpg|DAA36811.1| TPA: hypothetical protein ZEAMMB73_657460 [Zea mays]
Length = 77
Score = 110 bits (274), Expect = 4e-21, Method: Composition-based stats.
Identities = 45/74 (60%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 706 MRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQ 765
MRDH FQLLG FFPRWKE+HQVR +FS GP ++PPP S+VIQESE G+WH+P +
Sbjct: 1 MRDHLFQLLGTSFFPRWKEKHQVRLTFSGHGPTLHLPPPYSIVIQESEDGSWHVPTTTGD 60
Query: 766 DYDDEERRWLCVTR 779
D ++ R+WLC TR
Sbjct: 61 DI-EKPRQWLCTTR 73
>gi|397615121|gb|EJK63235.1| hypothetical protein THAOC_16122 [Thalassiosira oceanica]
Length = 703
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 22/164 (13%)
Query: 588 RNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPA-------RVNAVVNGIRQKFPS 640
R ++Q+F+ +++ + P+ AVVD ANVG Y +NF + +++ ++ + ++ P
Sbjct: 469 RVDAWQRFETFIERHPPYGAVVDGANVG-YFDKNFHGSPKHVDYRQIDWLLRHMLEQEPH 527
Query: 641 KKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADA------LYATPTGSNDDWYWLYAAI 694
+ ++ LH R + K+ +I+ W + A +Y TP G NDDWYW++AA+
Sbjct: 528 RH-VIMFLHERHFSS-KLAPGWAFPIIDAWDSDRAPYSHLTVYRTPAGMNDDWYWMHAAL 585
Query: 695 ------KFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSF 732
+ L VTNDEMRDH FQ+L + F RWKERHQ+ F F
Sbjct: 586 INGGKADKQVLAVTNDEMRDHHFQMLAHGSFLRWKERHQIHFDF 629
>gi|340056237|emb|CCC50567.1| conserved hypothetical protein, fragment [Trypanosoma vivax Y486]
Length = 562
Score = 102 bits (254), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 123/277 (44%), Gaps = 60/277 (21%)
Query: 547 TTVGGD-ALCKCCGEKLAIIDLDP---------IETEKF------------AESVASIAI 584
TTV D +C CG L D P IET+ A V+S+ I
Sbjct: 254 TTVNKDKGMCDRCGTALYSFDFSPGDRETLLNDIETKLIEPRLGSPGSCESASKVSSVEI 313
Query: 585 KRERNSSFQKFQKWLDYYGPFEAVVDAANVGLY--------------SQRNFKPARV--N 628
+R R FQKF++ + ++AV+D ANVG Y S R P +V +
Sbjct: 314 ER-RVGEFQKFKELISIL-EYDAVIDGANVGYYGLSSWYRAAKEALLSSRGVDPTKVSEH 371
Query: 629 AVVNGIRQKFPSKKWPLI---VLHNRRITGHKMDQPVNR---ALIEKWKNADALYATPTG 682
+ K+PLI + H RR+ + R L+E +L P
Sbjct: 372 ELCEVPVPVDVPPKFPLIDEMLTHARRLRSKSLVMLHRRHRNLLLES-----SLVVCPGF 426
Query: 683 SNDDWYWLYAAI-KFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFS-----FSDAG 736
NDD+ WLYAAI K CL+V+ND+MRDH F LL F RW++RH+V ++ + A
Sbjct: 427 LNDDYCWLYAAIRKPNCLVVSNDQMRDHHFSLLSRRSFLRWRQRHRVTYAGRFNRMTGAV 486
Query: 737 PEFYMPP-PCSVVIQESEKG--NWHIPIASKQDYDDE 770
PP P ++ +Q +WHIP+ S D D+
Sbjct: 487 TLLLSPPRPYAIWVQRGRVSGTHWHIPVRSTCDIIDQ 523
>gi|300122576|emb|CBK23145.2| unnamed protein product [Blastocystis hominis]
Length = 264
Score = 102 bits (254), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 121/247 (48%), Gaps = 34/247 (13%)
Query: 555 CKCCGEKLAIIDLDPIETEKFAESVASIAIKR--------------ERNSSFQKFQKWLD 600
C CG+++ I L E + A + + +R ER +F++F+ +L+
Sbjct: 12 CTHCGKQMQRIILPTAEKLELASEIEQVIQQRSGFDRMKRSKEGDGERMENFRRFKAFLE 71
Query: 601 YYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGH 656
GPF+ +D AN+ Y Q F +++ + + ++Q+ LIVLH H
Sbjct: 72 ANGPFDIFIDGANIAHYKQNFEGGTFNYQQIDMIASYLQQQGYK---VLIVLHE-----H 123
Query: 657 KMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFK--CLLVTNDEMRDHTFQLL 714
DQP L E+W Y G+NDDWYW+YAA+ + ++++ND+MRDH FQ+
Sbjct: 124 HFDQPTT-DLPERWLEQKLAYKVVKGNNDDWYWMYAALSSRNDAMILSNDKMRDHFFQIH 182
Query: 715 GNDFFPRWKERHQVRFS-FSDAGPEFYM---PPPCSVVIQESEKGNWHIPIASKQDYDDE 770
+ F W+E Q+ + ++D + ++ P + IQE+ G +HIP ++ +
Sbjct: 183 NDLRFQAWREYSQIYYDIWTDIEKKKFVLTFPKKFTQSIQENLAG-FHIPFGKIEENVKQ 241
Query: 771 ERRWLCV 777
+ + C+
Sbjct: 242 VKHYFCL 248
>gi|224011972|ref|XP_002294639.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969659|gb|EED87999.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 845
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 100/204 (49%), Gaps = 33/204 (16%)
Query: 592 FQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPA-------RVNAVVNGIRQKFPSKKWP 644
++KF+ +++ + F+ V+D ANVG Y Q+NF A +++ ++ + + +
Sbjct: 618 WKKFEGFIERHPSFDVVIDGANVGYY-QQNFGNAPKHVDYKQIDGLLRHVLEGNSHEHHV 676
Query: 645 LIVLHNRRITGHKMDQPVNRALIEKWK------NADALYATPTGSNDDWYWLYAAI---- 694
++ LH R ++ +I W N +Y TP G +DDWYW++AA+
Sbjct: 677 ILFLHERHF-AERLVPSWAWPIIRDWDSDKSPYNRLTVYRTPVGMDDDWYWMHAALMNGG 735
Query: 695 ---KFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFS---------DAGPEFYMP 742
L ++NDEMRDH FQ+L + F RWKERHQVRF F D E+ P
Sbjct: 736 KKDAPPVLTISNDEMRDHHFQMLAHGSFLRWKERHQVRFDFGHWNNRIGRRDVLLEY--P 793
Query: 743 PPCSVVIQESEKGNWHIPIASKQD 766
S IQ + G IP+ K D
Sbjct: 794 SSYSRRIQRLDGGAIAIPLPKKGD 817
>gi|407408445|gb|EKF31883.1| hypothetical protein MOQ_004281 [Trypanosoma cruzi marinkellei]
Length = 571
Score = 99.0 bits (245), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 116/277 (41%), Gaps = 65/277 (23%)
Query: 555 CKCCGEKLAIID---------LDPIETEKFA-----------ESVASIAIKRERNSSFQK 594
C CG KL D L IET+ A E + + A K R F+
Sbjct: 263 CSRCGTKLKSFDFTSIDRATLLSDIETKLIAPRVGGENHYEPEKIVTPAEKDRRWREFEA 322
Query: 595 FQKWLDYYGPFEAVVDAANVGLYS--------------QRNFKPARV------------- 627
F++ L ++AV+D ANVG Y R PA V
Sbjct: 323 FKETLANCD-YDAVIDGANVGYYGLSSWYREAKEACLRARGVDPATVPEYQLCEVPLPVD 381
Query: 628 -----NAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTG 682
+ + + Q + PL++LH R + + + + KWK AL A P
Sbjct: 382 VPPKFSLIDEMLAQTRCIGRKPLVMLHKRHVESPSKE---SSEWLLKWKADSALIACPGF 438
Query: 683 SNDDWYWLYAAI-KFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRF------SFSDA 735
NDD+ WLYAAI K CL V+ND MRDH F LL F RW++RH+V + + +A
Sbjct: 439 MNDDYCWLYAAICKPNCLFVSNDLMRDHHFMLLSRRSFLRWRQRHRVTYKALFQRATGNA 498
Query: 736 GPEFYMPPPCSVVIQES--EKGNWHIPIASKQDYDDE 770
MP P SV +Q + +WH+P+ D D+
Sbjct: 499 TLLLAMPRPFSVWVQRGLLSRTHWHVPVLLSADIIDQ 535
>gi|261331446|emb|CBH14440.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 566
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 119/277 (42%), Gaps = 63/277 (22%)
Query: 554 LCKCCGEKLAIIDLDP---------IETEKFAESVAS--------IAIKRERNSSFQKFQ 596
+C C ++ D P IET+ A V S + ER +++F
Sbjct: 262 MCCRCSTRVHTFDFAPDDRVTLLRDIETKLIAPRVESGSHYEPGKVVEPTERKERWEEFA 321
Query: 597 KWLDYYG--PFEAVVDAANVGLYSQRNFK------------------------------- 623
+ D ++AV+D ANVG Y N+
Sbjct: 322 VFKDTLSRLDYDAVIDGANVGYYGLSNWYRGAKEALLRSRGVDPSTLPEYELCEIPLPVD 381
Query: 624 -PARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTG 682
P + + + + + +K +++LH+R + + N +EKW+ +L P
Sbjct: 382 VPPKFSLIDEMLTEAQKLRKKSVVMLHSRHVRSPSKE---NLVWLEKWRQESSLIVCPGF 438
Query: 683 SNDDWYWLYAAI-KFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQV----RFSFSDAGP 737
NDD+ WL+AAI + CL+V+ND+MRDH F LL F RW++RH V RFS++
Sbjct: 439 LNDDYCWLFAAIHRPNCLVVSNDQMRDHHFSLLSRRSFLRWRQRHLVTYRARFSWATGAV 498
Query: 738 EFY--MPPPCSVVIQESE--KGNWHIPIASKQDYDDE 770
+P P +V +Q + +WH+P+ + D D+
Sbjct: 499 SLLLSLPRPYAVWVQRGQLSPSHWHVPVRTTLDVIDQ 535
>gi|71745204|ref|XP_827232.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70831397|gb|EAN76902.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 566
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 118/278 (42%), Gaps = 65/278 (23%)
Query: 554 LCKCCGEKLAIIDLDP---------IETEKFAESVAS-----------IAIKRERNSSFQ 593
+C C ++ D P IET+ A V S + ++ER F
Sbjct: 262 MCCRCSTRVHTFDFAPDDRVTLLRDIETKLIAPRVESGSHYEPGKVVELTERKERWEEFA 321
Query: 594 KFQKWLDYYGPFEAVVDAANVGLYSQRNFK------------------------------ 623
F+ L ++AV+D ANVG Y N+
Sbjct: 322 VFKDTLSRLD-YDAVIDGANVGYYGLSNWYRGAKEALLRSRGVDPSTLPEYELCEIPLPV 380
Query: 624 --PARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPT 681
P + + + + + +K +++LH+R + + N +EKW +L P
Sbjct: 381 DVPPKFSLIDEMLTEAQKLRKKSVVMLHSRHVRSPSKE---NLVWLEKWGQESSLIVCPG 437
Query: 682 GSNDDWYWLYAAI-KFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQV----RFSFSDAG 736
NDD+ WL+AAI + CL+V+ND+MRDH F LL F RW++RH V RFS++
Sbjct: 438 FLNDDYCWLFAAIHRPNCLVVSNDQMRDHHFSLLSRRSFLRWRQRHLVTYRARFSWATGA 497
Query: 737 PEFY--MPPPCSVVIQESE--KGNWHIPIASKQDYDDE 770
+P P +V +Q + +WH+P+ + D D+
Sbjct: 498 VSLLLSLPRPYAVWVQRGQLSPSHWHVPVRTTLDVIDQ 535
>gi|71659584|ref|XP_821513.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70886895|gb|EAN99662.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 571
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 126/312 (40%), Gaps = 85/312 (27%)
Query: 555 CKCCGEKLAIID---------LDPIETEKFA-----------ESVASIAIKRERNSSFQK 594
C CG KL D L IET+ A E + + A K R F+
Sbjct: 263 CSRCGTKLFSFDFTSIDRATLLSDIETKLIAPRVGGENHYEPERIVTPAEKDRRWREFEA 322
Query: 595 FQKWLDYYGPFEAVVDAANVGLYSQRNFK------------------------------- 623
F++ L ++ V+D ANVG Y ++
Sbjct: 323 FKETLTNCD-YDVVIDGANVGYYGLSSWYREAKELCLRARGVDPTTVPEYQLCEVPLPVD 381
Query: 624 -PARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTG 682
P + + + + Q + PL++LH R + + + + KWK AL A P
Sbjct: 382 VPPKFSLIDEMLAQTRCVGRKPLVMLHKRHVESPSKE---SSEWLLKWKADSALIACPGF 438
Query: 683 SNDDWYWLYAAI-KFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRF------SFSDA 735
NDD+ WLYAAI K CL V+ND MRDH F LL F RW++RH+V + + A
Sbjct: 439 MNDDYCWLYAAICKPDCLFVSNDLMRDHHFMLLSRRSFLRWRQRHRVTYKALFQRATGTA 498
Query: 736 GPEFYMPPPCSVVIQES--EKGNWHIPI--------------ASKQ-----DYDDEERRW 774
MP P SV +Q + +WH+P+ + KQ D DD W
Sbjct: 499 TLLLAMPRPFSVWVQRGLLSRTHWHVPVLLSADIIDQATNRASGKQVEVDKDGDDSCDAW 558
Query: 775 LCVTRANSHMNR 786
LC T A + +NR
Sbjct: 559 LC-TAAKNLLNR 569
>gi|407847678|gb|EKG03306.1| hypothetical protein TCSYLVIO_005652 [Trypanosoma cruzi]
Length = 571
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 114/277 (41%), Gaps = 65/277 (23%)
Query: 555 CKCCGEKLAIID---------LDPIETEKFA-----------ESVASIAIKRERNSSFQK 594
C CG KL D L IET+ A E + + A K R F+
Sbjct: 263 CSRCGTKLFSFDFTSIDRATLLSDIETKLIAPRVGGENHYEPERIVTPAEKDRRWREFEA 322
Query: 595 FQKWLDYYGPFEAVVDAANVGLYSQRNFK------------------------------- 623
F++ L ++ V+D ANVG Y ++
Sbjct: 323 FKEALTNCD-YDVVIDGANVGYYGLSSWYREAKELCLRARGVDPTTVPEYQLCEVPLPVD 381
Query: 624 -PARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTG 682
P + + + + Q + PL++LH R + + + + KWK AL A P
Sbjct: 382 VPPKFSLIDEMLAQTRCVGRKPLVMLHKRHVESPSKE---SSEWLLKWKADSALIACPGF 438
Query: 683 SNDDWYWLYAAI-KFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRF------SFSDA 735
NDD+ WLYAAI K CL V+ND MRDH F LL F RW++RH+V + + A
Sbjct: 439 MNDDYCWLYAAICKPDCLFVSNDLMRDHHFMLLSRRSFLRWRQRHRVTYKALFQRATGTA 498
Query: 736 GPEFYMPPPCSVVIQES--EKGNWHIPIASKQDYDDE 770
MP P SV +Q + +WH+P+ D D+
Sbjct: 499 TLLLAMPRPFSVWVQRGLLSRTHWHVPVLLSADIIDQ 535
>gi|323450637|gb|EGB06517.1| hypothetical protein AURANDRAFT_71973 [Aureococcus anophagefferens]
Length = 939
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 110/398 (27%), Positives = 162/398 (40%), Gaps = 73/398 (18%)
Query: 381 DEVPMNEASLTAVGRMAMSMGDGDMAFDMVK-RMKSLGINPRLRSYGPALSVFCNNGDVD 439
+ V +NEAS TA+ R ++ G D A D+V R++ +P+LR+Y P ++ C V
Sbjct: 516 NRVGVNEASYTALARSHVAAGALDDALDVVATRLED--ASPKLRTYAPLVAALCAADRVR 573
Query: 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIA 499
A +V M GV P + ALL +G +R+ + + +A
Sbjct: 574 DARTVWAAMAAGGVAPTDELYVALLEALARSGDA-------AGCAACLRERAAADDAGLA 626
Query: 500 KWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCG 559
++ +A L SL T E TTV D C+ G
Sbjct: 627 AAHLTRVSAAL------RSLPDATCEA--------------------TTVDDDGTCRVSG 660
Query: 560 EKLAIIDLDPIETEKFAE---SVASIAIKRERNSSFQKFQKWL-DYYGPFEAVVDAANVG 615
L LD E +F E VA+ +R+R F WL D+ F AV+D NV
Sbjct: 661 RTLPTGGLDGRERAQFRERLLDVANATSERDRRE-LAAFGAWLEDHPYAFTAVLDGPNVA 719
Query: 616 LYSQR----NFKPARVNAVVNGIRQK-------FPSKKWPLIVLHN--RRITGHKMDQPV 662
+Q F+ ++ AV + P+K +V ++ RR D+P
Sbjct: 720 YLNQNFEHGKFRVRQLQAVAGHLEAAGHVVLVVLPAKYCEAVVPNHSKRRPRAAARDEPG 779
Query: 663 NRAL----------IEKWKNADALYATPTGSNDDWYWLYAAI-KFKCLLVTNDEMRDHTF 711
L I+ W ALY P G +DD YW+ A + + + L V+ND+ RDH
Sbjct: 780 GTPLQELEDSELAAIKAWAERGALYVVPRGCHDDLYWMLATVSRDQPLAVSNDKTRDHWP 839
Query: 712 QLLGNDFFPRWKERHQVRFSFS-----DAGPEFYMPPP 744
+L+G + RW R V F DAG E PPP
Sbjct: 840 KLIGEAQYRRWATRSVVNFGLGYAEPDDAGDE---PPP 874
>gi|432940085|ref|XP_004082710.1| PREDICTED: mitochondrial ribonuclease P protein 3-like [Oryzias
latipes]
Length = 616
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 96/399 (24%), Positives = 165/399 (41%), Gaps = 66/399 (16%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A +++ +K + P R+YG +S +GD + A ++ + +LE G+ P PE +L
Sbjct: 257 AMNLLDEIKKV-FTPSPRNYGDVISAAMLHGDTNTAWALYDELLEKGLSP-HPETWCVLF 314
Query: 466 VSVEAGKG--------DRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE 517
E +G R+ +L +R + + A+ I WF S L +KW
Sbjct: 315 TRAEMTEGAAHEAEHHQRLLGILLYMRNNQIYPNKMVANAIKTWFES-----LSSQKWT- 368
Query: 518 SLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAE 577
G W T+ LC CCG +L I L E ++ E
Sbjct: 369 -----------GSW---------------TSPRSKGLCGCCGSELESIQLTAEEYQELKE 402
Query: 578 SVASIAI------KRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVV 631
V + I K+ + F++++ PF+ VVD NV + N +++ +
Sbjct: 403 KVIADVIQGRDVFKKTTPEELEHFKEFVRRKPPFDVVVDGLNV---ANVNRDKTKLSHTL 459
Query: 632 NGIRQKFPSKKWPLIVLHNRRITGHKMD-QPVNRALIEKWKNADALYATPTGSNDDWYWL 690
+ + + ++VL + + + N +LI++ + + T S DD + L
Sbjct: 460 LAVVSELKHQGLTILVLGRKHMLRPSISWDRKNMSLIQQKAHC---FFTDNISEDDPFLL 516
Query: 691 YAAIK--FKCLLVTNDEMRDHTFQL---LGNDFFPRWKERHQVRF-SFSDAG--PEFYMP 742
YA + + C V+ D MRDH L F +W+ HQ+ F AG +F
Sbjct: 517 YATLHSGYHCRFVSRDLMRDHKACLPDGATRRLFFKWQRGHQLVLDGFVAAGNRVKFQSI 576
Query: 743 PPCSVVIQESEKGNWHIPIASKQDYDDEE--RRWLCVTR 779
P ++Q + +WHIP +D E +RWLC+T+
Sbjct: 577 PSYDTIVQTTS-DSWHIPYDDTEDRSTYEVPQRWLCLTK 614
>gi|428174047|gb|EKX42945.1| hypothetical protein GUITHDRAFT_110991 [Guillardia theta CCMP2712]
Length = 566
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 111/236 (47%), Gaps = 34/236 (14%)
Query: 562 LAIIDLDPIETEKFAESVASIA-IKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQR 620
LA+I E + + + S+A + ++++F F+ WL+ + ++D ANVG YS R
Sbjct: 345 LALISWFQDELSQLCDQINSLARVGDAQSAAFDAFKSWLNRSSLPDVIIDGANVGYYSLR 404
Query: 621 NFKPARVNAV-VNGIRQKFPSKKW-PLIVLHNRRITGHKM-DQP----VNRALIEKWKNA 673
+ +++ + V+ I Q F +K PL+V+H+R + D+P V + L++ A
Sbjct: 405 PDQGEKLSYMQVDKIVQWFKERKMKPLLVMHSRHFHKDALKDKPQEASVVQRLVQMLMGA 464
Query: 674 DALYATPTGSNDDWYWLYAAI-----KFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQV 728
A NDDW+WLYA K K +V+ND+MRDH FQ H V
Sbjct: 465 RMEEAMEEAMNDDWFWLYAGAWCSKQKGKVFIVSNDQMRDHHFQA---------SSLHWV 515
Query: 729 RFSFSD----AGPEFYMPPPCSVVIQ--ESEKGNWHIPIASKQDYDDEERRWLCVT 778
F F + + P P S +Q + ++ WH P A+KQ WLC
Sbjct: 516 NFHFDERHGASDPVLAFPSDYSYRMQPRQDDQAMWHFPSATKQS------DWLCCA 565
>gi|154345319|ref|XP_001568601.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065938|emb|CAM43720.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 581
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 124/317 (39%), Gaps = 89/317 (28%)
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKF----------- 595
+ V + +C CG +L DL P + + +K R F ++
Sbjct: 268 SPVSEEGVCSHCGAQLQSFDLSPEDRAALVHDLVEKLVK-PRLQGFSRYEPDTEVSEDII 326
Query: 596 -QKWLDY--------YGPFEAVVDAANVGLYS--------------QRNFKPARVNAVVN 632
Q+W ++ ++ V+D ANVG Y R P+ V +
Sbjct: 327 GQRWREFEEFKAAAETMSYDTVIDGANVGYYGLSSWYAEAKDSLLRSRGVDPSSVPSS-E 385
Query: 633 GIRQKFPSKKWP-------------------LIVLHNRRITGHKMDQPVNRALIEKWKNA 673
FP P +IVLHNR + P N ++W++
Sbjct: 386 RFNVPFPVDVAPKFSLIEDMRIAAERNGKKTVIVLHNRHLAQLT---PENATYAQRWRDM 442
Query: 674 DALYATPTGSNDDWYWLYAAI-KFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRF-S 731
AL +P NDD+ WLYA + + +++ND+MRDH F++L FF RW++RH++ + +
Sbjct: 443 SALLPSPPFLNDDYCWLYAVLTRQDSCIISNDQMRDHYFRVLQPRFFLRWRQRHRITYKA 502
Query: 732 FSD-----AGPEFYMPPPCSVVIQ---ESEKGNWHIPIASK------------------- 764
F + Y+P SV +Q + + +WH+P S
Sbjct: 503 FYNRTARATSLRIYLPRAYSVWVQACGAASQYHWHVPYISDIDVIHQATNQTISTNASID 562
Query: 765 --QDYDDEERRWLCVTR 779
+D DDE W+C R
Sbjct: 563 LGKDGDDECTDWICTWR 579
>gi|389595359|ref|XP_003722902.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|323364130|emb|CBZ13137.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 584
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 113/280 (40%), Gaps = 66/280 (23%)
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRE--------------RNSSFQK 594
V D +C CG +L DL P + +K ++ Q+
Sbjct: 273 VSDDGVCSNCGAQLQSFDLSPENRAVLVHDLVEKLVKPRLQGCSRYEPDTEVSEDTVCQR 332
Query: 595 FQKWLDYYGP-----FEAVVDAANVGLYS--------------QRNFKPARVNAVVNGIR 635
++++ ++ ++ V+D ANVG Y R P+ V + +
Sbjct: 333 WREFEEFKAAAAKMSYDTVIDGANVGYYGLNSWYTEAKDALLRSRGIDPSSVPSA-DRFS 391
Query: 636 QKFPSKKWP-------------------LIVLHNRRITGHKMDQPVNRALIEKWKNADAL 676
FP P +IVLHNR + P N +W+N AL
Sbjct: 392 VPFPVDVAPKFSLIEDMRTAAERRGKKAVIVLHNRHLA---QPTPENATYAARWRNMGAL 448
Query: 677 YATPTGSNDDWYWLYAAI-KFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRF----- 730
+P NDD+ WLYA + + +++ND+MRDH F +L FF RW++RH++ +
Sbjct: 449 LPSPAFLNDDYCWLYAVLTRQDSCIISNDQMRDHYFTVLQPRFFVRWRQRHRITYKALYN 508
Query: 731 -SFSDAGPEFYMPPPCSVVIQ---ESEKGNWHIPIASKQD 766
S A ++P SV +Q + + +WHIP + D
Sbjct: 509 KSARAATLRIHLPRAYSVWVQACGAASQRHWHIPYIASID 548
>gi|299116676|emb|CBN74821.1| multidrug resistance pump, putative [Ectocarpus siliculosus]
Length = 1071
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 102/228 (44%), Gaps = 52/228 (22%)
Query: 592 FQKFQKWLDYY----GPFEAVVDAANVGLY--SQRNFKPARVNAVVNGIRQKFPSKKWPL 645
Q F WL + AV+D+ANV + S +F +V+ +V + K + PL
Sbjct: 574 LQIFVDWLHAQRADGKTYTAVIDSANVAYHKGSAFHFSLPQVDLMVQALEAK---GERPL 630
Query: 646 IVLHNRRIT-------------GHK-MDQPVNRALIEKWKNADALYATPTGSNDDWYWLY 691
+++ + I G + M P+N+A++++W+ LY ++DDWYW+Y
Sbjct: 631 VLIAEKYIDRVGDLYDNSPARGGFRYMSNPLNKAIVKRWRAKSQLYECSDEASDDWYWMY 690
Query: 692 AAIKFKCL---LVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFS--------------- 733
A + F + +++ND RDH L + RW+ +F +
Sbjct: 691 ATVAFDDIPMTVISNDRTRDHRMSLAETVPYLRWRTTQLAQFELTYPLKDIMGKGLNPQG 750
Query: 734 --DAGPEFYMPPPCSVV--IQESEKGNWHIPIASKQDYDDEERRWLCV 777
P+ + PP + +Q+SE+G WH+P + DDE WLC+
Sbjct: 751 WPANPPQVAIQPPPAFTRDVQKSEQGCWHVPAGA----DDE---WLCI 791
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV 444
+ E + + R +S G+ AFD++K M + G+ PRLR Y P ++ C G +D A V
Sbjct: 309 IEENTYVPLIRGMVSHGNCHDAFDLIKDMVNQGVQPRLRCYEPVIAEMCREGGMDAAREV 368
Query: 445 EEHMLEHGVYPEE 457
EHM + GV P E
Sbjct: 369 WEHMEQQGVIPRE 381
>gi|242079533|ref|XP_002444535.1| hypothetical protein SORBIDRAFT_07g023405 [Sorghum bicolor]
gi|241940885|gb|EES14030.1| hypothetical protein SORBIDRAFT_07g023405 [Sorghum bicolor]
Length = 92
Score = 86.3 bits (212), Expect = 6e-14, Method: Composition-based stats.
Identities = 41/88 (46%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
Query: 598 WLDYYGPFEAVV---DAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRIT 654
WL +GPF+AV+ D ANV LY+ + F ++VN+VVN I++ SKK PLI+LH R+
Sbjct: 2 WLCCHGPFDAVIQLIDVANVDLYNSKAFSFSQVNSVVNAIQRVTKSKKLPLIILHRNRVN 61
Query: 655 GHKMDQPVNRALIEKWKNADALYATPTG 682
G P N+ ++E W+NA ALY T G
Sbjct: 62 GGPAKAPYNQKILESWRNAGALYTTAPG 89
>gi|401430040|ref|XP_003879502.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495752|emb|CBZ31058.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 584
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 126/318 (39%), Gaps = 87/318 (27%)
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIK-RERNSSFQK----------F 595
+V D +C CG L DL + + +K R + SS +
Sbjct: 271 ASVSDDGVCSNCGAPLQSFDLSAEDRAVLVHDLVEKLVKPRLQGSSRYEPDTEVSEDIVC 330
Query: 596 QKWLDYYG--------PFEAVVDAANVGLYS--------------QRNFKPARVNAVVNG 633
Q+W ++ ++ V+D ANVG Y R P+ V + +
Sbjct: 331 QRWREFEEFKAAAAKMSYDTVIDGANVGYYGLNSWYTEAKDALLRSRGIDPSSVPSA-DR 389
Query: 634 IRQKFP-------------------SKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNAD 674
FP S K +IVLHNR + + P N +W++ D
Sbjct: 390 FSVPFPVDVAPKFSLIEDMRTTAERSGKKAVIVLHNRHL---EHPTPENATFAARWRDMD 446
Query: 675 ALYATPTGSNDDWYWLYAAI-KFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFS-- 731
AL +P NDD+ WLYA + + +++ND+MRDH F +L FF RW++RH++ +
Sbjct: 447 ALLPSPAFLNDDYCWLYAVLMRQDSCIISNDQMRDHYFTVLQPRFFVRWRQRHRITYRAL 506
Query: 732 ----FSDAGPEFYMPPPCSVVIQ---ESEKGNWHIP-IAS-------------------- 763
A ++P SV +Q + + +WH+P IAS
Sbjct: 507 YNKIARVATLRIHLPRAYSVWVQACGAASQRHWHVPYIASIGVIHQATNQTIMTSADVDL 566
Query: 764 KQDYDDEERRWLCVTRAN 781
+D DD+ W+C R +
Sbjct: 567 GKDGDDQCTDWICTRRGS 584
>gi|428169526|gb|EKX38459.1| hypothetical protein GUITHDRAFT_115425 [Guillardia theta CCMP2712]
Length = 270
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 98/220 (44%), Gaps = 53/220 (24%)
Query: 591 SFQKFQKWL-DYYGPFEAVVDAANVGLYSQRNFKPA-----RVNAVVNGIRQK------- 637
S F W+ + F VVD NV YS++NF+ +++ VVN +R++
Sbjct: 13 SILNFLDWMRETSQQFSVVVDGPNVA-YSKQNFETGCFSYHQIDIVVNKLREEGEKVLVL 71
Query: 638 FPSKK-WPLIVLHNRR------------ITGHKMDQPVNRALIEKWKNADALYATPTGSN 684
P K P+I H R +TG +M+ +I++W L +P GSN
Sbjct: 72 LPYKYVQPIIPNHARHQGHLNFSTAQHVVTGDEME------IIDRWNAEGCLKISPHGSN 125
Query: 685 DDWYWLYAAIKFK---CLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAG-PE-- 738
DDWYW+ + + + +VTND+MRDH LL F RWK +RF FS A PE
Sbjct: 126 DDWYWMLSTVIDEGETVRVVTNDQMRDHRLALLDPRPFLRWKTTRIIRFDFSHAWEPEKI 185
Query: 739 -----------FYMPPPCSVVIQES---EKGNWHIPIASK 764
PP S IQ S E WH PI +K
Sbjct: 186 ANGTSDIPQVTLIQPPVISPEIQRSSDEEHMIWHFPIRTK 225
>gi|157875101|ref|XP_001685956.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68129029|emb|CAJ06509.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 694
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 65/131 (49%), Gaps = 24/131 (18%)
Query: 644 PLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF------- 696
PL++LH R + M N A++++WK+ LY +PTG NDD WLY A+
Sbjct: 428 PLVMLHERHVEPKFMTSQ-NTAIVQRWKDRGWLYCSPTGLNDDLCWLYGALLLTDPTDAT 486
Query: 697 ------------KCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGP----EFY 740
+ + TND+MRDH F+LL F RW++RH++ F S G +
Sbjct: 487 PTSVATASASPHRTFVCTNDKMRDHHFRLLSPRAFTRWRDRHRIAFRCSRVGDRTELHWE 546
Query: 741 MPPPCSVVIQE 751
+P P IQ+
Sbjct: 547 LPAPYERCIQQ 557
>gi|146102307|ref|XP_001469331.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134073700|emb|CAM72437.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 584
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 124/314 (39%), Gaps = 87/314 (27%)
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIK-RERNSSFQK----------FQK 597
V D +C CG +L DL + + +K R + SS + Q+
Sbjct: 273 VSDDGVCSNCGAQLQSFDLSAEDRAVLVHDLVEKLVKPRLQGSSRYEPDTEVSEETVCQR 332
Query: 598 WLDYYG--------PFEAVVDAANVGLYS--------------QRNFKPARVNAVVNGIR 635
W ++ ++ V+D ANVG Y R P+ V + +
Sbjct: 333 WREFEEFKAAAAKMSYDTVIDGANVGYYGLNSWYTEAKDALLRSRGIDPSSVPSA-DRFS 391
Query: 636 QKFP-------------------SKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADAL 676
FP S K +IVLHNR + H P N +W++ AL
Sbjct: 392 VPFPVDVAPKFSLIEDMRTAAERSGKKAVIVLHNRHL-AHP--TPENATYAARWRDMGAL 448
Query: 677 YATPTGSNDDWYWLYAAI-KFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFS---- 731
+P NDD+ WLYA + + +++ND+MRDH F +L FF RW++RH++ +
Sbjct: 449 LPSPAFLNDDYCWLYAVLTRQDSCIISNDQMRDHYFTVLQPRFFVRWRQRHRITYKALYN 508
Query: 732 --FSDAGPEFYMPPPCSVVIQE---SEKGNWHIP-IAS--------------------KQ 765
A ++P SV +Q + + +WH+P IAS +
Sbjct: 509 KIARVATLRIHLPRVYSVWVQACGVASQRHWHVPYIASIDVIHQATNQTIMTSADVDLGK 568
Query: 766 DYDDEERRWLCVTR 779
D DD+ W+C R
Sbjct: 569 DGDDQCTDWICTRR 582
>gi|15239331|ref|NP_200851.1| antiporter/ drug transporter [Arabidopsis thaliana]
gi|79331594|ref|NP_001032110.1| antiporter/ drug transporter [Arabidopsis thaliana]
gi|9757745|dbj|BAB08226.1| unnamed protein product [Arabidopsis thaliana]
gi|332009946|gb|AED97329.1| antiporter/ drug transporter [Arabidopsis thaliana]
gi|332009947|gb|AED97330.1| antiporter/ drug transporter [Arabidopsis thaliana]
Length = 156
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 57/90 (63%), Gaps = 8/90 (8%)
Query: 540 GKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSF 592
GKWIV V C C E+LA +D + +ET+KF +S+ ++A++R E + F
Sbjct: 22 GKWIVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMERKAKMNSCESDVVF 81
Query: 593 QKFQKWLDYYGPFEAVVDAANVGLYSQRNF 622
+FQ WL+ +G +EA+VD AN+GLY Q+NF
Sbjct: 82 SEFQDWLEKHGDYEAIVDGANIGLY-QQNF 110
>gi|507273|gb|AAA29271.1| ORFA [Leishmania infantum]
Length = 584
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 124/314 (39%), Gaps = 87/314 (27%)
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIK-RERNSSFQK----------FQK 597
V D +C CG +L DL + + +K R + SS + Q+
Sbjct: 273 VTDDGVCSNCGAQLQSFDLSAEDRAVLVHDLVEKLVKPRLQGSSRYEPDTEVSEDTVCQR 332
Query: 598 WLDYYG--------PFEAVVDAANVGLYS--------------QRNFKPARVNAVVNGIR 635
W ++ ++ V+D ANVG Y R P+ V + +
Sbjct: 333 WREFEEFKAAAAKMSYDTVIDGANVGYYGLNSWYTEAKDALLRSRGIDPSSVPSA-DRFS 391
Query: 636 QKFP-------------------SKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADAL 676
FP S K +IVLHNR + H P N +W++ AL
Sbjct: 392 VPFPVDVAPKFSLIEDMRTAAERSGKKAVIVLHNRHL-AHP--TPENATYAARWRDMGAL 448
Query: 677 YATPTGSNDDWYWLYAAI-KFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFS---- 731
+P NDD+ WLYA + + +++ND+MRDH F +L FF RW++RH++ +
Sbjct: 449 LPSPAFLNDDYCWLYAVLTRQDSCIISNDQMRDHYFTVLQPRFFVRWRQRHRITYKALYN 508
Query: 732 --FSDAGPEFYMPPPCSVVIQE---SEKGNWHIP-IAS--------------------KQ 765
A ++P SV +Q + + +WH+P IAS +
Sbjct: 509 KIARVATLRIHLPRVYSVWVQACGVASQRHWHVPYIASIDVIHQATNQTIMTSADVDLGK 568
Query: 766 DYDDEERRWLCVTR 779
D DD+ W+C R
Sbjct: 569 DGDDQCTDWICTRR 582
>gi|507272|gb|AAA29270.1| ORF13 [Leishmania infantum]
Length = 858
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 124/316 (39%), Gaps = 87/316 (27%)
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIK-RERNSSFQK----------FQK 597
V D +C CG +L DL + + +K R + SS + Q+
Sbjct: 547 VTDDGVCSNCGAQLQSFDLSAEDRAVLVHDLVEKLVKPRLQGSSRYEPDTEVSEDTVCQR 606
Query: 598 WLDY--------YGPFEAVVDAANVGLYS--------------QRNFKPARVNAVVNGIR 635
W ++ ++ V+D ANVG Y R P+ V + +
Sbjct: 607 WREFEEFKAAAAKMSYDTVIDGANVGYYGLNSWYTEAKDALLRSRGIDPSSVPSA-DRFS 665
Query: 636 QKFP-------------------SKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADAL 676
FP S K +IVLHNR + P N +W++ AL
Sbjct: 666 VPFPVDVAPKFSLIEDMRTAAERSGKKAVIVLHNRHLA---HPTPENATYAARWRDMGAL 722
Query: 677 YATPTGSNDDWYWLYAAIKFK-CLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFS---- 731
+P NDD+ WLYA + + +++ND+MRDH F +L FF RW++RH++ +
Sbjct: 723 LPSPAFLNDDYCWLYAVLTRQDSCIISNDQMRDHYFTVLQPRFFVRWRQRHRITYKALYN 782
Query: 732 --FSDAGPEFYMPPPCSVVIQE---SEKGNWHIP-IAS--------------------KQ 765
A ++P SV +Q + + +WH+P IAS +
Sbjct: 783 KIARVATLRIHLPRVYSVWVQACGVASQRHWHVPYIASIDVIHQATNQTIMTSADVDLGK 842
Query: 766 DYDDEERRWLCVTRAN 781
D DD+ W+C R +
Sbjct: 843 DGDDQCTDWICTRRGS 858
>gi|110738688|dbj|BAF01269.1| hypothetical protein [Arabidopsis thaliana]
Length = 135
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 57/90 (63%), Gaps = 8/90 (8%)
Query: 540 GKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSF 592
GKWIV V C C E+LA +D + +ET+KF +S+ ++A++R E + F
Sbjct: 22 GKWIVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMERKAKMNSCESDVVF 81
Query: 593 QKFQKWLDYYGPFEAVVDAANVGLYSQRNF 622
+FQ WL+ +G +EA+VD AN+GLY Q+NF
Sbjct: 82 SEFQDWLEKHGDYEAIVDGANIGLY-QQNF 110
>gi|342183454|emb|CCC92934.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 565
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 98/232 (42%), Gaps = 48/232 (20%)
Query: 566 DLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFK-- 623
D P + E+ E + K R F+ F++ L ++ V+D ANVG Y ++
Sbjct: 343 DCSPYDMEEAVEPME----KGHRWKEFEDFKEVLSLLD-YDGVIDGANVGYYGLSSWYSE 397
Query: 624 ------------------------------PARVNAVVNGIRQKFPSKKWPLIVLHNRRI 653
P + + V + +R+ +K +I+LH+R
Sbjct: 398 AKKKMLQASGADLSTVPEYDLCEVPFPVDVPPKFSLVDDMLREARRLRKNSVIMLHSRHF 457
Query: 654 TGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAI-KFKCLLVTNDEMRDHTFQ 712
K N I KWK AL P NDD+ WL+AA+ + CL+ +ND+MRDH F
Sbjct: 458 ---KSPPEENLPWIAKWKREKALVVCPGFLNDDYCWLFAAVYRPNCLVFSNDQMRDHHFT 514
Query: 713 LLGNDFFPRWKERHQVRF------SFSDAGPEFYMPPPCSVVIQESEKGNWH 758
L G F RW++RH VR+ A +P P ++ +Q + H
Sbjct: 515 LSGRSFL-RWRQRHLVRYVARFNPVIGTAALHLTLPRPYAIWVQRGKVSQSH 565
>gi|298707702|emb|CBJ26019.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 115
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 59/106 (55%), Gaps = 18/106 (16%)
Query: 683 SNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFY 740
+NDDWYWLYAA+ L++TNDEMRDH F +L + F RWKERHQ RF F D E
Sbjct: 9 NNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQARFYFGDWKGEGG 68
Query: 741 MPPPCSVVIQE-------SEKG--NWHIPIASKQDYDDEERRWLCV 777
V+ +E ++KG +WH+P+ +D WLC
Sbjct: 69 DDDAREVITEEPRSYSKRTQKGVDSWHVPLERSRD-------WLCA 107
>gi|292623047|ref|XP_683289.3| PREDICTED: mitochondrial ribonuclease P protein 3-like [Danio
rerio]
Length = 578
Score = 79.3 bits (194), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 92/390 (23%), Positives = 159/390 (40%), Gaps = 55/390 (14%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A M++ MK + P R+YG ++ +GD + + + + +LE G+ P + + L +
Sbjct: 227 AISMLQDMKK-ALLPSPRNYGDVIAGAVLHGDSETSWKLYDELLELGLVPGQDTWQCLFQ 285
Query: 466 VSV-EAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTM 524
+ + G D+++ +L +R + + I WF S L +KW
Sbjct: 286 SGITQRGHEDKLFDVLSYMRDNQIYPEKPLMETIKAWFES-----LPDQKW--------- 331
Query: 525 ENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI 584
+GK+ S T GD C+ C L I L +E + +V I
Sbjct: 332 --------------RGKF--SSVTPSGD--CRNCKALLESIQLTEVEYAQLKHNVMEKVI 373
Query: 585 K------RERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKF 638
+ + + F+ ++ PF+ V+D NV + + AVV+ + Q
Sbjct: 374 EGGDVFNKSNPEELKSFKSFVKQRPPFDIVIDGLNVAKMLPHAAQSETLLAVVSELEQ-- 431
Query: 639 PSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIK--F 696
+ ++VL + + H + +R + K + T S DD Y LYAA+
Sbjct: 432 --QSLNILVLGRKHMLRHSRNW--DRQNMSLIKQKAHCFFTEDISEDDPYLLYAALNSGV 487
Query: 697 KCLLVTNDEMRDHTFQLLGND---FFPRWKERHQVRFSFSDAGPEFYMPPPCSV-VIQES 752
C ++ D MRDH L + F +W+ HQ+ S G S I ++
Sbjct: 488 HCKFLSRDLMRDHKACLPDSATRCLFFKWQRGHQLVISHYTPGKRVRFERILSYDTIIQT 547
Query: 753 EKGNWHIPIASK-QDYDDEE--RRWLCVTR 779
+WHIP K +D E ++WLC+TR
Sbjct: 548 NGSSWHIPYDQKAEDRASYEVPQKWLCLTR 577
>gi|401427932|ref|XP_003878449.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494697|emb|CBZ30000.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 693
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 24/133 (18%)
Query: 644 PLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAI--------- 694
PL++LH R + M N A++++WK+ LY +PTG NDD WLY A+
Sbjct: 428 PLVMLHERHVEPKFMTLQ-NTAILQRWKDRGWLYCSPTGLNDDLCWLYGALLLTDPTDTT 486
Query: 695 ----------KFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGP----EFY 740
+ + TND+MRDH F+LL F RW++RH++ F S G +
Sbjct: 487 PTSVTATSASPHRTFVCTNDKMRDHHFRLLSPRAFTRWRDRHRIAFRCSRVGDRTELRWE 546
Query: 741 MPPPCSVVIQESE 753
+P P IQ+ +
Sbjct: 547 LPAPYERCIQQHD 559
>gi|219122328|ref|XP_002181499.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406775|gb|EEC46713.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 828
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 111/483 (22%), Positives = 184/483 (38%), Gaps = 111/483 (22%)
Query: 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443
P ++ LT V R+ ++ G A +++ G RLR+Y P L + G+
Sbjct: 359 PTEQSILTRV-RLLVAQGHAKAAENLLVE-HDCGF--RLRAYSPVLRLHMEQGNAKAVMH 414
Query: 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH--------KLRTSVRKVSPSTA 495
+ M + EA V + AG + Y+ L KL V P
Sbjct: 415 LYRRMKRLPLV----HFEAETYVHLIAGLAELGYFQLQSDPIDGIEKL-GFVNGAGPGLF 469
Query: 496 DVIAKWF--NSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWL-------GKGKWIVSH 546
D + + E K+ N +L K E+ LG + G+ +I S
Sbjct: 470 DELLTEMAEDILELTSQHAKRLNNALAKGFPESSLEVTSSLGSVLQTSVAAGEDDFIASR 529
Query: 547 TTVG-GDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------------KRERNSSF- 592
+ C G KL ++ L+P + + F +++ +A KR + S F
Sbjct: 530 VHIDQSSGHCPVSGVKLRLMSLEPEQAKAFKQNILDMATSEQDRYELKSKQKRAQRSDFI 589
Query: 593 -QKFQKWLDYYG--PFEAVVDAANVGLYSQRNFKPAR-----VNAVVNGIRQKFPSKKWP 644
+F KWLD PF A++D N+G Y Q NF+ R + VV+ + + P
Sbjct: 590 LNEFMKWLDTRAGDPFTAILDGPNIGYYMQ-NFEGGRFSYHQLKFVVDSLESM---NEKP 645
Query: 645 LIVL----HNRRI---------TGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLY 691
L++L N RI T K + + LI+ + +Y P G DD++W+
Sbjct: 646 LVILPRKYANDRIHLTIGGVMQTLKKEELQIRNYLIKTGR----VYLVPPGHLDDYFWML 701
Query: 692 AAIKFKC------------------------LLVTNDEMRDHTFQLLGNDFFPRWKERHQ 727
+++ + +L++ND+MRDH LL F RW
Sbjct: 702 SSLSTQTTARNGRDLSVLPGDPGGRWPGARPMLISNDQMRDHKLDLLEPKLFRRWYSNFM 761
Query: 728 VRFSFSD------AGPEFYMPPP--CSVVIQESEK----GNWHIPIASKQDYDDEERRWL 775
V ++F+ + P+ P S IQ +++ WH P+ D E W
Sbjct: 762 VHYNFAAFVGGQCSHPDIGFNPADFFSREIQMNQRVGGASCWHFPLT------DFENEWF 815
Query: 776 CVT 778
C++
Sbjct: 816 CIS 818
>gi|398021737|ref|XP_003864031.1| hypothetical protein, conserved [Leishmania donovani]
gi|322502265|emb|CBZ37349.1| hypothetical protein, conserved [Leishmania donovani]
Length = 694
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 24/131 (18%)
Query: 644 PLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAI--------- 694
PL++LH R + M + A++++WK+ LY +PTG NDD WLY A+
Sbjct: 428 PLVMLHERHVEPKFMTLQ-STAIVQRWKDRGWLYCSPTGLNDDLCWLYGALLLTDPTDTT 486
Query: 695 ----------KFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGP----EFY 740
+ + TND+MRDH F+LL F RW++RH++ F S G +
Sbjct: 487 PTSVTAASASPHRTFVCTNDKMRDHHFRLLSPRAFTRWRDRHRIAFRCSRVGDRMELHWE 546
Query: 741 MPPPCSVVIQE 751
+P P IQ+
Sbjct: 547 LPAPYERCIQQ 557
>gi|146097964|ref|XP_001468276.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134072643|emb|CAM71359.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 694
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 24/131 (18%)
Query: 644 PLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAI--------- 694
PL++LH R + M + A++++WK+ LY +PTG NDD WLY A+
Sbjct: 428 PLVMLHERHVEPKFMTLQ-STAIVQRWKDRGWLYCSPTGLNDDLCWLYGALLLTDPTDTT 486
Query: 695 ----------KFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGP----EFY 740
+ + TND+MRDH F+LL F RW++RH++ F S G +
Sbjct: 487 PTSVTAASASPHRTFVCTNDKMRDHHFRLLSPRAFTRWRDRHRIAFRCSRVGDRMELHWE 546
Query: 741 MPPPCSVVIQE 751
+P P IQ+
Sbjct: 547 LPAPYERCIQQ 557
>gi|417402949|gb|JAA48304.1| Putative mitochondrial ribonuclease p protein 3 [Desmodus rotundus]
Length = 579
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 95/431 (22%), Positives = 164/431 (38%), Gaps = 67/431 (15%)
Query: 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431
F++YE M + + + T + R + A +++ +K + + P ++Y +
Sbjct: 191 FDVYEIMKVRYKSLESGANTLLIRGLIHSDRWREALVLLEDIKKV-MTPSKKNYNDCIQG 249
Query: 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK---GDRVYYLLHKLRTSVR 488
+ DV+ A ++ E +L H + P L+A + +++ +L LR +
Sbjct: 250 ALLHQDVNIAWNLYEELLSHDLIPMMETLKAFFDFGKDKKDDQYSNKLLDILLYLRNNQL 309
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
S A I WF S G W G TT
Sbjct: 310 YPGESFAHSIKAWFESIP---------------------GEQWKG-----------QFTT 337
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLDYY 602
+ C CG+ + I L P E E + I ++ Q+FQ ++ Y
Sbjct: 338 IQKSGQCLGCGKTIESIHLSPEEYEFLKRKILRDVIDGGDQYRKTTPQELQRFQNFVKYC 397
Query: 603 GPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPV 662
PF+ V+D NV + F AR + V+ G+ K ++VL + + +
Sbjct: 398 PPFDIVIDGLNVA----KMFPKARESQVLLGVVSHLAKKNLRVLVLGRKHMLNSRAQWKK 453
Query: 663 NRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLL---GND 717
N +E+ + + + S DD + LYA + C +T D +RDH L
Sbjct: 454 NE--MEEVQKLASCFFADNISEDDPFLLYATLHSGNHCKFITKDLLRDHKACLPDAKTQH 511
Query: 718 FFPRWKERHQVRFS--FSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEER--- 772
F +W++ HQ+ + F + F V+Q + +WHIP D D ER
Sbjct: 512 LFFKWQQGHQLAITNRFPGSKITFQHILSYDTVVQ-TTGDSWHIPY----DEDLVERYSY 566
Query: 773 ----RWLCVTR 779
+WLC+ R
Sbjct: 567 EVPTKWLCLHR 577
>gi|327263624|ref|XP_003216619.1| PREDICTED: mitochondrial ribonuclease P protein 3-like [Anolis
carolinensis]
Length = 580
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 97/396 (24%), Positives = 151/396 (38%), Gaps = 69/396 (17%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A +++ +K I P +YG + N +++ AC + ML V P L+
Sbjct: 227 ALVLLEEIKKFII-PSKGNYGDCIKAALANREINTACMLFHEMLAKNVTPNLDVLQFFFD 285
Query: 466 VSVEAGKGD---RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKD 522
D + Y+L+ LR + +V P EA K W ES+
Sbjct: 286 TGKCVNDTDFKNELIYILNYLRNN--QVYPG------------EALMESIKHWFESI--- 328
Query: 523 TMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASI 582
G W G + TTV C C + L I+L E + E +
Sbjct: 329 ----PGEKWKG-----------NLTTVKNSGKCPSCEQFLESINLTEEEYDILKEKIIKD 373
Query: 583 AI------KRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQ 636
I ++ + FQ++++ PF+ V+D NV +N + VVN + Q
Sbjct: 374 VIHGTDTFRKTTPQELEVFQRFVNQRPPFDIVIDGLNVARVCHKNNPSQTLLDVVNHLVQ 433
Query: 637 KFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIK- 695
+ L+VL + + N ++ K AD + T S DD + LYA +
Sbjct: 434 ----QNLRLLVLGRKHMLNGSRQWNRNN-MVAMQKKAD-FFFTDNVSEDDPFLLYATLHS 487
Query: 696 -FKCLLVTNDEMRDHTFQL---LGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSV-VIQ 750
C VT D +RDH L L F +W+ HQ+ S +G + P + I
Sbjct: 488 GSHCKFVTRDLLRDHKACLSDSLTRRLFFKWQRGHQMVLSDYISGKKIKFEPVLNYDTIV 547
Query: 751 ESEKGNWHIPIASKQDYDDE--ER-------RWLCV 777
++ WHIP YDD ER +WLC+
Sbjct: 548 QTTGNTWHIP------YDDSNLERSSYEVPIKWLCL 577
>gi|440909280|gb|ELR59204.1| Mitochondrial ribonuclease P protein 3 [Bos grunniens mutus]
Length = 584
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 96/433 (22%), Positives = 165/433 (38%), Gaps = 71/433 (16%)
Query: 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431
++YE M + + T + R + A +++ +K + I P ++Y +
Sbjct: 196 IDVYEIMKARYKRLESGAYTLLMRGLIYTDRWREALLLLEDLKKVMI-PSKKNYDDCIQG 254
Query: 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR--K 489
+ DV+ A ++ + +L H + P L+A + K D+ LH + +R +
Sbjct: 255 ALFHQDVNVAWNLYQELLSHDIVPMLETLKAFFDFGKDM-KDDQYSNKLHNILLYLRNNQ 313
Query: 490 VSP--STADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHT 547
+ P S A I WF S G W G T
Sbjct: 314 LYPGESFAHSIKTWFESIP---------------------GEQWKG-----------QFT 341
Query: 548 TVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLDY 601
T+ C CG+ + I L E E E + I K+ ++FQ ++ Y
Sbjct: 342 TIQQSGQCLGCGKTVESIHLSSEEYEFLKEKIMRDVIDGGDQYKKTTPQELKRFQNFVKY 401
Query: 602 YGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQP 661
+ PF+ V+D NV + F AR + V+ + + ++VL + + +
Sbjct: 402 HPPFDVVIDGLNVA----KMFPKARESQVLLNVVSHLAKQNLQVLVLGRKHMLTQ--NSR 455
Query: 662 VNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQL---LGN 716
R +EK + + + S DD + LYA + C +T D MRDH L
Sbjct: 456 WRRVEMEKMQKQASFFFADNISEDDPFLLYATLHSGNHCKFITKDLMRDHKACLPDAKTQ 515
Query: 717 DFFPRWKERHQVRFSFSDAGPEFYMPPPCSV-VIQESEKGNWHIPIASKQDYDDE--ER- 772
F +W++ HQ+ G + S + ++ +WHIP YDD+ ER
Sbjct: 516 RLFFKWQQGHQLAIVSKHPGAKITFQHILSYDTVVQTTGDSWHIP------YDDDLVERY 569
Query: 773 ------RWLCVTR 779
+WLC+ R
Sbjct: 570 SYEVPTKWLCLHR 582
>gi|389602885|ref|XP_001567991.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505639|emb|CAM40753.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 705
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 24/130 (18%)
Query: 644 PLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAI--------- 694
PL++LH R + M + A++++WK+ LY +PTG NDD WLY A+
Sbjct: 428 PLVMLHERHVEPKFMTSQ-STAIVQRWKDRGWLYCSPTGLNDDLCWLYGALLLTDPTDTT 486
Query: 695 ----------KFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGP----EFY 740
+ + TND+MRDH F+LL F RW++RH++ F + G +
Sbjct: 487 PTPVTAASVSSHRTFVCTNDKMRDHHFRLLSPRAFTRWRDRHRIAFRCARVGDRTELHWE 546
Query: 741 MPPPCSVVIQ 750
+P P IQ
Sbjct: 547 LPVPYERCIQ 556
>gi|323454977|gb|EGB10846.1| hypothetical protein AURANDRAFT_62371 [Aureococcus anophagefferens]
Length = 677
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 19/172 (11%)
Query: 609 VDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNR 664
+D ANV Y + NF +++ + + F + P++VL + ++ R
Sbjct: 138 LDGANVAWYGRNFRGGNFDHGQLDRAMGALPAFFDGRVDPVLVLPRKHARASRLSGDARR 197
Query: 665 ALIEKWKNADALYAT-PTGSNDDWYWLYAAIKFK---C-LLVTNDEMRDHTFQLLGNDFF 719
L++ W+ L T P GS+DDWYW+ A++ C V+ND RDH F L F
Sbjct: 198 -LVDGWRREPHLLTTVPPGSDDDWYWMLASLSVASRGCDFAVSNDAARDHHFMHLAPLPF 256
Query: 720 PRWKERHQVRFSF------SDAGPEFYMPPPCSVVIQESEKGN---WHIPIA 762
RWK RH +RF+F + A PP S +Q E + W P+A
Sbjct: 257 QRWKRRHVLRFAFRRDAAGAPAAFALDEPPTFSAELQRLETASHVAWLAPLA 308
>gi|363734112|ref|XP_421241.2| PREDICTED: mitochondrial ribonuclease P protein 3 [Gallus gallus]
Length = 591
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 108/261 (41%), Gaps = 25/261 (9%)
Query: 541 KWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQK 594
KW T + C C +L +L E E + I ++ F+
Sbjct: 339 KWKGHLTNIKDSGQCPVCNHQLEDSELTEEEYNNLRERIIRDVIHGTDTFRKTSPQEFEA 398
Query: 595 FQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRIT 654
FQ +++ PF+ V+D N+ R + + VN + + + L+VL + +
Sbjct: 399 FQTFVENRLPFDIVIDGLNISHIMPRKVQCENLFEAVNCLAKDYAR----LLVLGRKHML 454
Query: 655 GHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQ 712
+ + R ++++ +N + S DD + LYA ++ C VT D +RDH
Sbjct: 455 TNSFNW--KREVMKEMQNKADFFFAENISEDDAFLLYATLRSGKHCKFVTRDFLRDHKAC 512
Query: 713 L---LGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSV-VIQESEKGNWHIPIASKQDYD 768
L + F +W+ HQ+ FS S G P CS + ++ WHIP K ++
Sbjct: 513 LSDSVTRHLFRKWQRGHQIAFSPSAGGKHINFLPACSYDCVVQTTGDTWHIPY--KDTFE 570
Query: 769 DE-----ERRWLCVTRANSHM 784
++ R+WLC+ + M
Sbjct: 571 EKYSYQIPRKWLCLQQKYGTM 591
>gi|270005388|gb|EFA01836.1| hypothetical protein TcasGA2_TC007438 [Tribolium castaneum]
Length = 489
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 106/271 (39%), Gaps = 44/271 (16%)
Query: 537 LGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNS 590
L K +V + + +CK C KLA L E ++ + + I R
Sbjct: 236 LKSHKMLVRSSAINYKGVCKSCNSKLAQFHLTQSEFDEIKQKIIDNVIIGKDVYARTTAQ 295
Query: 591 SFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHN 650
KF+ ++ F+ V+D NV YS +PA+V + G+ Q
Sbjct: 296 ELSKFKNFVSKMPKFDVVIDGLNVA-YSAGLKQPAQVTS---GLVQS------------- 338
Query: 651 RRITGHKMDQ-----PVNRALIEKW--------KNADALYATPTGSNDDWYWLYAAIKF- 696
+ H +DQ + R+ + +W K ++ T S DD Y LY A+
Sbjct: 339 --VVAHFVDQGKEVLLLGRSHMNRWPRNNWDYVKENATIFLTENLSQDDPYLLYCALHSG 396
Query: 697 -KCLLVTNDEMRDHTFQLLG---NDFFPRWKERHQVRFSFSDAGPEF-YMPPPCSVVIQE 751
++VT D MR H F L F RW + Q + F+ G + + PP + +
Sbjct: 397 KDTIIVTKDLMRGHKFLLKDVRLKILFDRWLSQRQYQLVFAKEGGDCTFKKPPNYTHLAQ 456
Query: 752 SEKGNWHIPIASKQDYDDEERRWLCVTRANS 782
WHIP S+ + + WLCV NS
Sbjct: 457 KNGPFWHIPCKSENKFVTNKTYWLCVQNNNS 487
>gi|348516029|ref|XP_003445542.1| PREDICTED: mitochondrial ribonuclease P protein 3-like [Oreochromis
niloticus]
Length = 617
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 90/408 (22%), Positives = 160/408 (39%), Gaps = 77/408 (18%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++++ +K +P R+YG ++ +GD A ++ + ++++G+ P + E L +
Sbjct: 251 ALNILQELKKES-SPSSRNYGDIIAAAMQHGDTSTAWALYDELIDNGLSPHQETWETLFK 309
Query: 466 VS------------VEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKK 513
V+ +A + +R +L +R + S A I WF S L +
Sbjct: 310 VAGKKEGEEGTSAKSQAEQQERHLGILLHMRNNQIYPQQSFASSIKSWFES-----LTGQ 364
Query: 514 KWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETE 573
+W G W TT +C+ CG +L I L E +
Sbjct: 365 EWT-----------------------GNW----TTATPKGVCRSCGSELESIQLTAEEYQ 397
Query: 574 KFAESVASIAIK------RERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARV 627
+ + V + I+ + Q+F+ ++ F+ VVD NV ++ K +
Sbjct: 398 QLKDRVMTDIIEGQDVFTKTTPEELQRFKLFVKRKPVFDVVVDGLNVANINKDKSKQSAT 457
Query: 628 NAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDW 687
VV + + + ++VL + + + + +R + + + T S DD
Sbjct: 458 LLVV--VSELVDRQGLTVLVLGRKHML--RPSRSWDRHNMNLIQQKAHCFFTDNISEDDP 513
Query: 688 YWLYAAIKF--KCLLVTNDEMRDHTFQL---LGNDFFPRWKERHQVRF-SFSDAG--PEF 739
+ LYA + C V+ D MRDH L F +W+ HQ+ AG F
Sbjct: 514 FLLYATLHSGNHCRFVSRDLMRDHKACLPDGATRRLFFKWQRGHQLVVDGHVTAGRRVRF 573
Query: 740 YMPPPCSVVIQESEKGNWHIPIASKQDYDDEERR--------WLCVTR 779
P ++Q S +WHIP YDD E R WLC+ +
Sbjct: 574 QSIPSYDTIVQTSGGNSWHIP------YDDTEDRSTYEVPQHWLCLNK 615
>gi|91080915|ref|XP_973846.1| PREDICTED: similar to SD17694p [Tribolium castaneum]
Length = 473
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 106/271 (39%), Gaps = 44/271 (16%)
Query: 537 LGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNS 590
L K +V + + +CK C KLA L E ++ + + I R
Sbjct: 220 LKSHKMLVRSSAINYKGVCKSCNSKLAQFHLTQSEFDEIKQKIIDNVIIGKDVYARTTAQ 279
Query: 591 SFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHN 650
KF+ ++ F+ V+D NV YS +PA+V + G+ Q
Sbjct: 280 ELSKFKNFVSKMPKFDVVIDGLNVA-YSAGLKQPAQVTS---GLVQS------------- 322
Query: 651 RRITGHKMDQ-----PVNRALIEKW--------KNADALYATPTGSNDDWYWLYAAIKF- 696
+ H +DQ + R+ + +W K ++ T S DD Y LY A+
Sbjct: 323 --VVAHFVDQGKEVLLLGRSHMNRWPRNNWDYVKENATIFLTENLSQDDPYLLYCALHSG 380
Query: 697 -KCLLVTNDEMRDHTFQLLG---NDFFPRWKERHQVRFSFSDAGPEF-YMPPPCSVVIQE 751
++VT D MR H F L F RW + Q + F+ G + + PP + +
Sbjct: 381 KDTIIVTKDLMRGHKFLLKDVRLKILFDRWLSQRQYQLVFAKEGGDCTFKKPPNYTHLAQ 440
Query: 752 SEKGNWHIPIASKQDYDDEERRWLCVTRANS 782
WHIP S+ + + WLCV NS
Sbjct: 441 KNGPFWHIPCKSENKFVTNKTYWLCVQNNNS 471
>gi|326920739|ref|XP_003206626.1| PREDICTED: mitochondrial ribonuclease P protein 3-like [Meleagris
gallopavo]
Length = 574
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 102/238 (42%), Gaps = 21/238 (8%)
Query: 555 CKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLDYYGPFEAV 608
C C +L +L E E + S I ++ F+ FQ +++ PF+ V
Sbjct: 184 CPVCNHQLEDSELTEEEYSNLRERIISDVIHGTDTFRKTSPQEFEAFQTFVENRLPFDIV 243
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
+D N+ R + + VN + + + L+VL + + + ++ R +++
Sbjct: 244 IDGLNISHIMPRKVQCENLFEAVNCLAKDYGR----LLVLGRKHMLTNSLNW--KREVMK 297
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQL---LGNDFFPRWK 723
+ +N + S DD + LYA ++ C VT D +RDH L + F +W+
Sbjct: 298 EMQNKADFFFAENISEDDAFLLYATLRSGKHCKFVTRDFLRDHKACLSDSVTRHLFRKWQ 357
Query: 724 ERHQVRFSFSDAGPEFYMPPPCSV-VIQESEKGNWHIP---IASKQDYDDEERRWLCV 777
HQ+ FS S G P CS + ++ WHIP I ++ R+WLC+
Sbjct: 358 RGHQIVFSPSAGGKHIKFLPACSYDCVVQTTGDTWHIPYKDIFEEKYSYQIPRKWLCL 415
>gi|348674664|gb|EGZ14482.1| hypothetical protein PHYSODRAFT_505070 [Phytophthora sojae]
Length = 551
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 107/509 (21%), Positives = 196/509 (38%), Gaps = 148/509 (29%)
Query: 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-------GINP---RLRSYGPALSVFCN 434
+NEA +V ++ ++ GD + A+ ++ +++ G P R+ P L C
Sbjct: 78 LNEAVFGSVIKLHLAAGDTEAAWKLINKLRKAVRARSKAGQEPPKLHFRTVSPLLEHECR 137
Query: 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD-------------------- 474
+ A S + + +H V + L+++ + K D
Sbjct: 138 HDQFASAYSRWQQLKQHDVEWTSAMEDVLVQMVIACVKSDEQQLNEYTEMPESEASEPHF 197
Query: 475 --RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWH 532
++ LLH L+ + R+VSPS A + F ++A + +EN H
Sbjct: 198 HAQMASLLHDLQITCREVSPSNAQRLLHAF--RDAGYI-------------VENVPSDAH 242
Query: 533 GLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSF 592
+ K C CCG+ L + E E+ A +A+I +R + +
Sbjct: 243 M-----RSK-------------CPCCGQALCKQGM--TEQER-AYMLAAIESRRSKLAPE 281
Query: 593 QKFQKWLDYYG-----------------------PFEAVVDAANVGLYSQRNFKPA---- 625
+++LD + P V+D N+ Y +NF+
Sbjct: 282 NTVKEYLDPFREWLMLRHENFQLQNVVAGSKDGRPLHFVLDGPNIA-YINQNFEAGTYRL 340
Query: 626 -RVNAVVNGIRQK--FPSKKWPLIVLHNRRITGHKMDQ----------------PVNRAL 666
+V+A+ ++ + S P L ++ + + Q P +A+
Sbjct: 341 DQVDAIAKDLQAQGHLVSITMPQAYLADKFVVRIRTKQNKSMRRQGKFVSRERTPEEKAI 400
Query: 667 IEKWKNADALYATPTG-SNDDWYWLYAAIKF--KCLLVTNDEMRDH--TFQLLGNDFFPR 721
+E+WK+ D LY+ T +DD +WLYA++ + +VTND+ RDH + + D R
Sbjct: 401 MERWKDEDMLYSCRTDFLSDDLFWLYASVLMGREGRVVTNDQGRDHGSSTPAISMDLIAR 460
Query: 722 WKE---------RHQVRFSFSDAG----------PEFYMPPPCSVVIQESEKGNWHIPIA 762
WK+ +V F+ + AG P P S V Q + ++H PIA
Sbjct: 461 WKDMTTVNIEIKHEEVAFNAAAAGNLTTPIPIESIRLRHPEPFSRVPQVTAPQHFHFPIA 520
Query: 763 SKQDYDD---------EERRWLCVTRANS 782
+ + ++ + RWLCV R ++
Sbjct: 521 EQANMNEHPNQSMGQRKRTRWLCVHRKDA 549
>gi|351700058|gb|EHB02977.1| Mitochondrial ribonuclease P protein 3 [Heterocephalus glaber]
Length = 582
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 97/431 (22%), Positives = 169/431 (39%), Gaps = 67/431 (15%)
Query: 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431
++YE M + + T + R + A +++ +K + + P +R+Y +
Sbjct: 194 IDVYEIMKARYKSLESGAYTLLIRGLVQSDKWREALQLLEDIKKV-MTPSVRNYNDCIQG 252
Query: 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK---GDRVYYLLHKLRTSVR 488
+ DV+ A ++ + +L H + P L+A + +++ +L LR +
Sbjct: 253 ALLHQDVNIAWNLYQELLSHKLTPMLETLKAFFDFGKDIKNDHYSNKLLDILLYLRNNQL 312
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
S A I WF S + K+W KG++ TT
Sbjct: 313 YPGESFAYSIKTWFES-----IPGKQW-----------------------KGQF----TT 340
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLDYY 602
+ C CG + I L P E + + V I ++ ++F+ ++ +
Sbjct: 341 IQKSGQCSGCGNTIESIHLSPEEYDFLKKKVMKDVIDGGDQYRKTTPQELKRFENFVKSH 400
Query: 603 GPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPV 662
PF+ V+D NV + F AR + + + +K L+VL + + K
Sbjct: 401 PPFDIVIDGLNVA----KMFSKARESQFLLDVVSLLAKQKLQLLVLGRKHML--KQRSRW 454
Query: 663 NRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDH---TFQLLGND 717
R +EK K + + S DD + LYA + C +TND MRDH F
Sbjct: 455 RRDEMEKVKKQASCFFADDISQDDLFLLYATLNSGNHCKFITNDLMRDHKACLFDAKTKH 514
Query: 718 FFPRWKERHQ--VRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEER--- 772
F +W++ HQ +R F + F+ V+Q + +WHIP D D ER
Sbjct: 515 LFFKWQQGHQLAIRSVFPGSHITFHHSLHYDTVVQ-TTGDSWHIPY----DEDLVERYSY 569
Query: 773 ----RWLCVTR 779
+WLC+ R
Sbjct: 570 EVPTKWLCLQR 580
>gi|301774893|ref|XP_002922861.1| PREDICTED: mitochondrial ribonuclease P protein 3-like [Ailuropoda
melanoleuca]
gi|281342881|gb|EFB18465.1| hypothetical protein PANDA_011891 [Ailuropoda melanoleuca]
Length = 581
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 109/259 (42%), Gaps = 31/259 (11%)
Query: 541 KWIVSHTTVGGDALCKCCGEKLAIIDLDPIETE----KFAESV--ASIAIKRERNSSFQK 594
+W TTV C CG+ + I L P E E KF V K+ ++
Sbjct: 332 QWKGQFTTVKESGHCLGCGKAIESIHLSPEEYEFLKGKFMRDVIDGGDQYKKTTPQELER 391
Query: 595 FQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRIT 654
FQ ++ PF+ V+D NV + F AR + V+ G+ + + L+VL + +
Sbjct: 392 FQNFVKSRPPFDIVIDGLNVA----KTFPKARESQVLLGVVSQLAKQNLQLLVLGRKHML 447
Query: 655 GHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQ 712
+ + ++K + + + S DD + LYA + C +T D MRDH
Sbjct: 448 TQ--NSKWRKDEMKKVQQQASCFFADNISEDDPFLLYATLHSGNHCRFITKDLMRDHKAS 505
Query: 713 LL---GNDFFPRWKERHQVRFS--FSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDY 767
L F +W++ HQ+ + F+ + F P V+Q + +WHIP D
Sbjct: 506 LRDAKTQRLFFKWQQGHQLAITRRFAGSKLTFQHIPSYDTVVQ-TTGDSWHIPY----DE 560
Query: 768 DDEER-------RWLCVTR 779
D ER +WLC+ R
Sbjct: 561 DMVERYSYEVPTKWLCLHR 579
>gi|345306253|ref|XP_001512026.2| PREDICTED: mitochondrial ribonuclease P protein 3-like
[Ornithorhynchus anatinus]
Length = 574
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 109/265 (41%), Gaps = 29/265 (10%)
Query: 541 KWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQK 594
+W TTV C CG+ L + L P E + E + I ++ +K
Sbjct: 320 RWKGQFTTVQKSGQCSACGKNLESLHLSPEEYDFLKEKIMKDVIEGSDQFRKTSPEELEK 379
Query: 595 FQKWLDYYGPFEAVVDAANVGLYSQRNFKP-ARVNAVVNGIRQKFPSKKWPLIVLHNRRI 653
++ ++ + PF+ V+D NV N K R + + + + K L+VL +
Sbjct: 380 YKNFVKRHPPFDIVIDGLNVA-----NMKSKVRQSLTLLNMVTQLAQKNLRLLVLGRK-- 432
Query: 654 TGHKMDQPVN--RALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDH 709
H + N + +E + A + T S DD + LYA + C VT D +RDH
Sbjct: 433 --HMLYGTANWRKHEMEAVQKNAACFFTENTSEDDPFLLYATLHSGNHCKFVTQDLLRDH 490
Query: 710 TFQL---LGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSV-VIQESEKGNWHIP----I 761
L L F RW+ HQ+ FS AG P S + ++ +WHIP +
Sbjct: 491 KACLPDALTRRLFFRWQRGHQLGFSSYSAGNRIVFQPVLSYDTLVQTTGDSWHIPYDENL 550
Query: 762 ASKQDYDDEERRWLCVTRANSHMNR 786
+ Y + +WLC+ R + R
Sbjct: 551 VERYSY-EVPTKWLCLCREHEDRRR 574
>gi|426248382|ref|XP_004017942.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 1 [Ovis
aries]
Length = 485
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 96/433 (22%), Positives = 163/433 (37%), Gaps = 71/433 (16%)
Query: 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431
++YE M + + T + R + A +++ +K + I P ++Y +
Sbjct: 97 IDVYEIMKARYKRLESGAYTLLMRGLIYTDRWREALLLLEDLKKVMI-PSKKNYDDCIQG 155
Query: 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR--K 489
+ DV+ A ++ + +L H + P L+A + K D+ LH + +R +
Sbjct: 156 ALFHQDVNVAWNLYQELLNHDIVPMLETLKAFFDFGKDM-KDDQYSNKLHNILLYLRNNQ 214
Query: 490 VSP--STADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHT 547
+ P S A I WF S G W G T
Sbjct: 215 LYPGESFAHSIKTWFESIP---------------------GEQWKG-----------QFT 242
Query: 548 TVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLDY 601
T+ C CG+ + I L E E E + I K+ ++FQ ++ Y
Sbjct: 243 TIQQSGQCLGCGKTVESIHLSSEEYEFLKEKIMRDVIDGGDQYKKTTPQELKRFQNFVKY 302
Query: 602 YGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQP 661
PF+ V+D NV + F AR + V+ + + ++VL + + +
Sbjct: 303 CPPFDVVIDGLNVA----KMFPKARESQVLLNVVSHLAKQNLQVLVLGRKHMLTQ--NSR 356
Query: 662 VNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLL---GN 716
R +EK + + + S DD + LYA + C +T D MRDH L
Sbjct: 357 WRRVEMEKMQKQASFFFADNISEDDPFLLYATLHSGNHCKFITKDLMRDHRACLPDAKTQ 416
Query: 717 DFFPRWKERHQVRFSFSDAGPEFYMPPPCSV-VIQESEKGNWHIPIASKQDYDDE--ER- 772
F +W++ HQ+ G + S + ++ +WHIP YDD ER
Sbjct: 417 RLFFKWQQGHQLAIVSKHPGAKITFQHILSYDTVVQTTGDSWHIP------YDDNLVERY 470
Query: 773 ------RWLCVTR 779
+WLC+ R
Sbjct: 471 SYEVPTKWLCLHR 483
>gi|449504396|ref|XP_002199796.2| PREDICTED: mitochondrial ribonuclease P protein 3 [Taeniopygia
guttata]
Length = 480
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/388 (22%), Positives = 153/388 (39%), Gaps = 51/388 (13%)
Query: 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
MAF +++ +K + I R+ Y + ++ +++ A + ML GV P L++
Sbjct: 125 MAFTVLEEVKKIMIPSRM-CYESCIKAASHHQEMELAFELYNEMLAKGVIPTLDVLQSFF 183
Query: 465 RVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTM 524
S KG + L + +R+ + + K R K W ESL
Sbjct: 184 DFS-RGMKGAELQKELFGILLYLRE---------NQIYPHKTFMR-SIKLWFESL----- 227
Query: 525 ENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI 584
GG W G T V C C +L +L E +E + I
Sbjct: 228 --PGGNWRG-----------QLTNVKDSGQCPVCKHQLEESNLTEEEYSHLSERILKDVI 274
Query: 585 ------KRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKF 638
++ + FQ +++ PF+ V+D NV R + + VN + ++
Sbjct: 275 HGTDTFRKTSPKELEAFQTFVENRLPFDIVIDGLNVSHIKSRRMQCENLLDAVNCLAKEN 334
Query: 639 PSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF-- 696
L+VL + + + + R ++++ +N + S DD + LYA ++
Sbjct: 335 AR----LLVLGRKHMLMNSSNW--KREIVKEMQNKADFFFAENISEDDAFLLYATLRSGK 388
Query: 697 KCLLVTNDEMRDHTFQL---LGNDFFPRWKERHQVRFSFSDAGPEF-YMPPPCSVVIQES 752
C VT D +RDH L L F +W+ HQ+ F S G ++P + ++
Sbjct: 389 HCRFVTRDFLRDHKACLSDSLTRHLFRKWQRGHQIVFFPSADGRSIKFLPALRYDCVVQT 448
Query: 753 EKGNWHIPI--ASKQDYDDE-ERRWLCV 777
WHIP ++ Y + R+WLC+
Sbjct: 449 TGDTWHIPYKDVFEEKYSYQIPRKWLCI 476
>gi|242079531|ref|XP_002444534.1| hypothetical protein SORBIDRAFT_07g023400 [Sorghum bicolor]
gi|241940884|gb|EES14029.1| hypothetical protein SORBIDRAFT_07g023400 [Sorghum bicolor]
Length = 121
Score = 69.7 bits (169), Expect = 6e-09, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 47/75 (62%)
Query: 448 MLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEA 507
M GV EEPEL LLRV+ + GK D VY LLH+ R +R+V +TA V+ WF S
Sbjct: 1 MDASGVVLEEPELAVLLRVNADKGKADEVYRLLHRTRALIRQVCGTTAQVVEAWFWSDAT 60
Query: 508 ARLGKKKWNESLIKD 522
+++G KW+ S +K+
Sbjct: 61 SQVGVDKWDPSKVKE 75
>gi|410962049|ref|XP_003987589.1| PREDICTED: LOW QUALITY PROTEIN: mitochondrial ribonuclease P
protein 3 [Felis catus]
Length = 582
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 94/402 (23%), Positives = 155/402 (38%), Gaps = 77/402 (19%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A +++ +K + I P ++Y + + DV+ A ++ + +L H + P L+A
Sbjct: 228 ALLLLEDIKKVMI-PSKKNYNDCIEGALLHQDVNLAWNLYQELLGHNLIPMLKTLKAFF- 285
Query: 466 VSVEAGK-------GDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNES 518
+ GK ++++ +L LR + S A I WF S
Sbjct: 286 ---DFGKNIKDDQYSNKLFDILLYLRNNHLYPGESFAHSIKTWFESVP------------ 330
Query: 519 LIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAES 578
G W G TT+ G C CG+ + + L P E E E
Sbjct: 331 ---------GEQWKG-----------QFTTIQGSGQCSGCGKTIESLHLSPEEYEFLKEK 370
Query: 579 VASIAI------KRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVN 632
+ I + ++FQ ++ PF+ V+D NV + F AR + V+
Sbjct: 371 IMRDVIDGGDQYXKTTPQELERFQNFVKCCPPFDIVIDGLNVA----KTFPKARESQVLL 426
Query: 633 GIRQKFPSKKWPLIVLHNRR-ITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLY 691
+ + + L+VL + +T H + ++ K A +A S DD + LY
Sbjct: 427 HVVSQLAKQNLQLLVLGRKHMLTQHSRWRKDEMKKVQ--KQASCFFADNI-SADDPFLLY 483
Query: 692 AAIKF--KCLLVTNDEMRDHTFQLL---GNDFFPRWKERHQVRFSFSDAGPE--FYMPPP 744
A + C +T D MRDH L F +W++ HQ+ G + F P
Sbjct: 484 ATLHSGNHCKFITKDLMRDHKACLHDAKTQRLFFKWQQGHQLAIINRLPGSKITFQHIPS 543
Query: 745 CSVVIQESEKGNWHIPIASKQDYDDEER-------RWLCVTR 779
V+Q + +WHIP D D ER +WLC+ R
Sbjct: 544 YDTVVQ-TTGDSWHIPY----DEDLLERYSYEVPTKWLCLHR 580
>gi|403263942|ref|XP_003924257.1| PREDICTED: mitochondrial ribonuclease P protein 3 [Saimiri
boliviensis boliviensis]
Length = 581
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 95/431 (22%), Positives = 163/431 (37%), Gaps = 67/431 (15%)
Query: 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431
++YE M ++ T + R + AF +++ +K + + P ++Y +
Sbjct: 193 IDVYEIMKARYKILDSGGYTLLIRGLIQSDRWKEAFLLLEDLKKV-MTPSRKNYDDCIQG 251
Query: 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGDRVYYLLHKLRTSVR 488
+ DV+ A ++ + +L H + P L+A + +++ +L LR +
Sbjct: 252 ALLHQDVNTAWNLYQELLGHNIIPMLETLKAFFDFGKDIKDDNYSNKLLDILLYLRNNQL 311
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
S A I WF S G W G TT
Sbjct: 312 YPGESFAHSIKTWFESVP---------------------GKQWKG-----------QFTT 339
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLDYY 602
+ C CG+ + I L P + E + I ++ ++F+ ++
Sbjct: 340 IQKSGQCSGCGKTIESIQLSPEDYEFLKGRIMRDVIDGGDQYRKTTPQELKRFENFVKSC 399
Query: 603 GPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPV 662
PF+ V+D NV + F AR + ++ + + + L+VL R+ K Q
Sbjct: 400 PPFDIVIDGLNVA----KMFPKARESKLLLNVVSQLAKQNLRLLVL-GRKHMLRKSSQWR 454
Query: 663 NRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLLGND--- 717
+ E K A +A S DD + LYA + C +TND MRDH L +
Sbjct: 455 KDEMEEVQKQARCFFADNI-SKDDPFLLYATLHSGNHCKFITNDLMRDHKACLPDANTQR 513
Query: 718 FFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEER--- 772
F +W++ HQ+ F + F V+Q + +WHIP D D ER
Sbjct: 514 LFFKWQQGHQLAIINGFPGSKLTFQHILSYDTVVQ-TTGDSWHIPY----DEDLVERYSY 568
Query: 773 ----RWLCVTR 779
+WLC+ R
Sbjct: 569 EVPTKWLCLHR 579
>gi|297694927|ref|XP_002824715.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 2 [Pongo
abelii]
Length = 583
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 86/382 (22%), Positives = 140/382 (36%), Gaps = 64/382 (16%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGD 474
I P ++Y + + DV+ A ++ + +L H + P L+A + +
Sbjct: 240 ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSN 299
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
++ +L LR + S A I WF S G W G
Sbjct: 300 KLLDILSYLRNNQLYPGESFAHSIKTWFESVP---------------------GKQWKG- 337
Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
TTV C CG+ + I L P E E + I ++
Sbjct: 338 ----------QFTTVQKSGRCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTT 387
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
++F+ ++ PF+ V+D NV + F R + + + + + L+VL
Sbjct: 388 PWELKRFKNFIKSCPPFDVVIDGLNVA----KMFPKVRESQFLLNVVSQLAKQNLRLLVL 443
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEM 706
R+ K Q + E K A +A S DD + LYA + C +T D M
Sbjct: 444 -GRKHMLRKCSQWSQDEMKEVQKQASCFFADNI-SEDDPFLLYATLHSGNHCRFITRDLM 501
Query: 707 RDHTFQLL---GNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSV-VIQESEKGNWHIPIA 762
RDH L F +W++ HQ+ + G + P S + ++ +WHIP
Sbjct: 502 RDHKACLPDAKTQRLFFKWQQGHQLAITNRFPGSKLTFQPILSYDTVVQTTGDSWHIPY- 560
Query: 763 SKQDYDDEER-------RWLCV 777
D D ER +WLC+
Sbjct: 561 ---DEDLVERYSYEVPTKWLCL 579
>gi|395838223|ref|XP_003792018.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 1
[Otolemur garnettii]
Length = 485
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 92/397 (23%), Positives = 151/397 (38%), Gaps = 67/397 (16%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A +++ MK + I P ++Y + DVD A ++ + +L H + P L+A
Sbjct: 131 ALLLLEDMKKVTI-PSRKNYHDCIQGALLRQDVDIAWNLYQELLGHNLIPMLETLKAFFD 189
Query: 466 VSVEAGK---GDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKD 522
+ + +++ +L LR + S A I WF S
Sbjct: 190 LGKDIKDDYYSNKLQDILLYLRNNQLYPGESFAHSIKTWFESVP---------------- 233
Query: 523 TMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASI 582
G W G TT+ C CG+ + I+L P E E +
Sbjct: 234 -----GQQWKG-----------EFTTIRKSGQCSSCGKTIESIELSPEEYEFLTGKIMRD 277
Query: 583 AI------KRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQ 636
I K+ + F+K++ PF+ V+D NV + F AR + V+ +
Sbjct: 278 VIDGGDQYKKTTPWELRTFEKFVKSCPPFDIVIDGLNVA----KMFPKARESQVLLELVS 333
Query: 637 KFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF 696
+ + L+VL + + K + +E + + + S DD + LYA +
Sbjct: 334 QLAKQNLRLLVLGRKHML--KKSSRWRKDEMEMVQKQASCFFADDISKDDPFLLYATLHS 391
Query: 697 --KCLLVTNDEMRDHTFQLL---GNDFFPRWKERHQ--VRFSFSDAGPEFYMPPPCSVVI 749
C VT D MRDH L F +W++ HQ +R F + F + V+
Sbjct: 392 GNHCKFVTKDLMRDHKACLPDAKTQRLFFKWQQGHQLAIRNKFPGSKMIFQHILSYNTVV 451
Query: 750 QESEKGNWHIPIASKQDYDDEER-------RWLCVTR 779
Q + +WHIP D D ER +WLC+ R
Sbjct: 452 Q-TTGDSWHIPY----DEDRVERYSYEVPTKWLCLHR 483
>gi|195162441|ref|XP_002022064.1| GL14442 [Drosophila persimilis]
gi|194103962|gb|EDW26005.1| GL14442 [Drosophila persimilis]
Length = 530
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 111/254 (43%), Gaps = 29/254 (11%)
Query: 544 VSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQK--------F 595
V+ + +G C+ C + L + + E + +E + R FQK F
Sbjct: 282 VTASRLGPLGKCQECRQHLQPVAISDEEFRQLSECFLEKVLIR--GDVFQKSTPEEMLRF 339
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITG 655
+++++ P++ V+D NV + P ++ ++ + + F + ++VL G
Sbjct: 340 KQYVEKTAPYDCVIDGLNVAYSTGAKKAPQQLAKLLATVVRHFKERHKRVLVL------G 393
Query: 656 HKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQL 713
+ + +++ + +N +L+ T S+DD + LYA I+ + + D MR H F L
Sbjct: 394 REHMRKWSKSAMHYVQNNASLFLTNNLSHDDPFLLYATIRSGQETDFFSRDLMRTHAF-L 452
Query: 714 LGNDF---FPRWKERHQVRFSFSDAGPEFYMPPPC--SVVIQESEKGNWHIPIA-----S 763
LG + F RW++ HQ + + P + + ++E G+WH+P +
Sbjct: 453 LGAELKPIFRRWQQEHQFSLVTQTQTGKIIVKEPIRHRLSVHQAEGGSWHVPYCDVYTPN 512
Query: 764 KQDYDDEERRWLCV 777
D D WLC+
Sbjct: 513 PTDSFDVPEHWLCL 526
>gi|344274188|ref|XP_003408900.1| PREDICTED: mitochondrial ribonuclease P protein 3-like [Loxodonta
africana]
Length = 585
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 100/434 (23%), Positives = 166/434 (38%), Gaps = 72/434 (16%)
Query: 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431
++YE M + + A + + R + A +++ + + I P R+Y +
Sbjct: 196 IDVYEIMKVRYKILEPAGYSLLIRGLIHTDRWREALLLLEDFEKVMI-PSKRNYDDCIQG 254
Query: 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK---GDRVYYLLHKLRTSVR 488
+ DV+ A ++ + +L H + P LEA + +++ +L LR +
Sbjct: 255 ALLHQDVNTAWNLYQKLLGHDLIPMLETLEAFFDFGKDIKDHQYANKLLDILLYLRNNQL 314
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
S A I WF S G W G TT
Sbjct: 315 YPGESFAHSIKAWFESVP---------------------GEQWKG-----------QFTT 342
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLDY- 601
+ C CG+ + I L P E E E++ I K+ ++FQ +++
Sbjct: 343 IRKSGRCSGCGKTMESIYLSPEEYEFLKENIMRNVIDGGDQYKKTTPEELKRFQNFVNND 402
Query: 602 YGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQ- 660
PF+ V+D NV + F AR + V+ + + + L+VL + H ++Q
Sbjct: 403 CPPFDIVIDGLNVA----KMFPKARESQVLLNVVSQLAKQNLRLLVLGRK----HMLNQH 454
Query: 661 PVNRA-LIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLL--- 714
P R +EK + + + S DD Y LYA + C +T D MRDH L
Sbjct: 455 PRWRKDEMEKVQKQASCFFADDISEDDPYLLYATLHSGNHCKFITKDLMRDHKACLPDAK 514
Query: 715 GNDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEER 772
F +W++ HQ+ F + F V+Q + +WHIP D D ER
Sbjct: 515 TQRLFFKWQQGHQLAIINRFPGSKISFQHILSYDTVVQ-TTGDSWHIPY----DEDLVER 569
Query: 773 -------RWLCVTR 779
+WLC+ R
Sbjct: 570 YSYEVPNKWLCLHR 583
>gi|296214809|ref|XP_002753863.1| PREDICTED: mitochondrial ribonuclease P protein 3-like isoform 1
[Callithrix jacchus]
Length = 582
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 95/431 (22%), Positives = 160/431 (37%), Gaps = 67/431 (15%)
Query: 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431
++YE M ++ T + R + AF +++ +K + + P ++Y +
Sbjct: 194 IDVYEIMKARYKILDSGGYTLLIRGLIQSDRWREAFLLLEDLKKV-MTPSKKNYDDCIQG 252
Query: 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGDRVYYLLHKLRTSVR 488
+ DV+ A ++ + +L H + P L+A + +++ +L LR +
Sbjct: 253 ALLHQDVNTAWNLYQELLGHDIIPMLETLKAFFDFGKDIKDDNYSNKLLDILLYLRNNHL 312
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
S A I WF S G W G TT
Sbjct: 313 YPGESFAHSIKTWFESVP---------------------GEQWKG-----------QFTT 340
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLDYY 602
+ C CG+ + I L P + E + I K+ +F+ ++
Sbjct: 341 IQKSGQCSGCGQNIESIQLSPEDYEFLKGRIMRDVIDGGDQYKKTTPQELNRFENFVKSC 400
Query: 603 GPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPV 662
PF+ V+D NV + F AR + ++ + + + L+VL R+ K Q
Sbjct: 401 PPFDIVIDGLNVA----KMFPKARESQLLLNVVSQLAKQNLRLLVL-GRKHMLRKSSQWR 455
Query: 663 NRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLL---GND 717
+ E K A +A S DD + LYA + C +T D MRDH L
Sbjct: 456 KDEMEEVQKQARCFFADNI-SKDDPFLLYATLHSGNHCKFITKDLMRDHKACLPDAKTQR 514
Query: 718 FFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEER--- 772
F +W++ HQ+ F + F V+Q + +WHIP D D ER
Sbjct: 515 LFFKWQQGHQLAIINGFPGSKLTFQRILSYDTVVQ-TTGDSWHIPY----DEDLVERYSY 569
Query: 773 ----RWLCVTR 779
+WLC+ R
Sbjct: 570 EVPTKWLCLHR 580
>gi|195402009|ref|XP_002059603.1| GJ14858 [Drosophila virilis]
gi|194147310|gb|EDW63025.1| GJ14858 [Drosophila virilis]
Length = 541
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 116/257 (45%), Gaps = 34/257 (13%)
Query: 547 TTVGGDALCKC--CGEKLAIIDLDPIETEKFAES-VASIAIKRERNSSFQK--------F 595
TT D + KC C + L + + + + ES +A + I RN FQK F
Sbjct: 292 TTTRLDRMGKCGACQQHLQHVAISDAQFAELRESFLAKVLI---RNDVFQKSTPQEVARF 348
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNA-VVNGIRQKFPSKKWPLIVLHNRRIT 654
+++++ P++ V+D NV YS N KP + A ++ + + F ++ ++VL
Sbjct: 349 KQYVEQTAPYDCVIDGLNVA-YSTGNKKPPQQLAKLLATVVRYFKERRKRVLVL------ 401
Query: 655 GHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQ 712
G + + +R ++ +N +++ T ++DD + LYA + + D MR H F
Sbjct: 402 GRQHMRNWSRPAMQYIQNNASVFLTNNLTHDDPFLLYATLHSGQDTDFFSRDLMRSHAF- 460
Query: 713 LLGNDF---FPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGN-WHIPIASKQDYD 768
LLG++ F RW++ HQ + + P + + GN WH+P +
Sbjct: 461 LLGSELKAIFRRWQQEHQYSLVTQTQTGQIIVKEPIRYRLSAHKVGNVWHVPCCEVYTVN 520
Query: 769 DEE-----RRWLCVTRA 780
E +WLC++ A
Sbjct: 521 PSESFEVPEKWLCLSIA 537
>gi|355736111|gb|AES11892.1| hypothetical protein [Mustela putorius furo]
Length = 395
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 91/401 (22%), Positives = 157/401 (39%), Gaps = 75/401 (18%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL- 464
A +++ +K + I P +R+Y + + DV A ++ + +L H + P L+A
Sbjct: 42 ALLLLEDVKKVLI-PSVRNYNDCIEGALLHQDVSLAWNLYQELLGHDLTPMLKTLKAFFD 100
Query: 465 --RVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKD 522
+ + +++ +L LR + S A I WF S
Sbjct: 101 FGKNVKDKQYSNKLLDILLYLRNNHLYPEESFAHSIKTWFESVP---------------- 144
Query: 523 TMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASI 582
G W KG++I T+ C CG+ + I L P E E +
Sbjct: 145 -----GEQW-------KGQFI----TIKESGQCSGCGKTMESIHLSPEEYEFLKGEIMRD 188
Query: 583 AI------KRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQ 636
I K+ ++FQ ++ PF+ V+D NV + F R + V+ +
Sbjct: 189 VIDGGDQYKKTTPQELKRFQSFVKCCPPFDIVIDGLNVA----KTFPKVRESQVLLDVVS 244
Query: 637 KFPSKKWPLIVLHNRR-ITGH---KMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYA 692
+ + L+VL + +T H + D+ ++K + + + S DD + LYA
Sbjct: 245 QLAKQNLQLLVLGRKHMLTQHSRWRKDE------MKKVQQQASCFFADNISEDDPFLLYA 298
Query: 693 AIKF--KCLLVTNDEMRDHTFQLLG---NDFFPRWKERHQVRF--SFSDAGPEFYMPPPC 745
+ C +T D MRDH L F +W++ HQ+ + + F P
Sbjct: 299 TLHSGNHCKFITKDLMRDHKACLRNAKTQRLFFKWQQGHQLAIVNRLTRSKITFQHIPSY 358
Query: 746 SVVIQESEKGNWHIPIASKQDYDDEER-------RWLCVTR 779
+ V+Q + +WHIP D D ER +WLC+ R
Sbjct: 359 NTVVQ-TTGDSWHIPY----DEDTVERYTYEVPTKWLCLHR 394
>gi|198467669|ref|XP_001354471.2| GA14011 [Drosophila pseudoobscura pseudoobscura]
gi|198149353|gb|EAL31524.2| GA14011 [Drosophila pseudoobscura pseudoobscura]
Length = 530
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 111/254 (43%), Gaps = 29/254 (11%)
Query: 544 VSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQK--------F 595
V+ + +G C+ C + L + + E + +E + R FQK F
Sbjct: 282 VTASRLGPLGKCQECRQHLQPVAISDEEFRQLSECFLEKVLIR--GDVFQKSTPEEVLRF 339
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITG 655
+++++ P++ V+D NV + P ++ ++ + + F + ++VL G
Sbjct: 340 KQYVEKTAPYDCVIDGLNVAYSTGAKKAPQQLAKLLATVVRHFKERHKRVLVL------G 393
Query: 656 HKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQL 713
+ + +++ + +N +L+ T S+DD + LYA I+ + + D MR H F L
Sbjct: 394 REHMRKWSKSAMHYVQNNASLFLTNNLSHDDPFLLYATIRSGQETDFFSRDLMRTHAF-L 452
Query: 714 LGNDF---FPRWKERHQVRFSFSDAGPEFYMPPPC--SVVIQESEKGNWHIPIA-----S 763
LG + F RW++ HQ + + P + + ++E G+WH+P +
Sbjct: 453 LGAELKPIFRRWQQEHQFSLVTQTQTGKIIVKEPIRHRLSVHQAEGGSWHVPYCDVYTPN 512
Query: 764 KQDYDDEERRWLCV 777
D D WLC+
Sbjct: 513 PTDSFDVPEHWLCL 526
>gi|291403736|ref|XP_002717992.1| PREDICTED: hypothetical protein [Oryctolagus cuniculus]
Length = 587
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 85/392 (21%), Positives = 148/392 (37%), Gaps = 61/392 (15%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A +++ +K + I P ++Y + + DV A ++ + +L+ GV P L+A
Sbjct: 230 ALLLLENIKKVMI-PSKKNYNDCIQGALLHQDVTTAWNLYQELLDQGVSPMLETLQAFFD 288
Query: 466 VSVEAGK---GDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKD 522
+ ++ +L LR + S A I WF S
Sbjct: 289 FGKDVKDDHYSKKLLDILLYLRNNQLYPGESFAHSIKTWFESVP---------------- 332
Query: 523 TMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASI 582
G W G TT+ C CG+ + I L P E E +
Sbjct: 333 -----GKQWKG-----------QFTTIQESGQCLGCGKAMESIHLSPDEYEFLKTKIMRD 376
Query: 583 AI------KRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQ 636
I ++ Q+F+ ++ PF+ V+D NV + F AR + V+ G+
Sbjct: 377 VIDGGDQYRKTTPQELQRFENFVKSRPPFDIVIDGLNVA----KMFPKARESQVLLGVVS 432
Query: 637 KFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF 696
+ + L+VL + + + + +EK + + + S DD + LYA +
Sbjct: 433 QLAKQNLRLLVLGRKHMLTQRSRWTKDE--MEKIRKQASCFFADDISEDDPFLLYATLHS 490
Query: 697 --KCLLVTNDEMRDHTFQLL---GNDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVI 749
C +T D MRDH L F +W++ HQ+ F + F V+
Sbjct: 491 GNHCKFITKDLMRDHKACLPDAKTQRLFFKWQQGHQLAIMNRFPASKITFQRILSYDTVV 550
Query: 750 QESEKGNWHIP----IASKQDYDDEERRWLCV 777
Q + +WHIP + + Y + +WLC+
Sbjct: 551 Q-TTGDSWHIPYDEDLVKRYSY-EVPTKWLCL 580
>gi|355693219|gb|EHH27822.1| hypothetical protein EGK_18112 [Macaca mulatta]
Length = 581
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 144/383 (37%), Gaps = 66/383 (17%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGD 474
I P ++Y + + D++ A ++ + +L H P L+A + +
Sbjct: 238 ITPSKKNYNDCIQGALLHQDINTAWNLYQELLGHDFVPMLETLKAFFDFGKDIKDDNYSN 297
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
++ +L LR + S A I WF S + K+W
Sbjct: 298 KLLDILSYLRNNQLYPGESFAHSIKTWFES-----VPGKQW------------------- 333
Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
KG++ TTV C CG+ + I L P E E + I K+
Sbjct: 334 ----KGQF----TTVQKSGQCLGCGKTIESIQLSPEEYEFLKGRIMRDVIDGGDQYKKTT 385
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
++F+ ++ PF+ V+D NV + F AR + V+ + + + L+VL
Sbjct: 386 PQELKRFENFVKSCPPFDIVIDGLNVA----KMFPKARESQVLLNVVSQLAKQNLRLLVL 441
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEM 706
+ + Q + E K A +A S DD + LYA + C +T D M
Sbjct: 442 GRKHMLRQSF-QWRKDEMAEVQKQASCFFADNI-SKDDPFLLYATLHSGNHCRFITKDLM 499
Query: 707 RDHTFQLLGND---FFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPI 761
RDH L F +W++ HQ+ F + F V+Q + +WHIP
Sbjct: 500 RDHKACLPDTKTQRLFFKWQQGHQLAIINGFPGSKLTFQHILSYDTVVQ-TTGDSWHIPY 558
Query: 762 ASKQDYDDEER-------RWLCV 777
D D ER +WLC+
Sbjct: 559 ----DEDVVERYSYEVPTKWLCL 577
>gi|380818312|gb|AFE81030.1| mitochondrial ribonuclease P protein 3 precursor [Macaca mulatta]
Length = 581
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 144/383 (37%), Gaps = 66/383 (17%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGD 474
I P ++Y + + D++ A ++ + +L H P L+A + +
Sbjct: 238 ITPSKKNYNDCIQGALLHQDINTAWNLYQELLGHDFVPMLETLKAFFDFGKDIKDDNYSN 297
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
++ +L LR + S A I WF S + K+W
Sbjct: 298 KLLDILSYLRNNQLYPGESFAHSIKTWFES-----VPGKQW------------------- 333
Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
KG++ TTV C CG+ + I L P E E + I K+
Sbjct: 334 ----KGQF----TTVQKSGQCLGCGKTIESIQLSPEEYEFLKGRIMRDVIDGGDQYKKTT 385
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
++F+ ++ PF+ V+D NV + F AR + V+ + + + L+VL
Sbjct: 386 PQELKRFENFVKSCPPFDIVIDGLNVA----KMFPKARESQVLLNVVSQLAKQNLRLLVL 441
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEM 706
+ + Q + E K A +A S DD + LYA + C +T D M
Sbjct: 442 GRKHMLRQSF-QWRKDEMAEVQKQASCFFADNI-SKDDPFLLYATLHSGNHCRFITKDLM 499
Query: 707 RDHTFQLLGND---FFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPI 761
RDH L F +W++ HQ+ F + F V+Q + +WHIP
Sbjct: 500 RDHKACLPDTKTQRLFFKWQQGHQLAIINGFPGSKLTFQHILSYDTVVQ-TTGDSWHIPY 558
Query: 762 ASKQDYDDEER-------RWLCV 777
D D ER +WLC+
Sbjct: 559 ----DEDVVERYSYEVPTKWLCL 577
>gi|194377976|dbj|BAG63351.1| unnamed protein product [Homo sapiens]
Length = 488
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 86/383 (22%), Positives = 141/383 (36%), Gaps = 66/383 (17%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGD 474
I P ++Y + + DV+ A ++ + +L H + P L+A + +
Sbjct: 145 ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSN 204
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
++ +L LR + + S A I WF S G W G
Sbjct: 205 KLLDILSYLRNNQLYLGESFAHSIKTWFESV---------------------PGKQWKG- 242
Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
TTV C CG+ + I L P E E + I ++
Sbjct: 243 ----------QFTTVRKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTT 292
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
++F+ ++ PF+ V+D NV + F R + ++ + + + L+VL
Sbjct: 293 PQELKRFENFIKSRPPFDVVIDGLNVA----KMFPKVRESQLLLNVVSQLAKRNLRLLVL 348
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEM 706
R+ + Q + E K A +A S DD + LYA + C +T D M
Sbjct: 349 -GRKHMLRRSSQWSRDEMEEVQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLM 406
Query: 707 RDHTFQLL---GNDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPI 761
RDH L F +W++ HQ+ F + F V+Q + +WHIP
Sbjct: 407 RDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQ-TTGDSWHIPY 465
Query: 762 ASKQDYDDEER-------RWLCV 777
D D ER +WLC+
Sbjct: 466 ----DEDLVERCSCEVPTKWLCL 484
>gi|332229154|ref|XP_003263756.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 1
[Nomascus leucogenys]
Length = 583
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 87/383 (22%), Positives = 140/383 (36%), Gaps = 66/383 (17%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGD 474
+ P ++Y + + DV+ A ++ + +L H + P L+A + +
Sbjct: 240 MTPSKKNYNDCIRGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSN 299
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
++ +L LR + S A I WF S G W G
Sbjct: 300 KLLDILSYLRNNQLYPGESFAHSIKTWFESVP---------------------GKQWKG- 337
Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
TTV C CG+ + I L P E E + I K+
Sbjct: 338 ----------QFTTVQKSGQCSACGKTIESIQLSPEEYEYLKGKIMRDVIDGGDQYKKTT 387
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
++F+ ++ PF+ V+D NV + F AR + + + + + L+VL
Sbjct: 388 PQELKRFENFIKSCPPFDIVIDGLNVA----KMFPKARESQFLLNVVSQLAKQNLRLLVL 443
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEM 706
R+ + Q + E K A +A S DD + LYA + C +T D M
Sbjct: 444 -GRKHMLRQCSQWRKDEMKEVQKQASCFFADNI-SEDDPFLLYATLHSGNHCRFITKDLM 501
Query: 707 RDHTFQLL---GNDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPI 761
RDH L F +W++ HQ+ F + F V+Q + +WHIP
Sbjct: 502 RDHKACLPDAKTQRLFFKWQQGHQLAIINRFPGSKLTFQHILSYDTVVQ-TTGDSWHIPY 560
Query: 762 ASKQDYDDEER-------RWLCV 777
D D ER +WLC+
Sbjct: 561 ----DEDLVERYSYEVPTKWLCL 579
>gi|355778520|gb|EHH63556.1| hypothetical protein EGM_16548 [Macaca fascicularis]
Length = 581
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 144/383 (37%), Gaps = 66/383 (17%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGD 474
I P ++Y + + D++ A ++ + +L H P L+A + +
Sbjct: 238 ITPSKKNYNDCIQGALLHQDINTAWNLYQELLGHDFVPMLETLKAFFDFGKDIKDDNYSN 297
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
++ +L LR + S A I WF S + K+W
Sbjct: 298 KLLDILSYLRNNQLYPGESFAHSIKTWFES-----VPGKQW------------------- 333
Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
KG++ TTV C CG+ + I L P E E + I K+
Sbjct: 334 ----KGQF----TTVQKSGQCLGCGKTIESIQLSPEEYEFLKGRIMRDVIDGGDQYKKTT 385
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
++F+ ++ PF+ V+D NV + F AR + V+ + + + L+VL
Sbjct: 386 PQELKRFENFVKSCPPFDIVIDGLNVA----KMFPKARESQVLLNVVSQLAKQNLRLLVL 441
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEM 706
+ + Q + E K A +A S DD + LYA + C +T D M
Sbjct: 442 GRKHMLRQSF-QWRKDEMAEVQKQASCFFADNI-SKDDPFLLYATLHSGNHCRFITKDLM 499
Query: 707 RDHTFQLL---GNDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPI 761
RDH L F +W++ HQ+ F + F V+Q + +WHIP
Sbjct: 500 RDHKACLPDAKTQRLFFKWQQGHQLAIINGFPGSKLTFQHILSYDTVVQ-TTGDSWHIPY 558
Query: 762 ASKQDYDDEER-------RWLCV 777
D D ER +WLC+
Sbjct: 559 ----DEDVVERYSYEVPTKWLCL 577
>gi|109083314|ref|XP_001085149.1| PREDICTED: mitochondrial ribonuclease P protein 3-like isoform 4
[Macaca mulatta]
Length = 581
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 144/383 (37%), Gaps = 66/383 (17%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGD 474
I P ++Y + + D++ A ++ + +L H P L+A + +
Sbjct: 238 ITPSKKNYNDCIQGALLHQDINTAWNLYQELLGHDFVPMLETLKAFFDFGKDIKDDNYSN 297
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
++ +L LR + S A I WF S + K+W
Sbjct: 298 KLLDILSYLRNNQLYPGESFAHSIKTWFES-----VPGKQW------------------- 333
Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
KG++ TTV C CG+ + I L P E E + I K+
Sbjct: 334 ----KGQF----TTVQKSGQCLGCGKTIESIQLSPEEYEFLKGRIMRDVIDGGDQYKKTT 385
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
++F+ ++ PF+ V+D NV + F AR + V+ + + + L+VL
Sbjct: 386 PQELKRFENFVKSCPPFDIVIDGLNVA----KMFPKARESQVLLNVVSQLAKQNLRLLVL 441
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEM 706
+ + Q + E K A +A S DD + LYA + C +T D M
Sbjct: 442 GRKHMLRQSF-QWRKDEMAEVQKQASCFFADNI-SKDDPFLLYATLHSGNHCRFITKDLM 499
Query: 707 RDHTFQLL---GNDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPI 761
RDH L F +W++ HQ+ F + F V+Q + +WHIP
Sbjct: 500 RDHKACLPDAKTQRLFFKWQQGHQLAIINGFPGSKLTFQHILSYDTVVQ-TTGDSWHIPY 558
Query: 762 ASKQDYDDEER-------RWLCV 777
D D ER +WLC+
Sbjct: 559 ----DEDVVERYSYEVPTKWLCL 577
>gi|57090505|ref|XP_547772.1| PREDICTED: mitochondrial ribonuclease P protein 3 [Canis lupus
familiaris]
Length = 581
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 106/261 (40%), Gaps = 37/261 (14%)
Query: 542 WIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKF 595
W TTV C CG+ + I L E E + I K+ ++F
