Query 003768
Match_columns 796
No_of_seqs 601 out of 3368
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 11:41:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003768.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003768hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.4E-49 7.4E-54 481.3 30.0 539 53-645 378-957 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 4.3E-48 9.4E-53 471.7 27.8 349 146-556 435-800 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 2.3E-46 5E-51 460.2 24.3 397 147-612 151-594 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.4E-44 3.1E-49 434.7 30.7 416 147-636 86-556 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 8.4E-44 1.8E-48 437.5 30.2 309 146-508 251-606 (857)
6 PLN03081 pentatricopeptide (PP 100.0 1.1E-43 2.5E-48 426.9 19.2 383 144-602 154-558 (697)
7 PF11977 RNase_Zc3h12a: Zc3h12 99.8 5.6E-21 1.2E-25 185.8 4.5 127 606-738 4-140 (155)
8 PRK11788 tetratricopeptide rep 99.7 1.4E-14 2.9E-19 162.4 25.4 285 162-492 47-353 (389)
9 PRK11788 tetratricopeptide rep 99.5 9.9E-12 2.1E-16 139.3 30.0 250 200-510 44-301 (389)
10 TIGR02917 PEP_TPR_lipo putativ 99.4 3.1E-11 6.7E-16 148.3 30.2 303 160-511 407-723 (899)
11 TIGR02917 PEP_TPR_lipo putativ 99.4 4.9E-11 1.1E-15 146.5 31.2 277 192-511 602-891 (899)
12 PF13041 PPR_2: PPR repeat fam 99.3 2.9E-12 6.4E-17 99.8 6.8 49 189-237 1-49 (50)
13 KOG4422 Uncharacterized conser 99.3 6.4E-10 1.4E-14 118.8 24.2 220 192-485 117-341 (625)
14 PF13041 PPR_2: PPR repeat fam 99.3 4.6E-12 1E-16 98.7 5.8 49 385-433 1-49 (50)
15 KOG4422 Uncharacterized conser 99.1 1.3E-08 2.8E-13 109.0 20.5 235 192-487 208-463 (625)
16 PRK15174 Vi polysaccharide exp 99.0 6.5E-07 1.4E-11 107.3 32.0 280 159-486 51-347 (656)
17 KOG4318 Bicoid mRNA stability 98.9 4.6E-09 9.9E-14 120.9 12.7 244 171-472 11-286 (1088)
18 PRK15174 Vi polysaccharide exp 98.8 1.6E-06 3.5E-11 104.0 29.3 277 161-486 87-381 (656)
19 KOG4318 Bicoid mRNA stability 98.6 5.9E-07 1.3E-11 104.0 16.4 219 212-506 11-286 (1088)
20 PF12854 PPR_1: PPR repeat 98.6 4.4E-08 9.6E-13 69.5 4.0 32 382-413 2-33 (34)
21 PF12854 PPR_1: PPR repeat 98.6 3.8E-08 8.3E-13 69.9 3.5 32 417-448 2-33 (34)
22 PF13429 TPR_15: Tetratricopep 98.6 2.1E-07 4.6E-12 99.7 10.7 256 160-485 18-276 (280)
23 TIGR00990 3a0801s09 mitochondr 98.6 1.6E-05 3.5E-10 95.0 27.2 254 164-486 308-571 (615)
24 TIGR00990 3a0801s09 mitochondr 98.5 3.3E-05 7.1E-10 92.4 28.1 293 159-486 136-496 (615)
25 PRK10747 putative protoheme IX 98.5 3.6E-05 7.8E-10 87.0 25.5 268 163-482 97-386 (398)
26 PRK11447 cellulose synthase su 98.4 0.00011 2.3E-09 94.2 30.0 296 159-486 360-700 (1157)
27 TIGR02521 type_IV_pilW type IV 98.4 5.2E-05 1.1E-09 77.0 22.1 200 191-486 31-232 (234)
28 PRK10049 pgaA outer membrane p 98.4 0.00012 2.6E-09 89.7 28.7 282 159-486 58-388 (765)
29 TIGR02521 type_IV_pilW type IV 98.4 5.3E-05 1.1E-09 76.9 21.3 179 294-510 41-222 (234)
30 PRK11447 cellulose synthase su 98.3 6E-05 1.3E-09 96.5 25.4 250 196-485 466-739 (1157)
31 TIGR00540 hemY_coli hemY prote 98.3 0.00011 2.4E-09 83.4 24.7 273 161-482 95-395 (409)
32 PF13429 TPR_15: Tetratricopep 98.3 3.1E-06 6.8E-11 90.7 11.4 251 196-510 13-267 (280)
33 PRK10049 pgaA outer membrane p 98.2 0.00063 1.4E-08 83.5 29.7 286 159-486 92-422 (765)
34 KOG4626 O-linked N-acetylgluco 98.1 0.00016 3.5E-09 81.3 19.3 276 159-485 125-416 (966)
35 COG2956 Predicted N-acetylgluc 98.1 0.0015 3.2E-08 69.0 24.1 241 147-493 39-285 (389)
36 PRK14574 hmsH outer membrane p 98.1 0.00073 1.6E-08 82.4 25.3 286 160-486 112-445 (822)
37 TIGR00756 PPR pentatricopeptid 98.1 4.9E-06 1.1E-10 58.7 4.0 35 192-226 1-35 (35)
38 PRK09782 bacteriophage N4 rece 98.0 0.0015 3.1E-08 81.4 26.9 229 190-486 476-706 (987)
39 TIGR00756 PPR pentatricopeptid 98.0 1.2E-05 2.6E-10 56.7 4.7 33 424-456 2-34 (35)
40 PF13812 PPR_3: Pentatricopept 98.0 1E-05 2.2E-10 57.0 4.1 33 192-224 2-34 (34)
41 PRK10747 putative protoheme IX 97.9 0.0014 3E-08 74.2 21.9 219 159-449 162-388 (398)
42 PF13812 PPR_3: Pentatricopept 97.9 1.9E-05 4.2E-10 55.5 4.1 32 389-420 3-34 (34)
43 KOG1126 DNA-binding cell divis 97.9 0.0035 7.6E-08 71.9 24.0 274 166-493 335-625 (638)
44 PRK09782 bacteriophage N4 rece 97.8 0.0094 2E-07 74.4 29.8 148 356-510 546-696 (987)
45 KOG1840 Kinesin light chain [C 97.8 0.0015 3.2E-08 75.0 20.7 248 192-484 200-477 (508)
46 PRK14574 hmsH outer membrane p 97.8 0.005 1.1E-07 75.3 26.1 94 393-486 298-396 (822)
47 PF01535 PPR: PPR repeat; Int 97.7 3.8E-05 8.1E-10 52.7 3.1 31 192-222 1-31 (31)
48 PRK12370 invasion protein regu 97.7 0.0034 7.3E-08 74.2 21.3 240 189-485 254-501 (553)
49 PRK12370 invasion protein regu 97.7 0.0083 1.8E-07 70.9 24.4 247 166-486 277-535 (553)
50 TIGR00540 hemY_coli hemY prote 97.6 0.005 1.1E-07 69.9 21.1 255 152-448 120-396 (409)
51 KOG4626 O-linked N-acetylgluco 97.6 0.008 1.7E-07 68.2 21.1 245 192-486 117-383 (966)
52 PF01535 PPR: PPR repeat; Int 97.6 8.3E-05 1.8E-09 51.0 3.6 29 424-452 2-30 (31)
53 KOG2003 TPR repeat-containing 97.5 0.0058 1.3E-07 66.7 18.6 176 296-486 502-689 (840)
54 COG3071 HemY Uncharacterized e 97.5 0.035 7.7E-07 60.4 24.6 281 163-486 97-390 (400)
55 PF12569 NARP1: NMDA receptor- 97.4 0.1 2.2E-06 60.7 28.7 277 157-503 11-308 (517)
56 PF08579 RPM2: Mitochondrial r 97.4 0.0012 2.6E-08 59.6 9.5 79 391-469 29-116 (120)
57 KOG1840 Kinesin light chain [C 97.3 0.0072 1.6E-07 69.5 17.3 240 159-449 208-477 (508)
58 PF10037 MRP-S27: Mitochondria 97.2 0.0018 3.9E-08 72.7 10.8 115 356-470 70-186 (429)
59 PF08579 RPM2: Mitochondrial r 97.2 0.0018 3.9E-08 58.4 8.5 80 356-435 29-117 (120)
60 PF10037 MRP-S27: Mitochondria 97.1 0.0053 1.2E-07 69.0 13.4 131 374-504 50-186 (429)
61 PF06239 ECSIT: Evolutionarily 97.1 0.0037 8E-08 63.1 10.2 90 384-473 44-154 (228)
62 COG2956 Predicted N-acetylgluc 97.0 0.19 4E-06 53.6 22.3 255 159-486 78-347 (389)
63 KOG2076 RNA polymerase III tra 96.9 0.24 5.2E-06 59.1 24.0 288 160-485 217-554 (895)
64 KOG1155 Anaphase-promoting com 96.8 0.43 9.4E-06 53.2 24.0 250 165-485 242-494 (559)
65 KOG1126 DNA-binding cell divis 96.7 0.13 2.7E-06 59.6 19.8 240 162-452 365-621 (638)
66 PF04733 Coatomer_E: Coatomer 96.7 0.028 6E-07 60.7 14.1 126 356-486 135-265 (290)
67 PF12569 NARP1: NMDA receptor- 96.7 0.32 6.9E-06 56.6 23.2 244 200-511 13-282 (517)
68 PF09295 ChAPs: ChAPs (Chs5p-A 96.6 0.038 8.2E-07 61.9 14.9 123 357-486 174-297 (395)
69 PF04733 Coatomer_E: Coatomer 96.6 0.02 4.4E-07 61.7 12.4 201 188-451 63-265 (290)
70 PRK11189 lipoprotein NlpI; Pro 96.6 0.3 6.5E-06 52.9 21.4 217 204-486 39-265 (296)
71 KOG2002 TPR-containing nuclear 96.6 0.38 8.2E-06 58.0 23.0 303 159-506 422-765 (1018)
72 cd05804 StaR_like StaR_like; a 96.6 0.35 7.7E-06 53.2 22.3 230 199-486 51-293 (355)
73 COG3071 HemY Uncharacterized e 96.6 0.37 7.9E-06 52.8 21.1 220 160-451 163-390 (400)
74 PF06239 ECSIT: Evolutionarily 96.4 0.015 3.4E-07 58.7 9.2 94 356-449 51-166 (228)
75 KOG2003 TPR repeat-containing 96.4 0.094 2E-06 57.6 15.5 124 356-484 596-720 (840)
76 KOG2076 RNA polymerase III tra 96.4 1.3 2.7E-05 53.3 25.7 281 159-484 149-510 (895)
77 COG3063 PilF Tfp pilus assembl 96.3 0.77 1.7E-05 47.0 20.2 195 196-450 40-235 (250)
78 KOG1129 TPR repeat-containing 96.2 0.29 6.3E-06 52.2 17.3 245 179-486 211-458 (478)
79 PRK11189 lipoprotein NlpI; Pro 96.2 0.52 1.1E-05 51.0 20.4 227 165-462 41-275 (296)
80 TIGR03302 OM_YfiO outer membra 96.2 0.24 5.3E-06 51.2 17.0 160 294-486 43-232 (235)
81 KOG4340 Uncharacterized conser 96.1 0.21 4.6E-06 52.5 15.5 246 160-448 88-336 (459)
82 cd05804 StaR_like StaR_like; a 95.9 0.96 2.1E-05 49.8 21.6 90 393-483 120-212 (355)
83 KOG3785 Uncharacterized conser 95.9 0.066 1.4E-06 57.3 11.0 135 356-497 363-499 (557)
84 PF05843 Suf: Suppressor of fo 95.9 0.088 1.9E-06 56.5 12.5 127 356-486 5-136 (280)
85 TIGR02552 LcrH_SycD type III s 95.8 0.18 3.9E-06 47.1 13.0 91 358-450 23-113 (135)
86 TIGR02552 LcrH_SycD type III s 95.8 0.3 6.6E-06 45.6 14.5 99 386-486 16-114 (135)
87 KOG1128 Uncharacterized conser 95.8 0.36 7.8E-06 56.5 17.3 224 159-467 407-633 (777)
88 cd00189 TPR Tetratricopeptide 95.8 0.14 3.1E-06 42.6 11.0 90 393-484 6-95 (100)
89 COG3063 PilF Tfp pilus assembl 95.7 0.62 1.4E-05 47.7 16.7 147 358-507 41-189 (250)
90 TIGR03302 OM_YfiO outer membra 95.7 1.1 2.3E-05 46.4 19.5 60 392-451 171-232 (235)
91 PRK10370 formate-dependent nit 95.7 0.5 1.1E-05 48.0 16.3 127 365-498 52-184 (198)
92 KOG1915 Cell cycle control pro 95.5 5 0.00011 45.1 23.8 280 160-486 151-466 (677)
93 PRK15359 type III secretion sy 95.5 0.27 5.8E-06 47.1 12.9 92 393-486 30-121 (144)
94 cd00189 TPR Tetratricopeptide 95.5 0.18 3.9E-06 41.9 10.6 94 356-451 4-97 (100)
95 KOG0547 Translocase of outer m 95.4 2.2 4.8E-05 48.1 20.9 121 360-486 436-566 (606)
96 COG4783 Putative Zn-dependent 95.4 3.4 7.4E-05 46.6 22.6 117 356-493 344-461 (484)
97 PRK15359 type III secretion sy 95.3 0.46 9.9E-06 45.6 13.9 102 358-463 30-131 (144)
98 KOG3616 Selective LIM binding 95.3 0.14 3.1E-06 59.2 11.4 106 356-481 769-874 (1636)
99 PF09976 TPR_21: Tetratricopep 95.2 0.37 7.9E-06 46.1 13.0 124 356-482 16-143 (145)
100 PF09295 ChAPs: ChAPs (Chs5p-A 95.2 0.18 4E-06 56.5 12.1 117 294-450 179-296 (395)
101 PF12921 ATP13: Mitochondrial 95.1 0.17 3.8E-06 47.4 9.9 98 386-503 1-99 (126)
102 TIGR02795 tol_pal_ybgF tol-pal 95.0 0.4 8.7E-06 43.2 12.1 95 390-486 5-105 (119)
103 KOG4340 Uncharacterized conser 95.0 0.83 1.8E-05 48.2 15.1 278 192-511 11-330 (459)
104 COG5010 TadD Flp pilus assembl 94.9 0.78 1.7E-05 47.7 14.8 125 356-483 104-228 (257)
105 KOG1070 rRNA processing protei 94.8 2 4.3E-05 54.0 19.9 226 191-479 1458-1693(1710)
106 KOG1156 N-terminal acetyltrans 94.8 4.4 9.6E-05 47.2 21.6 285 156-486 191-511 (700)
107 KOG1070 rRNA processing protei 94.8 3.5 7.7E-05 51.9 21.9 203 248-504 1470-1680(1710)
108 KOG3941 Intermediate in Toll s 94.8 0.23 5E-06 51.9 10.4 102 384-485 64-187 (406)
109 KOG2002 TPR-containing nuclear 94.8 3.3 7.1E-05 50.3 21.2 290 162-489 464-801 (1018)
110 KOG3616 Selective LIM binding 94.8 0.66 1.4E-05 54.0 14.9 159 197-410 738-905 (1636)
111 KOG3777 Uncharacterized conser 94.7 0.019 4E-07 64.1 2.6 103 604-713 12-124 (443)
112 KOG3081 Vesicle coat complex C 94.6 1.8 3.9E-05 45.3 16.3 121 361-486 146-271 (299)
113 PRK04841 transcriptional regul 94.3 7.5 0.00016 48.8 24.8 275 162-486 421-720 (903)
114 KOG0495 HAT repeat protein [RN 94.3 14 0.00029 43.5 23.7 277 160-486 560-880 (913)
115 PF14938 SNAP: Soluble NSF att 94.2 2 4.4E-05 46.0 17.0 112 366-478 129-255 (282)
116 KOG0495 HAT repeat protein [RN 94.2 15 0.00032 43.2 28.4 189 359-559 591-817 (913)
117 KOG3081 Vesicle coat complex C 94.2 0.71 1.5E-05 48.2 12.4 136 360-506 116-256 (299)
118 PF12921 ATP13: Mitochondrial 94.2 0.36 7.9E-06 45.2 9.6 57 416-472 46-103 (126)
119 PRK14720 transcript cleavage f 94.2 6.9 0.00015 48.4 22.8 218 188-486 28-252 (906)
120 KOG3785 Uncharacterized conser 94.2 1.2 2.7E-05 48.0 14.4 98 358-460 399-497 (557)
121 KOG1173 Anaphase-promoting com 94.1 3.3 7.2E-05 47.5 18.5 47 190-237 243-289 (611)
122 KOG1155 Anaphase-promoting com 94.1 11 0.00023 42.6 21.9 127 356-486 334-461 (559)
123 TIGR02795 tol_pal_ybgF tol-pal 94.1 0.88 1.9E-05 40.9 12.0 95 356-452 6-106 (119)
124 PLN03088 SGT1, suppressor of 94.0 0.75 1.6E-05 51.2 13.5 102 360-466 10-112 (356)
125 KOG1129 TPR repeat-containing 93.9 0.59 1.3E-05 49.9 11.3 154 294-486 233-387 (478)
126 PRK15179 Vi polysaccharide bio 93.8 1.6 3.6E-05 52.7 16.6 126 356-486 90-217 (694)
127 PRK04841 transcriptional regul 93.5 5 0.00011 50.3 21.3 272 161-486 463-760 (903)
128 PRK10370 formate-dependent nit 93.5 1.2 2.6E-05 45.2 12.9 107 356-466 77-186 (198)
129 KOG2047 mRNA splicing factor [ 93.5 8 0.00017 45.2 20.2 296 163-485 360-686 (835)
130 KOG3617 WD40 and TPR repeat-co 93.4 1.6 3.5E-05 51.7 14.8 237 161-483 739-993 (1416)
131 KOG0985 Vesicle coat protein c 93.4 3.8 8.2E-05 49.9 17.9 180 227-482 1105-1304(1666)
132 KOG2376 Signal recognition par 93.3 11 0.00024 43.7 20.7 136 367-505 356-506 (652)
133 PF14559 TPR_19: Tetratricopep 93.2 0.24 5.2E-06 40.3 5.9 22 428-449 31-52 (68)
134 KOG1128 Uncharacterized conser 93.0 1.6 3.4E-05 51.4 13.9 197 248-486 410-616 (777)
135 KOG2376 Signal recognition par 92.7 7.3 0.00016 45.0 18.4 117 358-486 18-139 (652)
136 PRK15179 Vi polysaccharide bio 92.5 3 6.5E-05 50.5 16.2 133 294-464 96-229 (694)
137 PF04840 Vps16_C: Vps16, C-ter 92.5 8.1 0.00017 42.3 18.2 104 357-480 182-285 (319)
138 KOG1538 Uncharacterized conser 92.4 7.2 0.00016 45.4 17.7 87 389-486 749-846 (1081)
139 PRK02603 photosystem I assembl 92.4 3 6.6E-05 41.0 13.7 58 358-415 41-100 (172)
140 PRK02603 photosystem I assembl 92.4 3.6 7.8E-05 40.4 14.2 111 386-502 34-161 (172)
141 KOG0985 Vesicle coat protein c 92.3 5.3 0.00012 48.7 17.1 251 170-483 967-1220(1666)
142 PF12895 Apc3: Anaphase-promot 92.3 0.15 3.3E-06 43.8 3.7 79 366-447 3-83 (84)
143 PF14559 TPR_19: Tetratricopep 92.2 0.34 7.3E-06 39.4 5.6 64 363-429 2-65 (68)
144 PRK10153 DNA-binding transcrip 92.0 5.3 0.00011 46.8 17.0 138 356-499 341-493 (517)
145 KOG1914 mRNA cleavage and poly 92.0 8.4 0.00018 44.2 17.5 127 356-486 370-501 (656)
146 KOG1914 mRNA cleavage and poly 91.9 3.9 8.5E-05 46.7 14.9 123 368-497 347-477 (656)
147 PF05843 Suf: Suppressor of fo 91.8 0.69 1.5E-05 49.6 8.8 143 280-467 3-150 (280)
148 KOG1156 N-terminal acetyltrans 91.7 33 0.00072 40.3 22.2 59 426-486 375-434 (700)
149 PF12895 Apc3: Anaphase-promot 91.6 0.29 6.3E-06 41.9 4.7 80 400-482 2-83 (84)
150 PF03704 BTAD: Bacterial trans 91.4 0.92 2E-05 43.2 8.5 70 389-459 64-138 (146)
151 PLN03088 SGT1, suppressor of 91.3 3 6.6E-05 46.4 13.6 99 394-497 9-108 (356)
152 PLN02789 farnesyltranstransfer 91.3 26 0.00057 38.4 22.4 209 199-470 45-268 (320)
153 PF03704 BTAD: Bacterial trans 91.1 0.64 1.4E-05 44.3 7.0 68 356-424 66-138 (146)
154 KOG3941 Intermediate in Toll s 91.0 0.58 1.3E-05 49.1 6.7 85 365-449 85-186 (406)
155 COG4783 Putative Zn-dependent 90.9 6 0.00013 44.8 15.0 116 364-483 318-434 (484)
156 COG5107 RNA14 Pre-mRNA 3'-end 90.7 3.6 7.7E-05 46.0 12.7 136 356-497 401-540 (660)
157 PF09976 TPR_21: Tetratricopep 90.6 1.5 3.3E-05 41.8 9.2 88 358-447 54-143 (145)
158 KOG2047 mRNA splicing factor [ 90.6 41 0.0009 39.6 23.4 26 281-312 251-276 (835)
159 CHL00033 ycf3 photosystem I as 90.5 4.3 9.2E-05 39.7 12.4 57 359-415 42-100 (168)
160 PF14938 SNAP: Soluble NSF att 90.0 12 0.00026 40.1 16.4 114 357-487 99-226 (282)
161 KOG1915 Cell cycle control pro 89.6 42 0.00091 38.2 22.3 257 190-503 321-604 (677)
162 PRK10803 tol-pal system protei 89.3 7.9 0.00017 41.2 14.0 103 387-493 143-251 (263)
163 CHL00033 ycf3 photosystem I as 89.2 5.3 0.00012 39.0 11.9 111 371-482 18-138 (168)
164 PF12688 TPR_5: Tetratrico pep 88.9 11 0.00023 35.0 12.9 102 361-468 10-117 (120)
165 smart00299 CLH Clathrin heavy 88.8 14 0.0003 34.7 14.2 110 356-482 11-121 (140)
166 KOG2053 Mitochondrial inherita 88.5 20 0.00043 43.5 17.5 69 160-237 53-121 (932)
167 KOG0547 Translocase of outer m 88.4 52 0.0011 37.6 20.0 142 364-511 338-482 (606)
168 KOG2053 Mitochondrial inherita 88.1 9 0.0002 46.3 14.4 135 361-503 18-156 (932)
169 KOG3617 WD40 and TPR repeat-co 88.0 50 0.0011 40.0 19.9 158 296-483 924-1106(1416)
170 PF13170 DUF4003: Protein of u 88.0 3.6 7.8E-05 44.5 10.5 157 299-485 77-249 (297)
171 KOG2796 Uncharacterized conser 87.9 8.4 0.00018 40.4 12.3 135 356-495 181-322 (366)
172 PF13432 TPR_16: Tetratricopep 87.6 2.3 5E-05 34.2 6.8 54 361-415 6-59 (65)
173 COG5010 TadD Flp pilus assembl 87.3 19 0.00042 37.6 14.7 124 364-493 78-202 (257)
174 PRK10866 outer membrane biogen 86.7 42 0.00092 35.1 17.5 58 428-485 181-240 (243)
175 PRK15363 pathogenicity island 86.5 9 0.00019 37.3 11.1 86 362-449 45-130 (157)
176 PF13170 DUF4003: Protein of u 86.4 13 0.00028 40.2 13.7 134 367-502 77-229 (297)
177 PF13432 TPR_16: Tetratricopep 86.3 2.8 6.2E-05 33.6 6.7 54 431-486 6-60 (65)
178 KOG1174 Anaphase-promoting com 85.9 65 0.0014 36.1 19.6 251 195-486 198-467 (564)
179 KOG3060 Uncharacterized conser 85.3 53 0.0011 34.5 16.8 118 365-486 99-220 (289)
180 KOG2297 Predicted translation 85.0 31 0.00068 37.0 14.9 54 83-137 33-86 (412)
181 PF13371 TPR_9: Tetratricopept 84.3 6 0.00013 32.4 7.9 54 431-486 4-58 (73)
182 COG5107 RNA14 Pre-mRNA 3'-end 83.8 15 0.00033 41.2 12.5 146 279-469 398-547 (660)
183 PF13371 TPR_9: Tetratricopept 83.4 7.2 0.00016 31.9 8.0 55 396-451 4-58 (73)
184 PF12688 TPR_5: Tetratrico pep 83.0 18 0.00039 33.6 11.1 90 394-485 8-103 (120)
185 PLN03098 LPA1 LOW PSII ACCUMUL 82.2 18 0.00039 41.0 12.7 63 386-450 74-140 (453)
186 PF13424 TPR_12: Tetratricopep 81.9 3.1 6.8E-05 34.7 5.3 60 388-447 6-71 (78)
187 PRK10803 tol-pal system protei 81.5 15 0.00032 39.1 11.4 93 356-452 147-247 (263)
188 KOG1538 Uncharacterized conser 80.4 17 0.00036 42.5 11.6 85 393-486 709-802 (1081)
189 PRK14720 transcript cleavage f 79.8 26 0.00056 43.6 13.9 126 354-486 33-178 (906)
190 PF13929 mRNA_stabil: mRNA sta 79.7 26 0.00055 37.5 12.1 141 364-504 140-290 (292)
191 KOG3060 Uncharacterized conser 79.2 89 0.0019 32.9 16.9 156 295-486 23-183 (289)
192 KOG1173 Anaphase-promoting com 79.1 1.4E+02 0.0029 35.0 19.0 244 159-470 253-535 (611)
193 PF05991 NYN_YacP: YacP-like N 78.0 5.4 0.00012 39.3 6.3 110 607-726 1-130 (166)
194 PF13414 TPR_11: TPR repeat; P 76.2 11 0.00023 30.5 6.7 59 389-448 5-64 (69)
195 KOG4570 Uncharacterized conser 76.0 26 0.00055 37.8 10.7 104 381-486 58-164 (418)
196 PF14626 RNase_Zc3h12a_2: Zc3h 75.7 9.7 0.00021 34.9 6.5 72 640-711 22-98 (122)
197 PRK15363 pathogenicity island 75.0 36 0.00077 33.2 10.7 92 392-486 40-132 (157)
198 KOG1920 IkappaB kinase complex 74.9 1.1E+02 0.0025 38.6 17.1 156 296-486 863-1028(1265)
199 PF09205 DUF1955: Domain of un 74.7 24 0.00052 33.3 9.0 59 358-417 92-150 (161)
200 PLN02789 farnesyltranstransfer 74.3 92 0.002 34.1 15.3 128 356-486 41-171 (320)
201 PF13762 MNE1: Mitochondrial s 74.3 67 0.0015 30.9 12.3 103 374-476 24-134 (145)
202 PRK10153 DNA-binding transcrip 73.8 26 0.00057 41.1 11.5 89 368-460 400-489 (517)
203 PLN03098 LPA1 LOW PSII ACCUMUL 73.3 30 0.00065 39.4 11.1 59 356-416 79-141 (453)
204 PF13929 mRNA_stabil: mRNA sta 72.5 85 0.0018 33.7 13.6 102 367-468 181-289 (292)
205 PF13424 TPR_12: Tetratricopep 72.2 7.8 0.00017 32.2 5.0 62 423-484 6-73 (78)
206 PF13414 TPR_11: TPR repeat; P 72.1 9.5 0.0002 30.8 5.4 59 356-415 7-66 (69)
207 COG3898 Uncharacterized membra 71.1 1.8E+02 0.0039 32.6 17.0 101 192-320 119-225 (531)
208 KOG2280 Vacuolar assembly/sort 70.8 1.2E+02 0.0025 36.7 15.4 104 358-480 690-793 (829)
209 PF04840 Vps16_C: Vps16, C-ter 70.8 39 0.00084 37.0 11.2 97 324-447 190-287 (319)
210 PF13525 YfiO: Outer membrane 70.6 93 0.002 31.4 13.4 73 160-237 15-88 (203)
211 COG3629 DnrI DNA-binding trans 70.3 35 0.00075 36.5 10.4 58 426-484 157-214 (280)
212 PF04053 Coatomer_WDAD: Coatom 70.0 21 0.00046 40.9 9.3 103 360-483 326-428 (443)
213 PF07035 Mic1: Colon cancer-as 69.8 93 0.002 30.7 12.5 102 372-483 14-115 (167)
214 PF09613 HrpB1_HrpK: Bacterial 68.2 1.1E+02 0.0025 29.8 12.5 98 399-504 22-122 (160)
215 PF09613 HrpB1_HrpK: Bacterial 68.1 1.2E+02 0.0027 29.6 12.9 108 361-476 19-128 (160)
216 KOG4570 Uncharacterized conser 68.0 21 0.00045 38.5 7.9 55 362-416 110-164 (418)
217 PF10300 DUF3808: Protein of u 67.9 1.2E+02 0.0026 35.1 15.1 118 365-485 246-375 (468)
218 PF09205 DUF1955: Domain of un 67.4 1.2E+02 0.0025 28.9 12.8 118 365-486 15-149 (161)
219 PF07035 Mic1: Colon cancer-as 67.2 1.3E+02 0.0029 29.6 13.4 134 304-486 14-149 (167)
220 KOG0553 TPR repeat-containing 66.9 57 0.0012 35.0 10.9 95 363-462 92-187 (304)
221 smart00299 CLH Clathrin heavy 63.9 52 0.0011 30.8 9.4 88 390-485 10-97 (140)
222 PF13512 TPR_18: Tetratricopep 63.1 92 0.002 29.8 10.6 76 363-438 21-98 (142)
223 COG3629 DnrI DNA-binding trans 63.0 37 0.00079 36.4 8.8 80 387-467 153-237 (280)
224 COG0735 Fur Fe2+/Zn2+ uptake r 62.8 47 0.001 31.8 8.9 62 443-505 7-69 (145)
225 PRK15331 chaperone protein Sic 62.3 81 0.0018 31.0 10.3 87 362-450 47-133 (165)
226 KOG4162 Predicted calmodulin-b 62.3 3.2E+02 0.007 33.2 16.8 62 188-260 320-381 (799)
227 PF10602 RPN7: 26S proteasome 62.0 1E+02 0.0022 30.6 11.4 97 388-486 37-142 (177)
228 COG3118 Thioredoxin domain-con 61.6 1.7E+02 0.0038 31.5 13.3 139 361-503 143-283 (304)
229 KOG0276 Vesicle coat complex C 61.2 27 0.00059 40.7 7.7 103 360-483 645-747 (794)
230 PF13176 TPR_7: Tetratricopept 60.8 18 0.00038 25.5 4.2 25 389-413 1-25 (36)
231 PRK10866 outer membrane biogen 60.4 2.2E+02 0.0048 29.7 20.0 188 160-413 42-238 (243)
232 PF00637 Clathrin: Region in C 60.1 3.8 8.3E-05 38.7 0.8 86 356-448 11-96 (143)
233 KOG4162 Predicted calmodulin-b 59.2 3.7E+02 0.008 32.7 16.6 80 403-484 460-540 (799)
234 COG4700 Uncharacterized protei 58.3 2.1E+02 0.0046 28.9 14.0 126 356-485 93-225 (251)
235 PF13512 TPR_18: Tetratricopep 56.2 80 0.0017 30.2 8.9 75 396-471 19-96 (142)
236 KOG2041 WD40 repeat protein [G 56.0 3.6E+02 0.0078 32.5 15.5 91 383-486 848-952 (1189)
237 PHA02875 ankyrin repeat protei 53.7 3.6E+02 0.0078 30.2 19.2 207 171-458 16-231 (413)
238 PF10602 RPN7: 26S proteasome 53.3 1E+02 0.0022 30.6 9.8 92 356-449 40-140 (177)
239 KOG0553 TPR repeat-containing 52.0 1.5E+02 0.0033 31.9 11.0 110 370-497 76-187 (304)
240 COG1729 Uncharacterized protei 51.9 1.6E+02 0.0036 31.1 11.2 100 389-493 144-249 (262)
241 PF00637 Clathrin: Region in C 51.7 3.5 7.5E-05 39.0 -1.0 88 392-486 12-99 (143)
242 PF13176 TPR_7: Tetratricopept 51.2 29 0.00064 24.4 4.0 26 193-218 1-26 (36)
243 PF13525 YfiO: Outer membrane 50.6 2.8E+02 0.006 27.9 15.0 21 200-220 14-34 (203)
244 PF13374 TPR_10: Tetratricopep 49.8 37 0.00079 23.9 4.5 27 388-414 3-29 (42)
245 PF10300 DUF3808: Protein of u 48.5 2.9E+02 0.0064 31.9 13.9 144 357-503 193-350 (468)
246 PHA02875 ankyrin repeat protei 48.5 2.1E+02 0.0045 32.2 12.6 112 356-480 103-222 (413)
247 PF11207 DUF2989: Protein of u 47.7 1.1E+02 0.0024 31.0 8.9 77 364-442 119-198 (203)
248 KOG2041 WD40 repeat protein [G 47.2 88 0.0019 37.3 8.9 22 7-28 405-426 (1189)
249 PF04053 Coatomer_WDAD: Coatom 47.2 1.2E+02 0.0026 34.9 10.2 77 356-447 351-427 (443)
250 PF11848 DUF3368: Domain of un 47.1 55 0.0012 25.0 5.2 38 198-235 9-46 (48)
251 cd00923 Cyt_c_Oxidase_Va Cytoc 45.2 1.1E+02 0.0024 27.3 7.3 31 452-482 37-67 (103)
252 PF13762 MNE1: Mitochondrial s 44.6 77 0.0017 30.5 6.9 84 152-238 43-127 (145)
253 PF13281 DUF4071: Domain of un 44.6 5E+02 0.011 29.1 18.7 32 187-220 139-170 (374)
254 COG4235 Cytochrome c biogenesi 44.3 4.4E+02 0.0095 28.4 13.2 101 384-486 153-256 (287)
255 KOG1125 TPR repeat-containing 44.3 6E+02 0.013 30.0 16.1 112 367-483 409-524 (579)
256 TIGR02561 HrpB1_HrpK type III 44.3 3E+02 0.0065 26.7 10.7 75 365-444 23-98 (153)
257 KOG0548 Molecular co-chaperone 43.1 6E+02 0.013 29.7 15.4 111 294-416 308-421 (539)
258 KOG4555 TPR repeat-containing 43.0 3E+02 0.0064 26.2 10.1 89 361-452 52-145 (175)
259 KOG2796 Uncharacterized conser 42.8 1.7E+02 0.0037 31.0 9.5 104 357-465 217-327 (366)
260 PRK10564 maltose regulon perip 42.8 40 0.00086 36.3 5.1 49 185-233 250-299 (303)
261 PF13428 TPR_14: Tetratricopep 42.6 47 0.001 24.4 4.2 28 389-416 3-30 (44)
262 KOG0543 FKBP-type peptidyl-pro 42.0 2.8E+02 0.006 31.2 11.5 124 360-486 216-355 (397)
263 PF02284 COX5A: Cytochrome c o 41.7 1.2E+02 0.0026 27.4 7.0 60 370-430 28-87 (108)
264 COG1729 Uncharacterized protei 40.2 3.1E+02 0.0068 29.1 11.2 95 356-451 146-244 (262)
265 PF13374 TPR_10: Tetratricopep 40.2 63 0.0014 22.6 4.5 28 192-219 3-30 (42)
266 PF10366 Vps39_1: Vacuolar sor 39.5 1.6E+02 0.0034 26.8 7.8 27 459-485 41-67 (108)
267 PF11663 Toxin_YhaV: Toxin wit 39.4 36 0.00078 32.1 3.7 35 159-201 104-138 (140)
268 COG4235 Cytochrome c biogenesi 39.4 5.2E+02 0.011 27.9 13.0 111 352-466 156-269 (287)
269 COG3118 Thioredoxin domain-con 39.3 5.3E+02 0.011 27.9 14.4 117 356-476 172-291 (304)
270 KOG1920 IkappaB kinase complex 38.9 2.5E+02 0.0055 35.7 11.6 76 360-446 973-1050(1265)
271 PHA03100 ankyrin repeat protei 38.8 4.1E+02 0.0089 30.3 13.4 30 194-227 35-64 (480)
272 PF02284 COX5A: Cytochrome c o 38.8 1.6E+02 0.0035 26.6 7.4 47 440-486 28-74 (108)
273 PF04184 ST7: ST7 protein; In 38.6 7E+02 0.015 29.1 15.1 76 361-436 268-345 (539)
274 PF11838 ERAP1_C: ERAP1-like C 37.5 3.5E+02 0.0076 29.0 11.9 94 356-452 133-231 (324)
275 COG4455 ImpE Protein of avirul 36.9 1.3E+02 0.0029 31.0 7.4 74 356-430 5-80 (273)
276 PF11848 DUF3368: Domain of un 36.9 1E+02 0.0022 23.5 5.3 26 470-495 15-40 (48)
277 PF11663 Toxin_YhaV: Toxin wit 36.7 32 0.0007 32.5 2.9 33 203-237 107-139 (140)
278 cd00923 Cyt_c_Oxidase_Va Cytoc 36.5 1.6E+02 0.0036 26.3 7.0 45 370-414 25-69 (103)
279 KOG1174 Anaphase-promoting com 36.1 7E+02 0.015 28.4 20.5 270 163-486 209-500 (564)
280 PF07079 DUF1347: Protein of u 35.9 1.2E+02 0.0026 34.5 7.6 90 160-262 16-105 (549)
281 PF12796 Ank_2: Ankyrin repeat 35.5 1.2E+02 0.0025 25.6 6.2 26 393-422 29-54 (89)
282 PF08631 SPO22: Meiosis protei 35.3 5.7E+02 0.012 27.1 15.3 122 363-486 4-150 (278)
283 PF13428 TPR_14: Tetratricopep 34.7 74 0.0016 23.3 4.2 28 459-486 3-30 (44)
284 PF04184 ST7: ST7 protein; In 34.1 3E+02 0.0066 31.9 10.4 73 392-464 264-338 (539)
285 PF09868 DUF2095: Uncharacteri 32.9 1.4E+02 0.0031 27.3 6.2 27 356-382 65-91 (128)
286 PF11207 DUF2989: Protein of u 32.1 2.4E+02 0.0053 28.7 8.4 78 399-478 119-199 (203)
287 KOG0550 Molecular chaperone (D 31.5 7.8E+02 0.017 28.0 12.7 54 362-415 259-315 (486)
288 COG4455 ImpE Protein of avirul 31.3 2.9E+02 0.0064 28.6 8.8 76 390-466 4-81 (273)
289 KOG1127 TPR repeat-containing 31.1 1.2E+03 0.026 29.6 15.9 224 197-482 465-696 (1238)
290 KOG1125 TPR repeat-containing 31.0 9.5E+02 0.021 28.4 21.3 251 159-478 294-563 (579)
291 PRK15331 chaperone protein Sic 31.0 2.8E+02 0.006 27.3 8.4 88 396-486 46-134 (165)
292 TIGR03504 FimV_Cterm FimV C-te 30.8 78 0.0017 23.8 3.6 24 393-416 5-28 (44)
293 KOG1585 Protein required for f 30.2 3.3E+02 0.0072 28.7 9.1 90 390-480 153-250 (308)
294 TIGR02561 HrpB1_HrpK type III 30.1 5.2E+02 0.011 25.1 13.8 95 399-502 22-120 (153)
295 PF13281 DUF4071: Domain of un 29.8 3.9E+02 0.0084 30.0 10.4 76 392-467 146-227 (374)
296 KOG0543 FKBP-type peptidyl-pro 29.6 4.3E+02 0.0093 29.8 10.5 106 396-504 217-337 (397)
297 COG4105 ComL DNA uptake lipopr 29.2 7.1E+02 0.015 26.3 17.7 160 295-486 45-233 (254)
298 PRK11906 transcriptional regul 28.3 4.8E+02 0.01 30.0 10.8 111 366-482 318-432 (458)
299 TIGR02508 type_III_yscG type I 28.0 4.6E+02 0.0099 23.8 8.3 46 435-486 52-97 (115)
300 PF11846 DUF3366: Domain of un 27.9 1.9E+02 0.0041 28.8 7.2 34 453-486 140-173 (193)
301 KOG1127 TPR repeat-containing 27.6 6.6E+02 0.014 31.8 12.3 128 356-486 496-625 (1238)
302 PF07721 TPR_4: Tetratricopept 26.8 94 0.002 20.1 3.1 20 392-411 6-25 (26)
303 PF10475 DUF2450: Protein of u 26.6 5.9E+02 0.013 27.3 11.1 112 357-479 103-219 (291)
304 PF06844 DUF1244: Protein of u 26.2 15 0.00033 29.9 -0.9 37 689-729 20-56 (68)
305 COG2351 Transthyretin-like pro 26.2 50 0.0011 30.3 2.2 29 734-762 80-112 (124)
306 TIGR00305 probable toxin-antit 25.8 54 0.0012 29.7 2.5 23 682-704 85-108 (114)
307 TIGR02508 type_III_yscG type I 25.1 4.2E+02 0.0091 24.0 7.6 86 367-460 20-105 (115)
308 PF10366 Vps39_1: Vacuolar sor 24.9 3.2E+02 0.0069 24.7 7.3 26 390-415 42-67 (108)
309 PRK10564 maltose regulon perip 24.9 1.2E+02 0.0026 32.8 5.1 43 383-425 252-295 (303)
310 COG2178 Predicted RNA-binding 24.8 4.5E+02 0.0097 26.7 8.7 108 368-485 19-149 (204)
311 PF00515 TPR_1: Tetratricopept 24.7 1.8E+02 0.0039 19.4 4.5 27 389-415 3-29 (34)
312 COG2178 Predicted RNA-binding 24.5 6.5E+02 0.014 25.6 9.8 90 360-450 37-149 (204)
313 KOG0781 Signal recognition par 24.4 5.4E+02 0.012 29.8 10.2 36 474-511 296-332 (587)
314 KOG2610 Uncharacterized conser 24.3 6.8E+02 0.015 27.7 10.5 181 284-482 76-272 (491)
315 COG0457 NrfG FOG: TPR repeat [ 24.2 5.9E+02 0.013 23.7 15.4 130 356-486 63-196 (291)
316 KOG2908 26S proteasome regulat 24.1 5.8E+02 0.013 28.2 10.0 86 357-442 80-177 (380)
317 PRK07764 DNA polymerase III su 23.1 1.3E+03 0.027 29.0 14.2 110 369-504 182-293 (824)
318 COG1569 Predicted nucleic acid 23.0 1.4E+02 0.003 28.4 4.6 41 665-705 65-113 (142)
319 PF11846 DUF3366: Domain of un 23.0 2.4E+02 0.0053 28.0 6.9 59 392-450 113-172 (193)
320 KOG1130 Predicted G-alpha GTPa 22.8 5E+02 0.011 29.4 9.3 125 361-485 204-343 (639)
321 PRK14956 DNA polymerase III su 21.8 1.3E+03 0.028 26.9 14.6 111 370-506 184-296 (484)
322 PF02847 MA3: MA3 domain; Int 21.5 1.6E+02 0.0036 26.3 4.8 61 356-418 6-68 (113)
323 smart00544 MA3 Domain in DAP-5 21.3 4.7E+02 0.01 23.3 7.9 98 389-486 4-105 (113)
324 PF08631 SPO22: Meiosis protei 20.8 1E+03 0.022 25.2 20.2 153 356-511 88-266 (278)
325 TIGR03504 FimV_Cterm FimV C-te 20.1 1.9E+02 0.0041 21.8 3.9 25 428-452 5-29 (44)
326 PF09670 Cas_Cas02710: CRISPR- 20.0 1.2E+03 0.025 26.2 12.1 55 361-416 140-198 (379)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.4e-49 Score=481.35 Aligned_cols=539 Identities=11% Similarity=0.090 Sum_probs=395.8
Q ss_pred HHHhhccccccccccccc-cccc-cceeeeeecccccccccCCCchhhhccccccccccccccccchhhhhhhhhccCCc
Q 003768 53 VFKAHVRNTQAKLSTTET-EHET-STVTLRTRKGTASGASSLGTRDKRVDSAGEEKDGKRLTKDNNSRKNFAFLKSREMS 130 (796)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (796)
.......+...++.+-|. +..+ ...+..+...........|........+..-.. -....|..-.-.+++.|...