Sbjct: 333 WKGQFTTVKESGQCLGCGKTIESIHLSSEEYESLKGKIMKDVIDGGDLYKKTTPQELERF 392
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRR-IT 654
Q ++ PF+ V+D NV + F AR + V+ + + + L+VL + +T
Sbjct: 393 QNFVKCCPPFDIVIDGLNVA----KTFPKARESQVLLDVVSQLAKQNLELLVLGRKHMLT 448
Query: 655 GHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQ 712
H + +++ K A +A S DD + LYA + C +T D MRDH
Sbjct: 449 QHSRWRKDEMKMVQ--KQASCFFADNI-SEDDPFLLYATLHSGNHCKFITKDLMRDHKAC 505
Query: 713 LLG---NDFFPRWKERHQVRFSFSDAGPE--FYMPPPCSVVIQESEKGNWHIPIASKQDY 767
L F +W+ HQ+ G + F P V+Q + +WHIP Y
Sbjct: 506 LHNAKTQHLFFKWQRGHQLAILNRLPGSKIIFQNIPSYDTVVQ-TTGDSWHIP------Y 558
Query: 768 DDE--ER-------RWLCVTR 779
DD+ ER +WLC+ R
Sbjct: 559 DDDMVERYSYEVPTKWLCLHR 579
>gi|26327069|dbj|BAC27278.1| unnamed protein product [Mus musculus]
Length = 584
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 86/383 (22%), Positives = 146/383 (38%), Gaps = 66/383 (17%)
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK---GDRV 476
P ++YG + + DV+ A ++ + ++ H + P L+A + D++
Sbjct: 239 PSKKNYGDCIQGALLHQDVNTAWNLYQELIGHNLIPPLETLKAFFDYGKDINDDHYSDKL 298
Query: 477 YYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGW 536
+L LR + S A I WF S + ++W
Sbjct: 299 LDILLYLRNNQLYPGESFAHSIKTWFES-----IPGRQW--------------------- 332
Query: 537 LGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNS 590
KG++ TT+ C CG + I L P E E E + I K+
Sbjct: 333 --KGQF----TTIQKSGQCSGCGRTIEPIHLSPEEYEFLKEKIMRDVIDGGDQYKKTTPQ 386
Query: 591 SFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHN 650
++F+ +++ PF+ V+D NV + F R + + G+ + + L+VL
Sbjct: 387 ELKRFESFVNSCPPFDIVIDGLNVA----KMFPKGRESQNLLGVVSQVAQQNLQLLVL-G 441
Query: 651 RRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRD 708
R+ Q + + K A +A S DD + LYA + C +T D +RD
Sbjct: 442 RKHMLRPSSQWRKEEMEQVRKQAHCFFADNI-SEDDPFLLYATLNSGNHCKFITKDLLRD 500
Query: 709 HTFQL---LGNDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIAS 763
H L F +W++ HQ+ F + F V+Q + +WHIP
Sbjct: 501 HKACLPDARTQRLFFKWQQGHQLAIMKGFQKSKLTFQHILSYDTVVQRT-GDSWHIPY-- 557
Query: 764 KQDYDDEER-------RWLCVTR 779
D D +R +WLC+ R
Sbjct: 558 --DEDLVQRSSCEVPTKWLCLQR 578
>gi|426248384|ref|XP_004017943.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 2 [Ovis
aries]
Length = 568
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 99/246 (40%), Gaps = 33/246 (13%)
Query: 555 CKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLDYYGPFEAV 608
C CG+ + I L E E E + I K+ ++FQ ++ Y PF+ V
Sbjct: 333 CLGCGKTVESIHLSSEEYEFLKEKIMRDVIDGGDQYKKTTPQELKRFQNFVKYCPPFDVV 392
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
+D NV + F AR + V+ + + ++VL + + + R +E
Sbjct: 393 IDGLNVA----KMFPKARESQVLLNVVSHLAKQNLQVLVLGRKHMLTQ--NSRWRRVEME 446
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQL---LGNDFFPRWK 723
K + + + S DD + LYA + C +T D MRDH L F +W+
Sbjct: 447 KMQKQASFFFADNISEDDPFLLYATLHSGNHCKFITKDLMRDHRACLPDAKTQRLFFKWQ 506
Query: 724 ERHQVRFSFSDAGPEFYMPPPCSV-VIQESEKGNWHIPIASKQDYDDE--ER-------R 773
+ HQ+ G + S + ++ +WHIP YDD ER +
Sbjct: 507 QGHQLAIVSKHPGAKITFQHILSYDTVVQTTGDSWHIP------YDDNLVERYSYEVPTK 560
Query: 774 WLCVTR 779
WLC+ R
Sbjct: 561 WLCLHR 566
>gi|410212502|gb|JAA03470.1| KIAA0391 [Pan troglodytes]
gi|410252808|gb|JAA14371.1| KIAA0391 [Pan troglodytes]
gi|410301992|gb|JAA29596.1| KIAA0391 [Pan troglodytes]
gi|410334691|gb|JAA36292.1| KIAA0391 [Pan troglodytes]
Length = 583
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/382 (21%), Positives = 139/382 (36%), Gaps = 64/382 (16%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGD 474
I P ++Y + + DV+ A ++ + +L H + P L+A + +
Sbjct: 240 ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSN 299
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
++ +L LR + S A I WF S G W G
Sbjct: 300 KLLDILSYLRNNQLYPGESFAHSIKTWFESVP---------------------GKQWKG- 337
Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
TTV C CG+ + I L P E E + I ++
Sbjct: 338 ----------QFTTVRKSGQCSACGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTT 387
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
++F+ ++ PF+ V+D NV + F R + ++ + + + L+VL
Sbjct: 388 PQELKRFENFIKSRPPFDVVIDGLNVA----KMFPKVRESQLLLNVVSQLAKQNLRLLVL 443
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEM 706
R+ + Q + E K A +A S DD + LYA + C +T D M
Sbjct: 444 -GRKHMLRRSSQWSRDEMEEVQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLM 501
Query: 707 RDHTFQLL---GNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSV-VIQESEKGNWHIPIA 762
RDH L F +W++ HQ+ G + S + ++ +WHIP
Sbjct: 502 RDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTTGDSWHIPY- 560
Query: 763 SKQDYDDEER-------RWLCV 777
D D ER +WLC+
Sbjct: 561 ---DEDLVERCSYEVPTKWLCL 579
>gi|332842138|ref|XP_001138582.2| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 3 [Pan
troglodytes]
Length = 488
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/383 (22%), Positives = 140/383 (36%), Gaps = 66/383 (17%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGD 474
I P ++Y + + DV+ A ++ + +L H + P L+A + +
Sbjct: 145 ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSN 204
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
++ +L LR + S A I WF S G W G
Sbjct: 205 KLLDILSYLRNNQLYPGESFAHSIKTWFESV---------------------PGKQWKG- 242
Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
TTV C CG+ + I L P E E + I ++
Sbjct: 243 ----------QFTTVRKSGQCSACGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTT 292
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
++F+ ++ PF+ V+D NV + F R + ++ + + + L+VL
Sbjct: 293 PQELKRFENFIKSRPPFDVVIDGLNVA----KMFPKVRESQLLLNVVSQLAKQNLRLLVL 348
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEM 706
R+ + Q + E K A +A S DD + LYA + C +T D M
Sbjct: 349 -GRKHMLRRSSQWSRDEMEEVQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLM 406
Query: 707 RDHTFQLL---GNDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPI 761
RDH L F +W++ HQ+ F + F V+Q + +WHIP
Sbjct: 407 RDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQ-TTGDSWHIPY 465
Query: 762 ASKQDYDDEER-------RWLCV 777
D D ER +WLC+
Sbjct: 466 ----DEDLVERCSYEVPTKWLCL 484
>gi|426376677|ref|XP_004055120.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 1
[Gorilla gorilla gorilla]
Length = 583
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 85/382 (22%), Positives = 144/382 (37%), Gaps = 64/382 (16%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGD 474
I P ++Y + + DV+ A ++ + +L H + P L+A + +
Sbjct: 240 ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSN 299
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
++ +L LR + S A I WF S + K+W
Sbjct: 300 KLLDILSYLRNNQLYPGESFAHSIKTWFES-----VPGKQW------------------- 335
Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
KG++ TTV C CG+ + I L P E E + I ++
Sbjct: 336 ----KGQF----TTVRKSGRCSGCGKTIESIQLSPEEYECLKGKIMKDVIEGGDQYRKTT 387
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
++F+ ++ PF+ V+D NV + F R + ++ + + + L+VL
Sbjct: 388 PQELKRFENFIKSRPPFDVVIDGLNVA----KMFPKVRESQLLLNVVSQLAKRNLRLLVL 443
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEM 706
R+ + Q + E K A +A S DD + LYA + C +T D M
Sbjct: 444 -GRKHMLRRSSQWSRDEMEEVQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLM 501
Query: 707 RDHTFQLL---GNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSV-VIQESEKGNWHIPIA 762
RDH L F +W++ HQ+ G + S + ++ +WHIP
Sbjct: 502 RDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQHILSYDTVVQTTGDSWHIPY- 560
Query: 763 SKQDYDDEER-------RWLCV 777
D D ER +WLC+
Sbjct: 561 ---DEDLVERCSYEVPTKWLCL 579
>gi|27882031|gb|AAH44580.1| KIAA0391 [Homo sapiens]
Length = 583
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 85/382 (22%), Positives = 144/382 (37%), Gaps = 64/382 (16%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGD 474
I P ++Y + + DV+ A ++ + +L H + P L+A + +
Sbjct: 240 ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSN 299
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
++ +L LR + S A I WF S + K+W
Sbjct: 300 KLLDILSYLRNNQLYPGESFAHSIKTWFES-----VPGKQW------------------- 335
Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
KG++ TTV C CG+ + I L P E E + I ++
Sbjct: 336 ----KGQF----TTVRKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTT 387
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
++F+ ++ PF+ V+D NV + F R + ++ + + + L+VL
Sbjct: 388 PQELKRFENFIKSRPPFDVVIDGLNVA----KMFPKVRESQLLLNVVSQLAKRSLRLLVL 443
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEM 706
R+ + Q + E K A +A S DD + LYA + C +T D M
Sbjct: 444 -GRKHMLRRSSQWSRDEMEEVQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLM 501
Query: 707 RDHTFQLL---GNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSV-VIQESEKGNWHIPIA 762
RDH L F +W++ HQ+ G + S + ++ +WHIP
Sbjct: 502 RDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTTGDSWHIPY- 560
Query: 763 SKQDYDDEER-------RWLCV 777
D D ER +WLC+
Sbjct: 561 ---DEDLVERCSCEVPTKWLCL 579
>gi|449274768|gb|EMC83846.1| Mitochondrial ribonuclease P protein 3, partial [Columba livia]
Length = 477
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 89/406 (21%), Positives = 157/406 (38%), Gaps = 73/406 (17%)
Query: 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
MA +++ +K L I P SY + + +++ A + ML + P L+
Sbjct: 113 MALTLLEEVKQLMI-PSRGSYESCIKAASRHQEMNLAFQLYCEMLAEDLVPTLDVLQGFF 171
Query: 465 RVSVEAGKG----DRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLI 520
S KG ++++ +L LR + ++ P + W K W ES+
Sbjct: 172 DFS-RGMKGAELQNQLFGILLYLREN--QIYPHKTFI---W---------SIKLWFESI- 215
Query: 521 KDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVA 580
GG W G T + C C +L +L E + E +
Sbjct: 216 ------PGGNWRG-----------HLTNIKDSGQCPVCNHQLEDSNLTEEEYKCLRERII 258
Query: 581 SIAI------KRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGI 634
I ++ F+ FQ +++ PF+ V+D NV R + + VN +
Sbjct: 259 KDVIHGTDTFRKTSPQEFEAFQTFVENRLPFDIVIDGLNVSHIKPRKMQCENLFEAVNCL 318
Query: 635 RQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAI 694
+ L+VL + + + + R ++++ +N + S DD + LYA +
Sbjct: 319 AKGNAR----LLVLGRKHMLSNSPNW--KREVMKEMQNKADFFFAENISEDDTFLLYATL 372
Query: 695 KF--KCLLVTNDEMRDHTFQL---LGNDFFPRWKERHQVRFSFSDAGPEF-YMPPPCSVV 748
+ C VT D +RDH L + F +W+ HQ+ S S G ++ SV
Sbjct: 373 RSGKHCKFVTRDFLRDHKACLSDSVTRHLFRKWQRGHQIVISSSGEGKRLKFLEMVLSVF 432
Query: 749 IQ----------ESEKGNWHIPIASKQDYDDE-----ERRWLCVTR 779
IQ ++ WHIP K +D++ R+WLC+ +
Sbjct: 433 IQQPALRYDCVVQTTGDTWHIPY--KDTFDEKYSYEVPRKWLCIQQ 476
>gi|62988276|ref|NP_055487.2| mitochondrial ribonuclease P protein 3 isoform 1 precursor [Homo
sapiens]
gi|221222466|sp|O15091.2|MRRP3_HUMAN RecName: Full=Mitochondrial ribonuclease P protein 3;
Short=Mitochondrial RNase P protein 3; Flags: Precursor
gi|21595091|gb|AAH32221.1| KIAA0391 [Homo sapiens]
gi|28071000|emb|CAD61881.1| unnamed protein product [Homo sapiens]
gi|119586282|gb|EAW65878.1| KIAA0391, isoform CRA_a [Homo sapiens]
gi|119586284|gb|EAW65880.1| KIAA0391, isoform CRA_a [Homo sapiens]
gi|119586288|gb|EAW65884.1| KIAA0391, isoform CRA_a [Homo sapiens]
Length = 583
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 85/382 (22%), Positives = 144/382 (37%), Gaps = 64/382 (16%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGD 474
I P ++Y + + DV+ A ++ + +L H + P L+A + +
Sbjct: 240 ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSN 299
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
++ +L LR + S A I WF S + K+W
Sbjct: 300 KLLDILSYLRNNQLYPGESFAHSIKTWFES-----VPGKQW------------------- 335
Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
KG++ TTV C CG+ + I L P E E + I ++
Sbjct: 336 ----KGQF----TTVRKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTT 387
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
++F+ ++ PF+ V+D NV + F R + ++ + + + L+VL
Sbjct: 388 PQELKRFENFIKSRPPFDVVIDGLNVA----KMFPKVRESQLLLNVVSQLAKRNLRLLVL 443
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEM 706
R+ + Q + E K A +A S DD + LYA + C +T D M
Sbjct: 444 -GRKHMLRRSSQWSRDEMEEVQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLM 501
Query: 707 RDHTFQLL---GNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSV-VIQESEKGNWHIPIA 762
RDH L F +W++ HQ+ G + S + ++ +WHIP
Sbjct: 502 RDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTTGDSWHIPY- 560
Query: 763 SKQDYDDEER-------RWLCV 777
D D ER +WLC+
Sbjct: 561 ---DEDLVERCSCEVPTKWLCL 579
>gi|294899883|ref|XP_002776791.1| multidrug resistance pump, putative [Perkinsus marinus ATCC 50983]
gi|239883992|gb|EER08607.1| multidrug resistance pump, putative [Perkinsus marinus ATCC 50983]
Length = 576
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 23/123 (18%)
Query: 676 LYATPTGSNDDWYWLYAAIKF----------------KCLLVTNDEMRDHTFQLLGNDFF 719
LY P +NDDW+W+YAAI+ K +++ND MRDH ++++ F
Sbjct: 450 LYRVPPRANDDWFWMYAAIRCEEQARALAKNENRTADKVFVISNDLMRDHFWRMMVPQSF 509
Query: 720 PRWKERH--QVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASK-QDYDDE-ERRWL 775
RW+ERH +VR +F + + CSV ES G+ +PI +D E E +WL
Sbjct: 510 LRWRERHVCRVRITFPEENVDKKEYVFCSVT--ESASGD-RVPITRPVEDQQPETETKWL 566
Query: 776 CVT 778
V
Sbjct: 567 AVV 569
>gi|441595333|ref|XP_004087233.1| PREDICTED: mitochondrial ribonuclease P protein 3 [Nomascus
leucogenys]
Length = 436
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 87/383 (22%), Positives = 140/383 (36%), Gaps = 66/383 (17%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGD 474
+ P ++Y + + DV+ A ++ + +L H + P L+A + +
Sbjct: 93 MTPSKKNYNDCIRGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSN 152
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
++ +L LR + S A I WF S G W G
Sbjct: 153 KLLDILSYLRNNQLYPGESFAHSIKTWFESVP---------------------GKQWKG- 190
Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
TTV C CG+ + I L P E E + I K+
Sbjct: 191 ----------QFTTVQKSGQCSACGKTIESIQLSPEEYEYLKGKIMRDVIDGGDQYKKTT 240
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
++F+ ++ PF+ V+D NV + F AR + + + + + L+VL
Sbjct: 241 PQELKRFENFIKSCPPFDIVIDGLNVA----KMFPKARESQFLLNVVSQLAKQNLRLLVL 296
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEM 706
R+ + Q + E K A +A S DD + LYA + C +T D M
Sbjct: 297 -GRKHMLRQCSQWRKDEMKEVQKQASCFFADNI-SEDDPFLLYATLHSGNHCRFITKDLM 354
Query: 707 RDHTFQLL---GNDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPI 761
RDH L F +W++ HQ+ F + F V+Q + +WHIP
Sbjct: 355 RDHKACLPDAKTQRLFFKWQQGHQLAIINRFPGSKLTFQHILSYDTVVQ-TTGDSWHIPY 413
Query: 762 ASKQDYDDEER-------RWLCV 777
D D ER +WLC+
Sbjct: 414 ----DEDLVERYSYEVPTKWLCL 432
>gi|426376679|ref|XP_004055121.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 2
[Gorilla gorilla gorilla]
Length = 488
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 84/382 (21%), Positives = 139/382 (36%), Gaps = 64/382 (16%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGD 474
I P ++Y + + DV+ A ++ + +L H + P L+A + +
Sbjct: 145 ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSN 204
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
++ +L LR + S A I WF S G W G
Sbjct: 205 KLLDILSYLRNNQLYPGESFAHSIKTWFESV---------------------PGKQWKG- 242
Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
TTV C CG+ + I L P E E + I ++
Sbjct: 243 ----------QFTTVRKSGRCSGCGKTIESIQLSPEEYECLKGKIMKDVIEGGDQYRKTT 292
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
++F+ ++ PF+ V+D NV + F R + ++ + + + L+VL
Sbjct: 293 PQELKRFENFIKSRPPFDVVIDGLNVA----KMFPKVRESQLLLNVVSQLAKRNLRLLVL 348
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEM 706
R+ + Q + E K A +A S DD + LYA + C +T D M
Sbjct: 349 -GRKHMLRRSSQWSRDEMEEVQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLM 406
Query: 707 RDHTFQLL---GNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSV-VIQESEKGNWHIPIA 762
RDH L F +W++ HQ+ G + S + ++ +WHIP
Sbjct: 407 RDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQHILSYDTVVQTTGDSWHIPY- 465
Query: 763 SKQDYDDEER-------RWLCV 777
D D ER +WLC+
Sbjct: 466 ---DEDLVERCSYEVPTKWLCL 484
>gi|375493516|ref|NP_001243608.1| mitochondrial ribonuclease P protein 3 isoform 3 [Homo sapiens]
Length = 488
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 86/383 (22%), Positives = 140/383 (36%), Gaps = 66/383 (17%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGD 474
I P ++Y + + DV+ A ++ + +L H + P L+A + +
Sbjct: 145 ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSN 204
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
++ +L LR + S A I WF S G W G
Sbjct: 205 KLLDILSYLRNNQLYPGESFAHSIKTWFESV---------------------PGKQWKG- 242
Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
TTV C CG+ + I L P E E + I ++
Sbjct: 243 ----------QFTTVRKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTT 292
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
++F+ ++ PF+ V+D NV + F R + ++ + + + L+VL
Sbjct: 293 PQELKRFENFIKSRPPFDVVIDGLNVA----KMFPKVRESQLLLNVVSQLAKRNLRLLVL 348
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEM 706
R+ + Q + E K A +A S DD + LYA + C +T D M
Sbjct: 349 -GRKHMLRRSSQWSRDEMEEVQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLM 406
Query: 707 RDHTFQLL---GNDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPI 761
RDH L F +W++ HQ+ F + F V+Q + +WHIP
Sbjct: 407 RDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQ-TTGDSWHIPY 465
Query: 762 ASKQDYDDEER-------RWLCV 777
D D ER +WLC+
Sbjct: 466 ----DEDLVERCSCEVPTKWLCL 484
>gi|395504265|ref|XP_003756476.1| PREDICTED: mitochondrial ribonuclease P protein 3 [Sarcophilus
harrisii]
Length = 580
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 80/383 (20%), Positives = 147/383 (38%), Gaps = 58/383 (15%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD--- 474
++P R+YG + + +++ A ++ ML H + P +A + +
Sbjct: 237 MSPSKRNYGDCIKGALLHREMNLAWNLYFEMLNHRIIPNWETFQAFFDFAKGVKNNEFER 296
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
R+ +L LR + + A I WF S + +KKW
Sbjct: 297 RLLDILLYLRNNQMYPNEPFAQSIKIWFES-----IPEKKW------------------- 332
Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
KG+ ++ H + C CG L I L+ E E + V + ++
Sbjct: 333 ----KGESVIIHKS----GQCLACGRMLESIHLNSEEYEFLKQRVLKDILDGGDQYRKTT 384
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
+F+K++ PF+ V+D NV + F R + + I + + + ++VL
Sbjct: 385 PKEINRFEKFIKSCPPFDIVIDGLNVT----KMFPKIRESETLLDIVSQLTKQNFQVLVL 440
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEM 706
+ + + N + +N + S DD + LYA + +C +T D M
Sbjct: 441 GRKHMLNGRSRWHKNE--MTAVQNMAYCFFADNVSEDDAFLLYATLHSGNQCRFLTRDLM 498
Query: 707 RDHTFQLL---GNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSV-VIQESEKGNWHIP-- 760
RDH L F RW++ HQ+ F G + + + ++ +WHIP
Sbjct: 499 RDHKACLTDEKTQQLFFRWQQGHQLVFLNYYPGKKIIFQSVLTYNTVVQTTGDSWHIPYD 558
Query: 761 --IASKQDYDDEERRWLCVTRAN 781
I + Y + +WLC+ + N
Sbjct: 559 ENIVERYSY-EVPTKWLCLQQQN 580
>gi|224009498|ref|XP_002293707.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970379|gb|EED88716.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 992
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 99/234 (42%), Gaps = 57/234 (24%)
Query: 553 ALCKCCGEKLAIIDLDPIETEKFAE--------SVASIAIKRERNSS------FQKFQKW 598
+C + +I L+P + ++ + +A+ A K+E S+ Q F W
Sbjct: 636 GICPVTKSQQRLIVLEPDQRKQLHDDLLELSKVQLANFAGKKEGESTERAAEQLQIFSNW 695
Query: 599 LDYYG--PFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR- 651
L+ PF A+VD AN+G + Q F ++ + + + + + PL+V+ N+
Sbjct: 696 LNTREGEPFTAIVDGANIGYFMQSFDKGRFNYHQIKFMCDTLEARGEN---PLVVIPNKY 752
Query: 652 --------RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIK-------- 695
+ K+D PV +++ ++ LY P DD YW+ +++
Sbjct: 753 GYNEFYSSKKEYQKLD-PVEIKIMKDLRSQGKLYQVPPRCLDDLYWMLSSVSDQTVSRGG 811
Query: 696 ----------------FKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFS 733
+ +LV+ND+MRDH +LL F RW H V ++F+
Sbjct: 812 RDLSVPSNDPSGRWPGTRPMLVSNDQMRDHKLELLEPRLFRRWYGCHMVNYNFT 865
>gi|402875947|ref|XP_003901752.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 1 [Papio
anubis]
Length = 581
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 87/383 (22%), Positives = 143/383 (37%), Gaps = 66/383 (17%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGD 474
I P ++Y + + D++ A ++ + +L + P L+A + +
Sbjct: 238 ITPSKKNYNDCIQGALLHQDINTAWNLYQELLGQDIVPMLETLKAFFDFGKDIKDDNYSN 297
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
++ +L LR + S A I WF S + K+W
Sbjct: 298 KLLDILSYLRNNQLYPGESFAHSIKTWFES-----VPGKQW------------------- 333
Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
KG++ TTV C CG+ + I L P E E + I K
Sbjct: 334 ----KGQF----TTVQKSGQCLGCGKTIESIQLSPEEYEFLKGRIMRDVIDGGDQYKNTT 385
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
++F+ ++ PF+ V+D NV + F AR + V+ + + + L+VL
Sbjct: 386 PQELKRFENFIKSCPPFDIVIDGLNVA----KMFPKARESQVLLNVVSQLAKQNLRLLVL 441
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEM 706
+ + Q + E K A +A S DD + LYA + C +T D M
Sbjct: 442 GRKHMLTQSF-QWRKDEMAEVQKQASCFFADNI-SKDDPFLLYATLHSGNHCRFITKDLM 499
Query: 707 RDHTFQLL---GNDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPI 761
RDH L F +W++ HQ+ F + F V+Q + +WHIP
Sbjct: 500 RDHKACLPDAKTQRLFFKWQQGHQLAIINRFPGSKLTFQHILSYDTVVQ-TTGDSWHIPY 558
Query: 762 ASKQDYDDEER-------RWLCV 777
D D ER +WLC+
Sbjct: 559 ----DEDVVERYSYEIPTKWLCL 577
>gi|195048433|ref|XP_001992525.1| GH24799 [Drosophila grimshawi]
gi|193893366|gb|EDV92232.1| GH24799 [Drosophila grimshawi]
Length = 537
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 111/245 (45%), Gaps = 32/245 (13%)
Query: 555 CKCCGEKLAIIDLDPIETEKFAES-VASIAIKRERNSSFQK--------FQKWLDYYGPF 605
C C + L + + + + ES +A + I RN FQK F+++++ P+
Sbjct: 302 CTACQQHLQHVAISDAQFAELHESFLAKVLI---RNDVFQKSTPEEVARFKQYVEQTAPY 358
Query: 606 EAVVDAANVGLYSQRNFKPARVNA-VVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNR 664
+ V+D NV YS N KP + A ++ + + F ++ ++VL G + + ++
Sbjct: 359 DCVIDGLNVA-YSTGNKKPPQQLAKLLATVVRYFKERRKRVLVL------GRQHMRNWSK 411
Query: 665 ALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLLGNDF---F 719
+ + ++ +++ T S+DD + LYA ++ + + D MR H F LLG D F
Sbjct: 412 PVWQYIQSNASVFLTNNLSHDDPFLLYATLRSGQETDFFSRDLMRSHAF-LLGGDLKAVF 470
Query: 720 PRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGN-WHIP-----IASKQDYDDEERR 773
RW++ HQ + + P + + N WH+P + D + +
Sbjct: 471 RRWQQEHQYSLVTQTQTGQIIVKEPIRHRLSAHKVNNVWHVPCCDTYMTQPPDSFEVPEK 530
Query: 774 WLCVT 778
WLC+T
Sbjct: 531 WLCLT 535
>gi|402875951|ref|XP_003901754.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 3 [Papio
anubis]
Length = 485
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 86/383 (22%), Positives = 138/383 (36%), Gaps = 66/383 (17%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGD 474
I P ++Y + + D++ A ++ + +L + P L+A + +
Sbjct: 142 ITPSKKNYNDCIQGALLHQDINTAWNLYQELLGQDIVPMLETLKAFFDFGKDIKDDNYSN 201
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
++ +L LR + S A I WF S G W G
Sbjct: 202 KLLDILSYLRNNQLYPGESFAHSIKTWFESVP---------------------GKQWKG- 239
Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
TTV C CG+ + I L P E E + I K
Sbjct: 240 ----------QFTTVQKSGQCLGCGKTIESIQLSPEEYEFLKGRIMRDVIDGGDQYKNTT 289
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
++F+ ++ PF+ V+D NV + F AR + V+ + + + L+VL
Sbjct: 290 PQELKRFENFIKSCPPFDIVIDGLNVA----KMFPKARESQVLLNVVSQLAKQNLRLLVL 345
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEM 706
+ + Q + E K A +A S DD + LYA + C +T D M
Sbjct: 346 GRKHMLTQSF-QWRKDEMAEVQKQASCFFADNI-SKDDPFLLYATLHSGNHCRFITKDLM 403
Query: 707 RDHTFQLL---GNDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPI 761
RDH L F +W++ HQ+ F + F V+Q + +WHIP
Sbjct: 404 RDHKACLPDAKTQRLFFKWQQGHQLAIINRFPGSKLTFQHILSYDTVVQ-TTGDSWHIPY 462
Query: 762 ASKQDYDDEER-------RWLCV 777
D D ER +WLC+
Sbjct: 463 ----DEDVVERYSYEIPTKWLCL 481
>gi|195130621|ref|XP_002009750.1| GI15064 [Drosophila mojavensis]
gi|193908200|gb|EDW07067.1| GI15064 [Drosophila mojavensis]
Length = 537
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 110/246 (44%), Gaps = 30/246 (12%)
Query: 555 CKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQK--------FQKWLDYYGPFE 606
C C + L + + + + ES + R N FQK F+++++ P++
Sbjct: 301 CSTCQQNLQHVAISDAQFAELRESFLQKVLIR--NDVFQKTTPQELQRFKQYVEKTAPYD 358
Query: 607 AVVDAANVGLYSQRNFK-PARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRA 665
V+D NV YS N K PA++ ++ + + F ++ ++VL + ++ ++
Sbjct: 359 CVIDGLNVA-YSTGNKKPPAQLAKLLATVVRYFKERRKRVLVLGRQHMSNW------SKP 411
Query: 666 LIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLLGNDF---FP 720
++ ++ +++ T ++DD + LYA ++ + D MR H LLG + F
Sbjct: 412 AMQYIQSNASVFLTNNLTHDDPFLLYATLRSGQDTDFFSRDLMRAHA-HLLGTELKAIFR 470
Query: 721 RWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGN-WHIP-----IASKQDYDDEERRW 774
RW++ HQ + + P + + GN WH+P A+ D + +W
Sbjct: 471 RWQQEHQYSLVTQTQTGQIIVKEPIRYRLSAHKVGNVWHVPYCEAYTANPPDSFEVPEKW 530
Query: 775 LCVTRA 780
LC+T A
Sbjct: 531 LCITIA 536
>gi|444722485|gb|ELW63177.1| Mitochondrial ribonuclease P protein 3 [Tupaia chinensis]
Length = 570
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 99/244 (40%), Gaps = 29/244 (11%)
Query: 555 CKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLDYYGPFEAV 608
C CG+ + I L P E E + I K+ Q+F+ ++ PF+ V
Sbjct: 335 CLGCGKTIESIHLSPEEYEFLKGRIMRDVIDGGDQYKKTTPQELQRFENFVKSCPPFDIV 394
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
+D NV + F AR + V++ + + + L+VL + + + N +E
Sbjct: 395 IDGLNVA----KMFPKARESEVLSNVVSQLAKQNLRLLVLGRKHMLTQRSRWRKNE--ME 448
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLL---GNDFFPRWK 723
K + + + S DD + LYA + C +T D MRDH L F +W+
Sbjct: 449 KIQKQASCFFADDISEDDPFLLYATLHSGNHCKFITKDLMRDHKACLPDAKTQRLFFKWQ 508
Query: 724 ERHQVRFSFSDAGPEFYMPPPCSV-VIQESEKGNWHIPIASKQDYDDEER-------RWL 775
+ HQ+ G + S + ++ +WHIP D D ER +WL
Sbjct: 509 QGHQLAIMNRFLGSKIVFQHILSYDTVVQTTGDSWHIPY----DEDLVERYSYEVPTKWL 564
Query: 776 CVTR 779
C+ R
Sbjct: 565 CLHR 568
>gi|219122687|ref|XP_002181672.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406948|gb|EEC46886.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 690
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 90/223 (40%), Gaps = 51/223 (22%)
Query: 585 KRERNSSFQKFQKWL-DYYG-PFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKK 642
+R R + F+ F +WL ++ G PF A+VD ANV N ++V VV+ K
Sbjct: 458 ERARRNLFE-FSEWLREHEGEPFTAIVDGANVAYAGHGNVHYSQVQLVVD----KLEDMG 512
Query: 643 WPLIVLHNRRITGHK--------MDQPVNR--ALIEKWKNADALYATPTGSNDDWYWLYA 692
++V+ + G K + Q R ++ + +Y P DD+YW+ A
Sbjct: 513 EKVLVVMPSKYVGEKFYVAGIDSVQQLSEREVGIMNGLLDEGKMYQVPAACLDDYYWMLA 572
Query: 693 AIK--------------------FKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRF-- 730
++ + +LVTND+MRDH LL F RW H V +
Sbjct: 573 SVANQTEHQLHVSIDNRQRRFPGLRPMLVTNDQMRDHKLALLEKRLFRRWTSCHIVNYDL 632
Query: 731 -SFS-----DAGPEFYMPPPCSVVIQESEKGN------WHIPI 761
S+S D F S IQ +E G WH P+
Sbjct: 633 ESYSENEWQDRDVRFVPTDFFSREIQGNEVGGERSSTVWHYPV 675
>gi|397501121|ref|XP_003821243.1| PREDICTED: mitochondrial ribonuclease P protein 3 [Pan paniscus]
Length = 488
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 86/383 (22%), Positives = 144/383 (37%), Gaps = 66/383 (17%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGD 474
I P ++Y + + DV+ A ++ + +L H + P L+A + +
Sbjct: 145 ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSN 204
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
++ +L LR + S A I WF S + K+W
Sbjct: 205 KLLDILSYLRNNQLYPGESFAHSIKTWFES-----IPGKQW------------------- 240
Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
KG++ TTV C CG+ + I L P E + I ++
Sbjct: 241 ----KGQF----TTVRKSGQCSACGKTIESIQLSPEEYGCLKGKIMRDVIDGGDQYRKTT 292
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
++F+ ++ PF+ V+D NV + F R + ++ + + + L+VL
Sbjct: 293 PQELKRFENFIKSRPPFDVVIDGLNVA----KMFPKVRESQLLLNVVSQLAKQNLRLLVL 348
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEM 706
R+ + Q + E K A +A S DD + LYA + C +T D M
Sbjct: 349 -GRKHMLRRSSQWSRDEMEEVQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLM 406
Query: 707 RDHTFQLL---GNDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPI 761
RDH L F +W++ HQ+ F + F V+Q + +WHIP
Sbjct: 407 RDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQ-TTGDSWHIPY 465
Query: 762 ASKQDYDDEER-------RWLCV 777
D D ER +WLC+
Sbjct: 466 ----DEDLVERCSYEVPTKWLCL 484
>gi|149692913|ref|XP_001491097.1| PREDICTED: mitochondrial ribonuclease P protein 3-like [Equus
caballus]
Length = 584
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 87/396 (21%), Positives = 146/396 (36%), Gaps = 65/396 (16%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A +++ +K + I P ++Y + + DV A + + +L H V P L+A
Sbjct: 230 ALLLLEDIKKVMI-PSKKNYHDCIQGALLHQDVKTAWDLYQELLGHDVVPMLETLKAFFD 288
Query: 466 VSVEAGK---GDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKD 522
+ +++ +L LR + S A I WF S
Sbjct: 289 FGKDIKDDQYSNKLLDILLYLRNNQLYPGESFAHSIKTWFESVP---------------- 332
Query: 523 TMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASI 582
G W G TT+ C CG+ + I L P E E +
Sbjct: 333 -----GEQWKG-----------QFTTIQKSGQCLGCGKTIESIRLSPEEYEFLKGKILRD 376
Query: 583 AI------KRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQ 636
I K+ ++FQ ++ + PF+ V+D NV + F AR + V+ +
Sbjct: 377 VIDGGDQYKKTTPQELKRFQNFVKHCPPFDIVIDGLNVA----KMFPKARESQVLLDVVS 432
Query: 637 KFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF 696
+ + L+VL + + + R +E + + + S DD + LYA +
Sbjct: 433 QLAKQNLRLLVLGRKHML--RQGSRWRRDEMEMVQKQASCFFADNISEDDPFLLYATLHS 490
Query: 697 --KCLLVTNDEMRDHTFQLL---GNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSV-VIQ 750
C +T D MRDH L F +W++ HQ+ G + S +
Sbjct: 491 GNHCKFITKDLMRDHKACLPDAKTQRLFFKWQQGHQLAIINRLPGSKITFQRILSHDTVV 550
Query: 751 ESEKGNWHIPIASKQDYDDEER-------RWLCVTR 779
++ +WHIP D D ER +WLC+ R
Sbjct: 551 QTTGDSWHIPY----DEDLVERYSYEVPTKWLCLHR 582
>gi|397615332|gb|EJK63364.1| hypothetical protein THAOC_15979, partial [Thalassiosira oceanica]
Length = 1036
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 93/234 (39%), Gaps = 56/234 (23%)
Query: 566 DLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYG--PFEAVVDAANVGLYSQRNFK 623
DL + E+F R + F WL PF A++D ANVG Y Q +F
Sbjct: 528 DLLDLSAEQFEAFSREDGKGRYARDELRSFSDWLARRTGRPFTAIIDGANVGYYMQ-SFD 586
Query: 624 PARVN-AVVNGIRQKFPSK-KWPLIVL-----HNRRITGHKMDQPVNR---ALIEKWKNA 673
R N +N + + + + PL+V+ R + H Q ++R A++ +
Sbjct: 587 KGRFNYHQINYMVETLIDRGENPLVVVPGKYGRERFHSSHGQVQRLDREEVAIMNRLAEE 646
Query: 674 DALYATPTGSNDDWYWLYAA------------------IKF-------------KCLLVT 702
+Y P DD+YW+ A+ + F + +LVT
Sbjct: 647 GRMYRVPPRCLDDFYWMLASVSDQSSSSSRGPEDGPSDLSFVPGDDPRGRFPGTRPMLVT 706
Query: 703 NDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGN 756
ND+MRDH +LL F RW H V +SF+ + V+ ES GN
Sbjct: 707 NDQMRDHKLELLEPRLFRRWYGCHIVNYSFT------------AFVLGESVAGN 748
>gi|301611732|ref|XP_002935379.1| PREDICTED: mitochondrial ribonuclease P protein 3 [Xenopus
(Silurana) tropicalis]
Length = 583
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 109/256 (42%), Gaps = 23/256 (8%)
Query: 542 WIVSHTTVGGDALCKCCGEKLAIIDLDPIE----TEKFAESV--ASIAIKRERNSSFQKF 595
W +TV + C+ C ++L I L P E + F +SV ++ Q+F
Sbjct: 335 WRGHLSTVSENGHCQVCKQQLESIHLMPEEYRTLKDVFLQSVIEGHDTFRKTTPQELQEF 394
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITG 655
++++ + P++ VVD NV + + + +V+G+ K L++ +
Sbjct: 395 RQFVRSHPPYDIVVDGLNVAYITTKGRGSQTLLDIVSGL---CSGGKRVLVLGRKHMLQE 451
Query: 656 HKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIK--FKCLLVTNDEMRDHTFQL 713
+ Q + L++ + AD + S DD + LYA++ C +T D MRDH L
Sbjct: 452 SRTWQRRHMQLLQ--QRADCFFIDNI-SEDDPFLLYASLNSGSHCCFLTRDLMRDHKSCL 508
Query: 714 LGND---FFPRWKERHQVRFSFSDAGPEFYMPPP-CSVVIQESEKGNWHIPIASKQDYD- 768
F +W+ HQ+ F G + + P C I + +WHIP K D
Sbjct: 509 PDAQTKRLFFKWQRGHQLVLPFYTPGRKVLLQPIMCYDTIVQRTDFSWHIPY-DKMGVDR 567
Query: 769 ---DEERRWLCVTRAN 781
+ + WLC+ + +
Sbjct: 568 ASFEVPKTWLCLQKKH 583
>gi|260831350|ref|XP_002610622.1| hypothetical protein BRAFLDRAFT_65812 [Branchiostoma floridae]
gi|229295989|gb|EEN66632.1| hypothetical protein BRAFLDRAFT_65812 [Branchiostoma floridae]
Length = 523
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 94/398 (23%), Positives = 146/398 (36%), Gaps = 86/398 (21%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
+ + +K +K LG R Y + +G+ S+ E M+ G+ P + A++R
Sbjct: 190 SLEFLKIVKVLG-KAYSRHYNHIIIAAVEHGEKQFGMSLFEEMMSAGLTPSDECYGAVMR 248
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTME 525
A + DRVY L ++R + S S A I +WF
Sbjct: 249 TLSLAEEEDRVYNLFEEMRNNGEYPSQSLALHIKEWFEG--------------------- 287
Query: 526 NKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIK 585
C +L DL E +SV I
Sbjct: 288 -------------------------------ACATRLEGTDLTDEEFHLLHDSVLRRVIH 316
Query: 586 RE---RNSSFQKFQKWLDYY---GPFEAVVDAANVGL-YSQRNFKPAR-VNAVVNGIRQK 637
+ R+++ ++ +K+LD+ ++ VVD NV + + K +R + VV + Q+
Sbjct: 317 GKDIFRSTTPEELKKFLDFIKDRNDYDVVVDGLNVAYAFGSKQKKYSRTLLKVVEHLVQQ 376
Query: 638 FPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF- 696
L H + T H + + IE + L+ T S DD Y L A +
Sbjct: 377 LGLHVLVLGRKHMKVTTAHGAWRRSDMDTIESLAD---LFLTDNVSKDDPYLLSATLSCG 433
Query: 697 -KCLLVTNDEMRDHTFQLLGN---DFFPRWKERHQVR-FSFSDAGPEFYMPPPCSVVIQE 751
++ D MRDH LL N F +W HQ++ S S P F +V+Q
Sbjct: 434 PHARFISGDFMRDHK-ALLDNFVQRLFLKWLRGHQMKLLSISYGAPIFSDVHTFDIVVQR 492
Query: 752 SEKGNWHIPIASKQDYDDEERR--------WLCVTRAN 781
++ WH P YDD E R WLCV R
Sbjct: 493 TQ-NTWHFP------YDDGEPRQGLEGPDKWLCVRRGT 523
>gi|349604148|gb|AEP99782.1| Mitochondrial ribonuclease P protein 3-like protein, partial [Equus
caballus]
Length = 262
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 104/259 (40%), Gaps = 31/259 (11%)
Query: 541 KWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQK 594
+W TT+ C CG+ + I L P E E + I K+ ++
Sbjct: 13 QWKGQFTTIQKSGQCLGCGKTIESIRLSPEEYEFLKGKILRDVIDGGDQYKKTTPQELKR 72
Query: 595 FQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRIT 654
FQ ++ + PF+ V+D NV + F AR + V+ + + + L+VL + +
Sbjct: 73 FQNFVKHCPPFDIVIDGLNVA----KMFPKARESQVLLDVVSQLAKQNLRLLVLGRKHML 128
Query: 655 GHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQ 712
+ R +E + + + S DD + LYA + C +T D MRDH
Sbjct: 129 --RQGSRWRRDEMEMVQKQASCFFADNISEDDPFLLYATLHSGNHCKFITKDLMRDHKAC 186
Query: 713 LL---GNDFFPRWKERHQVRFSFSDAGPEFYMPPPCS--VVIQESEKGNWHIPIASKQDY 767
L F +W++ HQ+ G + S V+Q + +WHIP D
Sbjct: 187 LPDAKTQRLFFKWQQGHQLAIINRLPGSKITFQRILSHDTVVQ-TTGDSWHIPY----DE 241
Query: 768 DDEER-------RWLCVTR 779
D ER +WLC+ R
Sbjct: 242 DLVERYSYEVPTKWLCLHR 260
>gi|157138591|ref|XP_001664268.1| hypothetical protein AaeL_AAEL003879 [Aedes aegypti]
gi|108880556|gb|EAT44781.1| AAEL003879-PA [Aedes aegypti]
Length = 515
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 106/250 (42%), Gaps = 43/250 (17%)
Query: 555 CKCCGEKLAIIDLDPIETEKFAES--VASIAIKRE-----RNSSFQKFQKWLDYYGPFEA 607
C C LA I + P E+ + + ++ IK+E ++FQ +L P++
Sbjct: 279 CSHCKRTLASIVV-PEESFRALRDAFIQAVIIKKEIFNKTTPKELERFQAFLKKTKPYDV 337
Query: 608 VVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALI 667
V+D NV + PA + + + + ++ +++ + R +
Sbjct: 338 VIDGLNVAFSTGNQKSPAVYAMQIAAVVKHYVRQRKRVLI--------------IGRQHM 383
Query: 668 EKWKNADA--------LYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLLGND 717
++W++ D L+ T S DD + LYAA++ + + D MR H+F LLG++
Sbjct: 384 DRWRSKDMKYIRENAFLFLTEDLSQDDPFLLYAALESGPQTDFFSRDLMRKHSF-LLGDE 442
Query: 718 F---FPRWKERHQVRFSFSDAGPEFYMPPPCSV-VIQESEKGN---WHIPIAS---KQDY 767
F RW++ HQ A + P + S G+ WH+P+ K
Sbjct: 443 LGGVFKRWQQEHQYSLLSITADGRVIIKSPFKFDMFAHSVPGDERQWHVPLVEECLKIPK 502
Query: 768 DDEERRWLCV 777
+++ RWLCV
Sbjct: 503 VEKQARWLCV 512
>gi|195340392|ref|XP_002036797.1| GM12478 [Drosophila sechellia]
gi|194130913|gb|EDW52956.1| GM12478 [Drosophila sechellia]
Length = 544
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 108/253 (42%), Gaps = 34/253 (13%)
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAES-VASIAIKR---ERNS--SFQKFQKWLD 600
T +G C+ C + L + + E + +E + + I+R +R++ +F+K+++
Sbjct: 286 THLGALGKCQSCQQHLQPVAISDEEFRQLSECFLERVLIRRDVFQRSTPEEVARFKKFVE 345
Query: 601 YYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL---HNRRITGHK 657
P++ V+D NV + P ++ +V + + F + ++VL H R +
Sbjct: 346 KTAPYDCVIDGLNVAYSTGTKKTPQQMAKLVATVVRHFREQDKRVLVLGREHMRNWSKQA 405
Query: 658 MDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLLG 715
M + A +L+ T S+DD + LYA ++ + + D MR H F LG
Sbjct: 406 MHYVHSNA---------SLFLTSNLSHDDPFLLYATLRSGQETDFFSRDLMRSHAFH-LG 455
Query: 716 NDFFP---RWKERHQVRFSF---SDAGPEFYMPPPCSVVIQESEKGNWHIPIASK----- 764
+ P RW++ HQ FS + G P + G WH+P ++
Sbjct: 456 TELKPIFRRWQQEHQ--FSLVTQTQTGQIIVKEPVRHRLCAHQVAGTWHVPYCAQYTPHP 513
Query: 765 QDYDDEERRWLCV 777
D + WLC+
Sbjct: 514 TDSFEVPANWLCI 526
>gi|297694929|ref|XP_002824716.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 3 [Pongo
abelii]
Length = 567
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 97/242 (40%), Gaps = 29/242 (11%)
Query: 555 CKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLDYYGPFEAV 608
C CG+ + I L P E E + I ++ ++F+ ++ PF+ V
Sbjct: 332 CSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTTPWELKRFKNFIKSCPPFDVV 391
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
+D NV + F R + + + + + L+VL R+ K Q + E
Sbjct: 392 IDGLNVA----KMFPKVRESQFLLNVVSQLAKQNLRLLVL-GRKHMLRKCSQWSQDEMKE 446
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLL---GNDFFPRWK 723
K A +A S DD + LYA + C +T D MRDH L F +W+
Sbjct: 447 VQKQASCFFADNI-SEDDPFLLYATLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQ 505
Query: 724 ERHQVRFSFSDAGPEFYMPPPCSV-VIQESEKGNWHIPIASKQDYDDEER-------RWL 775
+ HQ+ + G + P S + ++ +WHIP D D ER +WL
Sbjct: 506 QGHQLAITNRFPGSKLTFQPILSYDTVVQTTGDSWHIPY----DEDLVERYSYEVPTKWL 561
Query: 776 CV 777
C+
Sbjct: 562 CL 563
>gi|431907348|gb|ELK11321.1| Mitochondrial ribonuclease P protein 3 [Pteropus alecto]
Length = 568
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 99/247 (40%), Gaps = 35/247 (14%)
Query: 555 CKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLDYYGPFEAV 608
C CG+ + I L P E E + I K+ ++F+ ++ Y PF+ V
Sbjct: 333 CLGCGKTIESIHLSPEEYEYLKGKIMRDVIDGGDQYKKTTPQELKRFKNFVKYCPPFDIV 392
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL-- 666
+D NV + F AR + V+ + + + ++VL + M P R
Sbjct: 393 IDGLNVA----KMFPKARESQVLLNVVSQLAKQNLQVLVLGRKH-----MLTPCARWRKD 443
Query: 667 -IEKWKNADALYATPTGSNDDWYWLYAAIK--FKCLLVTNDEMRDHTFQLL---GNDFFP 720
+EK + + + S DD + LYA + C +T D MRDH L F
Sbjct: 444 EMEKVQKQASCFFADNISEDDPFLLYATLHSGSHCKFITKDLMRDHKACLPDAKTQRLFF 503
Query: 721 RWKERHQVRFSFSDAGPEFYMPPPCSV-VIQESEKGNWHIPIASKQDYDDEER------- 772
+W++ HQ+ G + S + ++ +WHIP D D ER
Sbjct: 504 KWQQGHQLAIINRLPGSKITFQHILSYDTVVQTTGDSWHIPY----DEDLVERYSYEVPT 559
Query: 773 RWLCVTR 779
+WLC+ R
Sbjct: 560 KWLCLHR 566
>gi|301110951|ref|XP_002904555.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262095872|gb|EEY53924.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 545
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 104/482 (21%), Positives = 186/482 (38%), Gaps = 99/482 (20%)
Query: 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMK-------SLGINPRL--RSYGPALSVFCNN 435
+NEA +V ++ ++ GD + A+ + +++ +G P+L R+ P L C +
Sbjct: 78 LNEAVFGSVIKLHLAGGDTEAAWMAINKLRRAVRGQQEVGETPKLHFRTVSPLLEHECEH 137
Query: 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD-------------------RV 476
G A S + + +H V + L ++ K + ++
Sbjct: 138 GQFLSAYSRWQQLKQHDVEWTSAMEDVLAQMVAACVKNNEQQLDEYTDSDATETRFHAQM 197
Query: 477 YYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGW 536
LLH L+ + R++SPS A + F ++A + +++ +K G H L
Sbjct: 198 ASLLHDLQLTCREISPSNAQRLLHGF--RDAGYRVESVPSDARMKPKCPCCG---HALNK 252
Query: 537 LGKGKWIVSHTTVGGDAL-CKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKF 595
G + H ++ K KL LDP + R Q
Sbjct: 253 QGMSEQEREHMLTALESRRSKMAPGKLVKEFLDPFRV---------WLMLRHETFQLQTL 303
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQRNFKPA-----RVNAVVNGIRQK--FPSKKWP---- 644
+ P V+D N+ Y +NF+ V+ V ++ + S P
Sbjct: 304 AENPRSSKPLHYVLDGPNIA-YINQNFEAGTYRLDHVDYVARELQAQGHLVSITMPTNYL 362
Query: 645 ----LIVLHNRRITGHKMD--------QPVNRALIEKWKNADALYATPTGS-NDDWYWLY 691
L+ + N+ + P +A++ +WK D +++ T +DD +WLY
Sbjct: 363 ADKFLVRIRNKHFRDMRRQGKYATRERTPEEKAIVARWKEEDMIFSCRTDFLSDDLFWLY 422
Query: 692 AAIKF--KCLLVTNDEMRDHT-FQLLGNDFFPRWKERHQVRFSFSD---------AG--- 736
A++ + +VTND+ RDHT + D RWK+ V AG
Sbjct: 423 ASVLLGREGRVVTNDQGRDHTGAPSISMDLIARWKDMTTVNIEIKHEEAATNAAVAGDWT 482
Query: 737 ---PEFYM----PPPCSVVIQESEKGNWHIP---IASKQDYDDEER------RWLCVTRA 780
P Y+ P P S V Q + ++H P +A+K ++ ++ + RWLCV R
Sbjct: 483 KLIPIEYIKLRHPQPFSRVPQVTAPQHFHFPLAELANKNEHPNQVQSQRKRTRWLCVHRN 542
Query: 781 NS 782
+S
Sbjct: 543 DS 544
>gi|298707573|emb|CBJ30157.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 225
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 80/191 (41%), Gaps = 48/191 (25%)
Query: 651 RRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIK---FKCLLVTNDEMR 707
R+ + + P+ +++KW + + DD YW+YA + L++TND MR
Sbjct: 11 RKFSPKRSWTPIETEIVQKW--VENQWLAMVEGLDDLYWMYATVARDDVNTLVLTNDLMR 68
Query: 708 DHTFQLLGNDFFPRWKERHQVRFSF--SDAGPEFYM----------PPPCSVVIQESEK- 754
DH G F RWK H V FSF GP+ +M PP ++ S K
Sbjct: 69 DHRNFFPGTREFVRWKRSHLVSFSFLWEKGGPQAWMQGKQPEESPTPPAINLSPGASWKE 128
Query: 755 -----GNWHIPIASKQ-----------DYDDEER-------RWLCV------TRANSHMN 785
NWH+P+ ++ D DD R LC+ TRA S +
Sbjct: 129 VQRTGSNWHLPVRVRRNSKKHNCDNNSDRDDGSRDHAEPIKSCLCIPMPTSMTRA-SDPS 187
Query: 786 RQNSYSSPKAS 796
R ++YS PK S
Sbjct: 188 RSSTYSRPKKS 198
>gi|395838225|ref|XP_003792019.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 2
[Otolemur garnettii]
Length = 566
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 101/245 (41%), Gaps = 31/245 (12%)
Query: 555 CKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLDYYGPFEAV 608
C CG+ + I+L P E E + I K+ + F+K++ PF+ V
Sbjct: 331 CSSCGKTIESIELSPEEYEFLTGKIMRDVIDGGDQYKKTTPWELRTFEKFVKSCPPFDIV 390
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
+D NV + F AR + V+ + + + L+VL + + K + +E
Sbjct: 391 IDGLNVA----KMFPKARESQVLLELVSQLAKQNLRLLVLGRKHML--KKSSRWRKDEME 444
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLL---GNDFFPRWK 723
+ + + S DD + LYA + C VT D MRDH L F +W+
Sbjct: 445 MVQKQASCFFADDISKDDPFLLYATLHSGNHCKFVTKDLMRDHKACLPDAKTQRLFFKWQ 504
Query: 724 ERHQ--VRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEER-------RW 774
+ HQ +R F + F + V+Q + +WHIP D D ER +W
Sbjct: 505 QGHQLAIRNKFPGSKMIFQHILSYNTVVQ-TTGDSWHIPY----DEDRVERYSYEVPTKW 559
Query: 775 LCVTR 779
LC+ R
Sbjct: 560 LCLHR 564
>gi|328908723|gb|AEB61029.1| mitochondrial ribonuclease p protein 3-like protein, partial [Equus
caballus]
Length = 250
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 103/259 (39%), Gaps = 31/259 (11%)
Query: 541 KWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQK 594
+W TT+ C CG+ + I L P E E + I K+ ++
Sbjct: 1 QWKGQFTTIQKSGQCLGCGKTIESIRLSPEEYEFLKGKILRDVIDGGDQYKKTTPQELKR 60
Query: 595 FQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRIT 654
FQ ++ + PF+ V+D NV + F AR + V+ + + + L+VL + +
Sbjct: 61 FQNFVKHCPPFDIVIDGLNVA----KMFPKARESQVLLDVVSQLAKQNLRLLVLGRKHML 116
Query: 655 GHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQ 712
+ R +E + + + S DD + YA + C +T D MRDH
Sbjct: 117 --RQGSRWRRDEMEMVQKQASCFFADNISEDDPFLQYATLHSGNHCKFITKDLMRDHKAC 174
Query: 713 LL---GNDFFPRWKERHQVRFSFSDAGPEFYMPPPCS--VVIQESEKGNWHIPIASKQDY 767
L F +W++ HQ+ G + S V+Q + +WHIP D
Sbjct: 175 LPDAKTQRLFFKWQQGHQLAIISRLPGSKITFQRILSHDTVVQ-TTGDSWHIPY----DE 229
Query: 768 DDEER-------RWLCVTR 779
D ER +WLC+ R
Sbjct: 230 DLVERYSYEVPTKWLCLHR 248
>gi|170034795|ref|XP_001845258.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876388|gb|EDS39771.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 519
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 106/251 (42%), Gaps = 45/251 (17%)
Query: 555 CKCCGEKLAIIDLDPIETEKFAES-VASIAIKRE-----RNSSFQKFQKWLDYYGPFEAV 608
C C LA I + + + ++ + ++ IK++ ++FQ +L P++ V
Sbjct: 283 CSHCKSTLASIVVPEDQFQALRDAFIQAVIIKKDIFNKTTPKELERFQTFLARTKPYDVV 342
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
+D NV + PA + + + + V H +R+ + R ++
Sbjct: 343 IDGLNVAFSAGNQKSPAVYAMQLAAVVRHY--------VRHKKRVL------VIGRQHMD 388
Query: 669 KWKNADA--------LYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLLGNDF 718
+W++ D L+ T S DD + LYAA++ + + D MR H+F LLG++
Sbjct: 389 RWRSKDMKYIRENAFLFFTEDLSQDDPFLLYAALESGPRTDFFSRDLMRKHSF-LLGDEL 447
Query: 719 ---FPRWKERHQVRFSFSDAGPE--FYMPPPCSVVIQE----SEKGNWHIPIAS---KQD 766
F RW++ HQ FS P+ + P + E WHIP+ K
Sbjct: 448 GAVFKRWQQEHQ--FSLVSITPDGRVIIRSPFQYDLYAHSLPEEPSRWHIPLVDECLKIH 505
Query: 767 YDDEERRWLCV 777
+++ WLC+
Sbjct: 506 KVEKQATWLCL 516
>gi|24640102|ref|NP_572309.2| CG15896, isoform A [Drosophila melanogaster]
gi|386763916|ref|NP_001245549.1| CG15896, isoform B [Drosophila melanogaster]
gi|7290700|gb|AAF46147.1| CG15896, isoform A [Drosophila melanogaster]
gi|383293244|gb|AFH07263.1| CG15896, isoform B [Drosophila melanogaster]
Length = 544
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 109/254 (42%), Gaps = 36/254 (14%)
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAES-VASIAIKR---ERNS--SFQKFQKWLD 600
T +GG C+ C + L + + E + +E + + I+R +R++ +F+K+++
Sbjct: 286 THLGGLGKCQSCQQHLQPVAISDEEFRQLSECFLERVLIRRDVFQRSTPEEVARFKKFVE 345
Query: 601 YYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL---HNRRITGHK 657
P++ V+D NV + P ++ +V + + F + ++VL H R +
Sbjct: 346 KTAPYDCVIDGLNVAYSTGTKKTPQQLAKLVATVVRHFREQDKRVLVLGREHMRNWSKQA 405
Query: 658 MDQPVNRALIEKWKNADA-LYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLL 714
M + + +A L+ T S+DD + LYA ++ + + D MR H F L
Sbjct: 406 MH----------YVHCNASLFLTSNLSHDDPFLLYATLRSGQETDFFSRDLMRSHAFH-L 454
Query: 715 GNDFFP---RWKERHQVRFSF---SDAGPEFYMPPPCSVVIQESEKGNWHIPIASK---- 764
G + P RW++ HQ FS + G P + WH+P ++
Sbjct: 455 GTELKPIFRRWQQEHQ--FSLVTQTQTGQIIVKEPVRHRLCAHQVADTWHVPYCAQYTPH 512
Query: 765 -QDYDDEERRWLCV 777
D + WLC+
Sbjct: 513 PTDSFEVPANWLCI 526
>gi|54650516|gb|AAV36837.1| SD17694p [Drosophila melanogaster]
Length = 544
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 109/254 (42%), Gaps = 36/254 (14%)
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAES-VASIAIKR---ERNS--SFQKFQKWLD 600
T +GG C+ C + L + + E + +E + + I+R +R++ +F+K+++
Sbjct: 286 THLGGLGKCQSCQQHLQPVAISDEEFRQLSECFLERVLIRRDVFQRSTPEEVARFKKFVE 345
Query: 601 YYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL---HNRRITGHK 657
P++ V+D NV + P ++ +V + + F + ++VL H R +
Sbjct: 346 KTAPYDCVIDGLNVAYSTGTKKTPQQLAKLVATVVRHFREQDKRVLVLGREHMRNWSKQA 405
Query: 658 MDQPVNRALIEKWKNADA-LYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLL 714
M + + +A L+ T S+DD + LYA ++ + + D MR H F L
Sbjct: 406 MH----------YVHCNASLFLTSNLSHDDPFLLYATLRSGQETDFFSRDLMRSHAFH-L 454
Query: 715 GNDFFP---RWKERHQVRFSF---SDAGPEFYMPPPCSVVIQESEKGNWHIPIASK---- 764
G + P RW++ HQ FS + G P + WH+P ++
Sbjct: 455 GTELKPIFRRWQQEHQ--FSLVTQTQTGQIIVKEPVRHRLCAHQVADTWHVPYCAQYTPH 512
Query: 765 -QDYDDEERRWLCV 777
D + WLC+
Sbjct: 513 PTDSFEVPANWLCI 526
>gi|332229156|ref|XP_003263757.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 2
[Nomascus leucogenys]
Length = 567
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 97/243 (39%), Gaps = 31/243 (12%)
Query: 555 CKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLDYYGPFEAV 608
C CG+ + I L P E E + I K+ ++F+ ++ PF+ V
Sbjct: 332 CSACGKTIESIQLSPEEYEYLKGKIMRDVIDGGDQYKKTTPQELKRFENFIKSCPPFDIV 391
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
+D NV + F AR + + + + + L+VL R+ + Q + E
Sbjct: 392 IDGLNVA----KMFPKARESQFLLNVVSQLAKQNLRLLVL-GRKHMLRQCSQWRKDEMKE 446
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLL---GNDFFPRWK 723
K A +A S DD + LYA + C +T D MRDH L F +W+
Sbjct: 447 VQKQASCFFADNI-SEDDPFLLYATLHSGNHCRFITKDLMRDHKACLPDAKTQRLFFKWQ 505
Query: 724 ERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEER-------RW 774
+ HQ+ F + F V+Q + +WHIP D D ER +W
Sbjct: 506 QGHQLAIINRFPGSKLTFQHILSYDTVVQ-TTGDSWHIPY----DEDLVERYSYEVPTKW 560
Query: 775 LCV 777
LC+
Sbjct: 561 LCL 563
>gi|297297693|ref|XP_001085026.2| PREDICTED: mitochondrial ribonuclease P protein 3-like isoform 3
[Macaca mulatta]
Length = 565
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 97/243 (39%), Gaps = 31/243 (12%)
Query: 555 CKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLDYYGPFEAV 608
C CG+ + I L P E E + I K+ ++F+ ++ PF+ V
Sbjct: 330 CLGCGKTIESIQLSPEEYEFLKGRIMRDVIDGGDQYKKTTPQELKRFENFVKSCPPFDIV 389
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
+D NV + F AR + V+ + + + L+VL + + Q + E
Sbjct: 390 IDGLNVA----KMFPKARESQVLLNVVSQLAKQNLRLLVLGRKHMLRQSF-QWRKDEMAE 444
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLL---GNDFFPRWK 723
K A +A S DD + LYA + C +T D MRDH L F +W+
Sbjct: 445 VQKQASCFFADNI-SKDDPFLLYATLHSGNHCRFITKDLMRDHKACLPDAKTQRLFFKWQ 503
Query: 724 ERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEER-------RW 774
+ HQ+ F + F V+Q + +WHIP D D ER +W
Sbjct: 504 QGHQLAIINGFPGSKLTFQHILSYDTVVQ-TTGDSWHIPY----DEDVVERYSYEVPTKW 558
Query: 775 LCV 777
LC+
Sbjct: 559 LCL 561
>gi|402875949|ref|XP_003901753.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 2 [Papio
anubis]
Length = 565
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 96/243 (39%), Gaps = 31/243 (12%)
Query: 555 CKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLDYYGPFEAV 608
C CG+ + I L P E E + I K ++F+ ++ PF+ V
Sbjct: 330 CLGCGKTIESIQLSPEEYEFLKGRIMRDVIDGGDQYKNTTPQELKRFENFIKSCPPFDIV 389
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
+D NV + F AR + V+ + + + L+VL + + Q + E
Sbjct: 390 IDGLNVA----KMFPKARESQVLLNVVSQLAKQNLRLLVLGRKHMLTQSF-QWRKDEMAE 444
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLL---GNDFFPRWK 723
K A +A S DD + LYA + C +T D MRDH L F +W+
Sbjct: 445 VQKQASCFFADNI-SKDDPFLLYATLHSGNHCRFITKDLMRDHKACLPDAKTQRLFFKWQ 503
Query: 724 ERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEER-------RW 774
+ HQ+ F + F V+Q + +WHIP D D ER +W
Sbjct: 504 QGHQLAIINRFPGSKLTFQHILSYDTVVQ-TTGDSWHIPY----DEDVVERYSYEIPTKW 558
Query: 775 LCV 777
LC+
Sbjct: 559 LCL 561
>gi|17946134|gb|AAL49108.1| RE55427p [Drosophila melanogaster]
Length = 364
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 109/254 (42%), Gaps = 36/254 (14%)
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAES-VASIAIKR---ERNS--SFQKFQKWLD 600
T +GG C+ C + L + + E + +E + + I+R +R++ +F+K+++
Sbjct: 106 THLGGLGKCQSCQQHLQPVAISDEEFRQLSECFLERVLIRRDVFQRSTPEEVARFKKFVE 165
Query: 601 YYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL---HNRRITGHK 657
P++ V+D NV + P ++ +V + + F + ++VL H R +
Sbjct: 166 KTAPYDCVIDGLNVAYSTGTKKTPQQLAKLVATVVRHFREQDKRVLVLGREHMRNWSKQA 225
Query: 658 MDQPVNRALIEKWKNADA-LYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLL 714
M + + +A L+ T S+DD + LYA ++ + + D MR H F L
Sbjct: 226 MH----------YVHCNASLFLTSNLSHDDPFLLYATLRSGQETDFFSRDLMRSHAFH-L 274
Query: 715 GNDFFP---RWKERHQVRFSF---SDAGPEFYMPPPCSVVIQESEKGNWHIPIASK---- 764
G + P RW++ HQ FS + G P + WH+P ++
Sbjct: 275 GTELKPIFRRWQQEHQ--FSLVTQTQTGQIIVREPVRHRLCAHQVADTWHVPYCAQYTPH 332
Query: 765 -QDYDDEERRWLCV 777
D + WLC+
Sbjct: 333 PTDSFEVPANWLCI 346
>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
Length = 687
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/360 (21%), Positives = 139/360 (38%), Gaps = 75/360 (20%)
Query: 175 ITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234
+ DE S+K D F + D S+ GD + L+ K+ + G+ +G Y ++LL
Sbjct: 288 LLDEMASQKMVPD---GFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLN 344
Query: 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLES 294
G+ K K L + + + T + I
Sbjct: 345 -------GLCKDGKVSIAEEVLQSLVNAGLVPTRV-------------------IYNTLI 378
Query: 295 NSSYRFDDLDSTFNEKENLGQFSNGHMKLN----SQLLDGRSNLERGPDDQSRKKDWSID 350
N + +L+ F+ GQ + H+K + + L++G ER + Q D ++
Sbjct: 379 NGYCQTGELEGAFS---TFGQMKSRHIKPDHITYNALINGLCKAERITNAQ----DLLME 431
Query: 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMV 410
QD E + + + A GR G + F ++
Sbjct: 432 MQDN------------GVNPTVETFNTL-----------IDAYGRT----GQLEKCFIVL 464
Query: 411 KRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470
M+ G+ P + SYG ++ FC NG + +A ++ + M V P A++ VE
Sbjct: 465 SEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEH 524
Query: 471 GKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSK----EAARLGKKKWNESLIKDTM 524
G D+ + L+ K++++ +SPS T +++ K ++ EA + N LI D +
Sbjct: 525 GPNDQAFILVEKMKSN--GISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAV 582
Score = 41.2 bits (95), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433
I + M +V N A+ + G D AF +V++MKS GI+P + +Y + C
Sbjct: 498 ILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLC 557
Query: 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL---LHK--LRTSVR 488
N + +A + + H + P+ L+ G D+ L +HK ++++VR
Sbjct: 558 NQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVR 617
>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Brachypodium distachyon]
Length = 686
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/329 (20%), Positives = 129/329 (39%), Gaps = 63/329 (19%)
Query: 174 GITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL 233
+ DE S+K D F + D S+ GD + L++++ ++G+K+G Y ++LL
Sbjct: 279 AVLDEMASRKMVPD---GFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILL 335
Query: 234 YLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLE 293
G+ K K L T + N+G L + +I
Sbjct: 336 N-------GLCKDGKISKAEEVLQT----------------LVNSGLL---QTTVIYNTL 369
Query: 294 SNSSYRFDDLDSTFNEKENLGQ--FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351
N + DL+ F+ + + H+ N+ L++G +ER + D I+
Sbjct: 370 INGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNA-LINGLGKVER----ITEAHDLVIEM 424
Query: 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVK 411
+ K E + + + A GR G + F ++
Sbjct: 425 E------------KNGVNPSVETFNTL-----------IDAYGRA----GQLEKCFIILS 457
Query: 412 RMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471
M+ G+ P + SYG ++ FC NG + +A ++ + M V P A++ +E G
Sbjct: 458 DMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECG 517
Query: 472 KGDRVYYLLHKLRTSVRKVSPSTADVIAK 500
D+ + L K+++S S T +++ K
Sbjct: 518 STDQAFMLAEKMKSSGVPPSIVTYNLLIK 546
>gi|296214811|ref|XP_002753864.1| PREDICTED: mitochondrial ribonuclease P protein 3-like isoform 2
[Callithrix jacchus]
Length = 566
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 98/245 (40%), Gaps = 31/245 (12%)
Query: 555 CKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLDYYGPFEAV 608
C CG+ + I L P + E + I K+ +F+ ++ PF+ V
Sbjct: 331 CSGCGQNIESIQLSPEDYEFLKGRIMRDVIDGGDQYKKTTPQELNRFENFVKSCPPFDIV 390
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
+D NV + F AR + ++ + + + L+VL R+ K Q + E
Sbjct: 391 IDGLNVA----KMFPKARESQLLLNVVSQLAKQNLRLLVL-GRKHMLRKSSQWRKDEMEE 445
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLL---GNDFFPRWK 723
K A +A S DD + LYA + C +T D MRDH L F +W+
Sbjct: 446 VQKQARCFFADNI-SKDDPFLLYATLHSGNHCKFITKDLMRDHKACLPDAKTQRLFFKWQ 504
Query: 724 ERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEER-------RW 774
+ HQ+ F + F V+Q + +WHIP D D ER +W
Sbjct: 505 QGHQLAIINGFPGSKLTFQRILSYDTVVQ-TTGDSWHIPY----DEDLVERYSYEVPTKW 559
Query: 775 LCVTR 779
LC+ R
Sbjct: 560 LCLHR 564
>gi|397567103|gb|EJK45394.1| hypothetical protein THAOC_35992 [Thalassiosira oceanica]
Length = 438
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 71/181 (39%), Gaps = 37/181 (20%)
Query: 587 ERNSSFQKFQKWLDYY--GPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWP 644
E KF + LD PF A+VD ANV + ++ VN ++ + + P
Sbjct: 206 EATRMLAKFSERLDTREGKPFTAIVDGANVAYFGFGKVNLHQLMHAVNALQDQ---GEHP 262
Query: 645 LIV--LHNRRITGHKMDQPVN------RALIEKWKNADALYATPTGSNDDWYWLYAAIK- 695
L+V L R + H V L++ K LY P DD YW+ A++
Sbjct: 263 LVVFPLKYTRKSFHLRYGVVQVLGEEELGLLQDLKERGLLYVVPPMCLDDLYWMLASVSD 322
Query: 696 -----------------------FKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSF 732
+ +++TND MRDH +LL F RW H V ++F
Sbjct: 323 QTTSRKGVSIDVPKHDNSGRFPGLRPMVITNDRMRDHKLELLDERAFRRWCCSHIVNYNF 382
Query: 733 S 733
+
Sbjct: 383 T 383
>gi|347966898|ref|XP_321093.4| AGAP001968-PA [Anopheles gambiae str. PEST]
gi|333469850|gb|EAA01143.5| AGAP001968-PA [Anopheles gambiae str. PEST]
Length = 515
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 104/261 (39%), Gaps = 43/261 (16%)
Query: 544 VSHTTVGGDALCKCCGEKLAII----DLDPIETEKFAESVA--SIAIKRERNSSFQKFQK 597
V T + C C L+ I D+ +KF +V R +FQ
Sbjct: 270 VQETRITDGGKCSSCKGTLSSIVVSEDMFQSLRDKFLTAVLINKEIFNRTTPEELNRFQA 329
Query: 598 WLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHK 657
+L P++ V+D NV S P V + + + +K ++V
Sbjct: 330 FLAKTLPYDVVIDGLNVAFSSGNQKSPIVYAQQVAAVVRHYVRQKKRVLV---------- 379
Query: 658 MDQPVNRALIEKWKNADA--------LYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMR 707
+ R ++KW++ + L+ T S DD + LYAA++ K + D MR
Sbjct: 380 ----IGRKHMDKWRSREMKYIRENSFLFLTDDLSQDDPFLLYAALESGPKTDFFSRDLMR 435
Query: 708 DHTFQLLGNDF---FPRWKERHQVRFSFSDAGPE----FYMPPPCSVVIQESEKGNWHIP 760
H+F +LGN+ F RW++ HQ +S P+ P + +S WH+P
Sbjct: 436 KHSF-MLGNELSGVFKRWQQEHQ--YSLLSIMPDGRVLIKAPFKYELYAHKSCDNRWHVP 492
Query: 761 IAS---KQDYDDEERRWLCVT 778
+ + +++ WLC++
Sbjct: 493 LVELGYRIPKVEKQNDWLCLS 513
>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
Length = 691
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 76/360 (21%), Positives = 138/360 (38%), Gaps = 75/360 (20%)
Query: 175 ITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234
+ DE S+K D F + D S+ GD + L+ K + G+ +G Y ++LL
Sbjct: 292 LLDEMASQKMVPD---GFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLN 348
Query: 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLES 294
G+ K K L + + + T + I
Sbjct: 349 -------GLCKDGKVSIAEEVLQSLVNAGLVPTRV-------------------IYNTLI 382
Query: 295 NSSYRFDDLDSTFNEKENLGQFSNGHMKLN----SQLLDGRSNLERGPDDQSRKKDWSID 350
N + +L+ F+ GQ + H+K + + L++G ER + Q D ++
Sbjct: 383 NGYCQTGELEGAFS---TFGQMKSRHIKPDHITYNALINGLCKAERITNAQ----DLLME 435
Query: 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMV 410
QD E + + + A GR G + F ++
Sbjct: 436 MQDN------------GVNPTVETFNTL-----------IDAYGRT----GQLEKCFIVL 468
Query: 411 KRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470
M+ G+ P + SYG ++ FC NG + +A ++ + M V P A++ VE
Sbjct: 469 SEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEH 528
Query: 471 GKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSK----EAARLGKKKWNESLIKDTM 524
G D+ + L+ K++++ +SPS T +++ K ++ EA + N LI D +
Sbjct: 529 GPNDQAFILVEKMKSN--GISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAV 586
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433
I + M +V N A+ + G D AF +V++MKS GI+P + +Y + C
Sbjct: 502 ILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLC 561
Query: 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL---LHK--LRTSVR 488
N + +A + + H + P+ L+ G D+ L +HK ++++VR
Sbjct: 562 NQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVR 621
>gi|194763527|ref|XP_001963884.1| GF21257 [Drosophila ananassae]
gi|190618809|gb|EDV34333.1| GF21257 [Drosophila ananassae]
Length = 544
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 100/256 (39%), Gaps = 34/256 (13%)
Query: 544 VSHTTVGGDALCKCCGEKLAIIDLDP----IETEKFAESVA--SIAIKRERNSSFQKFQK 597
VS T + C+ C + + + + +E F E V S +R F+K
Sbjct: 285 VSDTLLIAPGKCQSCQQHFQPVAISDEQFRMLSESFLERVLIRSDVFQRSTPKEVASFKK 344
Query: 598 WLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL---HNRRIT 654
++D P++ V+D NV + P ++ +V + F + ++VL H R
Sbjct: 345 FVDRTAPYDCVIDGLNVAYSTGTKKSPKQLAKLVATVVSHFREQNKRVLVLGREHMRNWC 404
Query: 655 GHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIK--FKCLLVTNDEMRDHTFQ 712
M + A +L+ T S+DD + LYA +K + D MR H F
Sbjct: 405 KQSMHYVQSNA---------SLFLTNNLSHDDPFLLYATLKSGSDTDFFSRDLMRSHAFH 455
Query: 713 LLGND---FFPRWKERHQVRFSF---SDAGPEFYMPPPCSVVIQESEKGNWHIPIAS--- 763
LG + F +W+++HQ FS + G P ++ G WH+P
Sbjct: 456 -LGPEMKPIFRQWQQQHQ--FSLVTQTKTGKLIVKEPIRHRLVAHKVTGTWHVPYCEVYT 512
Query: 764 --KQDYDDEERRWLCV 777
D + WLC+
Sbjct: 513 PHPSDSFEVPPNWLCL 528
>gi|426376681|ref|XP_004055122.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 3
[Gorilla gorilla gorilla]
Length = 567
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 96/242 (39%), Gaps = 29/242 (11%)
Query: 555 CKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLDYYGPFEAV 608
C CG+ + I L P E E + I ++ ++F+ ++ PF+ V
Sbjct: 332 CSGCGKTIESIQLSPEEYECLKGKIMKDVIEGGDQYRKTTPQELKRFENFIKSRPPFDVV 391
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
+D NV + F R + ++ + + + L+VL R+ + Q + E
Sbjct: 392 IDGLNVA----KMFPKVRESQLLLNVVSQLAKRNLRLLVL-GRKHMLRRSSQWSRDEMEE 446
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLL---GNDFFPRWK 723
K A +A S DD + LYA + C +T D MRDH L F +W+
Sbjct: 447 VQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQ 505
Query: 724 ERHQVRFSFSDAGPEFYMPPPCSV-VIQESEKGNWHIPIASKQDYDDEER-------RWL 775
+ HQ+ G + S + ++ +WHIP D D ER +WL
Sbjct: 506 QGHQLAIVNRFPGSKLTFQHILSYDTVVQTTGDSWHIPY----DEDLVERCSYEVPTKWL 561
Query: 776 CV 777
C+
Sbjct: 562 CL 563
>gi|194384400|dbj|BAG64973.1| unnamed protein product [Homo sapiens]
Length = 567
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 96/242 (39%), Gaps = 29/242 (11%)
Query: 555 CKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLDYYGPFEAV 608
C CG+ + I L P E E + I ++ ++F+ ++ PF+ V
Sbjct: 332 CSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVV 391
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
+D NV + F R + ++ + + + L+VL R+ + Q + E
Sbjct: 392 IDGLNVA----KMFPKVRESQLLLNVVSQLAKRSLRLLVL-GRKHMLRRSSQWSRDEMEE 446
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLL---GNDFFPRWK 723
K A +A S DD + LYA + C +T D MRDH L F +W+
Sbjct: 447 VQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQ 505
Query: 724 ERHQVRFSFSDAGPEFYMPPPCSV-VIQESEKGNWHIPIASKQDYDDEER-------RWL 775
+ HQ+ G + S + ++ +WHIP D D ER +WL
Sbjct: 506 QGHQLAIVNRFPGSKLTFQRILSYDTVVQTTGDSWHIPY----DEDLVERCSCEVPTKWL 561
Query: 776 CV 777
C+
Sbjct: 562 CL 563
>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
Length = 554
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 76/360 (21%), Positives = 138/360 (38%), Gaps = 75/360 (20%)
Query: 175 ITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234
+ DE S+K D F + D S+ GD + L+ K + G+ +G Y ++LL
Sbjct: 155 LLDEMASQKMVPD---GFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLN 211
Query: 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLES 294
G+ K K L + + + T + I
Sbjct: 212 -------GLCKDGKVSIAEEVLQSLVNAGLVPTRV-------------------IYNTLI 245
Query: 295 NSSYRFDDLDSTFNEKENLGQFSNGHMKLN----SQLLDGRSNLERGPDDQSRKKDWSID 350
N + +L+ F+ GQ + H+K + + L++G ER + Q D ++
Sbjct: 246 NGYCQTGELEGAFS---TFGQMKSRHIKPDHITYNALINGLCKAERITNAQ----DLLME 298
Query: 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMV 410
QD E + + + A GR G + F ++
Sbjct: 299 MQDN------------GVNPTVETFNTL-----------IDAYGRT----GQLEKCFIVL 331
Query: 411 KRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470
M+ G+ P + SYG ++ FC NG + +A ++ + M V P A++ VE
Sbjct: 332 SEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEH 391
Query: 471 GKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSK----EAARLGKKKWNESLIKDTM 524
G D+ + L+ K++++ +SPS T +++ K ++ EA + N LI D +
Sbjct: 392 GPNDQAFILVEKMKSN--GISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAV 449
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433
I + M +V N A+ + G D AF +V++MKS GI+P + +Y + C
Sbjct: 365 ILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLC 424
Query: 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL---LHK--LRTSVR 488
N + +A + + H + P+ L+ G D+ L +HK ++++VR
Sbjct: 425 NQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVR 484
>gi|40788241|dbj|BAA20845.2| KIAA0391 [Homo sapiens]
Length = 571
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 96/242 (39%), Gaps = 29/242 (11%)
Query: 555 CKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLDYYGPFEAV 608
C CG+ + I L P E E + I ++ ++F+ ++ PF+ V
Sbjct: 336 CSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVV 395
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
+D NV + F R + ++ + + + L+VL R+ + Q + E
Sbjct: 396 IDGLNVA----KMFPKVRESQLLLNVVSQLAKRNLRLLVL-GRKHMLRRSSQWSRDEMEE 450
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLL---GNDFFPRWK 723
K A +A S DD + LYA + C +T D MRDH L F +W+
Sbjct: 451 VQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQ 509
Query: 724 ERHQVRFSFSDAGPEFYMPPPCSV-VIQESEKGNWHIPIASKQDYDDEER-------RWL 775
+ HQ+ G + S + ++ +WHIP D D ER +WL
Sbjct: 510 QGHQLAIVNRFPGSKLTFQRILSYDTVVQTTGDSWHIPY----DEDLVERCSCEVPTKWL 565
Query: 776 CV 777
C+
Sbjct: 566 CL 567
>gi|375493513|ref|NP_001243607.1| mitochondrial ribonuclease P protein 3 isoform 2 [Homo sapiens]
gi|119586283|gb|EAW65879.1| KIAA0391, isoform CRA_b [Homo sapiens]
gi|119586285|gb|EAW65881.1| KIAA0391, isoform CRA_b [Homo sapiens]
gi|119586287|gb|EAW65883.1| KIAA0391, isoform CRA_b [Homo sapiens]
gi|168278599|dbj|BAG11179.1| KIAA0391 protein [synthetic construct]
Length = 567
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 96/242 (39%), Gaps = 29/242 (11%)
Query: 555 CKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLDYYGPFEAV 608
C CG+ + I L P E E + I ++ ++F+ ++ PF+ V
Sbjct: 332 CSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVV 391
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
+D NV + F R + ++ + + + L+VL R+ + Q + E
Sbjct: 392 IDGLNVA----KMFPKVRESQLLLNVVSQLAKRNLRLLVL-GRKHMLRRSSQWSRDEMEE 446
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLL---GNDFFPRWK 723
K A +A S DD + LYA + C +T D MRDH L F +W+
Sbjct: 447 VQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQ 505
Query: 724 ERHQVRFSFSDAGPEFYMPPPCSV-VIQESEKGNWHIPIASKQDYDDEER-------RWL 775
+ HQ+ G + S + ++ +WHIP D D ER +WL
Sbjct: 506 QGHQLAIVNRFPGSKLTFQRILSYDTVVQTTGDSWHIPY----DEDLVERCSCEVPTKWL 561
Query: 776 CV 777
C+
Sbjct: 562 CL 563
>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 506
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 76/360 (21%), Positives = 138/360 (38%), Gaps = 75/360 (20%)
Query: 175 ITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234
+ DE S+K D F + D S+ GD + L+ K + G+ +G Y ++LL
Sbjct: 107 LLDEMASQKMVPD---GFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLN 163
Query: 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLES 294
G+ K K L + + + T + I
Sbjct: 164 -------GLCKDGKVSIAEEVLQSLVNAGLVPTRV-------------------IYNTLI 197
Query: 295 NSSYRFDDLDSTFNEKENLGQFSNGHMKLN----SQLLDGRSNLERGPDDQSRKKDWSID 350
N + +L+ F+ GQ + H+K + + L++G ER + Q D ++
Sbjct: 198 NGYCQTGELEGAFS---TFGQMKSRHIKPDHITYNALINGLCKAERITNAQ----DLLME 250
Query: 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMV 410
QD E + + + A GR G + F ++
Sbjct: 251 MQDN------------GVNPTVETFNTL-----------IDAYGRT----GQLEKCFIVL 283
Query: 411 KRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470
M+ G+ P + SYG ++ FC NG + +A ++ + M V P A++ VE
Sbjct: 284 SEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEH 343
Query: 471 GKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSK----EAARLGKKKWNESLIKDTM 524
G D+ + L+ K++++ +SPS T +++ K ++ EA + N LI D +
Sbjct: 344 GPNDQAFILVEKMKSN--GISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAV 401
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433
I + M +V N A+ + G D AF +V++MKS GI+P + +Y + C
Sbjct: 317 ILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLC 376
Query: 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL---LHK--LRTSVR 488
N + +A + + H + P+ L+ G D+ L +HK ++++VR
Sbjct: 377 NQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVR 436
>gi|256088941|ref|XP_002580579.1| hypothetical protein [Schistosoma mansoni]
gi|353230872|emb|CCD77289.1| hypothetical protein Smp_096900 [Schistosoma mansoni]
Length = 530
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/320 (20%), Positives = 121/320 (37%), Gaps = 54/320 (16%)
Query: 479 LLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLG 538
L ++T ++ A+ I +WF A L ++W+ L N+G
Sbjct: 244 LFEIMKTHRWIITYEIAECIQRWF-----ANLKHERWSGDL--SAFVNRG---------- 286
Query: 539 KGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIK---------RERN 589
LC C + L D+ + A++ IK +
Sbjct: 287 --------------YLCSVCRKNLTPPDMSQFPFSQMADTFYETVIKGTDIKSLYLTATS 332
Query: 590 SSFQKFQKWLDYYG-PFEAVVDAANVGLYSQRNFKPA--RVNAVVNGIRQKFPSKKWPLI 646
S ++++D P + ++D N+ + F A +V V+ I + F +++ +
Sbjct: 333 SEVMTLKRFIDSQSEPLDCIIDFMNLINIRKFPFDAAGLQVAQVLRQINKDFNLRRFCFV 392
Query: 647 VLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTND 704
+ + P+ + L + + + T + S DD + LY A+K +C +V+ND
Sbjct: 393 SKESTTLRKSWFWDPI-KVLGNQLGISVQKFCTNSSSEDDVFLLYMAMKSGPQCYIVSND 451
Query: 705 EMRDHTFQL---LGNDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPI 761
E + + F LG RW+ Q+ GP + P C + I + + WHIP
Sbjct: 452 EFKKYRFSSGPELGEQI-SRWQSLRQI--VLQHRGPIYQKPSKCDLCIHGNLETGWHIPY 508
Query: 762 --ASKQDYDDEERRWLCVTR 779
Q + WLC+ R
Sbjct: 509 YKGHHQKFHTAVNSWLCLHR 528
>gi|227908787|ref|NP_079649.1| mitochondrial ribonuclease P protein 3 precursor [Mus musculus]
gi|81900785|sp|Q8JZY4.1|MRRP3_MOUSE RecName: Full=Mitochondrial ribonuclease P protein 3;
Short=Mitochondrial RNase P protein 3; Flags: Precursor
gi|22028176|gb|AAH34876.1| RIKEN cDNA 1110008L16 gene [Mus musculus]
gi|74207319|dbj|BAE30844.1| unnamed protein product [Mus musculus]
gi|74207414|dbj|BAE30887.1| unnamed protein product [Mus musculus]
gi|148704785|gb|EDL36732.1| mCG22352, isoform CRA_c [Mus musculus]
Length = 584
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 83/383 (21%), Positives = 143/383 (37%), Gaps = 66/383 (17%)
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK---GDRV 476
P ++YG + + DV+ A ++ + ++ H + P L+A + D++
Sbjct: 239 PSKKNYGDCIQGALLHQDVNTAWNLYQELIGHNLIPPLETLKAFFDYGKDINDDHYSDKL 298
Query: 477 YYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGW 536
+L LR + S A I WF S + ++W
Sbjct: 299 LDILLYLRNNQLYPGESFAHSIKTWFES-----IPGRQW--------------------- 332
Query: 537 LGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNS 590
KG++ TT+ C CG + I L P E E E + I K+
Sbjct: 333 --KGQF----TTIQKSGQCSGCGRTIEPIHLSPEEYEFLKEKIMRDVIDGGDQYKKTTPQ 386
Query: 591 SFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHN 650
++F+ +++ PF+ V+D NV + + + VV+ + Q+ +
Sbjct: 387 ELKRFESFVNSCPPFDIVIDGLNVAKMFPKGRESQNLLGVVSQLAQQNLQLL-----VLG 441
Query: 651 RRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRD 708
R+ Q + + K A +A S DD + LYA + C +T D +RD
Sbjct: 442 RKHMLRPSSQWRKEEMEQVRKQAHCFFADNI-SEDDPFLLYATLNSGNHCKFITKDLLRD 500
Query: 709 HTFQLL---GNDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIAS 763
H L F +W++ HQ+ F + F V+Q + +WHIP
Sbjct: 501 HKACLPDARTQRLFFKWQQGHQLAIMKGFQKSKLTFQHILSYDTVVQRT-GDSWHIPY-- 557
Query: 764 KQDYDDEER-------RWLCVTR 779
D D +R +WLC+ R
Sbjct: 558 --DEDLVQRSSCEVPTKWLCLQR 578
>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 116/266 (43%), Gaps = 26/266 (9%)
Query: 299 RFDDLDSTFNEKENLGQFSNGHMK-----LNSQLLDGRSNLER-----GPDDQSRKKDWS 348
R D+ F EK N G+ SNG + + L+DG + R G ++ R +
Sbjct: 355 RVDEALEVF-EKMNGGE-SNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRC 412
Query: 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFD 408
+ N + K + E++++M D VP N +L + G + A +
Sbjct: 413 MPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVE 472
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468
M+ G+ +Y + FCN +++KA + + MLE G P+ L+
Sbjct: 473 FFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLS 532
Query: 469 EAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNES--LIKDTMEN 526
+AGK DR ++L K++ + SP D+++ FN K K +E+ ++K+ MEN
Sbjct: 533 QAGKLDRASFVLSKMKEA--GFSP---DIVS--FNVLINGFCRKNKLDEAYEMLKE-MEN 584
Query: 527 KGGGWHGLGWLGKGKWIVSHTTVGGD 552
G G+ + ++SH + GD
Sbjct: 585 AGIKPDGVTY----NTLISHFSKTGD 606
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A++M+K M++ GI P +Y +S F GD A + + M++ G+ P AL
Sbjct: 573 DEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGAL 632
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495
+ G D + + +S KV P+T
Sbjct: 633 IHAYCLNGNLDEAMKIFRDM-SSTSKVPPNTV 663
>gi|321477361|gb|EFX88320.1| hypothetical protein DAPPUDRAFT_42022 [Daphnia pulex]
Length = 329
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 37/209 (17%)
Query: 593 QKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRR 652
++FQ ++ P++ V+D NV ++ FK + ++ + + F ++ ++VL +
Sbjct: 143 RRFQNFIQKTAPYDVVIDGLNVAHQGKQTFKYP--DQALSSVVKYFTNQNLRVLVLTRKH 200
Query: 653 ITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIK-FKCLLVTNDEMRDHTF 711
+ + AL+ +AT S DD + L +A++ V+ D RDH F
Sbjct: 201 LL---RGTTLKSALV---------FATEDLSGDDPFLLCSAVQSSNTKFVSEDVFRDHLF 248
Query: 712 QLLGNDF-----FPRWKERHQVRF-SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQ 765
+L DF F RW+ + Q++ SF G + P I + G WHIP
Sbjct: 249 RL--GDFRLQNIFRRWQHKAQMQIVSFDKNGGVRFQQPRKYRTISQFSDGCWHIP----- 301
Query: 766 DYDDEERR--------WLCVTRANSHMNR 786
YDD R WLC+ S + +
Sbjct: 302 -YDDGTPRYSYELPATWLCLQPKTSKITK 329
>gi|157822293|ref|NP_001100200.1| mitochondrial ribonuclease P protein 3 precursor [Rattus
norvegicus]
gi|221272061|sp|B5DF07.1|MRRP3_RAT RecName: Full=Mitochondrial ribonuclease P protein 3;
Short=Mitochondrial RNase P protein 3; Flags: Precursor
gi|149051251|gb|EDM03424.1| similar to 1110008L16Rik protein (predicted) [Rattus norvegicus]
gi|197246823|gb|AAI68878.1| Similar to 1110008L16Rik protein [Rattus norvegicus]
Length = 587
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 92/437 (21%), Positives = 166/437 (37%), Gaps = 79/437 (18%)
Query: 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431
++YE M + T + R + A +++ +K + + P ++YG +
Sbjct: 195 IDVYEIMKAKYKSLESGGYTLLIRGLIHSDRWREALLLLEDIKKVMV-PSKKNYGDCIQG 253
Query: 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK-------GDRVYYLLHKLR 484
+ DV+ A S+ + ++ H + P L L+ + GK +++ +L LR
Sbjct: 254 ALLHQDVNVAWSLYQELVGHNLIP----LLETLKAFFDHGKDMNDDQYSNQLLDILLYLR 309
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIV 544
+ S A I WF S + ++W KG++
Sbjct: 310 NNQLYPGESFAHSIKTWFES-----IPGRQW-----------------------KGQF-- 339
Query: 545 SHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKW 598
TT+ C CG + I L P E E E++ I K+ ++F+++
Sbjct: 340 --TTIQKSGQCSSCGRAIESIHLSPEEYEFLKETIMRDVIDGGDQYKKTTPQELKRFERF 397
Query: 599 LDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKM 658
+ PF+ V+D NV + F R + + GI + + +++ R+
Sbjct: 398 VKSCPPFDIVIDGLNVA----KMFPKGRESQNLLGIVSQLAQQN-LQLLVLGRKHMLRPS 452
Query: 659 DQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIK--FKCLLVTNDEMRDHTFQL--- 713
Q + + K A +A S DD + LYA + C +T D +RDH L
Sbjct: 453 SQWRKDEMEQVRKQAHCFFADNI-SEDDPFLLYATLNSGSHCKFITKDLLRDHKACLPDA 511
Query: 714 LGNDFFPRWKERHQVRFS--FSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDE- 770
F +W++ HQ+ + F + F V+Q + WHIP YD++
Sbjct: 512 RAQRLFFKWQQGHQLAITKGFLKSKLTFQHILSYDTVVQ-TTGDTWHIP------YDEDL 564
Query: 771 --------ERRWLCVTR 779
+WLC+ R
Sbjct: 565 VPRSSCEVPTKWLCLQR 581
>gi|194896203|ref|XP_001978433.1| GG19582 [Drosophila erecta]
gi|190650082|gb|EDV47360.1| GG19582 [Drosophila erecta]
Length = 545
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 109/254 (42%), Gaps = 34/254 (13%)
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAES-VASIAIKR---ERNS--SFQKFQKWLD 600
T +G C+ C + L + + E + +E + + I+R +R++ +F+K++D
Sbjct: 286 TNLGPLGKCQSCQQHLQPVAISDEEFRRLSECFLERVLIRRDVFQRSTPEEVARFKKFVD 345
Query: 601 YYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL---HNRRITGHK 657
P++ V+D NV + P ++ +V + + F + ++VL H R +
Sbjct: 346 KTAPYDCVIDGLNVAYSTGTKKAPQQLANLVATVVRHFRDQDKRVLVLGREHMRNWSKQA 405
Query: 658 MDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLLG 715
M + A +L+ T S+DD + LYA ++ + + D MR H F LG
Sbjct: 406 MHFVHSNA---------SLFLTSNLSHDDPFLLYATLRSGQETDFFSRDLMRSHAFH-LG 455
Query: 716 NDFFP---RWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKG----NWHIPIASK---- 764
+ P RW+++HQ + + + P + ++ G WH+P +
Sbjct: 456 PELKPVFRRWQQQHQFSLATQTQTGQIIVKEPIRHRL-GTQPGKVTDTWHVPYCEQYTQH 514
Query: 765 -QDYDDEERRWLCV 777
D + WLC+
Sbjct: 515 PTDSFEVPANWLCL 528
>gi|196000552|ref|XP_002110144.1| hypothetical protein TRIADDRAFT_53824 [Trichoplax adhaerens]
gi|190588268|gb|EDV28310.1| hypothetical protein TRIADDRAFT_53824 [Trichoplax adhaerens]
Length = 522
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 56/140 (40%), Gaps = 20/140 (14%)
Query: 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEE 446
E L +A D M+K MK G+NP YG L NN D V E
Sbjct: 401 EPDLKTYQVLASCCQSKDQGLKMLKDMKVAGLNPNSFIYGTLLKTAVNNYDFKLVVGVME 460
Query: 447 HMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKE 506
+MLE G YP E ++ L+T++RK +++ + KWF
Sbjct: 461 YMLEDGAYPNE--------------------IIMDILQTALRKSGKASSTKVTKWFPKFY 500
Query: 507 AARLGKKKWNESLIKDTMEN 526
A+ + K N I D +EN
Sbjct: 501 ASWQKRIKANRVEIDDKVEN 520
>gi|156540938|ref|XP_001603527.1| PREDICTED: mitochondrial ribonuclease P protein 3-like [Nasonia
vitripennis]
Length = 533
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 109/252 (43%), Gaps = 28/252 (11%)
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRER---NSSFQKFQKWLDYY- 602
TT+ C C + L L + + + SV S I + SS Q+ +++L +
Sbjct: 288 TTISKRGECSHCSQVLQATTLSKSDFKLLSTSVLSNLIVGKNVFCASSPQELKRYLLFVQ 347
Query: 603 --GPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIV--LHNRRITGHKM 658
P++ V+D NV +++ +P + +V+N + + +K L++ H + M
Sbjct: 348 TMKPYDVVIDGLNVAYGARKANEPGSLQSVLNVVNYFYNGRKRVLVMGRAHMNWWSNETM 407
Query: 659 DQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLLGN 716
+A+ EK AD ++ T S DD Y L+ + + V+ D MR H +L
Sbjct: 408 -----KAIHEK---AD-VFLTKNISQDDPYLLHVTLLSGPQTYFVSRDLMRQHKAKLDDV 458
Query: 717 DF---FPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQ-ESEKGNWHIPIASKQDYDDEER 772
+ F RW+ Q +F+ + PP + I + K NWH+P + D +
Sbjct: 459 NLQIMFRRWQLSRQYKFTKEHKSHFVKLIPPLAFEISAQKNKANWHMPYTTSHDLLLPQE 518
Query: 773 -----RWLCVTR 779
W+C+++
Sbjct: 519 YTIPPNWICLSK 530
>gi|241690293|ref|XP_002411751.1| conserved hypothetical protein [Ixodes scapularis]
gi|215504586|gb|EEC14080.1| conserved hypothetical protein [Ixodes scapularis]
Length = 306
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 21/203 (10%)
Query: 592 FQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL--- 648
+ F+++L F+ V+D NV L N + ++ ++ +K ++V+
Sbjct: 98 LEDFERFLSRAPSFDVVIDGLNVALKGNANSNGDKARNLLLVVKHYTLVEKRKVLVVGRK 157
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFK--CLLVTNDEM 706
H R+ + MDQ W + Y T S DD + L AA ++ + D M
Sbjct: 158 HMRKWPRNVMDQV--------WSHC-VYYLTNDLSEDDPFLLCAAFSRGPGTVVASRDLM 208
Query: 707 RDHTFQLLGN----DFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPI- 761
R+H ++L + D F +W+ HQ S P + +Q S WHIP
Sbjct: 209 RNHRYKLHEDSRMGDLFDKWRRTHQEVLDVSWGKLSVLKPARHQISVQGSNAKGWHIPYD 268
Query: 762 -ASKQDYDDEERRWLCV-TRANS 782
S+ + D WLC+ TR S
Sbjct: 269 DGSELEPYDIRTTWLCLKTREQS 291
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452
VGRM D A ++V+ M++ G+ P + +Y LS +C NGD A + + MLE+G
Sbjct: 380 VGRM-------DEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENG 432
Query: 453 VYPEEPELEALLRVSVE 469
V P+ +L+RV E
Sbjct: 433 VLPDAITYSSLIRVLCE 449
>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
Length = 741
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 29/164 (17%)
Query: 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458
S GD ++A D+ K M+S G P +R+Y + FC +G V++A + M+E G+ P
Sbjct: 226 STGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVV 285
Query: 459 ELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNES 518
L++ G + + LLH S EA L +W
Sbjct: 286 TYTTLIQGQCSEGHLEHAFRLLH----------------------SMEACGLAPNEWTCL 323
Query: 519 LIKDTMENKGGGWHGLGWLG----KGKWI--VSHTTVGGDALCK 556
++ D + G +LG KG + V +T++ DALCK
Sbjct: 324 VLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSM-IDALCK 366
>gi|414882131|tpg|DAA59262.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
Length = 1604
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 26/92 (28%)
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITG 655
++WL+ + A+VD AN+ LY Q NF +
Sbjct: 692 KEWLEANKDYRAIVDGANIALY-QPNFAEGGFSLT------------------------- 725
Query: 656 HKMDQPVNRALIEKWKNADALYATPTGSNDDW 687
M+ P NR LIE W+ ALY +P+GSNDDW
Sbjct: 726 QLMENPSNRHLIETWRTNGALYTSPSGSNDDW 757
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
+ + M S G+ P ++ L V + D C+V E MLE G+ P LL
Sbjct: 1067 LCLSAFREMASHGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLL 1126
Query: 465 RVSVEAGKGDRVYYLLHKLRT 485
++ G+ D+V LL ++ T
Sbjct: 1127 DSFLKEGRKDKVAMLLKEMET 1147
>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
Length = 1603
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 26/92 (28%)
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITG 655
++WL+ + A+VD AN+ LY Q NF +
Sbjct: 692 KEWLEANKDYRAIVDGANIALY-QPNFAEGGFSLT------------------------- 725
Query: 656 HKMDQPVNRALIEKWKNADALYATPTGSNDDW 687
M+ P NR LIE W+ ALY +P+GSNDDW
Sbjct: 726 QLMENPSNRHLIETWRTNGALYTSPSGSNDDW 757
Score = 40.8 bits (94), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
+ + M S G+ P ++ L V + D C+V E MLE G+ P LL
Sbjct: 1067 LCLSAFREMASHGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLL 1126
Query: 465 RVSVEAGKGDRVYYLLHKLRT 485
++ G+ D+V LL ++ T
Sbjct: 1127 DSFLKEGRKDKVAMLLKEMET 1147
>gi|390343387|ref|XP_784164.3| PREDICTED: mitochondrial ribonuclease P protein 3-like
[Strongylocentrotus purpuratus]
Length = 595
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 108/266 (40%), Gaps = 49/266 (18%)
Query: 542 WIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKF 595
W VSHT + +CK C L + E E + S I ++ F
Sbjct: 350 WKVSHTKISHTGVCKSCSSHLEPLQTSGEEFNNLREEIFSKVIRGKDIFRKTTPEELDAF 409
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQ--KFPSKK--WPLIVL--H 649
K++D ++ V+D NV +R P +V +RQ ++ +KK + +VL H
Sbjct: 410 MKFIDSGPSYDIVIDGLNVAKLKKRK-SPGKV------LRQFVEYLTKKLGYSCLVLGRH 462
Query: 650 N---RRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIK--FKCLLVTND 704
+ +R K D V + L AD + T S DD + LYA + K V+ D
Sbjct: 463 HMLKQRNQFEKGDMAVIQDL------ADCFF-TQNMSEDDPFMLYATMHSGTKTKYVSRD 515
Query: 705 EMRDHTFQLL--GNDFFPRWKERHQVR-FSFSDAGPEFYMPPPCSVVIQESEKGNWHIPI 761
+RDH L + F +W+ Q+ F + F VIQ ++K +WHIP
Sbjct: 516 LLRDHKALLSPEAHLSFIKWQRTQQLSPVDFREGKAIFKENLAHDTVIQSTDK-SWHIP- 573
Query: 762 ASKQDYDDEERR--------WLCVTR 779
YDD + R WLC +
Sbjct: 574 -----YDDGQPRFSYEVPLTWLCAVK 594
>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
Length = 912
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 80/166 (48%), Gaps = 8/166 (4%)
Query: 325 SQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYE------KM 378
+ L+DG +RG +++ K + +++ + L+ +A Y + E +M
Sbjct: 325 TTLIDGYC--KRGELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRM 382
Query: 379 CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438
L+ + N A+ T++ + +G D A +K M LG+ ++YG ++ +C G
Sbjct: 383 RLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKA 442
Query: 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
D A S+ + M G+ P A+ R+ VE+GK D+ +L +++
Sbjct: 443 DDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLILRQMK 488
Score = 39.7 bits (91), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
+G D A ++K MKS GINP + S+ + +G DKA + M + G P
Sbjct: 439 IGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLILRQMKQLGCTP 494
>gi|167998422|ref|XP_001751917.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697015|gb|EDQ83352.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1216
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Query: 367 AFQRGFEIYEKM--CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
AF R FE+ M + ++ + A+ G+ + A ++ KRM+S ++
Sbjct: 709 AFLRAFEVLADMRDAPQPIALDHITYGALIAACSRAGEVERALEVYKRMRSSKVSGTTEC 768
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y A+ + G ++ A S+ + M E GV P+E A++ V+ AGK D + +L +++
Sbjct: 769 YTAAVHACSHKGYLNIALSIYDDMREDGVQPDEVFFCAMMDVAGHAGKIDVAFAILQEMK 828
Query: 485 TSVRKVSPSTADVI 498
K SP T + +
Sbjct: 829 NIGTKPSPVTYNTL 842
>gi|299470328|emb|CBN78378.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 723
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%)
Query: 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454
R A S G + AF V+ M G+ PRLR+Y P L C+ D+ A V HM HGV
Sbjct: 104 REAASRGAFEEAFSQVREMVDGGVRPRLRTYSPLLKGLCHKPDMTLASEVWSHMTAHGVQ 163
Query: 455 PEEPELEALLRVSVEAGK 472
P E +++ AG+
Sbjct: 164 PTPEEHIDMIKGWAAAGE 181
>gi|297828726|ref|XP_002882245.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328085|gb|EFH58504.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1091
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G AFD+ + G P ++Y L C +D ACSV E ML+ GV PE +
Sbjct: 759 LGKSKAAFDVFSKTAEFGFTPNAKTYYLTLEALCKRSFMDWACSVCERMLKSGVLPEGEQ 818
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP-STADVIA 499
+ ++ + GK + Y + +T + + P S A +I+
Sbjct: 819 MGNIISWFSKEGKAEEAYSVYELAKTKEKSLPPRSVATLIS 859
>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Cucumis sativus]
Length = 685
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 1/155 (0%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
AK R +++++ M L +E + T + RM MG + + + + M + G P L
Sbjct: 280 AKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNL 339
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
+Y + +G VDKA + +M+++ P E +L V V G+ R+ +L
Sbjct: 340 IAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEV 399
Query: 483 LRTSVRK-VSPSTADVIAKWFNSKEAARLGKKKWN 516
+ K + ++K +S EA RL W+
Sbjct: 400 SNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWS 434
>gi|328715603|ref|XP_001949258.2| PREDICTED: mitochondrial ribonuclease P protein 3-like isoform 1
[Acyrthosiphon pisum]
gi|328715605|ref|XP_003245671.1| PREDICTED: mitochondrial ribonuclease P protein 3-like isoform 2
[Acyrthosiphon pisum]
Length = 531
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 39/247 (15%)
Query: 555 CKCCGEKLAIIDLD----PIETEKFAESVASIAIKRERNSSFQK---FQKWLDYYGPFEA 607
CK C + L ++ I E+F V I NSS Q+ F+ +++ P++
Sbjct: 298 CKNCNQVLEHAEVTNSDFKILQERFLSDVM-IGKNIFNNSSPQELSDFKDFIEITAPYDV 356
Query: 608 VVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL---HNRRITGHKMDQPVNR 664
VVD N+ Y+ R +++ + + F KK ++++ H ++ G + D
Sbjct: 357 VVDGLNLA-YAYRG--KIGDHSLTKFVMKSFIEKKLKVLLIGRKHLVKMLGKEFD----- 408
Query: 665 ALIEKWKNADALYATPTGSNDDWYWLYAAIK--FKCLLVTNDEMRDHTFQLLGN----DF 718
I+K NA ++ T S DD + LYAA+ ++T D MR H + LLG+
Sbjct: 409 -FIKK--NAH-IFFTNDLSKDDPFVLYAAMYSGIDTKILTRDLMRGHKY-LLGDAIIKSI 463
Query: 719 FPRWKERHQVRFSFSDAGPEFYMPPPCSVV--IQESEKGNWHIPI------ASKQDYDDE 770
F +W ++H++ G E + P + + QES G WH+P S D
Sbjct: 464 FQKWLQKHRLGLRIR-PGNEVIIKEPITYLQATQESANGIWHMPYQEFKEPGSWSKPDSS 522
Query: 771 ERRWLCV 777
+W+C+
Sbjct: 523 PDKWMCI 529
>gi|449465242|ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Cucumis sativus]
Length = 690
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 1/155 (0%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
AK R +++++ M L +E + T + RM MG + + + + M + G P L
Sbjct: 285 AKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNL 344
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
+Y + +G VDKA + +M+++ P E +L V V G+ R+ +L
Sbjct: 345 IAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEV 404
Query: 483 LRTSVRK-VSPSTADVIAKWFNSKEAARLGKKKWN 516
+ K + ++K +S EA RL W+
Sbjct: 405 SNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWS 439
>gi|359475966|ref|XP_002279628.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g63330-like [Vitis vinifera]
Length = 563
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 56/108 (51%)
Query: 377 KMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436
+M L+ + N A+ T++ + +G D A +K M LG+ ++YG ++ +C G
Sbjct: 297 RMRLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIG 356
Query: 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
D A S+ + M G+ P A+ R+ VE+GK D+ +L +++
Sbjct: 357 KADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLILRQMK 404
Score = 39.3 bits (90), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
+G D A ++K MKS GINP + S+ + +G DKA + M + G P
Sbjct: 355 IGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLILRQMKQLGCTP 410
>gi|413935415|gb|AFW69966.1| hypothetical protein ZEAMMB73_723641 [Zea mays]
gi|413935416|gb|AFW69967.1| hypothetical protein ZEAMMB73_723641 [Zea mays]
gi|413935417|gb|AFW69968.1| hypothetical protein ZEAMMB73_723641 [Zea mays]
Length = 913
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G ++A D+ + LGINP Y + C+ G+ ++AC V E +E G +P
Sbjct: 403 GLVEVAMDLYRSRVELGINPNKDVYHNLIKALCHGGETEEACLVFEETMEGGYFPGRRTF 462
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNS 504
L V + GK DRV LL++ +V++ + + V+AK+ +
Sbjct: 463 TMLSNVLCQEGKLDRVRELLNR---AVKQEAWAVDSVLAKYLAA 503
>gi|322802765|gb|EFZ22977.1| hypothetical protein SINV_06078 [Solenopsis invicta]
Length = 489
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 96/240 (40%), Gaps = 33/240 (13%)
Query: 555 CKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLDYYGPFEAV 608
CK CG L+ I E ++ A+S+ I ++ KFQ++++ P++ V
Sbjct: 258 CKHCGYSLSKITFTEKEFQELAKSIMDRVIIGSDVYRKTNPQELLKFQRFIENTKPYDIV 317
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL---HNRRITGHKMDQPVNRA 665
+D N+ Y Q P + ++N + F +K ++VL H +++ K Q RA
Sbjct: 318 MDGLNLT-YMQNKTGPT-LYWLINVV-DYFNKQKKKILVLTRKHQKKLFSFK--QIERRA 372
Query: 666 LIEKWKNADALYATPTGSNDDWYWLYAAIK--FKCLLVTNDEMRDHTFQLLGNDF---FP 720
++ S DD Y LYA + + ++ D MR H L F
Sbjct: 373 ---------HVFLLDDLSADDPYILYATMASGMNAMFISLDLMRQHKHSLQNEHLRQTFK 423
Query: 721 RWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEE----RRWLC 776
+W+ HQ S G P C +Q+ WH+P S E ++W C
Sbjct: 424 KWQYSHQYFLKKSKTGIRIQDPFACMPFVQKINNC-WHVPYVSDDLVIAESYEFPKKWCC 482
>gi|358333381|dbj|GAA42040.2| mitochondrial ribonuclease P protein 3 [Clonorchis sinensis]
Length = 518
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 109/276 (39%), Gaps = 59/276 (21%)
Query: 474 DRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHG 533
DR++ +LH+ V VS TA VI WFNS+ + + ME+
Sbjct: 230 DRLFSVLHE---KVWVVSDQTAKVITTWFNSRVPSDYQAQ----------MEDVQ----- 271
Query: 534 LGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERN---- 589
+S TT C C KL + +D ++ A+ A K R
Sbjct: 272 ----------ISGTT------CSHCKSKLPVFRIDEENLKQMADEFYQSAFKGTRQEHLY 315
Query: 590 --------SSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPAR----VNAVVNGIRQK 637
S+ KF + PF+ ++D NV F P + V V+ + ++
Sbjct: 316 LTTTPKELSTLDKFLN--EQTMPFDCIIDIMNVVHLLDAAFVPEKATRLVCEVLRNLNRR 373
Query: 638 FPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAI--K 695
F ++ L V R+ G+K + L + + + T S+DD + LY A+
Sbjct: 374 FGFHRFCL-VGKGARVVGNKTFWSAVKTLGNQLGISVFTFITNQRSDDDIFMLYIALWSG 432
Query: 696 FKCLLVTNDEMRDHTFQLLGNDF---FPRWKERHQV 728
+C LV+NDE + H F +G D +W+ Q+
Sbjct: 433 PRCHLVSNDEFKQHRFT-VGLDLGMRISQWQATRQI 467
>gi|297742710|emb|CBI35344.3| unnamed protein product [Vitis vinifera]
Length = 186
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 27/34 (79%), Gaps = 1/34 (2%)
Query: 691 YAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKE 724
Y I FK L++T+DEMRDH FQLLGNDFFP K+
Sbjct: 22 YKCI-FKRLIMTDDEMRDHIFQLLGNDFFPNGKK 54
>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 371 GFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
F ++EKM +E ++ + RM +M + A + RMK+ G++P + + +
Sbjct: 410 AFSVFEKMSSEEECEPTVSTYDIIVRMFCNMDKVESAIKVWDRMKAKGVHPGMHMFSILI 469
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+ C+ +D AC + ML+ G+ P L + +E G+ D V L K+
Sbjct: 470 NSLCHENKLDIACKYFQEMLDVGIRPPAALFSHLKQALIEDGRKDTVVLLAQKI 523
>gi|356526063|ref|XP_003531639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like isoform 1 [Glycine max]
gi|356526065|ref|XP_003531640.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like isoform 2 [Glycine max]
Length = 522
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416
+RL AF R EI + C+ N +L + R +G+ FDM+++M +
Sbjct: 200 LRLRRADIALAFYR--EIRRRSCVSP---NVYTLNMIIRAYCMLGEVQKGFDMLEKMMDM 254
Query: 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
G++P + S+ +S +CN G A V+ M+E+GV P L+
Sbjct: 255 GLSPNVVSFNTLISGYCNKGLFGLALKVKSLMVENGVQPNVVTFNTLI 302
>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 5/156 (3%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
G E++ +M + N + T + + GD DMA ++ K M S G+ P + +Y L
Sbjct: 415 GMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLD 474
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV 490
C NG ++KA V E++ + P ++ +AGK + + L L S++ V
Sbjct: 475 GLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL--SLKGV 532
Query: 491 SPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
P DV+A R G K+ ++L K+ E+
Sbjct: 533 KP---DVVAYNTMISGFCRKGSKEEADALFKEMKED 565
Score = 39.3 bits (90), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A ++ K M++ GI P + +Y +S CN G A + M+E + P+ AL
Sbjct: 273 DDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSAL 332
Query: 464 LRVSVEAGK 472
+ V+ GK
Sbjct: 333 IDAFVKEGK 341
>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
Length = 347
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 16/170 (9%)
Query: 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420
EDA+K + E+M P N + + G + A ++++++ G P
Sbjct: 68 EDAEK--------LMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTP 119
Query: 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480
SY P L FC +DKA + E M+ G YP+ LL G+ D LL
Sbjct: 120 NSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLL 179
Query: 481 HKLRTSVRKVSP------STADVIAKWFNSKEAARLGKKKWNESLIKDTM 524
H+L+ + SP + D + K +KEA L + ++ L D +
Sbjct: 180 HQLKG--KGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDII 227
>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
Length = 951
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%)
Query: 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431
+ E+M V ++ ++ GD D A ++V+RMK+ G+ P + +Y +
Sbjct: 207 LAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAALEVVERMKADGVEPNVVTYTALIGE 266
Query: 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+C +D+A S+ E M+ GV P+ L AL+ G+ Y L ++
Sbjct: 267 YCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREM 318
>gi|307197003|gb|EFN78378.1| Uncharacterized protein KIAA0391 [Harpegnathos saltator]
Length = 535
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 114/268 (42%), Gaps = 36/268 (13%)
Query: 542 WIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAES------VASIAIKRERNSSFQKF 595
W + T + C C +L+ + + + + V S + +KF
Sbjct: 285 WSAAPTYISKGGKCSKCSMQLSDLSFNQNIFQDLVNAFMKKVIVGSNIYYKSHPKELEKF 344
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL---HNRR 652
+++ P++ V+D NV + A+ N +V+ ++ F +K ++VL H ++
Sbjct: 345 IEFIARTKPYDVVIDGLNVTYAMTKGV--AKPNTLVDVVKY-FVKRKQKVLVLTRKHQKK 401
Query: 653 ITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHT 710
+ +++E + ++ T S+DD Y LYA + K + V++D MR H
Sbjct: 402 L-----------SVLEYIQKYAFVFWTNNLSSDDPYILYATLASGEKAIFVSSDLMRQHK 450
Query: 711 FQLLGNDF---FPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGN-WHIPIASKQD 766
+ L N F +W+ HQ + +G +F + P + + + N WHIP S
Sbjct: 451 YLLGDNRLQWEFKKWQCSHQ--YFVRSSGNQFKIISPFNFMPHAQKNSNSWHIPYLSDTS 508
Query: 767 YDDEER----RWLCVTRANSHMNRQNSY 790
+ E +W C + ++ N+++ Y
Sbjct: 509 TNAETYEFPDKWYCFHKMHNK-NKKDQY 535
>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
Length = 883
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G+ ++ M++RMK G +P + +Y ++ CNNG V++A ++ M GV P
Sbjct: 594 GETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTY 653
Query: 461 EALLRVSVEAGKGDRVYYLL 480
L++ V+AG+ DR + ++
Sbjct: 654 AVLVKAHVKAGRLDRAFQIV 673
>gi|347966896|ref|XP_003435980.1| AGAP001968-PB [Anopheles gambiae str. PEST]
gi|333469851|gb|EGK97433.1| AGAP001968-PB [Anopheles gambiae str. PEST]
Length = 536
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 107/273 (39%), Gaps = 46/273 (16%)
Query: 544 VSHTTVGGDALCKCCGEKLAII----DLDPIETEKFAESVA--SIAIKRERNSSFQKFQK 597
V T + C C L+ I D+ +KF +V R +FQ
Sbjct: 270 VQETRITDGGKCSSCKGTLSSIVVSEDMFQSLRDKFLTAVLINKEIFNRTTPEELNRFQA 329
Query: 598 WLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHK 657
+L P++ V+D NV S P V + + + +K ++V+ +
Sbjct: 330 FLAKTLPYDVVIDGLNVAFSSGNQKSPIVYAQQVAAVVRHYVRQKKRVLVIGRKH----- 384
Query: 658 MDQPVNRALIEKWKNA-----DALYA---------------TPTGSNDDWYWLYAAIKF- 696
MD+ +R + +N+ D LY P S DD + LYAA++
Sbjct: 385 MDKWRSREMKYIRENSFLFLTDDLYVWVSGLLESTVTYFTFAPFRSQDDPFLLYAALESG 444
Query: 697 -KCLLVTNDEMRDHTFQLLGNDF---FPRWKERHQVRFSFSDAGPE----FYMPPPCSVV 748
K + D MR H+F +LGN+ F RW++ HQ +S P+ P +
Sbjct: 445 PKTDFFSRDLMRKHSF-MLGNELSGVFKRWQQEHQ--YSLLSIMPDGRVLIKAPFKYELY 501
Query: 749 IQESEKGNWHIPIAS---KQDYDDEERRWLCVT 778
+S WH+P+ + +++ WLC++
Sbjct: 502 AHKSCDNRWHVPLVELGYRIPKVEKQNDWLCLS 534
>gi|391343648|ref|XP_003746119.1| PREDICTED: mitochondrial ribonuclease P protein 3-like [Metaseiulus
occidentalis]
Length = 199
Score = 50.4 bits (119), Expect = 0.004, Method: Composition-based stats.
Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 35/207 (16%)
Query: 594 KFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRR- 652
+FQ ++ GP++A++D NV + + R++ ++ + + S+ L+ H +R
Sbjct: 3 RFQNFIRRNGPYDAIIDGLNVVYRYELPLR--RIHGLLEDYKARGFSRILILLRSHAKRE 60
Query: 653 ITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAI--KFKCLLVTNDEMRDHT 710
K+ V+ +Y S DD Y + AA+ +C L++ D RDH
Sbjct: 61 FNMMKLPPDVD------------MYCVQNASRDDPYIILAALLSHDRCRLLSFDFYRDHI 108
Query: 711 FQLLGNDFFPR----------WKERHQVRF----SFSDAGPEFYMP-PPCSVVIQESEKG 755
++L + F R W H+ F A P + P + + G
Sbjct: 109 YRLKKSKQFDRDDNTARTFFKWLNTHKDSFIDFQKPGSAAPTIKLRMAPAHFPVPHVDIG 168
Query: 756 NWHIPIASKQDYDDEERRWLCVTRANS 782
WHIP K Y WLC+ R +S
Sbjct: 169 GWHIPFVQKTGYPPT---WLCLRRRDS 192
>gi|350396203|ref|XP_003484477.1| PREDICTED: hypothetical protein LOC100740846 [Bombus impatiens]
Length = 473
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 95/232 (40%), Gaps = 24/232 (10%)
Query: 542 WIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRE---RNSSFQKFQKW 598
W VS T V + C+ C ++ L + E+ +++ I + Q F +
Sbjct: 235 WSVSQT-VMSRSRCRKCNVDISQQSLSDEDYERLLQAIKKRLIFDKIVTEPEEMQLFINF 293
Query: 599 LDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL--HNRRITGH 656
+D P++ +VD N+ ++ F+ ++ V + K LI+ H ++
Sbjct: 294 IDKNKPYDIIVDGLNIMYRTKHGFRKDIMDEVKRIFKSYEKQNKKILIIAKEHVKKFIA- 352
Query: 657 KMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFK--CLLVTNDEMRDHTFQLL 714
K+D ++AD Y GS DD + LYAA + +++ D MR H F L
Sbjct: 353 KID----------LQSADCFYV-ENGSKDDVFLLYAAFASRKNGKIISKDLMRQHVFALQ 401
Query: 715 G---NDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIAS 763
N F +W+ HQ + P ++Q+ + +WHIP +
Sbjct: 402 DVELNVLFKKWQLSHQFFIDVKKGFIQLNSLLPIDAIVQK-QNNSWHIPYVA 452
>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
mitochondrial [Vitis vinifera]
Length = 876
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G+ ++ M++RMK G +P + +Y ++ CNNG V++A ++ M GV P
Sbjct: 571 GETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTY 630
Query: 461 EALLRVSVEAGKGDRVYYLL 480
L++ V+AG+ DR + ++
Sbjct: 631 AVLVKAHVKAGRLDRAFQIV 650
>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 557
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A +++ ++ G P SY P L FC +D+A + E M+ G YP+ LL
Sbjct: 315 AMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLT 374
Query: 466 VSVEAGKGDRVYYLLHKLR----TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIK 521
G+ D LLH+L+ T V + D + K +KEA L + + L
Sbjct: 375 ALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQP 434
Query: 522 DTM 524
D +
Sbjct: 435 DII 437
>gi|50510469|dbj|BAD32220.1| mKIAA0391 protein [Mus musculus]
Length = 275
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 100/259 (38%), Gaps = 31/259 (11%)
Query: 541 KWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQK 594
+W TT+ C CG + I L P E E E + I K+ ++
Sbjct: 22 QWKGQFTTIQKSGQCSGCGRTIEPIHLSPEEYEFLKEKIMRDVIDGGDQYKKTTPQELKR 81
Query: 595 FQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRIT 654
F+ +++ PF+ V+D NV + + + VV+ + Q+ + R+
Sbjct: 82 FESFVNSCPPFDIVIDGLNVAKMFPKGRESQNLLGVVSQLAQQNLQLL-----VLGRKHM 136
Query: 655 GHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQ 712
Q + + K A +A S DD + LYA + C +T D +RDH
Sbjct: 137 LRPSSQWRKEEMEQVRKQAHCFFAD-NISEDDPFLLYATLNSGNHCKFITKDLLRDHKAC 195
Query: 713 L---LGNDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDY 767
L F +W++ HQ+ F + F V+Q + +WHIP D
Sbjct: 196 LPDARTQRLFFKWQQGHQLAIMKGFQKSKLTFQHILSYDTVVQRT-GDSWHIPY----DE 250
Query: 768 DDEER-------RWLCVTR 779
D +R +WLC+ R
Sbjct: 251 DLVQRSSCEVPTKWLCLQR 269
>gi|12834350|dbj|BAB22879.1| unnamed protein product [Mus musculus]
Length = 317
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 100/259 (38%), Gaps = 31/259 (11%)
Query: 541 KWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQK 594
+W TT+ C CG + I L P E E E + I K+ ++
Sbjct: 64 QWKGQFTTIQKSGQCSGCGRTIEPIHLSPEEYEFLKEKIMRDVIDGGDQYKKTTPQELKR 123
Query: 595 FQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRIT 654
F+ +++ PF+ V+D NV + + + VV+ + Q+ + R+
Sbjct: 124 FESFVNSCPPFDIVIDGLNVAKMFPKGRESQNLLGVVSQLAQQNLQLL-----VLGRKHM 178
Query: 655 GHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQ 712
Q + + K A +A S DD + LYA + C +T D +RDH
Sbjct: 179 LRPSSQWRKEEMEQVRKQAHCFFAD-NISEDDPFLLYATLNSGNHCKFITKDLLRDHKAC 237
Query: 713 LLG---NDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDY 767
L F +W++ HQ+ F + F V+Q + +WHIP D
Sbjct: 238 LPDARTQRLFFKWQQGHQLAIMKGFQKSKLTFQHILSYDTVVQRT-GDSWHIPY----DE 292
Query: 768 DDEER-------RWLCVTR 779
D +R +WLC+ R
Sbjct: 293 DLVQRSSCEVPTKWLCLQR 311
>gi|357115831|ref|XP_003559689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g55840-like [Brachypodium distachyon]
Length = 968
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 379 CLDEVP--MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436
C+ +P +++ +L A+ + G D A D+ ++M ++ P + +Y LS FC G
Sbjct: 454 CIVHIPSAIDQKTLNALLLGICNHGSLDEALDLCEKMVTINFIPDIHTYTILLSGFCRKG 513
Query: 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTAD 496
+ A + + MLE G+ P+ LL+ ++ G+ YL ++ AD
Sbjct: 514 KIVPAVILLQMMLEKGLVPDIVTYTCLLKGLIKEGQVKAASYLFQEIICK----EGMYAD 569
Query: 497 VIAKWFNSKEAARL--GKKKWNESLIKDTMENK 527
IA +NS L GK E I D +NK
Sbjct: 570 CIA--YNSMMNGYLKAGKLHKVEMTIYDMNQNK 600
>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
Length = 833
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G+ ++ M++RMK G +P + +Y ++ CNNG V++A ++ M GV P
Sbjct: 528 GETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTY 587
Query: 461 EALLRVSVEAGKGDRVYYLL 480
L++ V+AG+ DR + ++
Sbjct: 588 AVLVKAHVKAGRLDRAFQIV 607
>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
Length = 1244
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ G E++ +M + N + + + GD DMA ++ K M S G+ P + +Y
Sbjct: 1027 EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 1086
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L C NG ++KA V E++ + P ++ +AGK + + L L S++
Sbjct: 1087 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL--SLK 1144
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
V P DV+A R G K+ ++L K+ E+
Sbjct: 1145 GVKP---DVVAYNTMISGFCRKGSKEEADALFKEMKED 1179
Score = 39.3 bits (90), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A ++ K M++ GI P + +Y +S CN G A + M+E + P+ AL
Sbjct: 887 DDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSAL 946
Query: 464 LRVSVEAGK 472
+ V+ GK
Sbjct: 947 IDAFVKEGK 955
>gi|148704783|gb|EDL36730.1| mCG22352, isoform CRA_a [Mus musculus]
Length = 271
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 100/259 (38%), Gaps = 31/259 (11%)
Query: 541 KWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQK 594
+W TT+ C CG + I L P E E E + I K+ ++
Sbjct: 18 QWKGQFTTIQKSGQCSGCGRTIEPIHLSPEEYEFLKEKIMRDVIDGGDQYKKTTPQELKR 77
Query: 595 FQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRIT 654
F+ +++ PF+ V+D NV + + + VV+ + Q+ + R+
Sbjct: 78 FESFVNSCPPFDIVIDGLNVAKMFPKGRESQNLLGVVSQLAQQNLQLL-----VLGRKHM 132
Query: 655 GHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQ 712
Q + + K A +A S DD + LYA + C +T D +RDH
Sbjct: 133 LRPSSQWRKEEMEQVRKQAHCFFAD-NISEDDPFLLYATLNSGNHCKFITKDLLRDHKAC 191
Query: 713 LL---GNDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDY 767
L F +W++ HQ+ F + F V+Q + +WHIP D
Sbjct: 192 LPDARTQRLFFKWQQGHQLAIMKGFQKSKLTFQHILSYDTVVQRT-GDSWHIPY----DE 246
Query: 768 DDEER-------RWLCVTR 779
D +R +WLC+ R
Sbjct: 247 DLVQRSSCEVPTKWLCLQR 265
>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
gi|194702156|gb|ACF85162.1| unknown [Zea mays]
gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
Length = 567
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 16/170 (9%)
Query: 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420
EDA+K + E+M P N + + G + A +++++M G P
Sbjct: 288 EDAEK--------LMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTP 339
Query: 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480
SY P L FC + KA E M+ G YP+ LL G+ D LL
Sbjct: 340 NSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELL 399
Query: 481 HKLRTSVRKVSP------STADVIAKWFNSKEAARLGKKKWNESLIKDTM 524
H+L+ + SP + D + K +KEA L + ++ L D +
Sbjct: 400 HQLKD--KGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDII 447
>gi|302761606|ref|XP_002964225.1| hypothetical protein SELMODRAFT_81759 [Selaginella moellendorffii]
gi|300167954|gb|EFJ34558.1| hypothetical protein SELMODRAFT_81759 [Selaginella moellendorffii]
Length = 580
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 379 CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438
C +V M + A+ M M+ D F +VK M+ G+ P Y L FC + +
Sbjct: 371 CKPDVVMYSIVIDALCAMGMT----DEGFVVVKAMEERGVKPDAVVYTIFLYAFCRSARL 426
Query: 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
D AC + E M+E G YP+ LL AG+
Sbjct: 427 DDACRLLEMMVEAGCYPDVISYNTLLFALCSAGQ 460
>gi|255557625|ref|XP_002519842.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540888|gb|EEF42446.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Query: 364 KKYAFQRGFEIYEK----MCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
K F R FE+ +K M +E+ ++ + + + A DMA + +RM G+
Sbjct: 205 KSLRFGRQFELIDKLANEMVSNEIELDNITYSTIITCAKRCNRFDMALEWFERMYKTGLM 264
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
P +Y L V+ G V++ S+ E + G P+ L ++ EAG D + Y+
Sbjct: 265 PDEVTYSAILDVYAKLGRVEEVLSLYERGVASGWKPDPITFSVLAKMFGEAGDYDGIRYV 324
Query: 480 LHKLRT 485
L ++++
Sbjct: 325 LQEMKS 330
Score = 39.3 bits (90), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 4/136 (2%)
Query: 355 DEIRLSEDAKKYA----FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMV 410
DE+ S YA + +YE+ + + + + +M GD D ++
Sbjct: 266 DEVTYSAILDVYAKLGRVEEVLSLYERGVASGWKPDPITFSVLAKMFGEAGDYDGIRYVL 325
Query: 411 KRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470
+ MKSL + P + Y L G A S+ + M+E G+ P E L AL ++ +A
Sbjct: 326 QEMKSLAVQPNVVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPNEKTLTALAKIYGKA 385
Query: 471 GKGDRVYYLLHKLRTS 486
L ++R++
Sbjct: 386 RWAKDAMELWERMRSN 401
>gi|195432522|ref|XP_002064272.1| GK20077 [Drosophila willistoni]
gi|194160357|gb|EDW75258.1| GK20077 [Drosophila willistoni]
Length = 528
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 99/245 (40%), Gaps = 31/245 (12%)
Query: 555 CKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQK--------FQKWLDYYGPFE 606
C C + L + + + ++ ES + R + FQK F+ +++ P++
Sbjct: 289 CLHCHQHLQPVAISDEQFQQLRESFLEKVLIR--HDVFQKSTPEEVERFKAYVERTLPYD 346
Query: 607 AVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
V+D NV PA++ +V + + F ++ ++VL + M Q A+
Sbjct: 347 CVIDGLNVAYSMGTKKSPAQLAQLVANVVRYFRERRKRVLVLGRQH-----MRQWSKSAM 401
Query: 667 IEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLLGNDFFP---R 721
NA +L+ S+DD + LYA +K + D MR H LLG D P R
Sbjct: 402 HYIQANA-SLFLAQNLSHDDPFLLYATLKSGQDTDFFSRDLMRSHA-HLLGPDLKPIFRR 459
Query: 722 WKERHQVRFSFSDAGPEFYMPPPCSVVIQ----ESEKGNWHIPIASK-----QDYDDEER 772
W++ HQ + + P + ++ +WH+P D +
Sbjct: 460 WQQEHQHSLVAQTQTGQIVVKEPIRFRLTAHHLREDEMSWHVPYCETYTPKPPDSFEIPE 519
Query: 773 RWLCV 777
+WLC+
Sbjct: 520 QWLCL 524
>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62670, mitochondrial; Flags: Precursor
gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
Length = 630
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ G E++ +M + N + + + GD DMA ++ K M S G+ P + +Y
Sbjct: 413 EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 472
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L C NG ++KA V E++ + P ++ +AGK + + L L S++
Sbjct: 473 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL--SLK 530
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
V P DV+A R G K+ ++L K+ E+
Sbjct: 531 GVKP---DVVAYNTMISGFCRKGSKEEADALFKEMKED 565
Score = 39.3 bits (90), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A ++ K M++ GI P + +Y +S CN G A + M+E + P+ AL
Sbjct: 273 DDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSAL 332
Query: 464 LRVSVEAGK 472
+ V+ GK
Sbjct: 333 IDAFVKEGK 341
>gi|302768873|ref|XP_002967856.1| hypothetical protein SELMODRAFT_169254 [Selaginella moellendorffii]
gi|300164594|gb|EFJ31203.1| hypothetical protein SELMODRAFT_169254 [Selaginella moellendorffii]
Length = 731
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRM--AMSMGDGDMAFDMVKRMKSLGINPRLRS 424
A +R FE++ ++ E P+N +T + GDGD A+++ M+ GI
Sbjct: 201 AVKRAFEVFTEL-KSENPINPNHVTMCSLIDACSKAGDGDSAYEVYTMMRKRGIGGCPEP 259
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
Y A+ ++G++++A S+ + M + GV P+E AL+ V+ A K D + +L ++
Sbjct: 260 YTAAVHACSSSGNLERAFSIYDDMKKDGVKPDEIFFSALIDVAGHASKIDCAFDVLQEV 318
Score = 40.0 bits (92), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
+R F IY+ M D V +E +A+ +A D AFD+++ ++ + P +
Sbjct: 273 LERAFSIYDDMKKDGVKPDEIFFSALIDVAGHASKIDCAFDVLQEVEKYSLVPGPVIFSS 332
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
+ V N G+ +KA + E++ G+ P L AL+
Sbjct: 333 LMGVCSNTGNWEKAIFLYENIQAVGIRPSVSTLNALM 369
>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
Length = 425
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ G E++ +M + N + + + GD DMA ++ K M S G+ P + +Y
Sbjct: 208 EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 267
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L C NG ++KA V E++ + P ++ +AGK + + L L S++
Sbjct: 268 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL--SLK 325
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
V P DV+A R G K+ ++L K+ E+
Sbjct: 326 GVKP---DVVAYNTMISGFCRKGSKEEADALFKEMKED 360
>gi|320163962|gb|EFW40861.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 717
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 78/369 (21%), Positives = 140/369 (37%), Gaps = 70/369 (18%)
Query: 464 LRVSVEAGKGDRVYYLLHKLR----TSVRKVSPSTADVI------AKWFNSKEAARLGKK 513
LR+ A +G ++ +L +L TS +PS ++ +K ++++ +G
Sbjct: 354 LRLCAAALQGGQIEPVLQRLSHSNSTSAITSNPSFLPLLFEGLPRSKALAARQSTTIGLW 413
Query: 514 KWN-----ESLIKDTMENKGGGWHGLGWLGKGKWIV---SHTTVGGDAL---CKCCGEKL 562
W S I T E + + W+ + I S +T DA C CG L
Sbjct: 414 TWAVASLARSSIALTAEGAQAILNYVRWMSESPEIGQDWSASTAHSDATSFSCSSCGHSL 473
Query: 563 AIIDLDPIETEKFAESVASIAIKRER-NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQR- 620
K E+ ++ R + + ++++ GPF+ VVD++NV Y Q
Sbjct: 474 VNQPPSSAVLHKLVEAFTAVYQTRSNLTQTLLRLERFVRQNGPFDMVVDSSNVCHYYQSL 533
Query: 621 NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATP 680
F P +V+ + + P+ LI+ R + ++ + E + +A + T
Sbjct: 534 RFCP----SVLTRVLAEVPASTRVLII-SARPTRFENLSSNMHTFVSEAYDDASIILGT- 587
Query: 681 TGSNDDWYWLYAAIKF---KCLLVTNDEMRDHTFQLLGN--DFFPRWKERHQVRFS---- 731
L+ + F +++ND +RDH +L G+ F +W + +V FS
Sbjct: 588 ---------LHCQLAFPDHPVTILSNDLLRDHYARLNGDLAIAFAKWCDLVRVGFSIRHP 638
Query: 732 ------------------FSDAGPEFYMPPPCSVVIQESE----KGNWHIPIASKQDYD- 768
S+A PP Q S+ +WH+P + D
Sbjct: 639 NAAQPTQAKMASAAFLSQLSNASVSLLHPPSIRPFPQHSKHPDGSSSWHLPFQDEAAEDA 698
Query: 769 DEERRWLCV 777
+WLCV
Sbjct: 699 PSPLKWLCV 707
>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 831
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 6/161 (3%)
Query: 308 NEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDAD----EIRLSEDA 363
NE E+ G N K S ++DG L + S +D S D I ++
Sbjct: 394 NEMEDQGIKHN--RKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFC 451
Query: 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423
K R E+ +M + P + T + M +GD MAF+ V+ MK G P
Sbjct: 452 KNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAA 511
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
+Y + G +D+A S+ + M+ GV+P E L+
Sbjct: 512 TYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLI 552
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 116/302 (38%), Gaps = 38/302 (12%)
Query: 177 DEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL-YL 235
+++G K ++K S V+L GD A +++ GIK YN+L+
Sbjct: 397 EDQGIKHNRKTYSMIIDGYVQL------GDTANAFSVFEDMSNAGIKPDGITYNILMNAF 450
Query: 236 CSSA----AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD-------SRDMDNNGQLDYG 284
C + A+ ++ +SG TL T+ + ++GD RDM G
Sbjct: 451 CKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSA 510
Query: 285 SSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRK 344
++ + + + D S +E G N + + L++G + + G + K
Sbjct: 511 ATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNE--RSYTTLIEGYACI--GDMGLAFK 566
Query: 345 KDWSIDNQDADEIRLSEDAKKYA-----------FQRGFEIYEKMCLDEVPMNEASLTAV 393
I E+ L D YA Q I +M VPMN +
Sbjct: 567 YFNRIK-----EVGLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNIL 621
Query: 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453
GD A D++++M+ G+ P + SY ++ C GD+ KA E M + GV
Sbjct: 622 LDGWAQRGDMWEASDIMQKMRHEGLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQGV 681
Query: 454 YP 455
P
Sbjct: 682 QP 683
>gi|301096671|ref|XP_002897432.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262107123|gb|EEY65175.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 238
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 665 ALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQ---LLGNDFFPR 721
AL+ + + D + TP+ ++DD+Y + A+K+ +VTND RDH G
Sbjct: 7 ALLNQLVHQDHVILTPSQAHDDFYVIDYAVKYNGFIVTNDMFRDHVSNKRIFHGKRLTSN 66
Query: 722 WKERHQVRFSFSDAGPEFYMPPPCSVVIQESE 753
W H + F+F G EF MP P ++ ES+
Sbjct: 67 WVRSHCIDFTF--VGTEF-MPNPRTMERAESD 95
>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1113
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ E+Y +M L+ + + + +A+ D + +++ M+SLG+ P + +Y
Sbjct: 211 REALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTIC 270
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
+ V G +D+AC + + M + G P+ L+ AGK D L K++ S
Sbjct: 271 IRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSH 330
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKK--WNE 517
K P I + LG+ K W+E
Sbjct: 331 K--PDRVTYITMLDKFSDCGDLGRVKEFWSE 359
>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
Length = 353
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++++++ G P SY P L FC +DKA + + M+ G YP+ LL
Sbjct: 116 ALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLT 175
Query: 466 VSVEAGKGDRVYYLLHKLR----TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIK 521
+G+ D LLH+L+ V + D + K +KEA L + ++ L
Sbjct: 176 ALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQP 235
Query: 522 DTM 524
D +
Sbjct: 236 DII 238
>gi|334185040|ref|NP_186914.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546752|sp|P0C896.1|PP209_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g02650, mitochondrial; Flags: Precursor
gi|332640323|gb|AEE73844.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 576
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G AFD+ + + G P ++Y L C +D ACSV E ML+ GV E +
Sbjct: 244 LGKSKAAFDVFSKTEEFGFTPNAKTYYLTLEALCKRSFMDWACSVCEKMLKSGVLSEGEQ 303
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492
+ ++ + GK + Y + +T + + P
Sbjct: 304 MGNIITWFCKEGKAEEAYSVYELAKTKEKSLPP 336
>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
Length = 584
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++++++ G +P SY P L FC +DKA + + M+ G YP+ LL
Sbjct: 319 ALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLT 378
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSP------STADVIAKWFNSKEAARLGKKKWNESL 519
+G+ D LLH+L+ + +P + D + K +KEA L + ++ L
Sbjct: 379 ALCRSGEVDVAVELLHQLKD--KGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGL 436
Query: 520 IKDTM 524
D +
Sbjct: 437 QPDII 441
>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
Length = 457
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++++++ G P SY P L FC +DKA + + M+ G YP+ LL
Sbjct: 191 ALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLT 250
Query: 466 VSVEAGKGDRVYYLLHKLR----TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIK 521
+G+ D LLH+L+ V + D + K +KEA L + ++ L
Sbjct: 251 ALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQP 310
Query: 522 DTM 524
D +
Sbjct: 311 DII 313
>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g19440, chloroplastic-like [Cucumis sativus]
Length = 799
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
LS K F++ E++ M P + S T V G + A ++ +M+ LGI
Sbjct: 193 LSSLVKANEFEKCCEVFRVMSEGACP-DVFSFTNVINALCKGGKMENAIELFMKMEKLGI 251
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478
+P + +Y ++ C NG +D A ++E M GV P AL+ ++ D+V +
Sbjct: 252 SPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNH 311
Query: 479 LLHKL 483
+L ++
Sbjct: 312 ILDEM 316
>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
Length = 845
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G+ + AF ++ M S+GI P YG + +C NG +D A +V ML GV P
Sbjct: 577 VGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVL 636
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVI 498
+L +A + + H++ S VS T V+
Sbjct: 637 YSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVV 675
>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 603
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A D++++M G P SY P L FC +D+A E M+ G YP+ LL
Sbjct: 368 AIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLT 427
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSP------STADVIAKWFNSKEAARLGKKKWNESL 519
+ GK D +L++L S + SP + D + K ++ AA L ++ + L
Sbjct: 428 ALCKDGKADAAVEILNQL--SSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGL 485
Query: 520 IKDTMENKGGGWHGLGWLGK 539
D + GLG GK
Sbjct: 486 KPDII-TYSTLLRGLGCEGK 504
>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
Length = 808
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G+ + AF ++ M S+GI P YG + +C NG +D A +V ML GV P
Sbjct: 500 VGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVL 559
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVI 498
+L +A + + H++ S VS T V+
Sbjct: 560 YSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVV 598
>gi|6957728|gb|AAF32472.1| hypothetical protein [Arabidopsis thaliana]
Length = 1077
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G AFD+ + + G P ++Y L C +D ACSV E ML+ GV E +
Sbjct: 745 LGKSKAAFDVFSKTEEFGFTPNAKTYYLTLEALCKRSFMDWACSVCEKMLKSGVLSEGEQ 804
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492
+ ++ + GK + Y + +T + + P
Sbjct: 805 MGNIITWFCKEGKAEEAYSVYELAKTKEKSLPP 837
>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 554
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++++++ G P SY P L FC +DKA + + M+ G YP+ LL
Sbjct: 317 ALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLT 376
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSP------STADVIAKWFNSKEAARLGKKKWNESL 519
+G+ D LLH+L+ + +P + D + K +KEA L + ++ L
Sbjct: 377 ALCRSGEVDVAVELLHQLKD--KGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGL 434
Query: 520 IKDTM 524
D +
Sbjct: 435 QPDII 439
>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
Length = 844
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G+ + AF ++ M S+GI P YG + +C NG +D A +V ML GV P
Sbjct: 576 VGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVL 635
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVI 498
+L +A + + H++ S VS T V+
Sbjct: 636 YSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVV 674
>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 556
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A +++ ++ G P SY P L FC +D+A + E M+ G YP+ LL
Sbjct: 311 AMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLT 370
Query: 466 VSVEAGKGDRVYYLLHKLR----TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIK 521
G+ D LLH+L+ T V + D + K ++EA L + + L
Sbjct: 371 ALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQP 430
Query: 522 DTM 524
D +
Sbjct: 431 DII 433
>gi|15222150|ref|NP_172763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200670|sp|Q9SAD9.1|PPR40_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g13040, mitochondrial; Flags: Precursor
gi|4850387|gb|AAD31057.1|AC007357_6 F3F19.6 [Arabidopsis thaliana]
gi|332190841|gb|AEE28962.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 517
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 54/104 (51%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
++ + ++E+M + MN + T++ + + G+ +A ++ +M LG++P Y
Sbjct: 342 RKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTI 401
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
L C +G+VDKA V M+EH + P+ +L+ +G+
Sbjct: 402 LDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGR 445
>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Cucumis sativus]
Length = 822
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
LS K F++ E++ M P + S T V G + A ++ +M+ LGI
Sbjct: 216 LSSLVKANEFEKCCEVFRVMSEGACP-DVFSFTNVINALCKGGKMENAIELFMKMEKLGI 274
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478
+P + +Y ++ C NG +D A ++E M GV P AL+ ++ D+V +
Sbjct: 275 SPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNH 334
Query: 479 LLHKLRTS 486
+L ++ S
Sbjct: 335 VLDEMIGS 342
>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
Length = 864
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G+ + AF ++ M S+GI P YG + +C NG +D A +V ML GV P
Sbjct: 556 VGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVL 615
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVI 498
+L +A + + H++ S VS T V+
Sbjct: 616 YSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVV 654
>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
Length = 740
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G+ + AF ++ M S+GI P YG + +C NG +D A +V ML GV P
Sbjct: 414 VGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVL 473
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVI 498
+L +A + + H++ S VS T V+
Sbjct: 474 YSIILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVV 512
>gi|414871694|tpg|DAA50251.1| TPA: hypothetical protein ZEAMMB73_705675 [Zea mays]
Length = 1161
Score = 48.1 bits (113), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 379 CLDEVP--MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436
CL ++P ++E + A+ G D A D+ ++M P + +Y LS FC G
Sbjct: 635 CLLDIPFAIDEKTFNALLLGICRYGTLDEALDLCEKMIKNNCLPDIHTYTILLSGFCRKG 694
Query: 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+ A + + MLE GV P+ LL + G+ Y+ H++
Sbjct: 695 KILPALVILQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFHEI 741
>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
Length = 748
Score = 48.1 bits (113), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G+ + AF ++ M S+GI P YG + +C NG +D A +V ML GV P
Sbjct: 486 VGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVL 545
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVI 498
+L +A + + H++ S VS T V+
Sbjct: 546 YNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQTYGVV 584
>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 739
Score = 48.1 bits (113), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+GD ++A D+ +RM G +P +R+Y +S FC + +D+A + M++ G+ P
Sbjct: 225 VGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVT 284
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTS 486
AL++ G+ D Y LL + S
Sbjct: 285 YTALIQGQCSDGQLDCAYRLLQSMENS 311
>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
Length = 502
Score = 48.1 bits (113), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
KK + + ++E+M N + V R G+ D A + ++RMK+ G P +
Sbjct: 333 CKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPNV 392
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHM 448
++Y A+ FC+ GDV+K S+ E M
Sbjct: 393 QTYNVAIRYFCDAGDVEKGLSMFEKM 418
>gi|297808491|ref|XP_002872129.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297317966|gb|EFH48388.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 588
Score = 48.1 bits (113), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF----DMVKRMKSLGINPRLRSY 425
+ E++++M VP + + R S G+ A+ DMVKR G+NP + +Y
Sbjct: 281 QALEVWKEMSQKNVPTDSVVYNVIIRGLCSSGNMVAAYGFMCDMVKR----GVNPDVFTY 336
Query: 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475
+S C G D AC + M GV P++ + +++ G DR
Sbjct: 337 NTLISALCKAGKFDVACDLHGTMQNVGVAPDQISYKVIIQGLCIQGDVDR 386
>gi|302815817|ref|XP_002989589.1| hypothetical protein SELMODRAFT_21981 [Selaginella moellendorffii]
gi|300142767|gb|EFJ09465.1| hypothetical protein SELMODRAFT_21981 [Selaginella moellendorffii]
Length = 368
Score = 48.1 bits (113), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458
+MG D F +VK M+ G+ P Y L FC + +D AC + E M+E G YP+
Sbjct: 231 AMGMTDEGFVVVKAMEERGVKPDAVVYTIFLYAFCRSARLDDACRLLEIMVEAGCYPDVI 290
Query: 459 ELEALLRVSVEAGK 472
LL AG+
Sbjct: 291 SYNTLLFALCSAGQ 304
>gi|15226343|ref|NP_178283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216739|sp|Q9ZUA2.1|PP141_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01740
gi|4220475|gb|AAD12698.1| hypothetical protein [Arabidopsis thaliana]
gi|330250397|gb|AEC05491.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
KK QR E+Y +M D V N T + GD D A + +M + G+ +
Sbjct: 244 CKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDI 303
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
+YG +S C NG + +A + E M + + P+ ++ ++G+ + HK
Sbjct: 304 TAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHK 363
Query: 483 L 483
L
Sbjct: 364 L 364
>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 892
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
F + + + +C P+N AV G D A ++ K MK+ GI P + SY
Sbjct: 261 FGVAWRLIQNLCRKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSI 320
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
+ FC G VD+A V + M G+ P L+ + G+ D+ + +++ S
Sbjct: 321 LIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNS 379
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D A ++ K M++ GI P + SY + FC G VDKA V E M G+ P+
Sbjct: 329 GRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSY 388
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST---ADVIAKWFNSKEAA 508
L+ G D ++ ++ SPS +I ++ SK+ A
Sbjct: 389 SILIDGFCRKGDMDSAIKFWEEMTSN--NFSPSAFNYCSLIKGYYKSKQFA 437
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 69/154 (44%), Gaps = 5/154 (3%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
+S AK+ ++ ++ KM + N + T + + +S D+A+ + K MK +
Sbjct: 532 ISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMKESRV 591
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478
P +Y ++ FCN G++ +A ++ + M G P + ++ K ++ +
Sbjct: 592 YPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHK 651
Query: 479 LLHKLRTSVRKVSPST---ADVIAKWFNSKEAAR 509
L K++ R V P +IA + N+ E R
Sbjct: 652 LYEKMKE--RGVYPDQILYTMLIAAFCNTGEMNR 683
>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
Length = 695
Score = 47.8 bits (112), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + F ++ M+ GI + S+G + FC NG + +A ++ + M+ V P
Sbjct: 454 GQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVY 513
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWF--NSK--EAARLGKKKWN 516
+++ +E+G ++ + L+ K+++S S T +++ K NS+ EA L N
Sbjct: 514 NSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTN 573
Query: 517 ESLIKDTM 524
+ L D +
Sbjct: 574 QGLRPDVV 581
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + AF +V++MKS G++ + +Y L C N +D+A + ++ G+ P+
Sbjct: 524 GGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSY 583
Query: 461 EALLRVSVEAGKGDRVYYLL---HK--LRTSVRKVSP 492
++ G DR LL HK +R ++R P
Sbjct: 584 NTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHP 620
>gi|294945390|ref|XP_002784656.1| pentatricopeptide repeat-containing protein, putative [Perkinsus
marinus ATCC 50983]
gi|239897841|gb|EER16452.1| pentatricopeptide repeat-containing protein, putative [Perkinsus
marinus ATCC 50983]
Length = 692
Score = 47.8 bits (112), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
R F+IY++M +++P+N S + G + D+ + M GI P + +Y +
Sbjct: 378 RVFDIYQEMRSNKIPLNTVSFNTIMDACARSGSMERVSDIFREMDEQGIEPDIITYSTVV 437
Query: 430 SVFCNNGDVDKACSVEEHMLEHGV---------YPEEPELEALLRVSVEAGKGDRVYYLL 480
+C GDVD A SV M GV P+E +LL + + D+ LL
Sbjct: 438 KGYCLAGDVDTAFSVLRDM--SGVSRRGGRKKFAPDEIMYNSLLDGCAKQHRVDQALQLL 495
Query: 481 HKLRTSVRKVSPSTADVIAKWF 502
++R + S T ++ K
Sbjct: 496 DEMRANGVAPSNYTLSILVKLL 517
>gi|298707411|emb|CBJ30040.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 564
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 1/143 (0%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
+ R ++E+M + +E S TA G +MA ++ M+ GI P +RS+
Sbjct: 303 WARALAVHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRSFST 362
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS- 486
A+S +A ++ M E GV P E A + AG+ LL K+ ++
Sbjct: 363 AISACGKGQQWGRAVALLREMEEVGVSPNEVSFNAAIDACGRAGQWRAALSLLDKMSSAG 422
Query: 487 VRKVSPSTADVIAKWFNSKEAAR 509
V + + + VIA KE AR
Sbjct: 423 VPRGTITYNAVIAACGKGKEWAR 445
>gi|359495078|ref|XP_002269066.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g20740-like [Vitis vinifera]
Length = 1294
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
F+ ++ E M + P +E + RM + G + + ++MK GI PR+ Y
Sbjct: 707 FRAADQVPELMNMQGKPPSEKQFEILIRMHIDANRGLRVYYVYEKMKKFGIKPRVFLYNR 766
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
+ G +D A SV E E G+ E L++ +AG+ D V + ++R
Sbjct: 767 IMDGLVKTGHLDLAMSVYEDFKEDGLVEESVTYMILVKGLCKAGRIDEVLEVWEEMRKD- 825
Query: 488 RKVSPSTADVIA 499
KV P DV+A
Sbjct: 826 -KVEP---DVMA 833
>gi|441595336|ref|XP_004087234.1| PREDICTED: mitochondrial ribonuclease P protein 3 [Nomascus
leucogenys]
gi|441595339|ref|XP_004087235.1| PREDICTED: mitochondrial ribonuclease P protein 3 [Nomascus
leucogenys]
Length = 211
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 85/207 (41%), Gaps = 25/207 (12%)
Query: 585 KRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWP 644
K+ ++F+ ++ PF+ V+D NV + F AR + + + + +
Sbjct: 12 KKTTPQELKRFENFIKSCPPFDIVIDGLNVA----KMFPKARESQFLLNVVSQLAKQNLR 67
Query: 645 LIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVT 702
L+VL R+ + Q + E K A +A S DD + LYA + C +T
Sbjct: 68 LLVL-GRKHMLRQCSQWRKDEMKEVQKQASCFFAD-NISEDDPFLLYATLHSGNHCRFIT 125
Query: 703 NDEMRDHTFQLL---GNDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNW 757
D MRDH L F +W++ HQ+ F + F V+Q + +W
Sbjct: 126 KDLMRDHKACLPDAKTQRLFFKWQQGHQLAIINRFPGSKLTFQHILSYDTVVQ-TTGDSW 184
Query: 758 HIPIASKQDYDDEER-------RWLCV 777
HIP D D ER +WLC+
Sbjct: 185 HIPY----DEDLVERYSYEVPTKWLCL 207
>gi|426376683|ref|XP_004055123.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 4
[Gorilla gorilla gorilla]
gi|426376685|ref|XP_004055124.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 5
[Gorilla gorilla gorilla]
Length = 211
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 25/200 (12%)
Query: 592 FQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
++F+ ++ PF+ V+D NV + F R + ++ + + + L+VL R
Sbjct: 19 LKRFENFIKSRPPFDVVIDGLNVA----KMFPKVRESQLLLNVVSQLAKRNLRLLVL-GR 73
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDH 709
+ + Q + E K A +A S DD + LYA + C +T D MRDH
Sbjct: 74 KHMLRRSSQWSRDEMEEVQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLMRDH 132
Query: 710 TFQLL---GNDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASK 764
L F +W++ HQ+ F + F V+Q + +WHIP
Sbjct: 133 KACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQHILSYDTVVQ-TTGDSWHIPY--- 188
Query: 765 QDYDDEER-------RWLCV 777
D D ER +WLC+
Sbjct: 189 -DEDLVERCSYEVPTKWLCL 207
>gi|297804088|ref|XP_002869928.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315764|gb|EFH46187.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 731
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
MGD + + MK G P SY AL F + GDV +ACS E ++E P +
Sbjct: 524 MGDIQKSLSLFYEMKEFGFEPDSSSYSIALCCFVDKGDVQEACSCHEKIIEMSRVPSKAA 583
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSV 487
+L + + G+ D V L+ + +V
Sbjct: 584 YLSLTKGLCQIGEIDAVMLLVRECLGNV 611
Score = 40.8 bits (94), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 55/134 (41%)
Query: 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443
P +E + RM G + + ++MK G PR+ Y + NG D A +
Sbjct: 194 PPSEKQFEILIRMHADNRRGLRVYYVYEKMKKFGFKPRVFLYNRIMDALVKNGYFDLALA 253
Query: 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFN 503
V E E G+ E L++ +AG+ + + +L ++R ++ K + K
Sbjct: 254 VYEDFKEDGLVEESTTFMILVKGLCKAGRIEEMLEILQRMRENLCKPDVFAYTAMIKTLV 313
Query: 504 SKEAARLGKKKWNE 517
S+ + W+E
Sbjct: 314 SEGNLDASLRVWDE 327
>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 47.8 bits (112), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + A +++K MK G+ P SY P ++ FC G +D A E M+ G P+
Sbjct: 343 GKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNY 402
Query: 461 EALLRVSVEAGKGDRVYYLLHKL 483
+L + GK D+ + KL
Sbjct: 403 NTVLATLCKNGKADQALEIFGKL 425
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 90/223 (40%), Gaps = 12/223 (5%)
Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPD-----DQSRKKDWSIDNQDADEIRLSEDAKK 365
E L +F + + L++G + R D D+ R KD+S D + I + +
Sbjct: 144 EILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYN-IMIGSLCSR 202
Query: 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425
++ +++ D + T + M G D A ++ M S G+ P + +Y
Sbjct: 203 GKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTY 262
Query: 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485
+ C G VD+A + ++ G P+ LLR + GK + L+ K+ +
Sbjct: 263 NTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFS 322
Query: 486 SVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKG 528
K P +V+ R GK + +L+K M+ KG
Sbjct: 323 --EKCDP---NVVTYSILITTLCRDGKIEEAMNLLK-LMKEKG 359
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 11/155 (7%)
Query: 359 LSEDAKKY-----AFQR------GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF 407
L+ DA Y AF R E E M D + + V G D A
Sbjct: 360 LTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQAL 419
Query: 408 DMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467
++ ++ +G +P SY S ++GD +A + M+ +G+ P+E +++
Sbjct: 420 EIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCL 479
Query: 468 VEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWF 502
G D+ + LL +R+ S T +++ F
Sbjct: 480 CREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGF 514
>gi|375493518|ref|NP_001243609.1| mitochondrial ribonuclease P protein 3 isoform 4 [Homo sapiens]
gi|375493520|ref|NP_001243610.1| mitochondrial ribonuclease P protein 3 isoform 4 [Homo sapiens]
gi|28071112|emb|CAD61937.1| unnamed protein product [Homo sapiens]
gi|119586286|gb|EAW65882.1| KIAA0391, isoform CRA_c [Homo sapiens]
Length = 211
Score = 47.8 bits (112), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 25/200 (12%)
Query: 592 FQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
++F+ ++ PF+ V+D NV + F R + ++ + + + L+VL R
Sbjct: 19 LKRFENFIKSRPPFDVVIDGLNVA----KMFPKVRESQLLLNVVSQLAKRNLRLLVL-GR 73
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDH 709
+ + Q + E K A +A S DD + LYA + C +T D MRDH
Sbjct: 74 KHMLRRSSQWSRDEMEEVQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLMRDH 132
Query: 710 TFQLL---GNDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASK 764
L F +W++ HQ+ F + F V+Q + +WHIP
Sbjct: 133 KACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQ-TTGDSWHIPY--- 188
Query: 765 QDYDDEER-------RWLCV 777
D D ER +WLC+
Sbjct: 189 -DEDLVERCSCEVPTKWLCL 207
>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Cucumis sativus]
gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Cucumis sativus]
Length = 534
Score = 47.8 bits (112), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
GD A + + MK GI+P + +Y + C +G + +A V ML+ G P
Sbjct: 266 GDISEAESVFREMKMAGISPNVYTYSIVIDALCRSGQITRAHDVFAEMLDAGCNPNSVTF 325
Query: 461 EALLRVSVEAGKGDRVYYLLHKLR 484
L+RV + AG+ ++V + ++++
Sbjct: 326 NNLIRVHLRAGRTEKVLQVYNQMK 349
>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
Length = 602
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + A +++K MK G+ P SY P ++ FC G +D A E M+ G P+
Sbjct: 347 GKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNY 406
Query: 461 EALLRVSVEAGKGDRVYYLLHKL 483
+L + GK D+ + KL
Sbjct: 407 NTVLATLCKNGKADQALEIFGKL 429
Score = 40.0 bits (92), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 46/102 (45%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D A ++ ++ +G +P SY S ++GD +A + M+ +G+ P+E
Sbjct: 417 GKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITY 476
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWF 502
+++ G D + LL +R+ S T +++ F
Sbjct: 477 NSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGF 518
Score = 39.7 bits (91), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 89/223 (39%), Gaps = 12/223 (5%)
Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPD-----DQSRKKDWSIDNQDADEIRLSEDAKK 365
E L +F + + L++G + R D D+ R KD+S D + I + +
Sbjct: 148 EILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYN-IMIGSLCSR 206
Query: 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425
++ ++ D + T + M G D A ++ M S G+ P + +Y
Sbjct: 207 GKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTY 266
Query: 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485
+ C G VD+A + ++ G P+ LLR + GK + L+ K+ +
Sbjct: 267 NTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFS 326
Query: 486 SVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKG 528
K P +V+ R GK + +L+K M+ KG
Sbjct: 327 --EKCDP---NVVTYSILITTLCRDGKIEEAMNLLK-LMKEKG 363
>gi|390566103|ref|ZP_10246615.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
gi|390170651|emb|CCF85958.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
Length = 146
Score = 47.8 bits (112), Expect = 0.027, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 14/136 (10%)
Query: 608 VVDAANVGLYS-QRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
+VD +NV + KP N + +R+ + + +++ + + H +DQP +
Sbjct: 12 IVDGSNVAYEGVPKGSKPELSNIL--AVRKALEKRGYDPVIIVDAALH-HVVDQP---SQ 65
Query: 667 IEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERH 726
IE + DA+ P G++ D++ L A + +V+NDE R + D FP W ++
Sbjct: 66 IEHLIDKDAILQAPAGTDADYFILETAGRMHAQVVSNDEYRPY------RDRFP-WIDKR 118
Query: 727 QVRFSFSDAGPEFYMP 742
+V F D E Y+P
Sbjct: 119 RVPFMIIDGQVELYLP 134
>gi|299116865|emb|CBN74977.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 724
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 9/160 (5%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPRLRSYG 426
FQ ++ ++M V N AS +V MG +++RM+ G I P +RS+
Sbjct: 304 FQLAIDLLDRMLATGVSPNVASYNSVMTACDHMGQWRQVLGLLRRMEETGGIQPSVRSFN 363
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD-RVYYLLHKLRT 485
A+ ++GD + A ++ M G+ P +++ +AG+ D V LL ++
Sbjct: 364 IAIKAVGDSGDCEAALALFREMSATGIVPNMDSYSTVIKAFNQAGRVDGTVSGLLEEMSE 423
Query: 486 SVRKVSPSTADVI---AKWFNSKEAA---RLGKKKWNESL 519
S+ KV+P ++ + S +A R KKW +++
Sbjct: 424 SM-KVNPEADTIVIGDSTIHTSPTSAGMERQAGKKWRQTV 462
>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04760, chloroplastic; Flags: Precursor
gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 602
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + A +++K MK G+ P SY P ++ FC G +D A E M+ G P+
Sbjct: 347 GKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNY 406
Query: 461 EALLRVSVEAGKGDRVYYLLHKL 483
+L + GK D+ + KL
Sbjct: 407 NTVLATLCKNGKADQALEIFGKL 429
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 89/223 (39%), Gaps = 12/223 (5%)
Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPD-----DQSRKKDWSIDNQDADEIRLSEDAKK 365
E L +F + + L++G + R D D+ R KD+S D + I + +
Sbjct: 148 EILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYN-IMIGSLCSR 206
Query: 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425
++ ++ D + T + M G D A ++ M S G+ P + +Y
Sbjct: 207 GKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTY 266
Query: 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485
+ C G VD+A + ++ G P+ LLR + GK + L+ K+ +
Sbjct: 267 NTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFS 326
Query: 486 SVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKG 528
K P +V+ R GK + +L+K M+ KG
Sbjct: 327 --EKCDP---NVVTYSILITTLCRDGKIEEAMNLLK-LMKEKG 363
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 46/102 (45%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D A ++ ++ +G +P SY S ++GD +A + M+ +G+ P+E
Sbjct: 417 GKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITY 476
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWF 502
+++ G D + LL +R+ S T +++ F
Sbjct: 477 NSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGF 518
>gi|18420848|ref|NP_568460.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75154065|sp|Q8L6Y3.1|PP396_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g24830
gi|22655280|gb|AAM98230.1| putative protein [Arabidopsis thaliana]
gi|30725398|gb|AAP37721.1| At5g24830 [Arabidopsis thaliana]
gi|332005984|gb|AED93367.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 593
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF----DMVKRMKSLGINPRLRSY 425
+ E++++M VP + + R S G+ A+ DMVKR G+NP + +Y
Sbjct: 283 QALEVWKEMSQKNVPADSVVYNVIIRGLCSSGNMVAAYGFMCDMVKR----GVNPDVFTY 338
Query: 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
+S C G D+AC + M GV P++ + +++
Sbjct: 339 NTLISALCKEGKFDEACDLHGTMQNGGVAPDQISYKVIIQ 378
>gi|449667851|ref|XP_002162768.2| PREDICTED: mitochondrial ribonuclease P protein 3-like [Hydra
magnipapillata]
Length = 184
Score = 47.4 bits (111), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 25/186 (13%)
Query: 614 VGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL---------HNRRITGHKMDQPVNR 664
+G Q+ F+ +V AVV Q F KK ++++ N T K R
Sbjct: 1 MGYQGQQGFEINKVQAVV----QYFLDKKKRILLVCADSMNQKYLNSTKTIEKASAIRFR 56
Query: 665 ALIEKWKNADALYATPTGSNDDWYWLY--AAIKFKCLLVTNDEMRDHTFQLLGNDF---F 719
+E LY + + DD+ LY A F+ +V+ND R+H QL+ D F
Sbjct: 57 KTMEYLNENCTLYFSESSLVDDYCLLYTIAYHNFELKIVSNDLFRNH-LQLMDADTRTAF 115
Query: 720 PRWKERHQ---VRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEER-RWL 775
RW+ +Q +RF D+ P F +V +Q++ NWH+PI++ + +ER WL
Sbjct: 116 KRWQLANQMRPLRFLIDDS-PIFQPLANYNVTLQQN-GDNWHVPISNSVFREKKERSSWL 173
Query: 776 CVTRAN 781
C + +
Sbjct: 174 CFQKID 179
>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
Length = 551
Score = 47.4 bits (111), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 79/173 (45%), Gaps = 8/173 (4%)
Query: 297 SYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPD-----DQSRKKDWSIDN 351
S + D+ F E E G + H + L++G + ER + +Q +K + ++
Sbjct: 318 SGKCDEAIKVFYEMEASGCMPSPH--VYCMLINGLGSEERLDEALKYFEQYKKSGFPMEV 375
Query: 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVK 411
+ + + + F+ F++ ++M ++ N + + + + A+++ +
Sbjct: 376 PTCNAV-VGAYCRASKFEHAFKMVDEMRECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQ 434
Query: 412 RMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
RM G P+L +Y + +FC+NG VD A +V + M E GV P AL+
Sbjct: 435 RMGMDGCEPQLNTYTMMVGMFCSNGRVDMALNVWKQMGERGVLPCMHMFSALI 487
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%)
Query: 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMV 410
N ++ L K F+ + ++++M +D + T + M S G DMA ++
Sbjct: 409 NSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGMFCSNGRVDMALNVW 468
Query: 411 KRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470
K+M G+ P + + ++ C +++AC + ML+ G+ P L VE
Sbjct: 469 KQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVEG 528
Query: 471 GK 472
G+
Sbjct: 529 GR 530
>gi|26449752|dbj|BAC41999.1| unknown protein [Arabidopsis thaliana]
Length = 593
Score = 47.4 bits (111), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF----DMVKRMKSLGINPRLRSY 425
+ E++++M VP + + R S G+ A+ DMVKR G+NP + +Y
Sbjct: 283 QALEVWKEMSQKNVPADSVVYNVIIRGLCSSGNMVAAYGFMCDMVKR----GVNPDVFTY 338
Query: 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
+S C G D+AC + M GV P++ + +++
Sbjct: 339 NTLISALCKEGKFDEACDLHGTMQNGGVAPDQISYKVIIQ 378
>gi|226505250|ref|NP_001147833.1| GTP binding protein [Zea mays]
gi|195614010|gb|ACG28835.1| GTP binding protein [Zea mays]
gi|413952711|gb|AFW85360.1| GTP binding protein [Zea mays]
Length = 547
Score = 47.4 bits (111), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 8/173 (4%)
Query: 297 SYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPD-----DQSRKKDWSIDN 351
S + D+ F E E G + H + L++G + ER + + +K + ++
Sbjct: 314 SGKCDEAIKVFYEMEASGCMPSPH--VYCMLINGLGSEERLDEALKYFEHYKKSGFPMEV 371
Query: 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVK 411
+ + + + FQ F++ ++M +V N + + + + A+++ +
Sbjct: 372 PTCNAV-VGAYCRASKFQHAFKMVDEMRKCKVGPNSRTYDVILHYLIKSQKFEEAYNIFQ 430
Query: 412 RMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
RM G P+L +Y + +FC+NG VD A V + M E GV P AL+
Sbjct: 431 RMGIDGCEPQLNTYTMMVGMFCSNGRVDMALKVWKQMGEKGVLPCMHMFSALI 483
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
Query: 340 DQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS 399
D+ RK +++ D I L K F+ + I+++M +D + T + M S
Sbjct: 395 DEMRKCKVGPNSRTYDVI-LHYLIKSQKFEEAYNIFQRMGIDGCEPQLNTYTMMVGMFCS 453
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
G DMA + K+M G+ P + + ++ C +++AC + ML+ G+ P
Sbjct: 454 NGRVDMALKVWKQMGEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQL 513
Query: 460 LEALLRVSVEAGK 472
L V+ G+
Sbjct: 514 FSNLKEALVQGGR 526
>gi|294883700|ref|XP_002771031.1| pentatricopeptide repeat-containing protein, putative [Perkinsus
marinus ATCC 50983]
gi|239874237|gb|EER02847.1| pentatricopeptide repeat-containing protein, putative [Perkinsus
marinus ATCC 50983]
Length = 941
Score = 47.4 bits (111), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
R F+IY++M +++P+N S + G + D+ + M GI P + +Y +
Sbjct: 545 RVFDIYQEMRSNKIPLNTVSFNTIMDACARSGSMERVSDIFREMDEQGIEPDIITYSTVV 604
Query: 430 SVFCNNGDVDKACSVEEHMLEHGV---------YPEEPELEALLRVSVEAGKGDRVYYLL 480
+C GDVD A SV M GV P+E +LL + + D+ LL
Sbjct: 605 KGYCLAGDVDTAFSVLRDM--SGVSRRGGRKKFAPDEIMYNSLLDGCAKQHRVDQALQLL 662
Query: 481 HKLRTSVRKVSPSTADVIAKWFN 503
++R + S T ++ K
Sbjct: 663 DEMRANGVAPSNYTLSILVKLLG 685
>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 47.4 bits (111), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 368 FQRGFEIYEKMC-LDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
F+ G E+ +M VP +EA+++ + G+ AFD+V ++K G+ P L Y
Sbjct: 301 FEAGEEMMNEMIEFGFVP-SEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYN 359
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL-RT 485
++ C +G +D+A S+ +M G++P + L+ + GK D + L K+
Sbjct: 360 ALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEV 419
Query: 486 SVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
++ + +I+ +LGK + +SL + + N
Sbjct: 420 GIKATVYPYSSLISG------HCKLGKLRAAKSLFDEMIAN 454
>gi|297598524|ref|NP_001045762.2| Os02g0127600 [Oryza sativa Japonica Group]
gi|255670569|dbj|BAF07676.2| Os02g0127600 [Oryza sativa Japonica Group]
Length = 886
Score = 47.4 bits (111), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G ++A + + LG+NP Y + C GD ++AC V E + G +P
Sbjct: 398 GLVEVAAHLYRSRMELGVNPNKDVYNNLIRALCRVGDTEEACLVLEQAMAEGYFPGRQTF 457
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWF 502
V + GK DRV LL + ++++ + T V+AK+
Sbjct: 458 TMFANVLCQEGKLDRVRVLLDR---ALKQEACPTDSVLAKYL 496
>gi|294883698|ref|XP_002771030.1| pentatricopeptide repeat-containing protein, putative [Perkinsus
marinus ATCC 50983]
gi|239874236|gb|EER02846.1| pentatricopeptide repeat-containing protein, putative [Perkinsus
marinus ATCC 50983]
Length = 994
Score = 47.4 bits (111), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
R F+IY++M +++P+N S + G + D+ + M GI P + +Y +
Sbjct: 535 RVFDIYQEMRSNKIPLNTVSFNTIMDACARSGSMERVSDIFREMDEQGIEPDIITYSTVV 594
Query: 430 SVFCNNGDVDKACSVEEHMLEHGV---------YPEEPELEALLRVSVEAGKGDRVYYLL 480
+C GDVD A SV M GV P+E +LL + + D+ LL
Sbjct: 595 KGYCLAGDVDTAFSVLRDM--SGVSRRGGRKKFAPDEIMYNSLLDGCAKQHRVDQALQLL 652
Query: 481 HKLRTSVRKVSPSTADVIAKWFN 503
++R + S T ++ K
Sbjct: 653 DEMRANGVAPSNYTLSILVKLLG 675
>gi|218189972|gb|EEC72399.1| hypothetical protein OsI_05688 [Oryza sativa Indica Group]
Length = 831
Score = 47.4 bits (111), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G ++A + + LG+NP Y + C GD ++AC V E + G +P
Sbjct: 326 GLVEVAAHLYRSRMELGVNPNKDVYNNLIRALCRVGDTEEACLVLEQAMAEGYFPGRQTF 385
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWF 502
V + GK DRV LL + ++++ + T V+AK+
Sbjct: 386 TMFANVLCQEGKLDRVRVLLDR---ALKQEACPTDSVLAKYL 424
>gi|15237467|ref|NP_199470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180372|sp|Q9LS25.1|PP420_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g46580, chloroplastic; Flags: Precursor
gi|8885599|dbj|BAA97529.1| unnamed protein product [Arabidopsis thaliana]
gi|332008017|gb|AED95400.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 711
Score = 47.4 bits (111), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 4/183 (2%)
Query: 364 KKYAFQRGFEIYEKMCL----DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
K F R F++ E+M L D V ++ + + + A + A + +RM G+
Sbjct: 194 KSLRFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLM 253
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
P +Y L V+ +G V++ S+ E + G P+ L ++ EAG D + Y+
Sbjct: 254 PDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYV 313
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539
L ++++ K + + + + L + +NE L N+ + GK
Sbjct: 314 LQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGK 373
Query: 540 GKW 542
+W
Sbjct: 374 ARW 376
>gi|297844198|ref|XP_002889980.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335822|gb|EFH66239.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 517
Score = 47.4 bits (111), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 54/104 (51%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
++ ++++E+M + N + T++ + + G+ +A ++ +M LG++P Y
Sbjct: 342 KKAYKLFEEMRQKGIVTNVVTFTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTI 401
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
L C +G+VDKA + M+EH + P+ +L+ +G+
Sbjct: 402 LDHLCKSGNVDKAYGIFNDMIEHEITPDAISYNSLISGLCRSGR 445
>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g20300, mitochondrial; Flags: Precursor
gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
contains multiple PPR PF|01535 repeats [Arabidopsis
thaliana]
gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 537
Score = 47.4 bits (111), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G+ A + K MK GI P + +Y + C G + +A V ML+ G P
Sbjct: 269 GEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITF 328
Query: 461 EALLRVSVEAGKGDRVYYLLHKLR 484
L+RV V+AG+ ++V + ++++
Sbjct: 329 NNLMRVHVKAGRTEKVLQVYNQMK 352
>gi|41053083|dbj|BAD08027.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 903
Score = 47.4 bits (111), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G ++A + + LG+NP Y + C GD ++AC V E + G +P
Sbjct: 398 GLVEVAAHLYRSRMELGVNPNKDVYNNLIRALCRVGDTEEACLVLEQAMAEGYFPGRQTF 457
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWF 502
V + GK DRV LL + ++++ + T V+AK+
Sbjct: 458 TMFANVLCQEGKLDRVRVLLDR---ALKQEACPTDSVLAKYL 496
>gi|301098918|ref|XP_002898551.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262104976|gb|EEY63028.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 875
Score = 47.4 bits (111), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 5/143 (3%)
Query: 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442
VP N S G A ++ RM+ G+NP + Y + G V A
Sbjct: 266 VPPNAKSYMLYATALGENGQAAHAVRVIGRMRERGVNPSVAVYNAVMRACSKAGRVPWAY 325
Query: 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWF 502
+V E M G+ P+ L+ ++ G D+ + H +RT V + D +A
Sbjct: 326 NVMEKMQVAGLVPDRASFTILMNAAIAEGDIDKAFETFHLMRTHV-----AEPDEVAYTC 380
Query: 503 NSKEAARLGKKKWNESLIKDTME 525
AR G+ + +L++D +E
Sbjct: 381 CIHGCAREGRVERALNLLEDLLE 403
>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats [Arabidopsis thaliana]
gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 632
Score = 47.4 bits (111), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 5/158 (3%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ G E++ +M + N + T + D D A + K+M S+G++P + +Y
Sbjct: 415 EEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNIL 474
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L C NG + KA V E++ + P+ ++ +AGK + + L L S++
Sbjct: 475 LDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNL--SLK 532
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
VSP +VIA R G K+ +SL+K E+
Sbjct: 533 GVSP---NVIAYNTMISGFCRKGSKEEADSLLKKMKED 567
>gi|410048166|ref|XP_003952521.1| PREDICTED: mitochondrial ribonuclease P protein 3 [Pan troglodytes]
gi|410048168|ref|XP_003952522.1| PREDICTED: mitochondrial ribonuclease P protein 3 [Pan troglodytes]
Length = 211
Score = 47.4 bits (111), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 25/200 (12%)
Query: 592 FQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
++F+ ++ PF+ V+D NV + F R + ++ + + + L+VL R
Sbjct: 19 LKRFENFIKSRPPFDVVIDGLNVA----KMFPKVRESQLLLNVVSQLAKQNLRLLVL-GR 73
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDH 709
+ + Q + E K A +A S DD + LYA + C +T D MRDH
Sbjct: 74 KHMLRRSSQWSRDEMEEVQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLMRDH 132
Query: 710 TFQLL---GNDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASK 764
L F +W++ HQ+ F + F V+Q + +WHIP
Sbjct: 133 KACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQ-TTGDSWHIPY--- 188
Query: 765 QDYDDEER-------RWLCV 777
D D ER +WLC+
Sbjct: 189 -DEDLVERCSYEVPTKWLCL 207
>gi|255576918|ref|XP_002529344.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531164|gb|EEF33011.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 506
Score = 47.4 bits (111), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 6/144 (4%)
Query: 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431
++ +M L+ VP N S AV + G + A ++ M+++GI+P L + +S
Sbjct: 311 LRLFYQMQLESVPPNVTSWNAVILGFLRNGQVNKAKELFAEMQAVGIHPNLVTLTTLISG 370
Query: 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR-----VSVEAGKGDRVYYLLHKLRTS 486
+NG ++A ++ M E+G+ P + + S++ G+ Y L H L +
Sbjct: 371 LIHNGLGNEALAIFLKMQEYGIRPNITSIINTISACTDPASLQCGRAIHGYILRHDLWSQ 430
Query: 487 VRKVSPSTADVIAKWFNSKEAARL 510
+ V+ + A + AK N+++A R+
Sbjct: 431 I-PVANALATMYAKCGNTRQAKRV 453
>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 827
Score = 47.0 bits (110), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 406 AFDMVKRMKSLG--INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
A DMV+RM G +P + S+ + F G+V KAC++ M++ GV P+ ++
Sbjct: 214 ALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSI 273
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNS----KEAARLGKKKWNESL 519
+ +A D+ ++L ++ + T + I ++ KE+A++ +K ++ L
Sbjct: 274 VDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGL 333
Query: 520 IKDTM 524
I DT+
Sbjct: 334 IPDTV 338
>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 729
Score = 47.0 bits (110), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 50/116 (43%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++ + M GI P + +Y L FC G+V +A + M E G YP E L+
Sbjct: 221 ALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLIN 280
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIK 521
+ G+ + L+ ++ + +VSP T + + + K W E + +
Sbjct: 281 GLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTR 336
>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
Length = 908
Score = 47.0 bits (110), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 8/162 (4%)
Query: 368 FQRGFEIYEKMC-LDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
F+ G E+ ++M L VP +EA+++ + + MG + AF+++ ++ LG+ P L Y
Sbjct: 311 FEVGMEMMDEMIELGYVP-SEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYN 369
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
++ C G +++A + M E G+ P + L+ K D +Y +K+
Sbjct: 370 SMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKM--- 426
Query: 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKG 528
+ +T N + + GK K E L K+ M +KG
Sbjct: 427 IECGISATVYSYNSMINCQ--CKFGKMKMAELLFKE-MVDKG 465
>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900 [Vitis vinifera]
Length = 900
Score = 47.0 bits (110), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 368 FQRGFEIYEKMC-LDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
F+ G E+ +M VP +EA+++ + G+ AFD+V ++K G+ P L Y
Sbjct: 301 FEAGEEMMNEMIEFGFVP-SEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYN 359
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL-RT 485
++ C +G +D+A S+ +M G++P + L+ + GK D + L K+
Sbjct: 360 ALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEV 419
Query: 486 SVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
++ + +I+ +LGK + +SL + + N
Sbjct: 420 GIKATVYPYSSLISGH------CKLGKLRAAKSLFDEMIAN 454
>gi|340718776|ref|XP_003397839.1| PREDICTED: hypothetical protein LOC100652080 [Bombus terrestris]
Length = 506
Score = 47.0 bits (110), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 96/253 (37%), Gaps = 34/253 (13%)
Query: 542 WIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRE-----RNSSFQKFQ 596
W V+ T V C C E ++ + + E+ E+ I E Q F
Sbjct: 266 WSVNQT-VMLRLRCHKCKEDISQESISDKDYERLLEATKKKLIFNEMCYVTNAQEIQSFI 324
Query: 597 KWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRIT-- 654
++D P++ ++D N+ ++R+ K + ++Q F S K N++I
Sbjct: 325 NFIDKNKPYDLIIDGLNIMFLAKRSMKY----DLTYELKQIFKSYK-----EQNKKILII 375
Query: 655 --GHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFK--CLLVTNDEMRDHT 710
H V L ++ + Y S DD + LYAA K +++ D MR H
Sbjct: 376 ARKHMWKFIVKSGL----QSVNCFYV-QNSSKDDLFLLYAAFASKRNARIISKDLMRQHI 430
Query: 711 FQLLG---NDFFPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASKQDY 767
F L N F +W+ HQ + P +Q+ + +WHIP +
Sbjct: 431 FALQDLELNALFKKWQFSHQFVIDTKKGYMQLNAQFPIDATVQK-QNNSWHIPYVTNDRI 489
Query: 768 D----DEERRWLC 776
++W+C
Sbjct: 490 SRMRHTSTKKWMC 502
>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
Length = 948
Score = 47.0 bits (110), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
++ +DM+ R GI+P + ++G + FC +VD ACS+ M +HG P + L
Sbjct: 186 NVFYDMLSR----GISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQML 241
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA-DVI---AKWFNSKEAARLGKKKWNESL 519
+ E + + LL ++ + T DVI K EAA+L +
Sbjct: 242 IHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDF 301