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a~~k~g~~e 454 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCASSQDID 454 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHhCcCHH
Confidence 333333445556656555 2222 233333333334444444544444333321111 11223333444555666666
Q ss_pred cCCCCCccccccccccccchhhhhhhhhHhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003768 131 SGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGA 210 (796)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A 210 (796)
.+...+.............++|..+. .+++.++.++|.++|++|.+.| +.||+++||+||.+|++.|++++|
T Consensus 455 ~A~~lf~~M~~~Gl~pD~~tynsLI~--~y~k~G~vd~A~~vf~eM~~~G------v~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 455 GALRVLRLVQEAGLKADCKLYTTLIS--TCAKSGKVDAMFEVFHEMVNAG------VEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHCcCHHHH
Confidence 55555555555555667778888888 8899999999999999996544 667779999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhcc-CCCC-CcchhhhcccCc
Q 003768 211 IRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-RDMD-NNGQLDYGSSPM 288 (796)
Q Consensus 211 ~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~-~gv~-d~~tyn~LI~~~ 288 (796)
+++|++|.+.|+.||.+|||+||.+|+ +.|++++|.++| .+|... .++. |.++||+||.+
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~----------k~G~~deA~~lf-------~eM~~~~~gi~PD~vTynaLI~a- 588 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACG----------QSGAVDRAFDVL-------AEMKAETHPIDPDHITVGALMKA- 588 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH----------HCCCHHHHHHHH-------HHHHHhcCCCCCcHHHHHHHHHH-
Confidence 999999999999999999999999999 889999999999 478652 3665 88999999999
Q ss_pred cccccccccCChHHHHHHHHHHHHcCCCCCcceec--------cchhhhHHhhhhcC-----CCCcccccccccccccch
Q 003768 289 IDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL--------NSQLLDGRSNLERG-----PDDQSRKKDWSIDNQDAD 355 (796)
Q Consensus 289 ~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~--------~g~~~~A~~l~~~m-----~pd~~ty~~~~~~~~~~~ 355 (796)
|++.|++++|.++|++|.+.|+.|+.++|+ .|++++|..+|++| .||.++|
T Consensus 589 -----y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Ty----------- 652 (1060)
T PLN03218 589 -----CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF----------- 652 (1060)
T ss_pred -----HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-----------
Confidence 999999999999999999999999999998 89999999999999 7999999
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
+++|++|++.|++++|+++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+||+||.+||+.
T Consensus 653 nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~ 732 (1060)
T PLN03218 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhchHHHHhccc--
Q 003768 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKK-- 513 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~I~~~~~~~~~~~a~~~-- 513 (796)
|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|.+|.+.+..++..+|+.+.++|... ..+++..
T Consensus 733 G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~-y~ka~~l~~ 811 (1060)
T PLN03218 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRR-FEKACALGE 811 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999999994444444888877776531 1222110
Q ss_pred ---cchh-------hHHHHHhhhcCCCccccccCCCceeEEEEeeccCCCcccccccccccc-----cCC--HHHHHHHH
Q 003768 514 ---KWNE-------SLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAII-----DLD--PIETEKFA 576 (796)
Q Consensus 514 ---~~~~-------~~v~ea~~~~g~~~~~m~~~g~~p~~v~~t~vl~~G~C~~c~~~L~~i-----~l~--~~e~~~l~ 576 (796)
.|+. .-..+|+. +|++|...|+.|+.++|..++ .+.|..++..+..- .+. ...+..+.
T Consensus 812 ~v~~f~~g~~~~~n~w~~~Al~----lf~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~ 886 (1060)
T PLN03218 812 PVVSFDSGRPQIENKWTSWALM----VYRETISAGTLPTMEVLSQVL-GCLQLPHDATLRNRLIENLGISADSQKQSNLS 886 (1060)
T ss_pred hhhhhhccccccccchHHHHHH----HHHHHHHCCCCCCHHHHHHHH-HHhcccccHHHHHHHHHHhccCCCCcchhhhH
Confidence 0111 11234554 789999999999999996655 55565555432110 000 01111111
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHhhcCCcceeeecceeecccCCCCChh----hHHHHHHHHHhhCCCC-CceE
Q 003768 577 ESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPA----RVNAVVNGIRQKFPSK-KWPL 645 (796)
Q Consensus 577 ~~i~~~a~~~~~~~~~~~F~~~l~~~~pyD~VIDG~nva~~~~~~~~~~----~l~~vv~~~~~~~~~~-~~~l 645 (796)
..|-++ .....++|..|.+|+..+..+++..+-.... +.-..++.. .|...++-|++++..| +.|=
T Consensus 887 ~Li~g~--~~~~~~A~~l~~em~~~Gi~p~~~~~~~~~~-~d~~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~ 957 (1060)
T PLN03218 887 TLVDGF--GEYDPRAFSLLEEAASLGVVPSVSFKKSPIV-IDAEELPVFAAEVYLLTILKGLKHRLAAGAKLPN 957 (1060)
T ss_pred HHHHhh--ccChHHHHHHHHHHHHcCCCCCcccccCceE-EEcccCcchhHHHHHHHHHHHHHHHHhccCcCCc
Confidence 222211 1123579999999999998888876544443 333344443 3333444444433233 4443
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.3e-48 Score=471.70 Aligned_cols=349 Identities=15% Similarity=0.150 Sum_probs=283.3
Q ss_pred cccchhhhhhhhhHhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003768 146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (796)
Q Consensus 146 ~~~~~~~~~l~~~~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd 225 (796)
....++|..+. ..++.++.++|+++|++|.+.| +.||.++||+||++|++.|++++|.++|++|.+.|+.||
T Consensus 435 pd~~Tyn~LL~--a~~k~g~~e~A~~lf~~M~~~G------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd 506 (1060)
T PLN03218 435 PTLSTFNMLMS--VCASSQDIDGALRVLRLVQEAG------LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN 506 (1060)
T ss_pred CCHHHHHHHHH--HHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC
Confidence 55667777777 7788888888888888885554 556668888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC-CcchhhhcccCccccccccccCChHHHH
Q 003768 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLD 304 (796)
Q Consensus 226 ~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~ 304 (796)
.+|||+||.+|+ +.|++++|.++| ++|... |+. |.++||+||.+ ||+.|++++|.
T Consensus 507 vvTynaLI~gy~----------k~G~~eeAl~lf-------~~M~~~-Gv~PD~vTYnsLI~a------~~k~G~~deA~ 562 (1060)
T PLN03218 507 VHTFGALIDGCA----------RAGQVAKAFGAY-------GIMRSK-NVKPDRVVFNALISA------CGQSGAVDRAF 562 (1060)
T ss_pred HHHHHHHHHHHH----------HCcCHHHHHHHH-------HHHHHc-CCCCCHHHHHHHHHH------HHHCCCHHHHH
Confidence 888888888888 888888888888 467665 666 78888888888 88888888888
Q ss_pred HHHHHHHH--cCCCCCcceec--------cchhhhHHhhhhcC-----CCCcccccccccccccchhhHHHHHHhccCHH
Q 003768 305 STFNEKEN--LGQFSNGHMKL--------NSQLLDGRSNLERG-----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQ 369 (796)
Q Consensus 305 ~lf~eM~~--~Gi~Pd~~ty~--------~g~~~~A~~l~~~m-----~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~ 369 (796)
++|++|.. .|+.||.++|+ .|++++|..+|++| .|+.++| |++|.+|++.|+++
T Consensus 563 ~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty-----------nsLI~ay~k~G~~d 631 (1060)
T PLN03218 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY-----------TIAVNSCSQKGDWD 631 (1060)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH-----------HHHHHHHHhcCCHH
Confidence 88888876 67888888888 88888888888888 6777888 88888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHH
Q 003768 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (796)
Q Consensus 370 ~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~ 449 (796)
+|.++|++|.+.|+.||.+||++||++|++.|++++|+++|++|.+.|+.||..+|++||.+||+.|++++|.++|++|.
T Consensus 632 eAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 632 FALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH-HHHHHhchHHHHhccccchhhHHHHHhhhcC
Q 003768 450 EHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARLGKKKWNESLIKDTMENKG 528 (796)
Q Consensus 450 ~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~-I~~~~~~~~~~~a~~~~~~~~~v~ea~~~~g 528 (796)
+.|+.||..+||+||.+|++.|++++|.++|++|...+..|+..||++ |.++++.+...+|. .
T Consensus 712 ~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~-------------~--- 775 (1060)
T PLN03218 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL-------------D--- 775 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH-------------H---
Confidence 888888888888888888888888888888888888843333337777 66666665543333 2
Q ss_pred CCccccccCCCceeEEEEeeccCCCccc
Q 003768 529 GGWHGLGWLGKGKWIVSHTTVGGDALCK 556 (796)
Q Consensus 529 ~~~~~m~~~g~~p~~v~~t~vl~~G~C~ 556 (796)
++..|...|+.|+..+|. .++ +.|.
T Consensus 776 -l~~~M~k~Gi~pd~~tyn-sLI-glc~ 800 (1060)
T PLN03218 776 -LLSQAKEDGIKPNLVMCR-CIT-GLCL 800 (1060)
T ss_pred -HHHHHHHcCCCCCHHHHH-HHH-HHHH
Confidence 566677778888888873 444 5553
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.3e-46 Score=460.19 Aligned_cols=397 Identities=12% Similarity=0.026 Sum_probs=295.5
Q ss_pred ccchhhhhhhhhHhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003768 147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (796)
Q Consensus 147 ~~~~~~~~l~~~~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~ 226 (796)
...+||..+. .+.+.++.++|+++|++|...| +.||.+||+++|.+|++.+++..+.+++..|.+.|+.||.
T Consensus 151 d~~~~n~li~--~~~~~g~~~~A~~~f~~M~~~g------~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (857)
T PLN03077 151 DLFSWNVLVG--GYAKAGYFDEALCLYHRMLWAG------VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV 222 (857)
T ss_pred CeeEHHHHHH--HHHhCCCHHHHHHHHHHHHHcC------CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCccc
Confidence 4455666665 6666666666666666664433 4444466666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHH
Q 003768 227 YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (796)
Q Consensus 227 ~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~l 306 (796)
.+||+||.+|+ ++|++++|..+|+ +|... |.++||+||.+ |++.|++++|.++
T Consensus 223 ~~~n~Li~~y~----------k~g~~~~A~~lf~-------~m~~~----d~~s~n~li~~------~~~~g~~~eAl~l 275 (857)
T PLN03077 223 DVVNALITMYV----------KCGDVVSARLVFD-------RMPRR----DCISWNAMISG------YFENGECLEGLEL 275 (857)
T ss_pred chHhHHHHHHh----------cCCCHHHHHHHHh-------cCCCC----CcchhHHHHHH------HHhCCCHHHHHHH
Confidence 66666666666 8999999999995 56543 88999999999 9999999999999
Q ss_pred HHHHHHcCCCCCcceec-------------------------------------------cchhhhHHhhhhcC-CCCcc
Q 003768 307 FNEKENLGQFSNGHMKL-------------------------------------------NSQLLDGRSNLERG-PDDQS 342 (796)
Q Consensus 307 f~eM~~~Gi~Pd~~ty~-------------------------------------------~g~~~~A~~l~~~m-~pd~~ 342 (796)
|++|.+.|+.||.+||+ .|++++|..+|++| .||++
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~ 355 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Confidence 99999999988888887 57777788888888 77888
Q ss_pred cccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc
Q 003768 343 RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (796)
Q Consensus 343 ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~ 422 (796)
+| |+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++++.|.+.|+.|+.
T Consensus 356 s~-----------n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~ 424 (857)
T PLN03077 356 SW-----------TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424 (857)
T ss_pred eH-----------HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcch
Confidence 88 8888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH-HHHH
Q 003768 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKW 501 (796)
Q Consensus 423 ~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~-I~~~ 501 (796)
.+||+||.+|+++|++++|.++|++|.+ +|.++||+||.+|++.|+.++|..+|++|... ..|+..|+.. |.++
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~pd~~t~~~lL~a~ 499 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSAC 499 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCCHhHHHHHHHHH
Confidence 8888888888888888888888888765 67778888888888888888888888888753 2333337766 4444
Q ss_pred HhchHHHHhccccchhhHHHHHhhhcCCCccccccCCCceeEEEEeeccCCCcccccccccccccC--CHHHHHHHHHHH
Q 003768 502 FNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDL--DPIETEKFAESV 579 (796)
Q Consensus 502 ~~~~~~~~a~~~~~~~~~v~ea~~~~g~~~~~m~~~g~~p~~v~~t~vl~~G~C~~c~~~L~~i~l--~~~e~~~l~~~i 579 (796)
++.+....+. + ++..+...|..++...+ +.+++++|+++...-+.-.+ .+.+...|...|
T Consensus 500 ~~~g~l~~~~-------------~----i~~~~~~~g~~~~~~~~-naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI 561 (857)
T PLN03077 500 ARIGALMCGK-------------E----IHAHVLRTGIGFDGFLP-NALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILL 561 (857)
T ss_pred hhhchHHHhH-------------H----HHHHHHHhCCCccceec-hHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHH
Confidence 4444332221 1 33345556778888888 78899999988754332222 134567788899
Q ss_pred HHHHHhhhchHHHHHHHHHHhhcCCcceeeecc
Q 003768 580 ASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAA 612 (796)
Q Consensus 580 ~~~a~~~~~~~~~~~F~~~l~~~~pyD~VIDG~ 612 (796)
..++.+|...++++.|.+|.+.+..||.+.-..
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 999999999999999999999887777665433
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-44 Score=434.67 Aligned_cols=416 Identities=12% Similarity=0.087 Sum_probs=344.1
Q ss_pred ccchhhhhhhhhHhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003768 147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (796)
Q Consensus 147 ~~~~~~~~l~~~~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~ 226 (796)
...+++..+. .+.+.++..+|+++|+.|...+ +..||..+|+++|.+|++.++++.|.+++..|++.|+.||.
T Consensus 86 ~~~~~~~~i~--~l~~~g~~~~Al~~f~~m~~~~-----~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~ 158 (697)
T PLN03081 86 SGVSLCSQIE--KLVACGRHREALELFEILEAGC-----PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ 158 (697)
T ss_pred CceeHHHHHH--HHHcCCCHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcch
Confidence 3445677776 7888999999999999995433 35688899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHH
Q 003768 227 YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (796)
Q Consensus 227 ~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~l 306 (796)
.+||.||++|+ ++|++++|.++|+ +|... |+++||+||.+ |++.|++++|.++
T Consensus 159 ~~~n~Li~~y~----------k~g~~~~A~~lf~-------~m~~~----~~~t~n~li~~------~~~~g~~~~A~~l 211 (697)
T PLN03081 159 YMMNRVLLMHV----------KCGMLIDARRLFD-------EMPER----NLASWGTIIGG------LVDAGNYREAFAL 211 (697)
T ss_pred HHHHHHHHHHh----------cCCCHHHHHHHHh-------cCCCC----CeeeHHHHHHH------HHHCcCHHHHHHH
Confidence 99999999999 9999999999995 66543 99999999999 9999999999999
Q ss_pred HHHHHHcCCCCCcceec-------------------------------------------cchhhhHHhhhhcC-CCCcc
Q 003768 307 FNEKENLGQFSNGHMKL-------------------------------------------NSQLLDGRSNLERG-PDDQS 342 (796)
Q Consensus 307 f~eM~~~Gi~Pd~~ty~-------------------------------------------~g~~~~A~~l~~~m-~pd~~ 342 (796)
|++|.+.|+.||..||+ +|++++|..+|++| .+|++
T Consensus 212 f~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~v 291 (697)
T PLN03081 212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV 291 (697)
T ss_pred HHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChh
Confidence 99999988888766653 78999999999999 89999
Q ss_pred cccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc
Q 003768 343 RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (796)
Q Consensus 343 ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~ 422 (796)
+| |+||.+|++.|++++|+++|++|.+.|+.||.+||+++|.+|++.|++++|.+++.+|.+.|+.||.
T Consensus 292 t~-----------n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 292 AW-----------NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred HH-----------HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 99 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH-HHHH
Q 003768 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKW 501 (796)
Q Consensus 423 ~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~-I~~~ 501 (796)
.+|++||.+||++|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.+..|+..||.. |.++
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999975 8999999999999999999999999999999944444448888 6666
Q ss_pred HhchHHHHhccccchhhHHHHHhhhcCCCcccccc-CCCceeEEEEeeccCCCccccccccccc--c---cCCHHHHHHH
Q 003768 502 FNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGW-LGKGKWIVSHTTVGGDALCKCCGEKLAI--I---DLDPIETEKF 575 (796)
Q Consensus 502 ~~~~~~~~a~~~~~~~~~v~ea~~~~g~~~~~m~~-~g~~p~~v~~t~vl~~G~C~~c~~~L~~--i---~l~~~e~~~l 575 (796)
++.|...++ .. +|..|.. .|+.|+..+| +.+++++|+.|...-+. + .+.+ +...|
T Consensus 437 ~~~g~~~~a-------------~~----~f~~m~~~~g~~p~~~~y-~~li~~l~r~G~~~eA~~~~~~~~~~p-~~~~~ 497 (697)
T PLN03081 437 RYSGLSEQG-------------WE----IFQSMSENHRIKPRAMHY-ACMIELLGREGLLDEAYAMIRRAPFKP-TVNMW 497 (697)
T ss_pred hcCCcHHHH-------------HH----HHHHHHHhcCCCCCccch-HhHHHHHHhcCCHHHHHHHHHHCCCCC-CHHHH
Confidence 666654433 33 6666754 5889999999 78889999998754321 1 1111 22345
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHhhcC----CcceeeecceeecccCCCCChhhHHHHHHHHHh
Q 003768 576 AESVASIAIKRERNSSFQKFQKWLDYYG----PFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQ 636 (796)
Q Consensus 576 ~~~i~~~a~~~~~~~~~~~F~~~l~~~~----pyD~VIDG~nva~~~~~~~~~~~l~~vv~~~~~ 636 (796)
...+.....+|....+...+++.++-.+ .|..++++ |.+.| .++....+.+.+++
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~-----y~~~G-~~~~A~~v~~~m~~ 556 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNL-----YNSSG-RQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHH-----HHhCC-CHHHHHHHHHHHHH
Confidence 5566666677777766666666654321 23333332 32222 34555555555555
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.4e-44 Score=437.52 Aligned_cols=309 Identities=13% Similarity=0.033 Sum_probs=241.6
Q ss_pred cccchhhhhhhhhHhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003768 146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (796)
Q Consensus 146 ~~~~~~~~~l~~~~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd 225 (796)
....+||..+. .+.+.++.++|+++|++|...| +.||.+||+++|.+|++.|+++.|.+++..|.+.|+.||
T Consensus 251 ~d~~s~n~li~--~~~~~g~~~eAl~lf~~M~~~g------~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d 322 (857)
T PLN03077 251 RDCISWNAMIS--GYFENGECLEGLELFFTMRELS------VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322 (857)
T ss_pred CCcchhHHHHH--HHHhCCCHHHHHHHHHHHHHcC------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc
Confidence 45566788777 7888888888888888886655 455558888888888888888888888888888888889
Q ss_pred HHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHH
Q 003768 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDS 305 (796)
Q Consensus 226 ~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~ 305 (796)
..+||+||.+|+ ++|++++|.++|+ +|... |.++||+||.+ |++.|++++|.+
T Consensus 323 ~~~~n~Li~~y~----------k~g~~~~A~~vf~-------~m~~~----d~~s~n~li~~------~~~~g~~~~A~~ 375 (857)
T PLN03077 323 VSVCNSLIQMYL----------SLGSWGEAEKVFS-------RMETK----DAVSWTAMISG------YEKNGLPDKALE 375 (857)
T ss_pred hHHHHHHHHHHH----------hcCCHHHHHHHHh-------hCCCC----CeeeHHHHHHH------HHhCCCHHHHHH
Confidence 999999999988 9999999999994 66543 88999999999 999999999999
Q ss_pred HHHHHHHcCCCCCcceec-------------------------------------------cchhhhHHhhhhcC-CCCc
Q 003768 306 TFNEKENLGQFSNGHMKL-------------------------------------------NSQLLDGRSNLERG-PDDQ 341 (796)
Q Consensus 306 lf~eM~~~Gi~Pd~~ty~-------------------------------------------~g~~~~A~~l~~~m-~pd~ 341 (796)
+|++|.+.|+.||.+||+ .|++++|..+|++| .+|+
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~ 455 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV 455 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCe
Confidence 999999999999999886 68889999999999 8899
Q ss_pred ccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003768 342 SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR 421 (796)
Q Consensus 342 ~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd 421 (796)
++| |+||.+|++.|+.++|+++|++|.. ++.||.+||+++|.+|++.|+++.+.+++..|.+.|+.||
T Consensus 456 vs~-----------~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~ 523 (857)
T PLN03077 456 ISW-----------TSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523 (857)
T ss_pred eeH-----------HHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence 999 9999999999999999999999985 6899999999988888888888888888888877777666
Q ss_pred cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh--HHHH-H
Q 003768 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADV-I 498 (796)
Q Consensus 422 ~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~--t~~~-I 498 (796)
..+||+||.+|+++|++++|+++|++| .||..+||+||.+|++.|+.++|.++|++|.+. ++.|+ ||.. |
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~--g~~Pd~~T~~~ll 596 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES--GVNPDEVTFISLL 596 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCcccHHHHH
Confidence 666555555555555555555555554 355555555555555555555555555555555 33333 4544 4
Q ss_pred HHHHhchHHH
Q 003768 499 AKWFNSKEAA 508 (796)
Q Consensus 499 ~~~~~~~~~~ 508 (796)
.++++.|...
T Consensus 597 ~a~~~~g~v~ 606 (857)
T PLN03077 597 CACSRSGMVT 606 (857)
T ss_pred HHHhhcChHH
Confidence 4444444443
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=426.86 Aligned_cols=383 Identities=11% Similarity=-0.005 Sum_probs=256.2
Q ss_pred cccccchhhhhhhhhHhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003768 144 GIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIK 223 (796)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~ 223 (796)
......++|..+. ...+.++.++|.++|++| ..||+++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 154 ~~~~~~~~n~Li~--~y~k~g~~~~A~~lf~~m----------~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 221 (697)
T PLN03081 154 FEPDQYMMNRVLL--MHVKCGMLIDARRLFDEM----------PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD 221 (697)
T ss_pred CCcchHHHHHHHH--HHhcCCCHHHHHHHHhcC----------CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 3445667888887 888999999999999999 3478899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC-CcchhhhcccCccccccccccCChHH
Q 003768 224 LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDD 302 (796)
Q Consensus 224 pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~ 302 (796)
||..||+++|.+|+ +.|..+.+.+++. .+.+. |+. |..+||+||++ |++.|++++
T Consensus 222 p~~~t~~~ll~a~~----------~~~~~~~~~~l~~-------~~~~~-g~~~d~~~~n~Li~~------y~k~g~~~~ 277 (697)
T PLN03081 222 AEPRTFVVMLRASA----------GLGSARAGQQLHC-------CVLKT-GVVGDTFVSCALIDM------YSKCGDIED 277 (697)
T ss_pred CChhhHHHHHHHHh----------cCCcHHHHHHHHH-------HHHHh-CCCccceeHHHHHHH------HHHCCCHHH
Confidence 99999999999998 5555555655552 33333 444 55566666666 666666666
Q ss_pred HHHHHHHHHHcCCCCCcceec--------cchhhhHHhhhhcC-----CCCcccccccccccccchhhHHHHHHhccCHH
Q 003768 303 LDSTFNEKENLGQFSNGHMKL--------NSQLLDGRSNLERG-----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQ 369 (796)
Q Consensus 303 A~~lf~eM~~~Gi~Pd~~ty~--------~g~~~~A~~l~~~m-----~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~ 369 (796)
|.++|++|.. +|+++|+ .|+.++|..+|++| .||.+|| +++|.+|++.|.++
T Consensus 278 A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~-----------~~ll~a~~~~g~~~ 342 (697)
T PLN03081 278 ARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF-----------SIMIRIFSRLALLE 342 (697)
T ss_pred HHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH-----------HHHHHHHHhccchH
Confidence 6666666642 4556665 56666666666665 5566666 77777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHH
Q 003768 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (796)
Q Consensus 370 ~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~ 449 (796)
+|.+++.+|.+.|+.||..+||+||++|++.|++++|.++|++|. .||+.|||+||.+|++.|+.++|.++|++|.
T Consensus 343 ~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred HHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777664 3566777777777777777777777777777
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCChhHHHH-HHHHHhchHHHHhccccchhhHHHHHhhhc
Q 003768 450 EHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT-SVRKVSPSTADV-IAKWFNSKEAARLGKKKWNESLIKDTMENK 527 (796)
Q Consensus 450 ~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~-~~~~~~p~t~~~-I~~~~~~~~~~~a~~~~~~~~~v~ea~~~~ 527 (796)
+.|+.||..||++||.+|++.|.+++|.++|+.|.+ .+..|...+|+. |..+++.|...+|. .
T Consensus 419 ~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~-------------~-- 483 (697)
T PLN03081 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY-------------A-- 483 (697)
T ss_pred HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH-------------H--
Confidence 777777777777777777777777777777777754 322222235665 66666655544333 1
Q ss_pred CCCccccccCCCceeEEEEeeccCCCcccccccccc------cccCCHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHhh
Q 003768 528 GGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLA------IIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDY 601 (796)
Q Consensus 528 g~~~~~m~~~g~~p~~v~~t~vl~~G~C~~c~~~L~------~i~l~~~e~~~l~~~i~~~a~~~~~~~~~~~F~~~l~~ 601 (796)
++..| +..|+.++| +.+..+.|..+...++ .+.+.+.....+...+..++..|...++.+.|++|.++
T Consensus 484 --~~~~~---~~~p~~~~~-~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 484 --MIRRA---PFKPTVNMW-AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred --HHHHC---CCCCCHHHH-HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 12222 345555555 4555555555543322 11223322223334444566667778888999999888
Q ss_pred c
Q 003768 602 Y 602 (796)
Q Consensus 602 ~ 602 (796)
+
T Consensus 558 g 558 (697)
T PLN03081 558 G 558 (697)
T ss_pred C
Confidence 7
No 7
>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []. It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.
Probab=99.82 E-value=5.6e-21 Score=185.78 Aligned_cols=127 Identities=29% Similarity=0.435 Sum_probs=94.6
Q ss_pred ceeeecceeeccc--CCCCChhhHHHHHHHHHhhCCCCCceEEEeccccccCCCCCChhhHHHHHHHHHcCceEecCCCC
Q 003768 606 EAVVDAANVGLYS--QRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGS 683 (796)
Q Consensus 606 D~VIDG~nva~~~--~~~~~~~~l~~vv~~~~~~~~~~~~~livl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~s 683 (796)
-+||||+|||+.. +..|++.+|..+|++|++ .|+.+++|++..+........+.+.+.+++|.+.+.+++||+++
T Consensus 4 ~VVIDG~NVA~~~~~~~~f~~~~i~~~v~~~~~---rG~~~v~v~~~~~~~~~~~~~~~~~~~L~~l~~~~~i~~tp~~~ 80 (155)
T PF11977_consen 4 PVVIDGSNVAYSHGNQKFFSVRGIQIAVEYFKS---RGHEVVVVFPPNYRYKKLAKKSDDQEELEKLIRKGIIYFTPSGS 80 (155)
T ss_dssp -EEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHH---TT---EEEEEEGGGGS-TTS-EESTCHHHHHHHTTSEEEE-EEE
T ss_pred EEEEeCHHHHhhcCCCCCcCHHHHHHHHHHHHH---cCCCeEEEEcchhhhccccCCCChHHHHHHHHHCCeEEEcCCCC
Confidence 3799999998532 335899999999999999 68878888876553322234677889999999999999999999
Q ss_pred C--------ccHHHHHHHHhcCcEEEeCCccccccccccCCchhhhHhhhcEEEEEeecCCCe
Q 003768 684 N--------DDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPE 738 (796)
Q Consensus 684 ~--------DD~~~lyaa~~~~~~~vsnD~mRdH~~~ll~~~~F~rW~~~hqv~~~~~~~~~~ 738 (796)
+ ||+|||++|...+|+|||||+||||.+ ....|.+|.++|+|+|+|......