Query: 520 IKDTMENKGGGWHGLGWLGK 539
D + +G HGL +GK
Sbjct: 302 TADALI-QGYLMHGLCRMGK 320
>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 821
Score = 47.0 bits (110), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
+ FE++++M D N + + + + G A DM++ M GI P + +Y +
Sbjct: 250 KAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPI 309
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
S C+ G VD A ++ M + G P A++ AGK + + HK+
Sbjct: 310 SSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKM 363
>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Brachypodium distachyon]
Length = 938
Score = 47.0 bits (110), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
+ F + E+M V ++ ++ G+ D A DMV MK G+ P + +Y
Sbjct: 190 METAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTM 249
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+ +C VD A S+ E M+ GV P+ L AL+ + G+ Y L ++
Sbjct: 250 FIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREM 305
>gi|296081308|emb|CBI17752.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 47.0 bits (110), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
F+ ++ E M + P +E + RM + G + + ++MK GI PR+ Y
Sbjct: 168 FRAADQVPELMNMQGKPPSEKQFEILIRMHIDANRGLRVYYVYEKMKKFGIKPRVFLYNR 227
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
+ G +D A SV E E G+ E L++ +AG+ D V LL ++R ++
Sbjct: 228 IMDGLVKTGHLDLAMSVYEDFKEDGLVEESVTYMILVKGLCKAGRIDEVLELLDRMRGNL 287
Query: 488 RK 489
K
Sbjct: 288 CK 289
>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
Length = 628
Score = 46.6 bits (109), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A ++V M + G++P + +Y + C G +D+AC + E M + GV+P+ ++
Sbjct: 356 DEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASI 415
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVI 498
L +AGK D Y L L T K ST D++
Sbjct: 416 LNALSKAGKVD---YALSHLET--MKARGSTPDLV 445
>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 576
Score = 46.6 bits (109), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++++ M G P RS+ P + FCN +D+A E M+ G YP+ LL
Sbjct: 340 ALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLT 399
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPS 493
+ GK D +L +L S + SPS
Sbjct: 400 ALCKDGKVDDAVVILSQL--SSKGCSPS 425
>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
Length = 628
Score = 46.6 bits (109), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A ++V M + G++P + +Y + C G +D+AC + E M + GV+P+ ++
Sbjct: 356 DEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASI 415
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVI 498
L +AGK D Y L L T K ST D++
Sbjct: 416 LNALSKAGKVD---YALSHLET--MKARGSTPDLV 445
>gi|359495268|ref|XP_003634944.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Vitis vinifera]
Length = 582
Score = 46.6 bits (109), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A D++ M+ G P ++Y LS C N D+AC+V E M E G P+ E +
Sbjct: 388 ARDLLDEMRLFGCRPNAKTYNYLLSSLCKNNRDDEACNVLEEMQEAGCPPDALTFEIFIY 447
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSP---STADVIAKWFNSK 505
+ GK D L ++ + R + P + A I +F+S+
Sbjct: 448 YTYRLGKLDFAIKFLDQMVS--RGLEPRLTTHAAFIKGYFHSR 488
>gi|194382740|dbj|BAG64540.1| unnamed protein product [Homo sapiens]
Length = 211
Score = 46.6 bits (109), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 25/200 (12%)
Query: 592 FQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
++F+ ++ PF+ V+D NV + F R + ++ + + + L+VL R
Sbjct: 19 LKRFENFIKSRPPFDVVIDGLNVA----KMFPKVRESQLLLNVVSQLAKRSLRLLVL-GR 73
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDH 709
+ + Q + E K A +A S DD + LYA + C +T D MRDH
Sbjct: 74 KHMLRRSFQWSRDEMEEVQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLMRDH 132
Query: 710 TFQLL---GNDFFPRWKERHQVRF--SFSDAGPEFYMPPPCSVVIQESEKGNWHIPIASK 764
L F +W++ HQ+ F + F V+Q + +WHIP
Sbjct: 133 KACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQ-TTGDSWHIPY--- 188
Query: 765 QDYDDEER-------RWLCV 777
D D ER +WLC+
Sbjct: 189 -DEDLVERCSCEVPTKWLCL 207
>gi|168018631|ref|XP_001761849.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686904|gb|EDQ73290.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 892
Score = 46.6 bits (109), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 10/163 (6%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
++ FE+ M V + + + + + +GD + A++++ MK +GI P Y P
Sbjct: 453 YEEAFEMKAAMGRLGVQPSVVTYSTLVNCCVKLGDMEQAYNLLAEMKQVGIQPNAHCYNP 512
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
+ F + +D+A V ML GV P+ L+ D+ L ++
Sbjct: 513 LIMGFGSQARLDRALEVLREMLSAGVQPDSYTYSMLIFACSMVRNEDKAVELFEEMLQ-- 570
Query: 488 RKVSPSTA--DVIAKWFNSKEAARLGKKKWNESLIKDTMENKG 528
R V P+ +A F AR GK + + ++K+ +E +G
Sbjct: 571 RGVQPNAGIYSAMASVF-----ARCGKLERSIEMVKE-IERRG 607
>gi|196012058|ref|XP_002115892.1| hypothetical protein TRIADDRAFT_59776 [Trichoplax adhaerens]
gi|190581668|gb|EDV21744.1| hypothetical protein TRIADDRAFT_59776 [Trichoplax adhaerens]
Length = 509
Score = 46.6 bits (109), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 90/213 (42%), Gaps = 43/213 (20%)
Query: 542 WIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVA-SIA-------IKRERNSSFQ 593
W + HT + CK C +L I+L E+ E ++ SI+ K + N+
Sbjct: 250 WEIRHTAITHSGYCKSCKAQLESIELTSDRQERLREVISQSISSGEIFKKYKGDSNAIMS 309
Query: 594 KFQKWLDYYGPFEAVVDAANVGLYSQRNFK-------PAR-VNAVVNGI-----RQKFPS 640
+ + Y P + V+ YSQ FK P R V+ V++G+ R F
Sbjct: 310 DYSGKIAYGSPDQKVLVK-----YSQDPFKDFCQWLHPTRKVDIVIDGLNIAHGRNSFDP 364
Query: 641 KKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIK--FKC 698
K + + T +K A+I+ ++ ++ P +DD Y+LYAA+
Sbjct: 365 LK------ESNKSTKYK-------AMIDSIFSSCRVFLCPNNHSDDVYFLYAAVHGGMNV 411
Query: 699 LLVTNDEMRDHT--FQLLGNDFFPRWKERHQVR 729
L+++D+ RD F L F +W HQVR
Sbjct: 412 KLISDDQFRDFKKGFSLTLLKDFLQWLRGHQVR 444
>gi|307106154|gb|EFN54401.1| hypothetical protein CHLNCDRAFT_135726 [Chlorella variabilis]
Length = 902
Score = 46.6 bits (109), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
++R ++ E M D V NE ++ A G +A ++++RM++ GI P + +Y
Sbjct: 163 WRRAHDVLELMQFDGVQPNEQVFGSIIEAAAVAGKPSVAAELLRRMQAAGIQPNVIAYTS 222
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYP 455
LS + GDV+ A +V + M G P
Sbjct: 223 LLSSYSATGDVEAAEAVLQEMEAVGCLP 250
>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 537
Score = 46.2 bits (108), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G+ A + K MK GI P + +Y + C G + +A V ML+ G P
Sbjct: 269 GEISEAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITF 328
Query: 461 EALLRVSVEAGKGDRVYYLLHKLR 484
L+RV V+AG+ ++V + ++++
Sbjct: 329 NNLMRVHVKAGRPEKVLQVYNQMK 352
>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
Length = 375
Score = 46.2 bits (108), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A D++++M + G P SY P L FC +D+A E M+ G YP+ +L
Sbjct: 140 AIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLT 199
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSP 492
+ GK D LL++L S + SP
Sbjct: 200 ALCKDGKVDAAVELLNQL--SSKGCSP 224
>gi|15228903|ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial; AltName: Full=Protein
PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
gi|7670019|dbj|BAA94973.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332642359|gb|AEE75880.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 46.2 bits (108), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
F+ +++M + NE + + R S GD D + + +MK G++P L +Y +
Sbjct: 514 AFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQ 573
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
FC V KA + + ML G+ P+ L++ E+G+
Sbjct: 574 SFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGR 615
>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
Length = 1056
Score = 46.2 bits (108), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
+G ++ E+M N + + + G AF +++RM + G P L ++G +
Sbjct: 54 KGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLII 113
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
C G+++ A V + M++ G P+ LL E G+ D ++ ++
Sbjct: 114 KGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQV 167
>gi|343887304|dbj|BAK61850.1| PPR containing protein [Citrus unshiu]
Length = 567
Score = 46.2 bits (108), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G D A ++ + +NP ++SY ++ FC G D+A S+ + M G+ P
Sbjct: 345 VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFS 404
Query: 460 LEALLRVSVEAGKGDRVYYLLHKL 483
A+ R+ VE G+ DR LL ++
Sbjct: 405 FNAVFRILVENGELDRAILLLKQM 428
>gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
Length = 439
Score = 46.2 bits (108), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 371 GFEIYEKM---CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
F+I+ +M C +V S T + +M + DMA + K MK P + ++
Sbjct: 318 AFKIFRRMIKVCEPDVD----SYTMIIKMFCGRKELDMALKIWKYMKKKQFVPSMHTFSV 373
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
++ C G+ +AC + E M+E G+ P L + ++ G+ D + +L K+ V
Sbjct: 374 LINGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHLLIKEGRKDVLKFLQEKMNLLV 433
Query: 488 RK 489
++
Sbjct: 434 KE 435
>gi|422293946|gb|EKU21246.1| hypothetical protein NGA_2092600 [Nannochloropsis gaditana CCMP526]
Length = 659
Score = 46.2 bits (108), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
++R E+ E+M + VP N + TA G D +++ M G+ P + SY
Sbjct: 488 WERALELMEEMEVRGVPANVHTYTAAMDACCRGGAVDRVLVLLEEMDGKGVEPNVVSYTI 547
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG--KGDRVYYLLHKLR 484
A+ G D+A +V E M++ G+ + L + AG +G+R+ ++H+ R
Sbjct: 548 AMDAMNRVGKWDRASAVLEQMVQRGLRLDSVSYRTALSTAGRAGDEEGERLTKIVHESR 606
Score = 39.3 bits (90), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A +++ M++ G+ P L S+ A+ G D A + + +HG P +
Sbjct: 245 ALGVLREMQARGLRPDLVSFNTAMDALGKAGQYDLALELFTEIEDHGFAPNLVSYNTAIH 304
Query: 466 VSVEAGKGDRVYYLLHKLR-TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESL 519
AG DR + LL +++ SVR S S +N+ AA K +W +L
Sbjct: 305 ACGRAGMVDRAHELLREMQGLSVRPDSVS--------YNTVMAAFAKKNQWKAAL 351
>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 598
Score = 46.2 bits (108), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A D++++M G P SY P L FC +D+A E M+ G YP+ +L
Sbjct: 363 AIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLT 422
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSP------STADVIAKWFNSKEAARLGKKKWNESL 519
+ GK + +L++L S + SP + D +AK + +A +L + + L
Sbjct: 423 ALCKDGKVEDAVEILNQL--SSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDL 480
Query: 520 IKDTM 524
DT+
Sbjct: 481 KPDTI 485
>gi|384253088|gb|EIE26563.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
Length = 908
Score = 46.2 bits (108), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 19/169 (11%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNN-GDVDKACSVEEHMLEHGVYPEEPELEALL 464
AF + + M+ G+ P +YG L V C GDV++A + + E G+ P + L+
Sbjct: 427 AFQVFEEMQQEGVEPTAVTYG-CLLVACEQLGDVERAFQLYKQACERGIVPTDECHNILI 485
Query: 465 RVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAAR----------LGKKK 514
V G+ D L+ +L S R + ++ + +A+ + AR LG
Sbjct: 486 NVCAATGRVDEALELVKELARSHRAMQAASLNSVARALAAHNVARALRMVSFMTTLGLPT 545
Query: 515 WNESLI----KDTMENKGGGWHGLGWLGKGKWIVSHTTVGGD---ALCK 556
++++ I +++ L W + + ++ + G D ALCK
Sbjct: 546 YHQTTITLIGACARQHRAAEAEDLYWGVRKRGMLVTRSAGSDLIVALCK 594
Score = 39.7 bits (91), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 11/155 (7%)
Query: 320 HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMC 379
HM+ +S RSNL+ K+DW + A L+ A+ +Y+ M
Sbjct: 279 HMRRSSHNQGQRSNLQH-------KQDWLV----AYNALLNLHARSRQASAAEAVYQGML 327
Query: 380 LDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439
+ + S+ + +G+ D AF+ + M+ +G++ +YG L G+
Sbjct: 328 QNGPKPDSISVNTLIAAHAEVGNADAAFERFREMQGMGLSTNKSTYGSLLHCCAQVGNHK 387
Query: 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474
A V + M G+ P +L+ V+ G D
Sbjct: 388 SAARVMQMMRYAGIQPTVEAYTSLMDACVKTGTPD 422
>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 46.2 bits (108), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A D++++M G P SY P L FC +D+A E M+ G YP+ +L
Sbjct: 363 AIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLT 422
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSP------STADVIAKWFNSKEAARLGKKKWNESL 519
+ GK + +L++L S + SP + D +AK + +A +L + + L
Sbjct: 423 ALCKDGKVEDAVEILNQL--SSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDL 480
Query: 520 IKDTM 524
DT+
Sbjct: 481 KPDTI 485
>gi|242036071|ref|XP_002465430.1| hypothetical protein SORBIDRAFT_01g038770 [Sorghum bicolor]
gi|241919284|gb|EER92428.1| hypothetical protein SORBIDRAFT_01g038770 [Sorghum bicolor]
Length = 821
Score = 46.2 bits (108), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%)
Query: 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
MA ++ + M+ GI L ++ ++V+ N+G VD+A + E M+ G P P +L
Sbjct: 370 MASNIKEDMQVNGIRLNLVTWSSLINVYANSGLVDRAIEILEEMIRDGCQPTAPCFNIIL 429
Query: 465 RVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493
V++ + DR + L + + S K+S S
Sbjct: 430 TACVKSCQYDRAFRLFYSWKESGIKISLS 458
>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 46.2 bits (108), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 8/155 (5%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
++E+M D P N ++ + M G D AF++ M+ G+ P +R+ +
Sbjct: 362 ALRVFEEMKKDAAP-NLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVD 420
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS-VRK 489
C + +D+AC++ E M P+E +L+ + G+ D Y + K+ S R
Sbjct: 421 RLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRT 480
Query: 490 VSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTM 524
S +I +FN G+K+ + KD +
Sbjct: 481 NSIVYTSLIKNFFNH------GRKEDGHKIYKDMV 509
>gi|356574874|ref|XP_003555568.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 576
Score = 46.2 bits (108), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G A D+++ MK G+NP Y P +S FC G VD A + M+ G P+
Sbjct: 332 GKAGEAVDVLRVMKEKGLNPDAYCYDPLISAFCKEGKVDLAIGFVDDMISAGWLPDIVNY 391
Query: 461 EALLRVSVEAGKGDRVYYLLHKL 483
++ + G+ D + KL
Sbjct: 392 NTIMGSLCKKGRADEALNIFKKL 414
>gi|330318738|gb|AEC11029.1| hypothetical protein [Camellia sinensis]
Length = 69
Score = 46.2 bits (108), Expect = 0.074, Method: Composition-based stats.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 663 NRALIEKWKNADALYATPTGSNDDW 687
N+ L+E WK + ALYATP GSNDDW
Sbjct: 3 NKKLLENWKRSGALYATPAGSNDDW 27
>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
Length = 802
Score = 46.2 bits (108), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
++YE+M +N+ + R MG DMAF ++K M G P +Y ++
Sbjct: 239 KVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFL 298
Query: 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471
C V+KA + + M GV P+ L+ +AG
Sbjct: 299 CEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAG 337
>gi|224111544|ref|XP_002315895.1| predicted protein [Populus trichocarpa]
gi|222864935|gb|EEF02066.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 46.2 bits (108), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 53/113 (46%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
+ +++KM + + ++ + RM + DMA + +MK+ GI P + + ++
Sbjct: 302 AYSVFQKMSCEGCQPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGILPVMHMFSTLIN 361
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
C+ +D+AC + ML+ G+ P L + ++ GK D V KL
Sbjct: 362 SLCHESKLDEACMYFQEMLDVGIRPPAQLFSNLKQNLLDEGKKDTVVVFERKL 414
Score = 39.3 bits (90), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 6/123 (4%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A + + K+ G P +Y + +C + +D + M + GV P + +L
Sbjct: 232 ALEFFELSKASGFVPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTYDIILH 291
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTME 525
+ AGK Y + K+ + S ST ++I + F +++ + K W D M+
Sbjct: 292 HLIRAGKTKIAYSVFQKMSCEGCQPSVSTYEIIVRMFCNEDRVDMAIKVW------DQMK 345
Query: 526 NKG 528
KG
Sbjct: 346 AKG 348
>gi|242012505|ref|XP_002426973.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212511202|gb|EEB14235.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 484
Score = 46.2 bits (108), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 88/212 (41%), Gaps = 28/212 (13%)
Query: 541 KWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAES-VASIAIKRERNSS-----FQK 594
KW V T+V C C + D+ E EK + ++ + I R N + +
Sbjct: 285 KWSVKITSVSNTGFCSQCKSNIGKADITMDELEKLKKYFISKVFIGRNININSTDKELNR 344
Query: 595 FQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRIT 654
F +L P++ V+D N+ +N K V+ + Q F + ++ + R+ T
Sbjct: 345 FLHFLKKTDPYDVVIDHLNIKYLQSKNLK-------VSNLIQYFEKQNKKILFI-TRKHT 396
Query: 655 GHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIK--FKCLLVTNDEMRDHTFQ 712
+++ + N N Y T S+DD + +YAA++ + D ++ H+
Sbjct: 397 SNEIKEICNS-------NHCQYYYTDNLSSDDLFTIYAAMQKDLNTYFFSKDFLKSHS-S 448
Query: 713 LLGN----DFFPRWKERHQVRFSFSDAGPEFY 740
L+ + + F +W+ HQ S+ FY
Sbjct: 449 LIDDSKLKNVFIKWQWSHQYTAIQSNKIVSFY 480
>gi|242054629|ref|XP_002456460.1| hypothetical protein SORBIDRAFT_03g036710 [Sorghum bicolor]
gi|241928435|gb|EES01580.1| hypothetical protein SORBIDRAFT_03g036710 [Sorghum bicolor]
Length = 439
Score = 46.2 bits (108), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 12/157 (7%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A D++ M+ G++P + S+ L+ F NN D A V E M E + P+E A LR
Sbjct: 197 ALDVIALMEKRGVSPDIISFNILLNGFYNNDSFDDAEKVWEMMKERNIEPDEKSYNAKLR 256
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTME 525
V G+ + L+ +++ K + + + + + KE KK + LIK+
Sbjct: 257 GLVSQGRVEDAVALIERMQKEGPKPDSVSYNELIRGY-CKEGRLNEAKKVYDDLIKNECA 315
Query: 526 NKGGGWHGLGWLGKGKWIVSHTTVGG--DALCKCCGE 560
G +H L V H G D CC E
Sbjct: 316 PNRGTFHTL---------VPHLVEAGELDRALSCCHE 343
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 7/156 (4%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
+F +++E M + +E S A R +S G + A +++RM+ G P SY
Sbjct: 228 SFDDAEKVWEMMKERNIEPDEKSYNAKLRGLVSQGRVEDAVALIERMQKEGPKPDSVSYN 287
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
+ +C G +++A V + ++++ P L+ VEAG+ DR H++ +
Sbjct: 288 ELIRGYCKEGRLNEAKKVYDDLIKNECAPNRGTFHTLVPHLVEAGELDRALSCCHEIFSR 347
Query: 487 VRKVSPS------TADVIA-KWFNSKEAARLGKKKW 515
+V S TA + A + +K LG+K +
Sbjct: 348 KCRVHCSLLQGVVTALIAASRMGEAKRIVHLGRKNY 383
>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
Length = 691
Score = 46.2 bits (108), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452
VGRM D A +++ M++ G+ P + +Y +S +C N D A + + MLE G
Sbjct: 373 VGRM-------DEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKG 425
Query: 453 VYPEEPELEALLRVSVE 469
V P+ +L+RV E
Sbjct: 426 VLPDAITYSSLIRVLCE 442
>gi|147792816|emb|CAN68810.1| hypothetical protein VITISV_001082 [Vitis vinifera]
Length = 577
Score = 45.8 bits (107), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433
I +KM + + + +V R+ GD D+A ++K M + + P + +Y + FC
Sbjct: 147 ILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLAAGLMKEMGLIDLYPNMITYVTMIKGFC 206
Query: 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493
N G ++ AC + + M HG P +L G +R LL ++ SP+
Sbjct: 207 NVGRLEDACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGEMEKESGDCSPN 266
Query: 494 TA 495
Sbjct: 267 VV 268
>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
Length = 1116
Score = 45.8 bits (107), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 78/198 (39%), Gaps = 20/198 (10%)
Query: 288 MIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDW 347
++D + +Y F+ N LG S N L LE PD +
Sbjct: 523 LLDAMPDPDTYAFN---CCINGLSKLGDVSRALQVYNRML-----ELELVPDKVTFN--- 571
Query: 348 SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF 407
I ++ K F++ ++E+M + + + A+ G + A
Sbjct: 572 ---------ILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAAR 622
Query: 408 DMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467
D++ M +LG+ P + +Y + C +G +++AC E M+ G P+ +L+
Sbjct: 623 DILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYAL 682
Query: 468 VEAGKGDRVYYLLHKLRT 485
A + D L+ +L++
Sbjct: 683 CRASRTDDALQLVSELKS 700
>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63070, mitochondrial; Flags: Precursor
gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 590
Score = 45.8 bits (107), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D AFD+ +M++ GI P + +Y P +S CN G A + MLE + P+ AL
Sbjct: 267 DDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNAL 326
Query: 464 LRVSVEAGK 472
+ V+ GK
Sbjct: 327 IDAFVKEGK 335
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 2/127 (1%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ G E++ +M + N + T + D D A + K+M S G++P + +Y
Sbjct: 373 EEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNIL 432
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L CNNG+V+ A V E+M + + + ++ +AGK + + L L S++
Sbjct: 433 LDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSL--SLK 490
Query: 489 KVSPSTA 495
V P+
Sbjct: 491 GVKPNVV 497
>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
gi|219887141|gb|ACL53945.1| unknown [Zea mays]
Length = 522
Score = 45.8 bits (107), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + F ++ M+ GI + S+G + FC NG + +A ++ + M+ V P
Sbjct: 275 GQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVY 334
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLI 520
+++ +E+G ++ + L+ K++ S S T +++ K R + E LI
Sbjct: 335 NSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGL-----CRSSQIDEAEELI 389
Query: 521 KDTMENKG 528
T+ N+G
Sbjct: 390 Y-TLRNQG 396
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A +++ +++ G+ P + SY +S CN GD DKA + + M ++G+ P L
Sbjct: 383 DEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTL 442
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA------DVIAKWFNSKEAARLGKKKWNE 517
+ AG+ + L ++ + V PS++ D + N + A L KK+ +E
Sbjct: 443 VSALASAGRVHDMECLYQQMLH--KNVEPSSSIYGIMVDAYVRCENDSKVASL-KKEMSE 499
>gi|348676445|gb|EGZ16263.1| hypothetical protein PHYSODRAFT_560757 [Phytophthora sojae]
Length = 301
Score = 45.8 bits (107), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 666 LIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQ---LLGNDFFPRW 722
L+ + D + TP+ ++DD+Y + A+K+ +VTND RDH G W
Sbjct: 8 LLNELVQKDHVILTPSQAHDDFYVIDYAVKYDGFIVTNDMFRDHVANKRSFHGKRLTSSW 67
Query: 723 KERHQVRFSFSDAGPEFYMPPP 744
H + F+F G EF MP P
Sbjct: 68 VRSHCIDFTF--VGKEF-MPNP 86
>gi|255560884|ref|XP_002521455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539354|gb|EEF40945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 623
Score = 45.8 bits (107), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D + + K M +GI+P ++ VFC +GDVDK E M E G P+ L
Sbjct: 231 DQCWQVYKEMARVGIHPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTL 290
Query: 464 LRVSVEAGKGDRVYYL 479
+ G+ D +YL
Sbjct: 291 ISCYCRKGRLDDAFYL 306
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 7/146 (4%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
++Y++M + N + + + GD D D ++RM+ G P + +Y +S +
Sbjct: 235 QVYKEMARVGIHPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCY 294
Query: 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492
C G +D A + M V P+ AL+ + GK + L H R R ++P
Sbjct: 295 CRKGRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFH--RMIHRGLNP 352
Query: 493 STADVIAKWFNSKEAARLGKKKWNES 518
D+++ FN+ + K ES
Sbjct: 353 ---DIVS--FNTLICGYCKEGKMRES 373
>gi|15233383|ref|NP_193806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75211707|sp|Q9SVH3.1|PP328_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20740
gi|5262214|emb|CAB45840.1| putative protein [Arabidopsis thaliana]
gi|7268870|emb|CAB79074.1| putative protein [Arabidopsis thaliana]
gi|332658957|gb|AEE84357.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 45.8 bits (107), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
MGD + + M+ LG P SY A+ F GDV ACS E ++E P
Sbjct: 520 MGDIQKSLSLFYEMRKLGFEPDSSSYSIAICCFVEKGDVKAACSFHEKIIEMSCVPSIAA 579
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSV 487
+L + + G+ D V L+ + +V
Sbjct: 580 YLSLTKGLCQIGEIDAVMLLVRECLGNV 607
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 55/134 (41%)
Query: 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443
P +E + RM G + + ++MK G PR+ Y + NG D A +
Sbjct: 190 PPSEKQFEILIRMHADNRRGLRVYYVYEKMKKFGFKPRVFLYNRIMDALVKNGYFDLALA 249
Query: 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFN 503
V E E G+ E L++ +AG+ + + +L ++R ++ K + K
Sbjct: 250 VYEDFKEDGLVEESTTFMILVKGLCKAGRIEEMLEILQRMRENLCKPDVFAYTAMIKTLV 309
Query: 504 SKEAARLGKKKWNE 517
S+ + W+E
Sbjct: 310 SEGNLDASLRVWDE 323
>gi|91806015|gb|ABE65736.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 360
Score = 45.8 bits (107), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D AFD+ +M++ GI P + +Y P +S CN G A + MLE + P+ AL
Sbjct: 267 DDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNAL 326
Query: 464 LRVSVEAGK 472
+ V+ GK
Sbjct: 327 IDAFVKEGK 335
>gi|7413558|emb|CAB86037.1| putative protein [Arabidopsis thaliana]
Length = 798
Score = 45.8 bits (107), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
MKS+G+ P ++ +S N G V++A + E ML G P LL VEA +
Sbjct: 386 MKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQ 445
Query: 473 GDRVYYLLHKLRTSVRKVSPSTADVIAK 500
DR + L + S S D+++K
Sbjct: 446 YDRAFRLFQSWKGSSVNESLYADDIVSK 473
>gi|255549794|ref|XP_002515948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544853|gb|EEF46368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 706
Score = 45.8 bits (107), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 75/184 (40%), Gaps = 16/184 (8%)
Query: 341 QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM 400
+ ++K +++D A + L AK + F+++E M +E + T + RM +
Sbjct: 67 EMKRKGYTLD-IFAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTIMIRMTGRI 125
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D + + + M + G +P L +Y + N+ VDK + M+E P E
Sbjct: 126 GKLDESLALFEEMLNKGCSPNLIAYNTMIQALANSRMVDKTILLFSKMMEKNCRPNEFTY 185
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSV--------RKVSPSTADVIAKWFNSKEAARLGK 512
+L + G+ LHKL V R + + K ++ EA RL
Sbjct: 186 SVILTLLAAEGQ-------LHKLDKVVELSRKYMNRSIYAYLVRTLNKLGHASEAHRLFC 238
Query: 513 KKWN 516
W+
Sbjct: 239 NMWS 242
>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 17/141 (12%)
Query: 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMK 414
+ + L + K Y F+ E Y CL + L G++ + A+++ +++
Sbjct: 465 EAMELFNELKSYNFKLNIENYS--CLID------GLCKAGKL-------ETAWELFEKLS 509
Query: 415 SLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474
G+ P + +Y + FC G VD A + E M E+G P+ LL E K +
Sbjct: 510 QEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLE 569
Query: 475 RVYYLLHKLRTSVRKVSPSTA 495
V LLHK+ + VSP+ A
Sbjct: 570 EVIKLLHKMVQ--KDVSPNAA 588
>gi|255566203|ref|XP_002524089.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536657|gb|EEF38299.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1072
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%)
Query: 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423
K+ ++ +I+EKM D + +A+ R M+M D A+ ++ +K G P +
Sbjct: 942 KEKQIEKAMQIFEKMQQDGCEPTVVTYSALIRGYMNMERADDAWSVLNHLKLKGPKPDFK 1001
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
+Y +S C G ++A + MLE G+ P
Sbjct: 1002 TYSMFISCLCKAGKSEEALQLLSRMLEDGIVP 1033
Score = 39.7 bits (91), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 10/169 (5%)
Query: 380 LDEVPMNEASL--TAVGRMAMSM---GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434
LDEV ++L G + + G + A ++ MK GINP + Y + F
Sbjct: 883 LDEVGTERSTLDQYTYGTLVHGLLRKGRQEEALAKIESMKEAGINPTVHVYTSLIVHFFK 942
Query: 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST 494
++KA + E M + G P AL+R + + D + +L+ L+ K T
Sbjct: 943 EKQIEKAMQIFEKMQQDGCEPTVVTYSALIRGYMNMERADDAWSVLNHLKLKGPKPDFKT 1002
Query: 495 ----ADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539
+ K S+EA +L + + ++ T+ N + GL GK
Sbjct: 1003 YSMFISCLCKAGKSEEALQLLSRMLEDGIVPSTI-NFRTVFFGLNCEGK 1050
>gi|156408157|ref|XP_001641723.1| predicted protein [Nematostella vectensis]
gi|156228863|gb|EDO49660.1| predicted protein [Nematostella vectensis]
Length = 552
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 24/170 (14%)
Query: 605 FEAVVDAANVGLYSQRN------FKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKM 658
F+ ++D NV R F R+ +V K K L+VLH H +
Sbjct: 377 FDVIIDGQNVAFERARKAWGTHRFNYRRIKNMVAYFAAK---NKTILLVLHK-----HSL 428
Query: 659 DQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAI-----KFKCLLVTNDEMRDHTFQL 713
++ ++ + K +Y T T NDD LYA + +VT D+ RDH L
Sbjct: 429 EKDLSLNFLNSLKGLCEVYVTQTNMNDDLLLLYACAINGMENDRTSIVTGDKWRDHR-HL 487
Query: 714 LGNDF---FPRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNWHIP 760
L + F +W +Q+ F S G + V+Q+S K WH P
Sbjct: 488 LPQELHWKFLKWVRLNQITFKESKNGRLHFYRNFFDPVVQKSFK-RWHFP 536
>gi|388516039|gb|AFK46081.1| unknown [Lotus japonicus]
Length = 327
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + A ++K MK G+ P SY P ++ FC VD A E M+ G P+
Sbjct: 144 GKVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMISDGCLPDIVNY 203
Query: 461 EALLRVSVEAGKGDRVYYLLHKL 483
+L + GK D + KL
Sbjct: 204 NTILSTLCKNGKADEALKIFEKL 226
>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 530
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
GD A ++ MK G+ P + +Y + C G + +A V M++ G P
Sbjct: 261 GDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTF 320
Query: 461 EALLRVSVEAGKGDRVYYLLHKLR 484
+L+RV V+AG+ ++V + ++++
Sbjct: 321 NSLMRVHVKAGRTEKVLQVYNQMK 344
>gi|403373087|gb|EJY86457.1| hypothetical protein OXYTRI_13642 [Oxytricha trifallax]
Length = 747
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 661 PVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFF- 719
P N +L+ + + TP DD Y + A KF +VTND+ RD+ + + +D
Sbjct: 644 PDNISLLHALSDKGFIIKTPPQDYDDSYCIKYAKKFNAFIVTNDKFRDYITKQVSSDQAR 703
Query: 720 -PRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNW-HIPI 761
+W + H V ++F+ G EF +P P S + E ++ H P+
Sbjct: 704 ERKWIKDHSVSYAFN--GNEF-LPNPDSKIFNRYEYDDYKHYPL 744
>gi|255558584|ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540536|gb|EEF42103.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 439
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
F ++ +M P + + T + +M + +MA + K MK P + ++ ++
Sbjct: 318 AFRVFRRMIKVCEP-DADTYTMMIKMFCERNELEMALKVWKYMKKKHFVPSMHTFSVLIN 376
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489
C GDV AC + E M+E G+ P L + ++ G+ D + +L K+ +++
Sbjct: 377 GLCEEGDVSHACVMLEDMIEKGIRPSGVTFGRLRHLLIKEGREDVLEFLQQKINVLIKE 435
>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
AF++++ M GI+P + SY ++V CN+G ++ A S ML+ G +P L +L++
Sbjct: 265 AFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVK 324
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 406 AFDMVKRM-KSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
A D+ +M + G+ P + +Y + FC++G++ KA SV HM E G P +L+
Sbjct: 335 ALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLI 394
Query: 465 RVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEA-ARLGKKKWNESLIK 521
+ G D Y+ +K+ TS P+ + + N EA R K K ESLI+
Sbjct: 395 NGFAKRGSLDGAVYIWNKMLTS--GCCPN----VVVYTNMVEALCRHSKFKEAESLIE 446
>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
Length = 700
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + F ++ M+ GI + S+G + FC NG + +A ++ + M+ V P
Sbjct: 453 GQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVY 512
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLI 520
+++ +E+G ++ + L+ K++ S S T +++ K R + E LI
Sbjct: 513 NSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGL-----CRSSQIDEAEELI 567
Query: 521 KDTMENKG 528
T+ N+G
Sbjct: 568 Y-TLRNQG 574
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A +++ +++ G+ P + SY +S CN GD DKA + + M ++G+ P L
Sbjct: 561 DEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTL 620
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA------DVIAKWFNSKEAARLGKKKWNE 517
+ AG+ + L ++ + V PS++ D + N + A L KK+ +E
Sbjct: 621 VSALASAGRVHDMECLYQQMLH--KNVEPSSSIYGIMVDAYVRCENDSKVASL-KKEMSE 677
>gi|452839880|gb|EME41819.1| hypothetical protein DOTSEDRAFT_110529, partial [Dothistroma
septosporum NZE10]
Length = 633
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 11/93 (11%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSV----FCNNGDVDKACSVEEHMLEHGVYPEEPELE 461
A ++V+RM SLGI PR +Y A+S + N + A ++ + M +H +YPE LE
Sbjct: 468 AVEVVERMHSLGIKPRNVTYRLAMSACQRDWKNTNIMHNATALIDDMQKHLLYPECQTLE 527
Query: 462 ALLRVSVEAGKG-------DRVYYLLHKLRTSV 487
L ++++ G DR+ L+H +R+ +
Sbjct: 528 CYLSLALQTADGKNIIRAIDRMDPLVHLMRSRI 560
>gi|224144668|ref|XP_002325369.1| predicted protein [Populus trichocarpa]
gi|222862244|gb|EEE99750.1| predicted protein [Populus trichocarpa]
Length = 422
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%)
Query: 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457
++ G + A DMV+RM G+ P + ++ + CN G+VD + + + G P+
Sbjct: 227 LNAGYLESAKDMVRRMMKEGLVPDVNTFNSMVEAICNAGEVDFCVDMYHSVCKLGFCPDI 286
Query: 458 PELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAK 500
+ L+ + G+ D + LLH L K PS I K
Sbjct: 287 NSYKILIPAVSKVGRIDEAFRLLHNLIEDGHKPFPSLYAPIIK 329
>gi|357462685|ref|XP_003601624.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490672|gb|AES71875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 684
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%)
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
N S V R+ G A + M+ G+ + +Y +S++ + + DKA ++
Sbjct: 370 NVVSYNTVLRVYGEAGLFGEAVHLFSLMQMKGVPQNVVTYNTMISIYGKSLEHDKATNLI 429
Query: 446 EHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV 490
+ M G+ P ++ + +AGK DR L HKLRTS K+
Sbjct: 430 QEMQSRGIQPNAITYSTIISIWEKAGKLDRAAMLFHKLRTSGVKI 474
Score = 39.7 bits (91), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/156 (19%), Positives = 68/156 (43%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
F ++ M + VP N + + + + D A ++++ M+S GI P +Y
Sbjct: 387 FGEAVHLFSLMQMKGVPQNVVTYNTMISIYGKSLEHDKATNLIQEMQSRGIQPNAITYST 446
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
+S++ G +D+A + + GV +E + ++ +AG LL++L+
Sbjct: 447 IISIWEKAGKLDRAAMLFHKLRTSGVKIDEILYQTMIVAYQKAGLVAHAKRLLNELKQPD 506
Query: 488 RKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDT 523
+ ++A+ EA + ++ ++ +KD
Sbjct: 507 NVSRETAITILARAGKVDEAMWVFRQAFDAGEVKDI 542
>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Glycine max]
Length = 564
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
GD A ++ MK GI P + +Y + C G + +A V M++ G P
Sbjct: 296 GDISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTF 355
Query: 461 EALLRVSVEAGKGDRVYYLLHKLR 484
+L+RV V+AG+ ++V + ++++
Sbjct: 356 NSLMRVHVKAGRTEKVLKVYNQMK 379
>gi|242050034|ref|XP_002462761.1| hypothetical protein SORBIDRAFT_02g031520 [Sorghum bicolor]
gi|241926138|gb|EER99282.1| hypothetical protein SORBIDRAFT_02g031520 [Sorghum bicolor]
Length = 535
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 73/185 (39%), Gaps = 7/185 (3%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
R E+ +M P N A+ A+ R + G + + +M L P + +Y +
Sbjct: 293 RAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMHQLRCEPDIITYNFLI 352
Query: 430 SVFCN--NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
C G++D A V + M+ P+ + R+ V G + L K+R
Sbjct: 353 ETHCGKGQGNLDAALKVLDKMIAKKCVPDCHTFNPMFRLLVVLGNIGAAHKLYEKMRELQ 412
Query: 488 RKVSPSTADVIAKWFNSKEAARL---GKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIV 544
K + T + + K FN +++ + KK + I+ M + G+G W
Sbjct: 413 CKPNVVTYNCLLKLFNKEKSMDMVLRMKKNMDVEGIEPNMHTYAALIE--AFCGRGNWKR 470
Query: 545 SHTTV 549
+H T+
Sbjct: 471 AHATL 475
>gi|357127090|ref|XP_003565218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Brachypodium distachyon]
Length = 886
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 72/301 (23%), Positives = 115/301 (38%), Gaps = 32/301 (10%)
Query: 209 GAIRLYDKAQREGIKLGQYHYNVLLY-LCSSAAVGVVKPAKSGSGMRTLDTFEVST---- 263
GA L + Q EG K+ YNVL+Y LC + V K+ R + EV+
Sbjct: 215 GAKGLVARMQDEGDKVSAVPYNVLIYGLCKNQRVREAVDVKNSMLARGVAADEVTCRTLV 274
Query: 264 ---MNSTELGDSRDMDNN-GQLDYGSSPMIDKLESNSSYRFDDL------DSTFNEKENL 313
+ EL + +M + +L + S E+N S+ D L + F L
Sbjct: 275 YGFCRTEELDMALEMTGDMARLGFVPS------EANCSFMLDGLRKKGRVEEAFRLACQL 328
Query: 314 GQ-------FSNGHMKLNSQLLDGR-SNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKK 365
G+ F+ + LN+ +G S +R ++ S K N+ I + K+
Sbjct: 329 GELRMVPNIFAYNAL-LNNMCKNGMFSEADRLVNEMSDKGLEP--NEVTYAILIHSLCKR 385
Query: 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425
+ ++M V M ++ D DMA + M +G+ P SY
Sbjct: 386 GMMDDALCMLDRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASY 445
Query: 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485
P ++ C GD+ A + M E GV AL+ +A K D L +K+
Sbjct: 446 SPVIAGLCRKGDLSGAVELHRKMAEKGVAWNTYTFTALINGFCKAKKMDEASRLFNKMTE 505
Query: 486 S 486
S
Sbjct: 506 S 506
>gi|297841875|ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334660|gb|EFH65078.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 512
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 369 QRGFEIYEKM-CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
+ +E+Y+KM C V E + RM + DMA + MK G+ P + +
Sbjct: 391 KEAYEVYQKMSCEPTVSTYEIMV----RMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSS 446
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
++ C+ +D+AC ML+ G+ P L + ++ G+ D+V L K+
Sbjct: 447 LITALCHENKLDEACEYFNEMLDVGIRPPGHLFSRLKQTLLDEGRKDKVADLAVKM 502
>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
Length = 588
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + A+++ +++ GI P +Y + FC G VDKA + + M E+G P+
Sbjct: 461 GKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITY 520
Query: 461 EALLRVSVEAGKGDRVYYLLHKL 483
L+R E+ K ++V LLH++
Sbjct: 521 SILMRGFYESNKLEKVVQLLHRM 543
>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
Length = 876
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D+ + +++RM G+NP + +Y ++ FC G +++AC + +HM G+ P E L
Sbjct: 692 DITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLL 751
Query: 464 LRVSVE 469
++ +
Sbjct: 752 IKCCCD 757
Score = 42.7 bits (99), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++ +M+ GI P + +Y L C+ D D A + E M ++G+ P+E L
Sbjct: 401 AMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTD 460
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPST-ADVIAKWFNSKEAARLGKKKWNESLIKDT 523
+AG+ + Y + + ++ KV +T D +K N+ AA L ++ +E D+
Sbjct: 461 ALCKAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDS 519
>gi|30679784|ref|NP_195903.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332278227|sp|Q8GYL7.3|PP361_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g02830, chloroplastic; Flags: Precursor
gi|332003140|gb|AED90523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 852
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
MKS+G+ P ++ +S N G V++A + E ML G P LL VEA +
Sbjct: 400 MKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQ 459
Query: 473 GDRVYYLLHKLRTSVRKVSPSTADVIAK 500
DR + L + S S D+++K
Sbjct: 460 YDRAFRLFQSWKGSSVNESLYADDIVSK 487
>gi|39104565|dbj|BAC42187.2| unknown protein [Arabidopsis thaliana]
Length = 852
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
MKS+G+ P ++ +S N G V++A + E ML G P LL VEA +
Sbjct: 400 MKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQ 459
Query: 473 GDRVYYLLHKLRTSVRKVSPSTADVIAK 500
DR + L + S S D+++K
Sbjct: 460 YDRAFRLFQSWKGSSVNESLYADDIVSK 487
>gi|255557793|ref|XP_002519926.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540972|gb|EEF42530.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 481
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 9/138 (6%)
Query: 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416
+R S+ + F R + EK CL + +L M + D A M M
Sbjct: 251 VRESQTDDAFDFLRLMK--EKGCLPGLKFYSDALD----MLLKRNDVLHAVPMWDIMVDT 304
Query: 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476
G+ P L Y + + CNN D+D A + + M+ HG +P+ + + R V+ K +
Sbjct: 305 GLMPNLLMYNSMIGLLCNNNDIDNAFRLFDDMVFHGAFPDFLTYKMIFRCLVKNKKVSQA 364
Query: 477 YYLLHKLRTSVRKVSPST 494
H++ ++ +P T
Sbjct: 365 ASFFHEM---IKNENPPT 379
>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 566
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++++ M G P RS+ P + FCN +D+A E M+ G YP+ LL
Sbjct: 330 ALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLT 389
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPS 493
+ GK D +L +L S + SPS
Sbjct: 390 ALCKDGKVDDAVVILSQL--SSKGCSPS 415
>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
Length = 991
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D+ + +++RM G+NP + +Y ++ FC G +++AC + +HM G+ P E L
Sbjct: 807 DITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLL 866
Query: 464 LRVSVE 469
++ +
Sbjct: 867 IKCCCD 872
Score = 42.7 bits (99), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++ +M+ GI P + +Y L C+ D D A + E M ++G+ P+E L
Sbjct: 516 AMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTD 575
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPST-ADVIAKWFNSKEAARLGKKKWNESLIKDT 523
+AG+ + Y + + ++ KV +T D +K N+ AA L ++ +E D+
Sbjct: 576 ALCKAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDS 634
>gi|358345964|ref|XP_003637044.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358346621|ref|XP_003637365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502979|gb|AES84182.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503300|gb|AES84503.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 448
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454
RM GD + D+V++MK +G+ P +Y +S G+ +AC V E M
Sbjct: 249 RMICKRGDYERVVDLVEKMKKIGVEPNGSTYNLLISCLFKIGNFAEACQVLETMENENGL 308
Query: 455 PEEPELEALLRVSVEAGKGDRVYYLLHKLRT-SVRKVSPSTADVIAKWF 502
+E + ++R+ + G+ D + K+ V S + A VI +F
Sbjct: 309 SKEFTFDTIIRLLCKHGQIDLALKFIDKMTLKGVEPCSLTHAAVIKCYF 357
>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Glycine max]
Length = 1113
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 4/130 (3%)
Query: 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEH 447
A + A+GR D D+++ M++LG+ P + +Y + V G +D A + +
Sbjct: 232 ALMVALGRRR----DTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKT 287
Query: 448 MLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEA 507
M + G P+ L+ AGK D+ L K+R S K T + F +
Sbjct: 288 MEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGD 347
Query: 508 ARLGKKKWNE 517
K+ W+E
Sbjct: 348 LETVKRFWSE 357
Score = 40.0 bits (92), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A + MK+ GI+P L +Y + F N G VD+A + E + G+ P AL+R
Sbjct: 1017 ALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIR 1076
Query: 466 VSVEAGKGDRVYYLLHKL 483
++G DR + + K+
Sbjct: 1077 GHSKSGNKDRAFSVFKKM 1094
Score = 39.3 bits (90), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D AFDM+ M+ GI P L +Y +S N +D+A + +M GV P
Sbjct: 381 GKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSY 440
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKK 514
+ + G ++ K++ R + PS A A ++ E R+ + K
Sbjct: 441 VLFIDYYGKLGDPEKALDTFEKMKK--RGIMPSIAACNASLYSLAEMGRIREAK 492
>gi|356515931|ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Glycine max]
Length = 461
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
R F ++ +M P + + T + +M + +MA + K MKS P + ++ +
Sbjct: 339 RAFRVFCRMIKLCEP-DADTYTMMIKMFCEKNELEMALKIWKYMKSKQFVPSMHTFSALI 397
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489
C + KAC V E M+E G+ P L ++ ++ G+ D + +L K+ V++
Sbjct: 398 KGLCEKDNAAKACVVMEEMIEKGIRPSRITFGRLRQLLIKEGREDVLKFLHEKMNLLVKE 457
>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
Length = 991
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D+ + +++RM G+NP + +Y ++ FC G +++AC + +HM G+ P E L
Sbjct: 807 DITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLL 866
Query: 464 LRVSVE 469
++ +
Sbjct: 867 IKCCCD 872
Score = 42.7 bits (99), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++ +M+ GI P + +Y L C+ D D A + E M ++G+ P+E L
Sbjct: 516 AMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTD 575
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPST-ADVIAKWFNSKEAARLGKKKWNESLIKDT 523
+AG+ + Y + + ++ KV +T D +K N+ AA L ++ +E D+
Sbjct: 576 ALCKAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDS 634
>gi|296084709|emb|CBI25851.3| unnamed protein product [Vitis vinifera]
Length = 528
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433
I +KM + + + +V R+ GD D+A ++K M + + P + +Y + FC
Sbjct: 153 ILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLAAGLMKEMGLIDLYPNMITYVTMIKGFC 212
Query: 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493
N G ++ AC + + M HG P +L G +R LL ++ SP+
Sbjct: 213 NVGRLEDACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGEMEKESGDCSPN 272
Query: 494 TA 495
Sbjct: 273 VV 274
>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
Length = 581
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 58/129 (44%)
Query: 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416
I ++ K F++ ++E+M + + + A+ G + A D++ M +L
Sbjct: 368 ILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNL 427
Query: 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476
G+ P + +Y + C +G +++ C E M+ G PE +L+ A + D
Sbjct: 428 GVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDA 487
Query: 477 YYLLHKLRT 485
L+ KL++
Sbjct: 488 LQLVSKLKS 496
>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
Length = 800
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
F +Y++MC +P N + T+ D+A M+ ++ G+ P + +Y +
Sbjct: 545 AFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIY 604
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYP 455
FC G++ A V ML+ G+ P
Sbjct: 605 GFCQEGNMSHALQVLVLMLKDGLLP 629
>gi|359474405|ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g47360-like [Vitis vinifera]
Length = 638
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 6/156 (3%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433
I +KM + + + +V R+ GD D+A ++K M + + P + +Y + FC
Sbjct: 147 ILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLAAGLMKEMGLIDLYPNMITYVTMIKGFC 206
Query: 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493
N G ++ AC + + M HG P +L G +R LL ++ SP+
Sbjct: 207 NVGRLEDACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGEMEKESGDCSPN 266
Query: 494 TADVIAKWFNSKEAARLGKKKWNESL-IKDTMENKG 528
+ S + K K E+L I D M G
Sbjct: 267 VVT-----YTSMIQSCCEKGKLMEALEILDRMRACG 297
>gi|357476703|ref|XP_003608637.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509692|gb|AES90834.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 715
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448
+ + +G+M GD D +++ MKSLG+ P L Y L G A S+ E M
Sbjct: 297 TFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEM 356
Query: 449 LEHGVYPEEPELEALLRV 466
++ G+ P E L A++++
Sbjct: 357 IDSGIAPNEKTLTAVIKI 374
>gi|224088075|ref|XP_002308315.1| predicted protein [Populus trichocarpa]
gi|222854291|gb|EEE91838.1| predicted protein [Populus trichocarpa]
Length = 545
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 6/144 (4%)
Query: 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431
+++ M L+ VP N S AV + G + A DM M+++GI+P L ++ +
Sbjct: 401 LKLFYGMQLESVPPNVMSWNAVILGFIRNGQINEAQDMFSHMQAVGIHPNLMTFTTLICG 460
Query: 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR-----VSVEAGKGDRVYYLLHKLRTS 486
NG ++A V + M E G+ P + + + S++ G+ Y L H L +
Sbjct: 461 LVQNGFGNEAILVFQKMQECGIRANLPIIISTISACTDVASLQYGRAIHGYILRHDLLSP 520
Query: 487 VRKVSPSTADVIAKWFNSKEAARL 510
+ V+ + A++ +K N +A R+
Sbjct: 521 I-PVATALAEMYSKCGNMDQAKRV 543
>gi|15219049|ref|NP_175673.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207559|sp|Q9SSR6.1|PPR78_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g52640, mitochondrial; Flags: Precursor
gi|5903042|gb|AAD55601.1|AC008016_11 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
gi|45773940|gb|AAS76774.1| At1g52640 [Arabidopsis thaliana]
gi|62320530|dbj|BAD95108.1| hypothetical protein [Arabidopsis thaliana]
gi|332194712|gb|AEE32833.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 523
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
E+ E+ C+ ++ A L A+ + GD D + M + M +LG+ P S+ + +
Sbjct: 233 EMLERNCVVDLLAYNALLDALCKS----GDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAY 288
Query: 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
C+ GDV A V + M + + P +++ + K D Y LL ++
Sbjct: 289 CDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEM 339
>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 602
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A D++++M G P SY P L FC +D+A E M+ G YP+ LL
Sbjct: 367 AIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLT 426
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEA-ARLGKKKWNESLIKDTM 524
+ GK D +L++L S + SP V+ + + ++GK ++ L+++ M
Sbjct: 427 ALCKDGKVDAAVEILNQL--SSKGCSP----VLITYNTVIDGLTKVGKTEYAVELLEE-M 479
Query: 525 ENKG 528
KG
Sbjct: 480 RRKG 483
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452
VGRM D A +++ M++ G+ P + +Y +S +C N D A + + MLE G
Sbjct: 413 VGRM-------DEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKG 465
Query: 453 VYPEEPELEALLRV 466
V P+ +L+RV
Sbjct: 466 VLPDAITYSSLIRV 479
>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 800
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
F +Y++MC +P N + T+ D+A M+ ++ G+ P + +Y +
Sbjct: 545 AFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIF 604
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYP 455
FC G++ A V ML+ G+ P
Sbjct: 605 GFCQEGNMSHALQVLVLMLKDGLLP 629
>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
Length = 564
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 59/129 (45%)
Query: 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416
I ++ K F++ ++E+M + + + A+ G + A D++ M +L
Sbjct: 296 ILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNL 355
Query: 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476
G+ P + +Y + C +G +++AC E M+ G P+ +L+ A + D
Sbjct: 356 GVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDA 415
Query: 477 YYLLHKLRT 485
L+ +L++
Sbjct: 416 LQLVSELKS 424
>gi|226466758|emb|CAX69514.1| hypothetical protein [Schistosoma japonicum]
Length = 284
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 105/266 (39%), Gaps = 29/266 (10%)
Query: 537 LGKGKWIVS-HTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIK---------R 586
L +W+ + H + +C C + L+ D+ + A++ IK
Sbjct: 23 LKHERWVGNMHAKINRGYMCSKCNQSLSPPDMSQFPLSQMADTFHETVIKGTNIENLYLT 82
Query: 587 ERNSSFQKFQKWLDYYG-PFEAVVDAANVGLYSQRNFKPAR-----VNAVVNGIRQKFPS 640
+ +++LD P + ++D N L + R F+ V V+ I + F
Sbjct: 83 ATSDEVITLKQFLDSQTEPLDCIIDFLN--LMNIRKFRFCESSGSFVAEVIRQINKDFNL 140
Query: 641 KKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KC 698
+++ L+ + + P+ + L + + + T S DD + LY A+K +C
Sbjct: 141 RRFCLVSKGIGIVRRPEFWNPI-KMLGNQLGISVHKFCTNAKSEDDAFLLYMAMKSGPQC 199
Query: 699 LLVTNDEMRDHTFQL---LGNDFFPRWKERHQVRFSFSDAGPEFYM-PPPCSVVIQESEK 754
+V+NDE +H + LG RW+ Q+ G Y P C + + S +
Sbjct: 200 YIVSNDEYNNHRYSSGPKLGKQ-ISRWQSLRQL--VLQPHGRSIYQKPSKCDLCVHGSLE 256
Query: 755 GNWHIPIA-SKQDYDDEERRWLCVTR 779
WHIP + + WLC+ R
Sbjct: 257 TGWHIPYYDGYKKFHTAVDSWLCLRR 282
>gi|280967731|gb|ACZ98537.1| PPR motif protein [Malus x domestica]
Length = 751
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
++ +M L+ VP N S ++ ++ G + A DM +M+SLG+ P L ++ +S
Sbjct: 386 ALNLFYQMQLESVPPNVISWNSLILGFLNSGQVNEAKDMFLQMQSLGVQPNLVTWTTLIS 445
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL-----RVSVEAGKGDRVYYLLHKLRT 485
+G +A + M E GV P + +L S++ G+ Y + H L
Sbjct: 446 GLARSGFGYEAILTFQRMQEAGVKPNVVSIIGVLLACINLASLQIGRALHGYLIRHSLYL 505
Query: 486 SVRKVSPSTADVIAKWFNSKEAARL 510
S+ ++ S D+ AK + +A R+
Sbjct: 506 SI-PIATSLVDMYAKCGDRDQAKRV 529
>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 70/163 (42%), Gaps = 5/163 (3%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
K ++ E++ +M ++ N S + ++G AF + M GI P L
Sbjct: 476 CKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTL 535
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
+ + +C +GD+ KA M+ GV P+ L+ V+ D+ ++L++K
Sbjct: 536 VTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINK 595
Query: 483 LRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTME 525
+ T + T +VI F R G+ + E +++ +E
Sbjct: 596 METKGLQPDVVTYNVILNGF-----CRQGRMQEAELILRKMIE 633
>gi|89257471|gb|ABD64962.1| PPR repeat containing protein [Brassica oleracea]
Length = 345
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%)
Query: 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451
V R+ GD M +++ M+S+ ++P + +Y ++ FCN G VD+A + + M EH
Sbjct: 38 VVIRLFADKGDLSMGMKLMEEMESIDLSPDVMTYTSLINGFCNAGKVDEAWKLAKGMSEH 97
Query: 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
G +L + G+ +R LL ++
Sbjct: 98 GCVLNTVTYSRILEGVCKCGEMERALELLTEM 129
>gi|297816088|ref|XP_002875927.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321765|gb|EFH52186.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 406 AFDMVKRM-KSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
A DM +M + G+ P + +Y + FC++G++DKA SV HM E G P +L+
Sbjct: 334 ALDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLI 393
Query: 465 RVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIK 521
+ G + Y+ +K+ T S +V+ + R K K ESLI+
Sbjct: 394 NGFTKRGSLEGAVYIWNKMLT-----SGCCPNVVVYTSMVEALCRHSKFKEAESLIE 445
>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 8/155 (5%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
+++E+M D P N ++ + M G D AF++ M+ G+ P +R+ +
Sbjct: 362 ALKVFEEMKKDAAP-NLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVD 420
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS-VRK 489
C + +D+AC++ E M P+E +L+ + G+ D Y + K+ S R
Sbjct: 421 RLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRT 480
Query: 490 VSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTM 524
S +I +FN G+K+ + KD +
Sbjct: 481 NSIVYTSLIKNFFNH------GRKEDGHKIYKDMI 509
>gi|115489040|ref|NP_001067007.1| Os12g0557800 [Oryza sativa Japonica Group]
gi|113649514|dbj|BAF30026.1| Os12g0557800 [Oryza sativa Japonica Group]
Length = 682
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D A +V++M+ GI P + +Y + FCN G V++A + + M E GV P E
Sbjct: 223 GIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATY 282
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAAR 509
L+ + D+ Y +L + PS + + K+ A+
Sbjct: 283 RTLVHGVFRCLERDKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAK 331
>gi|310831084|ref|YP_003969727.1| hypothetical protein crov095 [Cafeteria roenbergensis virus BV-PW1]
gi|309386268|gb|ADO67128.1| hypothetical protein crov095 [Cafeteria roenbergensis virus BV-PW1]
Length = 325
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 25/117 (21%)
Query: 605 FEAVVDAANV-----GLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHK-- 657
++ V D N+ G++ +FK +++++V + K PL+ +H R + K
Sbjct: 171 YDLVFDGNNILLNKKGIFEVESFK--KLHSLVESTKTK---GYTPLVFIHIRHVKTIKRL 225
Query: 658 -MDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQL 713
+D P A +TP NDDW+ LY AIK LV+ D RDH Q
Sbjct: 226 GLDIPF------------AFISTPYRYNDDWFSLYYAIKHDIPLVSRDIFRDHINQF 270
>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1245
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468
++ M GI+P R Y L+ C GD+ A V+E M+ H + P A++R
Sbjct: 881 VLHEMSKQGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALA 940
Query: 469 EAGKGDRVYYLLHKLRTSVRKVSPSTA 495
+ GK D LL + K+ P+ A
Sbjct: 941 KCGKADEASLLLRSMLK--MKLVPTIA 965
>gi|224149779|ref|XP_002336862.1| predicted protein [Populus trichocarpa]
gi|222837029|gb|EEE75408.1| predicted protein [Populus trichocarpa]
Length = 370
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
MK GI P + +Y + C G + +A V ML+ G P +L+R+ V+AG+
Sbjct: 277 MKVAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMLDAGCQPNSITYNSLMRIHVKAGR 336
Query: 473 GDRVYYLLHKLR 484
++V + ++++
Sbjct: 337 TEKVLQVYNQMK 348
>gi|449445049|ref|XP_004140286.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20740-like [Cucumis sativus]
gi|449531474|ref|XP_004172711.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20740-like [Cucumis sativus]
Length = 726
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 56/134 (41%)
Query: 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443
P +E + RM G + + ++MK G+ PR+ Y L +D A +
Sbjct: 189 PPSEKQFEILIRMHCDANRGLRVYYVYEKMKKFGVVPRVFLYNRILDALVKTDHLDLALT 248
Query: 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFN 503
V E+G+ E L++ +AG+ D + LL ++R ++ K + K
Sbjct: 249 VYRDFQENGLVEESVTFMILIKGLCKAGRVDEMLELLARMRANLCKPDVFAYTAMVKVLA 308
Query: 504 SKEAARLGKKKWNE 517
SK+ + W+E
Sbjct: 309 SKDNLEGCLRVWDE 322
Score = 40.0 bits (92), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 68/345 (19%), Positives = 134/345 (38%), Gaps = 55/345 (15%)
Query: 171 KVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYN 230
++ + D +G S+K QF++ + + + RG + +Y+K ++ G+ + YN
Sbjct: 178 QIPELMDSQGKPPSEK----QFEILIRMHCDANRG--LRVYYVYEKMKKFGVVPRVFLYN 231
Query: 231 VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMID 290
R LD + L RD NG ++ + MI
Sbjct: 232 -----------------------RILDALVKTDHLDLALTVYRDFQENGLVEESVTFMIL 268
Query: 291 KLESNSSYRFDD-LDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349
+ R D+ L+ + NL + ++L + NLE + W
Sbjct: 269 IKGLCKAGRVDEMLELLARMRANLCKPDVFAYTAMVKVLASKDNLE------GCLRVW-- 320
Query: 350 DNQDADEIRLSEDAKKYA-----------FQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398
D AD R+ D Y Q+G+E++++M + ++ A + +
Sbjct: 321 DEMRAD--RVEPDVMAYGTLIIGLCKVGRAQKGYELFQEMKGKRILIDRAIYGTLIEAFV 378
Query: 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458
+A D+ K + G L Y + CN VDKA + + + + P+
Sbjct: 379 QDEKVGLACDLFKDLVDSGYRADLGIYHSLIKGLCNVNQVDKAYKLFQLTIREDLKPDFE 438
Query: 459 ELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFN 503
++ ++ + VE G+ D + KL + ++K+ S DV++K+ +
Sbjct: 439 TVKPIMMMYVETGRMDDFW----KLVSLLQKLEFSVDDVLSKFLS 479
>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
MK GI P + +Y + C G + +A + ML+ G P +L+R+ V+AG+
Sbjct: 224 MKVAGIKPNVYTYSIVIDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGR 283
Query: 473 GDRVYYLLHKLR 484
++V + ++++
Sbjct: 284 TEKVLQVYNQMK 295
>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
Length = 1091
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 75/184 (40%), Gaps = 26/184 (14%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++ K M GI+P +R+Y + F DVD + M GV P +R
Sbjct: 190 AMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIR 249
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKK---WN------ 516
V +A + D Y++L K+ S K T VI + +A RL K W
Sbjct: 250 VLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLC--DAGRLSDAKAVFWKMKASDQ 307
Query: 517 --ESLIKDTMENKGGG----------WHGLGWLGKGKWIVSHTTVGGDALCKC--CGEKL 562
+ + T+ +K G W+ + G IVS+T V DALC+ E L
Sbjct: 308 KPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAV-VDALCQVGRVDEAL 366
Query: 563 AIID 566
A+ D
Sbjct: 367 AVFD 370
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
A QR YE M + + A+ AV G MA + +K++G++P +Y
Sbjct: 435 AIQR----YEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYT 490
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
+ D+A + M+E G P+ L +L+ + GKG+ + L HKL+
Sbjct: 491 MMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKE- 549
Query: 487 VRKVSPS 493
K+ P+
Sbjct: 550 -MKIEPT 555
>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 505
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448
SL +GR+ D + + M + G P L +Y + F + G VD+AC + + M
Sbjct: 144 SLGTIGRI-------DAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQM 196
Query: 449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS 491
++ G+ P+ L+ + G+ +R + + K R+ +V+
Sbjct: 197 VQKGLQPDAVTYNILIDAFGKTGQLERAFDFVGKSRSFTNEVT 239
>gi|15223927|ref|NP_177262.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169669|sp|Q9C9A2.1|PP112_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g71060, mitochondrial; Flags: Precursor
gi|12323433|gb|AAG51696.1|AC016972_15 hypothetical protein; 31939-30407 [Arabidopsis thaliana]
gi|332197036|gb|AEE35157.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 510
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 369 QRGFEIYEKM-CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
+ +E+Y+ M C V E + RM + DMA + MK G+ P + +
Sbjct: 389 KEAYEVYQTMSCEPTVSTYEIMV----RMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSS 444
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
++ C+ +D+AC ML+ G+ P L + ++ G+ D+V L+ K+
Sbjct: 445 LITALCHENKLDEACEYFNEMLDVGIRPPGHMFSRLKQTLLDEGRKDKVTDLVVKM 500
>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Vitis vinifera]
Length = 531
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
MK GI P + +Y + C +G + +A V M++ G P L+RV V+AG+
Sbjct: 276 MKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGR 335
Query: 473 GDRVYYLLHKLR 484
++V + ++++
Sbjct: 336 TEKVLQVYNQMK 347
>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%)
Query: 375 YEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434
YE+MC + + N + T++ D A +M MK+ G+ + +YG + FC
Sbjct: 606 YEEMCANGISPNVITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCK 665
Query: 435 NGDVDKACSVEEHMLEHGVYPEEPELEALL 464
+++ A ++ +LE G+ P +P +L+
Sbjct: 666 KSNMESASALFSELLEEGLNPSQPVYNSLI 695
>gi|125537003|gb|EAY83491.1| hypothetical protein OsI_38705 [Oryza sativa Indica Group]
Length = 696
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D A +V++M+ GI P + +Y + FCN G V++A + + M E GV P E
Sbjct: 237 GIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATY 296
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAAR 509
L+ + D+ Y +L + PS + + K+ A+
Sbjct: 297 RTLVHGVFRCLERDKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAK 345
>gi|77556780|gb|ABA99576.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 696
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D A +V++M+ GI P + +Y + FCN G V++A + + M E GV P E
Sbjct: 237 GIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATY 296
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAAR 509
L+ + D+ Y +L + PS + + K+ A+
Sbjct: 297 RTLVHGVFRCLERDKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAK 345
>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
Length = 769
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
+IY +M +N+ ++ R +G D AF ++K M G P +Y ++
Sbjct: 408 KIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFL 467
Query: 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485
C+ V+KA + + M GV P+ L+ +AG ++ +L ++R+
Sbjct: 468 CHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRS 520
>gi|414868427|tpg|DAA46984.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
Length = 674
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D A +VK+M+ GI P + +Y + FCN V++A V E M E GV E
Sbjct: 229 GIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERMKEKGVSATEATY 288
Query: 461 EALLRVSVEAGKGDRVYYLL 480
+L+ + + +R Y +L
Sbjct: 289 RSLVHGAFRCLEKERAYRML 308
>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
Length = 796
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 122/290 (42%), Gaps = 38/290 (13%)
Query: 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKS-- 249
F + LD K+G A +L+D R+GIK Y ++L+ A G + S
Sbjct: 310 FTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILH--GYATKGALSEMHSFL 367
Query: 250 ----GSGMR----TLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSP-------MIDKLES 294
G+G+ + + +G++ D+ N + G SP +ID L
Sbjct: 368 DLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMR-QQGLSPNVVNYATLIDALCK 426
Query: 295 NSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQ-- 352
R DD + FN+ N G N + + + L+ G +++ +++ + + + NQ
Sbjct: 427 LG--RVDDAELKFNQMINEGVAPN--IVVFTSLVYGLCTIDKW--EKAGELFFEMVNQGI 480
Query: 353 -------DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM 405
+ L + + QR ++ E+ + P + S A+ R +G D
Sbjct: 481 HPNVVFFNTIMCNLCTEGRVMKAQRLIDLMER--VGTRP-DIISYNALIRGHCLVGKTDE 537
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
A ++ M S+G+ P +Y L +C +G +D A SV + ML +G+ P
Sbjct: 538 ASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITP 587
>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like isoform 1 [Vitis vinifera]
Length = 610
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A D++++M G P SY P L FC +D+A + M+ G YP+ LL
Sbjct: 375 AIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLT 434
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSP------STADVIAKWFNSKEAARL 510
+ GK D +L++L S + SP + D ++K ++ A +L
Sbjct: 435 ALCKDGKVDVAVEILNQL--SSKGCSPVLITYNTVIDGLSKVGKTERAIKL 483
>gi|147838532|emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]
Length = 676
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 75/175 (42%), Gaps = 11/175 (6%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
R +E+YE+M + N + + + GD +++M+ G +P + +Y +
Sbjct: 286 RCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLI 345
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489
+ +C G +D A + + M GV P+ AL+ + G+ + L H R R
Sbjct: 346 NSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFH--RMVHRG 403
Query: 490 VSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIV 544
+SP D++ + GK + + SL+ D + W+G+ W++
Sbjct: 404 LSP---DIVTYNTLIHGYCKEGKMQESRSLLHDMI------WNGISPDSFTCWVL 449
>gi|302141714|emb|CBI18917.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
MK GI P + +Y + C +G + +A V M++ G P L+RV V+AG+
Sbjct: 241 MKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGR 300
Query: 473 GDRVYYLLHKLR 484
++V + ++++
Sbjct: 301 TEKVLQVYNQMK 312
>gi|125579703|gb|EAZ20849.1| hypothetical protein OsJ_36487 [Oryza sativa Japonica Group]
Length = 607
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D A +V++M+ GI P + +Y + FCN G V++A + + M E GV P E
Sbjct: 237 GIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATY 296
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAAR 509
L+ + D+ Y +L + PS + + K+ A+
Sbjct: 297 RTLVHGVFRCLERDKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAK 345
>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
Length = 695
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A+++ K M G+ P +RS+ + FC G++++A + + M G+ P+ L
Sbjct: 182 DKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCL 241
Query: 464 LRVSVEAGKGDRVYYLLHKLRT 485
+ + GK D L ++R
Sbjct: 242 IGLFARRGKMDHAMAYLREMRC 263
>gi|414868428|tpg|DAA46985.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
Length = 683
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D A +VK+M+ GI P + +Y + FCN V++A V E M E GV E
Sbjct: 229 GIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERMKEKGVSATEATY 288
Query: 461 EALLRVSVEAGKGDRVYYLL 480
+L+ + + +R Y +L
Sbjct: 289 RSLVHGAFRCLEKERAYRML 308
>gi|413952228|gb|AFW84877.1| hypothetical protein ZEAMMB73_259977 [Zea mays]
Length = 453
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 7/150 (4%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
+++E M V + S A R +S G + A +++RM+ G P SY + +
Sbjct: 248 KVWEMMKERNVEPDARSYNAKLRGLVSQGRVEDAAALIERMQKEGPKPDSVSYNELIRGY 307
Query: 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492
CN G +++A V ++M+++G P L+ VEAG+ D H++ T +V
Sbjct: 308 CNEGRLNEAKKVYDNMIKNGYAPNRGTFHTLVPHFVEAGELDHALSCCHEIFTRKCRVQC 367
Query: 493 STAD-VIAKWF------NSKEAARLGKKKW 515
S V+ F +K LG++ +
Sbjct: 368 SLLQGVVTALFAASRVEEAKRIVHLGRENY 397
>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
Length = 795
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 13/150 (8%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G+ D A+ + M G+ P + +Y + C +DKA ++ +HM + GV P+
Sbjct: 214 GEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTY 273
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLI 520
++R G+ + LL K+ S + T ++ +++ ++G+ S+
Sbjct: 274 NIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYY-----CKIGRCAEARSVF 328
Query: 521 KDTMENKGGG-----WHGL--GWLGKGKWI 543
D+M KG +H L G+ KG I
Sbjct: 329 -DSMVRKGQKPNSTIYHILLHGYATKGALI 357
>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
Length = 801
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
+IY +M +N+ ++ R +G D AF ++K M G P +Y ++
Sbjct: 239 KIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFL 298
Query: 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485
C+ V+KA + + M GV P+ L+ +AG ++ +L ++R+
Sbjct: 299 CHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRS 351
>gi|293332227|ref|NP_001169164.1| uncharacterized protein LOC100383014 [Zea mays]
gi|223975267|gb|ACN31821.1| unknown [Zea mays]
Length = 469
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D A +VK+M+ GI P + +Y + FCN V++A V E M E GV E
Sbjct: 24 GIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERMKEKGVSATEATY 83
Query: 461 EALLRVSVEAGKGDRVYYLL 480
+L+ + + +R Y +L
Sbjct: 84 RSLVHGAFRCLEKERAYRML 103
>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
Length = 609
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A D++++M G P SY P L FC +D+A + M+ G YP+ LL
Sbjct: 206 AIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLT 265
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSP 492
+ GK D +L++L S + SP
Sbjct: 266 ALCKDGKVDVAVEILNQL--SSKGCSP 290
>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial [Vitis vinifera]
Length = 531
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%)
Query: 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452
V RM + DMA + MK+ G+ P + + ++ C +D+AC ML+ G
Sbjct: 431 VVRMFCNEERVDMALRVWDEMKAKGVLPGMHMFSTLINSLCYENKLDEACKYFHEMLDMG 490
Query: 453 VYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+ P L + ++ GK D V L KL
Sbjct: 491 IRPPAAMFSNLKQTLLDEGKQDMVLILAQKL 521
>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 8/168 (4%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
LS D K F+ +Y KM D + + A+ G + AF + K M S G
Sbjct: 352 LSRDGK---FEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGS 408
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478
P ++Y + FC GD+ KA + + ML+ G P L+ + G +
Sbjct: 409 LPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMR 468
Query: 479 LLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
LL ++ + K T + F +R GK + SL ME+
Sbjct: 469 LLEIMKGNGLKPDAWTYTELISGF-----SRGGKLEHATSLFYGMMEH 511
>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 8/168 (4%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
LS D K F+ +Y KM D + + A+ G + AF + K M S G
Sbjct: 352 LSRDGK---FEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGS 408
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478
P ++Y + FC GD+ KA + + ML+ G P L+ + G +
Sbjct: 409 LPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMR 468
Query: 479 LLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
LL ++ + K T + F +R GK + SL ME+
Sbjct: 469 LLEIMKGNGLKPDAWTYTELISGF-----SRGGKLEHATSLFYGMMEH 511
>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
Length = 855
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
+IY +M +N+ ++ R +G D AF ++K M G P +Y ++
Sbjct: 239 KIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFL 298
Query: 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485
C+ V+KA + + M GV P+ L+ +AG ++ +L ++R+
Sbjct: 299 CHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRS 351
>gi|413956099|gb|AFW88748.1| hypothetical protein ZEAMMB73_433087 [Zea mays]
gi|413956100|gb|AFW88749.1| hypothetical protein ZEAMMB73_433087 [Zea mays]
Length = 487
Score = 44.3 bits (103), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 48/90 (53%)
Query: 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
MA ++ + M++ G+ L ++ ++ + N+G VD+A + + M+ G P P +L
Sbjct: 32 MASNIKEDMQANGVRLNLVTWSSLINAYANSGLVDRAIEILKEMIRDGCQPTAPCFNIIL 91
Query: 465 RVSVEAGKGDRVYYLLHKLRTSVRKVSPST 494
V++ + DR + L + + S K+S S+
Sbjct: 92 TACVKSCQYDRAFRLFYSWKESGIKISLSS 121
>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
Length = 502
Score = 44.3 bits (103), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D A + M G P + +Y + V C G+V+ A +V + M+ G P
Sbjct: 299 GQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGYIPNVVTY 358
Query: 461 EALLRVSVEAGKGDRVYYLLHKLR 484
L+R AGK DR LL K++
Sbjct: 359 TVLIRGLCHAGKIDRAMKLLDKMK 382
>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
Length = 1563
Score = 44.3 bits (103), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
MK GI P + +Y + C +G + +A V M++ G P L+RV V+AG+
Sbjct: 1308 MKMAGIXPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGR 1367
Query: 473 GDRVYYLLHKLR 484
++V + ++++
Sbjct: 1368 TEKVLQVYNQMK 1379
>gi|449449535|ref|XP_004142520.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
mitochondrial-like [Cucumis sativus]
gi|449518358|ref|XP_004166209.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
mitochondrial-like [Cucumis sativus]
Length = 455
Score = 44.3 bits (103), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%)
Query: 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457
++ G + A DMV++M G P + ++ + V CN+G+VD ++ + + G+ P+
Sbjct: 259 LNAGYLESAKDMVRKMTKEGSVPDIGTFNSLIDVICNSGEVDFCINIFHEVCKLGLCPDI 318
Query: 458 PELEALLRVSVEAGKGDRVYYLLH 481
+ L+ + + G+ D + LLH
Sbjct: 319 NTYKILIPATSKVGRIDEAFRLLH 342
>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
Length = 553
Score = 44.3 bits (103), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A D++++M G P SY P L FC +D+A + M+ G YP+ LL
Sbjct: 318 AIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLT 377
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSP------STADVIAKWFNSKEAARL 510
+ GK D +L++L S + SP + D ++K ++ A +L
Sbjct: 378 ALCKDGKVDVAVEILNQL--SSKGCSPVLITYNTVIDGLSKVGKTERAIKL 426
>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
Japonica Group]
gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
Length = 648
Score = 44.3 bits (103), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A+++ K M G+ P +RS+ + FC G++++A + + M G+ P+ L
Sbjct: 243 DKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCL 302
Query: 464 LRVSVEAGKGDRVYYLLHKLRT 485
+ + GK D L ++R
Sbjct: 303 IGLFARRGKMDHAMAYLREMRC 324
>gi|297734265|emb|CBI15512.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 44.3 bits (103), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 75/175 (42%), Gaps = 11/175 (6%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
R +E+YE+M + N + + + GD +++M+ G +P + +Y +
Sbjct: 241 RCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLI 300
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489
+ +C G +D A + + M GV P+ AL+ + G+ + L H R R
Sbjct: 301 NSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFH--RMVHRG 358
Query: 490 VSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIV 544
+SP D++ + GK + + SL+ D + W+G+ W++
Sbjct: 359 LSP---DIVTYNTLIHGYCKEGKMQESRSLLHDMI------WNGISPDSFTCWVL 404
>gi|302803225|ref|XP_002983366.1| hypothetical protein SELMODRAFT_445481 [Selaginella moellendorffii]
gi|300149051|gb|EFJ15708.1| hypothetical protein SELMODRAFT_445481 [Selaginella moellendorffii]
Length = 758
Score = 44.3 bits (103), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 4/147 (2%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
+S K +Q ++ +M E+P+ + AV R + + +V+ M+S GI
Sbjct: 294 ISTAGKTGQYQLAEMMFSEMNRMEIPVTIVTYDAVIRAVVKGRGVEYGLKLVQNMESRGI 353
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH--GVYPEEPELEALLRVSVEAGKGDRV 476
P YG + +C N ++DKA ++ E ML+ P + + + DR
Sbjct: 354 EPDSAIYGAIVECYCRNSELDKAENLLEQMLKAKPSQRPTAHAFNFIFQACSLTNEQDRA 413
Query: 477 YYLLHKLRTSVRKVSPSTADVIAKWFN 503
+L ++T+ +V P A + N
Sbjct: 414 LRVLRTMKTA--RVPPDICTYTALFCN 438
>gi|328768892|gb|EGF78937.1| hypothetical protein BATDEDRAFT_90333 [Batrachochytrium
dendrobatidis JAM81]
Length = 1019
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 371 GFEIYEKMCLDE---VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
+++ +M D VP +E T +G + +GD D A+ + M+ GI P +++
Sbjct: 463 ALQVFRQMISDPDPIVPDHEVYKTMIGGY-VGLGDFDTAWTWISNMEQDGIKPTEKTFAL 521
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
+ D+D A +V E ML + P E L ALL
Sbjct: 522 FIDAHIARSDLDSAYNVYEQMLSKNIDPSEHILVALL 558
>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
Length = 736
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
+IY +M +N+ ++ R +G D AF ++K M G P +Y ++
Sbjct: 174 KIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFL 233
Query: 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485
C+ V+KA + + M GV P+ L+ +AG ++ +L ++R+
Sbjct: 234 CHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRS 286
>gi|299473414|emb|CBN77812.2| conserved unknown protein (Partial) [Ectocarpus siliculosus]
Length = 1130
Score = 43.9 bits (102), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 360 SEDAKKYA-FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
S DA++ A ++R E+ + +E+P++E+S V G+ D+AF + M+ GI
Sbjct: 656 SRDAERGANWERSMELLREAQENELPISESSFQTVMTDLGFAGEVDLAFSIYDDMRMAGI 715
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456
P L +Y L V N + D+A + + M E + P+
Sbjct: 716 PPSLDTYNRLLGVCEKNKEWDRAFKILDEMSELAIKPD 753
>gi|357455187|ref|XP_003597874.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359582|gb|ABD28711.2| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486922|gb|AES68125.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 822
Score = 43.9 bits (102), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%)
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
N+ S T + GD MA DM+ ++ G P L SYG + G++D A V
Sbjct: 379 NKFSYTPLMHAYCKQGDYVMASDMLFKIAETGDKPDLVSYGAFIHGSVAGGEIDVALMVR 438
Query: 446 EHMLEHGVYPEEPELEALL 464
E M+E GV+P+ L+
Sbjct: 439 EKMMEKGVFPDAQIYNVLM 457
>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
Length = 700
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + F ++ M+ GI + S+G + FC NG + +A ++ + M+ V P
Sbjct: 453 GQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVY 512
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLI 520
+++ +E+G ++ L+ K++ S S T +++ K R + E LI
Sbjct: 513 NSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGL-----CRSSQIDEAEELI 567
Query: 521 KDTMENKG 528
T+ N+G
Sbjct: 568 Y-TLRNQG 574
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A +++ +++ G+ P + SY +S CN GD DKA + + M ++G+ P L
Sbjct: 561 DEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTL 620
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA------DVIAKWFNSKEAARLGKKKWNE 517
+ AG+ + L ++ + V PS++ D + N + A L KK+ +E
Sbjct: 621 VSALASAGRVHDMECLYQQMLH--KNVEPSSSIYGIMVDAYVRCENDSKVASL-KKEMSE 677
>gi|354503492|ref|XP_003513815.1| PREDICTED: mitochondrial ribonuclease P protein 3-like, partial
[Cricetulus griseus]
Length = 470
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 82/227 (36%), Gaps = 41/227 (18%)
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK---GDRV 476
P ++Y + + DV+ A S+ + +++H + P L+A +++
Sbjct: 238 PSKKNYNDCIQGALFHQDVNLAWSLYQELIDHNLIPLLDTLKAFFDFGKHINDDHYSNKL 297
Query: 477 YYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGW 536
+L LR + S A I WF S G W G
Sbjct: 298 LDILLYLRNNQMFPGESLAHSIKTWFESIP---------------------GRQWKG--- 333
Query: 537 LGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNS 590
TTV C CG L I L P E E E + I K+
Sbjct: 334 --------QFTTVQKSGQCSGCGRVLESIHLSPEEYEFLKEKIMRHVIDGGDQYKKTTPQ 385
Query: 591 SFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQK 637
++F+K+++ PF+ V+D NV +N + + VV+ + Q+
Sbjct: 386 ELKRFEKFVNSCPPFDIVIDGLNVAKMVFKNRESQTLLDVVSQLAQQ 432
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+GD D A ++V++M G P +Y + VFC D+++A V + M++ G P+
Sbjct: 348 VGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAIN 407
Query: 460 LEALLRVSVEAGKGDRVYYLLHKL 483
++ +AGK + LL ++
Sbjct: 408 YSTIISGFCKAGKLREAHDLLEQM 431
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 19/205 (9%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPRLRSYGPAL 429
+E+ ++M VP N V + S D A ++ K M+ G P + +Y +
Sbjct: 896 AYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIV 955
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489
+G VD AC + E M+ G P +LL +AGK D LL ++ S
Sbjct: 956 DSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCS 1015
Query: 490 VSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTV 549
+ T + I +LG+ L+++ ++ G +V++T +
Sbjct: 1016 PNIVTYNTIIDGH-----CKLGRIDEAYHLLEEMVDG-----------GCQPNVVTYTVL 1059
Query: 550 GGDALCKCCGEKLAIIDLDPIETEK 574
DA CK CG+ I L + EK
Sbjct: 1060 -LDAFCK-CGKAEDAIGLVEVMVEK 1082
Score = 40.4 bits (93), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 105/267 (39%), Gaps = 36/267 (13%)
Query: 198 LDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLD 257
LDM K+ +V A +L ++G YN ++ G+ K K G+ L+
Sbjct: 1095 LDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVI-------AGLCKATKVHEGVLLLE 1147
Query: 258 TFEVSTMNSTELGDSRDMDNNGQLDYGS-SPMIDKLESNSSYRFDDLDSTFNEKENLGQF 316
+ NN D + + +ID + +YR D FN + G
Sbjct: 1148 QM---------------LSNNCVPDIVTFNTIIDAM--CKTYRVDIAYELFNLIQESGCT 1190
Query: 317 SN-------GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQ 369
N H S+ D L R + +RK+ S D + + + K
Sbjct: 1191 PNLVTYNSLVHGLCKSRRFDQAEYLLR---EMTRKQGCSPDIITYNTV-IDGLCKSKRVD 1246
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
R ++++ +M D + ++ + + V D A ++++ M G +P +YG +
Sbjct: 1247 RAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLI 1306
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPE 456
FC G++DKA + + +L G YP+
Sbjct: 1307 DGFCKTGNLDKALEILQLLLSKGSYPD 1333
Score = 40.0 bits (92), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 6/162 (3%)
Query: 327 LLDGRSNLERGPDDQSRKKDWSIDNQDADEI-----RLSEDAKKYAFQRGFEIYEKMCLD 381
+++G S +R DD R + +DN A + L K + + E+M
Sbjct: 236 MINGLSKSDR-LDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTR 294
Query: 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441
P + S T V + D A ++ +M G P + +YG + FC GD+D A
Sbjct: 295 GCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGA 354
Query: 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+ M E G P ++ V +R + +L +
Sbjct: 355 VELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMM 396
>gi|357114607|ref|XP_003559090.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Brachypodium distachyon]
Length = 486
Score = 43.9 bits (102), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 47/86 (54%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
+MA + K M+ P + ++ ++ C+ G+V +AC + E M+E G+ P L
Sbjct: 397 EMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKL 456
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRK 489
++ ++ G+ D + +L+ K++ +++
Sbjct: 457 RQLLLKEGRKDVLEFLVDKMKILIQE 482
>gi|344256363|gb|EGW12467.1| Mitochondrial ribonuclease P protein 3 [Cricetulus griseus]
Length = 471
Score = 43.9 bits (102), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 82/227 (36%), Gaps = 41/227 (18%)
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK---GDRV 476
P ++Y + + DV+ A S+ + +++H + P L+A +++
Sbjct: 238 PSKKNYNDCIQGALFHQDVNLAWSLYQELIDHNLIPLLDTLKAFFDFGKHINDDHYSNKL 297
Query: 477 YYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGW 536
+L LR + S A I WF S G W G
Sbjct: 298 LDILLYLRNNQMFPGESLAHSIKTWFESIP---------------------GRQWKG--- 333
Query: 537 LGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNS 590
TTV C CG L I L P E E E + I K+
Sbjct: 334 --------QFTTVQKSGQCSGCGRVLESIHLSPEEYEFLKEKIMRHVIDGGDQYKKTTPQ 385
Query: 591 SFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQK 637
++F+K+++ PF+ V+D NV +N + + VV+ + Q+
Sbjct: 386 ELKRFEKFVNSCPPFDIVIDGLNVAKMVFKNRESQTLLDVVSQLAQQ 432
>gi|326520119|dbj|BAK03984.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 485
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 47/86 (54%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
+MA + K M+ P + ++ ++ C+ G+V +AC + E M+E G+ P L
Sbjct: 396 EMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKL 455
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRK 489
++ ++ G+ D + +L+ K++ +++
Sbjct: 456 RQLLLKEGRKDVLEFLVDKMKILIQE 481
Score = 39.3 bits (90), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 5/111 (4%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
M+ GI P + Y ++ FC D A V + M HG+ P +L + GK
Sbjct: 301 MQKDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGITPNSRTWNIILNKLISLGK 360
Query: 473 GDRVYYLLHKLRTSVRKVSP--STADVIAKWFNSKEAARLGKKKWNESLIK 521
D Y + ++ +++ P T ++ K F + + K W +K
Sbjct: 361 DDEAYRVFRRM---IKRCQPDSDTYTMMIKMFCENDRLEMALKVWKYMRLK 408
>gi|296087527|emb|CBI34116.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 4/126 (3%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G DMA + + +K LG+NP +YG + C G+ ++A V M E GV P
Sbjct: 206 GKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTC 265
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNS----KEAARLGKKKWN 516
+ + D Y L LR + + + + F S KEA + N
Sbjct: 266 STYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVN 325
Query: 517 ESLIKD 522
E + D
Sbjct: 326 EGIAPD 331
>gi|297744686|emb|CBI37948.3| unnamed protein product [Vitis vinifera]
Length = 1550
Score = 43.9 bits (102), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
A R F++ +M + P++ +T A+ + + G D A ++ K + I
Sbjct: 1047 AVDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGQVDRAREVYKMIDQYNIKGTPEV 1106
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y A+S GD + A SV M GV P+E L AL+ V+ AGK D + ++ + R
Sbjct: 1107 YTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEMFLSALIDVAGHAGKLDAAFEVIQEAR 1166
>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
Length = 585
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
+ A+++ +++ G+ P + +Y ++ FC NG VD A + + M E+G P AL
Sbjct: 464 ETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSAL 523
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAAR 509
L + K + V LLHK+ ++ S ++ + E R
Sbjct: 524 LHGFYKNNKLEEVVKLLHKMIQKDVSLAASIYTIVEDMVSKDEKCR 569
>gi|15233142|ref|NP_191058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75210358|sp|Q9SV46.1|PP282_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g54980, mitochondrial; Flags: Precursor
gi|4678295|emb|CAB41086.1| putative protein [Arabidopsis thaliana]
gi|28393168|gb|AAO42016.1| unknown protein [Arabidopsis thaliana]
gi|332645801|gb|AEE79322.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 851
Score = 43.9 bits (102), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%)
Query: 375 YEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434
YE+MC + + N + T++ D A +M MK+ G+ + +YG + FC
Sbjct: 607 YEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCK 666
Query: 435 NGDVDKACSVEEHMLEHGVYPEEPELEALL 464
+++ A ++ +LE G+ P +P +L+
Sbjct: 667 RSNMESASALFSELLEEGLNPSQPIYNSLI 696
>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Brachypodium distachyon]
Length = 904
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
F F I+E+M + + A + MG+ D A ++++M+ + P R++ P
Sbjct: 495 FANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRP 554
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
+ F GD+ +A ++ + M G P AL+ ++ + +R +L+K+ S+
Sbjct: 555 IIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKM--SI 612
Query: 488 RKVSPS 493
++P+
Sbjct: 613 AGITPN 618
Score = 40.0 bits (92), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
GD A D++K+MK G+ P + +Y ++ C GD+ +A V E M + G+ P
Sbjct: 703 GDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEMADVGLKPNLKTY 762
Query: 461 EALLRVSVEAGKGDR 475
L++ +A DR
Sbjct: 763 TTLIKGWAKASLPDR 777
>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 747
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + A +++ MK G++P + SY LS FC + DVD+A V+ M+E G+ P+
Sbjct: 429 GKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITY 488
Query: 461 EALLR 465
+L++
Sbjct: 489 SSLIQ 493
>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like, partial [Cucumis sativus]
Length = 602
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 71/156 (45%), Gaps = 11/156 (7%)
Query: 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425
YA ++GFEI E+ C + L A+ R G+ ++ + +++M GI R+ S+
Sbjct: 143 YARKKGFEIDERSCFE-------FLLALKR----SGNMELCVEFLRQMVDSGIEIRVCSW 191
Query: 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485
+ C G+V +A ++ + ++ G P LL +E V +L +
Sbjct: 192 TAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEK 251
Query: 486 SVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIK 521
+V + +T ++ +W++ +K ++E L K
Sbjct: 252 NVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKK 287
>gi|242049534|ref|XP_002462511.1| hypothetical protein SORBIDRAFT_02g027050 [Sorghum bicolor]
gi|241925888|gb|EER99032.1| hypothetical protein SORBIDRAFT_02g027050 [Sorghum bicolor]
Length = 643
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A D++ +M LG+ P + ++ +S +C+ D++ A V E M + GVYP E L+
Sbjct: 406 AEDLLLQMSHLGVCPNVVTFTTVISGWCSVADMESAMRVYEKMCKSGVYPNLRTFETLIW 465
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIA 499
E + + +L +R + K ST +IA
Sbjct: 466 GYSEQKQPWKAEEVLQMMRETGVKPKESTHRLIA 499
>gi|222624701|gb|EEE58833.1| hypothetical protein OsJ_10405 [Oryza sativa Japonica Group]
Length = 483
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%)
Query: 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
+A D+ + M+S G+ L ++ ++ + N+G VD+A + E M G P P +L
Sbjct: 187 LASDIKQDMQSAGVRLNLVTWSSLINAYANSGLVDRAIEILEEMTRDGCQPTAPCFNIIL 246
Query: 465 RVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493
V++ + DR + L + + K+S S
Sbjct: 247 TGCVKSCQYDRAFRLFYDWKEYGVKISLS 275
>gi|242038757|ref|XP_002466773.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
gi|241920627|gb|EER93771.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
Length = 487
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 47/86 (54%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
+MA + K M+ P + ++ ++ C+ G+V +AC + E M+E G+ P L
Sbjct: 398 EMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKL 457
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRK 489
++ ++ G+ D + +L+ K++ +++
Sbjct: 458 RQLLLKEGRKDVLDFLVEKMKMLIQE 483
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 5/105 (4%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
M+ GI P + Y ++ FC D A V + M HG+ P +L + GK
Sbjct: 303 MEKDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGISPNSRTWNIILNTLISLGK 362
Query: 473 GDRVYYLLHKLRTSVRKVSP--STADVIAKWFNSKEAARLGKKKW 515
D Y + R +++ P T ++ K F + + K W
Sbjct: 363 DDEAYRV---FRNMIKRCKPDSDTYTMMIKMFCENDKIEMALKVW 404
>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
Length = 1302
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+R F++ + L +P E + T++ GD D+A MK G P +YG
Sbjct: 1119 ERLFQLVVSLGL--IPTKE-TYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSL 1175
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEE 457
+S C VD+AC + E M++ G+ P E
Sbjct: 1176 ISGLCKKSMVDEACKLYEAMIDRGLSPPE 1204
>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 43.5 bits (101), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM--AFDMVKRMKSLGINPRLRSYGPALS 430
EI+ + C V ++++ R DG + + ++VK MK G+ P Y P ++
Sbjct: 210 EIFSRGCEPNVVTYSILISSLCR------DGKIEESVNLVKVMKEKGLTPDAYCYDPLIA 263
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
FC G +D A + M+ G P+ ++ + G GD + KL
Sbjct: 264 AFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKL 316
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 373 EIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
EI+ K LDEV P N +S + S GD A M+ +M S GI+P + +Y +S
Sbjct: 311 EIFGK--LDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLIS 368
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYP 455
C +G VD+A + ML P
Sbjct: 369 CLCRDGMVDEAIGLLADMLSGRFQP 393
>gi|224089803|ref|XP_002308816.1| predicted protein [Populus trichocarpa]
gi|222854792|gb|EEE92339.1| predicted protein [Populus trichocarpa]
Length = 700
Score = 43.5 bits (101), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ F+IY +M + +N ++ M +G D A ++ + MKS GI P ++
Sbjct: 368 EDAFKIYREMKEKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMKSSGIKPDSWTFSSM 427
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476
+++F G V +A + M E G P L +L++ +A + D V
Sbjct: 428 ITIFSCCGKVSEAENTLNEMFEAGFQPNIFILTSLIQCYGKAQRIDDV 475
>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 920
Score = 43.5 bits (101), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 408 DMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467
D+ M + G++P L +YG ++ +C G++ +AC++ M+ +G+ P AL+
Sbjct: 590 DIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCF 649
Query: 468 VEAGKGDRVYYLLHKL 483
+ GK D +L KL
Sbjct: 650 YKEGKVDEANLVLQKL 665
>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
Length = 1039
Score = 43.5 bits (101), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++ +M+ GI P + +Y + C + D A + E M ++G+ P+E L
Sbjct: 516 AMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTD 575
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVS-PSTADVIAKWFNSKEAARLGKKKWNESLIKDT 523
++G+ + Y L K + KV+ S D +K N++ AA L +K NE D+
Sbjct: 576 ALCKSGRAEEAYSFLVKKGVVLTKVTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADS 634
>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Cucumis sativus]
Length = 606
Score = 43.5 bits (101), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 71/156 (45%), Gaps = 11/156 (7%)
Query: 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425
YA ++GFEI E+ C + L A+ R G+ ++ + +++M GI R+ S+
Sbjct: 147 YARKKGFEIDERSCFE-------FLLALKR----SGNMELCVEFLRQMVDSGIEIRVCSW 195
Query: 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485
+ C G+V +A ++ + ++ G P LL +E V +L +
Sbjct: 196 TAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEK 255
Query: 486 SVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIK 521
+V + +T ++ +W++ +K ++E L K
Sbjct: 256 NVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKK 291
>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 748
Score = 43.5 bits (101), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G+ + A ++K M+ GI+P +Y + +C GD+DKA + + ML+ G+ P
Sbjct: 517 GNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTF 576
Query: 461 EALLRVSVEAGK---GDRV 476
L+ G GDR+
Sbjct: 577 NVLMNGFCMLGMLEDGDRL 595
>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
Length = 939
Score = 43.5 bits (101), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 408 DMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467
D+ M + G++P L +YG ++ +C G++ +AC++ M+ +G+ P AL+
Sbjct: 590 DIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCF 649
Query: 468 VEAGKGDRVYYLLHKL 483
+ GK D +L KL
Sbjct: 650 YKEGKVDEANLVLQKL 665
>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 719
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 379 CLDEVPM-----NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433
C E+ M N + + +GD + ++++M++ GINP + S+ + FC
Sbjct: 554 CFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFC 613
Query: 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
G V+ A + ML G+ P+ A ++V ++G+
Sbjct: 614 RMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGR 652
>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 584
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + A ++++ MK G+ P Y P ++ FC G +D A E+M+ G P+
Sbjct: 327 GKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNY 386
Query: 461 EALLRVSVEAGKGDRVYYLLHKL 483
++ GK D+ + KL
Sbjct: 387 NTIMAGLCRTGKADQALEVFEKL 409
Score = 39.3 bits (90), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 370 RGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
+ E++EK LDEV P N +S + S GD A +M+ ++ + GI+P +Y
Sbjct: 401 QALEVFEK--LDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNS 458
Query: 428 ALSVFCNNGDVDKA 441
+S C +G VD+A
Sbjct: 459 LISCLCRDGMVDEA 472
>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
Length = 953
Score = 43.5 bits (101), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
GD D A+++ +RMK+ G+ P + ++ + +C +++A ++ E M+ GV P+ L
Sbjct: 238 GDADAAWEVAERMKADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTL 297
Query: 461 EALLRVSVEAGKGDRVYYLLHKL 483
AL+ G+ Y L ++
Sbjct: 298 SALVDGLCRDGRFSEAYALFREM 320
>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05670, mitochondrial-like [Cucumis sativus]
Length = 748
Score = 43.5 bits (101), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G+ + A ++K M+ GI+P +Y + +C GD+DKA + + ML+ G+ P
Sbjct: 517 GNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTF 576
Query: 461 EALLRVSVEAGK---GDRV 476
L+ G GDR+
Sbjct: 577 NVLMNGFCMLGMLEDGDRL 595
>gi|224002623|ref|XP_002290983.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972759|gb|EED91090.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 192
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 24/93 (25%)
Query: 666 LIEKWKNADALYATPTGSNDDWYWLYAAIK------------------------FKCLLV 701
++E K D +Y P DD YW+ A+ + +++
Sbjct: 42 MLESLKEKDQMYVVPPMCLDDLYWMLASTSNQTTATNGTSIDVPKNNDEGRYPGLRPMVI 101
Query: 702 TNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSD 734
+ND+MRDH +LL F RW H V +++++
Sbjct: 102 SNDKMRDHRMELLEERAFRRWCCSHIVNYNYTE 134
>gi|296803631|ref|XP_002842668.1| pentatricopeptide repeat protein [Arthroderma otae CBS 113480]
gi|238846018|gb|EEQ35680.1| pentatricopeptide repeat protein [Arthroderma otae CBS 113480]
Length = 807
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461
DG++ F+++ ++ +G+ P L Y +S + D+D A + + M GV P+
Sbjct: 439 DGNITFEILPQILQMGVQPDLSIYNIVVSNASKSDDLDTALQIVQLMESQGVTPDSHTYL 498
Query: 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNS 504
+L +V ++V ++LHK+ T V+ +S + +++K ++
Sbjct: 499 LILHNAVRLRDYEKVDHILHKI-TKVKTLS-THPHIVSKTLHA 539
>gi|302799808|ref|XP_002981662.1| hypothetical protein SELMODRAFT_115078 [Selaginella moellendorffii]
gi|300150494|gb|EFJ17144.1| hypothetical protein SELMODRAFT_115078 [Selaginella moellendorffii]
Length = 585
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 367 AFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425
A +R FE++ ++ + + N ++ ++ GDGD A+++ M+ GI Y
Sbjct: 184 AVKRAFEVFTELKSESLINPNHVTMCSLIDACSKAGDGDSAYEVYTMMRKRGIGGCPEPY 243
Query: 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
A+ ++G++++A S+ + M + GV +E AL+ V+ AGK + + +L ++
Sbjct: 244 TAAVHACSSSGNLERAFSIYDDMKKDGVKADEIFFSALIDVAGHAGKINCAFDVLQEV 301
>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 724
Score = 43.5 bits (101), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457
GD D+A MK G P +YG +S C VD+AC + E M++ G+ P E
Sbjct: 570 GDFDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPE 626
>gi|297737723|emb|CBI26924.3| unnamed protein product [Vitis vinifera]
Length = 215
Score = 43.5 bits (101), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%)
Query: 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452
V RM + DMA + MK+ G+ P + + ++ C +D+AC ML+ G
Sbjct: 115 VVRMFCNEERVDMALRVWDEMKAKGVLPGMHMFSTLINSLCYENKLDEACKYFHEMLDMG 174
Query: 453 VYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+ P L + ++ GK D V L KL
Sbjct: 175 IRPPAAMFSNLKQTLLDEGKQDMVLILAQKL 205
>gi|225447562|ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like [Vitis vinifera]
Length = 616
Score = 43.5 bits (101), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 367 AFQRG---FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423
+ QRG Y +M + N +L V G + A ++ KRM+++G +P +
Sbjct: 291 SLQRGDIALTFYREMQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKRMETMGFSPTIT 350
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
SY ++ +CN G ++ ++ M ++GV P++ L+ GK
Sbjct: 351 SYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGK 399
Score = 39.3 bits (90), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442
VP N ++ +A+ + + AF + K M G +P ++ +S FC N D D A
Sbjct: 486 VP-NSSTFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGAV 544
Query: 443 SVEEHMLEHGVYPEEPELEALLR 465
V M E + P+ L L R
Sbjct: 545 EVVREMSERSIAPDSDTLSELCR 567
>gi|440802458|gb|ELR23387.1| pentatricopeptide repeat domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 667
Score = 43.5 bits (101), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A D+V + LG+ P +++Y SV D+D A ++ + M E V P+ P AL+
Sbjct: 268 ARDIVSSFRILGVTPSVKTYHKLFSVCKRTHDLDAALNLWDQMREEQVEPDLPIFNALMD 327
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPS 493
+ G ++V+ LL ++ + +P+
Sbjct: 328 IYAHRGDLEQVHQLLDAMKAQGLEPTPT 355
>gi|297834586|ref|XP_002885175.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331015|gb|EFH61434.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 653
Score = 43.5 bits (101), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
F+ +++M + NE + + R + S GD + + MK G++P L +Y +
Sbjct: 508 AFDCFKEMLEWGIKPNEITYNILIRSSCSTGDTGRSVKLFANMKESGLSPNLYAYNAIIQ 567
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
FC V KA + + ML G+ P+ L++ E+G+
Sbjct: 568 SFCKMKKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGR 609
>gi|242038895|ref|XP_002466842.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
gi|241920696|gb|EER93840.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
Length = 1090
Score = 43.5 bits (101), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Query: 379 CLDEVP--MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436
CL ++P ++E + A+ G D A D+ ++M P + +Y LS FC G
Sbjct: 564 CLLDIPSAVDEKTFNALLLGICKYGTLDEALDICEKMVKNNCLPDIHTYTILLSGFCRKG 623
Query: 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+ A + + MLE GV P+ LL + G+ Y+ ++
Sbjct: 624 KILPALVMLQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEI 670
>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Brachypodium distachyon]
Length = 627
Score = 43.5 bits (101), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A +++ M++ G+ P + +YG + C+ DVDKA + M E G+ P LL+
Sbjct: 132 AVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQ 191
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTME 525
+AG+ + V + ++ S R + P DV+ R GK K ++ ME
Sbjct: 192 GYCKAGRWECVSKVFEEM--SGRGIEP---DVVMYTGLIDSLCREGKVKKATQVMDKMME 246
>gi|297723045|ref|NP_001173886.1| Os04g0349600 [Oryza sativa Japonica Group]
gi|255675357|dbj|BAH92614.1| Os04g0349600, partial [Oryza sativa Japonica Group]
Length = 260
Score = 43.5 bits (101), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468
++ M S+GI P YG + +C NG +D A +V ML GV P +L
Sbjct: 7 LLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLF 66
Query: 469 EAGKGDRVYYLLHKLRTSVRKVSPSTADVI 498
+A + + H++ S VS T V+
Sbjct: 67 QARRTTAAKKMFHEMIESGTTVSIQTYGVV 96
>gi|108707552|gb|ABF95347.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215765857|dbj|BAG87554.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 451
Score = 43.5 bits (101), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%)
Query: 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
+A D+ + M+S G+ L ++ ++ + N+G VD+A + E M G P P +L
Sbjct: 4 LASDIKQDMQSAGVRLNLVTWSSLINAYANSGLVDRAIEILEEMTRDGCQPTAPCFNIIL 63
Query: 465 RVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493
V++ + DR + L + + K+S S
Sbjct: 64 TGCVKSCQYDRAFRLFYDWKEYGVKISLS 92
>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
[Vitis vinifera]
gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
Length = 878
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
F+ E+++KM + NE S + R G A +++ M S G+ P Y
Sbjct: 167 FEDAREVFDKMGVKGCRPNEFSFGILVRGYCRAGLSMRALELLDGMGSFGVQPNKVIYNT 226
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
+S FC G ++A + E M E G++P+ + + AGK
Sbjct: 227 LISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGK 271
Score = 40.4 bits (93), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 389 SLTAVGRMAMSMGDGDMAFD---MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
SL + + +G + F+ ++ MK GI P + +Y +S C G + A S+
Sbjct: 597 SLQTYNSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLCEGGRIKDATSLL 656
Query: 446 EHMLEHGVYPEEPELEALLRVSVEA 470
+ ML+ G+ P L++ +A
Sbjct: 657 DEMLQKGISPNISSFRLLIKAFCKA 681
>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 443
Score = 43.1 bits (100), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A D++++M G P SY P L FC +++A M G YP+ LL
Sbjct: 208 AIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLT 267
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSP------STADVIAKWFNSKEAARL 510
+ GK D LL++L S + SP + D ++K + +AA+L
Sbjct: 268 ALCKDGKVDAAVELLNQL--SSKGCSPVLITYNTVIDGLSKVGKTDQAAKL 316
>gi|224080562|ref|XP_002306163.1| predicted protein [Populus trichocarpa]
gi|222849127|gb|EEE86674.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 43.1 bits (100), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 10/196 (5%)
Query: 297 SYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLER-----GPDDQSRKKDWSIDN 351
S + D + F+E N G N H L+DG + + G R K+ D
Sbjct: 90 SGKVDAMFEVFHEMVNAGVEPNVHTY--GALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 147
Query: 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFDM 409
+ + ++ + A R F++ +M + P++ +T A+ + + G D A ++
Sbjct: 148 VVFNAL-ITACGQSGAVDRAFDVLAEMTGEAQPIDPDHITVGALIKACTNAGQVDRAQEV 206
Query: 410 VKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469
+ I Y A++ GD + AC V + M GV P+E L AL+ V+
Sbjct: 207 YNMVHKYNIKGTPEVYTIAINSCSQIGDWEFACKVFDDMTRKGVVPDEMFLSALIDVAGH 266
Query: 470 AGKGDRVYYLLHKLRT 485
AGK D + ++ + +
Sbjct: 267 AGKMDAAFEIIQEAKA 282
>gi|297791025|ref|XP_002863397.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309232|gb|EFH39656.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 711
Score = 43.1 bits (100), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 4/183 (2%)
Query: 364 KKYAFQRGFEIYEKMCL----DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
K F R F + E+M L D V ++ + + + A D A + +RM G+
Sbjct: 194 KSLRFGRQFYLIEEMALEMVKDGVELDNITYSTIITCAKRCNFYDKAIEWFERMYKTGLM 253
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
P +Y L V+ V++ S+ E + G P+ L ++ EAG D + Y+
Sbjct: 254 PDEVTYSAILDVYSKLRKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYV 313
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539
L ++++ K + + + + L + +NE L N+ + GK
Sbjct: 314 LQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGK 373
Query: 540 GKW 542
+W
Sbjct: 374 ARW 376
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 355 DEIRLSEDAKKYAFQRGFE----IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMV 410
DE+ S Y+ R E +YE+ + + + +G+M GD D ++
Sbjct: 255 DEVTYSAILDVYSKLRKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVL 314
Query: 411 KRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466
+ MKS+ + P + Y L G A S+ MLE G+ P E L AL+++
Sbjct: 315 QEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKI 370
>gi|147776740|emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]
Length = 422
Score = 43.1 bits (100), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 33/142 (23%)
Query: 380 LDEVPMNEAS--LTAVGRMAMSMGDG---DMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434
L+++P N S L + G + + D D A + V+ M S G +P + ++ FCN
Sbjct: 281 LEDMPSNGCSPNLMSYGTLVSGLCDQGLYDEAKNYVEEMLSKGFSPHFSVFHALINGFCN 340
Query: 435 NGDVDKACSVEEHMLEHG----------VYPEEPELEALLRVS----------------- 467
G +++AC V ML HG + P E++ L+R+
Sbjct: 341 VGKLEEACEVLXEMLRHGEAXHTETWVAIIPRICEVDKLVRMENIFDEXLKLEITPNTRL 400
Query: 468 VEAGKGDRVYYLLHKLRTSVRK 489
VEAG G Y++ K+R RK
Sbjct: 401 VEAGIGLE-EYVIRKVRDKSRK 421
Score = 40.0 bits (92), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
AFD+ K G++P +SY +S FC NGD+ A ++ M + V P+ L++
Sbjct: 137 AFDLFKSAHRYGVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRILMQ 196
Query: 466 VSVEAGKGDRVYYLL 480
+ +R LL
Sbjct: 197 GLCRKSQVNRAVDLL 211
>gi|168024390|ref|XP_001764719.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684013|gb|EDQ70418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1020
Score = 43.1 bits (100), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
IY+ + D V +E +A+ A GD D AF ++ M+ G+ P Y +
Sbjct: 502 ALAIYDDLLKDGVKPDEVFFSALVDAAGHSGDVDKAFSILDIMRKSGMKPGAVVYSSLMG 561
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
V N G+ +K V E + + P AL+ EA + DR +L+ L+ + R
Sbjct: 562 VCSNLGEWEKGLEVYEGIRSSKLRPTVSTYNALMTALCEAKQFDRALSVLNDLKDAGR 619
Score = 39.3 bits (90), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 7/161 (4%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
+S AK R E+Y+ M ++V A TA GD D A + + G+
Sbjct: 455 ISACAKGGEVGRALEVYQSMRENDVKGFLACYTAAVHACSQKGDLDYALAIYDDLLKDGV 514
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478
P + + ++GDVDKA S+ + M + G+ P +L+ V G+ ++
Sbjct: 515 KPDEVFFSALVDAAGHSGDVDKAFSILDIMRKSGMKPGAVVYSSLMGVCSNLGEWEKGLE 574
Query: 479 LLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESL 519
+ +R+S K+ P+ + +N+ A K+++ +L
Sbjct: 575 VYEGIRSS--KLRPTVST-----YNALMTALCEAKQFDRAL 608
>gi|225464790|ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
mitochondrial [Vitis vinifera]
Length = 817
Score = 43.1 bits (100), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 4/126 (3%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G DMA + + +K LG+NP +YG + C G+ ++A V M E GV P
Sbjct: 206 GKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTC 265
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNS----KEAARLGKKKWN 516
+ + D Y L LR + + + + F S KEA + N
Sbjct: 266 STYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVN 325
Query: 517 ESLIKD 522
E + D
Sbjct: 326 EGIAPD 331
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456
G+ D A +++RM +L + P YG + FC +GD+ +A V + ++E G+ P+
Sbjct: 587 GEYDKALILLERMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPD 642
>gi|325191102|emb|CCA25588.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 945
Score = 43.1 bits (100), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 626 RVNAVVNGIRQKFPSKKW----PLIVLHNRRITGHKMDQPVNRAL-IEKWKNADALYATP 680
R A ++ Q+FPS + P LH+ T + N A+ +++ + + TP
Sbjct: 673 RTEATIDFFGQEFPSARCVAFAPNFWLHS---TTNSASLSGNDAVRLQQLIDENTAVLTP 729
Query: 681 TGSNDDWYWLYAAIKFKCLLVTNDEMRDH-----TFQLLGNDFFPRWKERHQVRFSFSDA 735
+ ++DD+Y + AIK +VTND RDH FQ G W H + +SF
Sbjct: 730 SHAHDDYYVIDYAIKHDGFIVTNDLFRDHIAKCRVFQ--GQVLTTAWVRYHCIDYSF--L 785
Query: 736 GPEF 739
G EF
Sbjct: 786 GNEF 789
>gi|260891608|ref|ZP_05902871.1| Sel1 repeat family protein [Leptotrichia hofstadii F0254]
gi|260858618|gb|EEX73118.1| Sel1 repeat family protein [Leptotrichia hofstadii F0254]
Length = 532
Score = 43.1 bits (100), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 376 EKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF-CN 434
+K+ L+ V NE ++ + G+G+ A DM ++ SLG+ G + N
Sbjct: 304 QKLFLEAVQYNERGYLSLAKSYYVTGNGEKAKDMYEKAYSLGVKEAAYELGKYFDIVEEN 363
Query: 435 NGDVDKACSVEEHMLE-HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493
+ +K + + M + +Y L L S E GK + Y L++ + + K +P+
Sbjct: 364 EKEAEKWYKIGQEMGDAKSIYK----LGILYECSREFGKSEEETYKLYE-KAANMKYAPA 418
Query: 494 TADVIAKWFNSKEAARLGKKKWNESLIKDT 523
+D+I ++N+++ +R K+W ++ +T
Sbjct: 419 ISDMI--YYNNRQESRNKSKEWAFKVLNET 446
>gi|255546727|ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546418|gb|EEF47918.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 809
Score = 43.1 bits (100), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
DMA + +++K+ G+NP +Y A+ FC G++ +A V M E GV P
Sbjct: 201 DMAIAIYRQLKAFGLNPNDYTYTIAIKGFCRKGNLAEAIDVFRDMEESGVTPNSFSYTTF 260
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDT 523
+ G+ D + +L + + + V+ + F S+ K K ES++++
Sbjct: 261 IEGLCLHGRSDLGFKVLQDVINAKIPMDVFAYTVVIRGFCSEM-----KLKEAESILRE- 314
Query: 524 MENKG 528
ME +G
Sbjct: 315 MEKQG 319
>gi|225427240|ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
chloroplastic [Vitis vinifera]
Length = 723
Score = 43.1 bits (100), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%)
Query: 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448
+ +G+M GD D +++ MKSLG+ P L Y L G A S+ E M
Sbjct: 306 AFAVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFEEM 365
Query: 449 LEHGVYPEEPELEALLRV 466
+ GV P+ L AL+++
Sbjct: 366 VGSGVIPDAKTLTALVKI 383
>gi|326495786|dbj|BAJ85989.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 43.1 bits (100), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEH 447
A L A R A S A D KRM G+ P + SYG LS D+A V EH
Sbjct: 394 AVLLACSRAAES----SAAVDTFKRMIDRGLKPDVVSYGALLSALEKGRLYDEALRVWEH 449
Query: 448 MLEHGVYPEEPELEAL-LRVSVEAGKGD 474
M + GV +P L A + S+ AGKGD
Sbjct: 450 MRKVGV---DPNLHAYTILASIYAGKGD 474
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A + + M+ +G++P L +Y S++ GD KA +V ML + P A+
Sbjct: 441 DEALRVWEHMRKVGVDPNLHAYTILASIYAGKGDHGKADAVLRDMLSAKIEPTVVTFNAI 500
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492
+ G+G + H+++ + KV P
Sbjct: 501 ITACWRGGEGGAAFEWFHRMK--MHKVEP 527
>gi|147778212|emb|CAN76479.1| hypothetical protein VITISV_028175 [Vitis vinifera]
Length = 1173
Score = 43.1 bits (100), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 381 DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440
D+V MN AV G D+A ++ G++P +Y ++ C +G D+
Sbjct: 387 DKVTMN-----AVLCFFCKAGMVDVALELYNSRAEFGLSPNSMAYNYLINTLCGDGSTDE 441
Query: 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495
A V +H LE G +P + L + GK D++ L+ L R + PS +
Sbjct: 442 AYHVLKHSLEQGYFPGKKTFSILADALCQEGKLDKMKELV--LVALDRNIMPSAS 494
>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
Length = 1013
Score = 43.1 bits (100), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 8/173 (4%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
+ ++M +PM+ + G D A ++ MK G++P + +Y P +
Sbjct: 188 ALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIV 247
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL---LHKLRTSV 487
+C V++A + E M+ +GV + L AL+ G+ Y L + K+ +
Sbjct: 248 YYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAP 307
Query: 488 RKVSPST-ADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539
V+ T D +AK KE L + + ++ D + + WLGK
Sbjct: 308 NHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTA----LMDWLGK 356
>gi|356509834|ref|XP_003523650.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 472
Score = 43.1 bits (100), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G D A ++ M S G+ P +++YG ++ +C +A + M+ GV P
Sbjct: 268 VGKSDEAVKHLREMVSRGMKPDVKAYGVVVNEYCKIRKPSEAVLLLREMVVRGVKPNVSS 327
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP---STADVIAKWFNSKEAARLGKKKWN 516
A+ RV V+ GK D +LL ++ SP S VI K G+ +
Sbjct: 328 FNAVFRVLVDEGKIDEGLHLLKQMPK--MGCSPNFLSYCTVICGLCEVK-----GRMQQV 380
Query: 517 ESLIKDTMEN 526
E L+ + ++N
Sbjct: 381 EELVSNMLQN 390
>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
Length = 902
Score = 43.1 bits (100), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
R FEI +M + ++ + + R +G D A ++ M GI P L +Y
Sbjct: 747 IDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNT 806
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474
+S + GDV A + M+ G P AL++ + G+GD
Sbjct: 807 LISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGD 853
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 399 SMGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-VYPE 456
S G A D+++ M+ G I P +YG +S +C G VD+A V + ML G V PE
Sbjct: 531 SRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPE 590
Query: 457 EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495
AL+ + GK D LL++ R R V+ + A
Sbjct: 591 AVMYNALIGGYCDQGKLDTA--LLYRDRMVERGVAMTVA 627
>gi|449516876|ref|XP_004165472.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g01390-like [Cucumis sativus]
Length = 737
Score = 43.1 bits (100), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 54/111 (48%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433
++++M + ++ + T++ + GD D A + K MK+ G +P + SY + +
Sbjct: 223 VFQQMKEKGIKIDAVTYTSLMHWRSNSGDVDGAIKVWKEMKANGCHPTVVSYTAYIKILL 282
Query: 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
+NG +++A + + ML+ G+ P L+ + GK + K++
Sbjct: 283 DNGQINEATATYKKMLQSGLSPNCCTYTILMEYLIGEGKCKEALDIFSKMQ 333
>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Glycine max]
Length = 678
Score = 43.1 bits (100), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%)
Query: 375 YEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434
+++M D + + + +G D A +V++MK G P + +Y + FC
Sbjct: 202 FQQMAADNCVADRFTYNTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCI 261
Query: 435 NGDVDKACSVEEHMLEHGVYPEEPELEALL 464
VD+A V E M + GVYP E + AL+
Sbjct: 262 ASRVDEAFGVFETMKDSGVYPNEATVRALV 291
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ E + +M + N + R ++GD + +++RM+ GI+P SY
Sbjct: 516 EEALECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNAL 575
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
+ +FC V+KA + + M G+ P+ A + E+G+
Sbjct: 576 IQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGR 619
>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 43.1 bits (100), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 14/156 (8%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
G+ ++EKM +N A TA+ G+ A + +RMK G+ P + +YG ++
Sbjct: 291 GYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEGLEPDVVTYGVVVN 350
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV--EAGKGDRVYYLLHKLRTSVR 488
C +G +D+A E +GV + A+L S+ GK RV+ V+
Sbjct: 351 CMCKSGRLDEAMEYLEFCRVNGV-----AVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVK 405
Query: 489 KVSP-------STADVIAKWFNSKEAARLGKKKWNE 517
K P + D +AK + EA K+ +E
Sbjct: 406 KGCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDE 441
>gi|147798868|emb|CAN74832.1| hypothetical protein VITISV_004334 [Vitis vinifera]
Length = 742
Score = 43.1 bits (100), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 6/134 (4%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G DMA + + +K LG+NP +YG + C G+ +KA V M E G P
Sbjct: 45 GKIDMAVAIYRHLKRLGLNPIDYTYGLFIKALCRKGNFEKAIDVFREMEEVGANPTAVMC 104
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSK------EAARLGKKK 514
+ + D Y L LR + + V+ + F S+ E + ++
Sbjct: 105 STYIERFCSHKRSDLDYEALRALRAAKWPIDTFAYAVVIRGFCSEIKLKGAEVVFINMRR 164
Query: 515 WNESLIKDTMENKG 528
+I TM G
Sbjct: 165 ITPDVITYTMMING 178
>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
Length = 1274
Score = 43.1 bits (100), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468
++ M GI+P R Y ++ C GD+ A V+E M+ H + P A++R
Sbjct: 881 VLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALA 940
Query: 469 EAGKGDRVYYLLHKLRTSVRKVSPSTA 495
+ GK D LL + K+ P+ A
Sbjct: 941 KCGKADEATLLLRFMLK--MKLVPTIA 965
>gi|359482557|ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
[Vitis vinifera]
Length = 990
Score = 43.1 bits (100), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 6/177 (3%)
Query: 343 RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD 402
R++ + +D A + L AK + + +++ M +E + T + RM +G
Sbjct: 69 RRRGYKLD-IFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGK 127
Query: 403 GDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462
D + + + M G P L +Y + NN VDK + M+E+ P
Sbjct: 128 ADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSV 187
Query: 463 LLRVSV---EAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWN 516
+L V V + G+ D V + +K + + ++K ++ EA RL W+
Sbjct: 188 ILNVLVAEGQLGRLDEVVEVSNKFMN--KSIYAYLVRTLSKLGHASEAHRLFCNMWS 242
>gi|71027557|ref|XP_763422.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350375|gb|EAN31139.1| hypothetical protein TP03_0402 [Theileria parva]
Length = 596
Score = 43.1 bits (100), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
+ I+ M D V N + +V +G+ + A +++ M S GI P L ++
Sbjct: 256 LDKAMRIFRLMQQDGVQPNTVTYNSVIDACARVGEMNSATRLLEEMLSSGIEPDLITFST 315
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
+ +C D+DK+ + M E G+ P+ +LL V++G + +L KL + +
Sbjct: 316 IIKGYCVQSDMDKSFQLLSVMYERGIMPDVILYNSLLEGCVKSG----LLWLCEKLWSQM 371
Query: 488 RK--VSPS--TADVIAKWF 502
++ + PS T ++ K +
Sbjct: 372 QEYNIPPSNFTLTILIKMY 390
>gi|387219047|gb|AFJ69232.1| hypothetical protein NGATSA_2004410 [Nannochloropsis gaditana
CCMP526]
gi|422293010|gb|EKU20311.1| hypothetical protein NGA_2004410 [Nannochloropsis gaditana CCMP526]
gi|422293947|gb|EKU21247.1| hypothetical protein NGA_2004420 [Nannochloropsis gaditana CCMP526]
Length = 1057
Score = 43.1 bits (100), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/139 (20%), Positives = 58/139 (41%), Gaps = 5/139 (3%)
Query: 347 WSIDNQDADEIRLSEDAKKYAFQRG-----FEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401
W ++ D + +++ A + Q G + + M + ++ S G
Sbjct: 716 WLLEGMDRPDQKVTNLAMRACAQAGRWEEAVGLLQNMTSKGIAPDQWSYNTAIHACAQAG 775
Query: 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461
+ + A ++K M G+ P + SY A+ + GDV+ + + E M++ GV+P
Sbjct: 776 NAEKALKLLKEMGQEGVVPDVVSYTTAMDACASVGDVETSLRLLEEMVKKGVHPNHRSFN 835
Query: 462 ALLRVSVEAGKGDRVYYLL 480
A++ AG+ +L
Sbjct: 836 AIMSAHGNAGQATEAIAVL 854
Score = 41.2 bits (95), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
++ ++ ++M + V + S T S+GD + + +++ M G++P RS+
Sbjct: 778 EKALKLLKEMGQEGVVPDVVSYTTAMDACASVGDVETSLRLLEEMVKKGVHPNHRSFNAI 837
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPE 456
+S N G +A +V M EHG+ P+
Sbjct: 838 MSAHGNAGQATEAIAVLGLMTEHGLTPD 865
>gi|255552436|ref|XP_002517262.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543633|gb|EEF45162.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 321
Score = 43.1 bits (100), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 4/131 (3%)
Query: 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431
FE +E+M N + V + +G D ++K MKS P SY AL+
Sbjct: 96 FETFEQMGRFGFEPNTFAHNVVMDVLFKIGQVDTGIKILKEMKS----PNFLSYNIALTN 151
Query: 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS 491
C D+ K ML G YP E +L + G+ LL + T +S
Sbjct: 152 LCKLNDLVKVKKALRIMLSKGYYPNVETFEMVLNCCCKLGRLVEACQLLAMMITVGISLS 211
Query: 492 PSTADVIAKWF 502
S ++ W
Sbjct: 212 VSAWSILIDWL 222
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 43.1 bits (100), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 4/152 (2%)
Query: 327 LLDGRSNLERGPDDQS----RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE 382
++DG R P+ + KK ++ N+ + ++ K + R + + ++M
Sbjct: 132 MIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESG 191
Query: 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442
+ N + + V D A+ + ++M G P L +Y LS C NG +D+A
Sbjct: 192 LAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAY 251
Query: 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474
+ + M E G+ P++ + L+ + GK D
Sbjct: 252 ELLDEMRERGLQPDKFSYDTLMAGLCKTGKID 283
Score = 42.7 bits (99), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A+ ++K MK G+ P + +Y + FC VD A + M+E+G P LL
Sbjct: 180 AYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLS 239
Query: 466 VSVEAGKGDRVYYLLHKLR 484
G D Y LL ++R
Sbjct: 240 GLCRNGLMDEAYELLDEMR 258
>gi|108862483|gb|ABA97464.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 675
Score = 43.1 bits (100), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEH 447
A L A R A + A D+ KRM G+ P + SYG LS D+A V EH
Sbjct: 432 AVLLACSRAA----ETSAAVDIFKRMIDQGLTPDVVSYGALLSALEKGKLYDEALRVWEH 487
Query: 448 MLEHGVYPEEPELEAL-LRVSVEAGKGD 474
M + GV +P L A + VS+ GKG+
Sbjct: 488 MCKVGV---KPNLHAYTILVSIYIGKGN 512
>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 933
Score = 43.1 bits (100), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 8/173 (4%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
+ ++M +PM+ + G D A ++ MK G++P + +Y P +
Sbjct: 188 ALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIV 247
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL---LHKLRTSV 487
+C V++A + E M+ +GV + L AL+ G+ Y L + K+ +
Sbjct: 248 YYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAP 307
Query: 488 RKVSPST-ADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539
V+ T D +AK KE L + + ++ D + + WLGK
Sbjct: 308 NHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTA----LMDWLGK 356
>gi|357146187|ref|XP_003573904.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71210-like isoform 1 [Brachypodium distachyon]
gi|357146190|ref|XP_003573905.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71210-like isoform 2 [Brachypodium distachyon]
Length = 905
Score = 43.1 bits (100), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 71/163 (43%), Gaps = 4/163 (2%)
Query: 340 DQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS 399
D+ + + D Q D++ + +K+ +++ +M + + ++++A
Sbjct: 335 DKKEAEGYIPDGQRYDKL-VYRLLRKHRLGEVYDLLVEMMEEGIAPGRSTMSAALCFFCK 393
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
G ++A + + LGINP Y + C +G + AC V E + G +P
Sbjct: 394 AGLVEVAMHLYRSRTDLGINPNKDVYNNLIRALCRSGATEDACLVLEQSMADGYFPGRQT 453
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWF 502
V + GK D+V LL + ++++ + +V+AK+
Sbjct: 454 FSMFANVLCQEGKLDKVRELLDR---ALKQEAWPMDNVLAKYL 493
>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 772
Score = 43.1 bits (100), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
Query: 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457
M + D +AF M + M + G P + +Y + C G+ ++AC + E+M+ G+ P+
Sbjct: 471 MKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDH 530
Query: 458 PELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKEAARLGKKKW 515
+++ V+ G + + +++ + + V+PS T V+ +K+ L +
Sbjct: 531 VTYTSIINGFVKNGHLRKAREVFNEMLS--KGVAPSVVTYTVLIHAHAAKQMLDLAFMYF 588
Query: 516 NESLIKDTMEN 526
++ L K N
Sbjct: 589 SKMLEKSVPAN 599
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
M+ GI P + +Y L +C G VD+A + M E G YP + L+ + G+
Sbjct: 206 MEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGE 265
Query: 473 GDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSK 505
++ L+ ++ S VS T + + F K
Sbjct: 266 LEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQK 298
>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
Length = 524
Score = 43.1 bits (100), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
+R +EI +M +P ++ + + R +G D A ++ M GI P L SY
Sbjct: 375 MERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNT 434
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474
+S + GD+ A V + M++ G P AL++ + +GD
Sbjct: 435 LISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGD 481
>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 701
Score = 43.1 bits (100), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457
GD D+A MK G P +YG +S C VD+AC + E M++ G+ P E
Sbjct: 547 GDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPE 603
>gi|147819559|emb|CAN76564.1| hypothetical protein VITISV_029137 [Vitis vinifera]
Length = 449
Score = 43.1 bits (100), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 14/119 (11%)
Query: 414 KSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK- 472
++LGI P + SY ++ FC G +D A SV + M + G+ P+ LL V ++G
Sbjct: 268 RNLGIVPDVVSYNILVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNVFYQSGSN 327
Query: 473 --GDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESL-IKDTMENKG 528
G++++ L+ K V+P+ + +N+K + + + +E++ + D M+ G
Sbjct: 328 ADGEKIWDLMKK-----NNVAPNV-----RSYNAKLRGVISENRMSEAVNLIDEMKTSG 376
>gi|115488188|ref|NP_001066581.1| Os12g0283900 [Oryza sativa Japonica Group]
gi|113649088|dbj|BAF29600.1| Os12g0283900 [Oryza sativa Japonica Group]
Length = 675
Score = 43.1 bits (100), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEH 447
A L A R A + A D+ KRM G+ P + SYG LS D+A V EH
Sbjct: 432 AVLLACSRAA----ETSAAVDIFKRMIDQGLTPDVVSYGALLSALEKGKLYDEALRVWEH 487
Query: 448 MLEHGVYPEEPELEAL-LRVSVEAGKGD 474
M + GV +P L A + VS+ GKG+
Sbjct: 488 MCKVGV---KPNLHAYTILVSIYIGKGN 512
>gi|125579030|gb|EAZ20176.1| hypothetical protein OsJ_35776 [Oryza sativa Japonica Group]
Length = 642
Score = 43.1 bits (100), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEH 447
A L A R A + A D+ KRM G+ P + SYG LS D+A V EH
Sbjct: 399 AVLLACSRAA----ETSAAVDIFKRMIDQGLTPDVVSYGALLSALEKGKLYDEALRVWEH 454
Query: 448 MLEHGVYPEEPELEAL-LRVSVEAGKGD 474
M + GV +P L A + VS+ GKG+
Sbjct: 455 MCKVGV---KPNLHAYTILVSIYIGKGN 479
>gi|358346655|ref|XP_003637381.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503316|gb|AES84519.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1023
Score = 43.1 bits (100), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 6/128 (4%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + A D++ MKS GI P +Y + C G V+KA S + ML P
Sbjct: 684 GKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPITH 743
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLI 520
+ L++ + K D++ + KL S ++S + + + F RLG + ++
Sbjct: 744 KFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVF-----CRLGMTR-KAKVV 797
Query: 521 KDTMENKG 528
D M +G
Sbjct: 798 LDEMVKRG 805
>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 507
Score = 43.1 bits (100), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Query: 400 MGDG---DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456
+G+G D AF+ ++ K+ G P +Y +S +C + +D A + M E G+ P
Sbjct: 305 LGNGSRMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRIDDAYRIVGEMKELGIGPN 364
Query: 457 EPELEALLRVSVEAGKGDRVYYLLHKLRTSVR-KVSPSTADVIAKWFNSKEAARLGKKKW 515
+ +L ++ G+ Y + ++ + + S ST ++ + F ++ + W
Sbjct: 365 ARTYDIILVHLIKGGRTKEAYSVFQRMSSETGCEPSVSTYAIMVRMFCNENQLDMAMVVW 424
Query: 516 NESLIKDTMENKG 528
NE M++KG
Sbjct: 425 NE------MKDKG 431
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%)
Query: 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454
RM + DMA + MK GI P + + + C+ +D AC + ML+ G+
Sbjct: 409 RMFCNENQLDMAMVVWNEMKDKGILPGIHMFSTLIISLCHENKLDDACRYFQQMLDVGIR 468
Query: 455 PEEPELEALLRVSVEAGKGDRVYYLLHKL 483
P A R + AG + V + K+
Sbjct: 469 PTANMFSAFKRALMAAGMENTVIHFAKKV 497
>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
Length = 933
Score = 43.1 bits (100), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 8/173 (4%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
+ ++M +PM+ + G D A ++ MK G++P + +Y P +
Sbjct: 188 ALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIV 247
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL---LHKLRTSV 487
+C V++A + E M+ +GV + L AL+ G+ Y L + K+ +
Sbjct: 248 YYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAP 307
Query: 488 RKVSPST-ADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539
V+ T D +AK KE L + + ++ D + + WLGK
Sbjct: 308 NHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTA----LMDWLGK 356
>gi|255573471|ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532966|gb|EEF34732.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 766
Score = 43.1 bits (100), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%)
Query: 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443
P+N AV G+ AF++++ M+S GI+P SY + C G V+KA
Sbjct: 320 PLNSYCYNAVIHEFCRNGELHEAFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKALD 379
Query: 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+ E M++ V P +L ++G + + H L
Sbjct: 380 LIEEMVQSNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNL 419
>gi|356557251|ref|XP_003546931.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Glycine max]
Length = 808
Score = 43.1 bits (100), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
N+ S T + GD A M+ R+ +G P L SYG + +G++D A V
Sbjct: 375 NKFSYTPLMHAYCKQGDYVKAAGMLFRIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMVR 434
Query: 446 EHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492
E M+E GV+P+ L+ + G+ + LL ++ R V P
Sbjct: 435 EKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLD--RNVQP 479
>gi|255574125|ref|XP_002527978.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532604|gb|EEF34390.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 621
Score = 43.1 bits (100), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
GD AF + +M S G+ P + +Y + G++ A S+++ ML HG++P+
Sbjct: 421 GDSANAFSIRDQMLSFGVVPNVFTYNALIHAQVKTGNIVDAYSLKKMMLCHGLFPDVITY 480
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWF----NSKEAARLGKKKWN 516
L+ + AG+ L +++ S + T + + N KEA L K N
Sbjct: 481 NLLIGTACNAGRISIAVQLYYEMLRSGHEPDIITYTELIRGLCMRGNMKEAKELFAKLQN 540
Query: 517 ESLIKD 522
L D
Sbjct: 541 TGLTVD 546
>gi|449468059|ref|XP_004151739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 225
Score = 43.1 bits (100), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + A+++ +++ G+ + +Y + FC G VDKA + E M E+G P+
Sbjct: 100 GKLETAWELFEKLYQEGLQSDVVTYNIMIHGFCKVGQVDKANILFEKMEENGCTPDIITY 159
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492
LL ++ K D V LLHK+ R +SP
Sbjct: 160 NTLLCGFCQSNKSDEVVKLLHKMIQ--RDMSP 189
>gi|428179975|gb|EKX48844.1| hypothetical protein GUITHDRAFT_68401 [Guillardia theta CCMP2712]
Length = 396
Score = 43.1 bits (100), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A +++M+ GI P + +Y + F + G+V +A + E M G++P+ AL
Sbjct: 204 DQAQKTLEQMEEAGIQPSVVTYTLLIHEFSSAGNVAQAQAAFETMERSGIFPDTGAYNAL 263
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWN 516
L G+ R+ + KL S K S T ++ K +A+ KK N
Sbjct: 264 LDGYASLGQTARMKEIFWKLMQSANKPSIETYSIMIKCLLHSDASDDAKKSEN 316
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 47/102 (46%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A+ + RMKS GI P + +Y + +C GD++ A +++ M+ G+ P L
Sbjct: 28 DQAYSYLTRMKSDGIMPNVWAYTTCIDAYCKVGDMEMAENIKSMMISSGIEPTLATFTTL 87
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSK 505
++ + G + + + L ++ + ++ F +K
Sbjct: 88 MKGYAKYGNHEALEHYLEIMQQENIMIDSYIVSILIDSFVNK 129
>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 913
Score = 42.7 bits (99), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
F F I+E+M + + A + MG+ D A ++++M+ + P R++ P
Sbjct: 503 FTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRP 562
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
+ F GD+ +A + + M G P AL+ + + +R +L+K+ S+
Sbjct: 563 IIEGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKM--SI 620
Query: 488 RKVSPS 493
++P+
Sbjct: 621 AGITPN 626
>gi|449016900|dbj|BAM80302.1| similar to Nedd4 binding protein 1 [Cyanidioschyzon merolae strain
10D]
Length = 325
Score = 42.7 bits (99), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 33/151 (21%)
Query: 608 VVDAANVGLYSQRN--FKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRA 665
V+D N+ +N F P + V+ R++ R D RA
Sbjct: 192 VLDGENIAWAHGQNAVFSPKGIAIAVDFFRKR------------GYRCVVFLPDYRRKRA 239
Query: 666 LIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFP----- 720
+ +DAL P G DD + L A+ +LVTND ++DH Q F+P
Sbjct: 240 DLPTVSASDALVFVPAGEYDDTFALGYAVGHDAILVTNDLLQDHLDQ-----FYPDEGEA 294
Query: 721 -----RWKERHQVRFSFSD----AGPEFYMP 742
+W H+ F+F P F++P
Sbjct: 295 REALRKWLGSHRCSFTFVGDEFLPNPHFFLP 325
>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1136
Score = 42.7 bits (99), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468
++ M GI+P R Y ++ C GD+ A V+E M+ H + P A++R
Sbjct: 921 VLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALA 980
Query: 469 EAGKGDRVYYLLHKLRTSVRKVSPSTA 495
+ GK D LL + K+ P+ A
Sbjct: 981 KCGKADEATLLLRFMLK--MKLVPTIA 1005
>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
Length = 969
Score = 42.7 bits (99), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
++YE+M +N+ + R MG D AF ++K M G P +Y ++
Sbjct: 406 KVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFL 465
Query: 433 CNNGDVDKACSVEEHMLEHGVYPE 456
C V+KA + + M GV P+
Sbjct: 466 CEAMKVEKAFLLFQEMKSVGVIPD 489
>gi|302782654|ref|XP_002973100.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
gi|300158853|gb|EFJ25474.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
Length = 674
Score = 42.7 bits (99), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 57/120 (47%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
A+ + FE+YE + + + A ++ + + G + A D++K MK G NP +Y
Sbjct: 333 AYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYR 392
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
A++ + G VD A + + ++ P+ P ++R AG+ ++ + ++ S
Sbjct: 393 TAMNTYATKGMVDPARRMFDKVVALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEMMES 452
Score = 39.3 bits (90), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/135 (19%), Positives = 63/135 (46%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ + +E+M + + +E + +V M +G + A ++ +++KS+ +YG
Sbjct: 195 EEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAI 254
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
+V+ GD + + M + G P + L+ +AGK ++ + +++RTS
Sbjct: 255 ANVYARAGDYQSIIQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGV 314
Query: 489 KVSPSTADVIAKWFN 503
+P T ++ + +
Sbjct: 315 SPTPVTLSILVEMYT 329
>gi|313851107|ref|NP_001186539.1| pentatricopeptide repeat protein [Zea mays]
gi|312064725|gb|ADQ27447.1| pentatricopeptide repeat protein [Zea mays]
gi|414872960|tpg|DAA51517.1| TPA: hypothetical protein ZEAMMB73_325693 [Zea mays]
Length = 489
Score = 42.7 bits (99), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 44/82 (53%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
+MA + K M+ P + ++ ++ C+ G+V +AC + E M+E G+ P L
Sbjct: 400 EMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKL 459
Query: 464 LRVSVEAGKGDRVYYLLHKLRT 485
++ ++ G+ D + +L+ K++
Sbjct: 460 RQLLLKEGRKDVLDFLVEKMKI 481
Score = 40.0 bits (92), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
M+ GI P + Y ++ FC + A V + M HG+ P +L + GK
Sbjct: 305 MEKDGIMPDVVVYNALITAFCKVKKFENAFRVMDDMQGHGISPNSRTWNIILNTLISLGK 364
Query: 473 GDRVYYLLHKLRTSVRKVSP--STADVIAKWFNSKEAARLGKKKW 515
D Y + R+ +++ P T ++ K F + + K W
Sbjct: 365 DDEAYRV---FRSMIKRCKPDSDTYTMMIKMFCENDKIEMALKVW 406
>gi|297853022|ref|XP_002894392.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297340234|gb|EFH70651.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 525
Score = 42.7 bits (99), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
E+ E C+ ++ A L A+ + GD D A+ M + M +LG+ P S+ + +
Sbjct: 233 EMLENNCVVDLLAYNALLDALCKS----GDVDGAYKMFQEMGNLGLKPDAYSFAIFIHSY 288
Query: 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
C+ DV A V + M + + P +++ + K D Y LL ++
Sbjct: 289 CDASDVHSAYQVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEM 339
>gi|359474892|ref|XP_002276432.2| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
chloroplastic-like [Vitis vinifera]
Length = 1115
Score = 42.7 bits (99), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
A R F++ +M + P++ +T A+ + + G D A ++ K + I
Sbjct: 612 AVDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGQVDRAREVYKMIDQYNIKGTPEV 671
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y A+S GD + A SV M GV P+E L AL+ V+ AGK D + ++ + R
Sbjct: 672 YTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEMFLSALIDVAGHAGKLDAAFEVIQEAR 731
>gi|302789998|ref|XP_002976767.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
gi|300155805|gb|EFJ22436.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
Length = 669
Score = 42.7 bits (99), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 57/120 (47%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
A+ + FE+YE + + + A ++ + + G + A D++K MK G NP +Y
Sbjct: 333 AYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYR 392
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
A++ + G VD A + + ++ P+ P ++R AG+ ++ + ++ S
Sbjct: 393 TAMNTYATKGMVDPARRMFDKVVALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEMMES 452
>gi|449461469|ref|XP_004148464.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g01390-like [Cucumis sativus]
Length = 1058
Score = 42.7 bits (99), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 54/111 (48%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433
++++M + ++ + T++ + GD D A + K MK+ G +P + SY + +
Sbjct: 204 VFQQMKEKGIKIDAVTYTSLMHWRSNSGDVDGAIKLWKEMKANGCHPTVVSYTAYIKILL 263
Query: 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
+NG +++A + + ML+ G+ P L+ + GK + K++
Sbjct: 264 DNGQINEATATYKKMLQSGLSPNCCIYTILMEYLIGEGKCKEALDIFSKMQ 314
>gi|428186270|gb|EKX55120.1| hypothetical protein GUITHDRAFT_53115, partial [Guillardia theta
CCMP2712]
Length = 363
Score = 42.7 bits (99), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 51/115 (44%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
+ FE++E+M + N + TA +GD A +++ M + GI P L++Y A+
Sbjct: 116 KAFEVFERMQARGIVGNVYTFTAAISSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAAI 175
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
S + A + E M + P+ A++ +AG + + K++
Sbjct: 176 SACEKAAEARPALGLLERMTNEKIKPDIIVYSAVMAACGKAGLWEPAARIFQKMK 230
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 5/140 (3%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
+S AK +QR +Y +M + NE + A+ G AF++ +RM++ GI
Sbjct: 70 ISACAKGGEWQRAMNMYHEMEAQGIEPNEFTFAALITACEKGGQVSKAFEVFERMQARGI 129
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478
+ ++ A+S GD +A + E M+ G+ P A + +A +
Sbjct: 130 VGNVYTFTAAISSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAAISACEKAAEARPALG 189
Query: 479 LLHKLRTSVRKVSPSTADVI 498
LL R + K+ P D+I
Sbjct: 190 LLE--RMTNEKIKP---DII 204
>gi|224070746|ref|XP_002303222.1| predicted protein [Populus trichocarpa]
gi|222840654|gb|EEE78201.1| predicted protein [Populus trichocarpa]
Length = 472
Score = 42.7 bits (99), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
M + D A + M G+ P L Y + + CNN DVD A + + M+ +G +P
Sbjct: 275 MLVKQNDSTHAIPLWDIMVGSGLLPNLIMYNAMIGLHCNNNDVDNAFRLLDEMVFNGAFP 334
Query: 456 EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST 494
+ + R ++ K RV +++ ++ SP T
Sbjct: 335 DFLTFNIIFRCLIKNKKVHRVGKFFYEM---IKNESPPT 370
>gi|225464799|ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71210-like [Vitis vinifera]
Length = 881
Score = 42.7 bits (99), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 381 DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440
D+V MN AV G D+A ++ G++P +Y ++ C +G D+
Sbjct: 387 DKVTMN-----AVLCFFCKAGMVDVALELYNSRAEFGLSPNSMAYNYLINTLCGDGSTDE 441
Query: 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495
A V +H LE G +P + L + GK D++ L+ L R + PS +
Sbjct: 442 AYHVLKHSLEQGYFPGKKTFSILADALCQEGKLDKMKELV--LVALDRNIMPSAS 494
>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
Length = 1096
Score = 42.7 bits (99), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468
++ M GI+P R Y ++ C GD+ A V+E M+ H + P A++R
Sbjct: 881 VLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALA 940
Query: 469 EAGKGDRVYYLLHKLRTSVRKVSPSTA 495
+ GK D LL + K+ P+ A
Sbjct: 941 KCGKADEATLLLRFMLK--MKLVPTIA 965
>gi|125536310|gb|EAY82798.1| hypothetical protein OsI_38004 [Oryza sativa Indica Group]
Length = 669
Score = 42.7 bits (99), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEH 447
A L A R A + A D+ KRM G+ P + SYG LS D+A V EH
Sbjct: 426 AVLLACSRAA----ETSAAVDIFKRMIDQGLTPDVVSYGALLSALEKGKLYDEALRVWEH 481
Query: 448 MLEHGVYPEEPELEAL-LRVSVEAGKGD 474
M + GV +P L A + VS+ GKG+
Sbjct: 482 MCKVGV---KPNLHAYTILVSIYIGKGN 506
>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 717
Score = 42.7 bits (99), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%)
Query: 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457
M + D +AF M + M + G P + +Y + C G+ ++AC + E+M+ G+ P+
Sbjct: 471 MKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDH 530
Query: 458 PELEALLRVSVEAG 471
+++ V+ G
Sbjct: 531 VTYTSIINGFVKNG 544
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
M+ GI P + +Y L +C G VD+A + M E G YP + L+ + G+
Sbjct: 206 MEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGE 265
Query: 473 GDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSK 505
++ L+ ++ S VS T + + F K
Sbjct: 266 LEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQK 298
>gi|356523566|ref|XP_003530408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g47360-like [Glycine max]
Length = 475
Score = 42.7 bits (99), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
Query: 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452
V R+ GD + A + M S G+ P L +Y + F N G ++A SV + M HG
Sbjct: 168 VIRLCCKKGDIETALKLTSEMSSNGLCPDLITYMAIVEGFSNAGRSEEAYSVLKVMRLHG 227
Query: 453 VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGK 512
P L A+L +G +R LL ++ K T +V+ + S + +
Sbjct: 228 CSPNLVILSAILDGFCRSGSMERALELLDEM----EKGGVCTPNVVT--YTSVIQSFCKR 281
Query: 513 KKWNESL-IKDTMENKGGGWHG 533
+W E+L I D M K G H
Sbjct: 282 GQWKEALDILDRM--KAFGCHA 301
>gi|225452238|ref|XP_002268821.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46610
[Vitis vinifera]
Length = 763
Score = 42.7 bits (99), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 3/152 (1%)
Query: 334 LERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAV 393
L++GP + + + + + I L+ KK ++ G + KM + AV
Sbjct: 469 LDKGPKPNNLSYELVVSHFN---ILLTAARKKGIWRWGVRLLNKMEDKGLKPGSREWNAV 525
Query: 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453
+ A ++ +RM G P + SYG LS D+A V EHM++ GV
Sbjct: 526 LVACSKAAETSAAVEIFRRMVEQGEKPTIISYGALLSALEKGKLYDEASRVWEHMVKMGV 585
Query: 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485
P + + V GK RV +L ++ T
Sbjct: 586 EPNLYAYTIMASICVGQGKLQRVDSILREMET 617
>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
Length = 899
Score = 42.7 bits (99), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++ +M+ GI P + +Y + C + D A + E M ++G+ P+E L
Sbjct: 423 AMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTH 482
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVS-PSTADVIAKWFNSKEAARLGKKKWNESLIKDT 523
++G+ + Y L + + KV+ S D +K N+ AA L +K NE D+
Sbjct: 483 ALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADS 541
>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
Length = 897
Score = 42.7 bits (99), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
R FEI +M + ++ + + R +G D A ++ M GI P L +Y
Sbjct: 742 IDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNT 801
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474
+S + GDV A + M+ G P AL++ + G+GD
Sbjct: 802 LISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGD 848
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 399 SMGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-VYPE 456
S G A D+++ M+ G I P +YG +S +C G VD+A V + ML G V PE
Sbjct: 526 SRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPE 585
Query: 457 EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495
AL+ + GK D LL++ R R V+ + A
Sbjct: 586 AVMYNALIGGYCDQGKLDTA--LLYRDRMVERGVAMTVA 622
>gi|242038885|ref|XP_002466837.1| hypothetical protein SORBIDRAFT_01g014995 [Sorghum bicolor]
gi|241920691|gb|EER93835.1| hypothetical protein SORBIDRAFT_01g014995 [Sorghum bicolor]
Length = 1014
Score = 42.7 bits (99), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Query: 379 CLDEVP--MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436
CL ++P ++E + A+ G D A D+ ++M P + +Y LS FC G
Sbjct: 508 CLLDIPSAIDEKTFNALLLGICKYGTLDEALDLCEKMVKNNCLPDIHTYTILLSGFCRKG 567
Query: 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+ A + + ML+ GV P+ LL + G+ Y+ ++
Sbjct: 568 KILPALIMLQMMLDKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEI 614
>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
Length = 973
Score = 42.7 bits (99), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457
M GD + AF + M + GI L + L+ C G ++KA + + M+E GV P+
Sbjct: 322 MRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDS 381
Query: 458 PELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKEAARLGKKKW 515
L+ R + LL +++ RK++P+ T VI R G +
Sbjct: 382 QTYSLLIEGHCRGQNMARAFELLDEMKK--RKLAPTVLTYSVIINGL-----CRCGNLQG 434
Query: 516 NESLIKDTMEN 526
+++++ + N
Sbjct: 435 TNAILREMVMN 445
>gi|225436259|ref|XP_002275952.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
mitochondrial-like [Vitis vinifera]
Length = 566
Score = 42.7 bits (99), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 47/109 (43%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+ G+ F ++++MK G +P +Y + FC +D + M E+GV P+
Sbjct: 405 LKSGEEVFMLLEKMKETGCHPDKDTYIMLIRRFCRWRQLDNVFKLWSEMSENGVGPDRSS 464
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAA 508
L+ GK + Y +++ P T D++ W + KE A
Sbjct: 465 YIVLIHGLFLNGKLEEAYKYYIEMKEKQFLPEPKTEDMLQAWISGKETA 513
>gi|449507432|ref|XP_004163031.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
mitochondrial-like [Cucumis sativus]
Length = 1061
Score = 42.7 bits (99), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
AF + ++ LG+ P +YG + C G ++ A + E M+ G+ P +L+
Sbjct: 765 AFQLFDSLERLGLIPTEITYGTLIDSLCREGYLEDARQLFERMIPKGLKPNTHIYNSLID 824
Query: 466 VSVEAGKGDRVYYLLHKLRT 485
+ G+ + + LLH+LRT
Sbjct: 825 GYIRIGQIEEAFKLLHELRT 844
Score = 42.4 bits (98), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G+ + AF +++RM+ G+ +Y + FC G +++A S+ E + + +E
Sbjct: 305 LGNVEKAFGVLERMRKSGLELSSVTYTVIMLGFCKKGKLEEAFSLFEMVKGLEMEVDEFM 364
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVI----AKWFNSKEAARLGKKKW 515
L+ G DRV+ LL ++ T K S T + + KW + EA RL K
Sbjct: 365 YATLIDGCCRKGDFDRVFGLLDEMETRGMKSSIVTYNTVINGLCKWGRTSEADRLSKGLH 424
Query: 516 NESLIKDTM 524
+ + T+
Sbjct: 425 GDVITYSTL 433
>gi|218192576|gb|EEC75003.1| hypothetical protein OsI_11066 [Oryza sativa Indica Group]
Length = 668
Score = 42.7 bits (99), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%)
Query: 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
+A D+ + M+S G+ L ++ ++ + N+G VD+A + E M G P P +L
Sbjct: 372 LASDIKQDMQSAGVRLNLVTWSSLINAYANSGLVDRAIEILEEMTRDGCQPTAPCFNIIL 431
Query: 465 RVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493
V++ + DR + L + + K+S S
Sbjct: 432 TGCVKSCQYDRAFRLFYDWKEYGVKISLS 460
>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 42.7 bits (99), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + A+++ +++ + G P + +Y + FC G VDKA + + M +G P+
Sbjct: 474 GKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITY 533
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKE 506
L+R E+ K + V LLH R + + VSP T ++ + E
Sbjct: 534 NTLMRGFYESNKLEEVVQLLH--RMAQKDVSPDAITCSIVVDMLSKDE 579
>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 1011
Score = 42.7 bits (99), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457
M GD + AF + M + GI L + L+ C G ++KA + + M+E GV P+
Sbjct: 331 MRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDS 390
Query: 458 PELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKEAARLGKKKW 515
L+ R + LL +++ RK++P+ T VI R G +
Sbjct: 391 QTYSLLIEGHCRGQNMARAFELLDEMKK--RKLAPTVLTYSVIINGL-----CRCGNLQG 443
Query: 516 NESLIKDTMEN 526
+++++ + N
Sbjct: 444 TNAILREMVMN 454
Score = 39.3 bits (90), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468
+ + M + GI P +Y + +C G+V +AC +++ +L G+ +AL++
Sbjct: 866 LFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALC 925
Query: 469 EAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWF----NSKEAARL 510
+ + V LL+++ S ++ T VIA+ F N EAA +
Sbjct: 926 KKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEV 971
>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1016
Score = 42.7 bits (99), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 6/144 (4%)
Query: 380 LDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439
L+ +P N + TA+ +GD + +++ M+ INP + +Y ++ + G +D
Sbjct: 372 LNLIP-NSITYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILD 430
Query: 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIA 499
+A +V + ML+ + P L+ +AGK + L ++++ S KV+ DV+
Sbjct: 431 EAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLV 490
Query: 500 KWFNSKEAARLGKKKWNESLIKDT 523
N K R+ + E L+KD
Sbjct: 491 N--NLKRGKRMDEA---EELLKDV 509
>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
Length = 987
Score = 42.7 bits (99), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
+M + +++RM G+NP + +Y ++ FC +++AC + +HML + P E L
Sbjct: 803 NMVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTML 862
Query: 464 LRVSVE 469
++ +
Sbjct: 863 IKCCCD 868
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++ +M+ GI P + +Y + C + D A + E M ++G+ P+E L
Sbjct: 512 AMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTD 571
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVS-PSTADVIAKWFNSKEAARLGKKKWNESLIKD 522
++G+ + Y L + + KV+ S D +K N+ AA L +K NE D
Sbjct: 572 ALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKAD 629
>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 42.7 bits (99), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 65/322 (20%), Positives = 127/322 (39%), Gaps = 23/322 (7%)
Query: 198 LDMCSKRG-DVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTL 256
+D C K G D+ A+ ++D+ Q+EG++ + +N L+ +CS + R
Sbjct: 277 IDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRG 336
Query: 257 DTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF 316
++ T N+ L D+ + GQ++ +S M N S + + LG F
Sbjct: 337 IEQDIFTFNT--LIDA--VCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCF 392
Query: 317 SNG-----HMKLN---------SQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSED 362
MK + + L+D + L R D KD AD + +
Sbjct: 393 EEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNAL 452
Query: 363 AKKYAFQRGFE----IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
Y Q ++ +++KM + + N + +A+ G ++ K G+
Sbjct: 453 IDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGL 512
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478
P + Y + C G V+ A + + M + G+ P +L+ G+ D++
Sbjct: 513 KPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRYGQADKLEA 572
Query: 479 LLHKLRTSVRKVSPSTADVIAK 500
+ + SV+K+ + +V+ K
Sbjct: 573 VKANMPNSVQKIGERSMEVVRK 594
>gi|449461209|ref|XP_004148334.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
mitochondrial-like [Cucumis sativus]
Length = 1085
Score = 42.7 bits (99), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
AF + ++ LG+ P +YG + C G ++ A + E M+ G+ P +L+
Sbjct: 789 AFQLFDSLERLGLIPTEITYGTLIDSLCREGYLEDARQLFERMIPKGLKPNTHIYNSLID 848
Query: 466 VSVEAGKGDRVYYLLHKLRT 485
+ G+ + + LLH+LRT
Sbjct: 849 GYIRIGQIEEAFKLLHELRT 868
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G+ + AF +++RM+ G+ +Y + FC G +++A S+ E + + +E
Sbjct: 305 LGNVEKAFGVLERMRKSGLELSSVTYTVIMLGFCKKGKLEEAFSLFEMVKGLEMEVDEFM 364
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVI----AKWFNSKEAARLGKKKW 515
L+ G DRV+ LL ++ T K S T + + KW + EA RL K
Sbjct: 365 YATLIDGCCRKGDFDRVFGLLDEMETRGMKSSIVTYNTVINGLCKWGRTSEADRLSKGLH 424
Query: 516 NESLIKDTM 524
+ + T+
Sbjct: 425 GDVITYSTL 433
>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Glycine max]
Length = 521
Score = 42.4 bits (98), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
++G+E++E+MC + + + + + G + ++ M + + P Y
Sbjct: 346 RKGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAV 405
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
+ C NG VD A SV M+E+GV P+ ALL
Sbjct: 406 VDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALL 441
>gi|110741791|dbj|BAE98839.1| hypothetical protein [Arabidopsis thaliana]
Length = 1089
Score = 42.4 bits (98), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 68/143 (47%), Gaps = 3/143 (2%)
Query: 367 AFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
A R F++ +M + P++ S+ A+ + + G + A ++ + + GI
Sbjct: 587 AVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEV 646
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y A++ +GD D ACS+ + M E V P+E AL+ V+ A D + +L +
Sbjct: 647 YTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAK 706
Query: 485 T-SVRKVSPSTADVIAKWFNSKE 506
+ +R + S + ++ N+K+
Sbjct: 707 SQGIRLGTISYSSLMGACCNAKD 729
>gi|403363909|gb|EJY81705.1| hypothetical protein OXYTRI_20780 [Oxytricha trifallax]
Length = 747
Score = 42.4 bits (98), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 661 PVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFF- 719
P N +L+ + + TP DD Y + A KF +VTND+ RD+ + + +D
Sbjct: 644 PDNISLLHALSDKGFIIKTPPQDYDDSYCIKYAKKFNAFIVTNDKFRDYITKQVSSDQAR 703
Query: 720 -PRWKERHQVRFSFSDAGPEFYMPPPCSVVIQESEKGNW-HIPI 761
+W + H V ++F+ ++P P S + E ++ H P+
Sbjct: 704 ERKWIKDHSVSYAFNVNE---FLPNPDSKIFNRYEYDDYKHYPL 744
>gi|348674837|gb|EGZ14655.1| hypothetical protein PHYSODRAFT_263881 [Phytophthora sojae]
Length = 1108
Score = 42.4 bits (98), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G A ++ RMK G+ P + Y + G V A +V E M G+ P+
Sbjct: 294 GQAAHAVRVIGRMKERGVLPDVSVYNAVMRACSKAGRVSWAYNVMEKMQVAGLVPDRASF 353
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLI 520
L+ ++ G D+ + H +RT V + + F AR G+ + +L+
Sbjct: 354 TILMNAAIAEGDLDKAFETFHLMRTHVAEPDEIAFSCLINGF-----AREGRVERALNLL 408
Query: 521 KDTME 525
+D +E
Sbjct: 409 EDLLE 413
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
+ + EKM + + + AS T + A++ GD D AF+ M++ P ++ ++
Sbjct: 334 AYNVMEKMQVAGLVPDRASFTILMNAAIAEGDLDKAFETFHLMRTHVAEPDEIAFSCLIN 393
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKL 483
F G V++A ++ E +LE G+ P L+ + A K YY + +L
Sbjct: 394 GFAREGRVERALNLLEDLLECGLTPSLVTFNTLMNACAKSHYYAHKAIDFYYEMQEL 450
>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1043
Score = 42.4 bits (98), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 111/278 (39%), Gaps = 21/278 (7%)
Query: 206 DVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMN 265
+V GA+ ++++ + G YN +L L G A G L F +
Sbjct: 232 NVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKG--GFYHSAVIVFG--KLGQFRIQPDA 287
Query: 266 STELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNS 325
T + +G+LD + P+ + ++S D TF + +G++
Sbjct: 288 QTFRIFVHSFNRSGRLDPAAEPIQEMIKSG----IDPGVHTFTVLID-ALVKSGNIDEAC 342
Query: 326 QLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM 385
+ +G NL P+ + ++ N A RL E + + E+ E C +
Sbjct: 343 KFFNGMKNLRCSPNVVTYT---TLVNGLAKAGRLEEACEVFV-----EMKENNCSPDAIA 394
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
+ +G+ G+ DMA + K MK G+ P LR+Y +SV G +A +
Sbjct: 395 YNTLIDGLGKA----GEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLF 450
Query: 446 EHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+ E G P+ L+ V + G+ D+V ++ ++
Sbjct: 451 HDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEM 488
>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 580
Score = 42.4 bits (98), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + A+++ +++ + G P + +Y + FC G VDKA + + M +G P+
Sbjct: 449 GKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITY 508
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKE 506
L+R E+ K + V LLH R + + VSP T ++ + E
Sbjct: 509 NTLMRGFYESNKLEEVVQLLH--RMAQKDVSPDAITCSIVVDMLSKDE 554
>gi|27476073|gb|AAO17004.1| Hypothetical protein [Oryza sativa Japonica Group]
Length = 572
Score = 42.4 bits (98), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%)
Query: 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
+A D+ + M+S G+ L ++ ++ + N+G VD+A + E M G P P +L
Sbjct: 372 LASDIKQDMQSAGVRLNLVTWSSLINAYANSGLVDRAIEILEEMTRDGCQPTAPCFNIIL 431
Query: 465 RVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493
V++ + DR + L + + K+S S
Sbjct: 432 TGCVKSCQYDRAFRLFYDWKEYGVKISLS 460
>gi|15983487|gb|AAL11611.1|AF424618_1 AT5g04810/MUK11_13 [Arabidopsis thaliana]
Length = 950
Score = 42.4 bits (98), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
+K ++ EI ++M L V NE + T + + S+GD AF+ R+++ G++ +
Sbjct: 633 VEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDI 692
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHM 448
+Y L C +G + A +V + M