T Consensus 81 ~~g~~~~~ydD~~il~~A~~~~a~IVSND~frD~~~---~~~~~~~~~~~~~i~~tf~~~~~~ 140 (155)
T PF11977_consen 81 NYGSRSRNYDDRYILYYAEEKDAVIVSNDRFRDHIF---ENPELRRWIERRLIRFTFVGDEFM 140 (155)
T ss_dssp ETTEEEEB-HHHHHHHHHHHTT-EEE-S---HHHHH---H-HHHHHHHHHHEE--EEETTEEE
T ss_pred CCCCcccccchHHHHHHHHHcCCEEEeCchHHHHhh---cchHHHHHHHHeeeeEEEECCEEE
Confidence 7 999999999999999999999999999 556799999999999999644433
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.66 E-value=1.4e-14 Score=162.42 Aligned_cols=285 Identities=14% Similarity=0.057 Sum_probs=193.7
Q ss_pred hcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHc
Q 003768 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG---QYHYNVLLYLCSS 238 (796)
Q Consensus 162 k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd---~~tyn~LL~a~~~ 238 (796)
..++.++|...|+++.... ..+..+|..+...+.+.|++++|..+++.+...+-.++ ...+..|...+.
T Consensus 47 ~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~- 118 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL- 118 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-
Confidence 4577889999999996532 12346889999999999999999999999997643332 356778888888
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd 318 (796)
+.|++++|..+|. ++... .-.+..+++.++.. +++.|++++|.++++.|...+-.++
T Consensus 119 ---------~~g~~~~A~~~~~-------~~l~~-~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 119 ---------KAGLLDRAEELFL-------QLVDE-GDFAEGALQQLLEI------YQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred ---------HCCCHHHHHHHHH-------HHHcC-CcchHHHHHHHHHH------HHHhchHHHHHHHHHHHHHhcCCcc
Confidence 8899999999994 55543 22266779999999 9999999999999999988763332
Q ss_pred cc----eec--------cchhhhHHhhhhcC---CCC-cccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCC
Q 003768 319 GH----MKL--------NSQLLDGRSNLERG---PDD-QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE 382 (796)
Q Consensus 319 ~~----ty~--------~g~~~~A~~l~~~m---~pd-~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~g 382 (796)
.. .|. .++..+|...|+++ .|+ ...+ ..+...|.+.|++++|.++|+++...+
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRAS-----------ILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 21 111 46666666666665 232 2233 455566666777777777777666543
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003768 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462 (796)
Q Consensus 383 i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~ 462 (796)
......+++.++.+|++.|+.++|...++++.+. .|+...+..+...+.+.|+.++|..+++++.+. .|+..+++.
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~ 320 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHR 320 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHH
Confidence 2222345666666777777777777777666654 355555566666667777777777777666654 366666666
Q ss_pred HHHHHHh---cCChhHHHHHHHHHHhCCCCCCh
Q 003768 463 LLRVSVE---AGKGDRVYYLLHKLRTSVRKVSP 492 (796)
Q Consensus 463 LI~~~~~---~G~~~~A~~ll~~M~~~~~~~~p 492 (796)
++..++. .|+.+++..+|++|.+....+.|
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 6666654 34666677777766665444444
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.51 E-value=9.9e-12 Score=139.27 Aligned_cols=250 Identities=13% Similarity=-0.003 Sum_probs=192.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC---
Q 003768 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--- 276 (796)
Q Consensus 200 a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~--- 276 (796)
.+...|++++|+..|.+|.+.+ +.+..++..+...+. ..|++++|..++. .+.......
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~----------~~g~~~~A~~~~~-------~~l~~~~~~~~~ 105 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFR----------RRGEVDRAIRIHQ-------NLLSRPDLTREQ 105 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHH----------HcCcHHHHHHHHH-------HHhcCCCCCHHH
Confidence 4567899999999999999763 235568888888888 8899999999994 555432222
Q ss_pred CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchh
Q 003768 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (796)
Q Consensus 277 d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n 356 (796)
+...|..+... |.+.|++++|..+|+++.+.. .++..++ +
T Consensus 106 ~~~~~~~La~~------~~~~g~~~~A~~~~~~~l~~~-~~~~~~~---------------------------------~ 145 (389)
T PRK11788 106 RLLALQELGQD------YLKAGLLDRAEELFLQLVDEG-DFAEGAL---------------------------------Q 145 (389)
T ss_pred HHHHHHHHHHH------HHHCCCHHHHHHHHHHHHcCC-cchHHHH---------------------------------H
Confidence 12457888888 999999999999999998752 1233334 8
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~ 432 (796)
.++..+.+.|++++|.++|+.|...+..++ ...|..+...+.+.|+.++|..+|+++.+.. ..+...+..+...+
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 224 (389)
T PRK11788 146 QLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLA 224 (389)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHH
Confidence 899999999999999999999988654332 2246678888899999999999999998753 22355777788999
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH-HHHHHhchHHHHh
Q 003768 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARL 510 (796)
Q Consensus 433 ~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~-I~~~~~~~~~~~a 510 (796)
++.|+.++|.++++++.+.+-.....+++.|..+|++.|+.++|..+++++... .|.+..+.. ...+.+.+...+|
T Consensus 225 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A 301 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAA 301 (389)
T ss_pred HHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHH
Confidence 999999999999999987642222467889999999999999999999999887 555544433 5555555554433
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.44 E-value=3.1e-11 Score=148.29 Aligned_cols=303 Identities=12% Similarity=0.034 Sum_probs=213.3
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~ 239 (796)
....++..+|.+.|+.+...... ....+..++..+.+.|++++|+++++.+... .+.+..+|+.+..++.
T Consensus 407 ~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~-- 476 (899)
T TIGR02917 407 KLSQGDPSEAIADLETAAQLDPE-------LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYL-- 476 (899)
T ss_pred HHhCCChHHHHHHHHHHHhhCCc-------chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHH--
Confidence 34567778888888887543211 1145566777888888888888888888753 3456777888888887
Q ss_pred ccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCc
Q 003768 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (796)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~ 319 (796)
..|+.++|...|. ++... .-.+...+..+... +...|++++|...|+++..... .+.
T Consensus 477 --------~~~~~~~A~~~~~-------~a~~~-~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~~-~~~ 533 (899)
T TIGR02917 477 --------GKGDLAKAREAFE-------KALSI-EPDFFPAAANLARI------DIQEGNPDDAIQRFEKVLTIDP-KNL 533 (899)
T ss_pred --------hCCCHHHHHHHHH-------HHHhh-CCCcHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCc-CcH
Confidence 7788888888884 33322 11144456666666 7888888888888888876541 122
Q ss_pred ceec--------cchhhhHHhhhhcC----CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCH
Q 003768 320 HMKL--------NSQLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE 387 (796)
Q Consensus 320 ~ty~--------~g~~~~A~~l~~~m----~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~ 387 (796)
.++. .|+..+|...+.++ ..+...+ ..+...|.+.|++++|.++++.+.... +.+.
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 601 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPA-----------LALAQYYLGKGQLKKALAILNEAADAA-PDSP 601 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCH
Confidence 2222 67778888887776 2333344 677888888889999999988887643 5567
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003768 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (796)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~ 467 (796)
.+|..+..+|...|++++|...|+.+.+.. ..+...+..+...+.+.|+.++|..+++.+.+.. ..+..++..+...+
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 788888888888999999999888887653 2355667778888888899999999888887643 23477888888888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCh-hHHHH-HHHHHhchHHHHhc
Q 003768 468 VEAGKGDRVYYLLHKLRTSVRKVSP-STADV-IAKWFNSKEAARLG 511 (796)
Q Consensus 468 ~~~G~~~~A~~ll~~M~~~~~~~~p-~t~~~-I~~~~~~~~~~~a~ 511 (796)
...|++++|..+++.|... .+.. ..+.. ...++..+...+|.
T Consensus 680 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHH
Confidence 8889999999988888876 3332 23333 44455555544443
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.44 E-value=4.9e-11 Score=146.51 Aligned_cols=277 Identities=11% Similarity=-0.011 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhc
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~ 271 (796)
..|..+...|.+.|++++|+..|+.+.+.. +.+...+..+..++. +.|+.++|...+. .+..
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~~~~ 663 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA----------VMKNYAKAITSLK-------RALE 663 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHh
Confidence 455555555666666666666666555432 223444555555555 5566666666663 2222
Q ss_pred cCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceec--------cchhhhHHhhhhcC---CCC
Q 003768 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL--------NSQLLDGRSNLERG---PDD 340 (796)
Q Consensus 272 ~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~--------~g~~~~A~~l~~~m---~pd 340 (796)
. .-.+..+|..+... ++..|++++|..+++.|.+.+.. +...+. .|+..+|...+..+ .|+
T Consensus 664 ~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 735 (899)
T TIGR02917 664 L-KPDNTEAQIGLAQL------LLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS 735 (899)
T ss_pred c-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 1 11144556666666 66777777777777777665421 222222 66777777777765 444
Q ss_pred cccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 003768 341 QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (796)
Q Consensus 341 ~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P 420 (796)
..++ ..+...+.+.|+.++|.+.++.+.... +.+..+++.+...|...|+.++|..+|+++.+.. .+
T Consensus 736 ~~~~-----------~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~ 802 (899)
T TIGR02917 736 SQNA-----------IKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PD 802 (899)
T ss_pred chHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CC
Confidence 4444 556777777777777777777776653 4566777777777777788888888887777653 34
Q ss_pred CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhHH-HHH
Q 003768 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTA-DVI 498 (796)
Q Consensus 421 d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~-~p~t~-~~I 498 (796)
+...++.+...+.+.|+ .+|.++++.+.+.. .-+...+..+...+...|++++|..+|+++.+. .+ .+.++ ...
T Consensus 803 ~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l~ 878 (899)
T TIGR02917 803 NAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--APEAAAIRYHLA 878 (899)
T ss_pred CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChHHHHHHH
Confidence 56677777777777777 77777777776642 123445566777778888888888888888876 33 33443 336
Q ss_pred HHHHhchHHHHhc
Q 003768 499 AKWFNSKEAARLG 511 (796)
Q Consensus 499 ~~~~~~~~~~~a~ 511 (796)
..+++.|...+|.
T Consensus 879 ~~~~~~g~~~~A~ 891 (899)
T TIGR02917 879 LALLATGRKAEAR 891 (899)
T ss_pred HHHHHcCCHHHHH
Confidence 6666666654443
No 12
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=2.9e-12 Score=99.81 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003768 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (796)
Q Consensus 189 Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~ 237 (796)
||+++||++|++|++.|++++|+++|++|.+.|++||.+||++||++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 8889999999999999999999999999999999999999999999998
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=6.4e-10 Score=118.76 Aligned_cols=220 Identities=16% Similarity=0.167 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhc
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~ 271 (796)
++=|.|+.. ...|.+..+.-+|+.|...|+..+...--.|+...|-.+ ....- |
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~N--------s~~~~-----~------------ 170 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYN--------SSNVP-----F------------ 170 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc--------CCCCc-----c------------
Confidence 344555544 457889999999999999999998888888888777211 11100 0
Q ss_pred cCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCccccccccccc
Q 003768 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (796)
Q Consensus 272 ~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~ 351 (796)
.-.+-|-.|...|- -...+|..|.+.+ -+|+.......||
T Consensus 171 ------------------------------~E~~~Fv~~~~~~E-~S~~sWK~G~vAd--L~~E~~PKT~et~------- 210 (625)
T KOG4422|consen 171 ------------------------------AEWEEFVGMRNFGE-DSTSSWKSGAVAD--LLFETLPKTDETV------- 210 (625)
T ss_pred ------------------------------hhHHHHhhcccccc-ccccccccccHHH--HHHhhcCCCchhH-------
Confidence 00122233333331 1233444444444 3344445556667
Q ss_pred ccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 003768 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (796)
Q Consensus 352 ~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~ 431 (796)
.+||.|+||--..++|.+++++-.....+.+..+||.||.+-.-.- ..+++.+|....+.||+.|||+++.+
T Consensus 211 ----s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 211 ----SIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred ----HHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHH
Confidence 9999999999999999999999999988999999999998765332 38899999999999999999999999
Q ss_pred HHHcCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHh
Q 003768 432 FCNNGDVDK----ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR-VYYLLHKLRT 485 (796)
Q Consensus 432 ~~~~G~~~~----A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~-A~~ll~~M~~ 485 (796)
.++.|+++. |.+++.+|++-||.|...+|.-+|.-+++.++..+ |..++.++..
T Consensus 283 ~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 999998766 46788999999999999999999999999988754 5555555443
No 14
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=4.6e-12 Score=98.71 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 003768 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (796)
Q Consensus 385 pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~ 433 (796)
||+++||+||++|++.|++++|+++|++|++.|+.||..||++||++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=1.3e-08 Score=109.00 Aligned_cols=235 Identities=14% Similarity=0.099 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhc
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~ 271 (796)
.+|.+||.++||-...+.|.++|.+-.....+.+..+||.||.+-+-. ...++. .||..
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~--------------~~K~Lv-------~EMis 266 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS--------------VGKKLV-------AEMIS 266 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh--------------ccHHHH-------HHHHH
Confidence 799999999999999999999999999998999999999999887621 124455 47776
Q ss_pred cCCCC-CcchhhhcccCccccccccccCChHHH----HHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccc
Q 003768 272 SRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDL----DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKD 346 (796)
Q Consensus 272 ~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A----~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~ 346 (796)
. .+. |..|+|+++++ ..+.|+++.| .+++.||++.|+.|...+|
T Consensus 267 q-km~Pnl~TfNalL~c------~akfg~F~~ar~aalqil~EmKeiGVePsLsSy------------------------ 315 (625)
T KOG4422|consen 267 Q-KMTPNLFTFNALLSC------AAKFGKFEDARKAALQILGEMKEIGVEPSLSSY------------------------ 315 (625)
T ss_pred h-hcCCchHhHHHHHHH------HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhH------------------------
Confidence 6 555 99999999999 9999988665 6788999999999999999
Q ss_pred cccccccchhhHHHHHHhccCHHH-HHHHHHHHHh----CCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-
Q 003768 347 WSIDNQDADEIRLSEDAKKYAFQR-GFEIYEKMCL----DEVPM----NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL- 416 (796)
Q Consensus 347 ~~~~~~~~~n~lI~~~~k~g~~~~-A~~lf~~M~~----~gi~p----d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~- 416 (796)
-.+|.-+++.++..+ |..+..++.. +-.+| |..-|.+-+..|.+..+.+.|.++..-++..
T Consensus 316 ---------h~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~ 386 (625)
T KOG4422|consen 316 ---------HLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD 386 (625)
T ss_pred ---------HHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence 778888888887533 4444444432 33333 5567788899999999999999998776533
Q ss_pred ---CCCCC---cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003768 417 ---GINPR---LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487 (796)
Q Consensus 417 ---gi~Pd---~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~ 487 (796)
-+.|+ .+-|.-+....|....++.-+..|+.|+-.-+-|+..+-.-++++..-+|.++-.-+++..|..-+
T Consensus 387 N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 387 NWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred chhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 13333 234666888999999999999999999988788999999999999999999999999999888873
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.95 E-value=6.5e-07 Score=107.35 Aligned_cols=280 Identities=10% Similarity=-0.038 Sum_probs=202.8
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.....++..+|+.+++......... | ..+..+..++...|++++|++.|+++.... +-+...+..+-.++.
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~p~~-----~--~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~- 121 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTAKNG-----R--DLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL- 121 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhCCCc-----h--hHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH-
Confidence 4456788999999998885543221 2 234444466667999999999999998642 223445655656666
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd 318 (796)
..|+.++|...+. +.... .-.+...|..+... +...|++++|...++.+....-.+.
T Consensus 122 ---------~~g~~~~Ai~~l~-------~Al~l-~P~~~~a~~~la~~------l~~~g~~~eA~~~~~~~~~~~P~~~ 178 (656)
T PRK15174 122 ---------KSKQYATVADLAE-------QAWLA-FSGNSQIFALHLRT------LVLMDKELQAISLARTQAQEVPPRG 178 (656)
T ss_pred ---------HcCCHHHHHHHHH-------HHHHh-CCCcHHHHHHHHHH------HHHCCChHHHHHHHHHHHHhCCCCH
Confidence 7789999999884 33321 11145567778888 8999999999999988765532222
Q ss_pred cceec------cchhhhHHhhhhcC-C----CCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCH
Q 003768 319 GHMKL------NSQLLDGRSNLERG-P----DDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE 387 (796)
Q Consensus 319 ~~ty~------~g~~~~A~~l~~~m-~----pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~ 387 (796)
...+. .|+..+|...++.+ . ++...+ ..+...+.+.|+.++|.+.|++..... +-+.
T Consensus 179 ~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~-----------~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~ 246 (656)
T PRK15174 179 DMIATCLSFLNKSRLPEDHDLARALLPFFALERQESA-----------GLAVDTLCAVGKYQEAIQTGESALARG-LDGA 246 (656)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHH-----------HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH
Confidence 11111 78888888888775 1 111122 445677888999999999999988764 4467
Q ss_pred HHHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHH
Q 003768 388 ASLTAVGRMAMSMGDGDM----AFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELE 461 (796)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~----A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd-~~ty~ 461 (796)
..+..+-..+...|+.++ |...|++..+. .| +...+..+-..+.+.|+.++|...+++..+.. |+ ...+.
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~ 322 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRA 322 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 788889999999999986 78889887765 34 45678888888999999999999999988754 54 45566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 462 ALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 462 ~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+-..+.+.|++++|...|+.+...
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7788889999999999999998876
No 17
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.95 E-value=4.6e-09 Score=120.90 Aligned_cols=244 Identities=12% Similarity=0.057 Sum_probs=169.4
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCC
Q 003768 171 KVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250 (796)
Q Consensus 171 ~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G 250 (796)
.++-.|+..|+.|++ +||..+|.-||..|+.+.|- +|..|+-..+..+...|+.++.+... .+
T Consensus 11 nfla~~e~~gi~PnR------vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~----------An 73 (1088)
T KOG4318|consen 11 NFLALHEISGILPNR------VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKE----------AN 73 (1088)
T ss_pred hHHHHHHHhcCCCch------hhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccc----------cc
Confidence 455677777777777 99999999999999999999 99999988888889999999999883 33
Q ss_pred ChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHH-------cC---------
Q 003768 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN-------LG--------- 314 (796)
Q Consensus 251 ~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~-------~G--------- 314 (796)
+.+.+. .+-.-||+.|+.+ |...|++..-..+=+.|.. .|
T Consensus 74 d~Enpk------------------ep~aDtyt~Ll~a------yr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl 129 (1088)
T KOG4318|consen 74 DAENPK------------------EPLADTYTNLLKA------YRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFL 129 (1088)
T ss_pred cccCCC------------------CCchhHHHHHHHH------HHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHH
Confidence 333322 2234579999999 9999987543222222221 11
Q ss_pred --------CCCCcceec-----cchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhcc--CHHHHHHHHHHHH
Q 003768 315 --------QFSNGHMKL-----NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY--AFQRGFEIYEKMC 379 (796)
Q Consensus 315 --------i~Pd~~ty~-----~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g--~~~~A~~lf~~M~ 379 (796)
.-||..+-. .|.+..+++++..+ |...-+ +...- +.+.. ...-..++....+
T Consensus 130 ~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~-Pvsa~~-----------~p~~v-fLrqnv~~ntpvekLl~~ck 196 (1088)
T KOG4318|consen 130 MKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV-PVSAWN-----------APFQV-FLRQNVVDNTPVEKLLNMCK 196 (1088)
T ss_pred hhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC-Cccccc-----------chHHH-HHHHhccCCchHHHHHHHHH
Confidence 122222222 44455555555444 111111 11111 11111 1223334443333
Q ss_pred hCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 003768 380 LDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (796)
Q Consensus 380 ~~gi-~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ 458 (796)
. +. .|+..+|.+++++...+|+++.|..++.+|++.|+..+..-|-+||-+ .++..-+..+...|.+.||.|+..
T Consensus 197 s-l~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~se 272 (1088)
T KOG4318|consen 197 S-LVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSE 272 (1088)
T ss_pred H-hhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcc
Confidence 2 22 599999999999999999999999999999999999999989999887 888888999999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 003768 459 ELEALLRVSVEAGK 472 (796)
Q Consensus 459 ty~~LI~~~~~~G~ 472 (796)
|+.--+-.+..+|.
T Consensus 273 T~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 273 TQADYVIPQLSNGQ 286 (1088)
T ss_pred hhHHHHHhhhcchh
Confidence 99877777776555
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.83 E-value=1.6e-06 Score=104.00 Aligned_cols=277 Identities=7% Similarity=-0.059 Sum_probs=205.7
Q ss_pred hhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccc
Q 003768 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (796)
Q Consensus 161 ~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~ 240 (796)
...++.++|...|+.+.... |+ +...|..+-..+.+.|++++|+..|+++.... +-+...+..+..++.
T Consensus 87 l~~g~~~~A~~~l~~~l~~~--P~-----~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~--- 155 (656)
T PRK15174 87 LASSQPDAVLQVVNKLLAVN--VC-----QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLV--- 155 (656)
T ss_pred hhcCCHHHHHHHHHHHHHhC--CC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH---
Confidence 35789999999999995432 21 23567777889999999999999999998642 234667778888888
Q ss_pred cCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcc
Q 003768 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (796)
Q Consensus 241 ~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ 320 (796)
..|+.++|...+. .+... .-.+...+..+ .. +...|++++|..+++.+....-.++..
T Consensus 156 -------~~g~~~eA~~~~~-------~~~~~-~P~~~~a~~~~-~~------l~~~g~~~eA~~~~~~~l~~~~~~~~~ 213 (656)
T PRK15174 156 -------LMDKELQAISLAR-------TQAQE-VPPRGDMIATC-LS------FLNKSRLPEDHDLARALLPFFALERQE 213 (656)
T ss_pred -------HCCChHHHHHHHH-------HHHHh-CCCCHHHHHHH-HH------HHHcCCHHHHHHHHHHHHhcCCCcchh
Confidence 7899999999884 33221 11122222222 23 667899999999999987764222222
Q ss_pred eec--------cchhhhHHhhhhcC---CCC-cccccccccccccchhhHHHHHHhccCHHH----HHHHHHHHHhCCCC
Q 003768 321 MKL--------NSQLLDGRSNLERG---PDD-QSRKKDWSIDNQDADEIRLSEDAKKYAFQR----GFEIYEKMCLDEVP 384 (796)
Q Consensus 321 ty~--------~g~~~~A~~l~~~m---~pd-~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~----A~~lf~~M~~~gi~ 384 (796)
.+. .|+..+|...+++. .|+ ...+ ..+-..|.+.|++++ |...|++..... +
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~-----------~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P 281 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALR-----------RSLGLAYYQSGRSREAKLQAAEHWRHALQFN-S 281 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH-----------HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-C
Confidence 211 68888888888876 333 3334 667788889999886 899999888753 3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHH-HH
Q 003768 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL-EA 462 (796)
Q Consensus 385 pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty-~~ 462 (796)
-+..++..+...+.+.|++++|...+++.... .|+ ...+..+-..|.+.|+.++|.+.++.+.+.. |+...+ ..
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~ 357 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRY 357 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHH
Confidence 46778999999999999999999999998865 355 3456667788999999999999999998754 665443 33
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 003768 463 LLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 463 LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+..++...|+.++|...|++..+.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 456789999999999999998776
No 19
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.64 E-value=5.9e-07 Score=104.00 Aligned_cols=219 Identities=14% Similarity=0.065 Sum_probs=154.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC-CcchhhhcccCccc
Q 003768 212 RLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMID 290 (796)
Q Consensus 212 ~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~LI~~~~~ 290 (796)
.++-.|...|+.||.+||.+||.-|| ..|+++.|- +|. -|.-+ ..+ +...+++++.+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc----------~~gdieaat-if~-------fm~~k-sLpv~e~vf~~lv~s--- 68 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYC----------TKGDIEAAT-IFP-------FMEIK-SLPVREGVFRGLVAS--- 68 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHc----------ccCCCcccc-chh-------hhhcc-cccccchhHHHHHhc---
Confidence 45677889999999999999999999 778888877 884 34333 555 66779999999
Q ss_pred cccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHH
Q 003768 291 KLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370 (796)
Q Consensus 291 ~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~ 370 (796)
..+.++.+.+. .|-.-|| +.+..+|...|++.-
T Consensus 69 ---h~~And~Enpk-----------ep~aDty---------------------------------t~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 69 ---HKEANDAENPK-----------EPLADTY---------------------------------TNLLKAYRIHGDLIL 101 (1088)
T ss_pred ---ccccccccCCC-----------CCchhHH---------------------------------HHHHHHHHhccchHH
Confidence 88888887776 3555566 777777777776433
Q ss_pred HHHHHHH-HH-------hCCC-----------------CCCHHHHHHHHHHHHhcCChHHHHHH----------------
Q 003768 371 GFEIYEK-MC-------LDEV-----------------PMNEASLTAVGRMAMSMGDGDMAFDM---------------- 409 (796)
Q Consensus 371 A~~lf~~-M~-------~~gi-----------------~pd~~ty~~LI~~~~~~g~~~~A~~l---------------- 409 (796)
++..++ |. ..|+ -||.. ++|....-.|.++.+.++
T Consensus 102 -fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~~p~~vf 177 (1088)
T KOG4318|consen 102 -FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVF 177 (1088)
T ss_pred -HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCcccccchHHHH
Confidence 222222 11 1111 12222 122222223333333322
Q ss_pred --------------HHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 003768 410 --------------VKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475 (796)
Q Consensus 410 --------------~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~ 475 (796)
....+...-.|+..+|..++++-..+|+++.|..++.+|.+.|+..+..-|-.||-+ .+...-
T Consensus 178 Lrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~ 254 (1088)
T KOG4318|consen 178 LRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQV 254 (1088)
T ss_pred HHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchH
Confidence 222222212599999999999999999999999999999999999999988899877 788888
Q ss_pred HHHHHHHHHhCCCCCChhHHHH-HHHHHhchH
Q 003768 476 VYYLLHKLRTSVRKVSPSTADV-IAKWFNSKE 506 (796)
Q Consensus 476 A~~ll~~M~~~~~~~~p~t~~~-I~~~~~~~~ 506 (796)
+..++..|+..+..|..+|+.. +...++++.
T Consensus 255 ~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 255 FEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999966666668766 777777655
No 20
>PF12854 PPR_1: PPR repeat
Probab=98.61 E-value=4.4e-08 Score=69.53 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=17.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003768 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRM 413 (796)
Q Consensus 382 gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M 413 (796)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 21
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=3.8e-08 Score=69.86 Aligned_cols=32 Identities=28% Similarity=0.645 Sum_probs=20.0
Q ss_pred CCCCCcccHHHHHHHHHHcCChHHHHHHHHHH
Q 003768 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (796)
Q Consensus 417 gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M 448 (796)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 22
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.59 E-value=2.1e-07 Score=99.73 Aligned_cols=256 Identities=17% Similarity=0.132 Sum_probs=103.8
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~P-d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.-+.++.++|+++++.-.... ..| |..-|..+-..+-..++.+.|++.|+++...+-. +...|..++.. .
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~- 88 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-L- 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccc-ccccccccccc-c-
Confidence 336688899999996542111 112 2234444444556678999999999999876543 55566666666 4
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCC-CC
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ-FS 317 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi-~P 317 (796)
..++.++|..++. +.-+. ..+...+..++.. +.+.++++++..++++.....- .+
T Consensus 89 ---------~~~~~~~A~~~~~-------~~~~~--~~~~~~l~~~l~~------~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (280)
T PF13429_consen 89 ---------QDGDPEEALKLAE-------KAYER--DGDPRYLLSALQL------YYRLGDYDEAEELLEKLEELPAAPD 144 (280)
T ss_dssp -----------------------------------------------H-------HHHTT-HHHHHHHHHHHHH-T---T
T ss_pred ---------ccccccccccccc-------ccccc--ccccchhhHHHHH------HHHHhHHHHHHHHHHHHHhccCCCC
Confidence 5677888888773 22111 1244446677777 8888999999999988765432 22
Q ss_pred CcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003768 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA 397 (796)
Q Consensus 318 d~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~ 397 (796)
+...| ..+-..+.+.|+.++|.++|++..+.. +-|....+.++..+
T Consensus 145 ~~~~~---------------------------------~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~l 190 (280)
T PF13429_consen 145 SARFW---------------------------------LALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLL 190 (280)
T ss_dssp -HHHH---------------------------------HHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHH
T ss_pred CHHHH---------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 22223 556677788999999999999888763 22577888899999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHH
Q 003768 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRV 476 (796)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A 476 (796)
...|+.+++..+++...+.. ..|...+..+-.+|...|+.++|...|+...... | |......+-+++...|+.++|
T Consensus 191 i~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~--p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 191 IDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN--PDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp CTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHT--------
T ss_pred HHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc--ccccccccccccccccccccccc
Confidence 99999999999998877663 4566677888889999999999999999987754 5 677778888999999999999
Q ss_pred HHHHHHHHh
Q 003768 477 YYLLHKLRT 485 (796)
Q Consensus 477 ~~ll~~M~~ 485 (796)
.++..+.-.
T Consensus 268 ~~~~~~~~~ 276 (280)
T PF13429_consen 268 LRLRRQALR 276 (280)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 988776543
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.57 E-value=1.6e-05 Score=95.02 Aligned_cols=254 Identities=11% Similarity=0.050 Sum_probs=186.7
Q ss_pred CCcchHHHHHHHHHhcCCCCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcccc
Q 003768 164 TNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAV 241 (796)
Q Consensus 164 ~~~~~A~~vf~~M~~~g~~~~~g~~P-d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~a~~~~~~ 241 (796)
+..++|.+.|+.....+. ..| +...|+.+-..+...|++++|+..|+..... .|+ ...|..+-..+.
T Consensus 308 ~~y~~A~~~~~~al~~~~-----~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~---- 376 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGK-----LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNL---- 376 (615)
T ss_pred hhHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHH----
Confidence 466789999998865441 223 3356777778888999999999999998864 344 456666666666
Q ss_pred CCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcce
Q 003768 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (796)
Q Consensus 242 ~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~t 321 (796)
..|++++|...|. +.... .-.+...|..+-.. +...|++++|...|++..+.. |+...
T Consensus 377 ------~~g~~~eA~~~~~-------~al~~-~p~~~~~~~~lg~~------~~~~g~~~~A~~~~~kal~l~--P~~~~ 434 (615)
T TIGR00990 377 ------ELGDPDKAEEDFD-------KALKL-NSEDPDIYYHRAQL------HFIKGEFAQAGKDYQKSIDLD--PDFIF 434 (615)
T ss_pred ------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHcC--ccCHH
Confidence 7799999999995 33322 11245567777777 888999999999998887653 43221
Q ss_pred eccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003768 322 KLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401 (796)
Q Consensus 322 y~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g 401 (796)
. | ..+-..+.+.|++++|+..|++..... +-+...|+.+-..+...|
T Consensus 435 ~---------------------~-----------~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 435 S---------------------H-----------IQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQN 481 (615)
T ss_pred H---------------------H-----------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcc
Confidence 1 1 456677888999999999999988642 345788999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCc--c------cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003768 402 DGDMAFDMVKRMKSLGINPRL--R------SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (796)
Q Consensus 402 ~~~~A~~l~~~M~~~gi~Pd~--~------ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~ 473 (796)
++++|...|+...... |+. . .++..+..+...|++++|.+++++..... .-+...+..|...+.+.|++
T Consensus 482 ~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 482 KFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred CHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCH
Confidence 9999999999876542 321 1 11222233444699999999999987754 22345788999999999999
Q ss_pred hHHHHHHHHHHhC
Q 003768 474 DRVYYLLHKLRTS 486 (796)
Q Consensus 474 ~~A~~ll~~M~~~ 486 (796)
++|..+|++..+.
T Consensus 559 ~eAi~~~e~A~~l 571 (615)
T TIGR00990 559 DEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.53 E-value=3.3e-05 Score=92.43 Aligned_cols=293 Identities=11% Similarity=-0.000 Sum_probs=192.7
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
..-+.++.++|...|+..+. ..|+...|..+-.+|.+.|++++|++.++...+.. +-+...|..+=.++.
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~--------~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~- 205 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIE--------CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD- 205 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHh--------cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH-
Confidence 34567889999999999753 33555788888899999999999999999988653 224556766767777
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCc-----------------------hhhhccCCCCCcchhhhc-----------
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNS-----------------------TELGDSRDMDNNGQLDYG----------- 284 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s-----------------------~em~~~~gv~d~~tyn~L----------- 284 (796)
..|++++|..-|....... .+..+. .-.+..++..+
T Consensus 206 ---------~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 275 (615)
T TIGR00990 206 ---------GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILET-KPENLPSVTFVGNYLQSFRPKP 275 (615)
T ss_pred ---------HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHccCCc
Confidence 7788888876542110000 000000 00000000000
Q ss_pred ---------------ccCccc----cccccccCChHHHHHHHHHHHHcC-CCCCc-ceec--------cchhhhHHhhhh
Q 003768 285 ---------------SSPMID----KLESNSSYRFDDLDSTFNEKENLG-QFSNG-HMKL--------NSQLLDGRSNLE 335 (796)
Q Consensus 285 ---------------I~~~~~----~~~~~~~g~~~~A~~lf~eM~~~G-i~Pd~-~ty~--------~g~~~~A~~l~~ 335 (796)
..+... ..+....+.+++|...|++..+.+ ..|+. ..|. .|+.++|...++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 276 RPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred chhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 000000 000112357888999999888765 33432 2222 677888888877
Q ss_pred cC---CCCc-ccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003768 336 RG---PDDQ-SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVK 411 (796)
Q Consensus 336 ~m---~pd~-~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~ 411 (796)
.. .|+. ..| ..+-..+...|++++|...|++..... +-+..+|..+...+...|++++|...|+
T Consensus 356 kal~l~P~~~~~~-----------~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 356 KSIELDPRVTQSY-----------IKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred HHHHcCCCcHHHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 75 4442 244 556666778888888888888877653 3456788888888888889999988888
Q ss_pred HHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 412 RMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 412 ~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+..+. .| +...|..+-..+.+.|+.++|...|+...... .-+...|+.+-..+...|++++|...|++....
T Consensus 424 kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 424 KSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 87665 34 34556666677778888889988888877642 224667788888888888888888888887665
No 25
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.48 E-value=3.6e-05 Score=86.97 Aligned_cols=268 Identities=7% Similarity=-0.024 Sum_probs=154.0
Q ss_pred cCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHccc
Q 003768 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL--YLCSSAA 240 (796)
Q Consensus 163 ~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL--~a~~~~~ 240 (796)
.|+...|++.+..-... ...|. ..|-..-.+..+.|+++.|.+.|.++.+. .|+...+..+. ..+.
T Consensus 97 eGd~~~A~k~l~~~~~~------~~~p~-l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l--- 164 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH------AEQPV-VNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQL--- 164 (398)
T ss_pred CCCHHHHHHHHHHHHhc------ccchH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHH---
Confidence 47888888777765221 11232 44544455668999999999999999863 56654443222 3344
Q ss_pred cCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcc
Q 003768 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (796)
Q Consensus 241 ~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ 320 (796)
..|+.+.|...+. ++.+. .-.+......+... |.+.|++++|..++..+.+.+..++..
T Consensus 165 -------~~g~~~~Al~~l~-------~~~~~-~P~~~~al~ll~~~------~~~~gdw~~a~~~l~~l~k~~~~~~~~ 223 (398)
T PRK10747 165 -------ARNENHAARHGVD-------KLLEV-APRHPEVLRLAEQA------YIRTGAWSSLLDILPSMAKAHVGDEEH 223 (398)
T ss_pred -------HCCCHHHHHHHHH-------HHHhc-CCCCHHHHHHHHHH------HHHHHhHHHHHHHHHHHHHcCCCCHHH
Confidence 6799999999994 44443 21255667888888 999999999999999999887553221
Q ss_pred -------eec--------cchhhhHHhhhhcC----CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhC
Q 003768 321 -------MKL--------NSQLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD 381 (796)
Q Consensus 321 -------ty~--------~g~~~~A~~l~~~m----~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~ 381 (796)
+|. .........+++.. ..+.-.. ..+...+...|+.++|.+++++..+.
T Consensus 224 ~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~-----------~~~A~~l~~~g~~~~A~~~L~~~l~~ 292 (398)
T PRK10747 224 RAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQ-----------VAMAEHLIECDDHDTAQQIILDGLKR 292 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHH-----------HHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 110 00001111111111 1122222 44555566666666666666655552
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHH
Q 003768 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460 (796)
Q Consensus 382 gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~-ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty 460 (796)
.||... .++.+.+..++.+++.+..+...+. .|+.. .+.++=..|.+.|++++|.+.|+...+.. |+..+|
T Consensus 293 --~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~~ 364 (398)
T PRK10747 293 --QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYDY 364 (398)
T ss_pred --CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHH
Confidence 333311 1223333446666666666665543 23333 23344445556666666666666666533 666666
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 003768 461 EALLRVSVEAGKGDRVYYLLHK 482 (796)
Q Consensus 461 ~~LI~~~~~~G~~~~A~~ll~~ 482 (796)
..|-..+.+.|+.++|.+++.+
T Consensus 365 ~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 365 AWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666666666665554
No 26
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.40 E-value=0.00011 Score=94.20 Aligned_cols=296 Identities=10% Similarity=-0.019 Sum_probs=187.3
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
...+.++.++|...|++..... | .+...+..+-..+.+.|++++|++.|++..+.. +.+...+..+...+..
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~--P-----~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD--N-----TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3456788999999999986532 1 233667778889999999999999999998643 2234444444333321
Q ss_pred cccC--------------------------------CcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhccc
Q 003768 239 AAVG--------------------------------VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSS 286 (796)
Q Consensus 239 ~~~~--------------------------------~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~ 286 (796)
.... +..+...|+.++|...|. +.... .-.+...+..+-.
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~-------~Al~~-~P~~~~~~~~LA~ 503 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR-------QRLAL-DPGSVWLTYRLAQ 503 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHH
Confidence 0000 000114577777777774 32221 1113344555656
Q ss_pred CccccccccccCChHHHHHHHHHHHHcCCCCCcc--eec-------cchhhhHHhhhhcCCCCccccccccccc---ccc
Q 003768 287 PMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH--MKL-------NSQLLDGRSNLERGPDDQSRKKDWSIDN---QDA 354 (796)
Q Consensus 287 ~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~--ty~-------~g~~~~A~~l~~~m~pd~~ty~~~~~~~---~~~ 354 (796)
. |.+.|++++|...|++..+.. |+.. .|. .++..+|...++.+.....+-..-.+.. ...
T Consensus 504 ~------~~~~G~~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 504 D------LRQAGQRSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred H------HHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 6 888889999999888877642 3322 111 5667777777776622110000000000 000
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH
Q 003768 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (796)
Q Consensus 355 ~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~ 434 (796)
.-.+...+...|+.++|.++++. .+.+...+..|...+.+.|+.++|...|++..+.. ..+...+..+...|..
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 01234567778888888888772 24455667778888888889999988888877652 2346677778888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 435 NGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~pd-~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|+.++|.++++...+. .|+ ...+..+-.++...|+.++|..+++++...
T Consensus 650 ~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 650 QGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 88888888888877654 243 445566667777888888888888888765
No 27
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.40 E-value=5.2e-05 Score=76.97 Aligned_cols=200 Identities=18% Similarity=0.116 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhh
Q 003768 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (796)
Q Consensus 191 ~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~ 270 (796)
...+..+...+.+.|++++|.+.|+++.+.. +-+...+..+-..+. ..|+.++|...+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~----------~~~~~~~A~~~~~---------- 89 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQ----------QLGELEKAEDSFR---------- 89 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCCHHHHHHHHH----------
Confidence 3567777788889999999999999887643 223455555555555 5566666666663
Q ss_pred ccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC-cceeccchhhhHHhhhhcCCCCccccccccc
Q 003768 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (796)
Q Consensus 271 ~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd-~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~ 349 (796)
+..+.. |+ ...+
T Consensus 90 --------------------------------------~al~~~--~~~~~~~--------------------------- 102 (234)
T TIGR02521 90 --------------------------------------RALTLN--PNNGDVL--------------------------- 102 (234)
T ss_pred --------------------------------------HHHhhC--CCCHHHH---------------------------
Confidence 222221 11 1111
Q ss_pred ccccchhhHHHHHHhccCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHH
Q 003768 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (796)
Q Consensus 350 ~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~L 428 (796)
..+...+...|++++|.+.|++...... ......+..+...+...|+.++|...+++..... ..+...+..+
T Consensus 103 ------~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 175 (234)
T TIGR02521 103 ------NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLEL 175 (234)
T ss_pred ------HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHH
Confidence 3344555666777777777777665322 1233456666677777777777777777766542 1234556666
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 429 I~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
...+...|+.++|.+.+++.... ...+...+..+...+...|+.++|..+.+.+...
T Consensus 176 a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 176 AELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 77777778888887777777665 2345566666777777778888877777766543
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.38 E-value=0.00012 Score=89.67 Aligned_cols=282 Identities=8% Similarity=-0.028 Sum_probs=183.3
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.....++..+|..++++....- ..+...+..+...+.+.|+.++|+..+++..+. -+.+.. +..+-.++.
T Consensus 58 ~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~- 127 (765)
T PRK10049 58 AYRNLKQWQNSLTLWQKALSLE-------PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYK- 127 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHH-
Confidence 4456788888999999864321 122355667778888999999999999998865 233444 666666666
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd 318 (796)
..|+.++|...+. +.... .-.+...+..+... +...+..+.|...++.... .|+
T Consensus 128 ---------~~g~~~~Al~~l~-------~al~~-~P~~~~~~~~la~~------l~~~~~~e~Al~~l~~~~~---~p~ 181 (765)
T PRK10049 128 ---------RAGRHWDELRAMT-------QALPR-APQTQQYPTEYVQA------LRNNRLSAPALGAIDDANL---TPA 181 (765)
T ss_pred ---------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCChHHHHHHHHhCCC---CHH
Confidence 6788999998884 33332 11133334445555 6677888888877764432 222
Q ss_pred cce--------------e----c-cchh---hhHHhhhhcC------CCCcc-cccccccccccchhhHHHHHHhccCHH
Q 003768 319 GHM--------------K----L-NSQL---LDGRSNLERG------PDDQS-RKKDWSIDNQDADEIRLSEDAKKYAFQ 369 (796)
Q Consensus 319 ~~t--------------y----~-~g~~---~~A~~l~~~m------~pd~~-ty~~~~~~~~~~~n~lI~~~~k~g~~~ 369 (796)
... + . .++. ++|+..++.+ .|+.. .+. ......+..+...|+++
T Consensus 182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~-------~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ-------RARIDRLGALLARDRYK 254 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH-------HHHHHHHHHHHHhhhHH
Confidence 100 0 0 1122 4555555554 12211 110 00001133456778999
Q ss_pred HHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----cccHHHHHHHHHHcCChHHHHH
Q 003768 370 RGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-----LRSYGPALSVFCNNGDVDKACS 443 (796)
Q Consensus 370 ~A~~lf~~M~~~gi~-pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-----~~ty~~LI~~~~~~G~~~~A~~ 443 (796)
+|...|+.+.+.+-. |+-.- -.+..+|...|++++|..+|+++.... |. ...+..|..++...|+.++|.+
T Consensus 255 eA~~~~~~ll~~~~~~P~~a~-~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPWAQ-RWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred HHHHHHHHhhccCCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 999999999988632 43322 225778999999999999999987542 32 2345566778899999999999
Q ss_pred HHHHHHhCC-----------CCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 444 VEEHMLEHG-----------VYPEE---PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 444 l~~~M~~~g-----------v~pd~---~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+++.+.+.. -.|+. ..+..+...+...|+.++|..+|+++...
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999998752 12342 24456777888999999999999999876
No 29
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.37 E-value=5.3e-05 Score=76.95 Aligned_cols=179 Identities=12% Similarity=0.035 Sum_probs=134.5
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCc-ceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~-~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~ 372 (796)
+...|++++|...+++..... |+. ..+ ..+...|...|++++|.
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~--p~~~~~~---------------------------------~~la~~~~~~~~~~~A~ 85 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHD--PDDYLAY---------------------------------LALALYYQQLGELEKAE 85 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--cccHHHH---------------------------------HHHHHHHHHcCCHHHHH
Confidence 778889999999988887653 442 222 66777888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 373 ~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
+.|++..... +.+...+..+...+...|++++|...+++.......| ....+..+-..+...|+.++|.+.+++..+.
T Consensus 86 ~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 86 DSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999888764 3456788889999999999999999999988753222 3445666778889999999999999998875
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH-HHHHHhchHHHHh
Q 003768 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARL 510 (796)
Q Consensus 452 gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~-I~~~~~~~~~~~a 510 (796)
. ..+...+..+...+...|+.++|..++++.... ....+..+.. ..-+...+...++
T Consensus 165 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a 222 (234)
T TIGR02521 165 D-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAA 222 (234)
T ss_pred C-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHH
Confidence 4 224567888999999999999999999998876 2223333333 4444444444333
No 30
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.34 E-value=6e-05 Score=96.52 Aligned_cols=250 Identities=12% Similarity=0.051 Sum_probs=180.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCC
Q 003768 196 VELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD 274 (796)
Q Consensus 196 ~lI~a~~k~G~~~~A~~lf~~M~~~Gi~p-d~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~g 274 (796)
.+-..+...|++++|++.|++..+.. | +...+..+-..|. +.|+.++|...+. +.... .
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~----------~~G~~~~A~~~l~-------~al~~-~ 525 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLR----------QAGQRSQADALMR-------RLAQQ-K 525 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHHc-C
Confidence 34456778999999999999998753 4 4556666777777 7899999999995 33332 1
Q ss_pred CCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcce----------------e-ccchhhhHHhhhhcC
Q 003768 275 MDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM----------------K-LNSQLLDGRSNLERG 337 (796)
Q Consensus 275 v~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~t----------------y-~~g~~~~A~~l~~~m 337 (796)
-.+...+-.+.-. +...++.++|...++.+......++... + ..|+.++|..+++.-
T Consensus 526 P~~~~~~~a~al~------l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~ 599 (1157)
T PRK11447 526 PNDPEQVYAYGLY------LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ 599 (1157)
T ss_pred CCCHHHHHHHHHH------HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 1122222222223 5567889999988877543322222111 0 167888888888865
Q ss_pred CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003768 338 PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (796)
Q Consensus 338 ~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g 417 (796)
..+...+ ..+-..+.+.|+.++|.+.|++..... +-+..++..++..|...|+.++|.++++...+.
T Consensus 600 p~~~~~~-----------~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~- 666 (1157)
T PRK11447 600 PPSTRID-----------LTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT- 666 (1157)
T ss_pred CCCchHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 4444444 667788899999999999999998864 446889999999999999999999999977653
Q ss_pred CCCC-cccHHHHHHHHHHcCChHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 418 INPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YP---EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 418 i~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv--~p---d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
.|+ ...+..+-..+...|+.++|.++++.+....- .| +...+..+-..+...|+.++|...++....
T Consensus 667 -~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 667 -ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred -CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444 34455566778899999999999999887532 12 224556667788899999999999988753
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.33 E-value=0.00011 Score=83.37 Aligned_cols=273 Identities=10% Similarity=0.004 Sum_probs=156.1
Q ss_pred hhcCCcchHHHHHHHHHhcCCCCCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH
Q 003768 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY--HYNVLLYLCS 237 (796)
Q Consensus 161 ~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd-~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~--tyn~LL~a~~ 237 (796)
...++...|++.+...... .|+ ...|-..-.++.+.|+.+.|.+.|.++.+.- |+.. ..-..-..+.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILL 164 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHH
Confidence 3568888999999776221 232 1334444567778899999999999987543 4432 2222344444
Q ss_pred ccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCC
Q 003768 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (796)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~P 317 (796)
..|+.+.|...+. ++.+. .-.+...+..+... +.+.|++++|.+++..+.+.++.+
T Consensus 165 ----------~~~~~~~Al~~l~-------~l~~~-~P~~~~~l~ll~~~------~~~~~d~~~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 165 ----------AQNELHAARHGVD-------KLLEM-APRHKEVLKLAEEA------YIRSGAWQALDDIIDNMAKAGLFD 220 (409)
T ss_pred ----------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHcCCCC
Confidence 6799999999994 55553 22255567777778 999999999999999999987543
Q ss_pred Ccceec------cchhhhH-----HhhhhcC---C-----CCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHH
Q 003768 318 NGHMKL------NSQLLDG-----RSNLERG---P-----DDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM 378 (796)
Q Consensus 318 d~~ty~------~g~~~~A-----~~l~~~m---~-----pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M 378 (796)
...... .+.+.++ ...+..+ . .+...+ -.+...+...|+.++|.+++++.
T Consensus 221 ~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~-----------~~~a~~l~~~g~~~~A~~~l~~~ 289 (409)
T TIGR00540 221 DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALK-----------IALAEHLIDCDDHDSAQEIIFDG 289 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHH-----------HHHHHHHHHCCChHHHHHHHHHH
Confidence 332110 1111111 1122222 1 133333 55556666666666666666666
Q ss_pred HhCCCCCCHHHH-HHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCcc--cH-HHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003768 379 CLDEVPMNEASL-TAVGRMA--MSMGDGDMAFDMVKRMKSLGINPRLR--SY-GPALSVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 379 ~~~gi~pd~~ty-~~LI~~~--~~~g~~~~A~~l~~~M~~~gi~Pd~~--ty-~~LI~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
.+.. ||.... -.++..+ ...++.+.+.+.++...+. .|+.. .+ .++=..+.+.|++++|.+.|+......
T Consensus 290 l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~ 365 (409)
T TIGR00540 290 LKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK 365 (409)
T ss_pred HhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh
Confidence 6542 222210 0022222 2235555566666554433 34433 22 233344556666666666666433333
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003768 453 VYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (796)
Q Consensus 453 v~pd~~ty~~LI~~~~~~G~~~~A~~ll~~ 482 (796)
..|+...+..|-..+.+.|+.++|.+++++
T Consensus 366 ~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 366 EQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 346666666666666666666666666654
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.32 E-value=3.1e-06 Score=90.72 Aligned_cols=251 Identities=15% Similarity=0.084 Sum_probs=105.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCC
Q 003768 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM 275 (796)
Q Consensus 196 ~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv 275 (796)
.+-..+.+.|++++|+++++.-......|+...|-.++..++. ..|+.+.|...+. .+... +-
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~---------~~~~~~~A~~ay~-------~l~~~-~~ 75 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAW---------SLGDYDEAIEAYE-------KLLAS-DK 75 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc---------ccccccccccccc-------ccccc-cc
Confidence 3356677899999999999776555435666666655554442 4577888888884 33332 11
Q ss_pred CCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccch
Q 003768 276 DNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDAD 355 (796)
Q Consensus 276 ~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~ 355 (796)
.+...+..++. +...+++++|..++.+.-++. ++...+
T Consensus 76 ~~~~~~~~l~~-------l~~~~~~~~A~~~~~~~~~~~--~~~~~l--------------------------------- 113 (280)
T PF13429_consen 76 ANPQDYERLIQ-------LLQDGDPEEALKLAEKAYERD--GDPRYL--------------------------------- 113 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccc-------ccccccccccccccccccccc--cccchh---------------------------------
Confidence 12222333333 246778888887776654432 222222
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFC 433 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~-gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~ 433 (796)
..++..+.+.++++++.++++.+... ....+...|..+...+.+.|+.++|..++++..+. .|+ ....+.++..+.
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLI 191 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 56777888999999999999998754 34568888999999999999999999999998775 464 667888999999
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhHHHH-HHHHHhchHHHHh
Q 003768 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTADV-IAKWFNSKEAARL 510 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~-~p~t~~~-I~~~~~~~~~~~a 510 (796)
..|+.+++.+++....... ..|...+..+-.+|...|+.++|..+|++.... .+ +|.+... ...+...|...+|
T Consensus 192 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT--------
T ss_pred HCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--cccccccccccccccccccccccc
Confidence 9999999999998887754 345567789999999999999999999998875 44 3433333 4444444544433
No 33
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.22 E-value=0.00063 Score=83.46 Aligned_cols=286 Identities=10% Similarity=-0.031 Sum_probs=184.9
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.+.+.++.++|...+++.... .| .+.. +..+-..+.+.|+.++|+..|+++.+..- -+...+..+..++.
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~--~P-----~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~- 161 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSG--AP-----DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALR- 161 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CC-----CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-
Confidence 345778999999999998543 12 2224 77888889999999999999999997532 23444455555555
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccC----CCC----CcchhhhcccCccccccccccCCh---HHHHHHH
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR----DMD----NNGQLDYGSSPMIDKLESNSSYRF---DDLDSTF 307 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~----gv~----d~~tyn~LI~~~~~~~~~~~~g~~---~~A~~lf 307 (796)
..|..++|...+... .... .+. ....-..+... ....+++ ++|...+
T Consensus 162 ---------~~~~~e~Al~~l~~~-------~~~p~~~~~l~~~~~~~~~r~~~~~~------~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 162 ---------NNRLSAPALGAIDDA-------NLTPAEKRDLEADAAAELVRLSFMPT------RSEKERYAIADRALAQY 219 (765)
T ss_pred ---------HCCChHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHhhcccc------cChhHHHHHHHHHHHHH
Confidence 567888888777411 1100 000 00001111122 3334445 6778788
Q ss_pred HHHHHc-CCCCCcc-e------------eccchhhhHHhhhhcCC---CCcccccccccccccchhhHHHHHHhccCHHH
Q 003768 308 NEKENL-GQFSNGH-M------------KLNSQLLDGRSNLERGP---DDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370 (796)
Q Consensus 308 ~eM~~~-Gi~Pd~~-t------------y~~g~~~~A~~l~~~m~---pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~ 370 (796)
+.+.+. .-.|+.. . +..++..+|...|+.+. ++.-.| ..-.+-..|...|++++
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~---------a~~~la~~yl~~g~~e~ 290 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW---------AQRWVASAYLKLHQPEK 290 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH---------HHHHHHHHHHhcCCcHH
Confidence 888754 2233321 1 22667788888888871 111111 00124567888999999
Q ss_pred HHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----------CCCC---cccHHHHHHHHH
Q 003768 371 GFEIYEKMCLDEVPM---NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----------INPR---LRSYGPALSVFC 433 (796)
Q Consensus 371 A~~lf~~M~~~gi~p---d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g-----------i~Pd---~~ty~~LI~~~~ 433 (796)
|..+|+++....-.. ....+..|..++...|++++|..+++.+.... -.|+ ...+..+...+.
T Consensus 291 A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~ 370 (765)
T PRK10049 291 AQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK 370 (765)
T ss_pred HHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH
Confidence 999999877543111 13456667778889999999999999887652 1122 123445666788
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..|+.++|.++++++.... .-+...+..+...+...|+.++|+..+++....
T Consensus 371 ~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 371 YSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 8899999999999987653 234667788888888999999999999988876
No 34
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.12 E-value=0.00016 Score=81.34 Aligned_cols=276 Identities=11% Similarity=0.015 Sum_probs=194.1
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.+.++++.++|+.+++.|++.. | -.+..|.-+-.++...|+.+.|...|.+..+ +.|+.+...+-+.-+-+
T Consensus 125 ~~kerg~~~~al~~y~~aiel~--p-----~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELK--P-----KFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcC--c-----hhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHH
Confidence 4567899999999999996532 1 1347899999999999999999999999886 45766655555544443
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd 318 (796)
..|++++|..-+. ...+.... =.+.|+-|=-. +-..|.+-.|..-|++-... .|+
T Consensus 196 ---------a~Grl~ea~~cYl------kAi~~qp~--fAiawsnLg~~------f~~~Gei~~aiq~y~eAvkl--dP~ 250 (966)
T KOG4626|consen 196 ---------AEGRLEEAKACYL------KAIETQPC--FAIAWSNLGCV------FNAQGEIWLAIQHYEEAVKL--DPN 250 (966)
T ss_pred ---------hhcccchhHHHHH------HHHhhCCc--eeeeehhcchH------HhhcchHHHHHHHHHHhhcC--CCc
Confidence 3578888888774 22222210 23446666555 88899999999999887664 344
Q ss_pred cc--eeccchhhhHHhhhhcC----------CCC-cccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCC
Q 003768 319 GH--MKLNSQLLDGRSNLERG----------PDD-QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM 385 (796)
Q Consensus 319 ~~--ty~~g~~~~A~~l~~~m----------~pd-~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~p 385 (796)
-. -+|.|.+.+....|++- .|+ .+.| .-|-.-|...|.++-|...+++-.+. .|
T Consensus 251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~-----------gNla~iYyeqG~ldlAI~~Ykral~~--~P 317 (966)
T KOG4626|consen 251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAH-----------GNLACIYYEQGLLDLAIDTYKRALEL--QP 317 (966)
T ss_pred chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhc-----------cceEEEEeccccHHHHHHHHHHHHhc--CC
Confidence 21 23344444444444432 444 3333 33444567889999999999987764 45
Q ss_pred C-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHH
Q 003768 386 N-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEA 462 (796)
Q Consensus 386 d-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~-~ty~~ 462 (796)
+ ...|+.|..++-..|++.+|.+.++..... .|+ ..+-+-|=..|...|.+++|..+|..-.+ +.|+- ...|.
T Consensus 318 ~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nN 393 (966)
T KOG4626|consen 318 NFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNN 393 (966)
T ss_pred CchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhh
Confidence 4 568999999999999999999999887654 333 34556677888888999999888887665 34543 45678
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 003768 463 LLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 463 LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
|-..|-+.|++++|..-+++..+
T Consensus 394 La~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 394 LASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred HHHHHHhcccHHHHHHHHHHHHh
Confidence 88888888999999888887664
No 35
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.07 E-value=0.0015 Score=69.02 Aligned_cols=241 Identities=16% Similarity=0.145 Sum_probs=155.9
Q ss_pred ccchhhhhhhhhHhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003768 147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRV-ELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (796)
Q Consensus 147 ~~~~~~~~l~~~~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~-lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd 225 (796)
-++-+|-.++ ...++|.++|-+|.+ ..|..+--+. |=+.|-+.|.++.|+++...+.++ ||
T Consensus 39 Yv~GlNfLLs-------~Q~dKAvdlF~e~l~--------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pd 100 (389)
T COG2956 39 YVKGLNFLLS-------NQPDKAVDLFLEMLQ--------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PD 100 (389)
T ss_pred HHhHHHHHhh-------cCcchHHHHHHHHHh--------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CC
Confidence 3444555555 567889999999944 2233343333 446677889999999999988864 33
Q ss_pred HHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHH
Q 003768 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDS 305 (796)
Q Consensus 226 ~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~ 305 (796)
.|++-=+.+.- ++.++ |-..|.+|.|..
T Consensus 101 -lT~~qr~lAl~------------------------------qL~~D---------------------ym~aGl~DRAE~ 128 (389)
T COG2956 101 -LTFEQRLLALQ------------------------------QLGRD---------------------YMAAGLLDRAED 128 (389)
T ss_pred -CchHHHHHHHH------------------------------HHHHH---------------------HHHhhhhhHHHH
Confidence 33433332222 12222 445555555555
Q ss_pred HHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCC
Q 003768 306 TFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM 385 (796)
Q Consensus 306 lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~p 385 (796)
+|..+.+.|. ..+.|+ --|+.-|-...++++|.++-+++.+.|-.+
T Consensus 129 ~f~~L~de~e----------fa~~Al------------------------qqLl~IYQ~treW~KAId~A~~L~k~~~q~ 174 (389)
T COG2956 129 IFNQLVDEGE----------FAEGAL------------------------QQLLNIYQATREWEKAIDVAERLVKLGGQT 174 (389)
T ss_pred HHHHHhcchh----------hhHHHH------------------------HHHHHHHHHhhHHHHHHHHHHHHHHcCCcc
Confidence 5555544321 011222 346777888888899998888888765444
Q ss_pred CHH----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH-HHHHHcCChHHHHHHHHHHHhCCCCCCHHHH
Q 003768 386 NEA----SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460 (796)
Q Consensus 386 d~~----ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI-~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty 460 (796)
..+ -|--|...+....+.+.|..++++-.+. .|+.+--+.++ .-+...|+..+|.+.++...+.+..--..+.
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence 322 3444555555677888888888876655 24433333333 4566788999999999988888755556677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 003768 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (796)
Q Consensus 461 ~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~ 493 (796)
..|..+|...|+.++....+.++.+...++.+.
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 888899999999999999998888885565554
No 36
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.06 E-value=0.00073 Score=82.42 Aligned_cols=286 Identities=9% Similarity=-0.029 Sum_probs=176.1
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~ 239 (796)
....++.++|.++++++.+... -+...+..++..+...++.++|++.+..+... .|+...|-.++..+.
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP-------~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~-- 180 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDP-------TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNR-- 180 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHH--
Confidence 3345777788888888844321 11244556677888888888888888888754 455555544433333
Q ss_pred ccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHH---------
Q 003768 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK--------- 310 (796)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM--------- 310 (796)
..++..+|+..+. ++.+. .-.+.-.+.-++.. ..+.|-...|.++..+-
T Consensus 181 --------~~~~~~~AL~~~e-------kll~~-~P~n~e~~~~~~~~------l~~~~~~~~a~~l~~~~p~~f~~~~~ 238 (822)
T PRK14574 181 --------ATDRNYDALQASS-------EAVRL-APTSEEVLKNHLEI------LQRNRIVEPALRLAKENPNLVSAEHY 238 (822)
T ss_pred --------hcchHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCcHHHHHHHHhCccccCHHHH
Confidence 2344445777773 44443 11122223333344 45555555555443321
Q ss_pred -----------HHcCCCCCcceec--cchhhhHHhhhhcC------CCCc-ccccccccccccchhhHHHHHHhccCHHH
Q 003768 311 -----------ENLGQFSNGHMKL--NSQLLDGRSNLERG------PDDQ-SRKKDWSIDNQDADEIRLSEDAKKYAFQR 370 (796)
Q Consensus 311 -----------~~~Gi~Pd~~ty~--~g~~~~A~~l~~~m------~pd~-~ty~~~~~~~~~~~n~lI~~~~k~g~~~~ 370 (796)
.+.+..|+.. .. -.-.+.|+.-++.+ .|.. ..|..+. -=.|-++.+.+++.+
T Consensus 239 ~~l~~~~~a~~vr~a~~~~~~-~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~-------~Drl~aL~~r~r~~~ 310 (822)
T PRK14574 239 RQLERDAAAEQVRMAVLPTRS-ETERFDIADKALADYQNLLTRWGKDPEAQADYQRAR-------IDRLGALLVRHQTAD 310 (822)
T ss_pred HHHHHHHHHHHHhhccccccc-chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHH-------HHHHHHHHHhhhHHH
Confidence 1111111110 00 00122233333332 1211 1121000 123557778899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCcccHHHHHHHHHHcCChHHHHHHH
Q 003768 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNNGDVDKACSVE 445 (796)
Q Consensus 371 A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g-----i~Pd~~ty~~LI~~~~~~G~~~~A~~l~ 445 (796)
+.+.|+.|...|.+.-..+--++.++|...+.+++|+.++.+..... ..++......|..+|...+++++|..++
T Consensus 311 vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l 390 (822)
T PRK14574 311 LIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFA 390 (822)
T ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHH
Confidence 99999999999977556788899999999999999999999986542 2334445678999999999999999999
Q ss_pred HHHHhCC-------------CCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 446 EHMLEHG-------------VYPEEPEL-EALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 446 ~~M~~~g-------------v~pd~~ty-~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+.+.+.- -.||-..+ ..++..+...|++.+|+++++++...
T Consensus 391 ~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~ 445 (822)
T PRK14574 391 VNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST 445 (822)
T ss_pred HHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9998731 11333333 34566688999999999999999876
No 37
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.06 E-value=4.9e-06 Score=58.69 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~ 226 (796)
++||++|++|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
No 38
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.01 E-value=0.0015 Score=81.43 Aligned_cols=229 Identities=8% Similarity=-0.021 Sum_probs=166.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhh
Q 003768 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (796)
Q Consensus 190 d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em 269 (796)
+...|..+-..+.. |+..+|+..|.+..... |+......+..++. ..|+.++|...|. .+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~----------~~Gr~eeAi~~~r-------ka 535 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAY----------QVEDYATALAAWQ-------KI 535 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHH----------HCCCHHHHHHHHH-------HH
Confidence 34566666656655 88999999888877543 66544333333334 6799999999994 33
Q ss_pred hccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCccccccccc
Q 003768 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (796)
Q Consensus 270 ~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~ 349 (796)
... -++...+..+... +.+.|++++|...++...... |+.... +
T Consensus 536 ~~~--~p~~~a~~~la~a------ll~~Gd~~eA~~~l~qAL~l~--P~~~~l---------------------~----- 579 (987)
T PRK09782 536 SLH--DMSNEDLLAAANT------AQAAGNGAARDRWLQQAEQRG--LGDNAL---------------------Y----- 579 (987)
T ss_pred hcc--CCCcHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcC--CccHHH---------------------H-----
Confidence 321 1122234444445 778899999999998887753 332111 0
Q ss_pred ccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-ccHHHH
Q 003768 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPA 428 (796)
Q Consensus 350 ~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~-~ty~~L 428 (796)
..+...+.+.|++++|...|++..+. .|+...|..+...+.+.|+.++|...+++.... .|+. ..++.+
T Consensus 580 ------~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nL 649 (987)
T PRK09782 580 ------WWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAAL 649 (987)
T ss_pred ------HHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 12222334559999999999998865 467889999999999999999999999998765 4554 455556
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 429 LSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 429 I~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
-..+...|+.++|.++++...+.. | +...+..+-.++...|++++|...|++....
T Consensus 650 G~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 650 GYALWDSGDIAQSREMLERAHKGL--PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 668999999999999999988753 5 4567788889999999999999999998866
No 39
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.97 E-value=1.2e-05 Score=56.66 Aligned_cols=33 Identities=30% Similarity=0.673 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 003768 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456 (796)
Q Consensus 424 ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd 456 (796)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 40
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.96 E-value=1e-05 Score=57.01 Aligned_cols=33 Identities=30% Similarity=0.585 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL 224 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~p 224 (796)
.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 699999999999999999999999999999998
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.88 E-value=0.0014 Score=74.18 Aligned_cols=219 Identities=8% Similarity=-0.033 Sum_probs=157.9
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY-------HYNV 231 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~-------tyn~ 231 (796)
.....++.+.|...++++.+.. | -+...+..+...|.+.|++++|.+++..+.+.+..++.. +|..
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~--P-----~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA--P-----RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--C-----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4456788999999999985433 1 123688889999999999999999999999887653321 2333
Q ss_pred HHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC-CcchhhhcccCccccccccccCChHHHHHHHHHH
Q 003768 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (796)
Q Consensus 232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (796)
++.... +....+...+++. ++.+. .+ +......+..+ +...|+.++|.+++++.
T Consensus 235 l~~~~~----------~~~~~~~l~~~w~-------~lp~~--~~~~~~~~~~~A~~------l~~~g~~~~A~~~L~~~ 289 (398)
T PRK10747 235 LMDQAM----------ADQGSEGLKRWWK-------NQSRK--TRHQVALQVAMAEH------LIECDDHDTAQQIILDG 289 (398)
T ss_pred HHHHHH----------HhcCHHHHHHHHH-------hCCHH--HhCCHHHHHHHHHH------HHHCCCHHHHHHHHHHH
Confidence 333322 2222334444442 22211 11 33345555666 88899999999999888
Q ss_pred HHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH
Q 003768 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (796)
Q Consensus 311 ~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty 390 (796)
.+.. ||.. -.++.+.+..++.+++.+..+...+.. +-|...+
T Consensus 290 l~~~--~~~~-----------------------------------l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~ 331 (398)
T PRK10747 290 LKRQ--YDER-----------------------------------LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLW 331 (398)
T ss_pred HhcC--CCHH-----------------------------------HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHH
Confidence 7642 2221 224455666799999999999988763 3456678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHH
Q 003768 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (796)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~ 449 (796)
.++-+.|.+.+++++|.+.|+...+. .|+..+|..+-..+.+.|+.++|.+++++-.
T Consensus 332 l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 332 STLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 89999999999999999999998865 6999999999999999999999999998653
No 42
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.86 E-value=1.9e-05 Score=55.53 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P 420 (796)
|||++|++|++.|+++.|+++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=0.0035 Score=71.86 Aligned_cols=274 Identities=14% Similarity=0.055 Sum_probs=191.0
Q ss_pred cchHHHHHHHHHhcCCCCCCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHccccC
Q 003768 166 DSGQYKVRGITDEKGSKKSKKDRSEQF-QLRVELDMCSKRGDVMGAIRLYDKAQRE-GI-KLGQYHYNVLLYLCSSAAVG 242 (796)
Q Consensus 166 ~~~A~~vf~~M~~~g~~~~~g~~Pd~~-tyn~lI~a~~k~G~~~~A~~lf~~M~~~-Gi-~pd~~tyn~LL~a~~~~~~~ 242 (796)
..+|...|+.+- . ..+|+. ...-+=.+|-..+++++|.++|+..++. .. .-+..+|.++|.-+-+.
T Consensus 335 ~~~A~~~~~klp------~--h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~--- 403 (638)
T KOG1126|consen 335 CREALNLFEKLP------S--HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE--- 403 (638)
T ss_pred HHHHHHHHHhhH------H--hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh---
Confidence 346677776641 1 123323 3333446788889999999999999853 22 24678899988766521
Q ss_pred CcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCC-Ccce
Q 003768 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS-NGHM 321 (796)
Q Consensus 243 ~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~P-d~~t 321 (796)
-++.++. +++.+. +-..-.||.++=++ |.-.++.+.|.+.|+.-... .| ..++
T Consensus 404 -----------v~Ls~La------q~Li~~-~~~sPesWca~GNc------fSLQkdh~~Aik~f~RAiQl--dp~faYa 457 (638)
T KOG1126|consen 404 -----------VALSYLA------QDLIDT-DPNSPESWCALGNC------FSLQKDHDTAIKCFKRAIQL--DPRFAYA 457 (638)
T ss_pred -----------HHHHHHH------HHHHhh-CCCCcHHHHHhcch------hhhhhHHHHHHHHHHHhhcc--CCccchh
Confidence 1222332 333332 11144789999999 99999999999999876554 35 5677
Q ss_pred ec--------cchhhhHHhhhhcC-CCCcccccccccccccchhhH---HHHHHhccCHHHHHHHHHHHHhCCCCCCHHH
Q 003768 322 KL--------NSQLLDGRSNLERG-PDDQSRKKDWSIDNQDADEIR---LSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS 389 (796)
Q Consensus 322 y~--------~g~~~~A~~l~~~m-~pd~~ty~~~~~~~~~~~n~l---I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t 389 (796)
|+ ....+.|...|+.- ..|.--| |++ =-.|.|.++++.|+-.|+...+-+ +-+.+.
T Consensus 458 yTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY-----------nAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi 525 (638)
T KOG1126|consen 458 YTLLGHESIATEEFDKAMKSFRKALGVDPRHY-----------NAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVI 525 (638)
T ss_pred hhhcCChhhhhHHHHhHHHHHHhhhcCCchhh-----------HHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhH
Confidence 77 55677777777765 6666666 554 345788899999999998877654 446777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHH
Q 003768 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSV 468 (796)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~-ty~~LI~~~~ 468 (796)
...+-..+-+.|+.|+|++++++.....-+--..-|. ....+...++.++|+..++++++ +.|++. .|-.|-..|.