Sbjct: 693 FTYEALLKACCKSGRMQSALAVTKEM 718
>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Brachypodium distachyon]
Length = 718
Score = 42.4 bits (98), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G D A +++ M++ G+ P + +Y LS +C GD D A + ML+ GV P+
Sbjct: 378 LGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAIT 437
Query: 460 LEALLR 465
+L+R
Sbjct: 438 YSSLIR 443
Score = 40.0 bits (92), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+GD D AF++ ++M G+ P +Y + C + AC + E ML+ G+ P+E
Sbjct: 413 IGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFT 472
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA------DVIAKWFNSKEAARLGKK 513
L+ + G + L ++ + V P D ++K +KEA RL K
Sbjct: 473 YTTLIDGHCKEGNVQKALSLHDEMIK--KGVLPDVVTYSVLIDGLSKSARTKEAQRLLFK 530
Query: 514 KWNESLIKDTME 525
+ E + D ++
Sbjct: 531 LYYEDPVPDNIK 542
>gi|302141771|emb|CBI18974.3| unnamed protein product [Vitis vinifera]
Length = 324
Score = 42.4 bits (98), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
+MA + K M+ P + ++ ++ C G+ KAC + E M+E G+ P L
Sbjct: 219 EMALKVWKYMRLKQFVPSMHTFSVLINGLCKKGNASKACILLEEMIEKGIRPSSVTFGKL 278
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRK 489
++ ++ G+ D + +L K+ V++
Sbjct: 279 KQLLIKEGREDVLEFLQEKMNLLVKE 304
>gi|225447241|ref|XP_002272784.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g73710-like [Vitis vinifera]
Length = 1008
Score = 42.4 bits (98), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 60/130 (46%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
+++ +M V M+ + + S G A ++ M+ GI+P ++Y LS++
Sbjct: 366 DVFAEMLKLGVAMDTITFNTMIYTCGSHGHLSEAETLLTEMEERGISPDTKTYNIFLSLY 425
Query: 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492
+ G++D A + E G++P+ A+L V E V ++ +++ S +V
Sbjct: 426 ADGGNIDAALKCYRKIREVGLFPDVVTHRAVLHVLCERNMVGEVETVIAEMKRSRVRVDE 485
Query: 493 STADVIAKWF 502
+ V+ K +
Sbjct: 486 HSIPVVIKMY 495
>gi|110740372|dbj|BAF02081.1| hypothetical protein [Arabidopsis thaliana]
Length = 1089
Score = 42.4 bits (98), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 68/143 (47%), Gaps = 3/143 (2%)
Query: 367 AFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
A R F++ +M + P++ S+ A+ + + G + A ++ + + GI
Sbjct: 587 AVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEV 646
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y A++ +GD D ACS+ + M E V P+E AL+ V+ A D + +L +
Sbjct: 647 YTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAK 706
Query: 485 T-SVRKVSPSTADVIAKWFNSKE 506
+ +R + S + ++ N+K+
Sbjct: 707 SQGIRLGTISYSSLMGACCNAKD 729
>gi|359492357|ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Vitis vinifera]
Length = 476
Score = 42.4 bits (98), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
+MA + K M+ P + ++ ++ C G+ KAC + E M+E G+ P L
Sbjct: 371 EMALKVWKYMRLKQFVPSMHTFSVLINGLCKKGNASKACILLEEMIEKGIRPSSVTFGKL 430
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRK 489
++ ++ G+ D + +L K+ V++
Sbjct: 431 KQLLIKEGREDVLEFLQEKMNLLVKE 456
>gi|145353124|ref|NP_195209.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635623|sp|Q0WLC6.2|PP349_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g34830, chloroplastic; Flags: Precursor
gi|332661026|gb|AEE86426.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1089
Score = 42.4 bits (98), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 68/143 (47%), Gaps = 3/143 (2%)
Query: 367 AFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
A R F++ +M + P++ S+ A+ + + G + A ++ + + GI
Sbjct: 587 AVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEV 646
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y A++ +GD D ACS+ + M E V P+E AL+ V+ A D + +L +
Sbjct: 647 YTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAK 706
Query: 485 T-SVRKVSPSTADVIAKWFNSKE 506
+ +R + S + ++ N+K+
Sbjct: 707 SQGIRLGTISYSSLMGACCNAKD 729
>gi|42567647|ref|NP_568141.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|122223689|sp|Q0WMY5.1|PP365_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g04810, chloroplastic; AltName: Full=Maize PPR4
homolog; Short=AtPPR4; Flags: Precursor
gi|110739199|dbj|BAF01515.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
gi|332003406|gb|AED90789.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 952
Score = 42.4 bits (98), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
+K ++ EI ++M L V NE + T + + S+GD AF+ R+++ G++ +
Sbjct: 635 VEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDI 694
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHM 448
+Y L C +G + A +V + M
Sbjct: 695 FTYEALLKACCKSGRMQSALAVTKEM 720
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 42.4 bits (98), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A+ ++K MK G+ P + +Y + FC VD A + M+E+G P LL
Sbjct: 61 AYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLS 120
Query: 466 VSVEAGKGDRVYYLLHKLR 484
G D Y LL ++R
Sbjct: 121 GLCRNGLMDEAYELLDEMR 139
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 4/152 (2%)
Query: 327 LLDGRSNLERGPDDQS----RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE 382
++DG R P+ + KK ++ N+ + ++ K + R + + ++M
Sbjct: 13 MIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESG 72
Query: 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442
+ N + + V D A+ + ++M G P L +Y LS C NG +D+A
Sbjct: 73 LAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAY 132
Query: 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474
+ + M E G+ P++ + L+ + GK D
Sbjct: 133 ELLDEMRERGLQPDKFSYDTLMAGLCKTGKID 164
>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 528
Score = 42.4 bits (98), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
MK G P + +Y + C G + +A V ML+ G P LLRV V+AG+
Sbjct: 272 MKVAGCMPNVYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGR 331
Query: 473 GDRVYYLLHKLR 484
++V + ++++
Sbjct: 332 TEKVLQVYNQMK 343
>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
Length = 718
Score = 42.4 bits (98), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 112/281 (39%), Gaps = 31/281 (11%)
Query: 198 LDMCSKRG-DVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTL 256
+D C K G + + ++D+ R G++ + +N LL +CS G+ + A+S S
Sbjct: 154 IDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKG--GLWEAARSLSCEMVN 211
Query: 257 DTFEVSTMNSTELGDSRDMDNNGQLDYG------------------SSPMIDKLESNSSY 298
+ L D+ + GQLD S MID
Sbjct: 212 RGIDQDIFTYNTLLDA--VCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAG-- 267
Query: 299 RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPD--DQSRKKDWSIDNQDADE 356
R DD + FNE + LG S + N+ LL + L R + D R+ + S +D
Sbjct: 268 RLDDARNLFNEMKFLG-ISLDRVSYNT-LLSIYAKLGRFEEAMDVCREMENSGIRKDVVT 325
Query: 357 IR--LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMK 414
L K+Y + +++E+M V N + + + + G A D+ + K
Sbjct: 326 YNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFK 385
Query: 415 SLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
G+ + Y + C NG V+ A S+ + M + G+ P
Sbjct: 386 KAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP 426
>gi|125570550|gb|EAZ12065.1| hypothetical protein OsJ_01947 [Oryza sativa Japonica Group]
Length = 348
Score = 42.4 bits (98), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 4/132 (3%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
AK + G Y KM + ++ + + +M ++ M++ M++ G P L
Sbjct: 126 AKNSDVESGMNFYSKMIGNGYSPDQLTYVLLVKMLSRANRLELVVQMIQEMRTHGFEPDL 185
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
+ + + C ++AC+ E M + G+ P+ + L+R G + +L+ K
Sbjct: 186 ATSTMLIHLLCRRHQFEEACAEFEDMFKRGIVPQYITYQKLMRELKRLG----LVHLIQK 241
Query: 483 LRTSVRKVSPST 494
L +R V ST
Sbjct: 242 LTNLMRSVPHST 253
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
FQ ++ EK L V N ++ ++ GD A ++K M GI+P R+Y
Sbjct: 61 FQDAHKVLEKFPLYGVAPNISTFNSLVMGYCKHGDLAGASSVLKVMTERGISPTTRTYNY 120
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485
F N DV+ + M+ +G P++ L+++ A + + V ++ ++RT
Sbjct: 121 FFMTFAKNSDVESGMNFYSKMIGNGYSPDQLTYVLLVKMLSRANRLELVVQMIQEMRT 178
>gi|345484671|ref|XP_001602390.2| PREDICTED: leucine-rich PPR motif-containing protein,
mitochondrial-like [Nasonia vitripennis]
Length = 1339
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
+I E M E+P+NE ++ + GD A +++ MK GI P RSY L
Sbjct: 203 KILEHMSAQEIPINEVIFNSLIKGHSEAGDVQSAVKILEIMKQAGIEPSSRSYTAVLCTH 262
Query: 433 CNNGDVD 439
+GD++
Sbjct: 263 AKSGDIE 269
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A +V+ M G+ P + SY +S FC G++D+A +++ M+E GV P+ +L++
Sbjct: 239 ALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQ 298
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 61/147 (41%), Gaps = 13/147 (8%)
Query: 368 FQRGFEIYEKM----CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423
Q+G + +M CL V + A +M G D AF ++K M S G+ P L
Sbjct: 26 LQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKM----GRIDEAFGLLKSMSSKGMQPNLI 81
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
SY ++ C G + +A + E M G P+E LL + G + + ++
Sbjct: 82 SYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEM 141
Query: 484 RTSVRK-VSPSTADVIAKWFNSKEAAR 509
VR VSPS A NS AR
Sbjct: 142 ---VRNGVSPSVVTYTA-LINSMCKAR 164
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A+ K M+ G P +Y +S FC +G+V+KA V + MLE G P+ +L
Sbjct: 593 DAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSL 652
Query: 464 LR 465
+R
Sbjct: 653 MR 654
Score = 39.7 bits (91), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%)
Query: 403 GDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462
GD A M++ M G P L +Y ++ C V+ A +V + MLE G P+ +
Sbjct: 522 GDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTS 581
Query: 463 LLRVSVEAGKGDRVYYLLHKLRTS 486
L+ + K D Y +R S
Sbjct: 582 LIDGFCKINKMDAAYQCFKTMRDS 605
>gi|449453031|ref|XP_004144262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g26500-like [Cucumis sativus]
Length = 505
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+Y + FCN GD+ +A + M++ G PE +E ++ V + K D L L
Sbjct: 217 TYKLLIKGFCNVGDLIEASKMWNLMVDEGFEPEMEAVEEMMNVLFKTNKLDEALKLFQAL 276
Query: 484 RTS-VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKG 528
R+ + + PST ++ +W +K ++G+ ++ D M +G
Sbjct: 277 RSDRMNDLIPSTYSLVIRWLCNK--GKVGQA----FIVFDEMHKRG 316
>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
Length = 717
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 39/66 (59%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G D+A ++++ M++ + P + +Y +S +C G++D A + + ML+ GV P+
Sbjct: 376 LGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAIT 435
Query: 460 LEALLR 465
+L+R
Sbjct: 436 YSSLIR 441
Score = 41.2 bits (95), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G+ D AF + ++M G+ P +Y + C ++ AC + E+ML+ GV P+E
Sbjct: 411 VGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFT 470
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRK-VSPSTADV------IAKWFNSKEAARLGK 512
L+ + G ++ L ++ +RK V P ++K +KEA RL
Sbjct: 471 YTTLIDGHCKEGNVEKALSLHDEM---IRKGVLPDVVTYSVLINGLSKSARTKEAHRLLF 527
Query: 513 KKWNESLIKDTME 525
K ++E + D ++
Sbjct: 528 KLYHEDPVPDNIK 540
>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
Length = 782
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
D A + +M+ G+NP + YG + V C +G VD A E M++ G+ P
Sbjct: 393 DQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTP 444
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 15/157 (9%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
GD D A+ M GI P + +Y ++ C +DKA V M+++GV P+
Sbjct: 215 GDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTY 274
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP------STADVIAKWFNSKEAARLGKKK 514
++L +G+ L K+R+ V P S + + K S EA +K
Sbjct: 275 NSILHGYCSSGQPKEAIGTLKKMRSD--GVEPNVVTYSSLMNYLCKNGRSTEA-----RK 327
Query: 515 WNESLIKDTMENKGGGWHGL--GWLGKGKWIVSHTTV 549
+S+ K +E + L G+ KG + H +
Sbjct: 328 IFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALL 364
>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 707
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 61/125 (48%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
LS KK + + ++E+M D+ + S + ++ GD A ++ M G+
Sbjct: 536 LSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGL 595
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478
+P L +Y ++ F G +D+A S + M++ G P+ +++L+ + G+ D++
Sbjct: 596 SPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDAHICDSVLKYCISQGETDKLTE 655
Query: 479 LLHKL 483
+ KL
Sbjct: 656 FVKKL 660
>gi|242060336|ref|XP_002451457.1| hypothetical protein SORBIDRAFT_04g002270 [Sorghum bicolor]
gi|241931288|gb|EES04433.1| hypothetical protein SORBIDRAFT_04g002270 [Sorghum bicolor]
Length = 917
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G ++A + + LGI+P Y + C+ G+ ++AC + E + G +P
Sbjct: 408 GLVEVAMHLYRSRMELGIDPNKDVYNNLIRALCHGGETEEACQLLEDAMTGGYFPGRQTF 467
Query: 461 EALLRVSVEAGKGDRVYYLLHK-LRTSVRKVSPSTADVIAKWFNS 504
L V + GK DRV LL + L+ V + A +A S
Sbjct: 468 SMLANVLCQEGKLDRVRELLDRALKQEVWTIDSVLAKYLAALCKS 512
>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A ++ RM G P L SY + + GD +A + E M+E G PE +L
Sbjct: 327 DAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSL 386
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPST----ADVIAKWFNSKEAARLGKKKWNESL 519
+ G+ D + +L ++ T+ + T D++ K ++ AARL ++ ++ +
Sbjct: 387 IHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGV 446
Query: 520 IKDTM 524
DT+
Sbjct: 447 EPDTL 451
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 2/147 (1%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
F+R +Y+K+ ++ + + R G D A +M + MK G P +YG
Sbjct: 81 FERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGF 140
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
++ G V +A S + MLE G+ P P L+ + G+ D L +++
Sbjct: 141 LVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRG 200
Query: 488 RKVSPSTADVIAKWFNSKEAARLGKKK 514
+ S T +++ S A R+G +
Sbjct: 201 FQPSVVTYNILLDALCS--AGRVGAAR 225
>gi|115452331|ref|NP_001049766.1| Os03g0284900 [Oryza sativa Japonica Group]
gi|108707551|gb|ABF95346.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|108707553|gb|ABF95348.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548237|dbj|BAF11680.1| Os03g0284900 [Oryza sativa Japonica Group]
gi|215686909|dbj|BAG90779.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 819
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%)
Query: 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
+A D+ + M+S G+ L ++ ++ + N+G VD+A + E M G P P +L
Sbjct: 372 LASDIKQDMQSAGVRLNLVTWSSLINAYANSGLVDRAIEILEEMTRDGCQPTAPCFNIIL 431
Query: 465 RVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493
V++ + DR + L + + K+S S
Sbjct: 432 TGCVKSCQYDRAFRLFYDWKEYGVKISLS 460
>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
Length = 878
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
D A + +M+ G+NP + YG + V C +G VD A E M++ G+ P
Sbjct: 393 DQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTP 444
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 15/157 (9%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
GD D A+ M GI P + +Y ++ C +DKA V M+++GV P+
Sbjct: 215 GDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTY 274
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP------STADVIAKWFNSKEAARLGKKK 514
++L +G+ L K+R+ V P S + + K S EA +K
Sbjct: 275 NSILHGYCSSGQPKEAIGTLKKMRSD--GVEPNVVTYSSLMNYLCKNGRSTEA-----RK 327
Query: 515 WNESLIKDTMENKGGGWHGL--GWLGKGKWIVSHTTV 549
+S+ K +E + L G+ KG + H +
Sbjct: 328 IFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALL 364
>gi|259490098|ref|NP_001159276.1| uncharacterized protein LOC100304366 [Zea mays]
gi|223943161|gb|ACN25664.1| unknown [Zea mays]
gi|414590092|tpg|DAA40663.1| TPA: hypothetical protein ZEAMMB73_658820 [Zea mays]
gi|414590093|tpg|DAA40664.1| TPA: hypothetical protein ZEAMMB73_658820 [Zea mays]
Length = 535
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 73/185 (39%), Gaps = 7/185 (3%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
R E+ +M P N + A+ R + G + + +M+ L P + +Y +
Sbjct: 293 RAQELLCQMIDSGCPPNTTTFNAIMRSHVKAGRSEQVLQVHNQMQQLRCEPDVITYNFLI 352
Query: 430 SVFCN--NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
C G++D A V + M P+ + R+ + G + L K+R
Sbjct: 353 ETHCGKGQGNLDAALKVLDKMTAKKCVPDCHTFNPMFRLLLVLGNIGAAHKLYEKMRELQ 412
Query: 488 RKVSPSTADVIAKWFNSKEAARL---GKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIV 544
K + T + + + FN +++ + KK + I+ M + G+G W
Sbjct: 413 CKPNVVTYNCLLRLFNKEKSMDMVLRMKKDMDAEGIEPNMHTYAALIE--AFCGRGNWKR 470
Query: 545 SHTTV 549
+HTT+
Sbjct: 471 AHTTL 475
>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
Length = 895
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
D D AF+++ M++ GI P + SYG ++ C NG+ +A ++ E M+ G+ P
Sbjct: 433 DKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKP 486
>gi|108706850|gb|ABF94645.1| expressed protein [Oryza sativa Japonica Group]
Length = 476
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 383 VPMNEASLTAVGRMAMSMGDG-DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441
VP ++ TA+ R S D D + + M++LG +P Y +S+ C+ V +A
Sbjct: 57 VPPTASAFTALLR---SSSDALDFVDSVFRAMEALGCSPDAAVYNWVISMLCDFQLVQEA 113
Query: 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKW 501
+HMLE+G P A+LR E G R + + T ++ P DV++
Sbjct: 114 LGFLDHMLENGPRPTARSFTAILRAYCEQG---RFFDAGRLVDTMIQNGCPP--DVVSYT 168
Query: 502 FNSKEAARLGKKKWNESLIKDTMENKGGGW 531
+ R+G+ E ++ E++ GW
Sbjct: 169 VLIEGLCRVGEFSTVEMILG---ESESQGW 195
>gi|218191356|gb|EEC73783.1| hypothetical protein OsI_08468 [Oryza sativa Indica Group]
Length = 616
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
M G P + +Y + V C G+V+ A +V + ML G P L+R AGK
Sbjct: 300 MAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMLVKGYVPNVVTYTVLIRGLCHAGK 359
Query: 473 GDRVYYLLHKLRTSVRKVSPSTADVIAKWF 502
DR LL +++ + T +V+ ++
Sbjct: 360 IDRGLKLLERMKNGGCEPIVQTYNVLIRYL 389
>gi|299469655|emb|CBN76509.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 787
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 383 VPMNEASLTAVGRMAMSMGDGDM---AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439
VP N S TA + G GD A ++++ M S+G++P R+Y A++ N+G +
Sbjct: 562 VPPNVISYTAA---IAACGKGDQWKQALELLREMASMGVSPNDRTYTAAITACGNSGKWE 618
Query: 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
+A S+ M G P A ++ G+ +R L +L ++
Sbjct: 619 EALSLLREMPTMGADPNIASYTATIKACGNGGQWERAVELFRELPSA 665
>gi|356495305|ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
mitochondrial-like [Glycine max]
Length = 618
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456
G + A +V+ + + G P +Y P + V C NGD+ KA V M++ G+ P+
Sbjct: 535 GKVESALKLVEDITARGCVPNTETYSPLIDVLCRNGDLQKAMQVFMQMVDKGILPD 590
>gi|224115578|ref|XP_002332091.1| predicted protein [Populus trichocarpa]
gi|222874911|gb|EEF12042.1| predicted protein [Populus trichocarpa]
Length = 521
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
+A+ +M +G+ P + +Y +S C +G +D+AC + + ML GV P+E + ++
Sbjct: 246 LAYSYSCQMLKMGLLPDVFTYNTLVSSLCKSGKLDEACYMHDVMLRMGVAPDEVSYKLII 305
Query: 465 RVSVEAGKGDR 475
+ G D+
Sbjct: 306 QGLCVCGDVDK 316
>gi|449464228|ref|XP_004149831.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77405-like [Cucumis sativus]
gi|449518241|ref|XP_004166151.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77405-like [Cucumis sativus]
Length = 445
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINP 420
K Y QR E++E M N + + R ++ + D A M++ M+ + GI
Sbjct: 300 CKTYRIQRALELFEDMSKRGCTPNRLTYNSFIRYYSAVNEIDQAIKMLRMMQKMNHGIAT 359
Query: 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473
SY P + C G V +A +LE G P E + + + AGK
Sbjct: 360 S-SSYTPIIHALCEGGKVIEARDFLLELLEEGSVPREYTYQLVCNLLNSAGKA 411
>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
Length = 568
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
R FEI +M + ++ + + R +G D A ++ M GI P L +Y
Sbjct: 413 IDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNT 472
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474
+S + GDV A + M+ G P AL++ + G+GD
Sbjct: 473 LISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGD 519
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 399 SMGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-VYPE 456
S G A D+++ M+ G I P +YG +S +C G VD+A V + ML G V PE
Sbjct: 197 SRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPE 256
Query: 457 EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495
AL+ + GK D LL++ R R V+ + A
Sbjct: 257 AVMYNALIGGYCDQGKLDTA--LLYRDRMVERGVAMTVA 293
>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Glycine max]
Length = 725
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 8/145 (5%)
Query: 402 DGD---MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458
DGD +A ++ M S G++P + ++G + C +VD ACS+ M +HG P
Sbjct: 182 DGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSV 241
Query: 459 ELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA-DVIAKWFNS---KEAARLGKKK 514
+ L+ E + LL + + T DVI + EAA+L +
Sbjct: 242 IYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRM 301
Query: 515 WNESLIKDTMENKGGGWHGLGWLGK 539
D + G HGL +G+
Sbjct: 302 LLRGFSTDAL-TYGYLMHGLCRMGQ 325
>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
Length = 791
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
D A + +M+ G+NP + +YG + + C +G VD A E M++ G+ P
Sbjct: 388 DEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTP 439
>gi|326527431|dbj|BAK07990.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 912
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G ++A + + LG+NP Y + C G ++AC V E +E G +P
Sbjct: 403 GLVEVAMHLYRSRMELGVNPNKDVYNNLIRALCRGGATEEACLVLEQSMEDGYFPGRQTF 462
Query: 461 EALLRVSVEAGKGDRVYYLLHK 482
V + GK D+V LL +
Sbjct: 463 AMFANVLCQEGKLDKVRELLDR 484
>gi|298708556|emb|CBJ30641.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 520
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 62/150 (41%), Gaps = 4/150 (2%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
A+ ++ + E M +D V E A+ R G D D + MK +G+ P +
Sbjct: 232 ARAGKWEEATNLMEMMKVDGVRATEKFYMALLRATGEGGRTDKTLDFFEEMKEIGLKPGV 291
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
RSY A+ G + A + M E G+ P + A +R AG+ + L
Sbjct: 292 RSYNCAVGACGKAGSWEGAMKLLTEMHEEGMRPAGFAVAATIRACSSAGEWRKG---LEV 348
Query: 483 LRTSVRKVSPSTADVIAKWFNSKEAARLGK 512
LR S ++V PS D + + R GK
Sbjct: 349 LRQS-QQVKPSKPDPCSLGAAVEMCCRAGK 377
>gi|358346363|ref|XP_003637238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503173|gb|AES84376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A D++ MKS GI P +Y + C G V+KA S + ML P + L++
Sbjct: 329 ALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPITHKFLVK 388
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTME 525
+ K D++ + KL S ++S + + + F RLG + ++ D M
Sbjct: 389 AYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVF-----CRLGMTR-KAKVVLDEMV 442
Query: 526 NKG 528
+G
Sbjct: 443 KRG 445
>gi|297798436|ref|XP_002867102.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297312938|gb|EFH43361.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 1094
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 68/143 (47%), Gaps = 3/143 (2%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
A R F++ +M + P++ +T A+ + + G + A ++ + + GI
Sbjct: 592 AVDRAFDVLAEMKAETHPIDPDHITIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEV 651
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y A++ +GD D ACS+ + M E V P+E AL+ V+ A D + +L +
Sbjct: 652 YTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAK 711
Query: 485 T-SVRKVSPSTADVIAKWFNSKE 506
+ +R + S + ++ N+K+
Sbjct: 712 SQGIRLGTVSYSSLMGACCNAKD 734
>gi|409039282|gb|EKM48927.1| hypothetical protein PHACADRAFT_265975 [Phanerochaete carnosa
HHB-10118-sp]
Length = 497
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
+E V A G +A D++K ++SL + + P + FC +GDV +A V
Sbjct: 189 DEGCCINVLHTAGRHGLSSLAPDVIKALQSLNVEWAEHHFAPVVEAFCRDGDVKEAFGVL 248
Query: 446 EHMLEHGVYPEEPELEALLRV-SVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAK 500
E M + V P + V S A D Y +L LR R V + +V+ +
Sbjct: 249 ELMRNNDVPPTLETASPIYEVISGSADIVDEAYGMLEDLRNEKRTVDVAAFNVVIQ 304
>gi|357508101|ref|XP_003624339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499354|gb|AES80557.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 578
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 18/127 (14%)
Query: 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416
+R+ E+ K Q G+ I K D + EA + RM +
Sbjct: 364 LRIVEEKKLTCVQEGYSIVIKALCDHRRVEEAG------------------KLFGRMLEI 405
Query: 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476
G+ P+L Y +S+ C GD+D A V E M ++ +P+ AL+
Sbjct: 406 GLKPKLVVYNSVISMLCKLGDLDNANGVFEIMNKNRCFPDSITYIALIHAQCACKNWKVA 465
Query: 477 YYLLHKL 483
Y LL ++
Sbjct: 466 YELLMEM 472
>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
[Arabidopsis thaliana]
Length = 602
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
GD +AFDM+++M+ + + +Y + C +G +D A S+ + M G+
Sbjct: 207 GDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTY 266
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA------DVIAKWFNSKEAARLGKK 513
+L+R +AGK + LL + + R++ P+ DV K +EA L K+
Sbjct: 267 NSLVRGLCKAGKWNDGALLLKDMVS--REIVPNVITFNVLLDVFVKEGKLQEANELYKE 323
>gi|218192338|gb|EEC74765.1| hypothetical protein OsI_10532 [Oryza sativa Indica Group]
Length = 533
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 383 VPMNEASLTAVGRMAMSMGDG-DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441
VP ++ TA+ R S D D + + M++LG +P Y +S+ C+ V +A
Sbjct: 114 VPPTASAFTALLR---SSSDALDFVDSVFRAMEALGCSPDAAVYNWVISMLCDFQLVQEA 170
Query: 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKW 501
+HMLE+G P A+LR E G R + + T ++ P DV++
Sbjct: 171 LGFLDHMLENGPRPTARSFTAILRAYCEQG---RFFDAGRLVDTMIQNGCPP--DVVSYT 225
Query: 502 FNSKEAARLGKKKWNESLIKDTMENKGGGW 531
+ R+G+ E ++ E++ GW
Sbjct: 226 VLIEGLCRVGEFSTVEMILG---ESESQGW 252
>gi|297807523|ref|XP_002871645.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317482|gb|EFH47904.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 524
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 47/106 (44%)
Query: 403 GDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462
G+ F+++ +M+ +G P + +Y + C D D + M E GV P+
Sbjct: 370 GEEVFELLAKMRKMGCQPTVDTYIMLIRKLCRWRDFDNVLLLWNEMKEKGVGPDLSSYIV 429
Query: 463 LLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAA 508
++ GK + Y +++ + + + D+I WF+ K+ A
Sbjct: 430 MIHGLFLNGKIEEAYGYYKEMKEKGMRPNENVEDMIQSWFSGKQYA 475
>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
Length = 491
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433
I+E+M + N + V R G+ + A + + RMK G P +++Y + FC
Sbjct: 332 IFEEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFC 391
Query: 434 NNGDVDKACSVEEHMLEHGVYP 455
+ G++DKA + + M P
Sbjct: 392 DEGEIDKALDLFQKMTSGDCLP 413
>gi|115451563|ref|NP_001049382.1| Os03g0216300 [Oryza sativa Japonica Group]
gi|108706849|gb|ABF94644.1| expressed protein [Oryza sativa Japonica Group]
gi|113547853|dbj|BAF11296.1| Os03g0216300 [Oryza sativa Japonica Group]
gi|215734993|dbj|BAG95715.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 533
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 383 VPMNEASLTAVGRMAMSMGDG-DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441
VP ++ TA+ R S D D + + M++LG +P Y +S+ C+ V +A
Sbjct: 114 VPPTASAFTALLR---SSSDALDFVDSVFRAMEALGCSPDAAVYNWVISMLCDFQLVQEA 170
Query: 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKW 501
+HMLE+G P A+LR E G R + + T ++ P DV++
Sbjct: 171 LGFLDHMLENGPRPTARSFTAILRAYCEQG---RFFDAGRLVDTMIQNGCPP--DVVSYT 225
Query: 502 FNSKEAARLGKKKWNESLIKDTMENKGGGW 531
+ R+G+ E ++ E++ GW
Sbjct: 226 VLIEGLCRVGEFSTVEMILG---ESESQGW 252
>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 894
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
K + ++++E M + NE S T + +G D A ++ +MK G P +
Sbjct: 236 CKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDV 295
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474
+Y ++ FC G +A E M+E+G+ P L+ + GK D
Sbjct: 296 PTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMD 347
>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
Length = 762
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
D A + +M+ G+NP + +YG + + C +G VD A E M++ G+ P
Sbjct: 388 DEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTP 439
>gi|222624458|gb|EEE58590.1| hypothetical protein OsJ_09919 [Oryza sativa Japonica Group]
Length = 465
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 383 VPMNEASLTAVGRMAMSMGDG-DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441
VP ++ TA+ R S D D + + M++LG +P Y +S+ C+ V +A
Sbjct: 114 VPPTASAFTALLR---SSSDALDFVDSVFRAMEALGCSPDAAVYNWVISMLCDFQLVQEA 170
Query: 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKW 501
+HMLE+G P A+LR E G R + + T ++ P DV++
Sbjct: 171 LGFLDHMLENGPRPTARSFTAILRAYCEQG---RFFDAGRLVDTMIQNGCPP--DVVSYT 225
Query: 502 FNSKEAARLGKKKWNESLIKDTMENKGGGW 531
+ R+G+ E ++ E++ GW
Sbjct: 226 VLIEGLCRVGEFSTVEMILG---ESESQGW 252
>gi|218184813|gb|EEC67240.1| hypothetical protein OsI_34171 [Oryza sativa Indica Group]
Length = 458
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
D A + +M+ G+NP + YG + V C +G VD A E M++ G+ P
Sbjct: 396 DQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTP 447
>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 966
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
++YE+M + +N+ + R +G + AF +VK M G P +Y ++
Sbjct: 403 KVYEEMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFL 462
Query: 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471
C VDKA + + M + GV P+ L+ +AG
Sbjct: 463 CQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAG 501
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 54/116 (46%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
F++ F+I ++M + ++ T V D AF + + MK +G+NP + +Y
Sbjct: 433 FEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTI 492
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+ FC G +++A S + M G P ALL +++ + + + H++
Sbjct: 493 LIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRM 548
>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
Length = 455
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
R FEI +M + ++ + + R +G D A ++ M GI P L +Y
Sbjct: 300 IDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNT 359
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474
+S + GDV A + M+ G P AL++ + G+GD
Sbjct: 360 LISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGD 406
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 399 SMGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-VYPE 456
S G A D+++ M+ G I P +YG +S +C G VD+A V + ML G V PE
Sbjct: 84 SRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPE 143
Query: 457 EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495
AL+ + GK D LL++ R R V+ + A
Sbjct: 144 AVMYNALIGGYCDQGKLDTA--LLYRDRMVERGVAMTVA 180
>gi|147771903|emb|CAN75708.1| hypothetical protein VITISV_031421 [Vitis vinifera]
Length = 1313
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 60/130 (46%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
+++ +M V M+ + + S G A ++ M+ GI+P ++Y LS++
Sbjct: 671 DVFAEMLKLGVAMDTITFNTMIYTCGSHGHLSEAETLLTEMEERGISPDTKTYNIFLSLY 730
Query: 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492
+ G++D A + E G++P+ A+L V E V ++ +++ S +V
Sbjct: 731 ADGGNIDAALKCYRKIREVGLFPDVVTHRAVLHVLCERNMVGEVETVIAEMKRSRVRVDE 790
Query: 493 STADVIAKWF 502
+ V+ K +
Sbjct: 791 HSIPVVIKMY 800
>gi|449462001|ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
chloroplastic-like [Cucumis sativus]
gi|449521148|ref|XP_004167592.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
chloroplastic-like [Cucumis sativus]
Length = 710
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448
+ + +G+M GD D +++ MKS+ + P L Y L G A S+ + M
Sbjct: 292 TFSVLGKMFGEAGDYDGIMYVLQEMKSIEMQPNLVVYNTLLDAMGKAGKPGFARSLFDEM 351
Query: 449 LEHGVYPEEPELEALLRV 466
+E G+ P E L AL+++
Sbjct: 352 VESGITPNEKTLTALVKI 369
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 364 KKYAFQRGFEIYE----KMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
K + R F++ E +M + ++ + + + A D A + +RM G+
Sbjct: 193 KSLRYGRQFQLIEDLANEMISAGIELDNITYSTIITCAKKCSRFDKAMEWFERMYKTGLM 252
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
P +Y L V+ N G V++ S+ E G P+ L ++ EAG D + Y+
Sbjct: 253 PDEVTYSAILDVYANLGKVEEVLSLYERGRASGWTPDPYTFSVLGKMFGEAGDYDGIMYV 312
Query: 480 LHKLRT 485
L ++++
Sbjct: 313 LQEMKS 318
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A +V+ M G+ P + SY +S FC G++D+A +++ M+E GV P+ +L++
Sbjct: 443 ALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQ 502
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 61/147 (41%), Gaps = 13/147 (8%)
Query: 368 FQRGFEIYEKM----CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423
Q+G + +M CL V + A +M G D AF ++K M S G+ P L
Sbjct: 230 LQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKM----GRIDEAFGLLKSMSSKGMQPNLI 285
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
SY ++ C G + +A + E M G P+E LL + G + + ++
Sbjct: 286 SYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEM 345
Query: 484 RTSVRK-VSPSTADVIAKWFNSKEAAR 509
VR VSPS A NS AR
Sbjct: 346 ---VRNGVSPSVVTYTA-LINSMCKAR 368
>gi|147772266|emb|CAN67349.1| hypothetical protein VITISV_018089 [Vitis vinifera]
Length = 483
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 367 AFQRG---FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423
+ QRG Y +M + N +L V G + A ++ K+M+++G +P +
Sbjct: 158 SLQRGDIALTFYREMQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKKMETMGFSPTIT 217
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
SY ++ +CN G ++ ++ M ++GV P++ L+ GK
Sbjct: 218 SYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGK 266
Score = 39.3 bits (90), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442
VP N ++ +A+ + + AF + K M G +P ++ +S FC N D D A
Sbjct: 353 VP-NSSTFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGAV 411
Query: 443 SVEEHMLEHGVYPEEPELEALLR 465
V M E + P+ L L R
Sbjct: 412 EVVREMSERSIAPDSDTLSELCR 434
>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
Length = 888
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
F F I+E M + + A + MG+ D A + +RMK + P R++ P
Sbjct: 479 FANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRP 538
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
+ F GD+ +A + M G P AL+ + + +R +L K+ S+
Sbjct: 539 IIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKM--SI 596
Query: 488 RKVSPS 493
++P+
Sbjct: 597 AGIAPN 602
Score = 39.7 bits (91), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 52/119 (43%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
Q + +M ++P N + GD A D++K+MK GI P + ++
Sbjct: 654 MQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTS 713
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
++ C GD+ +A +V + M + G+ P L++ + DR +++++
Sbjct: 714 YINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAKVSLPDRALKCFEEMKSA 772
>gi|357449261|ref|XP_003594907.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483955|gb|AES65158.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1385
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
MAFD+VK++ LG+ P + +Y + F D+A + +LE+G P + L+
Sbjct: 812 MAFDLVKQLNMLGVTPNVDTYNSLFNGFVRTCSFDEARCILHALLENGYAPTCKQFTTLI 871
Query: 465 R 465
R
Sbjct: 872 R 872
>gi|218191848|gb|EEC74275.1| hypothetical protein OsI_09511 [Oryza sativa Indica Group]
Length = 933
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 8/173 (4%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
+ ++M +PM+ + G D A ++ MK G++P + +Y P +
Sbjct: 188 ALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIV 247
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL---LHKLRTSV 487
+C V++A + E M+ +GV + L AL+ G+ Y L + K+
Sbjct: 248 YYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAVP 307
Query: 488 RKVSPST-ADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539
V+ T D +AK KE L + + ++ D + + WLGK
Sbjct: 308 NHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTA----LMDWLGK 356
>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16710, mitochondrial; Flags: Precursor
gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 507
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
++ I+E M E+ +N + T + + +G + AFD+ + S G+ P + +Y
Sbjct: 415 EKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTM 474
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEE 457
+S FC G + +A S+ + M E G P E
Sbjct: 475 ISGFCRRGLIHEADSLFKKMKEDGFLPNE 503
>gi|357162631|ref|XP_003579471.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Brachypodium distachyon]
Length = 544
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 401 GDGDMAFDMVKRMK----SLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456
GDGD A +++RM+ S +P SY A+S G A ++ + ML HGV P
Sbjct: 68 GDGDGALRVLRRMRHASSSPACDPTADSYISAMSALSKAGRPADAAALFDDMLAHGVVPN 127
Query: 457 EPELEALLRV 466
P LL +
Sbjct: 128 RPAFSVLLHI 137
>gi|356510655|ref|XP_003524052.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
chloroplastic-like [Glycine max]
Length = 712
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448
+ + +G+M GD D + + M+S+G+ P L Y L G A + E M
Sbjct: 296 TFSVLGKMFGEAGDYDGIRYVFQEMESVGVQPNLVVYNTLLEAMGKAGKPGFARGLFEEM 355
Query: 449 LEHGVYPEEPELEALLRV 466
+E G+ P E L A++++
Sbjct: 356 IESGIVPNEKTLTAVIKI 373
>gi|298714808|emb|CBJ25707.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1273
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457
++ D D A +++ MKS I P +Y +S+ +GDV +A + E +G+ P
Sbjct: 725 LACNDWDKAEEILSMMKSRAIKPNEVTYTELISICGRSGDVHQALAQLERARRNGLSPNL 784
Query: 458 PELEALLRVSVEAGKGDRVYYLLHKLRTS 486
A + V + G+ DR LL +++TS
Sbjct: 785 INYNACVDVCAKTGEVDRALALLEQMQTS 813
>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 817
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D F ++++M+ +G+ P + SYG ++ C +G + +A V M+ GV P L
Sbjct: 473 DRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNML 532
Query: 464 LRVSVEAGK 472
+ S GK
Sbjct: 533 IDGSCMVGK 541
Score = 39.7 bits (91), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 1/144 (0%)
Query: 340 DQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS 399
+Q+ +K I+N I L+ K+ ++ EI +K + + +E
Sbjct: 340 EQATEKGIRINNYTGS-ILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCR 398
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+GD + A ++RM+S G+ P ++ + FC+ ++DKA + M E GV P
Sbjct: 399 IGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVET 458
Query: 460 LEALLRVSVEAGKGDRVYYLLHKL 483
L+ + DR + +L ++
Sbjct: 459 YNTLIDGYGKLCTFDRCFQILEQM 482
>gi|449446895|ref|XP_004141206.1| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
chloroplastic-like [Cucumis sativus]
Length = 668
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Query: 365 KYAFQRGFEIYEKM-----CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
K+ + + E+ +++ C+D V + +L A+ + D + F+ +M++ G +
Sbjct: 221 KHGYAKAMELLKELQDNGLCMDCV--SYGTLIAICASHNRLEDAERFFN---QMRAEGHS 275
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
P + YG L+ + NGD KA + E M G+ P + L LL+V V G ++ L
Sbjct: 276 PNMFHYGSLLNAYSINGDYKKADELIEDMKLTGLVPNKVILTTLLKVYVRGGLFEKSRKL 335
Query: 480 LHKLRT 485
L +L +
Sbjct: 336 LSELES 341
>gi|297738205|emb|CBI27406.3| unnamed protein product [Vitis vinifera]
Length = 821
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 70/343 (20%), Positives = 138/343 (40%), Gaps = 40/343 (11%)
Query: 202 SKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY-LCSSAAVGVVKPAKSGSGMRTLDTFE 260
+ G++ + +L +K +G+KL Y VLL LC K + + L E
Sbjct: 386 CQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLC--------KSGRIDEAVILLHEME 437
Query: 261 VSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320
V + L SR Y M K +S+ + S EK G S
Sbjct: 438 VIGLKPDLLTYSRGAVEEAIELY--EEMCSKRIYPNSFVCSAIISGLFEK---GAISEAQ 492
Query: 321 MKLNSQ--------------LLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366
M +S ++DG + L G ++ + I + ++ ++ Y
Sbjct: 493 MYFDSVTKSDVAEEIILYNIMIDGYAKL--GNIGEAVRSYKQIIEKGISPTIVTFNSLIY 550
Query: 367 AFQRGFEIYEKM-CLDEVPMNEASLTAVGRMAMSMG---DGDM--AFDMVKRMKSLGINP 420
F + ++ E + LD + ++ T+V + G +GDM FDM+ M++ I P
Sbjct: 551 GFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKP 610
Query: 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480
+Y + C G + ++ + ++M G++P++ +++ +A + + L
Sbjct: 611 TQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLH 670
Query: 481 HKLRTSVRKVSPSTADV----IAKWFNSKEAARLGKKKWNESL 519
+++ + SP T +V + + N K+A RL ++S+
Sbjct: 671 NQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSI 713
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A+ +V+RM G+NP L +Y + C G+++++ ++E ML G+ LL
Sbjct: 359 AWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLS 418
Query: 466 VSVEAGKGDRVYYLLHKLRT 485
++G+ D LLH++
Sbjct: 419 SLCKSGRIDEAVILLHEMEV 438
>gi|255559020|ref|XP_002520533.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540375|gb|EEF41946.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 547
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
Query: 352 QDADEIRLSEDAKKYA----FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF 407
Q+ D + L+ YA + GF + E+M + ++ N + + GD M
Sbjct: 192 QEKDLVALNAMVLGYAQNGFAKEGFLLVEQMQMLDIKPNLVTWNTLISGFAQAGDKVMVQ 251
Query: 408 DMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
++ M G P + S+ +S F N + A + + ML+HG YP + +LL
Sbjct: 252 ELFGLMSMHGFEPDVISWTSVISRFVQNSHNEAAFAAFKQMLQHGAYPNSATISSLL 308
>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 1/164 (0%)
Query: 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRM 413
A + L AK + ++++E M + + T + RM G D + + + M
Sbjct: 225 AFNMLLDALAKDQKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAM 284
Query: 414 KSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473
G L +Y + DKA + M+E+G P E LL V V G+
Sbjct: 285 LEKGFTLNLIAYNTMIEALAKGRMADKAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQL 344
Query: 474 DRVYYLLHKLRTSVRK-VSPSTADVIAKWFNSKEAARLGKKKWN 516
+++ ++ + + K + ++K +S EA RL WN
Sbjct: 345 NKLDNIVEMSKKYMNKQIYAYFVRTLSKLGHSSEAHRLFCNMWN 388
>gi|413944227|gb|AFW76876.1| hypothetical protein ZEAMMB73_037126 [Zea mays]
Length = 595
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A+++++ MK +G+ P + +Y LS C GD + HM++ G P L+
Sbjct: 401 AYELLEEMKGVGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVVTFGTLVH 460
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPST 494
+AGK D + + + ++ P+T
Sbjct: 461 GYCKAGKTDEALRIFRSMDEA--RIQPNT 487
>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
Length = 650
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 56/130 (43%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
KK + E++++M L + N + + D AF+++ +M S G+ P
Sbjct: 380 CKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNN 439
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
+Y L+ +C GD+ KA + E M +G + L+ +AG+ +L
Sbjct: 440 ITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRG 499
Query: 483 LRTSVRKVSP 492
+R + +P
Sbjct: 500 MRIKGMRPTP 509
>gi|449442465|ref|XP_004139002.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g47360-like [Cucumis sativus]
gi|449505643|ref|XP_004162530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g47360-like [Cucumis sativus]
Length = 475
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 104/263 (39%), Gaps = 32/263 (12%)
Query: 255 TLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314
TL TF ++T++S++L +NG LD + + KL+S NE
Sbjct: 20 TLSTFHLNTLSSSDLFYDHLEKSNGNLDKTLATLKTKLDSR----------CVNEVLYKC 69
Query: 315 QFSNGHMKLNSQLLDGRS-NLERGPDDQSRKKDW-SIDNQDADEIRLSEDAKKYAFQ--- 369
F M L + GR N SR + I+ + ED ++
Sbjct: 70 SFELSQMGLRFFIWAGRQPNYRHSSFMYSRACELIGINVSPCLLFNVIEDYRREGCLVDI 129
Query: 370 RGFEIYEKMCLDEV----------PMNEASLTA-------VGRMAMSMGDGDMAFDMVKR 412
R F+I +C + M+E L A V R+ G+ D A +++K
Sbjct: 130 RMFKIILNLCKEAKLAKEALSILRKMSEFHLRADTTMYNLVIRLFTEKGEMDKAMELMKE 189
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
M S+ I+P + +Y L FC+ G + A + + M E+G P L+ ++
Sbjct: 190 MDSVDIHPNMITYISMLKGFCDVGRWEDAYGLFKDMKENGCAPNTVVYSVLVNGAIRLRI 249
Query: 473 GDRVYYLLHKLRTSVRKVSPSTA 495
DR+ +L ++ SP+T
Sbjct: 250 MDRLMEMLKEMEKQGGTCSPNTV 272
>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
Length = 742
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 56/130 (43%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
KK + E++++M L + N + + D AF+++ +M S G+ P
Sbjct: 472 CKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNN 531
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
+Y L+ +C GD+ KA + E M +G + L+ +AG+ +L
Sbjct: 532 ITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRG 591
Query: 483 LRTSVRKVSP 492
+R + +P
Sbjct: 592 MRIKGMRPTP 601
>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
Length = 1974
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 22/197 (11%)
Query: 327 LLDGRSNLERGPD-----DQSRKKD---WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM 378
++D + ER D D + ++D W+ ++ LS +A K +Q F
Sbjct: 1520 IIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQF------ 1573
Query: 379 CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438
D VP N S +V + G + A DM +M+SLG P L ++ +S +G
Sbjct: 1574 --DSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFG 1631
Query: 439 DKACSVEEHMLEHGVYPEEPELEALLRV-----SVEAGKGDRVYYLLHKLRTSVRKVSPS 493
+A + M E G+ P + ++L S+ G+ + H+ SV V+ S
Sbjct: 1632 YEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSV-PVATS 1690
Query: 494 TADVIAKWFNSKEAARL 510
D+ AK + EA ++
Sbjct: 1691 LVDMYAKCGSIDEAKKV 1707
>gi|242042129|ref|XP_002468459.1| hypothetical protein SORBIDRAFT_01g046280 [Sorghum bicolor]
gi|241922313|gb|EER95457.1| hypothetical protein SORBIDRAFT_01g046280 [Sorghum bicolor]
Length = 790
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
NE S + M +G D+A + K M++LG+ +L SY + ++ + G +++A +
Sbjct: 664 NEFSHAMMVCMYKKVGRYDVAHRICKEMQALGLLTQLLSYNSVIQMYASGGRMEEALKIF 723
Query: 446 EHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSK 505
+ ML P + +AL + V +G L LR + +T D + +W+ +
Sbjct: 724 KKMLASNTAPNDATFQALKVILVRSGVTKNETRKLELLRRN------NTHDCLRQWYRAL 777
Query: 506 EAA 508
+A
Sbjct: 778 SSA 780
>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic [Vitis vinifera]
gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
Length = 1113
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 10/225 (4%)
Query: 299 RFDDLDSTFN--EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356
R +D+ FN +K+ + + N ++ + ++L R L P + +
Sbjct: 137 RVEDMVVVFNLMQKQIIKRSINTYLTI-FKVLYIRGGLREAPVALEKMRKVGFVLNGYSY 195
Query: 357 IRLSEDAKKYAFQR-GFEIYEKMCLDEVPMNEASLTAVGRMAMSMG---DGDMAFDMVKR 412
I L K F R ++Y +M + + + SL + +++G D + +++
Sbjct: 196 IGLIHLLLKSGFCREALKVYRRMVSEGI---KPSLKTYSALMVALGKRRDIETVMGLLQE 252
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
M+SLG+ P + ++ + + G +D+A + + M + G P+ L+ AGK
Sbjct: 253 MESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGK 312
Query: 473 GDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE 517
+ L K++ S K T + F+ K+ W+E
Sbjct: 313 LNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSE 357
Score = 40.0 bits (92), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420
E+AK++ F+ E+ + C+ P+ + G+ GD + A ++ +RM GI P
Sbjct: 910 EEAKQF-FE---EMLDYGCMPNCPLYNILMNGFGKQ----GDVETACELFRRMVKEGIRP 961
Query: 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456
L+SY + C G VD A E + G+ P+
Sbjct: 962 DLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPD 997
>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
Length = 528
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
R FEI +M + ++ + + R +G D A ++ M GI P L +Y
Sbjct: 373 IDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNT 432
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474
+S + GDV A + M+ G P AL++ + G+GD
Sbjct: 433 LISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGD 479
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 399 SMGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-VYPE 456
S G A D+++ M+ G I P +YG +S +C G VD+A V + ML G V PE
Sbjct: 157 SRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPE 216
Query: 457 EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495
AL+ + GK D LL++ R R V+ + A
Sbjct: 217 AVMYNALIGGYCDQGKLDTA--LLYRDRMVERGVAMTVA 253
>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
Group]
gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
Length = 742
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 56/130 (43%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
KK + E++++M L + N + + D AF+++ +M S G+ P
Sbjct: 472 CKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNN 531
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
+Y L+ +C GD+ KA + E M +G + L+ +AG+ +L
Sbjct: 532 ITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRG 591
Query: 483 LRTSVRKVSP 492
+R + +P
Sbjct: 592 MRIKGMRPTP 601
>gi|5123700|emb|CAB45444.1| putative protein [Arabidopsis thaliana]
gi|7270434|emb|CAB80200.1| putative protein [Arabidopsis thaliana]
Length = 749
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 367 AFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
A R F++ +M + P++ S+ A+ + + G + A ++ + + GI
Sbjct: 587 AVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEV 646
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y A++ +GD D ACS+ + M E V P+E AL+ V+ A D + +L +
Sbjct: 647 YTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAK 706
Query: 485 T-SVRKVSPSTADVIAKWFNSKE 506
+ +R + S + ++ N K+
Sbjct: 707 SQGIRLGTISYSSLMGACCNEKQ 729
>gi|449447783|ref|XP_004141647.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g73710-like [Cucumis sativus]
Length = 1020
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433
++ +M + M+ + + S G A ++ +M+ G++P ++Y LS++
Sbjct: 343 VFGEMLTTGISMDTITFNTMIYTCGSHGHLAEAETLLLKMEERGLSPDTKTYNIFLSLYA 402
Query: 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469
NNG++D A + E G++P+ ALL V E
Sbjct: 403 NNGNIDGALKCYRRIREVGLFPDVVTHRALLHVLSE 438
>gi|440804148|gb|ELR25026.1| PPR repeat-containing protein [Acanthamoeba castellanii str. Neff]
Length = 715
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 42/94 (44%)
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
N A LTAV +A + D D+A ++ MK G P R+Y L V+ G VD A
Sbjct: 330 NLALLTAVLGLAATQADLDVATSVMAIMKQNGWEPNERTYTSLLRVYSQAGKVDLAYETL 389
Query: 446 EHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
M + GV P L +L V+ ++ L
Sbjct: 390 LAMPKRGVTPNVIHLNVVLGACVKTRDQQKIIAL 423
>gi|428671933|gb|EKX72848.1| pentatricopeptide repeat domain containing protein [Babesia equi]
Length = 1104
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 49/102 (48%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
+ +++ MC + V N + ++ +GD + A +++ M + I P L ++ +
Sbjct: 822 KALKMFNMMCSENVAANTVTYNSIIDACARVGDMNGAASLLEDMLNNNIEPDLITFSTII 881
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471
+C ++DK+ + M E G+ P+ +LL V++G
Sbjct: 882 KGYCVQSNMDKSFQLLSIMYERGIMPDVILYNSLLEGCVKSG 923
>gi|12324348|gb|AAG52140.1|AC022355_1 hypothetical protein; 19198-19943 [Arabidopsis thaliana]
Length = 233
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
G E++ +M + N + T + + GD DMA ++ K M S G+ P + +Y L
Sbjct: 33 GMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPDIMTYNILLD 92
Query: 431 VFCNNGDVDKACSVEEHM 448
C NG ++KA V +M
Sbjct: 93 GLCKNGKLEKALVVFGYM 110
>gi|15222950|ref|NP_172835.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174769|sp|Q9LMH5.1|PPR42_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g13800
gi|8778410|gb|AAF79418.1|AC068197_28 F16A14.3 [Arabidopsis thaliana]
gi|332190949|gb|AEE29070.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 883
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMG---DGDMAFDMVKRMKSLGINPRLRSYGPALS 430
I+++M V + A TA+ MG + M FD RM G+ P + Y ++
Sbjct: 783 IFDQMIESGVDPDAAPYTALIACCCKMGYLKEAKMIFD---RMIESGVKPDVVPYTALIA 839
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475
C NG V KA + + MLE G+ P + L A+ ++A KG R
Sbjct: 840 GCCRNGFVLKAVKLVKEMLEKGIKPTKASLSAVHYAKLKA-KGLR 883
>gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 942
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
+K ++ EI ++M L V NE + T + + S+GD AF+ R+++ G+ +
Sbjct: 636 VEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLEVDI 695
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHM 448
+Y L C +G + A +V + M
Sbjct: 696 FTYEALLKACCKSGRMQSALAVTKEM 721
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
MG+ D A VK M+ L P R++ P ++ F +GD+ ++ V + M G P
Sbjct: 568 MGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGFAKSGDMRRSLEVFDMMRRCGCVPTVHT 627
Query: 460 LEALLRVSVEAGKGDRVYYLLHKL 483
AL+ VE + ++ +L ++
Sbjct: 628 FNALINGLVEKRQMEKAVEILDEM 651
>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
Length = 552
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 39/66 (59%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G D+A ++++ M++ + P + +Y +S +C G++D A + + ML+ GV P+
Sbjct: 234 LGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAIT 293
Query: 460 LEALLR 465
+L+R
Sbjct: 294 YSSLIR 299
Score = 40.4 bits (93), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G+ D AF + ++M G+ P +Y + C ++ AC + E+ML+ GV P+E
Sbjct: 269 VGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFT 328
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRK-VSPSTA------DVIAKWFNSKEAARLGK 512
L+ + G ++ L ++ +RK V P + ++K +KEA RL
Sbjct: 329 YTTLIDGHCKEGNVEKALSLHDEM---IRKGVLPDVVTYSVLINGLSKSARTKEAHRLLF 385
Query: 513 KKWNESLIKDTME 525
K ++E + D ++
Sbjct: 386 KLYHEDPVPDNIK 398
>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
Length = 694
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 39/66 (59%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G D+A ++++ M++ + P + +Y +S +C G++D A + + ML+ GV P+
Sbjct: 376 LGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAIT 435
Query: 460 LEALLR 465
+L+R
Sbjct: 436 YSSLIR 441
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G+ D AF + ++M G+ P +Y + C ++ AC + E+ML+ GV P+E
Sbjct: 411 VGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFT 470
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRK-VSPSTADV------IAKWFNSKEAARLGK 512
L+ + G ++ L ++ +RK V P ++K +KEA RL
Sbjct: 471 YTTLIDGHCKEGNVEKALSLHDEM---IRKGVLPDVVTYSVLINGLSKSARTKEAHRLLF 527
Query: 513 KKWNESLIKDTME 525
K ++E + D ++
Sbjct: 528 KLYHEDPVPDNIK 540
>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 822
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
D+AF + RM G +P +Y ++ CN G VD+A + E M+E G+ P
Sbjct: 250 DLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEP 301
>gi|347954486|gb|AEP33743.1| chlororespiratory reduction 21, partial [Lobularia maritima]
Length = 734
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 6/153 (3%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
++ +M L VP N + + R + G A +M +M+S GI P L S+ ++
Sbjct: 441 ALRLFYEMQLQSVPPNVITRNLIMRSLLGNGQVSEAKEMFSQMQSSGIFPNLISWTTMMN 500
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR-----VSVEAGKGDRVYYLLHKLRT 485
NG ++A MLE G P + L S+ G Y + ++ +
Sbjct: 501 GLVQNGCSEEAILFLRKMLESGARPNTVSIAIALSACANLASLHLGTSIHGYIIRNQQHS 560
Query: 486 SVRKVSPSTADVIAKWFNSKEAARL-GKKKWNE 517
S V S D+ AK + +A R+ G K ++E
Sbjct: 561 SSVLVDTSLVDMYAKCGDINKAERVFGSKLYSE 593
>gi|356498877|ref|XP_003518274.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g09900-like [Glycine max]
Length = 395
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++++ M G P RSY P + FCN D+ M+ G Y + LL
Sbjct: 155 ALNVLEMMPKHGCTPNFRSYNPLIEGFCNEKSADRTIEYSRIMVSRGCYLDTVTYNILLT 214
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSP 492
+ GK D +L++L S+ SP
Sbjct: 215 ALCKDGKVDDAIEILNQL--SLNGCSP 239
>gi|325185614|emb|CCA20096.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 788
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 47/94 (50%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
++I +KM L + AS T + +++ D D AF+ M++ P + ++ +
Sbjct: 301 AYKILDKMQLAGLVPTSASFTVLINASIAKNDLDKAFETFHLMRTHVTEPDVFAFTTLIH 360
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
+ +G V++A ++ E +LE G+ P E L+
Sbjct: 361 GYAKHGRVERALNLMEDLLEAGLTPTELTFNVLI 394
>gi|302763057|ref|XP_002964950.1| hypothetical protein SELMODRAFT_406577 [Selaginella moellendorffii]
gi|300167183|gb|EFJ33788.1| hypothetical protein SELMODRAFT_406577 [Selaginella moellendorffii]
Length = 464
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%)
Query: 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442
V N + A+ R G D AFD++ M+S G ++ P + C +G D+AC
Sbjct: 192 VAPNRVAYNAMARGLSKAGLLDEAFDLMGVMESAGFALTAVTFNPVVEFLCKSGRPDEAC 251
Query: 443 SVEEHMLEHGVYPEEPELEALLRVS 467
V E ML + P L +L+ +
Sbjct: 252 KVMETMLLRNIEPNILTLNLILQAA 276
>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
and contains a RepB PF|01051 protein and multiple PPR
PF|01535 repeats [Arabidopsis thaliana]
Length = 613
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ G E++ +M + N + + + GD DMA + K+M S G+ P + +Y
Sbjct: 396 EEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSIL 455
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L C G ++KA V E++ + + P+ ++ +AGK + + L L S++
Sbjct: 456 LDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL--SLK 513
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
V P +VI R G K+ ++L ++ E+
Sbjct: 514 GVKP---NVIIYTTMISGFCRKGLKEEADALFREMKED 548
>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A + K MK P + ++ ++ C GDV +AC + E M+E G+ P L +
Sbjct: 352 ALKVWKYMKLKRFMPSMHTFQVLINGLCEKGDVTQACVLLEEMIEKGIRPSGVTFGRLRQ 411
Query: 466 VSVEAGKGDRVYYLLHKLRTSV 487
+ ++ G+ D + +L K+ V
Sbjct: 412 LLIKEGREDVLKFLQKKINVLV 433
>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
Length = 962
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
D+AF + RM G +P +Y ++ CN G VD+A + E M+E G+ P
Sbjct: 292 DLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEP 343
>gi|388515597|gb|AFK45860.1| unknown [Medicago truncatula]
Length = 197
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 7/126 (5%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D AF+ ++ K+ G P +Y +S +C + +D A + M E G+ P + +
Sbjct: 2 DEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRIDDAYRIVGEMKELGIGPNARTYDII 61
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVR-KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKD 522
L ++ G+ Y + ++ + + S ST ++ + F ++ + WNE
Sbjct: 62 LVHLIKGGRTKEAYSVFQRMSSETGCEPSVSTYAIMVRMFCNENQLDMAMVVWNE----- 116
Query: 523 TMENKG 528
M++KG
Sbjct: 117 -MKDKG 121
Score = 39.7 bits (91), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%)
Query: 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454
RM + DMA + MK GI P + + + C+ +D AC + ML+ G+
Sbjct: 99 RMFCNENQLDMAMVVWNEMKDKGILPGIHMFSTLIISLCHENKLDDACRYFQQMLDVGIR 158
Query: 455 PEEPELEALLRVSVEAGKGDRVYYLLHKL 483
P A R + AG + V + K+
Sbjct: 159 PTANMFSAFKRALMAAGMENTVIHFAKKV 187
>gi|255562037|ref|XP_002522027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538831|gb|EEF40431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 889
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458
++G D+ +DMV + G++P RS+ + +C NGD++ A L G+ P
Sbjct: 82 AVGVSDVIYDMV----AAGLSPGPRSFHGLIVAYCLNGDIEGAMQSLRRELSQGIRPLHE 137
Query: 459 ELEALLRV---SVEAGKGDRVYYLLHKLRTSVR 488
AL+R+ A +G + + KL+ +R
Sbjct: 138 TFLALIRLFGSKGHASRGLEILAAMEKLKYDIR 170
>gi|255581311|ref|XP_002531466.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528920|gb|EEF30916.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 518
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
F + KM ++ + + T V R+ GD DMA ++ M + P + +Y +
Sbjct: 147 AFLVLRKMQEFDIQADTKAYTIVIRLFCDKGDMDMAQKLMGEMSFNDLYPDMVTYVSIIK 206
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480
FC+ G +++AC + + M HG P L+ G +R LL
Sbjct: 207 GFCDIGRLEEACRLVKEMRAHGCVPNVVVYSTLVDGICRFGSVERALELL 256
>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
Length = 841
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443
PMN T + + GD D A ++ +M GI P +Y + C NG++DKA
Sbjct: 326 PMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYE 385
Query: 444 VEEHMLEHGVYPEEPELEALLRVSVEA 470
+ M + P + +L+R ++A
Sbjct: 386 IYNQMKNKDISPTVFNVNSLIRGYLKA 412
>gi|449458393|ref|XP_004146932.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g36300-like [Cucumis sativus]
Length = 455
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 379 CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438
C+DE ++ S + R +GD D A ++ M+S+G++ + SY + N G
Sbjct: 73 CIDEEELSSESCNRLIRDYCKVGDVDSAMSLLAHMESVGLHATMTSYTYLIEALGNVGRT 132
Query: 439 DKACSVEEHMLEHGVYPEEPELEALLR 465
+A + + M+ G P ALLR
Sbjct: 133 LEADIIFQEMISFGCKPRTVVCNALLR 159
>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
Length = 629
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ G E++ +M + N + + + GD DMA + K+M S G+ P + +Y
Sbjct: 412 EEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSIL 471
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L C G ++KA V E++ + + P+ ++ +AGK + + L L S++
Sbjct: 472 LDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL--SLK 529
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
V P +VI R G K+ ++L ++ E+
Sbjct: 530 GVKP---NVIIYTTMISGFCRKGLKEEADALFREMKED 564
>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62930, chloroplastic; Flags: Precursor
gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ G E++ +M + N + + + GD DMA + K+M S G+ P + +Y
Sbjct: 412 EEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSIL 471
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L C G ++KA V E++ + + P+ ++ +AGK + + L L S++
Sbjct: 472 LDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL--SLK 529
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
V P +VI R G K+ ++L ++ E+
Sbjct: 530 GVKP---NVIIYTTMISGFCRKGLKEEADALFREMKED 564
>gi|195613918|gb|ACG28789.1| leaf protein [Zea mays]
Length = 637
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A D++ +M LG+ P + ++ +S +C+ D++ A V + M + GVYP E L+
Sbjct: 401 AEDLLLQMSHLGLCPNVVTFTTVISGWCSVADMESAMRVYDKMCKSGVYPNLRTFETLIW 460
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIA 499
E + + +L +R + K ST +IA
Sbjct: 461 GYSEQKQPWKAEEVLQMMRETGVKPKQSTYCLIA 494
>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Vitis vinifera]
Length = 939
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G+ D AF + +M GI+P + +Y ++ C +GD++++ + M++ GV + E
Sbjct: 832 IGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIE 891
Query: 460 LEALLRVSVEAG---KGDRVYYLLHKLRTSVRKVSPSTADV 497
L++ + +G K ++Y ++H S +S D+
Sbjct: 892 YCTLVQGYIRSGEMQKIHKLYDMMHIRCLSTTAISHKQVDL 932
>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 867
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 406 AFDMVKRM-KSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
A DM+ RM K G +P + SY + G++ KAC++ M++ GV P +++
Sbjct: 255 ALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIV 314
Query: 465 RVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNS----KEAARLGKKKWNESLI 520
+A D+ +L ++ + + T + ++ KEAA++ K+ E LI
Sbjct: 315 HALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLI 374
Query: 521 KDTM 524
D +
Sbjct: 375 PDIV 378
>gi|356540373|ref|XP_003538664.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 881
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G+ D A + K+M+ G+ P + ++ + C GD KA + M E G+YP+
Sbjct: 273 GELDEALKLFKKMQKEGVRPNIVTWNSLIKWHCKEGDFMKAFHLFTDMQEQGLYPDPKIF 332
Query: 461 EALLRVSVEAGKGDRV--YYLLHKLR 484
++ E GK D + Y+ K+R
Sbjct: 333 VTIISCLGEQGKWDIIKKYFESMKIR 358
>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
Length = 684
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 54/134 (40%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
+Q G + +M L P++ S + + G+ D + +++ M + GI P SY
Sbjct: 507 WQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNM 566
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
++ C G V A + + ML G+ P+ L+ + G LL KL
Sbjct: 567 LINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNEN 626
Query: 488 RKVSPSTADVIAKW 501
T +++ W
Sbjct: 627 VHPDIVTYNILISW 640
>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 730
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A +++K M+S G P + +Y LS F G + A +++ M+ G+ P+ +LL
Sbjct: 242 AANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLS 301
Query: 466 VSVEAGKGDRVYYLLHKLRTS 486
AGK ++ + +++RTS
Sbjct: 302 AYSRAGKVEQAMEIYNQMRTS 322
>gi|449513167|ref|XP_004164250.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g36300-like [Cucumis sativus]
Length = 433
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 379 CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438
C+DE ++ S + R +GD D A ++ M+S+G++ + SY + N G
Sbjct: 73 CIDEEELSSESCNRLIRDYCKVGDVDSAMSLLAHMESVGLHATMTSYTYLIEALGNVGRT 132
Query: 439 DKACSVEEHMLEHGVYPEEPELEALLR 465
+A + + M+ G P ALLR
Sbjct: 133 LEADIIFQEMISFGCKPRTVVCNALLR 159
>gi|90657590|gb|ABD96889.1| hypothetical protein [Cleome spinosa]
Length = 719
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 43/104 (41%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
F+R E+Y +MC + + S G D AF++ K+M GI +Y
Sbjct: 384 FERACELYNEMCNKGYGTTTVTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAITYNS 443
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471
+ FC G VD+ ++ ++ P E L+ S + G
Sbjct: 444 LIRGFCKEGKVDERMNLLNELVAQDPQPSVSLYELLIIKSCKDG 487
>gi|414885834|tpg|DAA61848.1| TPA: leaf protein [Zea mays]
Length = 637
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A D++ +M LG+ P + ++ +S +C+ D++ A V + M + GVYP E L+
Sbjct: 401 AEDLLLQMSHLGLCPNVVTFTTVISGWCSVADMESAMRVYDKMCKSGVYPNLRTFETLIW 460
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIA 499
E + + +L +R + K ST +IA
Sbjct: 461 GYSEQKQPWKAEEVLQMMRETGVKPKQSTYCLIA 494
>gi|255542538|ref|XP_002512332.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548293|gb|EEF49784.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 619
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 42/75 (56%)
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468
+++ M+++G+ P L ++ L+ +C NG++ AC V + + E G+ + +AL+ +
Sbjct: 452 VIEMMRAIGVLPDLTAFNYLLTAYCYNGNLVDACKVMKRIEEEGLGADARTYDALVLGAC 511
Query: 469 EAGKGDRVYYLLHKL 483
GK + +L ++
Sbjct: 512 RTGKVEAALVVLRRM 526
>gi|198435115|ref|XP_002125581.1| PREDICTED: similar to CG15896 CG15896-PA [Ciona intestinalis]
Length = 607
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 82/208 (39%), Gaps = 48/208 (23%)
Query: 542 WIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASI------------AIKRERN 589
W+ + + C G++L +L E++ E +A + A+K+ RN
Sbjct: 340 WLTHNDVMCKQGFCPITGKELITTNLQEHESDYLKEIIAQVLMELVHGKSNPYALKKLRN 399
Query: 590 S------------SF--QKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIR 635
SF +F +++ +GPF+AV+D NV L + + + NGI+
Sbjct: 400 MKEEDSERGILKMSFITVRFLEFIMEHGPFDAVIDGLNVVLGTNATSNTPGLKLLYNGIK 459
Query: 636 QKFPSKKWPLIVLHNRRITGHKMDQPVNRAL---IEKWKN-----ADALYATPTGSNDDW 687
R+ K+ P+ ++ IE+ N +Y DD
Sbjct: 460 ------------FMKRKRKNMKIFLPLPYSMQPHIEQHVNDLNNVTSIMYFKSRKIMDDS 507
Query: 688 YWLYAAI--KFKCLLVTNDEMRDHTFQL 713
LYAA+ CLL++ D+ RD F +
Sbjct: 508 LLLYAAMVGNDDCLLISMDKFRDFAFYV 535
>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 5/158 (3%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ G E++ +M + N + + + GD DMA + K+M S G+ P + +Y
Sbjct: 413 EEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSIL 472
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L C G ++KA V E++ + + P ++ +AGK + + L L S++
Sbjct: 473 LDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSL--SLK 530
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
V P +VI R G K+ ++L ++ E+
Sbjct: 531 GVKP---NVIIYTTMISGFCRKGLKEEADALFREMKED 565
>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
Length = 826
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
K+ +++ +M + N + T++ GD A + M+S G+ P +
Sbjct: 566 VKQNDLHNALKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPNV 625
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
+Y + FC G + KACS E ML + P + L+
Sbjct: 626 VTYTILIGCFCKEGKISKACSFFELMLLNRCIPNDVTFNYLI 667
>gi|255575578|ref|XP_002528689.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531861|gb|EEF33678.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 271
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 8/150 (5%)
Query: 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448
+ + V R D D A ++ RM G+NP + ++ ++ FC G + KA V + M
Sbjct: 124 TFSIVIRCHCKRNDADEAKRVLDRMLENGLNPNVVTFTTLINSFCKKGKLQKAYEVIDVM 183
Query: 449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP------STADVIAKWF 502
G P LL+ GK + Y +L ++ S + P + D K
Sbjct: 184 NTIGCQPNVQTYNCLLKGLCYIGKVEEAYEILEDIKKS--SIEPDIYTYTAMMDGFCKVG 241
Query: 503 NSKEAARLGKKKWNESLIKDTMENKGGGWH 532
S+EA +L + L D G H
Sbjct: 242 RSEEAMQLLNEAIEMELTDDITFCLGCQRH 271
Score = 39.3 bits (90), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 396 MAMSMGDG-DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454
MA+ + + D+A +M + +LG+ P ++ + C D D+A V + MLE+G+
Sbjct: 95 MALVIANELDLALNMYSDVSTLGLVPDSWTFSIVIRCHCKRNDADEAKRVLDRMLENGLN 154
Query: 455 PEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485
P L+ + GK + Y ++ + T
Sbjct: 155 PNVVTFTTLINSFCKKGKLQKAYEVIDVMNT 185
>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Cucumis sativus]
Length = 581
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++++ MK G+ P SY P +S FC G +D A E M+ G P+ +L
Sbjct: 325 AVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILA 384
Query: 466 VSVEAGKGDRVYYLLHKL 483
+ G D + KL
Sbjct: 385 TLCKFGCADLALDVFEKL 402
Score = 40.4 bits (93), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 1/138 (0%)
Query: 343 RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD 402
++K + D+ D + +S K+ E EKM D + + + G
Sbjct: 333 KEKGLTPDSYSYDPL-ISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGC 391
Query: 403 GDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462
D+A D+ +++ +G P +R+Y S + G+ KA + M+ G+ P+E +
Sbjct: 392 ADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNS 451
Query: 463 LLRVSVEAGKGDRVYYLL 480
L+ G D LL
Sbjct: 452 LISCLCRDGLVDEAIGLL 469
>gi|115466100|ref|NP_001056649.1| Os06g0125300 [Oryza sativa Japonica Group]
gi|6983867|dbj|BAA90802.1| salt-inducible protein-like [Oryza sativa Japonica Group]
gi|113594689|dbj|BAF18563.1| Os06g0125300 [Oryza sativa Japonica Group]
gi|125553869|gb|EAY99474.1| hypothetical protein OsI_21443 [Oryza sativa Indica Group]
gi|125595884|gb|EAZ35664.1| hypothetical protein OsJ_19951 [Oryza sativa Japonica Group]
Length = 535
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
N S + + + +GD D A ++ M LGI P + +Y LS +C GD++ A +
Sbjct: 192 NLVSCNILLKGLVGIGDLDAALKVLDEMPGLGITPDVVTYTTVLSAYCGKGDIEGAQKLF 251
Query: 446 EHMLEHGVYPE 456
+ ++ G P+
Sbjct: 252 DDIIASGRRPD 262
>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Glycine max]
Length = 793
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D A +V M S G NP + +Y + FC G +D+A + + M +HG P
Sbjct: 425 GRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSY 484
Query: 461 EALLRVSVEAGK 472
ALL +GK
Sbjct: 485 TALLNGLCHSGK 496
>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
Length = 833
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D A+++ +M GI P + +Y + C VD+A +V + ML+ GV P
Sbjct: 318 GQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTY 377
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRT 485
L+ + GK V LL ++ T
Sbjct: 378 NCLIHGYLSTGKWKEVVRLLEEMST 402
>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 465
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 52/114 (45%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
F++Y +M + N + +A+ ++G A D+ +M S I P + ++ +
Sbjct: 246 AFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVD 305
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
VFC +G + A + + M + G P ++L + + D+ LL KL+
Sbjct: 306 VFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLK 359
>gi|356571194|ref|XP_003553764.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g04760, chloroplastic-like [Glycine max]
Length = 531
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 45/115 (39%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ GFE+ M N + + + G + ++K MK G+ P Y P
Sbjct: 245 EAGFELMSDMVAKGCEANVVTYSVLISSLCRDGKVEEGVGLLKDMKKKGLEPDGYCYDPL 304
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
++V C G VD A V + M+ G P+ +L + + D + KL
Sbjct: 305 IAVLCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKL 359
>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
Length = 941
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
F ++E + D + + + + MG+ D A MVK M+ P R++ P +
Sbjct: 523 AFAVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIH 582
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV 490
F G++ +A + + M G P AL+ VE K ++ +L ++ ++ V
Sbjct: 583 GFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEM--ALAGV 640
Query: 491 SP 492
SP
Sbjct: 641 SP 642
>gi|449446855|ref|XP_004141186.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g55840-like [Cucumis sativus]
Length = 1079
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
Query: 349 IDNQDADEIRLSEDA---------KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS 399
+D +A+++R +E K F I E+ C++ +N S T +
Sbjct: 338 LDVMEANDVRPNEVTIGTLLNGLYKSAKFDVARNILERYCINRTSLNCISHTVMIDGLCR 397
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
G D AF ++ M G++P + ++ ++ FC G+++KA V + G P
Sbjct: 398 NGLLDEAFQLLIEMCKDGVHPDIITFSVLINGFCKVGNINKAKEVMSKIYREGFVPNNVI 457
Query: 460 LEALLRVSVEAG 471
L+ S + G
Sbjct: 458 FSTLIYNSCKVG 469
>gi|357127910|ref|XP_003565620.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
mitochondrial-like [Brachypodium distachyon]
Length = 1088
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A+ ++++M + GI P R Y +S +CN G +KA + H EH + P+ L ++
Sbjct: 806 DDAYQLIQKMSNKGIRPTTRVYNLLISGYCNYGLTEKALGLMSHFEEHFLLPDAFTLGSV 865
Query: 464 L 464
+
Sbjct: 866 I 866
>gi|356563451|ref|XP_003549976.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
chloroplastic-like [Glycine max]
Length = 714
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448
+ + +G+M GD D + + M+S+G+ P L Y L G A + E M
Sbjct: 296 TFSVLGKMFGEAGDYDGIRYVFQEMESVGVQPNLVVYNTLLEAMGKAGKPVFARGLFEEM 355
Query: 449 LEHGVYPEEPELEALLRV 466
+E G+ P E L A++++
Sbjct: 356 IELGIVPNEKTLTAVIKI 373
>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Cucumis sativus]
Length = 665
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A D++++M G P SY P L C + +++A + M+ G YP+ LL
Sbjct: 371 AIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLT 430
Query: 466 VSVEAGKGDRVYYLLHKL 483
+ GK D +L++L
Sbjct: 431 ALCKDGKVDVAVEILNQL 448
>gi|348674824|gb|EGZ14642.1| hypothetical protein PHYSODRAFT_263944 [Phytophthora sojae]
Length = 843
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G A ++ RMK G+ P + Y + G V A +V E M G+ P+
Sbjct: 294 GQAAHAVRVIGRMKERGVLPDVSVYNAIMRACSKAGRVSWAYNVMEKMQVAGLVPDRASF 353
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLI 520
L+ ++ G D+ + H +RT V + + F AR G+ + +L+
Sbjct: 354 TILMNAAIAEGDLDKAFETFHLMRTHVAEPDEIAFSCLINGF-----AREGRVERALNLL 408
Query: 521 KDTME 525
+D +E
Sbjct: 409 EDLLE 413
Score = 40.4 bits (93), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
+ + EKM + + + AS T + A++ GD D AF+ M++ P ++ ++
Sbjct: 334 AYNVMEKMQVAGLVPDRASFTILMNAAIAEGDLDKAFETFHLMRTHVAEPDEIAFSCLIN 393
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKL 483
F G V++A ++ E +LE G+ P L+ + A K YY + +L
Sbjct: 394 GFAREGRVERALNLLEDLLECGLTPSLVTFNTLMNACAKSHYYAHKAIDFYYEMQEL 450
>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
Length = 915
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 368 FQRGFEIYEKMC-LDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
F+ G + ++M L VP EA+L+++ G AFD+V R+K +G P L Y
Sbjct: 312 FEVGAGVMDEMIELGFVP-TEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYN 370
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
++ C +G D+A + + M E G+ + L+ GK D + L K+ +
Sbjct: 371 ALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMA 430
Query: 487 VRKVS 491
K++
Sbjct: 431 GIKIT 435
>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
Length = 740
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
D+AF + RM G +P +Y ++ CN G VD+A + E M+E G+ P
Sbjct: 250 DLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEP 301
Score = 39.7 bits (91), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D+A ++KRM+ +G NP + SY ++ +A + + M+E G+ P
Sbjct: 527 GKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITY 586
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLI 520
L+ G+ + + H + RK P+ + + + GK E L+
Sbjct: 587 TTLIDGLCRNGRTQFAFKIFHDMEK--RKCLPNLYTYSSLIYG---LCQEGKADEAEILL 641
Query: 521 KDTMENKG 528
K+ ME KG
Sbjct: 642 KE-MERKG 648
>gi|125526118|gb|EAY74232.1| hypothetical protein OsI_02112 [Oryza sativa Indica Group]
Length = 556
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
FQ ++ EK L V N ++ ++ GD A ++K M GI+P R+Y
Sbjct: 269 FQDAHKVLEKFPLYGVAPNISTFNSLVMGYCKHGDLAGASSVLKVMTERGISPTTRTYNY 328
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485
F N DV+ + M+ +G P++ L+++ A + + V ++ ++RT
Sbjct: 329 FFMTFAKNSDVESGMNFYSKMIGNGYSPDQLTYVLLVKMLSRANRLELVVQMIQEMRT 386
Score = 40.0 bits (92), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
AK + G Y KM + ++ + + +M ++ M++ M++ G P L
Sbjct: 334 AKNSDVESGMNFYSKMIGNGYSPDQLTYVLLVKMLSRANRLELVVQMIQEMRTHGFEPDL 393
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
+ + + C ++AC+ E M + G+ P+ + L+R G + L+ K
Sbjct: 394 ATSTMLIHLLCRRHQFEEACAEFEDMFKRGIVPQYITYQKLMRELKRLG----LVRLIQK 449
Query: 483 LRTSVRKVSPST 494
L +R V ST
Sbjct: 450 LTNLMRSVPHST 461
>gi|302770889|ref|XP_002968863.1| hypothetical protein SELMODRAFT_170452 [Selaginella moellendorffii]
gi|300163368|gb|EFJ29979.1| hypothetical protein SELMODRAFT_170452 [Selaginella moellendorffii]
Length = 493
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE--- 457
G +A+ + + M G +P L Y ++ FC +D AC + E M VYP+E
Sbjct: 313 GKLPVAYKLFRHMIVRGCDPSLTIYKALITSFCRGDKLDDACKLLEFMFNKDVYPDEELY 372
Query: 458 -PELEAL---------------LRVSVEAGKGDRVYYLLHKLRTSVR 488
LE L L+ S + G+ ++ + KLR VR
Sbjct: 373 RTVLEGLERTGNGQAFDVLKNALKESADGSPGEVMFKAVFKLRGCVR 419
>gi|85000739|ref|XP_955088.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303234|emb|CAI75612.1| hypothetical protein, conserved [Theileria annulata]
Length = 559
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
+ I+ M D V N + ++ +G+ A +++ M S GI P L ++ +
Sbjct: 229 KAMRIFRLMQQDGVEPNTVTYNSIIDACARVGEMGSATRLLEEMLSSGIEPDLITFSTII 288
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471
+C D+DK+ + M E G+ P+ +LL V++G
Sbjct: 289 KGYCVQSDMDKSFQLLSVMYERGIMPDVILYNSLLEGCVKSG 330
>gi|115436834|ref|NP_001043148.1| Os01g0506100 [Oryza sativa Japonica Group]
gi|56201661|dbj|BAD73125.1| leaf protein -like [Oryza sativa Japonica Group]
gi|113532679|dbj|BAF05062.1| Os01g0506100 [Oryza sativa Japonica Group]
gi|215717162|dbj|BAG95525.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 541
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 4/132 (3%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
AK + G Y KM + ++ + + +M ++ M++ M++ G P L
Sbjct: 334 AKNSDVESGMNFYSKMIGNGYSPDQLTYVLLVKMLSRANRLELVVQMIQEMRTHGFEPDL 393