T Consensus 526 ~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~-~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k 602 (638)
T KOG1126|consen 526 LCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH-RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYK 602 (638)
T ss_pred HhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH-HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHH
Confidence 7778888889999999999999877654333333444 44556667899999999999988 567765 5566677888
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChh
Q 003768 469 EAGKGDRVYYLLHKLRTSVRKVSPS 493 (796)
Q Consensus 469 ~~G~~~~A~~ll~~M~~~~~~~~p~ 493 (796)
+.|+.+.|+.-|.-+.+. .|++.
T Consensus 603 ~~~~~~~Al~~f~~A~~l--dpkg~ 625 (638)
T KOG1126|consen 603 RLGNTDLALLHFSWALDL--DPKGA 625 (638)
T ss_pred HHccchHHHHhhHHHhcC--CCccc
Confidence 999999998888887766 55543
No 44
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.84 E-value=0.0094 Score=74.38 Aligned_cols=148 Identities=11% Similarity=0.012 Sum_probs=109.9
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+...+.+.|++++|...|+...+.. +.+...+..+...+.+.|++++|...+++..+. .|+...|..+-..+.+.
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHC
Confidence 445566788999999999999998765 333334444444555669999999999988754 57788888888999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh--HHHHHHHHHhchHHHHh
Q 003768 436 GDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKEAARL 510 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~pd~-~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~--t~~~I~~~~~~~~~~~a 510 (796)
|+.++|...+++..+.. |+. ..++.|-..+...|+.++|..+|++..+. .|... .++.-..+...|...+|
T Consensus 623 G~~deA~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 623 HNVPAAVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999988864 654 45566667899999999999999998876 44332 33444444555544333
No 45
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.82 E-value=0.0015 Score=74.97 Aligned_cols=248 Identities=12% Similarity=0.027 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchh
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~---Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~e 268 (796)
.+..-+-..|...|+++.|..++.+..+. +.-.+.-...+++..|+. .|...+++++|..+|. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~------~y~~~~k~~eAv~ly~-------~ 266 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILAL------VYRSLGKYDEAVNLYE-------E 266 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHH------HHHHhccHHHHHHHHH-------H
Confidence 56666889999999999999999998743 111334445555554442 2336788888888884 3
Q ss_pred hhc----cCCCCC---cchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCc
Q 003768 269 LGD----SRDMDN---NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQ 341 (796)
Q Consensus 269 m~~----~~gv~d---~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~ 341 (796)
+.. ..|-.+ ..+++.|=.. |++.|++++|...+++-.+.--. ...-+.+++...+
T Consensus 267 AL~i~e~~~G~~h~~va~~l~nLa~l------y~~~GKf~EA~~~~e~Al~I~~~--~~~~~~~~v~~~l---------- 328 (508)
T KOG1840|consen 267 ALTIREEVFGEDHPAVAATLNNLAVL------YYKQGKFAEAEEYCERALEIYEK--LLGASHPEVAAQL---------- 328 (508)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH------HhccCChHHHHHHHHHHHHHHHH--hhccChHHHHHHH----------
Confidence 211 112222 2336666566 99999999998877654332000 0000012222222
Q ss_pred ccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003768 342 SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL---DEVPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMK 414 (796)
Q Consensus 342 ~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~---~gi~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~ 414 (796)
+.+..-++..+++++|..++....+ .-..++ .-+|+.|-..|-+.|++++|.++|++..
T Consensus 329 --------------~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 329 --------------SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred --------------HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 6677888899999999999886543 112233 3589999999999999999999999876
Q ss_pred HC----CC--CCC-cccHHHHHHHHHHcCChHHHHHHHHHH----HhCCCC-CC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 003768 415 SL----GI--NPR-LRSYGPALSVFCNNGDVDKACSVEEHM----LEHGVY-PE-EPELEALLRVSVEAGKGDRVYYLLH 481 (796)
Q Consensus 415 ~~----gi--~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M----~~~gv~-pd-~~ty~~LI~~~~~~G~~~~A~~ll~ 481 (796)
.. +- .+. -..++-|=..|.+.+....|.++|.+- +..|.. |+ ..+|..|...|.+.|+++.|.++.+
T Consensus 395 ~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 395 QILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred HHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 43 11 122 345666777888899999999998764 333432 33 4688999999999999999999998
Q ss_pred HHH
Q 003768 482 KLR 484 (796)
Q Consensus 482 ~M~ 484 (796)
...
T Consensus 475 ~~~ 477 (508)
T KOG1840|consen 475 KVL 477 (508)
T ss_pred HHH
Confidence 765
No 46
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.80 E-value=0.005 Score=75.26 Aligned_cols=94 Identities=11% Similarity=-0.002 Sum_probs=72.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHH
Q 003768 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-----VYPEEPELEALLRVS 467 (796)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g-----v~pd~~ty~~LI~~~ 467 (796)
.+-++...|+..++.+.++.|...|...-..+--.+-++|...+..++|..++..+.... ..++......|.-+|
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 344666788899999999999888765334466678888999999999999999886542 233455567888888
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 003768 468 VEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 468 ~~~G~~~~A~~ll~~M~~~ 486 (796)
...+++++|..+++.+...
T Consensus 378 ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HhcccHHHHHHHHHHHHhc
Confidence 9999999999999998874
No 47
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.67 E-value=3.8e-05 Score=52.75 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGI 222 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi 222 (796)
++||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999885
No 48
>PRK12370 invasion protein regulator; Provisional
Probab=97.66 E-value=0.0034 Score=74.16 Aligned_cols=240 Identities=10% Similarity=-0.062 Sum_probs=123.0
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhh
Q 003768 189 SEQFQLRVELDMCSK-----RGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVS 262 (796)
Q Consensus 189 Pd~~tyn~lI~a~~k-----~G~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~ 262 (796)
.+...|...+.+-.. .++.++|+++|++..+. .|+ ...|..|-.++......+ .....++.++|...+.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g-~~~~~~~~~~A~~~~~-- 328 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMG-IFDKQNAMIKAKEHAI-- 328 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcC-CcccchHHHHHHHHHH--
Confidence 445667777766432 23467999999998854 454 334444333332111000 0013345666666663
Q ss_pred ccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcc
Q 003768 263 TMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQS 342 (796)
Q Consensus 263 ~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ 342 (796)
+.... +-.+...|..+-.. +...|++++|...|++..+.. |+....
T Consensus 329 -----~Al~l-dP~~~~a~~~lg~~------~~~~g~~~~A~~~~~~Al~l~--P~~~~a-------------------- 374 (553)
T PRK12370 329 -----KATEL-DHNNPQALGLLGLI------NTIHSEYIVGSLLFKQANLLS--PISADI-------------------- 374 (553)
T ss_pred -----HHHhc-CCCCHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhC--CCCHHH--------------------
Confidence 22221 11133444444444 556667777777776665543 332111
Q ss_pred cccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc
Q 003768 343 RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (796)
Q Consensus 343 ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~ 422 (796)
| ..+-..+...|++++|...|++..+..-. +...+..++..+...|++++|...+++..+.. .|+.
T Consensus 375 -~-----------~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~ 440 (553)
T PRK12370 375 -K-----------YYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDN 440 (553)
T ss_pred -H-----------HHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccC
Confidence 1 34445566667777777777776654311 12222333444555677777777776665442 2332
Q ss_pred c-cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 423 R-SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE-LEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 423 ~-ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~t-y~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
. .+..+-..+...|+.++|.+.+..+... .|+... .+.|-..|+..| ++|...++.+.+
T Consensus 441 ~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 441 PILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 2 2444445556677777777777665443 233222 333444445555 356665555544
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=97.65 E-value=0.0083 Score=70.90 Aligned_cols=247 Identities=12% Similarity=0.023 Sum_probs=158.9
Q ss_pred cchHHHHHHHHHhcCCCCCCCCCCCH-HHHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003768 166 DSGQYKVRGITDEKGSKKSKKDRSEQ-FQLRVELDMCS---------KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235 (796)
Q Consensus 166 ~~~A~~vf~~M~~~g~~~~~g~~Pd~-~tyn~lI~a~~---------k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a 235 (796)
..+|..+|++-.+ ..|+- ..|..+-.++. ..+++++|...+++..+.. +-+...+..+=..
T Consensus 277 ~~~A~~~~~~Al~--------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~ 347 (553)
T PRK12370 277 LQQALKLLTQCVN--------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLI 347 (553)
T ss_pred HHHHHHHHHHHHh--------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4678888988743 22332 34443333332 3345899999999998653 2245666666555
Q ss_pred HHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCC
Q 003768 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ 315 (796)
Q Consensus 236 ~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi 315 (796)
+. ..|+.++|...|. +..+. +-.+...|..+-.. +...|++++|...+++..+..
T Consensus 348 ~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a~~~lg~~------l~~~G~~~eAi~~~~~Al~l~- 402 (553)
T PRK12370 348 NT----------IHSEYIVGSLLFK-------QANLL-SPISADIKYYYGWN------LFMAGQLEEALQTINECLKLD- 402 (553)
T ss_pred HH----------HccCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcC-
Confidence 55 6789999999995 33332 11144456666666 889999999999999987763
Q ss_pred CCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003768 316 FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGR 395 (796)
Q Consensus 316 ~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~ 395 (796)
|+...+ + ..+...+...|++++|.+.+++.....-+-+...+..+-.
T Consensus 403 -P~~~~~---------------------~-----------~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~ 449 (553)
T PRK12370 403 -PTRAAA---------------------G-----------ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVM 449 (553)
T ss_pred -CCChhh---------------------H-----------HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHH
Confidence 332111 0 2233346668899999999999876542224556777888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCccc-HHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCh
Q 003768 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRS-YGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGKG 473 (796)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~gi~Pd~~t-y~~LI~~~~~~G~~~~A~~l~~~M~~~-gv~pd~~ty~~LI~~~~~~G~~ 473 (796)
++...|+.++|...+.++... .|+..+ .+.+-..|+..| ++|...++.+.+. .-.+...-+..++ |.-.|+-
T Consensus 450 ~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~ 523 (553)
T PRK12370 450 FLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGEA 523 (553)
T ss_pred HHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhhh
Confidence 899999999999999887544 344333 344445667777 4888877777653 2233333333444 4445776
Q ss_pred hHHHHHHHHHHhC
Q 003768 474 DRVYYLLHKLRTS 486 (796)
Q Consensus 474 ~~A~~ll~~M~~~ 486 (796)
+.+..+ +++.+.
T Consensus 524 ~~~~~~-~~~~~~ 535 (553)
T PRK12370 524 IAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHH-HHhhcc
Confidence 666666 777765
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.62 E-value=0.005 Score=69.86 Aligned_cols=255 Identities=12% Similarity=0.020 Sum_probs=145.2
Q ss_pred hhhhhhhHhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003768 152 NREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNV 231 (796)
Q Consensus 152 ~~~l~~~~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~ 231 (796)
+..+.-+...+.++.+.|.+.++...+.- | .+.+..--+....+...|+++.|++.++.+.+.. +-+...+-.
T Consensus 120 ~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p----~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~l 192 (409)
T TIGR00540 120 NLIKAAEAAQQRGDEARANQHLEEAAELA--G----NDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKL 192 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C----cCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 33444445556677777877777763211 1 1111222233556666788888888888877664 224556666
Q ss_pred HHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhh-cccCccccccccccCChHHHHHHHHHH
Q 003768 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDY-GSSPMIDKLESNSSYRFDDLDSTFNEK 310 (796)
Q Consensus 232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~-LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (796)
+..++. ..|+.++|...+. .+.+. ++.+.-.+.. -+.+ .......+.-+.+...+..+
T Consensus 193 l~~~~~----------~~~d~~~a~~~l~-------~l~k~-~~~~~~~~~~l~~~a---~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 193 AEEAYI----------RSGAWQALDDIID-------NMAKA-GLFDDEEFADLEQKA---EIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHH----------HHhhHHHHHHHHH-------HHHHc-CCCCHHHHHHHHHHH---HHHHHHHHHHhcCHHHHHHH
Confidence 666666 6677777777773 33332 2221111100 0000 00001111111112222233
Q ss_pred HHcCCCC-----Ccceec--------cchhhhHHhhhhcC---CCCcccccccccccccchhhHHHH--HHhccCHHHHH
Q 003768 311 ENLGQFS-----NGHMKL--------NSQLLDGRSNLERG---PDDQSRKKDWSIDNQDADEIRLSE--DAKKYAFQRGF 372 (796)
Q Consensus 311 ~~~Gi~P-----d~~ty~--------~g~~~~A~~l~~~m---~pd~~ty~~~~~~~~~~~n~lI~~--~~k~g~~~~A~ 372 (796)
...- | +...+. .|+.++|...+++. .||.... .-.++.. ....++.+.+.
T Consensus 252 ~~~~--p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~----------~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 252 WKNQ--PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI----------SLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred HHHC--CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc----------hhHHHHHhhhcCCCChHHHH
Confidence 2221 1 111111 66666666666665 3443310 0012332 23346778888
Q ss_pred HHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHH
Q 003768 373 EIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (796)
Q Consensus 373 ~lf~~M~~~gi~pd~---~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M 448 (796)
+.++...+. .|+. ....++-..|.+.|++++|.+.|+........|+...+..+-..+.+.|+.++|.+++++-
T Consensus 320 ~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 320 KLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888777654 3433 5566889999999999999999996445555799999999999999999999999999874
No 51
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.58 E-value=0.008 Score=68.24 Aligned_cols=245 Identities=17% Similarity=0.115 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhh
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~p-d~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~ 270 (796)
.+|..+-+.+-..|++.+|+.+|+.|.+. +| .+..|.-+-.++. ..|+++.|.+.|. +.+.
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~----------~~~~~~~a~~~~~------~alq 178 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALV----------TQGDLELAVQCFF------EALQ 178 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHH----------hcCCCcccHHHHH------HHHh
Confidence 68888999999999999999999999965 34 4567777777777 6788888888884 2222
Q ss_pred ccCCCCCcch-hhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC-cceec--------cchhhhHHhhhhcC-CC
Q 003768 271 DSRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKL--------NSQLLDGRSNLERG-PD 339 (796)
Q Consensus 271 ~~~gv~d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd-~~ty~--------~g~~~~A~~l~~~m-~p 339 (796)
-....-++.+ ...|+++ .|++++|..-+.+-.+- .|. .+.|+ .|.+..|...|++- .-
T Consensus 179 lnP~l~ca~s~lgnLlka---------~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl 247 (966)
T KOG4626|consen 179 LNPDLYCARSDLGNLLKA---------EGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL 247 (966)
T ss_pred cCcchhhhhcchhHHHHh---------hcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC
Confidence 2111112222 3344333 78888888777665543 232 33444 89999999999886 21
Q ss_pred CcccccccccccccchhhHHHHHHhcc-------CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 003768 340 DQSRKKDWSIDNQDADEIRLSEDAKKY-------AFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVK 411 (796)
Q Consensus 340 d~~ty~~~~~~~~~~~n~lI~~~~k~g-------~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~ 411 (796)
| -.++++|...| .+++|...+..... ..| ..++|..|...|-..|.+|.|.+.++
T Consensus 248 d---------------P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Yk 310 (966)
T KOG4626|consen 248 D---------------PNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYK 310 (966)
T ss_pred C---------------CcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHH
Confidence 1 12344555444 55555555554433 345 46678888888999999999999999
Q ss_pred HHHHCCCCCC-cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 412 RMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 412 ~M~~~gi~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd-~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+..+. .|+ ...|+-|-.++-..|++.+|...+....... |+ ....+.|-..|...|.+++|..++..-.+-
T Consensus 311 ral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--p~hadam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 311 RALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--PNHADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred HHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 87654 566 4689999999999999999999999887754 43 456788889999999999999999887654
No 52
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.57 E-value=8.3e-05 Score=50.98 Aligned_cols=29 Identities=31% Similarity=0.620 Sum_probs=13.6
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003768 424 SYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 424 ty~~LI~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
||++||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44444444444444444444444444443
No 53
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.0058 Score=66.71 Aligned_cols=176 Identities=10% Similarity=0.059 Sum_probs=125.6
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCcceec-------cchhhhHHhhhhcC----CCCcccccccccccccchhhHHHHHHh
Q 003768 296 SSYRFDDLDSTFNEKENLGQFSNGHMKL-------NSQLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAK 364 (796)
Q Consensus 296 ~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~-------~g~~~~A~~l~~~m----~pd~~ty~~~~~~~~~~~n~lI~~~~k 364 (796)
-+|++++|.+.+.|-....-.-....|+ .|++++|+..|-.+ ..++.+. --+.+-|--
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl-----------~qianiye~ 570 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVL-----------VQIANIYEL 570 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHH-----------HHHHHHHHH
Confidence 4678888888888876653222222233 67777777776665 2222222 223445555
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHH
Q 003768 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV 444 (796)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l 444 (796)
..+...|.+++-+... -++-|....+-|.+.|-+.|+-..|++.+-+--.. +.-++.|..-|-..|....-.++|...
T Consensus 571 led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred hhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 5677777777754432 24557889999999999999999999988654332 455677777777888888889999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHhC
Q 003768 445 EEHMLEHGVYPEEPELEALLRVSV-EAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~LI~~~~-~~G~~~~A~~ll~~M~~~ 486 (796)
|+...- +.|+..-|..||..|. +.|++.+|++++....++
T Consensus 649 ~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 649 FEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 987543 5699999999998874 679999999999998876
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.53 E-value=0.035 Score=60.44 Aligned_cols=281 Identities=11% Similarity=0.006 Sum_probs=176.1
Q ss_pred cCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccC
Q 003768 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (796)
Q Consensus 163 ~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~ 242 (796)
.|+...|+++..+-.+.+ ..|- ..|-.-..+.-+.||.+.|-.++.+..+.--.++...+-+.-....
T Consensus 97 eG~~~qAEkl~~rnae~~------e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll----- 164 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG------EQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL----- 164 (400)
T ss_pred cCcHHHHHHHHHHhhhcC------cchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-----
Confidence 478889999988863332 3344 7788888889999999999999999987644556666666666666
Q ss_pred CcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCccee
Q 003768 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (796)
Q Consensus 243 ~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty 322 (796)
..|+.+.|..-.+-+ .+|... +...-.....+ |.+.|++.....++..|.+.|+--|.-.-
T Consensus 165 -----~~~d~~aA~~~v~~l----l~~~pr----~~~vlrLa~r~------y~~~g~~~~ll~~l~~L~ka~~l~~~e~~ 225 (400)
T COG3071 165 -----NRRDYPAARENVDQL----LEMTPR----HPEVLRLALRA------YIRLGAWQALLAILPKLRKAGLLSDEEAA 225 (400)
T ss_pred -----hCCCchhHHHHHHHH----HHhCcC----ChHHHHHHHHH------HHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence 557777777666411 123222 55667888888 99999999999999999999875554222
Q ss_pred ccchhhhHH-hhhhcC-CCCc----ccccccccccccch------hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH
Q 003768 323 LNSQLLDGR-SNLERG-PDDQ----SRKKDWSIDNQDAD------EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (796)
Q Consensus 323 ~~g~~~~A~-~l~~~m-~pd~----~ty~~~~~~~~~~~------n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty 390 (796)
- --..|+ .++++. .++. .+| |.-.++... .+++.-+.++|+.++|.++.++-.+++..|...+
T Consensus 226 ~--le~~a~~glL~q~~~~~~~~gL~~~--W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~- 300 (400)
T COG3071 226 R--LEQQAWEGLLQQARDDNGSEGLKTW--WKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR- 300 (400)
T ss_pred H--HHHHHHHHHHHHHhccccchHHHHH--HHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH-
Confidence 1 000000 011111 0000 000 000000000 3466667778888888888877777766555111
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH-HCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003768 391 TAVGRMAMSMGDGDMAFDMVKRMK-SLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (796)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~-~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~ 469 (796)
.-.+.+-++.+.-.+..+.-. ..+-.| -.+.+|=.-|.+++.+.+|.+.|+.-.+. .|+..+|+.+-+++.+
T Consensus 301 ---~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~ 373 (400)
T COG3071 301 ---LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQ 373 (400)
T ss_pred ---HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHH
Confidence 123344555555555544432 345555 33444555566788888888888865554 4888888888888888
Q ss_pred cCChhHHHHHHHHHHhC
Q 003768 470 AGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 470 ~G~~~~A~~ll~~M~~~ 486 (796)
.|+..+|.++.++-...
T Consensus 374 ~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 374 LGEPEEAEQVRREALLL 390 (400)
T ss_pred cCChHHHHHHHHHHHHH
Confidence 88888888877765543
No 55
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.43 E-value=0.1 Score=60.68 Aligned_cols=277 Identities=13% Similarity=0.095 Sum_probs=173.9
Q ss_pred hhHhhhcCCcchHHHHHHHHHhcCCCCCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003768 157 NQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235 (796)
Q Consensus 157 ~~~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd-~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a 235 (796)
++-+.+.++.++|++.+++-.. ..+| +..+-..-..+.+.|+.++|..+|..+.+.+ |+-..|-..|..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~--------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~ 80 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK--------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEE 80 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh--------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHH
Confidence 3456688999999999977522 1223 2455566678899999999999999999875 666666655555
Q ss_pred HHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC--CcchhhhcccCccccccccccCCh-HHHHHHHHHHHH
Q 003768 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRF-DDLDSTFNEKEN 312 (796)
Q Consensus 236 ~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~~-~~A~~lf~eM~~ 312 (796)
|..... .-.....+....+++ ++... .+ +.+-.-.|. +.....+ ..+...+..+..
T Consensus 81 ~~g~~~----~~~~~~~~~~~~~y~-------~l~~~--yp~s~~~~rl~L~--------~~~g~~F~~~~~~yl~~~l~ 139 (517)
T PF12569_consen 81 ALGLQL----QLSDEDVEKLLELYD-------ELAEK--YPRSDAPRRLPLD--------FLEGDEFKERLDEYLRPQLR 139 (517)
T ss_pred HHhhhc----ccccccHHHHHHHHH-------HHHHh--CccccchhHhhcc--------cCCHHHHHHHHHHHHHHHHh
Confidence 541110 001224556666664 33332 12 111111111 2222223 344566677788
Q ss_pred cCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHh----CC------
Q 003768 313 LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL----DE------ 382 (796)
Q Consensus 313 ~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~----~g------ 382 (796)
+|+++ .+ +.|-.-|......+-..+++..+.. .+
T Consensus 140 KgvPs-lF-----------------------------------~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~ 183 (517)
T PF12569_consen 140 KGVPS-LF-----------------------------------SNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGD 183 (517)
T ss_pred cCCch-HH-----------------------------------HHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCcc
Confidence 88643 21 3344444444444444555554432 11
Q ss_pred ----CCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 003768 383 ----VPMNEA--SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455 (796)
Q Consensus 383 ----i~pd~~--ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p 455 (796)
-.|... ++.-|...|-..|+.++|++.+++..+. .|. +.-|..--..|-+.|++.+|.+.+++...... -
T Consensus 184 ~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~ 260 (517)
T PF12569_consen 184 DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-A 260 (517)
T ss_pred ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-h
Confidence 124443 4456677788999999999999987766 466 45666666778899999999999999877541 3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHh
Q 003768 456 EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFN 503 (796)
Q Consensus 456 d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~I~~~~~ 503 (796)
|-..-+-....+.++|++++|.+++....+...++..+...+=..||.
T Consensus 261 DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 261 DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE 308 (517)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence 555666778888999999999999999988744344445555555554
No 56
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.39 E-value=0.0012 Score=59.56 Aligned_cols=79 Identities=14% Similarity=0.219 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCcccHHHHHHHHHHcC--------ChHHHHHHHHHHHhCCCCCCHHHHH
Q 003768 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNG--------DVDKACSVEEHMLEHGVYPEEPELE 461 (796)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~gi-~Pd~~ty~~LI~~~~~~G--------~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (796)
...|.-|...+++.....+|..++..|+ .|.+.+|+.+|.+.++.. .+-.++.++++|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445555555666666666666666666 666666666666666542 2344567777777777788888887
Q ss_pred HHHHHHHh
Q 003768 462 ALLRVSVE 469 (796)
Q Consensus 462 ~LI~~~~~ 469 (796)
.+|..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77777654
No 57
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.32 E-value=0.0072 Score=69.47 Aligned_cols=240 Identities=14% Similarity=0.070 Sum_probs=158.6
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHH----HH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSK-KDRSEQFQ-LRVELDMCSKRGDVMGAIRLYDKAQR---EGIKLGQY----HY 229 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~-g~~Pd~~t-yn~lI~a~~k~G~~~~A~~lf~~M~~---~Gi~pd~~----ty 229 (796)
.....++.+.|..+|+.-.+.- .+.. -..|.+.+ .+.+=..|...+++++|..+|.++.. ...-++.. ++
T Consensus 208 ~y~~~g~~e~A~~l~k~Al~~l-~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 208 MYAVQGRLEKAEPLCKQALRIL-EKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHHH-HHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 5667789999999999865431 1111 23444432 23345678889999999999999983 23334433 34
Q ss_pred HHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhh--hcc-CCCC--Ccch-hhhcccCccccccccccCChHHH
Q 003768 230 NVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL--GDS-RDMD--NNGQ-LDYGSSPMIDKLESNSSYRFDDL 303 (796)
Q Consensus 230 n~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em--~~~-~gv~--d~~t-yn~LI~~~~~~~~~~~~g~~~~A 303 (796)
+.|=.+|+ +.|++++|...++ +-| ..+ .+.. .+.+ ++.+... ++..+++++|
T Consensus 287 ~nLa~ly~----------~~GKf~EA~~~~e------~Al~I~~~~~~~~~~~v~~~l~~~~~~------~~~~~~~Eea 344 (508)
T KOG1840|consen 287 NNLAVLYY----------KQGKFAEAEEYCE------RALEIYEKLLGASHPEVAAQLSELAAI------LQSMNEYEEA 344 (508)
T ss_pred HHHHHHHh----------ccCChHHHHHHHH------HHHHHHHHhhccChHHHHHHHHHHHHH------HHHhcchhHH
Confidence 44444566 8899888888775 222 111 1222 3333 5666666 8899999999
Q ss_pred HHHHHHHHHcCCCCCcceeccchhhhHHhhhh-cCCCCc-ccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhC
Q 003768 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLE-RGPDDQ-SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD 381 (796)
Q Consensus 304 ~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~-~m~pd~-~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~ 381 (796)
..++..-.+. +. .+.++. .+ ...++-|=..|-+.|++++|.++|++....
T Consensus 345 ~~l~q~al~i--------------------~~~~~g~~~~~~--------a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 345 KKLLQKALKI--------------------YLDAPGEDNVNL--------AKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred HHHHHHHHHH--------------------HHhhccccchHH--------HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 9988754332 11 111111 00 011277888899999999999999977642
Q ss_pred -----C-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH----HCCC-CCC-cccHHHHHHHHHHcCChHHHHHHHHHH
Q 003768 382 -----E-VPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMK----SLGI-NPR-LRSYGPALSVFCNNGDVDKACSVEEHM 448 (796)
Q Consensus 382 -----g-i~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~----~~gi-~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M 448 (796)
| ..+. -..++-|-..|.+.+..++|.++|.+-. ..|. .|+ ..+|..|...|.+.|+.++|.++.+..
T Consensus 397 ~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 397 LRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1 1222 4577889999999999999999998754 2332 123 468888999999999999999998876
Q ss_pred H
Q 003768 449 L 449 (796)
Q Consensus 449 ~ 449 (796)
.
T Consensus 477 ~ 477 (508)
T KOG1840|consen 477 L 477 (508)
T ss_pred H
Confidence 5
No 58
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.22 E-value=0.0018 Score=72.70 Aligned_cols=115 Identities=16% Similarity=0.187 Sum_probs=92.3
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~--gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~ 433 (796)
.++++.+....+++++..++...+.. ....-..|..++|+.|.+.|..+.|..+++.=...|+-||..|||.||+.+.
T Consensus 70 d~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl 149 (429)
T PF10037_consen 70 DIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFL 149 (429)
T ss_pred HHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHh
Confidence 66777777777888888888887764 2223334556899999999999999999988888899999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003768 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~ 470 (796)
+.|++..|.+|..+|...+...+..|+.--+.+|.+.
T Consensus 150 ~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 150 KKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999988888888777888887777777665
No 59
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.21 E-value=0.0018 Score=58.43 Aligned_cols=80 Identities=8% Similarity=0.023 Sum_probs=68.4
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCcccHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMG--------DGDMAFDMVKRMKSLGINPRLRSYG 426 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~~ty~~LI~~~~~~g--------~~~~A~~l~~~M~~~gi~Pd~~ty~ 426 (796)
...|..+...+++.....+|+.++..|+ .|++.+|+.++++.++.. ++-+++.++..|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3345666667999999999999999999 899999999999998743 2346788999999999999999999
Q ss_pred HHHHHHHHc
Q 003768 427 PALSVFCNN 435 (796)
Q Consensus 427 ~LI~~~~~~ 435 (796)
.+|..+.+.
T Consensus 109 ivl~~Llkg 117 (120)
T PF08579_consen 109 IVLGSLLKG 117 (120)
T ss_pred HHHHHHHHh
Confidence 999988753
No 60
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.13 E-value=0.0053 Score=68.98 Aligned_cols=131 Identities=13% Similarity=0.146 Sum_probs=108.7
Q ss_pred HHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCcccHHHHHHHHHHcCChHHHHHHHHHH
Q 003768 374 IYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (796)
Q Consensus 374 lf~~M~~---~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~--gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M 448 (796)
++..|.+ .+.+.+.+.+..+++.+....+++++..++...... ...-...|..++|..|.+.|..++|.+++..=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 5555543 455678889999999999999999999999888765 33333456679999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH-HHHHHhc
Q 003768 449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNS 504 (796)
Q Consensus 449 ~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~-I~~~~~~ 504 (796)
...|+-||..+||.||+.+.+.|++..|.++..+|......-.|.|+.. +..+++.
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988766666777766 5555444
No 61
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.07 E-value=0.0037 Score=63.10 Aligned_cols=90 Identities=20% Similarity=0.333 Sum_probs=77.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC----------------ChHHHH
Q 003768 384 PMNEASLTAVGRMAMS-----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG----------------DVDKAC 442 (796)
Q Consensus 384 ~pd~~ty~~LI~~~~~-----~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G----------------~~~~A~ 442 (796)
..|..+|..+|+.|.+ .|..+-....++.|.+.|+.-|+.+|+.||+.+=+.. +-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4578899999999885 4788888899999999999999999999999876632 345689
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003768 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (796)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~ 473 (796)
+|+++|+..|+.||..|+..|++.+.+.+..
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 9999999999999999999999999887764
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.00 E-value=0.19 Score=53.64 Aligned_cols=255 Identities=12% Similarity=0.080 Sum_probs=157.8
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRV-------ELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNV 231 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~-------lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~ 231 (796)
.+...|..+.|.++-..+.+ +|| .|++- |=.-|-+.|-+|.|..+|..+.+.|.- -....--
T Consensus 78 LfRsRGEvDRAIRiHQ~L~~---------spd-lT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~Alqq 146 (389)
T COG2956 78 LFRSRGEVDRAIRIHQTLLE---------SPD-LTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQ 146 (389)
T ss_pred HHHhcchHHHHHHHHHHHhc---------CCC-CchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHH
Confidence 45678899999999998842 344 34433 445577789999999999999976522 1234555
Q ss_pred HHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCcccc----ccccccCChHHHHHHH
Q 003768 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDK----LESNSSYRFDDLDSTF 307 (796)
Q Consensus 232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~----~~~~~~g~~~~A~~lf 307 (796)
|+..|- ....+++|+++-. ++... +--+|+.-|.- ++ ..+....+++.|..++
T Consensus 147 Ll~IYQ----------~treW~KAId~A~-------~L~k~----~~q~~~~eIAq--fyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 147 LLNIYQ----------ATREWEKAIDVAE-------RLVKL----GGQTYRVEIAQ--FYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHH----------HhhHHHHHHHHHH-------HHHHc----CCccchhHHHH--HHHHHHHHHhhhhhHHHHHHHH
Confidence 677776 6677788877763 33332 11223333322 00 0033445566666666
Q ss_pred HHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHH-HHHHhccCHHHHHHHHHHHHhCCCCCC
Q 003768 308 NEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL-SEDAKKYAFQRGFEIYEKMCLDEVPMN 386 (796)
Q Consensus 308 ~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI-~~~~k~g~~~~A~~lf~~M~~~gi~pd 386 (796)
.+-.... |+.+-- ++++ +-+...|+++.|.+.++...+.+..--
T Consensus 204 ~kAlqa~--~~cvRA---------------------------------si~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 204 KKALQAD--KKCVRA---------------------------------SIILGRVELAKGDYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred HHHHhhC--ccceeh---------------------------------hhhhhHHHHhccchHHHHHHHHHHHHhChHHH
Confidence 5544431 222221 3333 345668899999999999988875555
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~ 466 (796)
..+...|..+|.+.|+.++....+..+.+....++. -..+-.--....-.+.|...+.+-..+ .|+..-+..||+.
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~ 324 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHh
Confidence 567888999999999999999999888766333332 222222112223345555555444443 4999999999988
Q ss_pred HHh---cCChhHHHHHHHHHHhC
Q 003768 467 SVE---AGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 467 ~~~---~G~~~~A~~ll~~M~~~ 486 (796)
-.. .|...+-..+++.|...
T Consensus 325 ~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 325 HLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred hhccccccchhhhHHHHHHHHHH
Confidence 643 33455566666777655
No 63
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.85 E-value=0.24 Score=59.12 Aligned_cols=288 Identities=13% Similarity=0.061 Sum_probs=158.6
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~ 239 (796)
..+.+....|.-.|.+-++.... +.-.+=-=+..|-+.|+...|..-|.+|....-+.|..-+-.+|...+..
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~-------n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPS-------NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCc-------chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 33444555566666655432211 11222223456677788888888888877553222333333444433311
Q ss_pred ccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCc
Q 003768 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (796)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~ 319 (796)
+-..+..+.|.+.+. .-.....+....-.+|+++.. |.+...++.|.....++..+...+|.
T Consensus 290 ------~~~~~~~e~a~~~le------~~~s~~~~~~~~ed~ni~ael------~l~~~q~d~~~~~i~~~~~r~~e~d~ 351 (895)
T KOG2076|consen 290 ------FITHNERERAAKALE------GALSKEKDEASLEDLNILAEL------FLKNKQSDKALMKIVDDRNRESEKDD 351 (895)
T ss_pred ------HHHhhHHHHHHHHHH------HHHhhccccccccHHHHHHHH------HHHhHHHHHhhHHHHHHhccccCCCh
Confidence 113445577777774 112211111134447888888 99999999999999988884444443
Q ss_pred cee----------------------c--------------cchhhhHHhhhhcC-----CCCcccccccccccccchhhH
Q 003768 320 HMK----------------------L--------------NSQLLDGRSNLERG-----PDDQSRKKDWSIDNQDADEIR 358 (796)
Q Consensus 320 ~ty----------------------~--------------~g~~~~A~~l~~~m-----~pd~~ty~~~~~~~~~~~n~l 358 (796)
.-+ . .+...+++.-|..- ..++--| --+
T Consensus 352 ~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~-----------~d~ 420 (895)
T KOG2076|consen 352 SEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLY-----------LDL 420 (895)
T ss_pred hhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHH-----------HHH
Confidence 222 1 11111111111110 0111112 445
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHHcCC
Q 003768 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGD 437 (796)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~-~ty~~LI~~~~~~G~ 437 (796)
.++|...|.+.+|+.+|..+...-.--+...|--+.++|-..|..++|.+.++..... .|+. -.--+|-.-+-+.|+
T Consensus 421 a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~ 498 (895)
T KOG2076|consen 421 ADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGN 498 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCC
Confidence 6677777778888888877777655556677777777777778888888777776544 2331 222233444556777
Q ss_pred hHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 438 VDKACSVEEHML--------EHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 438 ~~~A~~l~~~M~--------~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
.++|.+.+..|. ..+..|+....--..+.+...|+.++-..+-..|..
T Consensus 499 ~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 499 HEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 778877777753 223445555555555666667776654444444433
No 64
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.43 Score=53.17 Aligned_cols=250 Identities=11% Similarity=0.055 Sum_probs=173.7
Q ss_pred CcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcC-CC-CCHHHHHHHHHHHHcccc
Q 003768 165 NDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDM-CSKRGDVMGAIRLYDKAQREG-IK-LGQYHYNVLLYLCSSAAV 241 (796)
Q Consensus 165 ~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a-~~k~G~~~~A~~lf~~M~~~G-i~-pd~~tyn~LL~a~~~~~~ 241 (796)
..++++.=.+.....|.... --+-+.+.+ .-...|+++|+.+|++..+.. .+ -|..+|+-+|..--.
T Consensus 242 q~~e~~~k~e~l~~~gf~~~-------~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~--- 311 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNS-------MYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND--- 311 (559)
T ss_pred HHHHHHHHHHHHHhccCCcc-------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh---
Confidence 44555555555544443221 222333332 334578999999999998763 11 367888888877652
Q ss_pred CCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcce
Q 003768 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (796)
Q Consensus 242 ~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~t 321 (796)
++.-.--|..++.+ +.. -..|+.++-+- |.-.++-++|...|+.-.+.+ |..
T Consensus 312 ------~skLs~LA~~v~~i-----dKy-------R~ETCCiIaNY------YSlr~eHEKAv~YFkRALkLN--p~~-- 363 (559)
T KOG1155|consen 312 ------KSKLSYLAQNVSNI-----DKY-------RPETCCIIANY------YSLRSEHEKAVMYFKRALKLN--PKY-- 363 (559)
T ss_pred ------hHHHHHHHHHHHHh-----ccC-------CccceeeehhH------HHHHHhHHHHHHHHHHHHhcC--cch--
Confidence 12222244445420 000 22344444455 666677788888887766653 111
Q ss_pred eccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003768 322 KLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401 (796)
Q Consensus 322 y~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g 401 (796)
...| +.|=+.|........|.+-++...+-. +.|-..|=.|=.+|.-.+
T Consensus 364 -------------------~~aW-----------TLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 364 -------------------LSAW-----------TLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred -------------------hHHH-----------HHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhc
Confidence 1223 777788999999999999999887754 568889999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 003768 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (796)
Q Consensus 402 ~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~ 481 (796)
...-|+-.|++-... .+-|.+.|.+|=.+|.+.+++++|...|......|= .+...|..|-+.|-+.++.++|...|.
T Consensus 413 Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~ye 490 (559)
T KOG1155|consen 413 MHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYE 490 (559)
T ss_pred chHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999886654 234689999999999999999999999999887652 356888999999999999999999888
Q ss_pred HHHh
Q 003768 482 KLRT 485 (796)
Q Consensus 482 ~M~~ 485 (796)
+-.+
T Consensus 491 k~v~ 494 (559)
T KOG1155|consen 491 KYVE 494 (559)
T ss_pred HHHH
Confidence 7655
No 65
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.71 E-value=0.13 Score=59.55 Aligned_cols=240 Identities=13% Similarity=0.043 Sum_probs=158.0
Q ss_pred hcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccc
Q 003768 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDV-MGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (796)
Q Consensus 162 k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~-~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~ 240 (796)
+....++|.++|+....... -..-+...|.++|--+-+.=.+ --|..+.+.++ -.+.||-++=++|+
T Consensus 365 El~~Y~~a~~~F~~~r~~~p----~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~-----~sPesWca~GNcfS--- 432 (638)
T KOG1126|consen 365 ELIEYDQAERIFSLVRRIEP----YRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDP-----NSPESWCALGNCFS--- 432 (638)
T ss_pred HHHHHHHHHHHHHHHHhhcc----ccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCC-----CCcHHHHHhcchhh---
Confidence 44567789999999843221 1223457888887554332111 12333333333 34588888888888
Q ss_pred cCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcc
Q 003768 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (796)
Q Consensus 241 ~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ 320 (796)
-.++.+.|+..|. +.. -+.+.++|..-+-| .++.....+|.|..-|+.- +..|.-
T Consensus 433 -------LQkdh~~Aik~f~------RAi----Qldp~faYayTLlG----hE~~~~ee~d~a~~~fr~A----l~~~~r 487 (638)
T KOG1126|consen 433 -------LQKDHDTAIKCFK------RAI----QLDPRFAYAYTLLG----HESIATEEFDKAMKSFRKA----LGVDPR 487 (638)
T ss_pred -------hhhHHHHHHHHHH------Hhh----ccCCccchhhhhcC----ChhhhhHHHHhHHHHHHhh----hcCCch
Confidence 6678888888885 111 12233444333333 3478888888888888644 445666
Q ss_pred eec-----------cchhhhHHhhhhcC---CC-CcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCC
Q 003768 321 MKL-----------NSQLLDGRSNLERG---PD-DQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM 385 (796)
Q Consensus 321 ty~-----------~g~~~~A~~l~~~m---~p-d~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~p 385 (796)
.|+ .++.+.|+-.|..- .| +.+.- ..+-..+-+.|+.++|+++|++..... +-
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~-----------~~~g~~~~~~k~~d~AL~~~~~A~~ld-~k 555 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVIL-----------CHIGRIQHQLKRKDKALQLYEKAIHLD-PK 555 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHH-----------hhhhHHHHHhhhhhHHHHHHHHHHhcC-CC
Confidence 777 77888888877775 33 33333 445566777899999999999887654 22
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~-~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
|...---.+..+...++.++|+..++++++. .|+. ..|..+-..|-+.|+.+.|..-|.-|.+..
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 4444444566777889999999999999875 5664 455556678888999999999888777643
No 66
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.70 E-value=0.028 Score=60.65 Aligned_cols=126 Identities=15% Similarity=0.100 Sum_probs=95.3
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~----~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~ 431 (796)
...|..|.+.++++.|.+.|+.|.+.. .| .+.+-|..++.. ...+.+|+-+|++|... ..++..+.|.+..+
T Consensus 135 al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~ 210 (290)
T PF04733_consen 135 ALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVC 210 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHH
Confidence 567899999999999999999999763 34 445555555553 34699999999998654 66788888999999
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhC
Q 003768 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTS 486 (796)
Q Consensus 432 ~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~-~~A~~ll~~M~~~ 486 (796)
+...|++++|.+++.+..+.. .-|..+...+|-.....|+. +.+.+++.+++..
T Consensus 211 ~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999999876544 23556777788887888887 6788899998876
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.66 E-value=0.32 Score=56.62 Aligned_cols=244 Identities=14% Similarity=0.067 Sum_probs=157.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCc
Q 003768 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY-LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN 278 (796)
Q Consensus 200 a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~-a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~ 278 (796)
.+...|++++|++++..-. +.-+|...+--... .+. +.|+.++|..++ +++.+. +-.|.
T Consensus 13 il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~----------kLg~~~eA~~~y-------~~Li~r-NPdn~ 72 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLL----------KLGRKEEAEKIY-------RELIDR-NPDNY 72 (517)
T ss_pred HHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHH----------HcCCHHHHHHHH-------HHHHHH-CCCcH
Confidence 4578899999999997643 34556665554444 444 889999999999 466654 33344
Q ss_pred chhhhcccCccccccccc-----cCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCccccccccccccc
Q 003768 279 GQLDYGSSPMIDKLESNS-----SYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQD 353 (796)
Q Consensus 279 ~tyn~LI~~~~~~~~~~~-----~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~ 353 (796)
.-|..+..+ .+- ....+....+++++...- |-....
T Consensus 73 ~Yy~~L~~~------~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~------------------------------- 113 (517)
T PF12569_consen 73 DYYRGLEEA------LGLQLQLSDEDVEKLLELYDELAEKY--PRSDAP------------------------------- 113 (517)
T ss_pred HHHHHHHHH------HhhhcccccccHHHHHHHHHHHHHhC--ccccch-------------------------------
Confidence 447777666 422 225667778888776653 222111
Q ss_pred chhhHHHHHHhccCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----C----------C
Q 003768 354 ADEIRLSEDAKKYAF-QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----G----------I 418 (796)
Q Consensus 354 ~~n~lI~~~~k~g~~-~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g----------i 418 (796)
--+.-.+.....+ ..+...+..+..+||+ .+|+.|-..|......+-..+++..+... + -
T Consensus 114 --~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~ 188 (517)
T PF12569_consen 114 --RRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKE 188 (517)
T ss_pred --hHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccC
Confidence 0010011111122 3455666777888864 46777777777666666666777666533 1 1
Q ss_pred CCCcc--cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH
Q 003768 419 NPRLR--SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495 (796)
Q Consensus 419 ~Pd~~--ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd-~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~ 495 (796)
.|... +|.-+-..|-..|+.++|++..++-+++- |+ +..|..--+.|-+.|++++|.+.++.-+.. .....-.
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--D~~DRyi 264 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEAREL--DLADRYI 264 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--ChhhHHH
Confidence 23332 44555667788999999999999988864 76 556777888899999999999999999887 3333333
Q ss_pred HH--HHHHHhchHHHHhc
Q 003768 496 DV--IAKWFNSKEAARLG 511 (796)
Q Consensus 496 ~~--I~~~~~~~~~~~a~ 511 (796)
+. ++-+++.+...+|.
T Consensus 265 NsK~aKy~LRa~~~e~A~ 282 (517)
T PF12569_consen 265 NSKCAKYLLRAGRIEEAE 282 (517)
T ss_pred HHHHHHHHHHCCCHHHHH
Confidence 33 77777777665554
No 68
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.63 E-value=0.038 Score=61.90 Aligned_cols=123 Identities=12% Similarity=0.097 Sum_probs=96.8
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G 436 (796)
+|+..+...++++.|.++|+++.+.. |++. ..|++.+...++-.+|.+++++..+. .+-+......-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 34445555789999999999999886 6644 45888888899999999999988754 1123333333445677899
Q ss_pred ChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 437 DVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~-ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+.+.|.++.+.+.+.. |+.. +|..|..+|.+.|+++.|+..++.|.-.
T Consensus 249 ~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 249 KYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 9999999999998854 7665 9999999999999999999999987644
No 69
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.62 E-value=0.02 Score=61.68 Aligned_cols=201 Identities=11% Similarity=0.058 Sum_probs=123.9
Q ss_pred CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCc
Q 003768 188 RSEQFQLRVELDMCSKR-GDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNS 266 (796)
Q Consensus 188 ~Pd~~tyn~lI~a~~k~-G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s 266 (796)
.|.......+ ..|.+. .+-+.++.-+.+.......++-.++ .++.|.. +...|++++|++++.
T Consensus 63 ~~~l~av~~l-a~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~-~~~~A~i--------~~~~~~~~~AL~~l~------ 126 (290)
T PF04733_consen 63 SPELQAVRLL-AEYLSSPSDKESALEELKELLADQAGESNEIV-QLLAATI--------LFHEGDYEEALKLLH------ 126 (290)
T ss_dssp SCCCHHHHHH-HHHHCTSTTHHCHHHHHHHCCCTS---CHHHH-HHHHHHH--------HCCCCHHHHHHCCCT------
T ss_pred ChhHHHHHHH-HHHHhCccchHHHHHHHHHHHHhccccccHHH-HHHHHHH--------HHHcCCHHHHHHHHH------
Confidence 5564555444 444444 4444555544444333333222222 3444443 127899999998884
Q ss_pred hhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccc
Q 003768 267 TELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKD 346 (796)
Q Consensus 267 ~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~ 346 (796)
+..+.-..-..|.. +.+.+++|.|.+.++.|.+.. .|.+-. ++
T Consensus 127 -------~~~~lE~~al~Vqi------~L~~~R~dlA~k~l~~~~~~~--eD~~l~---qL------------------- 169 (290)
T PF04733_consen 127 -------KGGSLELLALAVQI------LLKMNRPDLAEKELKNMQQID--EDSILT---QL------------------- 169 (290)
T ss_dssp -------TTTCHHHHHHHHHH------HHHTT-HHHHHHHHHHHHCCS--CCHHHH---HH-------------------
T ss_pred -------ccCcccHHHHHHHH------HHHcCCHHHHHHHHHHHHhcC--CcHHHH---HH-------------------
Confidence 11233334456667 899999999999999998653 232222 01
Q ss_pred cccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHH
Q 003768 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (796)
Q Consensus 347 ~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~ 426 (796)
..++|+.+.-...+++|+.+|++|.+. ..++..+.|.+..++...|++++|.+++.+.....- -|..+..
T Consensus 170 --------a~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~La 239 (290)
T PF04733_consen 170 --------AEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLA 239 (290)
T ss_dssp --------HHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHH
T ss_pred --------HHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHH
Confidence 134444443345799999999998775 568899999999999999999999999998654321 2334555
Q ss_pred HHHHHHHHcCCh-HHHHHHHHHHHhC
Q 003768 427 PALSVFCNNGDV-DKACSVEEHMLEH 451 (796)
Q Consensus 427 ~LI~~~~~~G~~-~~A~~l~~~M~~~ 451 (796)
.+|......|+- +.+.+.+.++...
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 567777777877 6788888888864
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.60 E-value=0.3 Score=52.88 Aligned_cols=217 Identities=11% Similarity=-0.049 Sum_probs=137.8
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCCH--HHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcch
Q 003768 204 RGDVMGAIRLYDKAQRE-GIKLGQ--YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ 280 (796)
Q Consensus 204 ~G~~~~A~~lf~~M~~~-Gi~pd~--~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~t 280 (796)
.+..+.++.-+.++... .+.|+. ..|..+=..+. ..|+.++|...|. +.... .-.+...
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a 100 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYD----------SLGLRALARNDFS-------QALAL-RPDMADA 100 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHc-CCCCHHH
Confidence 34566778888887743 233332 23333333444 6788999988884 33221 1125566
Q ss_pred hhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCc-ceeccchhhhHHhhhhcCCCCcccccccccccccchhhHH
Q 003768 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (796)
Q Consensus 281 yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~-~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI 359 (796)
|+.+-.. +...|++++|...|+...+. .|+. .+| .-+-
T Consensus 101 ~~~lg~~------~~~~g~~~~A~~~~~~Al~l--~P~~~~a~---------------------------------~~lg 139 (296)
T PRK11189 101 YNYLGIY------LTQAGNFDAAYEAFDSVLEL--DPTYNYAY---------------------------------LNRG 139 (296)
T ss_pred HHHHHHH------HHHCCCHHHHHHHHHHHHHh--CCCCHHHH---------------------------------HHHH
Confidence 8887777 89999999999999888764 3442 122 4455
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChH
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~ 439 (796)
..+...|++++|.+.|+...+.. |+..........+...++.++|...|++.... ..|+...+ .+ .....|+..
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~--~~~~lg~~~ 213 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NI--VEFYLGKIS 213 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HH--HHHHccCCC
Confidence 66778899999999999988753 44332223333345678899999999775533 23433222 22 223356665
Q ss_pred HHHHHHHHHHhC---CC--CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 440 KACSVEEHMLEH---GV--YP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 440 ~A~~l~~~M~~~---gv--~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+ +.+..+.+. .+ .| ....|..|-..+.+.|+.++|...|++....
T Consensus 214 ~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 214 EE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 54 355555432 11 11 2357888888999999999999999998876
No 71
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.38 Score=57.95 Aligned_cols=303 Identities=13% Similarity=0.065 Sum_probs=192.3
Q ss_pred HhhhcCCcchHHHHHHH----HHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHH----
Q 003768 159 KMEQRTNDSGQYKVRGI----TDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQY---- 227 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~----M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~---Gi~pd~~---- 227 (796)
.+-..++...++.++.. |...+. . +.....|.+=...-..|++..|...|...... -..+|..
T Consensus 422 ql~e~~d~~~sL~~~~~A~d~L~~~~~-----~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~ 495 (1018)
T KOG2002|consen 422 QLLEQTDPWASLDAYGNALDILESKGK-----Q-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTN 495 (1018)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHcCC-----C-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccch
Confidence 44555566555666554 322332 2 33378888888999999999999999998854 2334442
Q ss_pred -HHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCcccccccccc-------CC
Q 003768 228 -HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSS-------YR 299 (796)
Q Consensus 228 -tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~-------g~ 299 (796)
|---.|..|.. ..++.+.|.+++. +.... |-.-|++ |.+. +.
T Consensus 496 lt~~YNlarl~E---------~l~~~~~A~e~Yk-------~Ilke--------hp~YId~------ylRl~~ma~~k~~ 545 (1018)
T KOG2002|consen 496 LTLKYNLARLLE---------ELHDTEVAEEMYK-------SILKE--------HPGYIDA------YLRLGCMARDKNN 545 (1018)
T ss_pred hHHHHHHHHHHH---------hhhhhhHHHHHHH-------HHHHH--------CchhHHH------HHHhhHHHHhccC
Confidence 12222333332 3456777878774 22211 2333444 4444 44
Q ss_pred hHHHHHHHHHHHH-cCCCCCcceec------cchhhhHHhhhhcC--CCCcc--cccccccccccchhhHHHHHHh----
Q 003768 300 FDDLDSTFNEKEN-LGQFSNGHMKL------NSQLLDGRSNLERG--PDDQS--RKKDWSIDNQDADEIRLSEDAK---- 364 (796)
Q Consensus 300 ~~~A~~lf~eM~~-~Gi~Pd~~ty~------~g~~~~A~~l~~~m--~pd~~--ty~~~~~~~~~~~n~lI~~~~k---- 364 (796)
..+|..++.+... ..--|++.++- ...+.-|..-|... .++.. +|-..++ .|..|..+.+
T Consensus 546 ~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaL-----GN~~~~~l~~~~rn 620 (1018)
T KOG2002|consen 546 LYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIAL-----GNVYIQALHNPSRN 620 (1018)
T ss_pred cHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHh-----hHHHHHHhcccccC
Confidence 5667766666544 34667777773 22233333333333 22222 2311111 1444544433
Q ss_pred ----ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHH
Q 003768 365 ----KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (796)
Q Consensus 365 ----~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~ 440 (796)
.+..++|+++|.+..... +-|...-|-+--.++..|++.+|.++|.+..+... -+.-+|--+-++|...|++..
T Consensus 621 ~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~ 698 (1018)
T KOG2002|consen 621 PEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRL 698 (1018)
T ss_pred hHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHH
Confidence 345788999998877654 45777778888889999999999999999988744 244566678899999999999
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh--HHHHHHHHHhchH
Q 003768 441 ACSVEEHMLEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKE 506 (796)
Q Consensus 441 A~~l~~~M~~~-gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~--t~~~I~~~~~~~~ 506 (796)
|.++|+...+. .-.-+......|-.++-++|.+.+|.+.+..-+.. .|+.. .+++....++...
T Consensus 699 AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~~v~FN~a~v~kkla~ 765 (1018)
T KOG2002|consen 699 AIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL--APSNTSVKFNLALVLKKLAE 765 (1018)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCccchHHhHHHHHHHHHHH
Confidence 99999876554 55567888899999999999999999988877765 55444 3555444444433
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.56 E-value=0.35 Score=53.24 Aligned_cols=230 Identities=11% Similarity=-0.034 Sum_probs=134.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC-C
Q 003768 199 DMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-N 277 (796)
Q Consensus 199 ~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~-d 277 (796)
..+...|++++|.+++++..... +-|...++. ...+...+ ...|..+.+...+. . ... ..+ .
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~------~~~~~~~~~~~~l~-------~-~~~-~~~~~ 113 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLG------DFSGMRDHVARVLP-------L-WAP-ENPDY 113 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhc------ccccCchhHHHHHh-------c-cCc-CCCCc
Confidence 35567899999999999988652 333334432 11111100 03455566666663 1 000 111 1
Q ss_pred cchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCc-ceeccchhhhHHhhhhcCCCCcccccccccccccchh
Q 003768 278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (796)
Q Consensus 278 ~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~-~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n 356 (796)
......+-.. +...|++++|...+++..+.. |+. ..+ .
T Consensus 114 ~~~~~~~a~~------~~~~G~~~~A~~~~~~al~~~--p~~~~~~---------------------------------~ 152 (355)
T cd05804 114 WYLLGMLAFG------LEEAGQYDRAEEAARRALELN--PDDAWAV---------------------------------H 152 (355)
T ss_pred HHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhC--CCCcHHH---------------------------------H
Confidence 1222233334 778899999999999888763 332 222 5
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCcccH-H--HHH
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEV-PMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSY-G--PAL 429 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~--~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi-~Pd~~ty-~--~LI 429 (796)
.+-..|...|++++|...+++.....- .|+. ..|-.+...+...|+.++|..++++...... .+..... + .++
T Consensus 153 ~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (355)
T cd05804 153 AVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLL 232 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHH
Confidence 677788899999999999998776432 2333 3466788899999999999999999754321 1112111 1 233
Q ss_pred HHHHHcCChHHHHHH--HHHHHhCCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 430 SVFCNNGDVDKACSV--EEHMLEHGVYPEEPEL--EALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 430 ~~~~~~G~~~~A~~l--~~~M~~~gv~pd~~ty--~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.-+-..|....+.+. ...............+ .....++...|+.++|..++..++..
T Consensus 233 ~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 233 WRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 334445544444333 2221111111111222 25666678889999999999998775
No 73
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.55 E-value=0.37 Score=52.79 Aligned_cols=220 Identities=11% Similarity=0.031 Sum_probs=147.9
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHH
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ-------YHYNVL 232 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~-------~tyn~L 232 (796)
....++...|+.=.+...+.+.. +....+....+|.+.|++.....+...|.+.|+--|+ .+|+.+
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr-------~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPR-------HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcC-------ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 34455666677777777554422 2278999999999999999999999999999987665 478888
Q ss_pred HHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHH
Q 003768 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN 312 (796)
Q Consensus 233 L~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~ 312 (796)
|+-+.... ..+.-..-+. ..+++.+. +.-.-.+++.- +.+.|+-++|.++..+-.+
T Consensus 236 L~q~~~~~----------~~~gL~~~W~---~~pr~lr~-----~p~l~~~~a~~------li~l~~~~~A~~~i~~~Lk 291 (400)
T COG3071 236 LQQARDDN----------GSEGLKTWWK---NQPRKLRN-----DPELVVAYAER------LIRLGDHDEAQEIIEDALK 291 (400)
T ss_pred HHHHhccc----------cchHHHHHHH---hccHHhhc-----ChhHHHHHHHH------HHHcCChHHHHHHHHHHHH
Confidence 88777322 1111111111 00011111 11112233333 8888999999999999888
Q ss_pred cCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHH-HhCCCCCCHHHHH
Q 003768 313 LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM-CLDEVPMNEASLT 391 (796)
Q Consensus 313 ~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M-~~~gi~pd~~ty~ 391 (796)
++..|...++ -++.+-++.+.=.+..++- +..+-.| -.+.
T Consensus 292 ~~~D~~L~~~-------------------------------------~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~ 332 (400)
T COG3071 292 RQWDPRLCRL-------------------------------------IPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLS 332 (400)
T ss_pred hccChhHHHH-------------------------------------HhhcCCCCchHHHHHHHHHHHhCCCCh--hHHH
Confidence 8776665444 2333444444444444333 3344444 6788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
+|=..|.+.+.+.+|...|+.-. ...|+..+|+-+-++|.+.|+..+|.+++++-...
T Consensus 333 tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 333 TLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 88888999999999999998544 45789999999999999999999999998876543
No 74
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.43 E-value=0.015 Score=58.70 Aligned_cols=94 Identities=14% Similarity=0.051 Sum_probs=75.4
Q ss_pred hhHHHHHHh-----ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------ChHHHHHHHHHHH
Q 003768 356 EIRLSEDAK-----KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----------------DGDMAFDMVKRMK 414 (796)
Q Consensus 356 n~lI~~~~k-----~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g----------------~~~~A~~l~~~M~ 414 (796)
..+|+.|.+ .|.++-...-+..|.+-|+.-|..+|+.||+.+=+.. +.+-|.+++++|.
T Consensus 51 ~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME 130 (228)
T PF06239_consen 51 LEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQME 130 (228)
T ss_pred HHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHH
Confidence 556666665 4678888889999999999999999999999987522 3467999999999
Q ss_pred HCCCCCCcccHHHHHHHHHHcCCh-HHHHHHHHHHH
Q 003768 415 SLGINPRLRSYGPALSVFCNNGDV-DKACSVEEHML 449 (796)
Q Consensus 415 ~~gi~Pd~~ty~~LI~~~~~~G~~-~~A~~l~~~M~ 449 (796)
..|+.||..|+..||..|.+.+.. .+.+++.--|.
T Consensus 131 ~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 131 NNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 999999999999999999988753 33444444443
No 75
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.41 E-value=0.094 Score=57.62 Aligned_cols=124 Identities=12% Similarity=0.104 Sum_probs=96.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHH-H
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC-N 434 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~-~ 434 (796)
+-|-+-|-+.|+-..|++.+-+-- +-++.|..|...|..-|....-+++|...|+.. .=+.|+..-|-.+|..|. +
T Consensus 596 skl~dlydqegdksqafq~~ydsy-ryfp~nie~iewl~ayyidtqf~ekai~y~eka--aliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSY-RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKA--ALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcc-cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH--HhcCccHHHHHHHHHHHHHh
Confidence 556778889999999988765533 235668888888998999999999999999864 347899999999997655 6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003768 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~ 484 (796)
.|+..+|++++..... .+.-|...+.-|++.+...|. .++.++-+++.
T Consensus 673 sgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl-~d~key~~kle 720 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL-KDAKEYADKLE 720 (840)
T ss_pred cccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc-hhHHHHHHHHH
Confidence 7999999999999876 356688888888888877774 34444444443
No 76
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.39 E-value=1.3 Score=53.25 Aligned_cols=281 Identities=10% Similarity=0.044 Sum_probs=159.3
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCS 237 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~a~~ 237 (796)
...+ |+.++|.+++.|.+.+-. .+...|-+|=..|-..|+..+|+..+ |....+.|+ ..-|-.+=....
T Consensus 149 lfar-g~~eeA~~i~~EvIkqdp-------~~~~ay~tL~~IyEqrGd~eK~l~~~--llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQDP-------RNPIAYYTLGEIYEQRGDIEKALNFW--LLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhCc-------cchhhHHHHHHHHHHcccHHHHHHHH--HHHHhcCCCChHHHHHHHHHHH
Confidence 4444 999999999999976532 23378999999999999999987765 444444444 344444444434
Q ss_pred ccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCC
Q 003768 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (796)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~P 317 (796)
+.|.+++|.-.|. +-.... -+|. -.+. ....-|-+.|....|..-|.+|...-- |
T Consensus 219 ----------~~~~i~qA~~cy~------rAI~~~--p~n~---~~~~---ers~L~~~~G~~~~Am~~f~~l~~~~p-~ 273 (895)
T KOG2076|consen 219 ----------QLGNINQARYCYS------RAIQAN--PSNW---ELIY---ERSSLYQKTGDLKRAMETFLQLLQLDP-P 273 (895)
T ss_pred ----------hcccHHHHHHHHH------HHHhcC--Ccch---HHHH---HHHHHHHHhChHHHHHHHHHHHHhhCC-c
Confidence 6677888877774 111111 0011 1000 011226677888888888877766521 1
Q ss_pred Ccceec-------------cchhhhHHhhhhcC---CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhC
Q 003768 318 NGHMKL-------------NSQLLDGRSNLERG---PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD 381 (796)
Q Consensus 318 d~~ty~-------------~g~~~~A~~l~~~m---~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~ 381 (796)
...-.. .+..+.|...++.. ..+.++ ..+.|+++..|.+..+++.|......+...
T Consensus 274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~--------~ed~ni~ael~l~~~q~d~~~~~i~~~~~r 345 (895)
T KOG2076|consen 274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEAS--------LEDLNILAELFLKNKQSDKALMKIVDDRNR 345 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccccc--------ccHHHHHHHHHHHhHHHHHhhHHHHHHhcc
Confidence 111111 33335555555554 122222 244488888888888888888877777661
Q ss_pred CCC---------------------------CC------------------------------------HHHHHHHHHHHH
Q 003768 382 EVP---------------------------MN------------------------------------EASLTAVGRMAM 398 (796)
Q Consensus 382 gi~---------------------------pd------------------------------------~~ty~~LI~~~~ 398 (796)
... ++ +-.|.-+.++|.
T Consensus 346 ~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~ 425 (895)
T KOG2076|consen 346 ESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALT 425 (895)
T ss_pred ccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Confidence 111 11 122344455566
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHH
Q 003768 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVY 477 (796)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~-~ty~~LI~~~~~~G~~~~A~ 477 (796)
..|++.+|..+|..+...-..-+...|-.+-.+|-..|..+.|.+.|+..+... |+- ..-.+|-..+-+.|+.++|.
T Consensus 426 ~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~Ekal 503 (895)
T KOG2076|consen 426 NIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKAL 503 (895)
T ss_pred hcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHH
Confidence 666666666666666554333344555555566666666666666666655421 321 22223334445566666666
Q ss_pred HHHHHHH
Q 003768 478 YLLHKLR 484 (796)
Q Consensus 478 ~ll~~M~ 484 (796)
+.+..|.
T Consensus 504 EtL~~~~ 510 (895)
T KOG2076|consen 504 ETLEQII 510 (895)
T ss_pred HHHhccc
Confidence 6666654
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.29 E-value=0.77 Score=47.01 Aligned_cols=195 Identities=14% Similarity=-0.004 Sum_probs=106.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCC
Q 003768 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM 275 (796)
Q Consensus 196 ~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv 275 (796)
-|=-+|-+.|+...|..-+++..+.. +-+..+|.++-..|- +.|..+.|.+.|. .-+....+-
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq----------~~Ge~~~A~e~Yr------kAlsl~p~~ 102 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQ----------KLGENDLADESYR------KALSLAPNN 102 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCChhhHHHHHH------HHHhcCCCc
Confidence 34458999999999999999999764 223456777777777 7788888888884 222221111
Q ss_pred CCcch-hhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccc
Q 003768 276 DNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDA 354 (796)
Q Consensus 276 ~d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~ 354 (796)
.|+.- |.+. +|..|++++|...|++-... |+-.+- ..+|
T Consensus 103 GdVLNNYG~F---------LC~qg~~~eA~q~F~~Al~~---P~Y~~~------------------s~t~---------- 142 (250)
T COG3063 103 GDVLNNYGAF---------LCAQGRPEEAMQQFERALAD---PAYGEP------------------SDTL---------- 142 (250)
T ss_pred cchhhhhhHH---------HHhCCChHHHHHHHHHHHhC---CCCCCc------------------chhh----------
Confidence 12221 3333 66666777777666665544 111111 0001
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH
Q 003768 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (796)
Q Consensus 355 ~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~ 434 (796)
.-+.-+..+.|+.+.|.+.|+.-.+.. +-...+.-.+.+...+.|+.-.|...++.....+. +...+.-..|..--+
T Consensus 143 -eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~ 219 (250)
T COG3063 143 -ENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKR 219 (250)
T ss_pred -hhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHH
Confidence 112222334566666666666555432 11223444555555566666666666655544433 555555555555555
Q ss_pred cCChHHHHHHHHHHHh
Q 003768 435 NGDVDKACSVEEHMLE 450 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~ 450 (796)
.|+.+.|.+.=..+..
T Consensus 220 ~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 220 LGDRAAAQRYQAQLQR 235 (250)
T ss_pred hccHHHHHHHHHHHHH
Confidence 5665555554444443
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.21 E-value=0.29 Score=52.18 Aligned_cols=245 Identities=11% Similarity=-0.001 Sum_probs=164.7
Q ss_pred cCCCCCCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHH
Q 003768 179 KGSKKSKKDRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLD 257 (796)
Q Consensus 179 ~g~~~~~g~~Pd~~ty-n~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~ 257 (796)
.+.....+..-| .=| +-|=.+|-+.|.+.+|.+.|..-... .|-+.||-.|-++|. +..+.+.|+.
T Consensus 211 a~~s~~~~~~~d-wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~----------ridQP~~AL~ 277 (478)
T KOG1129|consen 211 AKPSGSTGCTLD-WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQ----------RIDQPERALL 277 (478)
T ss_pred ccccccccchHh-HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHH----------HhccHHHHHH
Confidence 333334434444 334 44557889999999999999988766 355678888888898 6778889999
Q ss_pred HHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcC
Q 003768 258 TFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG 337 (796)
Q Consensus 258 vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m 337 (796)
+|. +-.+ .++-.|||-.-+.- .+-..++.++|.+++++..+.. |+
T Consensus 278 ~~~-------~gld--~fP~~VT~l~g~AR-----i~eam~~~~~a~~lYk~vlk~~--~~------------------- 322 (478)
T KOG1129|consen 278 VIG-------EGLD--SFPFDVTYLLGQAR-----IHEAMEQQEDALQLYKLVLKLH--PI------------------- 322 (478)
T ss_pred HHh-------hhhh--cCCchhhhhhhhHH-----HHHHHHhHHHHHHHHHHHHhcC--Cc-------------------
Confidence 984 2111 12223443221111 1334455666666666654431 11
Q ss_pred CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003768 338 PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (796)
Q Consensus 338 ~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g 417 (796)
++-.. .++-.+|.-.++.+-|+..+..+.+-|+. +...|+.+--+|.-.+.+|.++--|......-
T Consensus 323 --nvEai-----------Acia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlsta 388 (478)
T KOG1129|consen 323 --NVEAI-----------ACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTA 388 (478)
T ss_pred --cceee-----------eeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence 11111 55667788889999999999999999965 45567777777778899999999998877654
Q ss_pred CCCCcc--cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 418 INPRLR--SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 418 i~Pd~~--ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
-.|+.. .|-.|=......||+..|.+.|.-...+. .-+...||.|--.-.+.|++++|..+++.-.+.
T Consensus 389 t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 389 TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 444432 23334444556799999999998877654 234567888877778999999999999877654
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.19 E-value=0.52 Score=50.98 Aligned_cols=227 Identities=11% Similarity=-0.023 Sum_probs=144.0
Q ss_pred CcchHHHHHHHHHhcCCCCCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccC
Q 003768 165 NDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (796)
Q Consensus 165 ~~~~A~~vf~~M~~~g~~~~~g~~Pd--~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~ 242 (796)
..+.+..-+.++..... ..|+ ...|..+=..|.+.|+.++|...|++..+.. +-+...|+.+=..+.
T Consensus 41 ~~e~~i~~~~~~l~~~~-----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~----- 109 (296)
T PRK11189 41 QQEVILARLNQILASRD-----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLT----- 109 (296)
T ss_pred HHHHHHHHHHHHHcccc-----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH-----
Confidence 34456666666643221 1222 2345556667889999999999999998753 235678888877887
Q ss_pred CcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCccee
Q 003768 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (796)
Q Consensus 243 ~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty 322 (796)
..|++++|...|+ ...+. .-.+...|..+-.. +...|++++|.+.|+.-.... |+....
T Consensus 110 -----~~g~~~~A~~~~~-------~Al~l-~P~~~~a~~~lg~~------l~~~g~~~eA~~~~~~al~~~--P~~~~~ 168 (296)
T PRK11189 110 -----QAGNFDAAYEAFD-------SVLEL-DPTYNYAYLNRGIA------LYYGGRYELAQDDLLAFYQDD--PNDPYR 168 (296)
T ss_pred -----HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 8899999999995 22221 11144556666666 788899999999998877652 332111
Q ss_pred ccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003768 323 LNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD 402 (796)
Q Consensus 323 ~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~ 402 (796)
......+...++.++|.+.|.+..... .|+...+ .+ .....|+
T Consensus 169 ---------------------------------~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~ 211 (296)
T PRK11189 169 ---------------------------------ALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGK 211 (296)
T ss_pred ---------------------------------HHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HH--HHHHccC
Confidence 222222345678999999997755432 3333222 22 2334566
Q ss_pred hHHHHHHHHHHHHC-CC----CC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003768 403 GDMAFDMVKRMKSL-GI----NP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462 (796)
Q Consensus 403 ~~~A~~l~~~M~~~-gi----~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~ 462 (796)
.+++ +.++.+.+. .. .| ....|.-+=..+.+.|+.++|...|+...+.+ .||-+.+..
T Consensus 212 ~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 212 ISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred CCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 6554 355555432 11 11 12467778888999999999999999988765 346666554
No 80
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.15 E-value=0.24 Score=51.21 Aligned_cols=160 Identities=12% Similarity=0.025 Sum_probs=110.1
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+-+.|++++|...|++..... |+.... .++ + ..+-..|.+.|++++|..