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
+ + + C ++AC+ E M + G+ P+ + L+R G + +L+ K
Sbjct: 394 ATSTMLIHLLCRRHQFEEACAEFEDMFKRGIVPQYITYQKLMRELKRLG----LVHLIQK 449
Query: 483 LRTSVRKVSPST 494
L +R V ST
Sbjct: 450 LTNLMRSVPHST 461
Score = 41.2 bits (95), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
FQ ++ EK L V N ++ ++ GD A ++K M GI+P R+Y
Sbjct: 269 FQDAHKVLEKFPLYGVAPNISTFNSLVMGYCKHGDLAGASSVLKVMTERGISPTTRTYNY 328
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485
F N DV+ + M+ +G P++ L+++ A + + V ++ ++RT
Sbjct: 329 FFMTFAKNSDVESGMNFYSKMIGNGYSPDQLTYVLLVKMLSRANRLELVVQMIQEMRT 386
>gi|224136033|ref|XP_002327364.1| predicted protein [Populus trichocarpa]
gi|222835734|gb|EEE74169.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 15/154 (9%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
++++E M +E + T + RM +G D + ++ + M + G +P + +Y +
Sbjct: 265 AYKVFEDMKRKHCEPDEYTYTIMIRMTGKIGKPDESLELFEEMLNKGYSPNVIAYNTMIQ 324
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV--- 487
N VDKA + M+E P E +L + K LHKL V
Sbjct: 325 ALANARMVDKAILLFLKMVEKECRPSEFTYSVILHLLATERK-------LHKLDEVVEVS 377
Query: 488 -----RKVSPSTADVIAKWFNSKEAARLGKKKWN 516
R + + K ++ EA RL WN
Sbjct: 378 KKYMSRSIYAYLVRTLKKLGHASEAHRLFCNMWN 411
>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 925
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G +A +M +M G P L +Y + G V++A + + + G+ P+E
Sbjct: 624 GAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTY 683
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAK 500
++ V V +GK DR + L ++ + + + T DV+ K
Sbjct: 684 VKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIK 723
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
D D AF++ RM G P +Y ++ CN+G V++A M HGV P
Sbjct: 278 DLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLP 331
>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
Length = 797
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%)
Query: 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443
P N S V + G D A+++ M GI P + +Y + C VD+A
Sbjct: 200 PPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEG 259
Query: 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
V + M++ GV P+ L+ + GK V +L ++
Sbjct: 260 VFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEM 299
>gi|124360264|gb|ABN08277.1| Pentatricopeptide repeat [Medicago truncatula]
Length = 368
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
+ + E+ +++ +++ M++ A+ + S G + A +MKS G +P + Y
Sbjct: 190 YPKALELIQELQDNKLRMDDVIYGAILAVCASNGKWEEAEYYFNQMKSEGRSPNVYHYSS 249
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485
L+ + GD KA ++ + M G+ P + L LL+V V G ++ LL KL +
Sbjct: 250 LLNAYSACGDFTKADALIQDMESEGLAPNKVILTTLLKVYVRGGLFEKSRELLAKLES 307
>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 839
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G+ D+AF+M RM G +P +Y ++ C+ G +++A + E M++ G+ P
Sbjct: 251 GNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAY 310
Query: 461 EALLRVSVEAGKGDRVYYLLHKLR 484
+ +AG+ LL K++
Sbjct: 311 TIPIVSLCDAGRSCEAVKLLGKMK 334
>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
Length = 1153
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 74/184 (40%), Gaps = 26/184 (14%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++ K M GI+P +R+Y + F DVD + M GV P +R
Sbjct: 197 AMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIR 256
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKK---WN------ 516
V +A + D Y +L K+ S K T V+ + +A RL K W
Sbjct: 257 VLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLC--DAGRLSDAKDVFWKMKASDQ 314
Query: 517 --ESLIKDTMENKGGG----------WHGLGWLGKGKWIVSHTTVGGDALCKC--CGEKL 562
+ + T+ +K G W+ + G IVS+T V DALC+ E L
Sbjct: 315 KPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAV-VDALCQVGRLDEAL 373
Query: 563 AIID 566
A+ D
Sbjct: 374 AVFD 377
>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1163
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 7/183 (3%)
Query: 300 FDDLDSTFNEKENLGQFSNGHMKLNSQLL----DGRSNLERGPDDQSRKKDWSIDNQDAD 355
F + FN +++G S + NS LL GR+N+ + D+ +
Sbjct: 172 FQESVQVFNSMKSVG-VSPSVVTFNSLLLILLKRGRTNMAQSVFDEMLSTYGVTPDTYTF 230
Query: 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRM-- 413
I + K GF +++M + + + + G ++A ++V M
Sbjct: 231 NILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNIAHNVVNGMVK 290
Query: 414 KSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473
KS +NP + +Y + +C ++D+A V E M+ G+ P E L++ E K
Sbjct: 291 KSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYNTLIKGLCEVQKI 350
Query: 474 DRV 476
D++
Sbjct: 351 DKI 353
>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
Length = 757
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 7/175 (4%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
EI+++M L V N + + + A ++ +M G+ P +Y L+ F
Sbjct: 497 EIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYF 556
Query: 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492
C GD+ KA + + M G P+ L+ +AG+ + LL ++ ++P
Sbjct: 557 CKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTP 616
Query: 493 STAD-VIAKWF---NSKEAARLGKKKWNESLIKDTMENK---GGGWHGLGWLGKG 540
+ VI F SKEA RL ++ ++ D + K G G G +G+
Sbjct: 617 HAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGGGPIGEA 671
>gi|1931651|gb|AAB65486.1| membrane-associated salt-inducible protein isolog; 88078-84012
[Arabidopsis thaliana]
Length = 652
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%)
Query: 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
K + + E+ ++ + + M+ V + S G + A + +++MK G +P +
Sbjct: 215 KNGYPKAIELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVEGHSPNIYH 274
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y L+ + GD KA + M G+ P + + LL+V ++ G DR LL +L
Sbjct: 275 YSSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSELE 334
Query: 485 TS 486
++
Sbjct: 335 SA 336
>gi|297806669|ref|XP_002871218.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317055|gb|EFH47477.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1029
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 2/130 (1%)
Query: 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423
K+ F++ E KM + + + TA+ MS+G + A+ + ++ G +P +
Sbjct: 899 KEKQFEKVLETCHKMKEESCEPSVVTYTAMICGYMSLGKVEEAWKAFRNIEEKGTSPDFK 958
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+Y ++ C G + A + ML+ G+ P + GK D +LHK
Sbjct: 959 TYSKFINCLCQAGKSEDALKLLSEMLDKGIAPSTINFRTVFYGLNREGKQDLARIVLHKK 1018
Query: 484 RTSV--RKVS 491
V RKVS
Sbjct: 1019 SALVAQRKVS 1028
Score = 40.4 bits (93), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%)
Query: 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416
I +S K +G ++EKM ++ A+ + R G GD+A + K M
Sbjct: 228 ILISVYGKAKKIGKGLLVFEKMRKSGFELDAAAYNIMIRSLCIAGRGDLALEFYKEMMEK 287
Query: 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476
GI LR+Y L + VD S+ + M+ E LL+ +GK
Sbjct: 288 GITFGLRTYKMLLDCIAKSEKVDVVQSIADDMVRICEISEHDAFGYLLKSFCVSGKIKEA 347
Query: 477 YYLLHKLR 484
L+ +L+
Sbjct: 348 LELIRELK 355
>gi|449017269|dbj|BAM80671.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 686
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 3/131 (2%)
Query: 415 SLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE-HGVYPEEPELEALLRVSVEAGKG 473
+L + P LR+Y ++ GDVDKA V M++ G+ P E LL+ G+
Sbjct: 272 NLALCPSLRTYNAVMNACVAAGDVDKAHQVFGEMVDAQGIAPNEVSYNILLKSHARRGRV 331
Query: 474 DRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHG 533
+ + +L ++R + S T + K + + ++ N+ L K +E ++
Sbjct: 332 EAMQLVLDQMRAAGCAPSLVTYTTLVKGYVTANKLEKAEEVLNDILYKKRLEPDSHLFNC 391
Query: 534 L--GWLGKGKW 542
L G++ W
Sbjct: 392 LLEGYVRANDW 402
>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
Length = 479
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 1/148 (0%)
Query: 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420
E ++ F R + +KM VP N + TA + +G A+ +RM GI P
Sbjct: 318 ELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEP 377
Query: 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480
+ +Y + FC +D A + +M + G+ P L+ GK + + LL
Sbjct: 378 DMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELL 437
Query: 481 HKLRTSVRKVSPST-ADVIAKWFNSKEA 507
H + + R+ +T + ++A F +A
Sbjct: 438 HTMVSRGRQPDVATWSTLVAGLFMVGQA 465
>gi|300121060|emb|CBK21442.2| unnamed protein product [Blastocystis hominis]
Length = 987
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%)
Query: 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
MAFD ++M+ GI P L SY L GD +A SV + E G P L LL
Sbjct: 361 MAFDYFQKMEVAGIAPSLSSYHILLEACAQRGDFVRANSVMVQLQERGFKPTSETLSLLL 420
Query: 465 RV 466
V
Sbjct: 421 MV 422
>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452
+GRM + GD D A +++M S G P R+Y + V+C+ G V +A + M E G
Sbjct: 474 IGRM-LKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEG 532
Query: 453 VYPEEPELEALLR 465
V P++ +L++
Sbjct: 533 VPPDDFTYTSLIK 545
>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
Length = 573
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 10/121 (8%)
Query: 406 AFDMVKRMK-SLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEAL 463
A++++K M+ + P L +Y ++ FC G++D+AC + M+ G+ P+ ++
Sbjct: 60 AYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSV 119
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSP---STADVIAKWFNSK---EAARLGKKKWNE 517
+ GK DR ++ +++ ++ V P + + +I W N++ EA +L K+
Sbjct: 120 VDGLCRDGKMDRACEMVREMK--LKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTS 177
Query: 518 S 518
S
Sbjct: 178 S 178
>gi|299116695|emb|CBN74840.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 295
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 29/191 (15%)
Query: 329 DGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA 388
D +S+L+ +K+DW + Q DEI+LS +D + N A
Sbjct: 89 DLKSSLKTTLHKAGKKRDWRVALQTLDEIKLSPGL----------------VDAMSYNIA 132
Query: 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448
+TA G + + A D++ M+ G+ P + + A+ + + +KA ++ + +
Sbjct: 133 -ITACGGRQL-----EKALDLLGEMEEEGVTPNIFIFNSAIKACGDADEYEKALTLLDEV 186
Query: 449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAA 508
L G+ P A + + G+ + LL ++ S R+V ADV +N+ A
Sbjct: 187 LGRGLSPNVITYNAAIGACAKCGRWQKALDLLGEM--SERQV---VADVTT--YNAVIEA 239
Query: 509 RLGKKKWNESL 519
G +W ++L
Sbjct: 240 FAGGDQWEKAL 250
>gi|226507856|ref|NP_001143319.1| uncharacterized protein LOC100275894 [Zea mays]
gi|195617622|gb|ACG30641.1| hypothetical protein [Zea mays]
Length = 665
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A + + M+ LGI P L +Y S++ GD A +V ML + P A+
Sbjct: 470 DEALRVWEHMRRLGIEPNLYAYTILASIYIGKGDHAMADAVLHDMLSKRIAPTVVTFNAI 529
Query: 464 LRVSVEAGKGDRVYYLLHKLRT 485
+ +G G + H+++T
Sbjct: 530 ISACARSGSGGNAFEWFHRMKT 551
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL-L 464
A D+ K+M G+ P + SYG LS D+A V EHM G+ EP L A +
Sbjct: 437 AVDVFKKMMERGLKPDVVSYGALLSALEKGRLYDEALRVWEHMRRLGI---EPNLYAYTI 493
Query: 465 RVSVEAGKGDRVY--YLLHKLRTSVRKVSPSTA 495
S+ GKGD +LH + + ++++P+
Sbjct: 494 LASIYIGKGDHAMADAVLHDMLS--KRIAPTVV 524
>gi|242074484|ref|XP_002447178.1| hypothetical protein SORBIDRAFT_06g029920 [Sorghum bicolor]
gi|241938361|gb|EES11506.1| hypothetical protein SORBIDRAFT_06g029920 [Sorghum bicolor]
Length = 643
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
LS+D K + ++E+M P N A TA+ +G A + +RMK+ GI
Sbjct: 326 LSKDGKPF---EALAVFERMLKRGCPANAAMYTALIDSMGKLGREKEAMALFERMKASGI 382
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453
+YG ++ C G++++A S +E GV
Sbjct: 383 ELDAVTYGVIVNCLCRFGNMEEALSCFRSCVEKGV 417
>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
Length = 486
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A+ ++ +MK +G NP + +Y ++ FC G AC + M E+G P L+
Sbjct: 327 AYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVN 386
Query: 466 VSVEAGKGD 474
GK D
Sbjct: 387 GLCNEGKFD 395
>gi|224137884|ref|XP_002326464.1| predicted protein [Populus trichocarpa]
gi|222833786|gb|EEE72263.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 41.2 bits (95), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
GD DMA ++ M + + P + +Y + FC+ G +++A ++ M HG YP
Sbjct: 179 GDVDMAKKLMGEMGLIDLYPDMITYVSMIKGFCDVGRLEEAFALFPVMSVHGCYPNVVAY 238
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST 494
ALL G +R + LL ++ P+
Sbjct: 239 SALLDGICRFGIVERAFELLAEMEKQGEGCCPNV 272
>gi|406699058|gb|EKD02277.1| PPR protein [Trichosporon asahii var. asahii CBS 8904]
Length = 1149
Score = 41.2 bits (95), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
GD D A + M G+ P + +Y +S F +GD A + E M+ G P+
Sbjct: 526 GDSDAAVRLFDEMIVNGVQPTVEAYTSLISAFAKHGDYVNADLMFEGMVRAGRTPDAITY 585
Query: 461 EALLRVSVEAGKGD 474
A++ ++EAG+ D
Sbjct: 586 SAVINAALEAGEWD 599
>gi|401889117|gb|EJT53057.1| hypothetical protein A1Q1_00064 [Trichosporon asahii var. asahii
CBS 2479]
Length = 1149
Score = 41.2 bits (95), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
GD D A + M G+ P + +Y +S F +GD A + E M+ G P+
Sbjct: 526 GDSDAAVRLFDEMIVNGVQPTVEAYTSLISAFAKHGDYVNADLMFEGMVRAGRTPDAITY 585
Query: 461 EALLRVSVEAGKGD 474
A++ ++EAG+ D
Sbjct: 586 SAVINAALEAGEWD 599
>gi|387191507|gb|AFJ68617.1| pentatricopeptide repeat-containing protein, partial
[Nannochloropsis gaditana CCMP526]
Length = 646
Score = 41.2 bits (95), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 17/165 (10%)
Query: 321 MKLNSQLLDGRSNLER------GPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEI 374
M ++ +L GR E PD + + Q ++ ++ E ++ + +RGF
Sbjct: 486 MIKSADVLQGRELFEEMCAAGITPDAVTYTTLMELYGQAGNKEQMEELVQQMSRKRGF-- 543
Query: 375 YEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434
P + + TAV R G A +++ MK+ + P + SYG A++
Sbjct: 544 ---------PRDVRAFTAVIRAYGRAGLWREALELLGTMKARNVKPTVVSYGTAMAALAA 594
Query: 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
+G +A + E M GV P + LE AG+ D+V L
Sbjct: 595 SGRHVEAFELLEAMKREGVEPNQVVLEWATEACRTAGRLDKVVQL 639
>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
Length = 817
Score = 41.2 bits (95), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 74/344 (21%), Positives = 134/344 (38%), Gaps = 49/344 (14%)
Query: 171 KVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYN 230
K++ D + K + F + L+ + +G ++ L+D +GI Y +N
Sbjct: 342 KIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFN 401
Query: 231 VLLYLCSSAAVGVV-KPAKSGSGMRT------LDTFEVSTMNSTELGDSRD-MDN-NGQL 281
VL+ + A G++ K + MR + T+ +G D M+ N +
Sbjct: 402 VLIK--AYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 459
Query: 282 DYGSSPMIDKLESNSSYR-FDDLDSTFNEKENLGQFSNGHMKLN----SQLLDGRSNLER 336
D G +P DK N + F S KE + + N M L+ S +++ L R
Sbjct: 460 DQGVAP--DKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR 517
Query: 337 GPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM 396
D Q+ D +++ + L DA Y + + CL VG+M
Sbjct: 518 VMDAQN-IFDLTVN------VGLHPDAVVYNM-----LMDGYCL------------VGKM 553
Query: 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456
+ A + M S GI P + YG ++ +C G +D+ S+ ML+ G+ P
Sbjct: 554 -------EKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPS 606
Query: 457 EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAK 500
++ EAG+ H++ S + T +++ +
Sbjct: 607 TILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLR 650
>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
Length = 735
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++V RM +G P L + ++ C NG V A + + M+E G P E +L+
Sbjct: 161 ALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLK 220
Query: 466 VSVEAGKGDRVYYLLHKL 483
V ++G+ LL K+
Sbjct: 221 VMCKSGQTALAMELLRKM 238
>gi|297843920|ref|XP_002889841.1| hypothetical protein ARALYDRAFT_888388 [Arabidopsis lyrata subsp.
lyrata]
gi|297335683|gb|EFH66100.1| hypothetical protein ARALYDRAFT_888388 [Arabidopsis lyrata subsp.
lyrata]
Length = 665
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%)
Query: 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
K + + E+ ++ + + M+ V + S G + A + +++MK+ G +P +
Sbjct: 216 KNGYPKAVELIGELPHNGIQMDSVMYGTVLAICASNGRCEEAENFIQQMKAEGHSPNIYH 275
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y L+ + GD KA + M G+ P + + LL+V ++ G DR LL +L
Sbjct: 276 YSSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSELE 335
Query: 485 TS 486
++
Sbjct: 336 SA 337
>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 704
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 62/125 (49%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
LS K+ + + + ++E+M D + S + ++ GD A ++ M G+
Sbjct: 536 LSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGL 595
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478
+P L +Y ++ F G +D+A S + M++ G P+ +++L+ + G+ D++
Sbjct: 596 SPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTE 655
Query: 479 LLHKL 483
L+ KL
Sbjct: 656 LVKKL 660
>gi|225464410|ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic [Vitis vinifera]
Length = 929
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
+K ++ EI ++M L + NE + T + S+GD AF+ ++K+ G+ +
Sbjct: 615 VEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDV 674
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHM 448
+Y L C +G + A +V M
Sbjct: 675 YTYEALLKACCKSGRMQSALAVTREM 700
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
F ++E + D + + + R MG+ D A VK M+ P R++ P +
Sbjct: 518 AFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIH 577
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV 490
F +GD+ +A + + M G P AL+ VE + ++ +L ++ S+ +
Sbjct: 578 GFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEM--SLAGI 635
Query: 491 SPS 493
SP+
Sbjct: 636 SPN 638
>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 4/129 (3%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G A +V M G+ P + +Y L C N VDKA ++ + + G+ P
Sbjct: 385 LGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYT 444
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSK----EAARLGKKKW 515
L+ + G+ + + + L ++ +T V+ F +K EA L K
Sbjct: 445 YTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMK 504
Query: 516 NESLIKDTM 524
+ S I D +
Sbjct: 505 DNSCIPDAV 513
>gi|296084463|emb|CBI25022.3| unnamed protein product [Vitis vinifera]
Length = 927
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
+K ++ EI ++M L + NE + T + S+GD AF+ ++K+ G+ +
Sbjct: 594 VEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDV 653
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHM 448
+Y L C +G + A +V M
Sbjct: 654 YTYEALLKACCKSGRMQSALAVTREM 679
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
F ++E + D + + + R MG+ D A VK M+ P R++ P +
Sbjct: 497 AFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIH 556
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV 490
F +GD+ +A + + M G P AL+ VE + ++ +L ++ S+ +
Sbjct: 557 GFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEM--SLAGI 614
Query: 491 SPS 493
SP+
Sbjct: 615 SPN 617
>gi|147845950|emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera]
Length = 790
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 39/91 (42%)
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
+E + T + RM +G D + + + M G P L +Y + NN VDK +
Sbjct: 326 DEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLF 385
Query: 446 EHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476
M+E+ P +L V V G+ R+
Sbjct: 386 SKMVENNCRPNGFTFSVILNVLVAEGQLGRL 416
>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
Length = 704
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 62/125 (49%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
LS K+ + + + ++E+M D + S + ++ GD A ++ M G+
Sbjct: 536 LSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGL 595
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478
+P L +Y ++ F G +D+A S + M++ G P+ +++L+ + G+ D++
Sbjct: 596 SPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTE 655
Query: 479 LLHKL 483
L+ KL
Sbjct: 656 LVKKL 660
>gi|224111364|ref|XP_002315827.1| predicted protein [Populus trichocarpa]
gi|222864867|gb|EEF01998.1| predicted protein [Populus trichocarpa]
Length = 472
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 360 SEDAKKYAFQRG-----------FEIYEKM----CLDEVPMNEASLTAVGRMAMSMGDGD 404
S AK YA G F++ E M CL +V ++ + S G D
Sbjct: 242 SPTAKTYAIMIGALVRNNRMDECFKLLEDMINSGCLPDV----STFKELIEGMCSAGKID 297
Query: 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
A+ ++ M + G P + +Y L V C N + ++A + E M+E G +P L+
Sbjct: 298 EAYRFLQEMGNKGYPPDIVTYNCFLKVLCENKNSEEALRLYERMIEAGCFPSVQTHNMLI 357
Query: 465 RVSVEAGKGDRVY 477
+ E G D +
Sbjct: 358 SMFFEMGDPDGAF 370
>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g13630-like [Vitis
vinifera]
Length = 829
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A+ +V+RM G+NP L +Y + C G+++++ ++E ML G+ LL
Sbjct: 359 AWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLS 418
Query: 466 VSVEAGKGDRVYYLLHKLRT 485
++G+ D LLH++
Sbjct: 419 SLCKSGRIDEAVILLHEMEV 438
Score = 40.0 bits (92), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 380 LDEVPMNEASLTAVGRMAMSMG---DGDM--AFDMVKRMKSLGINPRLRSYGPALSVFCN 434
LD + ++ T+V + G +GDM FDM+ M++ I P +Y + C
Sbjct: 573 LDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCK 632
Query: 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST 494
G + ++ + ++M G++P++ +++ +A + + L +++ + SP T
Sbjct: 633 EGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVT 692
Query: 495 ADV----IAKWFNSKEAARLGKKKWNESL 519
+V + + N K+A RL ++S+
Sbjct: 693 YNVLINGLCVYGNLKDADRLLVTLQDQSI 721
>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Glycine max]
Length = 746
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 58/139 (41%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
F R E++ +M + V N +L + G A + MK G+ +Y
Sbjct: 409 FDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTA 468
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
+S FC ++++A E ML G P+ +L+ AG+ + ++ KL+ +
Sbjct: 469 LISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAG 528
Query: 488 RKVSPSTADVIAKWFNSKE 506
+ S +V+ F K+
Sbjct: 529 FSLDRSCYNVLISGFCKKK 547
>gi|11079485|gb|AAG29197.1|AC078898_7 hypothetical protein [Arabidopsis thaliana]
Length = 441
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G A ++ K+M GI P Y + FC+ +D+A + EHMLE+G+ P
Sbjct: 274 GQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMPNVITY 333
Query: 461 EALLR 465
AL++
Sbjct: 334 NALIK 338
>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
Length = 747
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A +++ MK G+ P + SY LS FC + DVD+A V+ M+ G+ P+ +L++
Sbjct: 434 AIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQ 493
>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic [Vitis vinifera]
Length = 772
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++ +M G+ P +Y L+ FC GD+ KA + + M +G P+ L+
Sbjct: 545 AAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLIL 604
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTAD-VIAKWFNSK---EAARLGKK 513
+AG+ + LL ++ ++P T + VI F K EA RL ++
Sbjct: 605 GLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFRE 656
>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 504
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A D++ RM+ GI P +Y +S CN+G D A + M + +YP+ AL
Sbjct: 203 DNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNAL 262
Query: 464 LRVSVEAGK 472
+ V+ G+
Sbjct: 263 IDACVKEGR 271
>gi|145335386|ref|NP_172560.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242678|sp|Q0WVV0.1|PPR31_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g10910, chloroplastic; Flags: Precursor
gi|110741600|dbj|BAE98748.1| membrane-associated salt-inducible protein isolog [Arabidopsis
thaliana]
gi|332190541|gb|AEE28662.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 664
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%)
Query: 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
K + + E+ ++ + + M+ V + S G + A + +++MK G +P +
Sbjct: 215 KNGYPKAIELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVEGHSPNIYH 274
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y L+ + GD KA + M G+ P + + LL+V ++ G DR LL +L
Sbjct: 275 YSSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSELE 334
Query: 485 TS 486
++
Sbjct: 335 SA 336
>gi|393217309|gb|EJD02798.1| hypothetical protein FOMMEDRAFT_86064 [Fomitiporia mediterranea
MF3/22]
Length = 407
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 79/201 (39%), Gaps = 17/201 (8%)
Query: 282 DYGSSPMIDKLESNSSYR--FDDLDSTFNEKENLGQFSNGHM----KLNSQLLDGRSNLE 335
+Y SPM+D N + F LD K NL +S + K + +L+DG L
Sbjct: 152 EYHFSPMLDAFVKNQQLKEAFSVLDLMRQAKVNLTIYSADSILHAIKHDPELIDGAYALL 211
Query: 336 RGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMC-LDEVPMNEA--SLTA 392
+ K+ S + A + + A QR IY+ M L P E L
Sbjct: 212 -----EELHKEGSTVDVIAVNVLIKACAMLNDLQRAVGIYKTMSSLGVQPDAETYEMLLK 266
Query: 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452
R A + G+ F+ M+ G+NP RS+ +S+ D + A E M G
Sbjct: 267 ACRAARHVELGERLFN---EMREAGLNPTARSFERLISLVLTQTDYENAFFYLEEMKVSG 323
Query: 453 VYPEEPELEALLRVSVEAGKG 473
P P E +++ V A G
Sbjct: 324 HTPSYPTYEDIVKKCVSASDG 344
>gi|402224227|gb|EJU04290.1| hypothetical protein DACRYDRAFT_48637 [Dacryopinax sp. DJM-731 SS1]
Length = 421
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 12/126 (9%)
Query: 376 EKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435
E +CLD L GR G ++A +++ ++ G R P L F N
Sbjct: 157 EGLCLD-------VLHVAGRS----GRPELAMGVIRALRKNGAVFREHHLAPVLEAFLNA 205
Query: 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA-GKGDRVYYLLHKLRTSVRKVSPST 494
++ A V M H + PEE +LR V++ D +Y+L +L+ + + S
Sbjct: 206 NNLKDALHVLSLMRSHSISPEESTTMPILRRIVQSVDDVDNAFYILEELKNDGKPIDISA 265
Query: 495 ADVIAK 500
+VI +
Sbjct: 266 VNVIIR 271
>gi|356533985|ref|XP_003535538.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like, partial [Glycine max]
Length = 594
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A + + MK GI P + SY P + C +G D+A +LE G+ P+E +
Sbjct: 330 DKALKLWEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQAVDKLNELLEKGLVPDEVSCNII 389
Query: 464 LRVSVEAGKGDRVYYLLHKL 483
+ G D+ + +K+
Sbjct: 390 IHGYCWEGMVDKAFQFHNKM 409
>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 526
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 13/122 (10%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A MV +M +GI P + Y + C NG VD A S+ M +G+ P+ +L+
Sbjct: 160 AMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVN 219
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNS------KEAARLGKKKWNESL 519
+G+ LL + RK+ P DVI FN+ KE L K+ +
Sbjct: 220 GLCNSGRWRDADLLLRGMMK--RKIKP---DVIT--FNALIDAFVKEGKLLDAKELYNEM 272
Query: 520 IK 521
I+
Sbjct: 273 IQ 274
>gi|168012346|ref|XP_001758863.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690000|gb|EDQ76369.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 367
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLT----AVGRMAMSMGDGDMAFDMVKRMKSLGI 418
A+K F++ + +YE M + +E +L+ VG+ + + + F ++K GI
Sbjct: 56 ARKGLFKKAWRMYEDMVESGIQADEITLSTLLSGVGKTQLPVETAEKIFS---KIKENGI 112
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
PR+ +Y LSV G ++ +E M V P LL + V+ G+
Sbjct: 113 LPRVETYNTLLSVLSRGGHTERCKELEIEMQRLEVVPNIITFNTLLMMHVQGGR 166
>gi|9758456|dbj|BAB08985.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
Length = 949
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
++ EI ++M L V NE + T + + S+GD AF+ R+++ G++ + +Y
Sbjct: 638 RQAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEAL 697
Query: 429 LSVFCNNGDVDKACSVEEHM 448
L C +G + A +V + M
Sbjct: 698 LKACCKSGRMQSALAVTKEM 717
>gi|440800964|gb|ELR21990.1| pentatricopeptide repeat domain/PPR repeatcontaining protein
[Acanthamoeba castellanii str. Neff]
Length = 476
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433
+ ++M ++ M+E + + + + A +V+ + SLGI P + ++ ++ F
Sbjct: 137 VIQEMLQRKIKMDEHIMGNLIECFFKVNKQENALQVVEVLSSLGIVPSIATHNVIINQFV 196
Query: 434 NNGDVDKACSVEEHM-LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
+G D+A + + HGV P+E L++ S++ G+ D L L+ S
Sbjct: 197 KHGQFDQAFAYYAGLHARHGVKPDELTYTPLMQASIKRGRPDEAIELFDALKRS 250
>gi|357491823|ref|XP_003616199.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355517534|gb|AES99157.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 872
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448
SL V ++ +M + D A +++ MKS+GI P + Y + FC NGD K + E M
Sbjct: 393 SLRVVWKLICNMCELDEASQVLEEMKSIGILPDVYGYSILIDAFCKNGDDKKVVDLREDM 452
Query: 449 LEHGVYP 455
+ + P
Sbjct: 453 KLNQIKP 459
Score = 40.0 bits (92), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 50/97 (51%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
+S AK+ ++ +++ +M + N + TA+ + + D A D+ + M+ G+
Sbjct: 645 ISCFAKQTNSKKAVKLFTRMTKVGITFNIKTHTALIDLCIRNCKIDKACDLFEDMEKRGV 704
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
+P +Y ++ FCN G++ A ++ + ML+ G P
Sbjct: 705 HPDQITYNTLIAAFCNTGEMIIAKTLFDRMLQEGCSP 741
>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
Length = 722
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
M S GI+P + ++G + C +VD AC++ + M HG P + L+ + G+
Sbjct: 208 MLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGR 267
Query: 473 GDRV 476
+ V
Sbjct: 268 VNEV 271
>gi|449444614|ref|XP_004140069.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like [Cucumis sativus]
gi|449528063|ref|XP_004171026.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like [Cucumis sativus]
Length = 536
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 3/153 (1%)
Query: 368 FQRG---FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
F RG Y +M + N +L V +G D A + + M ++G +P + S
Sbjct: 216 FSRGDIALAFYREMRRSRIYPNSYTLNLVICACCKLGRLDKANVVFEEMGTMGFSPNVAS 275
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y ++ +CN G + A + M ++GV P+ L+ + GK L +++
Sbjct: 276 YNTLIAGYCNKGLLSSAMKLRSVMEKNGVPPDVVTFNTLVNGFCKVGKLQEASKLFGEMK 335
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE 517
+ T +++ ++ +G + + E
Sbjct: 336 GMSLSPTTVTYNILINGYSKAGNCEMGNRLFEE 368
>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa]
gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]
Length = 523
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G+ D A+ M + + S G+ P SY + +C ++ SV + M + + P
Sbjct: 266 GNVDEAYKMFREIGSHGVEPDACSYAIFIRAYCEANNIHSVFSVLDRMKRYDLVPNVFTY 325
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492
+++ + GK + Y LLH++ R VSP
Sbjct: 326 NCIIKKLCKNGKVEDAYQLLHEMME--RGVSP 355
>gi|334183970|ref|NP_177858.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332197845|gb|AEE35966.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 402
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G A ++ K+M GI P Y + FC+ +D+A + EHMLE+G+ P
Sbjct: 274 GQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMPNVITY 333
Query: 461 EALLR 465
AL++
Sbjct: 334 NALIK 338
Score = 39.3 bits (90), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 66/157 (42%), Gaps = 3/157 (1%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
F+++++M + NE S T + D A ++ +MK P +R+Y +
Sbjct: 209 AFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLID 268
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV 490
C +G +A ++ + M E G+ P++ L++ D LL + +
Sbjct: 269 ALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMP 328
Query: 491 SPSTADVIAKWF---NSKEAARLGKKKWNESLIKDTM 524
+ T + + K F N +A L K ++L+ D +
Sbjct: 329 NVITYNALIKGFCKKNVHKAMGLLSKMLEQNLVPDLI 365
>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
Length = 797
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%)
Query: 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443
P N S V + G D A+++ M GI P + +Y + C VD+A
Sbjct: 200 PPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEG 259
Query: 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
V + M++ GV P+ L+ + GK V +L ++
Sbjct: 260 VFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEM 299
>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
Length = 799
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468
++ M+ +G+ P SY P +S +C G D+A V + M+ G+ P E LL
Sbjct: 501 LIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYC 560
Query: 469 EAGKGDRVYYLLHK-LRTSVRKVSPSTADVIAKWFNSK 505
A + D Y L + LR V + ++ F +K
Sbjct: 561 SASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTK 598
>gi|357457245|ref|XP_003598903.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487951|gb|AES69154.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 767
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
+AFD++K + S G L Y + CN V+KA + + ++ G+ P+ ++ LL
Sbjct: 383 LAFDLLKDLVSSGYRADLGMYNNLIEGLCNLNKVEKAYKLFQVTIQEGLEPDFLSVKPLL 442
Query: 465 RVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFN 503
EA + + + LL K+ +K+ D ++K+F+
Sbjct: 443 LAYAEAKRMEEFFMLLEKM----KKLGFPVIDDLSKFFS 477
>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
Length = 577
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468
++ M +L INP + ++ + C G V+ A V HM+E GV P+ A++
Sbjct: 260 LLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYC 319
Query: 469 EAGKGDRVYYLLHKLR 484
G+ DR + + LR
Sbjct: 320 LRGQVDRARRVFNVLR 335
>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Vitis vinifera]
Length = 858
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 22/197 (11%)
Query: 327 LLDGRSNLERGPD-----DQSRKKD---WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM 378
++D + ER D D + ++D W+ ++ LS +A K +Q F
Sbjct: 425 IIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQF------ 478
Query: 379 CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438
D VP N S +V + G + A DM +M+SLG P L ++ +S +G
Sbjct: 479 --DSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFG 536
Query: 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEA-----GKGDRVYYLLHKLRTSVRKVSPS 493
+A + M E G+ P + ++L + G+ + H+ SV V+ S
Sbjct: 537 YEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSV-PVATS 595
Query: 494 TADVIAKWFNSKEAARL 510
D+ AK + EA ++
Sbjct: 596 LVDMYAKCGSIDEAKKV 612
>gi|255572062|ref|XP_002526972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533724|gb|EEF35459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 510
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 9/161 (5%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
E+Y+ M LD V + + ++ + AF +MK++G+ P + Y +S
Sbjct: 104 EVYDDMMLDGVQPSRETFYSLIVGTLKGARLSDAFFFRDQMKAMGLLPDVSLYNFLISTC 163
Query: 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492
+ D+A + E M + V P LL AG+ DRVY + VR ++
Sbjct: 164 GKCKNSDQAVQILEEMKINEVKPNGQTYVCLLNACAAAGRLDRVYAI-------VRDMTA 216
Query: 493 STADVIAKWFNSKEAARLGKKKWNESLIKDTME--NKGGGW 531
+ A + + AA + KK ++ K +E + GW
Sbjct: 217 AGAGLNKFCYAGLIAAHMNKKPLSDDTAKRIIELVEQSKGW 257
>gi|357445509|ref|XP_003593032.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482080|gb|AES63283.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 627
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
+ + E+ +++ +++ M++ A+ + S G + A +MKS G +P + Y
Sbjct: 190 YPKALELIQELQDNKLRMDDVIYGAILAVCASNGKWEEAEYYFNQMKSEGRSPNVYHYSS 249
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485
L+ + GD KA ++ + M G+ P + L LL+V V G ++ LL KL +
Sbjct: 250 LLNAYSACGDFTKADALIQDMESEGLAPNKVILTTLLKVYVRGGLFEKSRELLAKLES 307
>gi|297796453|ref|XP_002866111.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311946|gb|EFH42370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 829
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 6/160 (3%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
G ++ M L+ VP N + + + G+ D A DM +M+S GI P L S+ ++
Sbjct: 460 GLRLFYGMQLEGVPPNVITWNLIILSLLRNGEVDEAKDMFLQMQSSGIFPNLISWTTMMN 519
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR-----VSVEAGKGDRVYYLLHKLRT 485
NG ++A M E G+ P + L S+ G+ Y + + +
Sbjct: 520 GMVQNGCSEEAILFLRKMQESGLRPNAVSITVALSACANLASLHFGRSIHGYIIRNLQHS 579
Query: 486 SVRKVSPSTADVIAKWFNSKEAARL-GKKKWNESLIKDTM 524
S + S D+ AK + +A ++ G K ++E + + M
Sbjct: 580 SSVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLYNAM 619
>gi|7413543|emb|CAB86023.1| putative protein [Arabidopsis thaliana]
Length = 880
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
++ EI ++M L V NE + T + + S+GD AF+ R+++ G++ + +Y
Sbjct: 638 RQAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEAL 697
Query: 429 LSVFCNNGDVDKACSVEEHM 448
L C +G + A +V + M
Sbjct: 698 LKACCKSGRMQSALAVTKEM 717
>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
Length = 845
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 12/178 (6%)
Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDD-----QSRKKDWSIDNQDADEI---RLSED 362
E G+ M + + L+ G N ERG + + ++ W + + R E
Sbjct: 244 ELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRER 303
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
K A + E++EK V + TAV G A +++ MK G P +
Sbjct: 304 KAKEAEEMLQEMFEKGLAPCV----VTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNV 359
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480
+Y + FCN G V KA ++ M GV P+ L+R G + + LL
Sbjct: 360 WTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLL 417
Score = 39.3 bits (90), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + AF +++ M+ G+ +Y ++ C +G D+ACS+ + + G+ P
Sbjct: 408 GHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTF 467
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTS 486
+L+ ++GK D + L K+ ++
Sbjct: 468 NSLINGLCKSGKADIAWKFLEKMVSA 493
>gi|359489475|ref|XP_002267721.2| PREDICTED: conserved oligomeric Golgi complex subunit 4-like [Vitis
vinifera]
Length = 1105
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456
AFD+ K G++P +SY +S FC NGD+ A ++ M + V P+
Sbjct: 168 AFDLFKSAHRYGVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPD 218
>gi|357506483|ref|XP_003623530.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498545|gb|AES79748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 653
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450
T +G + MS GD A ++K M+ G+ L +Y L G++ +AC + E MLE
Sbjct: 365 TLLGALCMS-GDLGKAKRVMKEMRLKGVELNLHTYRIMLDGLVGKGEIGEACVLLEEMLE 423
Query: 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
YP ++++ + G L++K+
Sbjct: 424 KCFYPRSSTFDSIVHQMCQKGLISDALVLMNKI 456
>gi|348574650|ref|XP_003473103.1| PREDICTED: LOW QUALITY PROTEIN: leucine-rich PPR motif-containing
protein, mitochondrial-like [Cavia porcellus]
Length = 1395
Score = 40.8 bits (94), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
+I E M ++P+ EA +A+ GD + A +++ M+ GI P +Y L+ +
Sbjct: 223 KILEFMKTKDLPVTEAVFSALVTGHAKAGDMENAENILIVMRQAGIEPGPDTYLALLNAY 282
Query: 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492
GD+D + E + + +Y + +L L+ +AG V +L K T R+ P
Sbjct: 283 AEKGDIDHVKEILEKVQKSDLYLMDRDLLQLVFSFSKAGYPQYVSEILEKF-TYERRYIP 341
Query: 493 STADVIAKWFNSK 505
++I K
Sbjct: 342 DAINLILLLVTEK 354
>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 40.8 bits (94), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++V RM +G P L + ++ C NG V A + + M+E G P E +L+
Sbjct: 161 ALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLK 220
Query: 466 VSVEAGKGDRVYYLLHKL 483
V ++G+ LL K+
Sbjct: 221 VMCKSGQTALAMELLRKM 238
>gi|356524760|ref|XP_003530996.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
mitochondrial-like [Glycine max]
Length = 381
Score = 40.8 bits (94), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 14/151 (9%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMG-----DGDMAFDMVKRMKS-LGINPRLRS 424
G + + DE+P S T + A+ D+ ++ + + + L I P L +
Sbjct: 107 GMTKHARKVFDEMPQRNCSRTVLSLNALLAAYLHSRKYDIVGELFRDLPTQLSIKPDLVT 166
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK---GDRVYYLLH 481
Y + FC G D A SV + + E G+ P+ LL G+ G++V+
Sbjct: 167 YNTIIKAFCEKGSFDSALSVFQEIEEKGLSPDSITFNTLLDGLYSKGRFEEGEKVWE--- 223
Query: 482 KLRTSVRKVSPSTADVIAKWFNSKEAARLGK 512
+ V+ V+P +K E ++G+
Sbjct: 224 --QMGVKNVAPGVRSYCSKLVGLAEVKKMGE 252
>gi|357509511|ref|XP_003625044.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500059|gb|AES81262.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 521
Score = 40.8 bits (94), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433
Y +M + + N ++ V +G+ + A +++++MK +G+ P + ++ +S +C
Sbjct: 207 FYRQMRRNRISPNVYTINMVVSAYCKLGELNKASEVLEKMKDMGLCPNVVTFNSLISGYC 266
Query: 434 NNGDVDKACSVEEHML-EHGVYPEEPELEALLRVSVEAGK---GDRVY 477
+ G + A V + M+ ++GV+P L+ + GK +RV+
Sbjct: 267 DKGLLGLALKVRDLMMGKNGVFPNVVTFNTLINGFCKEGKLHEANRVF 314
>gi|334184699|ref|NP_001189682.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330253975|gb|AEC09069.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 613
Score = 40.8 bits (94), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451
A GR + D + F+ MK LGI P ++S+ LS + DV K ++ + M E+
Sbjct: 400 AYGRAGLH-SDAEAVFE---EMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSEN 455
Query: 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497
GV P+ L ++L + G+ ++ +L ++ P TAD+
Sbjct: 456 GVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMEN-----GPCTADI 496
>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
Length = 543
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + A +++ M GI P + +Y + +FC N +++A ++ M+E GV P+
Sbjct: 327 GRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISY 386
Query: 461 EALLRVSVEAGKGDRVYYLL 480
L +++ + D + LL
Sbjct: 387 CTLAVALLKSERFDEAFALL 406
Score = 39.7 bits (91), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
K Y + ++ E M +V N + + G +A +++RM G +P +
Sbjct: 219 CKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDV 278
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVY-PEEPELEALLRVSVEAGKGDRVYYLLH 481
++ +S FC +DKAC V H+++ G+ P L+ +AG+ + LL
Sbjct: 279 VTFNSLISGFCQKSKIDKACEV-LHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLS 337
Query: 482 KL 483
++
Sbjct: 338 EM 339
>gi|297826989|ref|XP_002881377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327216|gb|EFH57636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 589
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451
A GR + D + F+ MK LGI P ++S+ LS + DV K ++ + M E+
Sbjct: 376 AYGRAGLH-SDAEAVFE---EMKRLGIAPTMKSHMLLLSAYSRARDVTKCEAIVKEMSEN 431
Query: 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497
GV P+ L ++L + G+ ++ +L ++ P TAD+
Sbjct: 432 GVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMEN-----GPCTADI 472
>gi|15226907|ref|NP_181058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100538|sp|O82178.1|PP186_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g35130
gi|3668091|gb|AAC61823.1| hypothetical protein [Arabidopsis thaliana]
gi|330253974|gb|AEC09068.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 591
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451
A GR + D + F+ MK LGI P ++S+ LS + DV K ++ + M E+
Sbjct: 378 AYGRAGLH-SDAEAVFE---EMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSEN 433
Query: 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497
GV P+ L ++L + G+ ++ +L ++ P TAD+
Sbjct: 434 GVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMEN-----GPCTADI 474
>gi|357125724|ref|XP_003564540.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic-like [Brachypodium distachyon]
Length = 652
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468
+V+ M++ GI P +Y LS++ G +D+A + E +LE G +P L + V+
Sbjct: 394 LVRDMQANGIQPNAVTYSTILSIWVKAGKLDRAAKLFEKLLESGT-EIDPVLYQTMVVAY 452
Query: 469 E-AGKGDRVYYLLHKLRTSVRKVSPSTA-DVIAKWFNSKEAARLGKKKWNESLIKD 522
E AG + LL +L+ + TA ++A +EAA L ++ N ++D
Sbjct: 453 ERAGLVSQAKRLLRELKDPAEGIPTETAISILANAGRVEEAAWLFRRAVNTGEVRD 508
>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D A D+ M LG P + +Y +S G +D+A + M +HG P+
Sbjct: 486 GRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSY 545
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNS----KEAARLGKK 513
+L + G DR +L ++ S K + + + + +EAA+L K+
Sbjct: 546 NIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKE 602
>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 451
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
+ ++ RM+SL I P +++ + ++G DKA + +M EHG + + +L
Sbjct: 108 VWSLIHRMRSLRIGPSPKTFAIVAERYASSGKPDKAVKLFLNMHEHGCFQDLASFNTILD 167
Query: 466 VSVEAGKGDRVYYLLHKLR 484
V ++ + ++ Y L LR
Sbjct: 168 VLCKSKRVEKAYELFRALR 186
>gi|297817780|ref|XP_002876773.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322611|gb|EFH53032.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 559
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
KK QR +Y +M D V N T + GD D A + +M + G+ +
Sbjct: 244 CKKGEMQRAGGMYLRMLEDRVEPNSLVYTTIINGFFQRGDSDNAMKFLAKMLNQGMRLDI 303
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
+YG +S C G + +A + E M + + P+ ++ ++G+ + HK
Sbjct: 304 TAYGVIISGLCGIGKLKEATEIVEDMEKGDLVPDMMIFTTMMNAYFKSGRMKAAVNMYHK 363
Query: 483 L 483
L
Sbjct: 364 L 364
>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A +++ MK G NP + +Y ++ FC G +++A V + M G+ P+ L
Sbjct: 289 DRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTL 348
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVI 498
+ AG+ D LL +R + + T +VI
Sbjct: 349 INFFCRAGRVDEAMELLKDMRENKCRADTVTFNVI 383
>gi|15228936|ref|NP_188942.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273922|sp|Q9LS88.1|PP250_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g23020
gi|9294191|dbj|BAB02093.1| unnamed protein product [Arabidopsis thaliana]
gi|332643185|gb|AEE76706.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 842
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%)
Query: 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451
AV + +G +MA ++ K M I P + YG ++ F + G+V +A S E M E
Sbjct: 580 AVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEA 639
Query: 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489
G+ +L+++ + G D + KL S K
Sbjct: 640 GIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNK 677
>gi|449458656|ref|XP_004147063.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
chloroplastic-like [Cucumis sativus]
Length = 1108
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
A R F++ +M + P+ +T A+ + + G D A ++ K + I
Sbjct: 605 AVDRAFDVLAEMGAELHPIEPDHITIGALMKACANAGQVDRAREVYKMIHDYKIKGTPEV 664
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y A++ + D D A ++ + M GV P+E L AL+ V+ AGK D + +L + +
Sbjct: 665 YTIAVNCCSQSCDWDFASNIYQDMTRKGVQPDEIFLSALIDVAGHAGKLDAAFEVLGEAK 724
Query: 485 T 485
T
Sbjct: 725 T 725
>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
Length = 742
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 55/130 (42%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
KK + E++++M L + N + + D AF ++ +M S G+ P
Sbjct: 472 CKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNN 531
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
+Y L+ +C GD+ KA + E M +G + L+ +AG+ +L
Sbjct: 532 ITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRG 591
Query: 483 LRTSVRKVSP 492
+R + +P
Sbjct: 592 MRIKGMRPTP 601
>gi|50582688|gb|AAT78758.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|108709716|gb|ABF97511.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1025
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 58/140 (41%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
Q+ +EI M + A+ +GD D AF++ + MK+LG+ P +
Sbjct: 787 LQQSYEILHDMVESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESS 846
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
+ C G V++A V ++ G+ P L+ + K D ++L + +
Sbjct: 847 IVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCG 906
Query: 488 RKVSPSTADVIAKWFNSKEA 507
KV T +V+ +K+
Sbjct: 907 LKVDVVTYNVLITGLCNKKC 926
>gi|255082023|ref|XP_002508230.1| predicted protein [Micromonas sp. RCC299]
gi|226523506|gb|ACO69488.1| predicted protein [Micromonas sp. RCC299]
Length = 261
Score = 40.8 bits (94), Expect = 3.2, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSV---FCNNG----DVDK---ACSVEEHMLE 450
GD + AF+ +MK+ G++P + ++G L+ F ++G DVD A ++ M E
Sbjct: 71 GDPNAAFETYGKMKAAGVSPTVVTFGCLLNACRHFASSGAGESDVDPAELAYALLSEMSE 130
Query: 451 HGVYPEEPELEALLRVSVEAGKGD 474
GV P + AL+RV EAG+ D
Sbjct: 131 RGVVPNDRCQNALVRVVSEAGRID 154
>gi|255540497|ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550428|gb|EEF51915.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 627
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV 444
+++A + R S+G+ D A M+K M++ G P +Y + C +++AC V
Sbjct: 368 LSKAVYDGIHRSLTSIGNFDEAAKMMKCMQTAGYEPDNITYSQLVFGLCKARRLEEACEV 427
Query: 445 EEHMLEHGVYPEEPELEALLR---VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKW 501
+ M HG P+ L++ V+ E GK L L + K AD++A
Sbjct: 428 LDEMEAHGCLPDIKTWTILIQGHCVANEVGKA------LMCLAKMMEKHCDPDADLLAVL 481
Query: 502 FNS 504
N+
Sbjct: 482 INA 484
>gi|414881814|tpg|DAA58945.1| TPA: hypothetical protein ZEAMMB73_003881 [Zea mays]
Length = 792
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 47/95 (49%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
E+Y +M + V ++ + TA+ GD D A ++ M+ L ++P + +Y ++
Sbjct: 694 ALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLIN 753
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
+G + +A + + ML GV P++ + L R
Sbjct: 754 ACVRDGKLQEAFQLHDEMLSSGVVPDDTTYDILPR 788
Score = 39.7 bits (91), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++ +MK G+ P + +Y L +C G +D+A + M + G P E L++
Sbjct: 414 AVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMK 473
Query: 466 VSVEAGKGDRVYYLLHKLR 484
++ D Y LL+++R
Sbjct: 474 GYIKKKAFDNAYALLNEMR 492
>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
Length = 734
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%)
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
N S T + R + D A +++ M+S G+ + +YG + C+ +VDKA +
Sbjct: 114 NAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELM 173
Query: 446 EHMLEHGVYPEEPELEALLRVSVEAGK 472
M E G+ P +LL+ ++G+
Sbjct: 174 GEMCESGIEPNVVVYSSLLQGYCKSGR 200
>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 566
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 10/162 (6%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
++GFE+YEKM D V N + V G AF + M+ G++ + +Y
Sbjct: 250 KQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTL 309
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
+ C +++A V + M G+ P L+ GK + L L++ R
Sbjct: 310 IGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKS--R 367
Query: 489 KVSPS--TADVIAKWFNSKEAARLGKKKWNESLIKDTMENKG 528
+SPS T +++ F R G ++K+ ME +G
Sbjct: 368 GLSPSLVTYNILVSGF-----CRKGDTSGAAKMVKE-MEERG 403
Score = 39.3 bits (90), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A + M+ LG+ P + +Y + FC G +++A + + M+E P E ++
Sbjct: 427 AIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMIL 486
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTA------DVIAKWFNSKEAARLGKK 513
+ G R LL ++ ++++P+ A +V+ K SKEA RL +K
Sbjct: 487 GYCKEGSSYRALKLLKEMEE--KELAPNVASYRYMIEVLCKERKSKEAERLVEK 538
>gi|413943231|gb|AFW75880.1| hypothetical protein ZEAMMB73_724096 [Zea mays]
Length = 702
Score = 40.8 bits (94), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 102/251 (40%), Gaps = 52/251 (20%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL-L 464
A D+ K+M G+ P + SYG LS D+A V EHM G+ EP L A +
Sbjct: 474 AVDVFKKMVERGLKPDVVSYGALLSALEKGRLYDEALRVWEHMRRLGI---EPNLYAYTI 530
Query: 465 RVSVEAGKGDRVY--YLLHKLRTSVRKVSPSTADVIA---------------KWFN---- 503
S+ GKGD +LH + + ++++P+ A +WF+
Sbjct: 531 LASIYIGKGDHAMADAVLHDMLS--KRIAPTVVTFNAIISACARSGSGGNAFEWFHRMKM 588
Query: 504 -SKEAARLGKKKWNESLIKD-------TMENKGGGWHGLGWLGKGKWIVSHTTVGGDALC 555
E + + E+L++D M K G GL K S+ TV C
Sbjct: 589 KGIEPNEITYQVLIEALVQDGKPRLAYEMYMKACG-QGLQLPAK-----SYDTV--LEAC 640
Query: 556 KCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVG 615
+ G + + L P ++ V I I+ +SF +F ++ D +G A VG
Sbjct: 641 RAYGSVVDVATLGPRPSKGV--EVEPIRIE----NSFSRFSQFKDVHGSSHRF---AGVG 691
Query: 616 LYSQRNFKPAR 626
+Y ++ AR
Sbjct: 692 MYGFYGYRMAR 702
>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Cucumis sativus]
Length = 481
Score = 40.8 bits (94), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Query: 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMK 414
+ + L + K Y F+ FE Y ++ +D L G++ ++A++ K++
Sbjct: 359 EAMELFNELKSYNFKLDFESYSRL-ID-------GLCKAGKV-------EIAWEFFKQLS 403
Query: 415 SLGINPRLRSYGPALSVFCNNGDVDKACSV---EEHMLEHGVYPEEPELEALLRVSVEAG 471
G+ P + + + FC VDKA + E M E+G P+ LLR E+
Sbjct: 404 QEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESN 463
Query: 472 KGDRVYYLLHKLRTSVR 488
K + V LLHK+ +R
Sbjct: 464 KLEEVVNLLHKMFKRMR 480
>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 822
Score = 40.8 bits (94), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G + AF ++ M S+GI P + +Y L +C NG +D + ML GV P
Sbjct: 556 VGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTIT 615
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVI 498
+L G+ + H++ S + ST +I
Sbjct: 616 YGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGII 654
>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1246
Score = 40.8 bits (94), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 4/130 (3%)
Query: 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEH 447
A + A+GR GD ++++ MKS+G+ P + +Y + +D A + +
Sbjct: 240 ALMVALGRR----GDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKE 295
Query: 448 MLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEA 507
M + G P+ L+ AGK D+ L K+R S T + F
Sbjct: 296 MDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGD 355
Query: 508 ARLGKKKWNE 517
K+ WNE
Sbjct: 356 LETVKRFWNE 365
>gi|330999805|ref|ZP_08323510.1| Tat pathway signal sequence domain protein [Parasutterella
excrementihominis YIT 11859]
gi|329573808|gb|EGG55397.1| Tat pathway signal sequence domain protein [Parasutterella
excrementihominis YIT 11859]
Length = 735
Score = 40.8 bits (94), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Query: 535 GWLGKG--KWIVSHTTVGGDALCKCC-GEKLAIIDLDPIETEKFAESVASIAIKRERNSS 591
W+ G K++++H + D L CC G AI ++ ++ + I+R +
Sbjct: 267 AWVATGVMKYLIAHDMIDHDFLKNCCIGADQAIAKVNSVDWKD---------IERVTGLT 317
Query: 592 FQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVN---AVVNGIRQKFPSKKWPLIVL 648
++ +++ D YG E ++ A G+ QRN+ AR+ A++ +R F +I
Sbjct: 318 QKQIEEFADVYGHAERIIIRAGYGM--QRNYNGARMTRAIAIMQAMRGMFDKPSCGIIYD 375
Query: 649 HNRRITGHKMD 659
+ R ITG ++
Sbjct: 376 NVRPITGMNLN 386
>gi|414881815|tpg|DAA58946.1| TPA: hypothetical protein ZEAMMB73_360564 [Zea mays]
Length = 792
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 47/95 (49%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
E+Y +M + V ++ + TA+ GD D A ++ M+ L ++P + +Y ++
Sbjct: 694 ALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLIN 753
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
+G + +A + + ML GV P++ + L R
Sbjct: 754 ACVRDGKLQEAFQLHDEMLSSGVVPDDTTYDILPR 788
Score = 39.7 bits (91), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++ +MK G+ P + +Y L +C G +D+A + M + G P E L++
Sbjct: 414 AVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMK 473
Query: 466 VSVEAGKGDRVYYLLHKLR 484
++ D Y LL+++R
Sbjct: 474 GYIKKKAFDNAYALLNEMR 492
>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 600
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 6/123 (4%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A +++ M+ G+ P + +YG + C+ DVD A + M E G+ P LL
Sbjct: 113 AVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLH 172
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTME 525
+ G+ + V + ++ S R + P DV+ R GK K + + D M
Sbjct: 173 GYCKTGRWESVGKVFEEM--SGRGIEP---DVVMYTALIDSLCRHGKVK-KAARVMDMMT 226
Query: 526 NKG 528
+G
Sbjct: 227 ERG 229
>gi|297805706|ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316573|gb|EFH46996.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 680
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/156 (17%), Positives = 70/156 (44%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
F ++ M ++ N + + ++ + + A ++V+ M+S GI P +Y
Sbjct: 383 FGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYST 442
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
+S++ G +D+A ++ + + GV ++ + ++ G LLH+L+
Sbjct: 443 IISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPD 502
Query: 488 RKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDT 523
+ ++AK +++EA + ++ + +KD
Sbjct: 503 NIPRETAITILAKAGSTEEATWVFRQAFESGEVKDI 538
>gi|255586885|ref|XP_002534048.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525928|gb|EEF28334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1129
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
A R F++ +M + P++ +T A+ + G D A ++ + I
Sbjct: 626 AVDRAFDVLAEMGAETHPIDPDHITVGALMKACAKAGQVDRAKEVYNMLHKYNIKGTPEV 685
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y A++ GD + A SV + M GV P+E L AL+ V+ AG D + L + R
Sbjct: 686 YTIAVNFCSQTGDWEFARSVYDDMTRKGVAPDEMFLSALVDVAGHAGLVDIAFETLQEAR 745
Query: 485 T 485
T
Sbjct: 746 T 746
>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
Length = 987
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++ +M+ GI P + +Y + C + D A + E M ++G+ P+E L
Sbjct: 512 AMALITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTD 571
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVS-PSTADVIAKWFNSKEAARLGKKKWNESLIKD 522
++G+ + Y L + + KV+ S D +K N+ AA L +K NE D
Sbjct: 572 ALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKAD 629
>gi|413943230|gb|AFW75879.1| hypothetical protein ZEAMMB73_724096 [Zea mays]
Length = 665
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL-L 464
A D+ K+M G+ P + SYG LS D+A V EHM G+ EP L A +
Sbjct: 437 AVDVFKKMVERGLKPDVVSYGALLSALEKGRLYDEALRVWEHMRRLGI---EPNLYAYTI 493
Query: 465 RVSVEAGKGDRVY--YLLHKLRTSVRKVSPSTA 495
S+ GKGD +LH + + ++++P+
Sbjct: 494 LASIYIGKGDHAMADAVLHDMLS--KRIAPTVV 524
Score = 40.0 bits (92), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 87/223 (39%), Gaps = 27/223 (12%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A + + M+ LGI P L +Y S++ GD A +V ML + P A+
Sbjct: 470 DEALRVWEHMRRLGIEPNLYAYTILASIYIGKGDHAMADAVLHDMLSKRIAPTVVTFNAI 529
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDT 523
+ +G G + H+++ + + T V+ + RL +
Sbjct: 530 ISACARSGSGGNAFEWFHRMKMKGIEPNEITYQVLIEALVQDGKPRLAYE---------- 579
Query: 524 MENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIA 583
M K G GL K S+ TV C+ G + + L P ++ V I
Sbjct: 580 MYMKACG-QGLQLPAK-----SYDTV--LEACRAYGSVVDVATLGPRPSKGV--EVEPIR 629
Query: 584 IKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPAR 626
I+ +SF +F ++ D +G A VG+Y ++ AR
Sbjct: 630 IE----NSFSRFSQFKDVHGSSHRF---AGVGMYGFYGYRMAR 665
>gi|242084242|ref|XP_002442546.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
gi|241943239|gb|EES16384.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
Length = 735
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453
GRMA A +++ M S G P + +Y + FC G++D+A + +HM ++G
Sbjct: 350 GRMAE-------AKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGC 402
Query: 454 YPEEPELEALLRVSVEAGKGDRVYYLLHK 482
P ALL + GK + LL+K
Sbjct: 403 KPNTVTHTALLNGLCKVGKSSEAWELLNK 431
>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 927
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
E+YEKM L V + ++ + R + + + A KS G+ +Y + F
Sbjct: 230 EVYEKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAF 289
Query: 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471
C N DV+ AC + + M + G P E +++ V+ G
Sbjct: 290 CKNLDVELACGLLKDMRDKGWVPSEGTFTSVIGACVKQG 328
>gi|15240478|ref|NP_198079.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635757|sp|O04647.2|PP399_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g27270; AltName: Full=Protein EMBRYO DEFECTIVE 976
gi|332006282|gb|AED93665.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1038
Score = 40.4 bits (93), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
LS KK + +++ +M + VP NE + T V G + A MKSLG
Sbjct: 265 LSSLQKKSFHGKVIDLWLEMVEEGVPPNEFTYTLVVSSYAKQGFKEEALKAFGEMKSLGF 324
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
P +Y +S+ GD +KA + E M G+ P
Sbjct: 325 VPEEVTYSSVISLSVKAGDWEKAIGLYEDMRSQGIVP 361
>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 924
Score = 40.4 bits (93), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
F I+E + D + + + R MG D A MVK M+ P R++ P +
Sbjct: 535 AFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIH 594
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV 490
F G++ +A V + M G P AL+ VE + ++ +L ++ ++ V
Sbjct: 595 GFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEM--ALAGV 652
Query: 491 SPS 493
SP+
Sbjct: 653 SPN 655
Score = 39.7 bits (91), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
+K ++ EI ++M L V NE + T + ++GD AF+ +++ G+ +
Sbjct: 632 VEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDV 691
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHM 448
+Y L C +G + A +V + M
Sbjct: 692 YTYEALLKACCKSGRMQSALAVTKEM 717
>gi|224102411|ref|XP_002312667.1| predicted protein [Populus trichocarpa]
gi|222852487|gb|EEE90034.1| predicted protein [Populus trichocarpa]
Length = 512
Score = 40.4 bits (93), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 48/96 (50%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+R ++++E+M + + + T + + + G+ DMA ++ M +G+ P Y
Sbjct: 342 RRAYKLFEEMGRKGIAPDVVTFTILIKAFLREGNSDMAKKLLDLMAGMGLLPDRIFYTTI 401
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464
+ C +G V+ A S+ M+E G+ P+ AL+
Sbjct: 402 IDHHCKSGKVEMAHSIFCDMVEKGITPDVVSYNALI 437
>gi|255661210|gb|ACU25774.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 426
Score = 40.4 bits (93), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 60/140 (42%)
Query: 376 EKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435
+KM D VP + + + ++ + D A + R+K GI P L +Y ++VF
Sbjct: 33 QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRAGITPDLVAYNSMINVFGKA 92
Query: 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495
+A S+ M E GV P+ LL + VE K + ++R V +T
Sbjct: 93 KLFREARSLISEMREAGVVPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCLVDLTTC 152
Query: 496 DVIAKWFNSKEAARLGKKKW 515
+++ + + A+ K +
Sbjct: 153 NIMIDVYGQLDMAKEADKLF 172
>gi|242096916|ref|XP_002438948.1| hypothetical protein SORBIDRAFT_10g028800 [Sorghum bicolor]
gi|241917171|gb|EER90315.1| hypothetical protein SORBIDRAFT_10g028800 [Sorghum bicolor]
Length = 678
Score = 40.4 bits (93), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461
+ A D+ K+M G+ P + SYG LS D+A V EHM + G+ P
Sbjct: 448 EASAAVDIFKKMVDEGLKPDVVSYGALLSALEKGKLYDEALRVWEHMCKVGIKPNLYAYT 507
Query: 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495
L+ + + G V +LH + + +++ P+
Sbjct: 508 ILVSIYIGKGNHAMVDAVLHDMVS--KQIEPTVV 539
>gi|384253709|gb|EIE27183.1| hypothetical protein COCSUDRAFT_38919 [Coccomyxa subellipsoidea
C-169]
Length = 675
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 403 GDMAFDMVKRMKSLGINPRLRSYGPALSVF-------CNNGDVDKACSVEEHMLEHGVYP 455
G+ A D+ + MK LG+ P L +Y A+ + +D+A + M GV P
Sbjct: 371 GERALDIYRSMKDLGVEPDLVTYNLAVRACGGQSGSKLRSAQLDQAFQLLADMRAAGVAP 430
Query: 456 EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
++ + ++L + +AG G R L +++ S
Sbjct: 431 DQQTVTSMLALCAQAGAGRRALALYEEVKDS 461
>gi|357115900|ref|XP_003559723.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like, partial [Brachypodium distachyon]
Length = 907
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 408 DMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467
D+ M + G++P +YG ++ +C G++ AC + M+E G+ P L+
Sbjct: 536 DIRVEMSAKGLSPNTVTYGALIAGWCKEGNLHDACILYFEMVEKGLKPNLFICSVLVSCF 595
Query: 468 VEAGKGDRVYYLLHKLRTS--VRKVSPSTADV 497
GK D +L KL + ++ S ST ++
Sbjct: 596 YREGKVDEANLVLQKLADTDMIQDCSASTLNI 627
>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 712
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 402 DGDM--AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457
DG + A +M+ G P +YG +S CN +D+AC + E M+++G+ P E
Sbjct: 557 DGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQLYETMIDNGLSPCE 614
>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
Length = 721
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 51/112 (45%)
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
SE+ K + Y +M V +N+ +++ R +G + A+++++ M S G
Sbjct: 160 SEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFI 219
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471
P +Y + CN V+KA + + M +G+ P+ L+ +AG
Sbjct: 220 PDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAG 271
>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 727
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
Q + E+M VPMN + GD A+ ++++M+ G P + SY
Sbjct: 527 MQNAIAVTEEMAFAGVPMNNYIFNTLLDGWAQRGDMWEAYGIMQKMRQEGFTPDIHSYTS 586
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYP 455
++ C GD+ KA E M + + P
Sbjct: 587 FVNACCKAGDMQKATETIEEMKQQDLQP 614
Score = 40.0 bits (92), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
R + ++M L V N S T + + S+G+ +AF +KR+ + P + SY L
Sbjct: 459 RAASVIDEMELAGVQPNFRSYTTLMQGFASIGEIGLAFKCLKRVNEITQKPPIISYASLL 518
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
C G + A +V E M GV LL + G Y ++ K+R
Sbjct: 519 KACCKAGRMQNAIAVTEEMAFAGVPMNNYIFNTLLDGWAQRGDMWEAYGIMQKMR 573
>gi|302791269|ref|XP_002977401.1| hypothetical protein SELMODRAFT_106861 [Selaginella moellendorffii]
gi|300154771|gb|EFJ21405.1| hypothetical protein SELMODRAFT_106861 [Selaginella moellendorffii]
Length = 344
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 401 GDGDMAFDMVKRMKSL--GINPRLRSYGPALSVFCNNGDVDKA-CSVEEHMLEHGVYPEE 457
GD F++ +RM+S GI P +Y LS C +G VD+A +EE +HG+ P
Sbjct: 205 GDSQRVFELFRRMQSREEGIKPDAITYLSVLSACCRSGHVDRAKFYLEEMRSKHGIAPGI 264
Query: 458 PELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGK 512
++R+ +A LL + R V + P D++ W E ++ K
Sbjct: 265 EHYTCMVRLLGQAN-------LLEEARKVVETM-PVKPDIVI-WMALLECCKMWK 310
>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1084
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%)
Query: 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442
V +N+ +++ R G D AF ++ M G P +Y + C+ V+KA
Sbjct: 421 VVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAF 480
Query: 443 SVEEHMLEHGVYPEEPELEALLRVSVEAG 471
S+ E M +G+ P L+ +AG
Sbjct: 481 SLFEEMKRNGIVPSVYTYTILIDSFCKAG 509
>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
Length = 667
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 12/178 (6%)
Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDD-----QSRKKDWSIDNQDADEI---RLSED 362
E G+ M + + L+ G N ERG + + ++ W + + R E
Sbjct: 66 ELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRER 125
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
K A + E++EK V + TAV G A +++ MK G P +
Sbjct: 126 KAKEAEEMLQEMFEKGLAPCV----VTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNV 181
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480
+Y + FCN G V KA ++ M GV P+ L+R G + + LL
Sbjct: 182 WTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLL 239
Score = 40.4 bits (93), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + AF +++ M+ G+ +Y ++ C +G D+ACS+ + + G+ P
Sbjct: 230 GHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTF 289
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTS 486
+L+ ++GK D + L K+ ++
Sbjct: 290 NSLINGLCKSGKADIAWKFLEKMVSA 315
>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
Length = 879
Score = 40.4 bits (93), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 53/131 (40%)
Query: 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415
E L K Q + +M ++P N + GD A D++K+MK
Sbjct: 631 ETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKE 690
Query: 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475
G+ P + +Y ++ C GD+ +A V E M++ G+ P L++ DR
Sbjct: 691 DGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDR 750
Query: 476 VYYLLHKLRTS 486
+++ +
Sbjct: 751 ALKCFEEMKLA 761
Score = 39.3 bits (90), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
+K+ QR + +KM + + NE + T + R + GD AF+ ++K G+ +
Sbjct: 568 VRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDV 627
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHM 448
Y L C +G + A +V M
Sbjct: 628 YIYETLLRACCKSGRMQSALAVTREM 653
>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
Length = 791
Score = 40.4 bits (93), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 3/165 (1%)
Query: 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443
P + S T V GD D A+ M GI P + +Y ++ C +DKA
Sbjct: 193 PPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAME 252
Query: 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFN 503
V M+++GV P+ ++L +G+ L K+R+ + T ++ +
Sbjct: 253 VLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYL- 311
Query: 504 SKEAARLGKKKWNESLIKDTMENKGGGWHGL--GWLGKGKWIVSH 546
K + +K +S+ K ++ + + L G+ KG + H
Sbjct: 312 CKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 356
Score = 39.7 bits (91), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
G D A + +M+ G+NP +YG + + C +G V+ A E M++ G+ P
Sbjct: 385 GKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 439
>gi|357150350|ref|XP_003575429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Brachypodium distachyon]
Length = 684
Score = 40.4 bits (93), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
F+ + +M V N + + S G + A D++ +MK GI P S+ +
Sbjct: 510 AFDCFNEMAEWGVRPNAHTYNVLMHALCSAGHVNKAIDLLNKMKKDGITPDAYSFNAPIL 569
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
FC VDKA ++ ML GV P+ +L++ + + D +L + +S
Sbjct: 570 SFCRMKKVDKARNIFNAMLRLGVVPDNYTYNSLIKALCDERRIDEAKEILLLMESS 625
Score = 40.4 bits (93), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D A +V++M+ GI P + +Y + FCN G + A V + M E GV P E
Sbjct: 225 GIIDEALRLVRQMEGAGIRPNVFTYTMLVDGFCNAGRPEDAVHVFDTMKEKGVSPNEASY 284
Query: 461 EALLRVSVEAGKGDRVYYLL 480
L+ + + Y +L
Sbjct: 285 RTLVHGAFRCLGRHKAYVML 304
>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 568
Score = 40.4 bits (93), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 4/139 (2%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
++GFE+YEKM D V N + V G AF + M+ G++ + +Y
Sbjct: 250 KQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTL 309
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
+ C ++A V + M G+ P L+ GK + L L++ R
Sbjct: 310 IGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKS--R 367
Query: 489 KVSPS--TADVIAKWFNSK 505
+SPS T +++ F K
Sbjct: 368 GLSPSLVTYNILVSGFCKK 386
>gi|293336971|ref|NP_001167873.1| uncharacterized protein LOC100381578 [Zea mays]
gi|223944573|gb|ACN26370.1| unknown [Zea mays]
gi|414585240|tpg|DAA35811.1| TPA: hypothetical protein ZEAMMB73_503732 [Zea mays]
Length = 640
Score = 40.4 bits (93), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
LS+D K + ++E+M P N A TA+ G A + +RMK+ GI
Sbjct: 323 LSKDGKPF---EALAVFERMSKRGCPANAAMYTALIDSMGKFGREKEAMALFERMKATGI 379
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453
+YG ++ C G++++A + +E GV
Sbjct: 380 ELDAVTYGVVVNCLCRFGNLEEALACFRSCVEKGV 414
>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
restorer; AltName: Full=Protein PPR; AltName:
Full=Restorer for CMS; Flags: Precursor
gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
Length = 791
Score = 40.4 bits (93), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 3/165 (1%)
Query: 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443
P + S T V GD D A+ M GI P + +Y ++ C +DKA
Sbjct: 193 PPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAME 252
Query: 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFN 503
V M+++GV P+ ++L +G+ L K+R+ + T ++ +
Sbjct: 253 VLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYL- 311
Query: 504 SKEAARLGKKKWNESLIKDTMENKGGGWHGL--GWLGKGKWIVSH 546
K + +K +S+ K ++ + + L G+ KG + H
Sbjct: 312 CKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 356
Score = 40.0 bits (92), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
G D A + +M+ G+NP +YG + + C +G V+ A E M++ G+ P
Sbjct: 385 GKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 439
>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 630
Score = 40.4 bits (93), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++ +M G+ P +Y L+ FC GD+ KA + + M +G P+ L+
Sbjct: 403 AAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIG 462
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTAD-VIAKWFN---SKEAARL 510
+AG+ + LL ++ ++P + VI F +KEA RL
Sbjct: 463 GLCKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRL 511
>gi|414877568|tpg|DAA54699.1| TPA: hypothetical protein ZEAMMB73_211194, partial [Zea mays]
Length = 709
Score = 40.4 bits (93), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A +++ M S G P + +Y + FC G++D+A + +HM ++G P ALL
Sbjct: 358 AKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLN 417
Query: 466 VSVEAGKGDRVYYLLHK 482
+ GK + LL+K
Sbjct: 418 GLCKVGKSSEAWELLNK 434
>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 873
Score = 40.4 bits (93), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D AF +V+ MK+ G+ ++ + FC G +D+A +V M+E G P+ +
Sbjct: 368 DAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTM 427
Query: 464 LRVSVEAGKGDRVYYLLHKL 483
+ +AGK Y ++ ++
Sbjct: 428 INGYCKAGKMAEAYKMMDEM 447
>gi|302769928|ref|XP_002968383.1| hypothetical protein SELMODRAFT_169661 [Selaginella moellendorffii]
gi|300164027|gb|EFJ30637.1| hypothetical protein SELMODRAFT_169661 [Selaginella moellendorffii]
Length = 532
Score = 40.4 bits (93), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM---AFDMVKRMKSLGINPRLRSYGP 427
+YE++ E+ +N S G + G+ M F M + M S GI P + ++
Sbjct: 299 ALRLYEELKAKEIKLNVLSY---GTLIQIFGEAKMLDRVFQMKRDMDSTGIVPNVVTWTS 355
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
+ V+K V + M++ G P LL V+ G+ D+ + L + +TS
Sbjct: 356 LVGACSKGALVEKTLQVYQDMVQAGCTPNAFTYNFLLSACVDGGQSDKAHKLFREWKTSG 415
Query: 488 RKVS 491
R ++
Sbjct: 416 RILA 419
>gi|222637475|gb|EEE67607.1| hypothetical protein OsJ_25160 [Oryza sativa Japonica Group]
Length = 225
Score = 40.4 bits (93), Expect = 4.0, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 38/74 (51%)
Query: 403 GDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462
D A +++ M+S G+ + +YG + C+ +VDKA + M E G+ P +
Sbjct: 10 ADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSS 69
Query: 463 LLRVSVEAGKGDRV 476
LL+ ++G+ + V
Sbjct: 70 LLQGYCKSGRWEDV 83
>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
Length = 775
Score = 40.4 bits (93), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
F+M+K M+ G+ P +Y ++ NGD+ A V M++ GV P A++
Sbjct: 578 VFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVIN 637
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495
G G+ + ++ + KV P+T
Sbjct: 638 AYCLNGNGNEAMEIFKDMKAA-SKVPPNTV 666
>gi|428185127|gb|EKX53980.1| hypothetical protein GUITHDRAFT_100230 [Guillardia theta CCMP2712]
Length = 636
Score = 40.4 bits (93), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM-----AFDMVKRMKSLGINPRLRSYGPA 428
I+E+M +++ +E V R+ S D + A +M+ RM + + P R+Y
Sbjct: 374 IFEEMVREKISPSE---LVVERVLQSYCDSQVPQPRRAEEMIARMAKMNLKPTTRTYNRL 430
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
+ +CN G++ +A + M G P E + L+R
Sbjct: 431 MECWCNAGNIRRAEEIVLMMEAEGPMPNEFTYQVLVR 467
>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
Length = 455
Score = 40.4 bits (93), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468
+V ++ +G+ P + SY + C G +D+A + E M+ G+ P LL
Sbjct: 157 LVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYC 216
Query: 469 EAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESL-IKDTMENK 527
+AG+ D Y L K+ ++ ++P +N+ K+++E+ + M N
Sbjct: 217 KAGRIDSAYSLFRKMLSN--GITPGVVT-----YNTILHGLFQTKRFSEAKELYLNMINS 269
Query: 528 GGGW 531
G W
Sbjct: 270 GTKW 273
>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Vitis vinifera]
Length = 624
Score = 40.4 bits (93), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Query: 320 HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMC 379
H+K + D + N+E P+ K +SI + ++ S +A+K F+ E+ E+ C
Sbjct: 200 HVKQAQEFFD-KVNVEVMPN----AKTYSILMRGWGDVGDSSEARKL-FE---EMRERGC 250
Query: 380 LDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439
+V + L A+ + G+ D A+ + + M S G+ P SY + +C D+
Sbjct: 251 AVDVVAYNSLLEALCKG----GNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIH 306
Query: 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492
A V + M + + P +++ ++ K D Y LL ++ R VSP
Sbjct: 307 SAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIE--RGVSP 357
Score = 39.7 bits (91), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 53/119 (44%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A+ ++ M G++P L SY + C++ +V+KA + M + P+ +
Sbjct: 341 DEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMV 400
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKD 522
L++ + G+ DRV + + + ST V+ F K+ K+ E +I D
Sbjct: 401 LKMLLRVGRFDRVTDVWGGMEERGFYPAASTYAVMVHGFCKKKGKLEEACKYFEMMIDD 459
>gi|255569835|ref|XP_002525881.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534795|gb|EEF36485.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 913
Score = 40.4 bits (93), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
DMA + K++K LG++P +Y + C NG +++A V + M E G+ P
Sbjct: 215 DMALAVYKQLKRLGLSPNDYTYAIVIKALCINGSLEEAMYVIKEMEESGITP 266
>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 40.4 bits (93), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Query: 320 HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMC 379
H+K + D + N+E P+ K +SI + ++ S +A+K F+ E+ E+ C
Sbjct: 173 HVKQAQEFFD-KVNVEVMPN----AKTYSILMRGWGDVGDSSEARK-LFE---EMRERGC 223
Query: 380 LDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439
+V + L A+ + G+ D A+ + + M S G+ P SY + +C D+
Sbjct: 224 AVDVVAYNSLLEALCKG----GNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIH 279
Query: 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492
A V + M + + P +++ ++ K D Y LL ++ R VSP
Sbjct: 280 SAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIE--RGVSP 330
Score = 39.7 bits (91), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 54/121 (44%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A+ ++ M G++P L SY + C++ +V+KA + M + P+ +
Sbjct: 314 DEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMV 373
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDT 523
L++ + G+ DRV + + + ST V+ F K+ K+ E +I D
Sbjct: 374 LKMLLRVGRFDRVTDVWGGMEERGFYPAASTYAVMVHGFCKKKGKLEEACKYFEMMIDDG 433
Query: 524 M 524
+
Sbjct: 434 I 434
>gi|414877074|tpg|DAA54205.1| TPA: hypothetical protein ZEAMMB73_351899 [Zea mays]
Length = 613
Score = 40.4 bits (93), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 341 QSRKKDWSIDNQDADEIRLSEDAKK-----YAFQRGFEIYE---KMCLDEVPMNE--ASL 390
Q K + +++ + D+I+ + A K YAF + E K+C D ++E +++
Sbjct: 364 QRDKAETLLESMEGDDIQKNRAACKFLLPLYAFLGNGDAVERIWKVCEDNTRIDECLSAI 423
Query: 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450
A G++ + DM + K+L + Y L V+ N +DK + + M E
Sbjct: 424 DAFGKLGNVEKAEKVFEDMFVKWKNLSS----KYYTALLKVYANQNLLDKGEELAKRMDE 479
Query: 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
G P L AL+++ +AG+ ++ LLHKL
Sbjct: 480 EGAKFGTPTLNALVKLYADAGEVEKAESLLHKL 512
>gi|156083863|ref|XP_001609415.1| pentatricopeptide repeat domain containing protein [Babesia bovis
T2Bo]
gi|154796666|gb|EDO05847.1| pentatricopeptide repeat domain containing protein [Babesia bovis]
Length = 1067
Score = 40.4 bits (93), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 8/139 (5%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
QR IY+ M + V N + ++ +GD A +++ M + P L ++
Sbjct: 784 LQRAMSIYDMMVSEGVMRNTVTYNSIIDACARVGDMKAAAALLEEMMMNQVEPDLITFST 843
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL--RT 485