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~--p~~~~~-----~~a-------------~-----------~~la~~~~~~~~~~~A~~ 91 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRY--PFSPYA-----EQA-------------Q-----------LDLAYAYYKSGDYAEAIA 91 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCchhH-----HHH-------------H-----------HHHHHHHHhcCCHHHHHH
Confidence 778899999999998886642 322110 001 1 445567788899999999
Q ss_pred HHHHHHhCCCCCCHH--HHHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCcc-cHH----------------
Q 003768 374 IYEKMCLDEVPMNEA--SLTAVGRMAMSM--------GDGDMAFDMVKRMKSLGINPRLR-SYG---------------- 426 (796)
Q Consensus 374 lf~~M~~~gi~pd~~--ty~~LI~~~~~~--------g~~~~A~~l~~~M~~~gi~Pd~~-ty~---------------- 426 (796)
.|+++.+..-..... ++..+-.++... |+.++|.+.|+.+.+. .|+.. .+.
T Consensus 92 ~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~ 169 (235)
T TIGR03302 92 AADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKE 169 (235)
T ss_pred HHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHH
Confidence 999998753211121 343344444443 6788999999988765 34432 111
Q ss_pred -HHHHHHHHcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 427 -PALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 427 -~LI~~~~~~G~~~~A~~l~~~M~~~g--v~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+-..+.+.|+.++|...++...+.. -......+..+..++.+.|+.++|..+++.+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23345778899999999999988753 1223567889999999999999999999988776
No 81
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.21 Score=52.49 Aligned_cols=246 Identities=13% Similarity=0.083 Sum_probs=136.4
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCS--KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~--k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~ 237 (796)
+-+.....+|++|...|. ..|+...=..-+.+.. ..+|+..+..+.++....| +-..+|+.-|
T Consensus 88 LY~A~i~ADALrV~~~~~---------D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en------~Ad~~in~gC 152 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLL---------DNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN------EADGQINLGC 152 (459)
T ss_pred HHHhcccHHHHHHHHHhc---------CCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC------ccchhccchh
Confidence 335556667777777761 1122222222222222 3456666666666655333 1112232222
Q ss_pred ccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCC
Q 003768 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (796)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~P 317 (796)
..| +.|+.+.|.+-|. +...-+|..+.+.||.-+.. | +.++.+.|+++..|+.++|++-
T Consensus 153 ------lly-kegqyEaAvqkFq-------aAlqvsGyqpllAYniALaH------y-~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 153 ------LLY-KEGQYEAAVQKFQ-------AALQVSGYQPLLAYNLALAH------Y-SSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred ------eee-ccccHHHHHHHHH-------HHHhhcCCCchhHHHHHHHH------H-hhhhHHHHHHHHHHHHHhhhhc
Confidence 123 8999999999994 44444477788889987765 4 6788999999999999999652
Q ss_pred CcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 003768 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRM 396 (796)
Q Consensus 318 d~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~-gi~pd~~ty~~LI~~ 396 (796)
- .-++-|...+...+ +..-|..+.+.= .-..+.|.-..-+.+.++.+.|.+-+-+|.-+ .-..|.+|...+.-.
T Consensus 212 H-PElgIGm~tegiDv--rsvgNt~~lh~S--al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~ 286 (459)
T KOG4340|consen 212 H-PELGIGMTTEGIDV--RSVGNTLVLHQS--ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM 286 (459)
T ss_pred C-CccCccceeccCch--hcccchHHHHHH--HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh
Confidence 1 11211111111100 000000000000 00000022233456777888888888888643 334677777665433
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHH
Q 003768 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (796)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M 448 (796)
-+ .+++.+...-+.-+...+-. -..||..++--||++.-++.|-.++.+-
T Consensus 287 n~-~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 287 NM-DARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred cc-cCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 22 34455555555555544322 3468888999999999999999888764
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.95 E-value=0.96 Score=49.76 Aligned_cols=90 Identities=12% Similarity=0.003 Sum_probs=37.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHh
Q 003768 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPEE--PELEALLRVSVE 469 (796)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv-~pd~--~ty~~LI~~~~~ 469 (796)
+...+...|++++|...+++..+.. ..+...+..+-..|...|+.++|...++......- .|+. ..|..+-..+..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3334444555555555555444331 11222333333444444555555555444433210 1111 122334444445
Q ss_pred cCChhHHHHHHHHH
Q 003768 470 AGKGDRVYYLLHKL 483 (796)
Q Consensus 470 ~G~~~~A~~ll~~M 483 (796)
.|+.++|..++++.
T Consensus 199 ~G~~~~A~~~~~~~ 212 (355)
T cd05804 199 RGDYEAALAIYDTH 212 (355)
T ss_pred CCCHHHHHHHHHHH
Confidence 55555555555554
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.066 Score=57.34 Aligned_cols=135 Identities=12% Similarity=0.030 Sum_probs=95.6
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH-HHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCN 434 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI-~~~~~ 434 (796)
-++-+.+.-..++++++-.+...+.--..-|..-|| +..+++..|...+|+++|-.+....+ -|..+|-+++ .+|.+
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHh
Confidence 566667777778888888888887765555666666 77888999999999999976654433 3566776655 57788
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH
Q 003768 435 NGDVDKACSVEEHMLEHGVYPEEPELE-ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~pd~~ty~-~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~ 497 (796)
++..+.|++++-.|... -+..+.- .+-+.|-+++.+--|-+.|+++... .|+|+-|+-
T Consensus 441 nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWeG 499 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWEG 499 (557)
T ss_pred cCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccCC
Confidence 99999998887665432 2233332 3335567888888888888888877 788875543
No 84
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.89 E-value=0.088 Score=56.53 Aligned_cols=127 Identities=10% Similarity=0.071 Sum_probs=98.9
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~g-i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~ 434 (796)
..+|...-+.+.++.|..+|.+.++.+ +...+....++|.- ...++.+.|..+|+...+. +.-+..-|..-|..+.+
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Confidence 778888888999999999999998654 33444444444433 3357788899999998876 55577778889999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 435 NGDVDKACSVEEHMLEHGVYPEE----PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~pd~----~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|+.+.|..+|+..... + |.. ..|...|+.=.+.|+++.+..+..++.+.
T Consensus 83 ~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 83 LNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp TT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999998876 3 443 48999999999999999999999999886
No 85
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.82 E-value=0.18 Score=47.12 Aligned_cols=91 Identities=12% Similarity=0.144 Sum_probs=47.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~ 437 (796)
+...+.+.|++++|.+.|+.....+ +.+...|..+...+.+.|++++|..+++...+.+ ..+...|..+-..|...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCC
Confidence 3344555556666666665555433 2344555555555556666666666665544432 2233344444445555556
Q ss_pred hHHHHHHHHHHHh
Q 003768 438 VDKACSVEEHMLE 450 (796)
Q Consensus 438 ~~~A~~l~~~M~~ 450 (796)
.++|...|+...+
T Consensus 101 ~~~A~~~~~~al~ 113 (135)
T TIGR02552 101 PESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 6666555555554
No 86
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.82 E-value=0.3 Score=45.56 Aligned_cols=99 Identities=8% Similarity=-0.039 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~ 465 (796)
+......+...+...|+.++|...|+.....+ ..+...|..+-..+.+.|+.++|..+++...+.+ ..+...+..+-.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 34556777888889999999999999987753 2356777778888889999999999999887764 335667777777
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 003768 466 VSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 466 ~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|...|+.++|...|+...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 889999999999999998876
No 87
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.81 E-value=0.36 Score=56.52 Aligned_cols=224 Identities=9% Similarity=-0.013 Sum_probs=150.2
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.+.+.|-..+|..+|+.+ ..|--+|..|+..|+..+|..+..+-.+ -+||..-|..|.+..-
T Consensus 407 ll~slGitksAl~I~Erl---------------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~- 468 (777)
T KOG1128|consen 407 LLLSLGITKSALVIFERL---------------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH- 468 (777)
T ss_pred HHHHcchHHHHHHHHHhH---------------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc-
Confidence 566778888999999999 8999999999999999999988888776 4688888888887776
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcC-CCC
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QFS 317 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~G-i~P 317 (796)
.---+++|.+++. ..+.+. -..++-+ ....+++.++.+.|+.-.+.. +.+
T Consensus 469 ---------d~s~yEkawElsn------~~sarA-----~r~~~~~---------~~~~~~fs~~~~hle~sl~~nplq~ 519 (777)
T KOG1128|consen 469 ---------DPSLYEKAWELSN------YISARA-----QRSLALL---------ILSNKDFSEADKHLERSLEINPLQL 519 (777)
T ss_pred ---------ChHHHHHHHHHhh------hhhHHH-----HHhhccc---------cccchhHHHHHHHHHHHhhcCccch
Confidence 3345678888875 111110 0001111 233567777777776543331 111
Q ss_pred CcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 003768 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRM 396 (796)
Q Consensus 318 d~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~ 396 (796)
+ +| =..=.+..+.++++.|.+-|..-..- .| +...||++-.+
T Consensus 520 ~------------------------~w-----------f~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~a 562 (777)
T KOG1128|consen 520 G------------------------TW-----------FGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTA 562 (777)
T ss_pred h------------------------HH-----------HhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHH
Confidence 1 11 00111233556788888888776542 34 45689999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHH
Q 003768 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-VYPEEPELEALLRVS 467 (796)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g-v~pd~~ty~~LI~~~ 467 (796)
|.+.++-.+|+..+.+-.+.+ .-+...|.--+.-..+.|.+++|.+.+..|.... -.-|......++...
T Consensus 563 yi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 563 YIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 999999999999999988877 4455566666677788999999999988876531 112444444444443
No 88
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.75 E-value=0.14 Score=42.60 Aligned_cols=90 Identities=18% Similarity=0.163 Sum_probs=39.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003768 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (796)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~ 472 (796)
+...+...|++++|..++++..+.. ..+...+..+-..+...|+.++|.+.++...... ..+...+..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3344444455555555554443321 1111333334444444455555555554444332 1122344444445555555
Q ss_pred hhHHHHHHHHHH
Q 003768 473 GDRVYYLLHKLR 484 (796)
Q Consensus 473 ~~~A~~ll~~M~ 484 (796)
.++|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.73 E-value=0.62 Score=47.65 Aligned_cols=147 Identities=16% Similarity=0.162 Sum_probs=110.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNG 436 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G 436 (796)
+--+|...|+...|.+-+++..+.. +-+.-+|..+...|-+.|+.+.|.+-|+.-.+. .|+ -.+.|-.=..+|..|
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCC
Confidence 4458999999999999999988864 345679999999999999999999999987654 343 233333444578999
Q ss_pred ChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhchHH
Q 003768 437 DVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEA 507 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~I~~~~~~~~~ 507 (796)
..++|...|+.-...--.| -..+|..+--+..+.|+.+.|...|.+-.+......+.....-...++.+..
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDY 189 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccc
Confidence 9999999999988763333 3457777777778999999999999998887544444444445555554443
No 90
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.71 E-value=1.1 Score=46.36 Aligned_cols=60 Identities=12% Similarity=0.029 Sum_probs=48.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC--CCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 392 AVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g--i~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
.+...+.+.|+.++|...+++..+.. -......+..+..++.+.|+.++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45667888999999999999987652 1123467788999999999999999999888764
No 91
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.67 E-value=0.5 Score=47.99 Aligned_cols=127 Identities=13% Similarity=0.125 Sum_probs=97.7
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHH-HHcCC--hHH
Q 003768 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVF-CNNGD--VDK 440 (796)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~-~~~G~--~~~ 440 (796)
.++.+++...++...... +.|...|..|-..|...|+.++|...|+...+. .| +...+..+-.++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 456677777777666554 668889999999999999999999999987765 34 455555555553 56677 599
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hHHHHH
Q 003768 441 ACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP-STADVI 498 (796)
Q Consensus 441 A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p-~t~~~I 498 (796)
|.+++++..+.. | +...+..|-..+...|++++|...++++.+. .+.. +-+.+|
T Consensus 129 A~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l--~~~~~~r~~~i 184 (198)
T PRK10370 129 TREMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLDL--NSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCccHHHHH
Confidence 999999999865 5 5567777888889999999999999999886 3333 345555
No 92
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.50 E-value=5 Score=45.14 Aligned_cols=280 Identities=10% Similarity=0.050 Sum_probs=170.6
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~ 239 (796)
-+..++...|++||+... ...|+...|++.|+-=.+-...+.|..+|++.+-- -|++.+|---..-=-
T Consensus 151 EE~LgNi~gaRqiferW~--------~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~-- 218 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWM--------EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEE-- 218 (677)
T ss_pred HHHhcccHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHH--
Confidence 456788999999999862 25788899999999999999999999999999854 488888866555544
Q ss_pred ccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC--CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCC
Q 003768 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (796)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~P 317 (796)
++|.+..|..+|. ...+..|-. +...+++.-.- -.+...++.|.-+|.--... -|
T Consensus 219 --------k~g~~~~aR~Vye-------rAie~~~~d~~~e~lfvaFA~f------Ee~qkE~ERar~iykyAld~--~p 275 (677)
T KOG1915|consen 219 --------KHGNVALARSVYE-------RAIEFLGDDEEAEILFVAFAEF------EERQKEYERARFIYKYALDH--IP 275 (677)
T ss_pred --------hcCcHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh--cC
Confidence 7888888888774 111110000 11112222111 11122233333333222211 01
Q ss_pred Ccce---ec-----------cchhhhHHhhhhcC------CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHH
Q 003768 318 NGHM---KL-----------NSQLLDGRSNLERG------PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEK 377 (796)
Q Consensus 318 d~~t---y~-----------~g~~~~A~~l~~~m------~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~ 377 (796)
..-+ |. ...++++..--..+ ..|..-|.+| =-.+.---..|+.++..++|+.
T Consensus 276 k~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsW--------fdylrL~e~~g~~~~Ire~yEr 347 (677)
T KOG1915|consen 276 KGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSW--------FDYLRLEESVGDKDRIRETYER 347 (677)
T ss_pred cccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHH--------HHHHHHHHhcCCHHHHHHHHHH
Confidence 1100 00 11122222221222 3444445211 2334444456888888899988
Q ss_pred HHhCCCCCCH-------HHHHHHHHHH---HhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHH----HcCChHHHHH
Q 003768 378 MCLDEVPMNE-------ASLTAVGRMA---MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC----NNGDVDKACS 443 (796)
Q Consensus 378 M~~~gi~pd~-------~ty~~LI~~~---~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~----~~G~~~~A~~ 443 (796)
.... ++|-. ..|--+=-+| ....|++.+.++++...+. ++-..+||.-+--.|+ ++.++..|.+
T Consensus 348 AIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARk 425 (677)
T KOG1915|consen 348 AIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARK 425 (677)
T ss_pred HHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHH
Confidence 7754 45521 1121111111 2467888899999888773 5556788887776666 4678888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
++...+ |.-|-..+|-.-|..=.+.+.+|+...|+++..+-
T Consensus 426 iLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 426 ILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 887654 55688888888888888889999999999888876
No 93
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.48 E-value=0.27 Score=47.14 Aligned_cols=92 Identities=10% Similarity=-0.102 Sum_probs=43.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003768 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (796)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~ 472 (796)
+-..+...|++++|...|....... ..+...|..+-..+.+.|+.++|...|+...+.. ..+...+..+-.++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444445555555555555544331 1233344444444555555555555555555432 1233444444445555555
Q ss_pred hhHHHHHHHHHHhC
Q 003768 473 GDRVYYLLHKLRTS 486 (796)
Q Consensus 473 ~~~A~~ll~~M~~~ 486 (796)
.++|...|+.....
T Consensus 108 ~~eAi~~~~~Al~~ 121 (144)
T PRK15359 108 PGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555554443
No 94
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.46 E-value=0.18 Score=41.94 Aligned_cols=94 Identities=17% Similarity=0.127 Sum_probs=75.6
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+...+...|++++|..+|++..+.. +.+...+..+...+...+++++|.+.++...... ..+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 345566778899999999999988753 3344778888999999999999999999887653 23345777888899999
Q ss_pred CChHHHHHHHHHHHhC
Q 003768 436 GDVDKACSVEEHMLEH 451 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~ 451 (796)
|+.++|...+....+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 9999999999887653
No 95
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=2.2 Score=48.09 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=88.9
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------cccH--HHHHH
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-------LRSY--GPALS 430 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-------~~ty--~~LI~ 430 (796)
-+..|.+++++++..|++-+++ .+--.-.||-....+...++++.|.+.|+...+. .|+ .-.+ -.+|-
T Consensus 436 ~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 436 CALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhh
Confidence 3445677899999999998876 3445668888889999999999999999876543 222 1111 11222
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 431 VFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 431 ~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.-- .+++..|..++....+.. | ....|.+|-..-.+.|++++|.++|++-..-
T Consensus 513 ~qw-k~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 513 LQW-KEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hch-hhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 222 388999999998887743 3 4567899999999999999999999986543
No 96
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.42 E-value=3.4 Score=46.65 Aligned_cols=117 Identities=12% Similarity=0.043 Sum_probs=95.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~ 434 (796)
....+-+.+.++..+|.+.|+.+... .|+ ....-.+-.+|.+.|++.+|..+++.-... .+-|...|..|-.+|..
T Consensus 344 ~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~ 420 (484)
T COG4783 344 ELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAE 420 (484)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHH
Confidence 55677888999999999999999876 455 556667888999999999999999987655 55688899999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 003768 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~ 493 (796)
.|+..+|..-..++ |...|.++.|...+...++....-.|+
T Consensus 421 ~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~~~~~~~~~ 461 (484)
T COG4783 421 LGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQQVKLGFPD 461 (484)
T ss_pred hCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHHhccCCcHH
Confidence 99998887766554 456899999999998888875444454
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.32 E-value=0.46 Score=45.55 Aligned_cols=102 Identities=8% Similarity=0.012 Sum_probs=84.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~ 437 (796)
+-..+...|++++|...|+...... +.+..+|..+-.++.+.|++++|...|+...... ..+...+..+-.++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3456778999999999999988764 4578899999999999999999999999998753 3466777778888999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003768 438 VDKACSVEEHMLEHGVYPEEPELEAL 463 (796)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (796)
.++|...|+...+.. |+...|..+
T Consensus 108 ~~eAi~~~~~Al~~~--p~~~~~~~~ 131 (144)
T PRK15359 108 PGLAREAFQTAIKMS--YADASWSEI 131 (144)
T ss_pred HHHHHHHHHHHHHhC--CCChHHHHH
Confidence 999999999988754 776655533
No 98
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.25 E-value=0.14 Score=59.16 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=49.9
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+-+-|+..|+++.|.++|-+- -.++--|.+|.+.|+++.|+++-++. .|-...+..|-+--.-+-+.
T Consensus 769 ~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldeh 837 (1636)
T KOG3616|consen 769 GEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEH 837 (1636)
T ss_pred hHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhh
Confidence 44555555566666666555431 12344556666666666666654432 22233333444333334444
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 003768 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~ 481 (796)
|++.+|.+++-.+.. |+ .-|.+|-+.|..|.+.++..
T Consensus 838 gkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 838 GKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred cchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHH
Confidence 555444444422111 22 22445555555555555443
No 99
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.24 E-value=0.37 Score=46.12 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=87.3
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc--cHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR--SYGPALSV 431 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~p--d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~--ty~~LI~~ 431 (796)
..++..+ ..++...+.+.++.+....-.- .....=.+...+...|++++|...|+......-.|... ..-.|-..
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~ 94 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARI 94 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 4455555 4788899999999998864111 11222334577888999999999999998876333322 23335667
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003768 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (796)
Q Consensus 432 ~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~ 482 (796)
+...|+.++|...++......+ ....+..+=+.|.+.|+.++|...|+.
T Consensus 95 ~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 95 LLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7789999999999977544333 334556677788999999999998875
No 100
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.18 E-value=0.18 Score=56.49 Aligned_cols=117 Identities=10% Similarity=0.113 Sum_probs=94.2
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+...++++.|..+|+++.+.. |++. -.++..+...++-.+|.+
T Consensus 179 l~~t~~~~~ai~lle~L~~~~--pev~-----------------------------------~~LA~v~l~~~~E~~AI~ 221 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERD--PEVA-----------------------------------VLLARVYLLMNEEVEAIR 221 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcC--CcHH-----------------------------------HHHHHHHHhcCcHHHHHH
Confidence 566788999999999998875 4432 335666666778889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~-~ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
++++..... +-|......-.+.|.+.++.+.|+.+.+++.+. .|+. .+|..|..+|.+.|+++.|+..++.|.-
T Consensus 222 ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 222 LLNEALKEN-PQDSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 998888542 446777777788889999999999999998765 5665 4999999999999999999999988753
No 101
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.09 E-value=0.17 Score=47.37 Aligned_cols=98 Identities=16% Similarity=0.121 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~ 465 (796)
|+.++.++|-++++.|+++....+++..- |+.++... ..+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 56677788888888888887777776442 33222100 0000 1122356677777777777
Q ss_pred HHHhcCChhHHHHHHHHHHhCC-CCCChhHHHHHHHHHh
Q 003768 466 VSVEAGKGDRVYYLLHKLRTSV-RKVSPSTADVIAKWFN 503 (796)
Q Consensus 466 ~~~~~G~~~~A~~ll~~M~~~~-~~~~p~t~~~I~~~~~ 503 (796)
+|+..|++..|+++++...+.- +.++..+|..+..|+.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 7777777777777777766542 2233336766666654
No 102
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.01 E-value=0.4 Score=43.17 Aligned_cols=95 Identities=12% Similarity=0.026 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----cccHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCCHHHHHHH
Q 003768 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPELEAL 463 (796)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd----~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g--v~pd~~ty~~L 463 (796)
+-.+...+.+.|+.++|.+.|+.+.... |+ ...+..+-..+.+.|+.+.|...|+.+.... -......+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3444555555666666666666655431 22 1233335555666666666666666655432 01113344555
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 003768 464 LRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 464 I~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
-..+.+.|+.++|...++++...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 55556666666666666666655
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=0.83 Score=48.22 Aligned_cols=278 Identities=10% Similarity=0.003 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhh
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~p-d~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~ 270 (796)
.-++++|..+.+..++..|++++..-.+.. | +....+.|=++|- ...++..|...+..+ .
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY----------~~Q~f~~AA~CYeQL-------~ 71 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYY----------RLQEFALAAECYEQL-------G 71 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHH----------HHHHHHHHHHHHHHH-------H
Confidence 456777777788888888888887766543 3 4445555555554 334455555555311 1
Q ss_pred ccCCCCCcch-hhhcccCccccccccccCChHHHHHHHHHHHHcC------C-CCCcceeccchhhhHHhhhhcCCCCcc
Q 003768 271 DSRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG------Q-FSNGHMKLNSQLLDGRSNLERGPDDQS 342 (796)
Q Consensus 271 ~~~gv~d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~G------i-~Pd~~ty~~g~~~~A~~l~~~m~pd~~ 342 (796)
. .. +-.. |..- +.-.+-+.+.+.+|+++...|.... + .-..+-|+.+++..+..++++...
T Consensus 72 q--l~-P~~~qYrlY-----~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--- 140 (459)
T KOG4340|consen 72 Q--LH-PELEQYRLY-----QAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--- 140 (459)
T ss_pred h--hC-hHHHHHHHH-----HHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC---
Confidence 0 00 0000 0000 0001334455667777766664421 0 011233445566666666666521
Q ss_pred cccccccccccchhhHHH---HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003768 343 RKKDWSIDNQDADEIRLS---EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419 (796)
Q Consensus 343 ty~~~~~~~~~~~n~lI~---~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~ 419 (796)
+.+...+|+ -..+.|+.++|.+-|+...+-|---....||.-+ +..+.|+.+.|+++..++.++|++
T Consensus 141 ---------en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 141 ---------ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred ---------CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 001112222 2357899999999999887754333457888665 566789999999999999988754
Q ss_pred -------------CCcccH--------HHHHHH-------HHHcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 003768 420 -------------PRLRSY--------GPALSV-------FCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEA 470 (796)
Q Consensus 420 -------------Pd~~ty--------~~LI~~-------~~~~G~~~~A~~l~~~M~~~-gv~pd~~ty~~LI~~~~~~ 470 (796)
||+++- +.++.+ +.+.|+.+.|.+-+-+|.-+ .-..|.+|...|--.- -.
T Consensus 211 ~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~ 289 (459)
T KOG4340|consen 211 QHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MD 289 (459)
T ss_pred cCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-cc
Confidence 343321 223333 34668999999998888643 3446777775442221 23
Q ss_pred CChhHHHHHHHHHHhCCCCCChhH-HHHHHHHHhchHHHHhc
Q 003768 471 GKGDRVYYLLHKLRTSVRKVSPST-ADVIAKWFNSKEAARLG 511 (796)
Q Consensus 471 G~~~~A~~ll~~M~~~~~~~~p~t-~~~I~~~~~~~~~~~a~ 511 (796)
+++.+..+-+.-+.... +++++| .+++.-+|++.-..-|.
T Consensus 290 ~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAA 330 (459)
T KOG4340|consen 290 ARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAA 330 (459)
T ss_pred CCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHH
Confidence 44444444444444441 455555 56688889886654443
No 104
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=94.93 E-value=0.78 Score=47.70 Aligned_cols=125 Identities=11% Similarity=0.002 Sum_probs=98.9
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
++.+....+.|++.+|...|.+...-. ++|..+||.+--+|.+.|+.++|..-|.+..+.-. -+...+|-|--.|.-.
T Consensus 104 ~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~ 181 (257)
T COG5010 104 AAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLR 181 (257)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHc
Confidence 446677788999999999999987653 78999999999999999999999999988776522 2334556666777888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003768 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M 483 (796)
|+.+.|..++.+-...+. -|...-..|.-+....|++++|..+...-
T Consensus 182 gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 182 GDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred CCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 999999999998887663 25555667777788899999998876543
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.82 E-value=2 Score=53.96 Aligned_cols=226 Identities=12% Similarity=0.069 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCc
Q 003768 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQRE-GIKLGQ---YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNS 266 (796)
Q Consensus 191 ~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~-Gi~pd~---~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s 266 (796)
...|-.-|.-....++.++|.++++++... +++-.. -.|.++|+.-. -.|.-+...++|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn----------~yG~eesl~kVFe------ 1521 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN----------AYGTEESLKKVFE------ 1521 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH----------hhCcHHHHHHHHH------
Confidence 377888888888888888888888888742 333222 24555555544 3454455566663
Q ss_pred hhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHc-CCCCCcceeccchhhhHHhhhhcCCCCccccc
Q 003768 267 TELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL-GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345 (796)
Q Consensus 267 ~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~-Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~ 345 (796)
.... -+.....|..|..- |.+.+.+++|.++|+.|.++ |..+.+ |
T Consensus 1522 -RAcq--ycd~~~V~~~L~~i------y~k~ek~~~A~ell~~m~KKF~q~~~v------------------------W- 1567 (1710)
T KOG1070|consen 1522 -RACQ--YCDAYTVHLKLLGI------YEKSEKNDEADELLRLMLKKFGQTRKV------------------------W- 1567 (1710)
T ss_pred -HHHH--hcchHHHHHHHHHH------HHHhhcchhHHHHHHHHHHHhcchhhH------------------------H-
Confidence 1111 11123337788777 99999999999999999765 312111 2
Q ss_pred ccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc
Q 003768 346 DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN---EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (796)
Q Consensus 346 ~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd---~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~ 422 (796)
...++.+.+..+-+.|.+++.+..+. .|- +-...-.+..-.+.|+.+.+..+|+..... .+-..
T Consensus 1568 ----------~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRt 1634 (1710)
T KOG1070|consen 1568 ----------IMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRT 1634 (1710)
T ss_pred ----------HHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-Cccch
Confidence 55667777888888888888766543 232 334455556667899999999999988765 23356
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHH
Q 003768 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE--PELEALLRVSVEAGKGDRVYYL 479 (796)
Q Consensus 423 ~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~--~ty~~LI~~~~~~G~~~~A~~l 479 (796)
-.|+..|.+=.++|+.+.++.+|++....++.|-- ..|..-|..=-..|+-..+..+
T Consensus 1635 DlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1635 DLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 78999999999999999999999999998887754 4667777776677775544433
No 106
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=94.80 E-value=4.4 Score=47.20 Aligned_cols=285 Identities=12% Similarity=0.024 Sum_probs=166.2
Q ss_pred hhhHhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003768 156 DNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235 (796)
Q Consensus 156 ~~~~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a 235 (796)
.|+.+.+.+..++|++.+...+.+ +.-....--+--+.+.+.+++++|..+|..+... .||-+-|.-.+..
T Consensus 191 ~n~i~~E~g~~q~ale~L~~~e~~-------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 191 QNQILIEAGSLQKALEHLLDNEKQ-------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEK 261 (700)
T ss_pred HHHHHHHcccHHHHHHHHHhhhhH-------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHH
Confidence 344566777777777776655211 1111123334456788999999999999999976 4888888887777
Q ss_pred HHccccCCcccCCCCChhhHH-HHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcC
Q 003768 236 CSSAAVGVVKPAKSGSGMRTL-DTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (796)
Q Consensus 236 ~~~~~~~~~~~~k~G~~~~A~-~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~G 314 (796)
+.. +.-+.-++. .+|... ++..... .++--..-+. .......+.....+..+.++|
T Consensus 262 ~lg---------k~~d~~~~lk~ly~~l---s~~y~r~-e~p~Rlplsv----------l~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 262 ALG---------KIKDMLEALKALYAIL---SEKYPRH-ECPRRLPLSV----------LNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHH---------HHhhhHHHHHHHHHHH---hhcCccc-ccchhccHHH----------hCcchhHHHHHHHHHHHhhcC
Confidence 661 111222333 444311 1111111 1110000111 111233455567777788888
Q ss_pred CCC---Ccceeccc--h--hhh--HHhhhhcC---------------CCCcccccccccccccchhhHHHHHHhccCHHH
Q 003768 315 QFS---NGHMKLNS--Q--LLD--GRSNLERG---------------PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370 (796)
Q Consensus 315 i~P---d~~ty~~g--~--~~~--A~~l~~~m---------------~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~ 370 (796)
+.| |..+.... + +.+ +..+...+ .|....| ..-.++..|-+.|+++.
T Consensus 319 ~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllW---------t~y~laqh~D~~g~~~~ 389 (700)
T KOG1156|consen 319 VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLW---------TLYFLAQHYDKLGDYEV 389 (700)
T ss_pred CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHH---------HHHHHHHHHHHcccHHH
Confidence 654 44444311 0 111 11111111 2222333 11235677788899999
Q ss_pred HHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHH
Q 003768 371 GFEIYEKMCLDEVPMNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (796)
Q Consensus 371 A~~lf~~M~~~gi~pd~~-ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~ 449 (796)
|.+..+.-... .|+.+ -|-+=.+.+..+|++++|...+++..+... ||...-+-......+++++++|.++.....
T Consensus 390 A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 390 ALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 99999887654 45543 456666889999999999999999887754 666665566777778999999999998888
Q ss_pred hCCCCCCHHHHHHHH----------HHHHhcCChhHHHHHHHHHHhC
Q 003768 450 EHGVYPEEPELEALL----------RVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 450 ~~gv~pd~~ty~~LI----------~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+.|. +...+-+.+ .+|.+.|++.+|++=|+.+...
T Consensus 467 r~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 467 REGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred hccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 7775 333332222 2356667777777666665443
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.80 E-value=3.5 Score=51.86 Aligned_cols=203 Identities=11% Similarity=0.035 Sum_probs=144.9
Q ss_pred CCCChhhHHHHHhhhccCchhhhccCCCC----CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceec
Q 003768 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL 323 (796)
Q Consensus 248 k~G~~~~A~~vf~~~~~~s~em~~~~gv~----d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~ 323 (796)
..+.+++|++++. +....-.+. -.-.|.++++. -..-|.-+...++|++....- |.++.
T Consensus 1470 elsEiekAR~iae-------rAL~tIN~REeeEKLNiWiA~lNl------En~yG~eesl~kVFeRAcqyc---d~~~V- 1532 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAE-------RALKTINFREEEEKLNIWIAYLNL------ENAYGTEESLKKVFERACQYC---DAYTV- 1532 (1710)
T ss_pred hhhhhHHHHHHHH-------HHhhhCCcchhHHHHHHHHHHHhH------HHhhCcHHHHHHHHHHHHHhc---chHHH-
Confidence 5577888888884 333322332 12236666665 444455567778888776542 22221
Q ss_pred cchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003768 324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG 403 (796)
Q Consensus 324 ~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~ 403 (796)
| ..|..-|.+.+..++|-++|+.|.++- .-....|...++.+.+..+.
T Consensus 1533 --------------------~-----------~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~ 1580 (1710)
T KOG1070|consen 1533 --------------------H-----------LKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEA 1580 (1710)
T ss_pred --------------------H-----------HHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHH
Confidence 2 778899999999999999999998752 24567899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCc---ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003768 404 DMAFDMVKRMKSLGINPRL---RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480 (796)
Q Consensus 404 ~~A~~l~~~M~~~gi~Pd~---~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll 480 (796)
+.|..++.+..+. .|.. ....-.+..-.++|+.+.+..+|+.....- +--...|+..|+.=.++|+.+.+..+|
T Consensus 1581 ~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1581 EAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred HHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999886654 4552 222333444557899999999999988753 124578999999999999999999999
Q ss_pred HHHHhCCCCCChh-HHHHHHHHHhc
Q 003768 481 HKLRTSVRKVSPS-TADVIAKWFNS 504 (796)
Q Consensus 481 ~~M~~~~~~~~p~-t~~~I~~~~~~ 504 (796)
++.... ..++- +--..+.|.+.
T Consensus 1658 eRvi~l--~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1658 ERVIEL--KLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHhc--CCChhHhHHHHHHHHHH
Confidence 999999 66665 32235555543
No 108
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.78 E-value=0.23 Score=51.93 Aligned_cols=102 Identities=22% Similarity=0.193 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC----------------hHHHH
Q 003768 384 PMNEASLTAVGRMAMS-----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD----------------VDKAC 442 (796)
Q Consensus 384 ~pd~~ty~~LI~~~~~-----~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~----------------~~~A~ 442 (796)
.-|-.+|-+.+.-+.. .+.++-....++.|++.|+.-|+.+|+.||+.+=+..- -.=|.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3456666666666653 35677777788888899999999999988887765432 22368
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 003768 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRT 485 (796)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~-~~A~~ll~~M~~ 485 (796)
.++++|..+||.||-.+-..||+++.+-+.. .+..+++--|.+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 8999999999999999999999999888764 355555555543
No 109
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.78 E-value=3.3 Score=50.33 Aligned_cols=290 Identities=10% Similarity=-0.004 Sum_probs=163.5
Q ss_pred hcCCcchHHHHHHHHHhc---CCCCCCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003768 162 QRTNDSGQYKVRGITDEK---GSKKSKKDRSEQFQLRVELDMCS-KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (796)
Q Consensus 162 k~~~~~~A~~vf~~M~~~---g~~~~~g~~Pd~~tyn~lI~a~~-k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~ 237 (796)
..+.++.|...|+.-... -..++.+-.++ +|.--.|..|. ..++...|.+.|....+.. |+-++--.=+-+.+
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~-lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTN-LTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMA 540 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccch-hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHH
Confidence 457788888888876443 11223322334 33333333333 3468899999999988652 33222111111122
Q ss_pred ccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcC-CC
Q 003768 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QF 316 (796)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~G-i~ 316 (796)
+ ..+...+|...+. +-+......+++ ++-+=+. +-+...+..|..=|......- ..
T Consensus 541 ~---------~k~~~~ea~~~lk------~~l~~d~~np~a--rsl~G~~------~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 541 R---------DKNNLYEASLLLK------DALNIDSSNPNA--RSLLGNL------HLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred H---------hccCcHHHHHHHH------HHHhcccCCcHH--HHHHHHH------HHhhhhhcccccHHHHHHhhhccC
Confidence 1 2355566666663 111111011111 1111112 333344444443333222211 11
Q ss_pred CCcceec--------------------cchhhhHHhhhhcC----CCCcccccccccccccchhhHHHHHHhccCHHHHH
Q 003768 317 SNGHMKL--------------------NSQLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (796)
Q Consensus 317 Pd~~ty~--------------------~g~~~~A~~l~~~m----~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~ 372 (796)
+|.++.- .+..++|+.++... ..|...- |-+=-.++..|++.+|.