+ +C ++D++ + M E G+ P+ +LL V++G+ +L KL +
Sbjct: 844 IIKGYCVQCNMDQSFQLLSIMYERGIKPDGILYNSLLEGCVKSGR----LWLCEKLWEQM 899
Query: 486 SVRKVSPS--TADVIAKWF 502
+ ++PS T ++ K +
Sbjct: 900 RIHGIAPSNFTLTILIKMY 918
>gi|357484175|ref|XP_003612374.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513709|gb|AES95332.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 620
Score = 40.4 bits (93), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457
G + A ++ + + G P +Y P + V C GD+ KA V M+E G+ P++
Sbjct: 537 GKIESALKFMEDITARGCVPNTETYSPLIDVLCRKGDIQKALQVFLEMVEKGILPDQ 593
>gi|224089785|ref|XP_002308813.1| predicted protein [Populus trichocarpa]
gi|222854789|gb|EEE92336.1| predicted protein [Populus trichocarpa]
Length = 270
Score = 40.4 bits (93), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
F+IY +M + +N ++ M +G D A ++ + MKS GI P ++ ++
Sbjct: 103 AFKIYREMKEKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMKSSGIKPDSWTFSSMIT 162
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476
+F G V + + M E G P L +L++ +A + D V
Sbjct: 163 IFSCCGKVSEVENTLNEMFEAGFQPNIFILTSLIQCYGKAQRIDDV 208
>gi|359496226|ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial-like [Vitis vinifera]
Length = 382
Score = 40.4 bits (93), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468
+V+ M++ GI P S+ + FCN+G VD+A + M E+ P++ L+ +
Sbjct: 257 LVEEMQTKGIKPDGYSFNALIKGFCNDGKVDEATNWYGKMRENDCLPDKLTFATLVPLYC 316
Query: 469 EAGKGDRVYYLLHKL 483
E G D+ + L ++
Sbjct: 317 EKGSFDQAFELCKEI 331
>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 740
Score = 40.4 bits (93), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
M S GI+P + ++G + C +VD AC++ + M HG P + L+ + G+
Sbjct: 226 MLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGR 285
Query: 473 GDRV 476
+ V
Sbjct: 286 VNEV 289
>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
pusilla]
Length = 431
Score = 40.4 bits (93), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 49/105 (46%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
E++++M + + N + T + G D+A ++ KRM S + P L +Y +
Sbjct: 233 ELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGL 292
Query: 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY 477
C GD+ +A + + M+ G+ P++ L+ + G D +
Sbjct: 293 CKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGDLDTAF 337
>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
Length = 901
Score = 40.4 bits (93), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 53/131 (40%)
Query: 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415
E L K Q + +M ++P N + GD A D++K+MK
Sbjct: 653 ETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKE 712
Query: 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475
G+ P + +Y ++ C GD+ +A V E M++ G+ P L++ DR
Sbjct: 713 DGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDR 772
Query: 476 VYYLLHKLRTS 486
+++ +
Sbjct: 773 ALKCFEEMKLA 783
Score = 39.3 bits (90), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
+K+ QR + +KM + + NE + T + R + GD AF+ ++K G+ +
Sbjct: 590 VRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDV 649
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHM 448
Y L C +G + A +V M
Sbjct: 650 YIYETLLRACCKSGRMQSALAVTREM 675
>gi|414864940|tpg|DAA43497.1| TPA: hypothetical protein ZEAMMB73_100357 [Zea mays]
Length = 816
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 7/141 (4%)
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
NE S + M +G D+A + K M++LG+ +L SY + ++ + G ++A +
Sbjct: 662 NEFSHAMMVCMYKKVGRYDVAHRVCKEMQALGLLTQLLSYNSVIQMYVSGGRTEEALKIF 721
Query: 446 EHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNS- 504
+ ML P + +AL + V +G L LR + ++ D + +W+ +
Sbjct: 722 KKMLASNTPPNDATFQALKVILVRSGVTKNETRKLELLRRN------NSHDCLHQWYRAI 775
Query: 505 KEAARLGKKKWNESLIKDTME 525
A R + L+ D ++
Sbjct: 776 SSAVRSNANSFQTGLLIDLLQ 796
>gi|255570073|ref|XP_002525999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534731|gb|EEF36423.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 557
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G+ D+A M+ + +YG +S NNG +DK V E M+ +G+ P++ L
Sbjct: 195 GNIDVAMKYFSEMRKESFRLDIVAYGVVISGLVNNGRLDKVLEVMEDMVRNGLAPDKVVL 254
Query: 461 EALLRVSVEAGKGDRVY 477
L+ +AG Y
Sbjct: 255 TTLMHAHFKAGNTKAAY 271
>gi|168052832|ref|XP_001778843.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669712|gb|EDQ56293.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 953
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D AF+M M LG+ P + +Y +S GD+++ACS+ M E GV L
Sbjct: 514 DEAFEMKAAMLRLGVQPTVVTYNSLISACVKIGDLERACSLFPEMKELGVEANTHCYNPL 573
Query: 464 LRVSVEAGKGDRVYYLLHKL 483
++ G+ DR ++ +
Sbjct: 574 IQGFAMQGRFDRALAVMRSM 593
>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
Length = 609
Score = 40.0 bits (92), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 64/127 (50%), Gaps = 10/127 (7%)
Query: 406 AFDMVKRMK-SLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEAL 463
A++++K M+ + P L +Y ++ FC G++D+AC + M+ G+ P+ ++
Sbjct: 28 AYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGMAPDVVTYTSV 87
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSP---STADVIAKWFNSK---EAARLGKKKWNE 517
+ GK DR ++ +++ ++ V P + + +I W N++ EA +L K+
Sbjct: 88 VDGLCRDGKMDRACEMVREMK--LKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTS 145
Query: 518 SLIKDTM 524
S D +
Sbjct: 146 SCRLDAV 152
>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g31840-like [Vitis vinifera]
Length = 1131
Score = 40.0 bits (92), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442
V M+ +++ + +GD A ++ RM GI+P + +Y ++ C NG V +AC
Sbjct: 341 VKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEAC 400
Query: 443 SVEEHMLEHGVYP 455
V +L+ G+ P
Sbjct: 401 GVFGQILKQGLEP 413
>gi|222613073|gb|EEE51205.1| hypothetical protein OsJ_32021 [Oryza sativa Japonica Group]
Length = 60
Score = 40.0 bits (92), Expect = 4.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 412 RMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
+M+ G+NP + YG + V C +G VD A E M++ G+ P
Sbjct: 6 KMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTP 49
>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
Length = 900
Score = 40.0 bits (92), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 53/131 (40%)
Query: 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415
E L K Q + +M ++P N + GD A D++K+MK
Sbjct: 652 ETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKE 711
Query: 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475
G+ P + +Y ++ C GD+ +A V E M++ G+ P L++ DR
Sbjct: 712 DGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDR 771
Query: 476 VYYLLHKLRTS 486
+++ +
Sbjct: 772 ALKCFEEMKLA 782
Score = 38.9 bits (89), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
+K+ QR + +KM + + NE + T + R + GD AF+ ++K G+ +
Sbjct: 589 VRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDV 648
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHM 448
Y L C +G + A +V M
Sbjct: 649 YIYETLLRACCKSGRMQSALAVTREM 674
>gi|15242530|ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39980, chloroplastic; Flags: Precursor
gi|10176990|dbj|BAB10222.1| unnamed protein product [Arabidopsis thaliana]
gi|332007115|gb|AED94498.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 678
Score = 40.0 bits (92), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/155 (18%), Positives = 69/155 (44%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
F ++ M ++ N + + ++ + + A ++V+ M+S GI P +Y
Sbjct: 381 FGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYST 440
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
+S++ G +D+A ++ + + GV ++ + ++ G LLH+L+
Sbjct: 441 IISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPD 500
Query: 488 RKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKD 522
+ ++AK ++EA + ++ + +KD
Sbjct: 501 NIPRETAITILAKAGRTEEATWVFRQAFESGEVKD 535
>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
Length = 742
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 389 SLTAVGRMAMSMGDGDMAFD---MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
+L + M +G + F+ ++ M+ G++P + Y LS C G V A SV
Sbjct: 502 TLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVL 561
Query: 446 EHMLEHGVYPEEPELEALLRVSVEA 470
+ ML+ G+ P L++ +A
Sbjct: 562 DEMLQKGISPNISSFSILIKAFCKA 586
>gi|218200036|gb|EEC82463.1| hypothetical protein OsI_26904 [Oryza sativa Indica Group]
Length = 346
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%)
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
N S T + R + D A +++ M+S G+ + +YG + C+ +VDKA +
Sbjct: 114 NAVSYTVLMRALCADRRADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELM 173
Query: 446 EHMLEHGVYPEEPELEALLRVSVEAGK 472
M E G+ P +LL+ ++G+
Sbjct: 174 GEMCESGIEPNVVVYSSLLQGYCKSGR 200
>gi|403223056|dbj|BAM41187.1| pentatricopeptide repeat containing protein [Theileria orientalis
strain Shintoku]
Length = 1735
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 47/102 (46%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
+ +I+ M D+V N + ++ +GD A +++ M I P L ++ +
Sbjct: 1404 KAMKIFRMMQQDQVVPNTVTYNSIIDACARVGDMSGATSLLEDMLMNDIEPDLITFSTII 1463
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471
+C D+DK+ + M E G+ P+ +LL V++G
Sbjct: 1464 KGYCVQSDMDKSFQLLSIMYERGIMPDVILYNSLLEGCVKSG 1505
>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 874
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A+ ++K M +GI P + SY + C NG + A + M+ +G+ P+ LL
Sbjct: 345 AWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLH 404
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPST 494
GK LLH++ ++ SP+T
Sbjct: 405 GYCSKGKVFEANNLLHEMISN--NCSPNT 431
>gi|218200855|gb|EEC83282.1| hypothetical protein OsI_28637 [Oryza sativa Indica Group]
Length = 662
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442
V +NE S TA+ + G D F+M+ + G+ P + +Y + C +G V++A
Sbjct: 7 VALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAF 66
Query: 443 SVEEHMLEHGVYP 455
++ M + G+ P
Sbjct: 67 RLKGRMEQGGMTP 79
>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Glycine max]
Length = 1024
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%)
Query: 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442
V +N+ +++ R G D AF+++ M S G P +Y + C+ V+KA
Sbjct: 414 VVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAF 473
Query: 443 SVEEHMLEHGVYPEEPELEALLRVSVEAG 471
+ E M ++G+ P L+ +AG
Sbjct: 474 LLFEEMKKNGIVPSVYTYTILIDSFCKAG 502
>gi|347954458|gb|AEP33729.1| chlororespiratory reduction 21, partial [Brassica rapa]
Length = 788
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 5/149 (3%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
++ +M L+ VP N + + + G D A M +M+S GI P + S+ ++
Sbjct: 416 ALRLFYEMQLESVPPNVITWNLIILSLLRNGQVDEAKKMFLQMQSSGIVPTIVSWTTMMN 475
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR-----VSVEAGKGDRVYYLLHKLRT 485
NG ++A M E+G+ P + L S+ G+ Y + ++L +
Sbjct: 476 GLVQNGCSEEAIHYLRKMQEYGMRPNVFSITVALSACANLASLHFGRSVHGYIIRNRLHS 535
Query: 486 SVRKVSPSTADVIAKWFNSKEAARLGKKK 514
S + S D+ AK + +A ++ ++K
Sbjct: 536 SSVSIETSLVDMYAKCGDISKAEKVFRRK 564
>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
Length = 734
Score = 40.0 bits (92), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 9/111 (8%)
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468
++ M+ +G+ P SY P +S +C G D+A V + M+ G+ P E LL
Sbjct: 436 LIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYC 495
Query: 469 EAGKGDRVYYLLHKLRTSVRK-VSPSTADVIAKWFNSKEAARLGKKKWNES 518
A + D Y L R +RK V+P +N+ K+++E+
Sbjct: 496 SASRIDDAYCL---FREMLRKGVTPGVVT-----YNTILHGLFQTKRFSEA 538
>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62914, mitochondrial; Flags: Precursor
gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats. EST gb|AA728420 comes from this gene
[Arabidopsis thaliana]
gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 528
Score = 40.0 bits (92), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
+G E++ +M + N + T + D D A + K+M S+G++P + +Y L
Sbjct: 411 KGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILL 470
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
C NG + KA V E++ + P+ ++ +AGK
Sbjct: 471 DGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK 513
>gi|357143144|ref|XP_003572818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Brachypodium distachyon]
Length = 496
Score = 40.0 bits (92), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D A + M G P + +Y + V C G+V+ A +V + M+ P
Sbjct: 293 GQLDKARKLFDEMSKEGCPPTIATYNALIQVICKKGNVEDAVTVFDDMIRKDYIPNVVTY 352
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKW 501
L+R GK DR L+ +++ + T +V+ ++
Sbjct: 353 TVLIRGLCHVGKIDRAMKLMERMKNEGCEPVVQTYNVLIRY 393
>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
Length = 420
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
+K F+ G E ++M + N A+ TA+ G A ++ M ++G +
Sbjct: 244 CQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDV 303
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
Y + C G++D A ++ M+E GV P+ +L++ +AG D L+ +
Sbjct: 304 VIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQE 363
Query: 483 LR 484
+R
Sbjct: 364 MR 365
>gi|357436823|ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477735|gb|AES58938.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 587
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 8/126 (6%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A M++R L I P L +Y + FC GD++ A + + M+ G P R
Sbjct: 343 ALGMMERFHVLQIGPTLSTYNSLVKGFCKAGDIEGASKILKKMISRGFLPIPTTYNYFFR 402
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTME 525
GK D L K+ S T ++ K +E L ++ +ME
Sbjct: 403 YFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLVLKMLCEEEKLELA--------VQVSME 454
Query: 526 NKGGGW 531
+ G+
Sbjct: 455 MRHKGY 460
>gi|224076898|ref|XP_002305039.1| predicted protein [Populus trichocarpa]
gi|222848003|gb|EEE85550.1| predicted protein [Populus trichocarpa]
Length = 800
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
G D A + K++KSLG+NP +Y + FC G + +A +V + M GV P
Sbjct: 213 GKVDAALAIYKQLKSLGLNPNDYTYSIIIKAFCRKGSLVEASNVFQEMELCGVIP 267
>gi|356521277|ref|XP_003529283.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
mitochondrial-like [Glycine max]
Length = 379
Score = 40.0 bits (92), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 14/151 (9%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD-GDMAFDMVKRM-----KSLGINPRLRS 424
G + + DE+P S T + A+ +D+V+ + L I P L +
Sbjct: 105 GMTKHARKVFDEMPQRNCSRTVLSLNALLAAYLHSHKYDVVQELFRDLPTQLSIKPDLVT 164
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK---GDRVYYLLH 481
Y + FC G D A SV + E G+ P+ LL G+ G++V+
Sbjct: 165 YNTIIKAFCEKGSFDSALSVLREIEEKGLSPDSITFNTLLDGLYSKGRFEEGEKVWE--- 221
Query: 482 KLRTSVRKVSPSTADVIAKWFNSKEAARLGK 512
+ SV V+P +K E + G+
Sbjct: 222 --QMSVNNVAPGVRSYCSKLVGLAEVKKAGE 250
>gi|473874|gb|AAA17740.1| a membrane-associated salt-inducible protein [Nicotiana tabacum]
Length = 435
Score = 40.0 bits (92), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 49/113 (43%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
F I+E + D + + + R MG+ D A +V++MK P R++ P +
Sbjct: 15 AFAIFEDVIRDGLKPDVVLYNNIIRAFCGMGNMDRALRIVEQMKKERHRPTSRTFMPIIH 74
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
F G + KA V + M G P AL+ VE + D+ ++ ++
Sbjct: 75 AFAKAGAIRKALDVFDMMRRSGCIPTVQTYNALILGLVEKRQMDKAVEVVDEM 127
>gi|356528730|ref|XP_003532952.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g73710-like [Glycine max]
Length = 963
Score = 40.0 bits (92), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%)
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
NE++ ++ +M D A D+V M+ +G P +++ + + G + A SV
Sbjct: 515 NESTYNSLVQMLSGADLVDQAMDLVDEMQEVGFKPPCQTFSAVIGCYARLGQLSDAVSVF 574
Query: 446 EHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
+ M+ GV P E +L+ E G + H + S
Sbjct: 575 KEMVRTGVKPNEVVYGSLINGFAEHGSLEEALKYFHMMEES 615
>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
Length = 862
Score = 40.0 bits (92), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468
++ M+ +G+ P + SY + C G D+A + + M+ G+ P+ + LLR
Sbjct: 571 LIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYC 630
Query: 469 EAGKGDRVYYLLHK-LRTSVRKVSPSTADVIAKWFNSK 505
+ G+ D Y L + LR V + + + ++ F+++
Sbjct: 631 KTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTR 668
>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 40.0 bits (92), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
Q G + E M V A+ T + + GD D A + +M S G P + +Y
Sbjct: 581 QEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAF 640
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPE 456
+ +C +G+V +A + M+E GV P+
Sbjct: 641 IHTYCTSGNVKEAEGMMARMIEAGVMPD 668
>gi|2191192|gb|AAB61077.1| similar to N. tabacum membrane-associated salt-inducible protein
(PID:g473874) [Arabidopsis thaliana]
Length = 934
Score = 40.0 bits (92), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
LS KK + +++ +M + VP NE + T V G + A MKSLG
Sbjct: 256 LSSLQKKSFHGKVIDLWLEMVEEGVPPNEFTYTLVVSSYAKQGFKEEALKAFGEMKSLGF 315
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
P +Y +S+ GD +KA + E M G+ P
Sbjct: 316 VPEEVTYSSVISLSVKAGDWEKAIGLYEDMRSQGIVP 352
>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
Length = 592
Score = 40.0 bits (92), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 1/127 (0%)
Query: 329 DGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA 388
+GR +L G D D + + I L+ K + EI+ K+ P N +
Sbjct: 370 EGRLDLAIGIMDYMISNGCLPDIVNYNTI-LAALCKNGNANQALEIFNKLRGMGCPPNVS 428
Query: 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448
S + S GD A MV M S GI+P +Y +S C +G V++A + + M
Sbjct: 429 SYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDM 488
Query: 449 LEHGVYP 455
+ G P
Sbjct: 489 EQSGFRP 495
>gi|357154778|ref|XP_003576898.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46610-like [Brachypodium distachyon]
Length = 623
Score = 40.0 bits (92), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL-L 464
A ++ KRM G+ P + SYG LS D+A V +HML+ G+ +P L A +
Sbjct: 433 AVNIFKRMIDEGLKPDVVSYGALLSALEKGKLYDEALRVWKHMLKVGI---DPNLHAYTI 489
Query: 465 RVSVEAGKGD 474
VS+ GKG+
Sbjct: 490 LVSIYIGKGN 499
>gi|449460864|ref|XP_004148164.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g62370-like [Cucumis sativus]
Length = 693
Score = 40.0 bits (92), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 41/95 (43%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A D + M SLG P L +Y + C + A S+ +HM ++ ++P ++
Sbjct: 486 ALDYLHNMVSLGCKPLLFTYNSLIRRLCKERLFEDAMSLIDHMKDYSLFPNTTTYLIIVN 545
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAK 500
G Y++L K+R K S + D I +
Sbjct: 546 EYCRQGNVTAAYHILRKMRQVGLKPSVAIYDSIIR 580
>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
Length = 822
Score = 40.0 bits (92), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442
V M+ +++ + +GD A ++ RM GI+P + +Y ++ C NG V +AC
Sbjct: 341 VKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEAC 400
Query: 443 SVEEHMLEHGVYPEEPELEALL 464
V +L+ G+ P +L+
Sbjct: 401 GVFGQILKQGLEPSVLTYSSLI 422
>gi|356574119|ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial-like [Glycine max]
Length = 942
Score = 40.0 bits (92), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Query: 343 RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD 402
R+K W +D + LS +K + FE+ E+M + +NE + + + G
Sbjct: 235 REKGW-VDGHVCSMLALSF-SKWGDVDKAFELVERMEGHGMRLNEKTFCVLIHGFVKEGR 292
Query: 403 GDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456
D A + M +G P + + + C NGD +A S+ M E GV P+
Sbjct: 293 VDRALQLFDIMCRVGFTPPVSLFDVLIGGLCRNGDSHRALSLLSEMKEFGVTPD 346
>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
Length = 580
Score = 40.0 bits (92), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+R F + ++M VP +E + + + G + A ++ MK GI P SY
Sbjct: 435 ERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTL 494
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+S + GD+ A V + ML G P AL++ + +GD LL ++
Sbjct: 495 ISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEM 549
>gi|297797201|ref|XP_002866485.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312320|gb|EFH42744.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 983
Score = 40.0 bits (92), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 4/173 (2%)
Query: 380 LDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439
LD VP + L V + + D D AF ++ M+ LG+ P + Y + G V
Sbjct: 542 LDFVPDVDTYLIVVNELCKN-NDRDAAFSVIDVMEELGLRPTVAIYSSIIGSLGKQGRVV 600
Query: 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIA 499
+A MLE G+ P+E ++ G+ D L+ ++ + S T V+
Sbjct: 601 EAEETFAKMLESGIQPDEIAYMIMINAYARNGRIDEANELVEEVVKHFVRPSSFTYTVLI 660
Query: 500 KWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL--GWLGKGKWIVSHTTVG 550
F G ++ + +++D + + L +L KG + S T G
Sbjct: 661 SGFVKMGMMEKG-CQYLDKMLEDGLSPNAVLYTSLIGHFLKKGDFKFSFTLFG 712
>gi|224014246|ref|XP_002296786.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968641|gb|EED86987.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 1014
Score = 40.0 bits (92), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441
+ P N A +TA R + + GD A +++R+++ I+P +Y + V +G D+A
Sbjct: 728 DAPFN-AVITAYARSS-NPNAGDRALAVLERLEASCISPTATTYNAVMDVCAKHGQPDRA 785
Query: 442 CSVEEHMLEHGVYPEEPELEALLRVSVE---AGKGDRVYYLLHKL 483
V E M E + P+ + +L G +R + L +L
Sbjct: 786 LQVFERMREQSISPDPTSYDTVLNAFARDETIGSAERAWEFLCRL 830
>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Brachypodium distachyon]
Length = 897
Score = 40.0 bits (92), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
D D AF+++ M++ GI P +YG ++ C NG+ +A ++ E M+ G+ P
Sbjct: 435 DKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKP 488
>gi|296089012|emb|CBI38715.3| unnamed protein product [Vitis vinifera]
Length = 429
Score = 40.0 bits (92), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456
AFD+ K G++P +SY +S FC NGD+ A ++ M + V P+
Sbjct: 182 AFDLFKSAHRYGVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPD 232
>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
Length = 1269
Score = 40.0 bits (92), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456
G+ + A D+++ M + G+ P Y P +S +C G+V AC + + M + V P+
Sbjct: 446 GEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPD 501
>gi|390474529|ref|XP_003734795.1| PREDICTED: LOW QUALITY PROTEIN: leucine-rich PPR motif-containing
protein, mitochondrial [Callithrix jacchus]
Length = 1722
Score = 40.0 bits (92), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 1/124 (0%)
Query: 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441
++P+ EA ++ R GD + A +++ M+ GI P +Y L+ + GD+D
Sbjct: 551 DLPITEAVFNSLIRGHARAGDMENAENILTVMREAGIEPGPDTYLALLNAYAEKGDIDHV 610
Query: 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKW 501
E + + +Y + +L ++ +AG V +L KL T R+ P ++I
Sbjct: 611 KQTLEKVEKSELYLTDRDLLQIIFSFAKAGYPQYVSGILEKL-TCERRYIPDAINLILLL 669
Query: 502 FNSK 505
K
Sbjct: 670 VTEK 673
>gi|7268200|emb|CAB77727.1| hypothetical protein [Arabidopsis thaliana]
Length = 454
Score = 40.0 bits (92), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 8/129 (6%)
Query: 359 LSEDAKKYAFQ--RGF--EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMK 414
+S KK FQ RG +++E C ++ + +G+M G D+A ++ R+
Sbjct: 183 MSSFVKKGYFQTARGVLDQMFENFCAADIATYNVIIQGLGKM----GRADLASAVLDRLT 238
Query: 415 SLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474
G + Y ++ +D+A + +HM +G+ P+ ++ V+ +AGK
Sbjct: 239 KQGGYLDIVMYNTLINALGKATRLDEATQLFDHMKSNGINPDVVSYNTMIEVNSKAGKLK 298
Query: 475 RVYYLLHKL 483
Y L +
Sbjct: 299 EAYKYLKAM 307
>gi|32488707|emb|CAE03450.1| OSJNBa0088H09.8 [Oryza sativa Japonica Group]
Length = 905
Score = 40.0 bits (92), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 53/131 (40%)
Query: 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415
E L K Q + +M ++P N + GD A D++K+MK
Sbjct: 657 ETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKE 716
Query: 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475
G+ P + +Y ++ C GD+ +A V E M++ G+ P L++ DR
Sbjct: 717 DGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDR 776
Query: 476 VYYLLHKLRTS 486
+++ +
Sbjct: 777 ALKCFEEMKLA 787
>gi|414864941|tpg|DAA43498.1| TPA: hypothetical protein ZEAMMB73_100357 [Zea mays]
Length = 788
Score = 40.0 bits (92), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%)
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
NE S + M +G D+A + K M++LG+ +L SY + ++ + G ++A +
Sbjct: 662 NEFSHAMMVCMYKKVGRYDVAHRVCKEMQALGLLTQLLSYNSVIQMYVSGGRTEEALKIF 721
Query: 446 EHMLEHGVYPEEPELEALLRVSVEAG 471
+ ML P + +AL + V +G
Sbjct: 722 KKMLASNTPPNDATFQALKVILVRSG 747
>gi|358421656|ref|XP_003585062.1| PREDICTED: leucine-rich PPR motif-containing protein,
mitochondrial-like, partial [Bos taurus]
Length = 478
Score = 40.0 bits (92), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441
++P+ EA +A+ GD + A +++ MK GI P +Y L+ + GD+D
Sbjct: 178 DLPVTEAVFSALVTGHARSGDMENAENILTVMKEAGIEPGPDTYLALLNAYAEKGDIDHV 237
Query: 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKW 501
E + + +Y + +L ++ +AG V +L K+ T R+ P T ++I
Sbjct: 238 KQTLEKVEKSDLYLMDRDLLQIILSFSKAGYPQYVPEILEKI-TYERRYIPDTMNLILLL 296
Query: 502 FNSK 505
K
Sbjct: 297 VTEK 300
>gi|449525162|ref|XP_004169587.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g73710-like [Cucumis sativus]
Length = 1026
Score = 40.0 bits (92), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 47/96 (48%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433
++ +M + M+ + + S G A ++ +M+ G++P ++Y LS++
Sbjct: 343 VFGEMLTTGISMDTITFNTMIYTCGSHGHLAEAETLLLKMEERGLSPDTKTYNIFLSLYA 402
Query: 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469
N+G++D A + E G++P+ ALL V E
Sbjct: 403 NDGNIDGALKCYRRIREVGLFPDVVTHRALLHVLSE 438
>gi|449449102|ref|XP_004142304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial-like [Cucumis sativus]
gi|449510601|ref|XP_004163711.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial-like [Cucumis sativus]
Length = 849
Score = 40.0 bits (92), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 45/107 (42%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
R E+++ +C + S + + G + A++ + +M+ G+ P SY
Sbjct: 611 LDRALELFQDICTRGCRPDVVSHNILIKGYCKAGKVNEAYNFLHKMRVAGLVPSAVSYNL 670
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474
++ +C NGD+DKA M E P L+ +G+ D
Sbjct: 671 LINEWCKNGDIDKAILCLSQMNEENKKPTIISYTTLINGCCNSGRPD 717
>gi|359070014|ref|XP_002691297.2| PREDICTED: leucine-rich PPR motif-containing protein, mitochondrial
[Bos taurus]
Length = 1394
Score = 40.0 bits (92), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441
++P+ EA +A+ GD + A +++ MK GI P +Y L+ + GD+D
Sbjct: 228 DLPVTEAVFSALVTGHARSGDMENAENILTVMKEAGIEPGPDTYLALLNAYAEKGDIDHV 287
Query: 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKW 501
E + + +Y + +L ++ +AG V +L K+ T R+ P T ++I
Sbjct: 288 KQTLEKVEKSDLYLMDRDLLQIILSFSKAGYPQYVPEILEKI-TYERRYIPDTMNLILLL 346
Query: 502 FNSK 505
K
Sbjct: 347 VTEK 350
>gi|449437884|ref|XP_004136720.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g63330-like [Cucumis sativus]
gi|449501182|ref|XP_004161300.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g63330-like [Cucumis sativus]
Length = 728
Score = 40.0 bits (92), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468
+ MK+ I P Y + C + +DKA + E M+E+G+ PEE +++ V
Sbjct: 293 LFTMMKASNIVPGTLIYSTLIQSLCKSLSLDKALFLLEEMVENGLIPEESVYVSIVEVFF 352
Query: 469 EAGKGD 474
E GK D
Sbjct: 353 ELGKTD 358
>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
Length = 624
Score = 40.0 bits (92), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%)
Query: 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445
N S T + R + D A +++ M+S G+ + +YG + C+ +VDKA +
Sbjct: 114 NAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELM 173
Query: 446 EHMLEHGVYPEEPELEALLRVSVEAGK 472
M E G+ P +LL+ ++G+
Sbjct: 174 GEMCESGIEPNVVVYSSLLQGYCKSGR 200
>gi|357142551|ref|XP_003572610.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 454
Score = 40.0 bits (92), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452
+G +AM+ G GD A ++ +RM G P ++ AL + G VD+ + + M HG
Sbjct: 284 IGGLAMN-GHGDRALELFQRMLQEGFVPNQSTFAGALCACTHTGHVDEGREIFKSMWHHG 342
Query: 453 VYPEEPELEALLRVSVEAGK 472
+ P+ L + AG+
Sbjct: 343 IEPQREHYGCLADLLGRAGR 362
>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Glycine max]
Length = 836
Score = 40.0 bits (92), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 74/177 (41%), Gaps = 19/177 (10%)
Query: 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRM 413
AD I EDA K F + + YEK+ L V N + A R+ G+ AF + M
Sbjct: 619 ADRI---EDAVK--FFKNLD-YEKVELSSVVYN-ILIAAYCRI----GNVTEAFKLRDAM 667
Query: 414 KSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473
KS GI P +Y + C G VD+A + E M G+ P AL+ + G+
Sbjct: 668 KSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQM 727
Query: 474 DRVYYLLHKLRTSVRKVSPS------TADVIAKWFNSKEAARLGKKKWNESLIKDTM 524
D V +L L S + P+ D K N KEA L + + DT+
Sbjct: 728 DIVGSIL--LEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTV 782
>gi|108711657|gb|ABF99452.1| Calreticulin family protein, expressed [Oryza sativa Japonica
Group]
Length = 1111
Score = 40.0 bits (92), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A+++ +M++ G+ + ++ +S + NGD ++A + + M HGV + L+
Sbjct: 407 AYELFCKMENYGVRRNVITWNTMISGYIRNGDDERAFELFQMMESHGVKRDTATWNILIA 466
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRK--------VSPSTADVIAKW 501
SV G DR + +++ +R+ + P+ +++A W
Sbjct: 467 GSVHNGYYDRAIRIFRQMQALLRRPDYITILSIIPAFTNLVASW 510
>gi|302776386|ref|XP_002971363.1| hypothetical protein SELMODRAFT_451140 [Selaginella moellendorffii]
gi|300161345|gb|EFJ27961.1| hypothetical protein SELMODRAFT_451140 [Selaginella moellendorffii]
Length = 745
Score = 39.7 bits (91), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Query: 387 EASLTAVGRMAMSMG---DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443
E S+ + + ++ + D+A + MK L + P R+Y + + D+A +
Sbjct: 534 EVSIVTMNSIIFTLSVSHNPDLAMKIFYWMKDLKVKPNTRTYTTVIDMLVKMRHFDRAMA 593
Query: 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+ + ML+ G P+ L++ GK D +LL K+
Sbjct: 594 IYQEMLDAGCKPDAHTYTVLIQSLGREGKIDAAEHLLEKM 633
>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
Length = 1167
Score = 39.7 bits (91), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456
G+ + A D+++ M + G+ P Y P +S +C G+V AC + + M + V P+
Sbjct: 341 GEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPD 396
>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 675
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D+A ++ M GI P + +Y L FC G V +A + M + G P + L
Sbjct: 172 DVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVL 231
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSK----EAARLGKK 513
+ +G+ ++ L+ ++ +VS T D + + + K EA+RLG++
Sbjct: 232 VNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEE 285
>gi|302763707|ref|XP_002965275.1| hypothetical protein SELMODRAFT_83272 [Selaginella moellendorffii]
gi|300167508|gb|EFJ34113.1| hypothetical protein SELMODRAFT_83272 [Selaginella moellendorffii]
Length = 445
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 397 AMSMGDG-----DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451
AM+ G G D AF+++ M+S G ++ P + C +G D+AC V E ML
Sbjct: 123 AMATGLGKAGLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGKPDEACKVMETMLLR 182
Query: 452 GVYPEEPELEALLRVSVEAGK 472
+ P L +L +A +
Sbjct: 183 NIEPNILTLNLILHAFCKAAR 203
>gi|15238076|ref|NP_199547.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180684|sp|Q9LVS3.1|PP422_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g47360
gi|8809619|dbj|BAA97170.1| unnamed protein product [Arabidopsis thaliana]
gi|332008119|gb|AED95502.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 477
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 378 MCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437
+C D V N V R+ GD ++A ++K M +G+ P + +Y ++ +CN G
Sbjct: 161 VCADTVAYN-----LVIRLFADKGDLNIADMLIKEMDCVGLYPDVITYTSMINGYCNAGK 215
Query: 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+D A + + M +H +L ++G +R LL ++
Sbjct: 216 IDDAWRLAKEMSKHDCVLNSVTYSRILEGVCKSGDMERALELLAEM 261
>gi|296482624|tpg|DAA24739.1| TPA: CG14786-like [Bos taurus]
Length = 1391
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441
++P+ EA +A+ GD + A +++ MK GI P +Y L+ + GD+D
Sbjct: 228 DLPVTEAVFSALVTGHARSGDMENAENILTVMKEAGIEPGPDTYLALLNAYAEKGDIDHV 287
Query: 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKW 501
E + + +Y + +L ++ +AG V +L K+ T R+ P T ++I
Sbjct: 288 KQTLEKVEKSDLYLMDRDLLQIILSFSKAGYPQYVPEILEKI-TYERRYIPDTMNLILLL 346
Query: 502 FNSK 505
K
Sbjct: 347 VTEK 350
>gi|440899597|gb|ELR50879.1| Leucine-rich PPR motif-containing protein, mitochondrial [Bos
grunniens mutus]
Length = 1408
Score = 39.7 bits (91), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441
++P+ EA +A+ GD + A +++ MK GI P +Y L+ + GD+D
Sbjct: 228 DLPVTEAVFSALVTGHARSGDMENAENILTVMKEAGIEPGPDTYLALLNAYAEKGDIDHV 287
Query: 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKW 501
E + + +Y + +L ++ +AG V +L K+ T R+ P T ++I
Sbjct: 288 KQTLEKVEKSDLYLMDRDLLQIILSFSKAGYPQYVPEILEKI-TYERRYIPDTMNLILLL 346
Query: 502 FNSK 505
K
Sbjct: 347 VTEK 350
>gi|356574085|ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20740-like [Glycine max]
Length = 733
Score = 39.7 bits (91), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 15/157 (9%)
Query: 358 RLSEDAKKYA-----------FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMA 406
R+ D K YA Q G+E++ +M ++ A+ ++ G ++A
Sbjct: 335 RVEPDVKAYATMIVGLAKGGRVQEGYELFREMKGKGCLVDRVIYGALVEAFVAEGKVELA 394
Query: 407 FDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466
FD++K + S G L Y + CN V KA + + + G+ P+ ++ LL
Sbjct: 395 FDLLKDLVSSGYRADLGIYICLIEGLCNLNRVQKAYKLFQLTVREGLEPDFLTVKPLLVA 454
Query: 467 SVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFN 503
EA + + LL +++ + P AD ++K+F+
Sbjct: 455 YAEANRMEEFCKLLEQMQ---KLGFPVIAD-LSKFFS 487
>gi|356573667|ref|XP_003554979.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Glycine max]
Length = 390
Score = 39.7 bits (91), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454
R+ GD D+VK MK G + + +Y LS C NG +D+A + E M ++
Sbjct: 191 RILCKSGDCKRVSDLVKEMKRSGCDMDVSTYNLLLSCLCKNGKIDEAWQLLEAMEKNYGL 250
Query: 455 PEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST---ADVIAKWFNS 504
+ L+ + + D V LL K+ ++ + PS A +I +F S
Sbjct: 251 TNAHSFDILINFLCKRRQFDSVLKLLDKM--FLKGIEPSILTHAAIIKSYFES 301
>gi|413953460|gb|AFW86109.1| hypothetical protein ZEAMMB73_051838 [Zea mays]
Length = 240
Score = 39.7 bits (91), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D A +M M LG P + +Y +S G +D+A S M EHG P+
Sbjct: 95 GRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMIDEALSTMRRMQEHGCIPDINSY 154
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIA 499
+L + G R +L ++ S VSP DV++
Sbjct: 155 NIILNGLAKTGGPHRAMEMLSNMKQST--VSP---DVVS 188
>gi|413953459|gb|AFW86108.1| hypothetical protein ZEAMMB73_051838 [Zea mays]
Length = 388
Score = 39.7 bits (91), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D A +M M LG P + +Y +S G +D+A S M EHG P+
Sbjct: 95 GRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMIDEALSTMRRMQEHGCIPDINSY 154
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495
+L + G R +L ++ S VSP
Sbjct: 155 NIILNGLAKTGGPHRAMEMLSNMKQST--VSPDVV 187
>gi|297835316|ref|XP_002885540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331380|gb|EFH61799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 841
Score = 39.7 bits (91), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%)
Query: 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451
AV + +G +MA ++ K M I P + YG ++ F + G+V +A S E M E
Sbjct: 579 AVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEA 638
Query: 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
G+ +L+++ + G D + KL S
Sbjct: 639 GIPENSVIYNSLIKLYTKVGYLDEAEAIYRKLLRS 673
>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 489
Score = 39.7 bits (91), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G D A + M G P + +Y + V C G+V+ A +V + M+ P
Sbjct: 286 GQLDKARKLFDEMSKEGCTPSVATYNALIQVICKKGNVEDAVTVFDDMVRKDYMPNVVTY 345
Query: 461 EALLRVSVEAGKGDRVYYLLHKLR 484
L+R GK DR L+ +++
Sbjct: 346 TVLIRGLCHVGKIDRAMKLMERMK 369
>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
Length = 837
Score = 39.7 bits (91), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%)
Query: 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443
PMN T++ + + G+ D A ++ ++ G+ P +Y + CN+G+++KA
Sbjct: 322 PMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASE 381
Query: 444 VEEHMLEHGVYPEEPELEALLRVSVEA 470
+ M +G+ P + +LLR ++A
Sbjct: 382 LYTQMKLNGIPPSVFNVNSLLRGYLKA 408
>gi|426223751|ref|XP_004006037.1| PREDICTED: leucine-rich PPR motif-containing protein, mitochondrial
[Ovis aries]
Length = 1391
Score = 39.7 bits (91), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441
++P+ EA +A+ GD + A +++ MK GI P +Y L+ + GD+D
Sbjct: 228 DLPVTEAVFSALVTGHARSGDMENAENILTVMKEAGIEPGPDTYLALLNAYAEKGDIDHV 287
Query: 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKW 501
E + + +Y + +L ++ +AG V +L K+ T R+ P T ++I
Sbjct: 288 KQTLEKVEKSDLYLMDRDLLQIILSFSKAGYPQYVPEILEKI-TYERRYIPDTMNLILLL 346
Query: 502 FNSK 505
K
Sbjct: 347 VTEK 350
>gi|115444031|ref|NP_001045795.1| Os02g0132100 [Oryza sativa Japonica Group]
gi|41052573|dbj|BAD07755.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535326|dbj|BAF07709.1| Os02g0132100 [Oryza sativa Japonica Group]
gi|125537962|gb|EAY84357.1| hypothetical protein OsI_05732 [Oryza sativa Indica Group]
gi|125580699|gb|EAZ21630.1| hypothetical protein OsJ_05259 [Oryza sativa Japonica Group]
Length = 871
Score = 39.7 bits (91), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461
+ D ++ MK GI P + +Y + FC G V+KA + + ML++ + P E
Sbjct: 604 NSDEILKLISEMKGKGICPNVMTYNSLIKSFCERGMVNKAMPLLDEMLQNEIVPNITSFE 663
Query: 462 ALLR 465
L++
Sbjct: 664 LLIK 667
>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic [Vitis vinifera]
Length = 1022
Score = 39.7 bits (91), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 71/161 (44%), Gaps = 4/161 (2%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
+ G +++ ++ + +N + R G+ AF + M+S GI P +Y
Sbjct: 679 IEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSS 738
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
+ CN G ++ A + + M + G+ P AL+ + G+ D+V +L ++ +
Sbjct: 739 LIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYD 798
Query: 488 RKVSPSTADVIAKWF----NSKEAARLGKKKWNESLIKDTM 524
+ T V+ + + K AA+L + + ++ DT+
Sbjct: 799 IHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTV 839
>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
Length = 886
Score = 39.7 bits (91), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 54/131 (41%)
Query: 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415
E L K Q + +M ++P N + GD A D++K+MK
Sbjct: 640 ETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLLKQMKE 699
Query: 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475
GI P + ++ ++ C GD+ +A +V + M + G+ P L++ DR
Sbjct: 700 DGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWARVSLPDR 759
Query: 476 VYYLLHKLRTS 486
+++++
Sbjct: 760 ALKCFEEMKSA 770
Score = 39.3 bits (90), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
F F I+E M + + A + MG+ D A + +RM+ + P R++ P
Sbjct: 477 FANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRP 536
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
+ F GD+ +A + M G P AL+ V + ++ +L K+ S+
Sbjct: 537 IIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKM--SI 594
Query: 488 RKVSPS 493
++P+
Sbjct: 595 AGIAPN 600
Score = 39.3 bits (90), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 370 RGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
R I+E+M + + P N + A++ GD AFD + M+ G P + +Y
Sbjct: 514 RAIRIFERMQKERMQPSNRTFRPIIEGFAVA-GDMKRAFDTLDLMRRSGCAPTVMTYNAL 572
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
+ V+KA SV + M G+ P E ++R +G + + K++ S
Sbjct: 573 IHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGL 632
Query: 489 KV 490
K+
Sbjct: 633 KL 634
>gi|449433429|ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g16890, mitochondrial-like
[Cucumis sativus]
Length = 688
Score = 39.7 bits (91), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A +M + + + GI+P + +Y + FC NG++DKA + E +LE P+ +L
Sbjct: 482 DRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSL 541
Query: 464 LRVSVEAGKGDRVY 477
+ +A K + +
Sbjct: 542 IDGLCQAHKHENAF 555
>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 39.7 bits (91), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++ K+M S G+ P LR+Y L C +G +++A + M E + P+ L++
Sbjct: 315 AQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQ 374
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWF----NSKEAARLGKKKWNESLIK 521
AGK + L KL + + S T +++ K S EA +L +K ++ +
Sbjct: 375 GMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLP 434
Query: 522 DT 523
D+
Sbjct: 435 DS 436
>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
Length = 794
Score = 39.7 bits (91), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 41/107 (38%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
+Y +M N A+ + G A M M GI P ++ Y LS
Sbjct: 191 ALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLS 250
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY 477
CN G +D+A + M + G P+E A L + G+ + +
Sbjct: 251 SLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAF 297
>gi|110740599|dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]
Length = 546
Score = 39.7 bits (91), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/156 (17%), Positives = 69/156 (44%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
F ++ M ++ N + + ++ + + A ++V+ M+S GI P +Y
Sbjct: 249 FGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYST 308
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
+S++ G +D+A ++ + + GV ++ + ++ G LLH+L+
Sbjct: 309 IISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPD 368
Query: 488 RKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDT 523
+ ++AK ++EA + ++ + +KD
Sbjct: 369 NIPRETAITILAKAGRTEEATWVFRQAFESGEVKDI 404
>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
Length = 558
Score = 39.7 bits (91), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 10/131 (7%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ G E++ +M + + + T + + GD D A + K+M S G+ P + +Y
Sbjct: 341 EDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSIL 400
Query: 429 LSVFCNNGDVDKACSVEEHM----LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
L CNNG ++KA V ++M ++ +Y +E + + AGK D + L L
Sbjct: 401 LDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK----AGKVDDGWDLFCSL- 455
Query: 485 TSVRKVSPSTA 495
S++ V P+
Sbjct: 456 -SLKGVKPNVV 465
>gi|299469706|emb|CBN76560.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 915
Score = 39.7 bits (91), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
MKS GI + SYG A+S GDV A + + M E GV P + L AGK
Sbjct: 494 MKSRGIGMDVVSYGTAVSACAKAGDVKGALKLLKEMQEAGVEPNTVVYNSALDACGRAGK 553
Query: 473 GDRVYYLLHKLRTS--VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTM 524
LL K+ + VR + T ++A N L +W E++ K+ +
Sbjct: 554 PKVAEKLLRKMGETGVVRDATSYTGAIVACSRNGDGDKAL---EWLETMSKEGI 604
>gi|297840237|ref|XP_002888000.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333841|gb|EFH64259.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 189
Score = 39.7 bits (91), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Query: 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431
E++ +M + + + T + + GD DMA ++ K M S G+ P L +Y L
Sbjct: 1 MELFREMSQRGLVGDTVTYTTLIQGLFQAGDCDMAQELFKEMVSDGVPPNLMTYNSLLDG 60
Query: 432 FCNNGDVDKACSVEE---------HMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
CNNG ++K V + + GV P ++ G Y LL K
Sbjct: 61 LCNNGKLEKTLVVGKVEDGWDLFCSLSLKGVKPNVVTYNTMISGLCRKGLNQEAYALLKK 120
Query: 483 LR 484
++
Sbjct: 121 MK 122
>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 412
Score = 39.7 bits (91), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Query: 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMK 414
+ + L + K Y F+ FE Y ++ +D L G++ ++A++ K++
Sbjct: 290 EAMELFNELKSYNFKLDFESYSRL-ID-------GLCKAGKV-------EIAWEFFKQLS 334
Query: 415 SLGINPRLRSYGPALSVFCNNGDVDKACSV---EEHMLEHGVYPEEPELEALLRVSVEAG 471
G+ P + + + FC VDKA + E M E+G P+ LLR E+
Sbjct: 335 QEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESN 394
Query: 472 KGDRVYYLLHKLRTSVR 488
K + V LLHK+ +R
Sbjct: 395 KLEEVVNLLHKMFKRMR 411
>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 834
Score = 39.7 bits (91), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G+G A M+++M S GI P ++ LS + G V+ E ML G+ PE
Sbjct: 635 GEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHY 694
Query: 461 EALLRVSVEAGKGDRVYYLLHKLRT 485
++ + AG+ ++ L+ K+ T
Sbjct: 695 VCMVSLLGRAGRLNKARELIEKMPT 719
>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 754
Score = 39.7 bits (91), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 343 RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD 402
+++ W N+ I +S ++ ++ EI+E+M VP + S TA+ G
Sbjct: 133 QRQIWCKPNEHIYTIIISLLGREGLLEKSTEIFEEMPTHGVPRSVFSYTALINSYGRHGQ 192
Query: 403 GDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV--DKACSVEEHMLEHGVYPEEPEL 460
+++ ++++RMK + P + +Y ++ C G + + S+ M G+ P+
Sbjct: 193 YEVSLELLERMKKEKVTPSILTYNTVINS-CARGGLNWEGLLSLFAEMRHEGIQPDIITY 251
Query: 461 EALLRVSVEAGKGD 474
LL G GD
Sbjct: 252 NTLLNACANRGLGD 265
>gi|356563135|ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Glycine max]
Length = 635
Score = 39.7 bits (91), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%)
Query: 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV 444
+++A + R G D A +V M++ G P +Y + FC +D+AC V
Sbjct: 373 LSKAIYDGIHRSLSGAGKLDEAESIVNHMRNAGYEPDNITYNQTIFGFCKMRKLDEACKV 432
Query: 445 EEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
E M G PE L++ A + DR L+++
Sbjct: 433 LEEMESCGFIPEIKTWTILIQGHCVANEVDRALLCLNRM 471
>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
Length = 762
Score = 39.7 bits (91), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 4/178 (2%)
Query: 353 DADEIRLSEDAKKYA----FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFD 408
D DE+ + Y F+++ M V N + TA+ GD A +
Sbjct: 431 DVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANE 490
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468
++ M + G+ +Y ++ C G +D+A M G+ P+ L+
Sbjct: 491 LLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALC 550
Query: 469 EAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
++G+ DR + LL ++ + K + T +V+ F GKK L K+ N
Sbjct: 551 KSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPN 608
>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic [Vitis vinifera]
Length = 867
Score = 39.7 bits (91), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD--KACSVE 445
A ++A GR G D A + + MKS G+ P L +Y + C G VD +A +
Sbjct: 225 ALISAYGRS----GYCDEAIKVFETMKSSGLKPNLVTYNAVIDA-CGKGGVDFNRAAEIF 279
Query: 446 EHMLEHGVYPEEPELEALLRVSVEAG 471
+ ML +GV P+ +LL V G
Sbjct: 280 DEMLRNGVQPDRITFNSLLAVCGRGG 305
>gi|147791424|emb|CAN76851.1| hypothetical protein VITISV_005999 [Vitis vinifera]
Length = 383
Score = 39.7 bits (91), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468
+V+ M++ GI P S+ + FCN+G VD+A + M E+ P++ L+ +
Sbjct: 258 LVEEMQTKGIKPDGYSFNALIKGFCNDGKVDEATNWYGKMRENDCSPDKLTFATLVPLYC 317
Query: 469 EAGKGDRVYYLLHKL 483
E G D+ + L ++
Sbjct: 318 EKGSFDQAFELCKEI 332
>gi|297812073|ref|XP_002873920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319757|gb|EFH50179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 483
Score = 39.7 bits (91), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 45/115 (39%)
Query: 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMV 410
N+ A + + K+ G Y +M + S V R S G D AF++
Sbjct: 352 NEFAYNVMMHGHFKRGEISLGEAFYNEMLRNGYGETTLSCNTVIRGLCSHGKSDEAFEIF 411
Query: 411 KRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
K+M G+ P +Y + C V+K + + + G+ P AL+R
Sbjct: 412 KKMSETGVTPNAITYNALIKGLCKENKVEKGMKLYKELKALGLKPSGAAYAALVR 466
>gi|449503889|ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Cucumis sativus]
Length = 697
Score = 39.7 bits (91), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A +M + + + GI+P + +Y + FC NG++DKA + E +LE P+ +L
Sbjct: 491 DRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSL 550
Query: 464 LRVSVEAGKGDRVY 477
+ +A K + +
Sbjct: 551 IDGLCQAHKHENAF 564
>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
Length = 794
Score = 39.7 bits (91), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 41/107 (38%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
+Y +M N A+ + G A M M GI P ++ Y LS
Sbjct: 191 ALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLS 250
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY 477
CN G +D+A + M + G P+E A L + G+ + +
Sbjct: 251 SLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAF 297
>gi|359496216|ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial [Vitis vinifera]
Length = 383
Score = 39.7 bits (91), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468
+V+ M++ GI P S+ + FCN+G VD+A + M E+ P++ L+ +
Sbjct: 258 LVEEMQTKGIKPDGYSFNALIKGFCNDGKVDEATNWYGKMRENDCSPDKLTFATLVPLYC 317
Query: 469 EAGKGDRVYYLLHKL 483
E G D+ + L ++
Sbjct: 318 EKGSFDQAFELCKEI 332
>gi|9755668|emb|CAC01820.1| putative protein [Arabidopsis thaliana]
Length = 532
Score = 39.7 bits (91), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 47/106 (44%)
Query: 403 GDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462
G+ F+++ +M+ +G P + +Y + C D D + + M E V P+
Sbjct: 381 GEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIV 440
Query: 463 LLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAA 508
++ GK + Y +++ + + + D+I WF+ K+ A
Sbjct: 441 MIHGLFLNGKIEEAYGYYKEMKDKGMRPNENVEDMIQSWFSGKQYA 486
>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Vitis vinifera]
Length = 877
Score = 39.7 bits (91), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%)
Query: 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443
PMN T++ + + G+ D A ++ ++ G+ P +Y + CN+G+++KA
Sbjct: 362 PMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASE 421
Query: 444 VEEHMLEHGVYPEEPELEALLRVSVEA 470
+ M +G+ P + +LLR ++A
Sbjct: 422 LYTQMKLNGIPPSVFNVNSLLRGYLKA 448
>gi|449457341|ref|XP_004146407.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial-like [Cucumis sativus]
gi|449523938|ref|XP_004168980.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial-like [Cucumis sativus]
Length = 506
Score = 39.7 bits (91), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
+++ D +K+MK LGI+P + +Y + C+ G ++ ++ E M+ G+ P
Sbjct: 300 ELSLDKLKQMKELGISPTVATYTSVIKCLCSCGRLEDGENLIEEMVRSGISPSPTTYNCF 359
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKEAARLGKKKWN---ES 518
+ G L K+R +PS T +++ F + + K+ WN ES
Sbjct: 360 FKEYRGRKDGAGALRLYKKMREDCL-CAPSLHTYNILLALFLNLDKKETLKELWNDMKES 418
Query: 519 LIKDTMENKGGGWHGL 534
+ +++ HGL
Sbjct: 419 GVGPDLDSYTTIIHGL 434
>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
Length = 1013
Score = 39.7 bits (91), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456
G+ + A D+++ M + G+ P Y P +S +C G+V AC + + M + V P+
Sbjct: 468 GEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPD 523
>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Glycine max]
Length = 729
Score = 39.7 bits (91), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 64/173 (36%), Gaps = 13/173 (7%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMA-------FDMVKRMKSLGINPRLR 423
+++E M +P + AS + + R GD DMA F+ + G P
Sbjct: 381 ALKVFESMKKFRIPADSASYSTLIRSLCQKGDYDMAEQLFDELFEKEILLSKFGSKPLAA 440
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
SY P C +G KA V +++ G + ++ E L+ L
Sbjct: 441 SYNPIFESLCEHGKTKKAERVIRQLMKRGTQDPQSYTTVIMGHCKEGAYESGYELLMWML 500
Query: 484 RTSVRKVSP--STADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
R R P D + F K+ L K+ E ++K + + K WH +
Sbjct: 501 R---RDFLPDIEIYDYLIDGFLQKDKPLLAKETL-EKMLKSSYQPKTSTWHSV 549
>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
Length = 745
Score = 39.7 bits (91), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+GD + A + KR++ I P + ++ + FC N V +A + E + HG+ P
Sbjct: 444 LGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVT 503
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495
L+ E G ++++ LL L +++ + P+
Sbjct: 504 YTTLMNAYCEEGNINKLHELL--LEMNLKDIEPTVV 537
>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 859
Score = 39.7 bits (91), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 406 AFDMVKRMKSLG--INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
A DMV+RM G +P + S+ + F G+V KAC++ M++ GV P+ ++
Sbjct: 246 ALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSI 305
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNS----KEAARLGKKKWNESL 519
+ +A D+ +L ++ + T I ++ KE+A++ +K ++ L
Sbjct: 306 VDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGL 365
Query: 520 I 520
I
Sbjct: 366 I 366
>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 819
Score = 39.7 bits (91), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 70/155 (45%), Gaps = 4/155 (2%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433
++ K+ ++V ++ + G+ AF + M+S I+P + +Y + C
Sbjct: 614 LFNKLVYNKVELSYVVYNILIAAHSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMC 673
Query: 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493
N V++A + E M G+ P AL+ + G+ D++ +L ++ ++ + +
Sbjct: 674 CNDLVEEAKGIFEEMRNEGLMPNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKI 733
Query: 494 TADVI----AKWFNSKEAARLGKKKWNESLIKDTM 524
T ++ K N+KEA +L + + DT+
Sbjct: 734 TYTIMIDGYCKMGNTKEATKLLNEMIANGISPDTV 768
>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
Length = 713
Score = 39.7 bits (91), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
LS AK + + ++M + V NE S TA+ GD + AF M +RMK +
Sbjct: 453 LSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENL 512
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453
+ +YG L C +G + +A V + + + G+
Sbjct: 513 AIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGL 547
>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 39.7 bits (91), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 72/163 (44%), Gaps = 8/163 (4%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
+ G +++ ++ + +N + R G+ AF + M+S GI P +Y
Sbjct: 612 IEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSS 671
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487
+ CN G ++ A + + M + G+ P AL+ + G+ D+V +L ++ S
Sbjct: 672 LIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEM--SS 729
Query: 488 RKVSPS------TADVIAKWFNSKEAARLGKKKWNESLIKDTM 524
+ P+ D +K + K AA+L + + ++ DT+
Sbjct: 730 YDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTV 772
>gi|407850326|gb|EKG04756.1| hypothetical protein TCSYLVIO_004182 [Trypanosoma cruzi]
Length = 794
Score = 39.7 bits (91), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 68/148 (45%), Gaps = 4/148 (2%)
Query: 340 DQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKM--CLDEVPMNEASLTAVGRM 396
+++RK++ S+ N ++ +K +QR F +Y+++ + VP + T +G
Sbjct: 118 EEARKENRSVQPNLTTYQMLFRACERKGQYQRAFLLYKQLRELMHIVPDSPTYDTLLGFC 177
Query: 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456
A ++ D A ++ MK G+ P + +Y +SV + + V M+E G+ P
Sbjct: 178 A-ALRDVAQASYFIEEMKQNGVTPNVNTYNCLMSVLVESAPYSETLRVFMQMIEKGIKPT 236
Query: 457 EPELEALLRVSVEAGKGDRVYYLLHKLR 484
L + + G DR + L +++
Sbjct: 237 IRTYNTLSKAARIHGDYDRAFQLFEEMK 264
>gi|357129672|ref|XP_003566485.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like, partial [Brachypodium distachyon]
Length = 564
Score = 39.7 bits (91), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
D+A+ + RM+ LG+ + +Y ++ C G +A V E MLE G YP
Sbjct: 166 DLAYKEILRMRELGVEADVGTYSTLVTGLCRVGRTGEAWGVLEWMLEEGCYP 217
>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 625
Score = 39.7 bits (91), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 58/131 (44%)
Query: 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRM 413
A + L+ AK +++Y+KM V N + GD + A +++ M
Sbjct: 167 ACTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEM 226
Query: 414 KSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473
+S + P L +Y +S++C G +A SV++ M G+ P+ +L+ + G+
Sbjct: 227 ESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRM 286
Query: 474 DRVYYLLHKLR 484
L ++R
Sbjct: 287 REAMRLFKEIR 297
>gi|413934769|gb|AFW69320.1| hypothetical protein ZEAMMB73_542469 [Zea mays]
Length = 539
Score = 39.7 bits (91), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 54/119 (45%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
F ++ EK L V N ++ ++ GD A ++K M GI+P R+Y
Sbjct: 269 FGDAHKVLEKFPLYGVAPNISTFNSLVFGYCRHGDLAGASRVLKAMLGRGISPTARTYNY 328
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
+VF N +D ++ M+ +G P+ L+++ EA + + +L ++R S
Sbjct: 329 FFTVFARNLSIDLGMNLYVKMVSNGYAPDRLTYHLLIKMLCEANRLELTLQMLQEMRNS 387
>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
turbinata]
Length = 413
Score = 39.7 bits (91), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
E++++M + + N + T + G D+A ++ KRM S + P L +Y +
Sbjct: 215 ELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGL 274
Query: 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY 477
C NGD+ +A + + M G+ P++ L+ + G D +
Sbjct: 275 CKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAF 319
>gi|223635627|sp|Q9SZ20.2|PP339_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g26800
Length = 514
Score = 39.7 bits (91), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
G ++ + M V N S + + G D+A + M S G+ P +RSY L+
Sbjct: 352 GIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLA 411
Query: 431 VFCNNGDVDKACSVEEHM 448
NG+V+KA S EHM
Sbjct: 412 GLFANGEVEKALSRFEHM 429
>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
Length = 540
Score = 39.7 bits (91), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Query: 340 DQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS 399
D+ RK + + D I L+ K + + ++++M D + T + M S
Sbjct: 388 DEMRKSGIGPNTRTYD-IILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCS 446
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
DMA + K+MK G+ P + + ++ C + +++AC + ML+ G+ P
Sbjct: 447 NERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFDNRLEEACVYFQEMLDKGIRPPGQL 506
Query: 460 LEALLRVSVEAGK 472
L VE G+
Sbjct: 507 FSNLKEALVEGGR 519
>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
Length = 812
Score = 39.7 bits (91), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 41/107 (38%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
+Y +M N A+ + G A M M GI P ++ Y LS
Sbjct: 191 ALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLS 250
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY 477
CN G +D+A + M + G P+E A L + G+ + +
Sbjct: 251 SLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAF 297
>gi|452822176|gb|EME29198.1| hypothetical protein Gasu_34000 [Galdieria sulphuraria]
Length = 338
Score = 39.7 bits (91), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 670 WKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDF---FPRWKERH 726
W++ L TP DD Y L+ A + L+V+ND DH Q ++ +W R
Sbjct: 250 WRDTHRLILTPVDDYDDSYMLFYAQRHSGLIVSNDRFLDHMEQTSVDEQKRKLAKWLSRC 309
Query: 727 QVRFSFSD----AGPEFYMPPPCSVV 748
+V F F D P F M C +
Sbjct: 310 RVTFVFGDNEFIPNPSFNMAAACEYI 335
>gi|308804632|ref|XP_003079628.1| FOG: PPR repeat (ISS) [Ostreococcus tauri]
gi|116058084|emb|CAL53273.1| FOG: PPR repeat (ISS) [Ostreococcus tauri]
Length = 616
Score = 39.7 bits (91), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423
K+Y F + E +E++ + N S T + A + + + K M+ G+ P
Sbjct: 132 KQYGFAK--EAFERIARSGLTPNVYSYTNMLNAATRVSEVGQMRKIWKEMRDAGVEPNEV 189
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+Y + C G++D+A + M++ GV P + LLR V G + + +
Sbjct: 190 AYTVLVKGECQAGNIDRAREIVREMIDGGVEPNQRTYGTLLRNCVRYGDVENAAKFVQTM 249
Query: 484 R 484
R
Sbjct: 250 R 250
>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
Length = 698
Score = 39.7 bits (91), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463
D A +M+ +MK P +Y + C +GDV+ A + + MLE G P+ L
Sbjct: 451 DCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNIL 510
Query: 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAK 500
+ +AG D +L + +S R V S D + K
Sbjct: 511 ISGLCKAGNTDAACGVLDDMSSS-RFVYSSLVDGLCK 546
>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
Length = 596
Score = 39.7 bits (91), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 10/131 (7%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ G E++ +M + + + T + + GD D A + K+M S G+ P + +Y
Sbjct: 379 EDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSIL 438
Query: 429 LSVFCNNGDVDKACSVEEHM----LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
L CNNG ++KA V ++M ++ +Y +E + + AGK D + L L
Sbjct: 439 LDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK----AGKVDDGWDLFCSL- 493
Query: 485 TSVRKVSPSTA 495
S++ V P+
Sbjct: 494 -SLKGVKPNVV 503
>gi|344288831|ref|XP_003416150.1| PREDICTED: leucine-rich PPR motif-containing protein, mitochondrial
[Loxodonta africana]
Length = 1395
Score = 39.7 bits (91), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 1/124 (0%)
Query: 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441
++P+ EA +A+ GD + A +++ MK GI P +Y L+ + GD+D+
Sbjct: 229 DLPVTEAVFSALVTGHARAGDMENAENIITVMKEAGIEPGPDTYLALLNAYAEKGDIDRV 288
Query: 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKW 501
E + + +Y + +L ++ +AG V +L K+ R + P ++I
Sbjct: 289 KQTLEKVKKSDIYLMDRDLLQVIFAFSKAGYPQYVSEILEKMTYEGRYI-PDAMNLILLL 347
Query: 502 FNSK 505
K
Sbjct: 348 VTEK 351
>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
Length = 855
Score = 39.7 bits (91), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
GF+I E+M + A+ + +G D A+++ +RM+ G ++ +
Sbjct: 143 GFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIE 202
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474
N+G +D+AC + M+E G P ++L+ +AGK D
Sbjct: 203 ALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVD 246
>gi|347954470|gb|AEP33735.1| chlororespiratory reduction 21, partial [Olimarabidopsis pumila]
Length = 811
Score = 39.7 bits (91), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 6/160 (3%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
++ +M L+ VP N + + + G+ + A +M +M+S GI+P L S+ ++
Sbjct: 440 ALRLFYEMQLESVPPNVITWNLIILSLLRNGEVNEAKEMFLQMQSSGISPNLISWTTMMN 499
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK---GDRVY-YLLHKLR-T 485
NG ++A M E G+ P + L S G ++ Y++ LR +
Sbjct: 500 GMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSASANLASLHFGRSIHGYIIRNLRHS 559
Query: 486 SVRKVSPSTADVIAKWFNSKEAARL-GKKKWNESLIKDTM 524
S + S D+ AK + +A R+ G K ++E + + M
Sbjct: 560 SSVSIETSLVDMYAKCGDINKAERVFGSKLYSELPLYNAM 599
>gi|297842513|ref|XP_002889138.1| hypothetical protein ARALYDRAFT_476899 [Arabidopsis lyrata subsp.
lyrata]
gi|297334979|gb|EFH65397.1| hypothetical protein ARALYDRAFT_476899 [Arabidopsis lyrata subsp.
lyrata]
Length = 382
Score = 39.7 bits (91), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++ K+M GI P + Y + FC+ +D+A + +HM E+G+ P AL++
Sbjct: 219 ALNLFKQMSESGIKPDVYMYTVLIQSFCSGDTLDEASGLLDHMFENGLMPNFITYNALIK 278
>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
Length = 504
Score = 39.3 bits (90), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 401 GDGDMAFDMVKRMKSLGIN-PRLRSYGPALSVFCNNGDVDKACSVEEHML-EHGVYPEEP 458
GD AF++VK MKS ++ P L +Y + C NG + +A E M+ + + P+
Sbjct: 204 GDLQAAFEVVKEMKSARVSYPNLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDAL 263
Query: 459 ELEALLRVSVEAGKGDRVYYLLHKLRTS 486
L+ + GK DR +L ++++
Sbjct: 264 TYNILINGFCQRGKVDRARTILEFMKSN 291
>gi|15241801|ref|NP_201043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180621|sp|Q9LVA2.1|PP443_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g62370
gi|8809650|dbj|BAA97201.1| unnamed protein product [Arabidopsis thaliana]
gi|332010218|gb|AED97601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 982
Score = 39.3 bits (90), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 1/123 (0%)
Query: 380 LDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439
LD VP + L V + D D AF ++ M+ LG+ P + Y + G V
Sbjct: 541 LDFVPDVDTYLIVVNELCKK-NDRDAAFAIIDAMEELGLRPTVAIYSSIIGSLGKQGRVV 599
Query: 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIA 499
+A MLE G+ P+E ++ G+ D L+ ++ + S T V+
Sbjct: 600 EAEETFAKMLESGIQPDEIAYMIMINTYARNGRIDEANELVEEVVKHFLRPSSFTYTVLI 659
Query: 500 KWF 502
F
Sbjct: 660 SGF 662
>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
Length = 1025
Score = 39.3 bits (90), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 6/139 (4%)
Query: 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEK 377
+GH++ +L D RG DD + + N +S+ + +R E+ +
Sbjct: 167 SGHVRRAQELFD----WLRGLDDS--HDLYPLCNTMTYTTMISQCGTQQQLRRALELVAE 220
Query: 378 MCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437
M + N + +A+ + + + D+A D+ ++M + G P L +Y + V+ G
Sbjct: 221 MRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLIDVYGKTGA 280
Query: 438 VDKACSVEEHMLEHGVYPE 456
++A V + + G+ PE
Sbjct: 281 WEEAIRVLDALERQGIDPE 299
>gi|302809819|ref|XP_002986602.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
gi|300145785|gb|EFJ12459.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
Length = 445
Score = 39.3 bits (90), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 397 AMSMGDG-----DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451
AM+ G G D AF+++ M+S G ++ P + C +G D+AC V E ML
Sbjct: 123 AMATGLGKAGLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGRPDEACKVMETMLLR 182
Query: 452 GVYPEEPELEALLRVSVEAGK 472
+ P L +L +A +
Sbjct: 183 NIEPNILTLNLILHAFCKAAR 203
>gi|255548349|ref|XP_002515231.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545711|gb|EEF47215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 505
Score = 39.3 bits (90), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 413 MKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
M+ LGI P + SY + V+C + +++KA V E M E + P+ +++ G+
Sbjct: 233 MRELGIKPDVVSYNSLIDVYCKDREMEKAYKVVEKMREEDISPDVITYTSIIGGLGLVGQ 292
Query: 473 GDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKG 528
D+ +L++++ P A A N A RLG + S + D M +KG
Sbjct: 293 PDKARDILNEMKEY--GCYPDVAAYNAVIRNYCIAKRLG----DASNLMDEMASKG 342
>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 806
Score = 39.3 bits (90), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/119 (18%), Positives = 56/119 (47%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
+ E++E + + ++ ++ + + D A+D+ + G+ P +++Y
Sbjct: 518 LEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNV 577
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
+S FC + A + M ++G P+ L+R ++AG+ D+ L+ ++R++
Sbjct: 578 MISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSN 636
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 39.3 bits (90), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 6/134 (4%)
Query: 327 LLDGRSNLERGPDDQSRKKDWSIDNQDADEI-----RLSEDAKKYAFQRGFEIYEKMCLD 381
+++G S +R DD R + +DN A + L K + + E+M +
Sbjct: 50 MINGLSKSDR-LDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMR 108
Query: 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441
P + S T V + D A ++ +M G P + +YG + FC GD+D A
Sbjct: 109 GCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGA 168
Query: 442 CSVEEHMLEHGVYP 455
+ M E G P
Sbjct: 169 VELVRKMTERGYRP 182
>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
Length = 563
Score = 39.3 bits (90), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
+RG +++ KM +V N+ + T + MG ++ ++MK GI P + +Y
Sbjct: 215 IERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNS 274
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGV 453
+ CN+G ++ A + + M E GV
Sbjct: 275 MICRCCNDGKLNNAFELFDEMRERGV 300
>gi|224144893|ref|XP_002325452.1| predicted protein [Populus trichocarpa]
gi|222862327|gb|EEE99833.1| predicted protein [Populus trichocarpa]
Length = 864
Score = 39.3 bits (90), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A++++ +MK G++P Y +S G+ +A M+ G+ P+ L+
Sbjct: 699 AYEILSKMKDSGLDPDASLYNTLISGHGKIGNKKEAIKFYCEMVTKGLVPKTSTYNVLIE 758
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSP--STADV-IAKWFN---SKEAARLGKKKW 515
+ GK D+ LL++++ VR+V P ST D+ I W N E R+ KK +
Sbjct: 759 DFAKVGKMDQARELLNEMQ--VRRVPPNSSTYDILICGWCNLSKQPELDRISKKTY 812
>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 39.3 bits (90), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM----LEHGVYPE 456
GD D A + K+M S G+ P + +Y L CNNG ++KA V ++M ++ +Y
Sbjct: 374 GDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIY 433
Query: 457 EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495
+E + + AGK D + L L S++ V P+
Sbjct: 434 TTMIEGMCK----AGKVDDGWDLFCSL--SLKGVKPNVV 466
>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
Length = 768
Score = 39.3 bits (90), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 7/142 (4%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A ++ +M G+ P +Y L+ FC GD+ KA + + M G P+ L+
Sbjct: 537 AAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLIS 596
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTAD-VIAKWFN---SKEAARLGKKKWNESLIK 521
+AG+ LL ++ ++P + VI F + EA RL ++ ++S
Sbjct: 597 GLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPP 656
Query: 522 DTMENK---GGGWHGLGWLGKG 540
D + K G +G G +G+
Sbjct: 657 DAITYKIVYRGLCNGGGPIGEA 678
>gi|212274769|ref|NP_001130292.1| uncharacterized protein LOC100191386 [Zea mays]
gi|194688764|gb|ACF78466.1| unknown [Zea mays]
Length = 510
Score = 39.3 bits (90), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468
+V+ M+++G+ P +Y LS++ G +D+A + E + E G +P L + V+
Sbjct: 253 LVQEMQAIGVQPDAITYSTILSIWVKAGKLDRAARLFEKLREAGT-EIDPVLYQTMVVAY 311
Query: 469 E-AGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDT 523
E AG + LL L+ + ++A +EAA L ++ N IKD+
Sbjct: 312 ERAGLASQAKRLLRDLKDPEGIPKETAIKILASAGRLEEAAWLFRRAVNTGEIKDS 367
>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 634
Score = 39.3 bits (90), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 10/129 (7%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
G E++ +M + + + T + + GD D A + K+M S G+ P + +Y L
Sbjct: 419 GTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLD 478
Query: 431 VFCNNGDVDKACSVEEHM----LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
CNNG ++KA V ++M ++ +Y +E + + AGK D + L L S
Sbjct: 479 GLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK----AGKVDDGWDLFCSL--S 532
Query: 487 VRKVSPSTA 495
++ V P+
Sbjct: 533 LKGVKPNVV 541
>gi|326500578|dbj|BAK06378.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 546
Score = 39.3 bits (90), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 55/119 (46%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
F+ + + EK L V N ++ ++ GD A ++K M GI P ++Y
Sbjct: 277 FRDAYNLLEKFPLYGVAPNISTFNSLVLAYCKYGDLAGASGVLKAMMGRGILPTAKTYNY 336
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
F G+V+ ++ M+ +G P++ L+++ EA + + V ++ ++R +
Sbjct: 337 FFVFFAKTGNVELGMNLYNKMVNNGYAPDQTTYNLLVKMLCEANRLELVVQMIKEMRAN 395
>gi|334187687|ref|NP_197005.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635761|sp|Q9LFQ4.2|PP383_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g15010, mitochondrial; Flags: Precursor
gi|332004721|gb|AED92104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 572
Score = 39.3 bits (90), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 47/106 (44%)
Query: 403 GDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462
G+ F+++ +M+ +G P + +Y + C D D + + M E V P+
Sbjct: 421 GEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIV 480
Query: 463 LLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAA 508
++ GK + Y +++ + + + D+I WF+ K+ A
Sbjct: 481 MIHGLFLNGKIEEAYGYYKEMKDKGMRPNENVEDMIQSWFSGKQYA 526
>gi|255551050|ref|XP_002516573.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544393|gb|EEF45914.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 396
Score = 39.3 bits (90), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%)
Query: 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461
+ ++A +M+ M++ G+ P R+ G +S +C G + +A M E GV+P
Sbjct: 25 ETNLAEEMISEMQNTGVQPNERTCGTVISGYCKEGRIKEALRFVHRMKELGVHPNLVVFN 84
Query: 462 ALLR 465
+L++
Sbjct: 85 SLIK 88
>gi|297808179|ref|XP_002871973.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297317810|gb|EFH48232.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 831
Score = 39.3 bits (90), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457
+++ D D ++V M+ G+ P + ++ ++ + + GD+ + + MLE G+ P+
Sbjct: 577 LNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYRDMLEGGIDPDI 636
Query: 458 PELEALLRVSVEAGKGDRVYYLLHKLRT-SVRKVSPSTADVIAKWFNSKE 506
L + AG+ ++ +L+++R VR +I+ W ++ E
Sbjct: 637 HAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGE 686
>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
Length = 550
Score = 39.3 bits (90), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
+RG +++ KM +V N+ + T + MG ++ ++MK GI P + +Y
Sbjct: 202 IERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNS 261
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGV 453
+ CN+G ++ A + + M E GV
Sbjct: 262 MICRCCNDGKLNNAFELFDEMRERGV 287
>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 39.3 bits (90), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 42/81 (51%)
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
A +++K M++ G P + +Y +S + +G +D+A ++ M++ G+ P+ LL
Sbjct: 345 AMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLS 404
Query: 466 VSVEAGKGDRVYYLLHKLRTS 486
+ GK D + ++R +
Sbjct: 405 GFEKTGKDDYAMKVFEEMRVA 425
>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Vitis vinifera]
Length = 582
Score = 39.3 bits (90), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 1/127 (0%)
Query: 329 DGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA 388
+GR +L G D D + + I L+ K + EI+ K+ P N +
Sbjct: 360 EGRLDLAIGIMDYMISNGCLPDIVNYNTI-LAALCKNGNANQALEIFNKLRGMGCPPNVS 418
Query: 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448
S + S GD A MV M S G++P +Y +S C +G V++A + + M
Sbjct: 419 SYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDM 478
Query: 449 LEHGVYP 455
+ G P
Sbjct: 479 EQSGFRP 485
>gi|115456691|ref|NP_001051946.1| Os03g0856100 [Oryza sativa Japonica Group]
gi|41393252|gb|AAS01975.1| putative chloroplastic RNA-binding protein, with alternative
splicing isoforms [Oryza sativa Japonica Group]
gi|113550417|dbj|BAF13860.1| Os03g0856100 [Oryza sativa Japonica Group]
gi|222626198|gb|EEE60330.1| hypothetical protein OsJ_13428 [Oryza sativa Japonica Group]
Length = 640
Score = 39.3 bits (90), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 380 LDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438
L +VP ++ S TA+ + S GD D A + M GI P + SY + G +
Sbjct: 354 LGDVPKPDKWSYTAMINIYGSSGDADRALQLFAEMVESGIEPNIMSYTIVIQCLGKAGRI 413
Query: 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR---VYYLLHKLRTSVRKV 490
+A V E + G+ P++ LL V V GD + L K+R+++ K+
Sbjct: 414 QEAVDVLEAGMAKGLKPDDRLCGCLLSV-VALSSGDETEVILACLEKVRSNLVKL 467
>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
Length = 504
Score = 39.3 bits (90), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
++ I++ M E+ +N + T + + +G + AFD+ + S G+ P + +Y
Sbjct: 414 EKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTM 473
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEE 457
+S FC G + +A ++ + M E G P E
Sbjct: 474 ISGFCRRGFIHEADALFKKMKEDGFLPNE 502
>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Cucumis sativus]
gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Cucumis sativus]
Length = 720
Score = 39.3 bits (90), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 48/93 (51%)
Query: 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432
++YE++ D++ ++ L + GD + A + +++ G+NP+ ++ +S
Sbjct: 267 KLYEEIESDKIELDGLLLNDIILGFAKAGDPNRALYFLSMVQASGLNPKTSTFVAVISAL 326
Query: 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
N+G ++A ++ E M E G+ P ALL+
Sbjct: 327 GNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLK 359
>gi|347954466|gb|AEP33733.1| chlororespiratory reduction 21, partial [Lepidium sativum]
Length = 805
Score = 39.3 bits (90), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 6/160 (3%)
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
+++ M L+ VP N + ++ + G D A +M +M+S GI P L S+ ++
Sbjct: 438 ALKLFYDMLLESVPPNIITWNSIILSFLRNGQVDEAKEMFLQMQSSGIFPNLISWTTMMN 497
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR-----VSVEAGKGDRVYYLLHKLRT 485
+ NG ++A M E G+ P + L VS+ G+ Y + + +
Sbjct: 498 GWVQNGCSEEAIIFLRKMQESGLRPNAFTISVALSACTHLVSLNFGRSIHGYIIRNFQHS 557
Query: 486 SVRKVSPSTADVIAKWFNSKEAARL-GKKKWNESLIKDTM 524
S S D+ AK + +A ++ G K ++E + + M
Sbjct: 558 SSVSFETSLVDLYAKCGDINQAEKVFGNKLYDELPLHNAM 597
>gi|298712109|emb|CBJ32990.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 650
Score = 39.3 bits (90), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
LS AK ++ + ++M + V ++ + +A+ G+ ++++ M G+
Sbjct: 65 LSSIAKSGRWREALALRDRMLSEGVRLDGYTFSALIEACSKGGNVAKGVELLREMVDAGV 124
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478
SY AL F NGD A + E M+ GV P+ LL +G+
Sbjct: 125 ARDCFSYNAALHGFVRNGDSKNALLMLEDMVADGVRPDAITYGTLLACCGNSGEWKLCMS 184
Query: 479 LLHKLRT 485
L+ ++R+
Sbjct: 185 LMDRMRS 191
>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Vitis vinifera]
Length = 641
Score = 39.3 bits (90), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 64/140 (45%), Gaps = 7/140 (5%)
Query: 370 RGFEIYEKMCLD------EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423
RG ++ E +C P + S + R +G D AF++ M+ G +P +
Sbjct: 214 RGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVI 273
Query: 424 SYGPALSVFCNNGDVDKACSVEEHML-EHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
+Y ++ FC +VD+ + + +L ++ + P+ +++ + GK ++ L +
Sbjct: 274 TYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNN 333
Query: 483 LRTSVRKVSPSTADVIAKWF 502
+ +S K + T +++ F
Sbjct: 334 MISSGIKPNAFTFNILINGF 353
>gi|255661208|gb|ACU25773.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 426
Score = 39.3 bits (90), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%)
Query: 376 EKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435
+KM D VP + + + ++ + D A + R+K GI P L +Y ++VF
Sbjct: 33 QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRAGIKPDLVAYNSMINVFGKA 92
Query: 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
+A S+ M E GV P+ LL + VE K
Sbjct: 93 KLFREARSLISEMREAGVVPDTVSYSTLLTMYVENQK 129
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,545,848,566
Number of Sequences: 23463169
Number of extensions: 546563553
Number of successful extensions: 1493163
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 838
Number of HSP's that attempted gapping in prelim test: 1482788
Number of HSP's gapped (non-prelim): 10240
length of query: 796
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 645
effective length of database: 8,816,256,848
effective search space: 5686485666960
effective search space used: 5686485666960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 81 (35.8 bits)