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAA-----------NGIgiVLA~kg~~~~A~ 666 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAA-----------NGIGIVLAEKGRFSEAR 666 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhc-----------cchhhhhhhccCchHHH
Confidence 2322221 34566777776654 2222222 44445577889999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 373 ~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
.||.+.++... -+.-+|-.|.++|...|++..|.++|+...+. .-.-+...-+.|-.++-++|.+.+|.+....-...
T Consensus 667 dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 667 DIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999998753 23457888999999999999999999986554 43445566677778888899999998877655443
Q ss_pred CCCCCHHHHHHHHHHH------------------HhcCChhHHHHHHHHHHhCCCC
Q 003768 452 GVYPEEPELEALLRVS------------------VEAGKGDRVYYLLHKLRTSVRK 489 (796)
Q Consensus 452 gv~pd~~ty~~LI~~~------------------~~~G~~~~A~~ll~~M~~~~~~ 489 (796)
-..-..+.||..+-.. ...+.++.|.++|.+|...+-.
T Consensus 746 ~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 746 APSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred CCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3223334555444332 2245577899999999887433
No 110
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.76 E-value=0.66 Score=54.04 Aligned_cols=159 Identities=12% Similarity=0.034 Sum_probs=99.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC
Q 003768 197 ELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD 276 (796)
Q Consensus 197 lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~ 276 (796)
.|.+..++..+.+|+.+++.+....... .-|.-+-.-|+ ..|.++.|.++|. +
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s--~yy~~iadhya----------n~~dfe~ae~lf~-------e-------- 790 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTAS--GYYGEIADHYA----------NKGDFEIAEELFT-------E-------- 790 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcccc--ccchHHHHHhc----------cchhHHHHHHHHH-------h--------
Confidence 3445556667777777777776554321 23444444444 8899999999994 1
Q ss_pred CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceec--------cchhhhHHhhhhcC-CCCccccccc
Q 003768 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL--------NSQLLDGRSNLERG-PDDQSRKKDW 347 (796)
Q Consensus 277 d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~--------~g~~~~A~~l~~~m-~pd~~ty~~~ 347 (796)
.--++-.|.. |.+.|++++|.++-.+. .|-....+.|- +|+..+|.+++-.+ .|+
T Consensus 791 -~~~~~dai~m------y~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~------- 854 (1636)
T KOG3616|consen 791 -ADLFKDAIDM------YGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPD------- 854 (1636)
T ss_pred -cchhHHHHHH------HhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCch-------
Confidence 1124556777 99999999999986543 44444555664 78888888876665 553
Q ss_pred ccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003768 348 SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMV 410 (796)
Q Consensus 348 ~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~ 410 (796)
-.|..|-+.|..++.+++.+.-.-..+ .-|--.+..-|-..|++..|..-|
T Consensus 855 ---------~aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 855 ---------KAIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred ---------HHHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHH
Confidence 456778888888888877664322111 123333444455556666665555
No 111
>KOG3777 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=0.019 Score=64.11 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=74.2
Q ss_pred CcceeeecceeecccCC--CCChhhHHHHHHHHHhhCCCCCceEEEeccccccCCCCCChhhHHHHHHHHHcCceEecCC
Q 003768 604 PFEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPT 681 (796)
Q Consensus 604 pyD~VIDG~nva~~~~~--~~~~~~l~~vv~~~~~~~~~~~~~livl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 681 (796)
-.-+||||.|||+-.-| -|+...+...++++.+ .+.+...+++ ...|.. +..|.+ ++.++.+...+-+||.
T Consensus 12 ~~P~~i~~~~~~ls~G~~~~f~~r~~~v~~~~~~~-~~~rd~tv~~-~~~r~e---~~~p~~--~l~~l~~~~~~~ftp~ 84 (443)
T KOG3777|consen 12 LRPVVIHGSNLALSQGNEEVFSCRGILVSVDWFLQ-RGHRDITVLV-PSWRKE---ATRPDA--ILRELEEKKILVFTPD 84 (443)
T ss_pred ccCceeeccchhhcccchhheecccceeehhhhhh-hcccCcchhc-hhhhhc---CCchHH--HHHHHHhccccccCCC
Confidence 35689999999964433 5777888888988887 2223322322 222222 224443 7777777777777988
Q ss_pred C--------CCccHHHHHHHHhcCcEEEeCCccccccccc
Q 003768 682 G--------SNDDWYWLYAAIKFKCLLVTNDEMRDHTFQL 713 (796)
Q Consensus 682 ~--------s~DD~~~lyaa~~~~~~~vsnD~mRdH~~~l 713 (796)
. .+||+|+.--|.+.+.+|++||..||..-+.
T Consensus 85 ~~~~~~r~~c~~~rf~~~~~~~s~~~~~~~dn~rd~~le~ 124 (443)
T KOG3777|consen 85 RSIQGSRVICYDRRFSASLARESDGIVSLNDNYRDLILES 124 (443)
T ss_pred hhhccceeeeehhhhHhhhhccccceecCCchHHHHHhhc
Confidence 7 7999999999999999999999999987644
No 112
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.59 E-value=1.8 Score=45.31 Aligned_cols=121 Identities=18% Similarity=0.141 Sum_probs=88.5
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC
Q 003768 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~----~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G 436 (796)
.+.|..+++-|...++.|.+-. +..|.+-|..++.+ .+.+.+|+-+|++|.+. ..|+.-+-+....++...|
T Consensus 146 I~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhc
Confidence 3455668889999999998753 67787766666654 56788999999998764 6788888888888888899
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHHhC
Q 003768 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD-RVYYLLHKLRTS 486 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~-~A~~ll~~M~~~ 486 (796)
++++|..++++...+.- -+..+...||-.--..|... -..+.+..++..
T Consensus 222 ~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 99999999998887642 34556666665555566554 345666666655
No 113
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.28 E-value=7.5 Score=48.77 Aligned_cols=275 Identities=14% Similarity=0.027 Sum_probs=150.7
Q ss_pred hcCCcchHHHHHHHHHhcCCCCCCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 003768 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQF--QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ----YHYNVLLYL 235 (796)
Q Consensus 162 k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~--tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~----~tyn~LL~a 235 (796)
..++.++|..+++.....-...+.+..|... ....+-..+...|++++|...+++....--..+. ...+.+-..
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 4467777888777664321111111112211 1112223456789999999999998753111122 122323233
Q ss_pred HHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCC--cchhhhcccCccccccccccCChHHHHHHHHHHHHc
Q 003768 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN--NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (796)
Q Consensus 236 ~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d--~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~ 313 (796)
+. ..|++++|...+.-. .+.....|-.. ..+++.+-.. +...|++++|...+++....
T Consensus 501 ~~----------~~G~~~~A~~~~~~a----l~~~~~~g~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 501 HH----------CKGELARALAMMQQT----EQMARQHDVYHYALWSLLQQSEI------LFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HH----------HcCCHHHHHHHHHHH----HHHHhhhcchHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHH
Confidence 33 679999998888410 01111111111 1223333334 67889999999888776542
Q ss_pred ----CCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhC--CCCC--
Q 003768 314 ----GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EVPM-- 385 (796)
Q Consensus 314 ----Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~--gi~p-- 385 (796)
|. ++.... ...+ ..+-..+...|++++|...+++.... ...+
T Consensus 561 ~~~~~~-~~~~~~------------------~~~~-----------~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 610 (903)
T PRK04841 561 IEEQHL-EQLPMH------------------EFLL-----------RIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ 610 (903)
T ss_pred HHHhcc-ccccHH------------------HHHH-----------HHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence 11 010000 0001 23334456679999999998876542 1112
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCcccH-----HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH--
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-PRLRSY-----GPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-- 457 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~-Pd~~ty-----~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~-- 457 (796)
...++..+...+...|+.++|...+.+.....-. .....+ ...+..+...|+.+.|.+++............
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence 2345555677788899999999998887542110 111111 11224455689999999988775542211111
Q ss_pred -HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 458 -PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 458 -~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..+..+-.++...|+.++|..++.+....
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11345666678889999999999887653
No 114
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=94.28 E-value=14 Score=43.50 Aligned_cols=277 Identities=13% Similarity=0.064 Sum_probs=171.6
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~ 239 (796)
....+..++-..+|.+....- .+.. +.|-....-+-.+||+.+|..++....+..-. +...|-+-+..-.
T Consensus 560 ek~hgt~Esl~Allqkav~~~-pkae------~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~-- 629 (913)
T KOG0495|consen 560 EKSHGTRESLEALLQKAVEQC-PKAE------ILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEF-- 629 (913)
T ss_pred HHhcCcHHHHHHHHHHHHHhC-Ccch------hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhh--
Confidence 334556677777888775542 1222 67777777888889999999999998876422 5667777777777
Q ss_pred ccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcch-hhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC
Q 003768 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (796)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd 318 (796)
....+++|..+|. ......|-+-+.+ +-.+ .--.+..++|.+++++-.+. .|+
T Consensus 630 --------en~e~eraR~lla-------kar~~sgTeRv~mKs~~~---------er~ld~~eeA~rllEe~lk~--fp~ 683 (913)
T KOG0495|consen 630 --------ENDELERARDLLA-------KARSISGTERVWMKSANL---------ERYLDNVEEALRLLEEALKS--FPD 683 (913)
T ss_pred --------ccccHHHHHHHHH-------HHhccCCcchhhHHHhHH---------HHHhhhHHHHHHHHHHHHHh--CCc
Confidence 7788999999995 3332222222222 2222 22356788888888776654 243
Q ss_pred cceec---------cchhhhHHhhhhcC---CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCC
Q 003768 319 GHMKL---------NSQLLDGRSNLERG---PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN 386 (796)
Q Consensus 319 ~~ty~---------~g~~~~A~~l~~~m---~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd 386 (796)
..-+= .++++.|...+... .|+.+-. +-.+..---+.|.+-+|..+|+.-+.++ +-|
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL----------WllLakleEk~~~~~rAR~ildrarlkN-Pk~ 752 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL----------WLLLAKLEEKDGQLVRARSILDRARLKN-PKN 752 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchH----------HHHHHHHHHHhcchhhHHHHHHHHHhcC-CCc
Confidence 32211 33444455544444 5555443 1444455556778889999999888775 557
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHH------------------------------HHHHHHcC
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA------------------------------LSVFCNNG 436 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~L------------------------------I~~~~~~G 436 (796)
...|-..|++=.+.|..+.|..++.+..+. +.-+-..|.-. -..|-...
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~ 831 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEK 831 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 888999999999999999988877665443 22222223222 23333345
Q ss_pred ChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 437 DVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~-~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+++|.+.|..-+..+ ||. .+|.-+...+.++|.-++-.+++......
T Consensus 832 k~~kar~Wf~Ravk~d--~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 832 KIEKAREWFERAVKKD--PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHHccC--CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 5666666666666543 432 45666666667777666666666665544
No 115
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.23 E-value=2 Score=46.01 Aligned_cols=112 Identities=16% Similarity=0.183 Sum_probs=65.3
Q ss_pred cCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----Ccc-cHHHHHHHHHH
Q 003768 366 YAFQRGFEIYEKMCL----DEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-----RLR-SYGPALSVFCN 434 (796)
Q Consensus 366 g~~~~A~~lf~~M~~----~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-----d~~-ty~~LI~~~~~ 434 (796)
|++++|.+.|++-.+ .|-.- -..++.-+...+.+.|++++|.++|++....-+.- ++. .|-..+-.+..
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 566666666655442 23111 13456778888999999999999999987654332 222 22334445666
Q ss_pred cCChHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChhHHHH
Q 003768 435 NGDVDKACSVEEHMLEH--GVYPE--EPELEALLRVSVEAGKGDRVYY 478 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~--gv~pd--~~ty~~LI~~~~~~G~~~~A~~ 478 (796)
.||...|.+.++..... ++..+ -.....||.+| +.|+.+....
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~ 255 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTE 255 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHH
T ss_pred cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHH
Confidence 79999999999988754 33222 33456666665 4455544333
No 116
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=94.21 E-value=15 Score=43.19 Aligned_cols=189 Identities=16% Similarity=0.171 Sum_probs=102.5
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCh
Q 003768 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (796)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~ 438 (796)
...+...|++..|..++...-+.. +-++-.|-+-++.-.....++.|..+|.+-.. ..|..+.|.--++..--.|+.
T Consensus 591 ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhH
Confidence 344444556666666655555443 22455555555555555566666666654332 344555554444444444555
Q ss_pred HHHHHHHHHHHh------------------------------CCC--CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 439 DKACSVEEHMLE------------------------------HGV--YP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 439 ~~A~~l~~~M~~------------------------------~gv--~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
++|.+++++..+ .|. .| .+..|-.|-+.=-+.|.+-+|..+|++-+-
T Consensus 668 eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 668 EEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 555544433322 121 23 334555555555677888888888888776
Q ss_pred CCCCCChh-HH-HHHHHHHhchHHHHhccccchhhHHHHHhh---hcCCCccccccCCCceeEEEEeeccCCCcccccc
Q 003768 486 SVRKVSPS-TA-DVIAKWFNSKEAARLGKKKWNESLIKDTME---NKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCG 559 (796)
Q Consensus 486 ~~~~~~p~-t~-~~I~~~~~~~~~~~a~~~~~~~~~v~ea~~---~~g~~~~~m~~~g~~p~~v~~t~vl~~G~C~~c~ 559 (796)
+ .|... .| ..|..-.+.|....|. .++..|++ +.|-+|.+..|+-..|..-+- .++.--.|..-.
T Consensus 748 k--NPk~~~lwle~Ir~ElR~gn~~~a~------~lmakALQecp~sg~LWaEaI~le~~~~rkTk-s~DALkkce~dp 817 (913)
T KOG0495|consen 748 K--NPKNALLWLESIRMELRAGNKEQAE------LLMAKALQECPSSGLLWAEAIWLEPRPQRKTK-SIDALKKCEHDP 817 (913)
T ss_pred c--CCCcchhHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCccchhHHHHHHhccCcccchH-HHHHHHhccCCc
Confidence 6 44444 34 3376666666554444 23334443 567888888888777776554 333333454433
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.21 E-value=0.71 Score=48.19 Aligned_cols=136 Identities=15% Similarity=0.154 Sum_probs=99.0
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH----c
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----N 435 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~----~ 435 (796)
.-|++.|++++|++..+. |-.......| +..+.+..++|.|.+.++.|.+- -+-.|.+-|-.++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~----~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHL----GENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhc----cchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 357899999999998876 2222333333 33455777899999999999865 345566655555554 4
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhH-HHHHHHHHhchH
Q 003768 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST-ADVIAKWFNSKE 506 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t-~~~I~~~~~~~~ 506 (796)
+.+..|+-+|++|-++ ..|+..+.+-+..++...|++++|..++++...+.-.. |+| .+.|....-.|+
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d-petL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD-PETLANLIVLALHLGK 256 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhCC
Confidence 6799999999999873 45999999999999999999999999999998873332 443 455555444443
No 118
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.17 E-value=0.36 Score=45.22 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=48.8
Q ss_pred CCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC
Q 003768 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGK 472 (796)
Q Consensus 416 ~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~-gv~pd~~ty~~LI~~~~~~G~ 472 (796)
..+.|+..+..+++.+|+.+|++..|.++.+...+. ++..+...|..|+.=+...-+
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 357799999999999999999999999999988765 888889999999987755444
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=94.17 E-value=6.9 Score=48.36 Aligned_cols=218 Identities=14% Similarity=0.058 Sum_probs=133.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCc
Q 003768 188 RSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNS 266 (796)
Q Consensus 188 ~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~-Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s 266 (796)
..+...|-.||..+-..+++++|.++.+...+. .-.+..+-|..+|..-. ++..++..+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~------------~~~~~~~lv-------- 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSR------------RPLNDSNLL-------- 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhh------------cchhhhhhh--------
Confidence 345578999999999999999999999966643 22233344444422222 222222222
Q ss_pred hhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccc
Q 003768 267 TELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKD 346 (796)
Q Consensus 267 ~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~ 346 (796)
.++.. +....++..+.-+...|...|- + ..|+
T Consensus 88 ----------------~~l~~------~~~~~~~~~ve~~~~~i~~~~~--~---------k~Al--------------- 119 (906)
T PRK14720 88 ----------------NLIDS------FSQNLKWAIVEHICDKILLYGE--N---------KLAL--------------- 119 (906)
T ss_pred ----------------hhhhh------cccccchhHHHHHHHHHHhhhh--h---------hHHH---------------
Confidence 12222 3344444333444444444321 0 0011
Q ss_pred cccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHH
Q 003768 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (796)
Q Consensus 347 ~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~ 426 (796)
-.+-.+|-+.|+.++|..+++++.+.. +-|..+.|.+...|+.. ++++|.+++......-+ +..-|+
T Consensus 120 ---------~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~ 186 (906)
T PRK14720 120 ---------RTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYV 186 (906)
T ss_pred ---------HHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcch
Confidence 456778889999999999999999877 66888999999999999 99999999988765511 222233
Q ss_pred HHHH---HHHHc--CChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 427 PALS---VFCNN--GDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 427 ~LI~---~~~~~--G~~~~A~~l~~~M~~~-gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+.. -+|.. .+++.=..+.+.+..+ |..--+.++-.|-..|-...+++++..+|..+.+.
T Consensus 187 ~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 187 GIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 2222 12211 2333333333333333 44444556666667788888999999999999887
No 120
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.16 E-value=1.2 Score=47.97 Aligned_cols=98 Identities=9% Similarity=0.052 Sum_probs=71.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH-HHHHHcC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNG 436 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI-~~~~~~G 436 (796)
+-.+++-.|...+|.++|-......++-+..-.+.|.++|.+++.++.|++++-.|. -..+..+.--+| +-|-+++
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~ 475 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKAN 475 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHH
Confidence 557888899999999999877665554444444667789999999999999886553 333444444455 4667889
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHH
Q 003768 437 DVDKACSVEEHMLEHGVYPEEPEL 460 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty 460 (796)
.+--|-+.|+++.... |+..-|
T Consensus 476 eFyyaaKAFd~lE~lD--P~pEnW 497 (557)
T KOG3785|consen 476 EFYYAAKAFDELEILD--PTPENW 497 (557)
T ss_pred HHHHHHHhhhHHHccC--CCcccc
Confidence 9888888998888754 666555
No 121
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=3.3 Score=47.48 Aligned_cols=47 Identities=4% Similarity=-0.130 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003768 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (796)
Q Consensus 190 d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~ 237 (796)
++...-.--+-|-..+++.+.+++++...+. .+++...+..-|.++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~ 289 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLY 289 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHH
Confidence 3355555566677789999999999998753 2444455556666665
No 122
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=11 Score=42.57 Aligned_cols=127 Identities=11% Similarity=0.007 Sum_probs=108.1
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
.++-+.|.-.++.++|...|+.-.+-+ +-....||.|=.-|....+...|.+-++...+. .+-|-+.|-.|=.+|.-.
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim 411 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIM 411 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHh
Confidence 556677888889999999999888764 335678999999999999999999999988766 345788888899999999
Q ss_pred CChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 436 GDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+...=|+-.|++... +.| |...|.+|=+.|.+.++.++|.+-|..-..-
T Consensus 412 ~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 412 KMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred cchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 999888888888766 345 7889999999999999999999999987765
No 123
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=94.07 E-value=0.88 Score=40.89 Aligned_cols=95 Identities=9% Similarity=-0.033 Sum_probs=74.7
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----cccHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPAL 429 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi--~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd----~~ty~~LI 429 (796)
-.+...+.+.|++++|.+.|+.+....- ......+..+...+.+.|++++|...|+.+.... |+ ...+..+-
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHHHH
Confidence 3455667889999999999999987531 1123466778999999999999999999987642 33 34566677
Q ss_pred HHHHHcCChHHHHHHHHHHHhCC
Q 003768 430 SVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 430 ~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
..+.+.|+.++|...++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 78889999999999999998874
No 124
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.01 E-value=0.75 Score=51.18 Aligned_cols=102 Identities=14% Similarity=0.166 Sum_probs=75.0
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCCh
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDV 438 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~ 438 (796)
..+...|++++|.++|++..... +-+...|..+..+|.+.|++++|+..+++.... .| +...|..+-.+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCH
Confidence 34456788899999998888754 346677888888888889999999888887765 33 455666667778888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003768 439 DKACSVEEHMLEHGVYPEEPELEALLRV 466 (796)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~LI~~ 466 (796)
++|...|+...+.. |+......++.-
T Consensus 87 ~eA~~~~~~al~l~--P~~~~~~~~l~~ 112 (356)
T PLN03088 87 QTAKAALEKGASLA--PGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 88888888887743 665555555433
No 125
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.87 E-value=0.59 Score=49.94 Aligned_cols=154 Identities=8% Similarity=-0.050 Sum_probs=116.1
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
|-+.|.+.+|.+.|+.-.+.--.||. | -.|-..|.+..+.+.|+.
T Consensus 233 ylrLgm~r~AekqlqssL~q~~~~dT--f---------------------------------llLskvY~ridQP~~AL~ 277 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQFPHPDT--F---------------------------------LLLSKVYQRIDQPERALL 277 (478)
T ss_pred HHHhcChhhhHHHHHHHhhcCCchhH--H---------------------------------HHHHHHHHHhccHHHHHH
Confidence 88888888998888776665433333 3 447788899999999999
Q ss_pred HHHHHHhCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003768 374 IYEKMCLDEVPMNEASL-TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty-~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
+|.+-.+. -|-.+|| .-+.+.+-..++.++|.+++++..+.. .-++....++-.+|.-.++.+.|+..+..+...|
T Consensus 278 ~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG 354 (478)
T KOG1129|consen 278 VIGEGLDS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG 354 (478)
T ss_pred HHhhhhhc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc
Confidence 99887664 3544544 667888888999999999999887652 2456666667777888899999999999999988
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 453 VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 453 v~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+. +...|+.+--+|.-.+++|-++--|.+-...
T Consensus 355 ~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 355 AQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred CC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 64 5556666666666778888888777776654
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.78 E-value=1.6 Score=52.69 Aligned_cols=126 Identities=10% Similarity=-0.025 Sum_probs=99.7
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH-HHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCN 434 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI-~~~~~ 434 (796)
-.|-....+.|..++|..+++...+.. +-+......+...+.+.+++++|....++.... .|+..+.-.+. .++.+
T Consensus 90 ~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~ 166 (694)
T PRK15179 90 VLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDE 166 (694)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHH
Confidence 445566677889999999999988752 334667788999999999999999999988765 46665554444 56667
Q ss_pred cCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 435 NGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~pd-~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|+.++|.++|++....+ |+ ...+..+=..+-..|+.++|...|+.-.+.
T Consensus 167 ~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 167 IGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred hcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 899999999999999844 44 677888888888999999999999987654
No 127
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.54 E-value=5 Score=50.32 Aligned_cols=272 Identities=8% Similarity=-0.015 Sum_probs=156.3
Q ss_pred hhcCCcchHHHHHHHHHhcCCCCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-CC--HHHHHHHHH
Q 003768 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGI--K-LG--QYHYNVLLY 234 (796)
Q Consensus 161 ~k~~~~~~A~~vf~~M~~~g~~~~~g~~P-d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi--~-pd--~~tyn~LL~ 234 (796)
...++.++|...+++....- +.. ..+ -...++.+-..+...|++++|...+.+.....- . +. ..+++.+-.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 463 INDGDPEEAERLAELALAEL--PLT-WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcC--CCc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 35678888999888864321 111 011 113455566677889999999999999874211 1 11 122333333
Q ss_pred HHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCC----cchhhhcccCccccccccccCChHHHHHHHHHH
Q 003768 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN----NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (796)
Q Consensus 235 a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d----~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (796)
.+. ..|++++|...+.-. .+.....+..+ ...+..+-.. +...|++++|...+.+.
T Consensus 540 ~~~----------~~G~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~a 599 (903)
T PRK04841 540 ILF----------AQGFLQAAYETQEKA----FQLIEEQHLEQLPMHEFLLRIRAQL------LWEWARLDEAEQCARKG 599 (903)
T ss_pred HHH----------HCCCHHHHHHHHHHH----HHHHHHhccccccHHHHHHHHHHHH------HHHhcCHHHHHHHHHHh
Confidence 334 579999998887410 11111112111 1223333333 56679999999888876
Q ss_pred HHcC--CCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhC----CCC
Q 003768 311 ENLG--QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVP 384 (796)
Q Consensus 311 ~~~G--i~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~----gi~ 384 (796)
.... ..|... +. .+ ..+-..+...|+.++|.+.+++.... +..
T Consensus 600 l~~~~~~~~~~~---------~~-----------~~-----------~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~ 648 (903)
T PRK04841 600 LEVLSNYQPQQQ---------LQ-----------CL-----------AMLAKISLARGDLDNARRYLNRLENLLGNGRYH 648 (903)
T ss_pred HHhhhccCchHH---------HH-----------HH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 5431 111100 00 01 33445667789999999998887542 111
Q ss_pred CCHHH-H-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc---ccHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC
Q 003768 385 MNEAS-L-TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL---RSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP 455 (796)
Q Consensus 385 pd~~t-y-~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~---~ty~~LI~~~~~~G~~~~A~~l~~~M~~~----gv~p 455 (796)
..... . ...+..+...|+.+.|...+............ ..+..+-..+...|+.++|..+++..... |..+
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~ 728 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS 728 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence 11101 1 11234455689999999998765432111110 01234556677889999999999887653 4333
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 456 E-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 456 d-~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+ ..++..+-.++.+.|+.++|...|.+..+.
T Consensus 729 ~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 729 DLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 234555666778999999999999988765
No 128
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=93.53 E-value=1.2 Score=45.16 Aligned_cols=107 Identities=11% Similarity=0.077 Sum_probs=83.5
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA-MSMGD--GDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~-~~~g~--~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~ 432 (796)
..+-..|...|++++|...|+...... +-|...+..+..++ ...|+ .++|.+++++..+..- -+...+..+-..+
T Consensus 77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~ 154 (198)
T PRK10370 77 ALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDA 154 (198)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHH
Confidence 667778889999999999999888764 34777888888864 67777 5999999999887632 2567777788889
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003768 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (796)
Q Consensus 433 ~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~ 466 (796)
...|++++|...|+.+.+.. .|+..-+ .+|..
T Consensus 155 ~~~g~~~~Ai~~~~~aL~l~-~~~~~r~-~~i~~ 186 (198)
T PRK10370 155 FMQADYAQAIELWQKVLDLN-SPRVNRT-QLVES 186 (198)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCccHH-HHHHH
Confidence 99999999999999998754 3454443 34444
No 129
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.52 E-value=8 Score=45.18 Aligned_cols=296 Identities=14% Similarity=0.090 Sum_probs=167.5
Q ss_pred cCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccC
Q 003768 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (796)
Q Consensus 163 ~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~ 242 (796)
.++..+-..++.+.+..--.+...-+|. ..|..+-..|-.+|+++.|..+|+...+-..+- +.....+=-.|+....
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~-~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~-v~dLa~vw~~waemEl- 436 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKAVGSPG-TLWVEFAKLYENNGDLDDARVIFEKATKVPYKT-VEDLAEVWCAWAEMEL- 436 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccCCCChh-hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc-hHHHHHHHHHHHHHHH-
Confidence 4556666777777655322222223444 678888889999999999999999988765442 2223333333443322
Q ss_pred CcccCCCCChhhHHHHHhhhccCchhhhccC------CCCCc--------chhhhcccCccccccccccCChHHHHHHHH
Q 003768 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSR------DMDNN--------GQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308 (796)
Q Consensus 243 ~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~------gv~d~--------~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~ 308 (796)
+..+++.|..+..-- ..+.... |-.++ ..|.-.++- --..|-++....+++
T Consensus 437 -----rh~~~~~Al~lm~~A----~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl------eEs~gtfestk~vYd 501 (835)
T KOG2047|consen 437 -----RHENFEAALKLMRRA----THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL------EESLGTFESTKAVYD 501 (835)
T ss_pred -----hhhhHHHHHHHHHhh----hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH------HHHhccHHHHHHHHH
Confidence 455666676665300 0011110 00111 113333333 334567788888888
Q ss_pred HHHHcCCCCCcceec-------cchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHh-cc--CHHHHHHHHHHH
Q 003768 309 EKENLGQFSNGHMKL-------NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK-KY--AFQRGFEIYEKM 378 (796)
Q Consensus 309 eM~~~Gi~Pd~~ty~-------~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k-~g--~~~~A~~lf~~M 378 (796)
.|.+..+..-.+..| +.-++++++.+++.. ..+ .|.++.+.. |+-+.-+.+ -| .+++|..+|++.
T Consensus 502 riidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI---~LF-k~p~v~diW-~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 502 RIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGI---SLF-KWPNVYDIW-NTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCC---ccC-CCccHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 888877654444444 556777777777751 001 111111111 444333333 23 689999999999
Q ss_pred HhCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 003768 379 CLDEVPMNEASLTAVGRMA--MSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454 (796)
Q Consensus 379 ~~~gi~pd~~ty~~LI~~~--~~~g~~~~A~~l~~~M~~~gi~Pd--~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~ 454 (796)
.+ |++|.-.-+--|+-+- -+.|....|..++++.. .++.+. ...||..|.--+..--+....++|++.++. -
T Consensus 577 L~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat-~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--L 652 (835)
T KOG2047|consen 577 LD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT-SAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--L 652 (835)
T ss_pred Hh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--C
Confidence 88 7776544332222221 13578888899988843 334443 456777776555544455666777766664 4
Q ss_pred CCHHHHHHHHHHH---HhcCChhHHHHHHHHHHh
Q 003768 455 PEEPELEALLRVS---VEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 455 pd~~ty~~LI~~~---~~~G~~~~A~~ll~~M~~ 485 (796)
||...=..-|+.. ++.|..|+|..++..-.+
T Consensus 653 p~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 6655544444332 677888888877766544
No 130
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.44 E-value=1.6 Score=51.74 Aligned_cols=237 Identities=16% Similarity=0.116 Sum_probs=132.0
Q ss_pred hhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCC--------CC-HHHHH
Q 003768 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQR-EGIK--------LG-QYHYN 230 (796)
Q Consensus 161 ~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~-~Gi~--------pd-~~tyn 230 (796)
...|+.+.|.+-..-+ +.. +.|..|-+.|.+..+++-|.-.+-.|.. .|.+ |+ ...=.
T Consensus 739 vtiG~MD~AfksI~~I------kS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakv 806 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFI------KSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKV 806 (1416)
T ss_pred EEeccHHHHHHHHHHH------hhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHH
Confidence 3456777787777777 333 8999999999999999999988888873 2322 11 11111
Q ss_pred HHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHH
Q 003768 231 VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (796)
Q Consensus 231 ~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (796)
++|.. ..|.+++|..++. .=.+ |..|-+- |-..|.+++|.++-+.-
T Consensus 807 AvLAi------------eLgMlEeA~~lYr-------~ckR---------~DLlNKl------yQs~g~w~eA~eiAE~~ 852 (1416)
T KOG3617|consen 807 AVLAI------------ELGMLEEALILYR-------QCKR---------YDLLNKL------YQSQGMWSEAFEIAETK 852 (1416)
T ss_pred HHHHH------------HHhhHHHHHHHHH-------HHHH---------HHHHHHH------HHhcccHHHHHHHHhhc
Confidence 11111 4577888888873 1111 2333333 66678888888776543
Q ss_pred HHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCC--------
Q 003768 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE-------- 382 (796)
Q Consensus 311 ~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~g-------- 382 (796)
.+--++-.-+-|. + ..+| ..+....|..|-|.|. -|+++|+.+.+.-
T Consensus 853 DRiHLr~Tyy~yA-~-~Lea---------------------r~Di~~AleyyEK~~~--hafev~rmL~e~p~~~e~Yv~ 907 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYA-K-YLEA---------------------RRDIEAALEYYEKAGV--HAFEVFRMLKEYPKQIEQYVR 907 (1416)
T ss_pred cceehhhhHHHHH-H-HHHh---------------------hccHHHHHHHHHhcCC--hHHHHHHHHHhChHHHHHHHH
Confidence 3322222222221 0 0000 1112334444555554 2555555554321
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003768 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462 (796)
Q Consensus 383 i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~ 462 (796)
-.-|...|.-.-.-+-..|+.|.|+.++...+. |-+++...|-.|++++|-++-++- -|....--
T Consensus 908 ~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYh 972 (1416)
T KOG3617|consen 908 RKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYH 972 (1416)
T ss_pred hccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHH
Confidence 123444444444444567888888888876543 345666667777777777766553 23344444
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 003768 463 LLRVSVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 463 LI~~~~~~G~~~~A~~ll~~M 483 (796)
|-+.|-..|++.+|..+|.+-
T Consensus 973 laR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 973 LARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHhhhhHHHHHHHHHHHHH
Confidence 556666666666666666553
No 131
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.43 E-value=3.8 Score=49.93 Aligned_cols=180 Identities=12% Similarity=0.053 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHH
Q 003768 227 YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (796)
Q Consensus 227 ~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~l 306 (796)
..|+.|-.|-. ..|.+.+|.+-|- ...|...|--+|+. ..+.|.+++-.+.
T Consensus 1105 ~vWsqlakAQL----------~~~~v~dAieSyi-------------kadDps~y~eVi~~------a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1105 AVWSQLAKAQL----------QGGLVKDAIESYI-------------KADDPSNYLEVIDV------ASRTGKYEDLVKY 1155 (1666)
T ss_pred HHHHHHHHHHH----------hcCchHHHHHHHH-------------hcCCcHHHHHHHHH------HHhcCcHHHHHHH
Confidence 45555555555 5667777777662 11255568888888 8888888888887
Q ss_pred HHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCC
Q 003768 307 FNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN 386 (796)
Q Consensus 307 f~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd 386 (796)
+..-+.+.-+|.+- +.+|-+|++.+++.+-.++. ..||
T Consensus 1156 L~MaRkk~~E~~id-----------------------------------~eLi~AyAkt~rl~elE~fi-------~gpN 1193 (1666)
T KOG0985|consen 1156 LLMARKKVREPYID-----------------------------------SELIFAYAKTNRLTELEEFI-------AGPN 1193 (1666)
T ss_pred HHHHHHhhcCccch-----------------------------------HHHHHHHHHhchHHHHHHHh-------cCCC
Confidence 76555555555543 45777777777766554443 1355
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC--------------------CCCCCcccHHHHHHHHHHcCChHHHHHHHH
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSL--------------------GINPRLRSYGPALSVFCNNGDVDKACSVEE 446 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~--------------------gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~ 446 (796)
..-.-.+=+-|...|.++.|.-++.....- .-.-+..||--+-.+|...+.+..|
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA----- 1268 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA----- 1268 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----
Confidence 555555555555555555555444322100 0112455666555555555554433
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003768 447 HMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (796)
Q Consensus 447 ~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~ 482 (796)
.|-...+........-||..|-..|.+++...+++.
T Consensus 1269 QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1269 QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 333334445666777888888888888887777654
No 132
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.26 E-value=11 Score=43.65 Aligned_cols=136 Identities=13% Similarity=0.190 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--------HHHHCCCCCCcccHHHHHHHHHHcCCh
Q 003768 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVK--------RMKSLGINPRLRSYGPALSVFCNNGDV 438 (796)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~--------~M~~~gi~Pd~~ty~~LI~~~~~~G~~ 438 (796)
....|.+++...-+..-.-..++--+++......|+++.|.+++. .+.+.+..|-++.+ ++..+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~a--iv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGA--IVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHH--HHHHHHhccCC
Confidence 456677777666654322234555667777888999999999999 66677777766554 66777888888
Q ss_pred HHHHHHHHHHHhC--CCCCCHHHHHHHHHHH----HhcCChhHHHHHHHHHHhCCCCCChhH-HHHHHHHHhch
Q 003768 439 DKACSVEEHMLEH--GVYPEEPELEALLRVS----VEAGKGDRVYYLLHKLRTSVRKVSPST-ADVIAKWFNSK 505 (796)
Q Consensus 439 ~~A~~l~~~M~~~--gv~pd~~ty~~LI~~~----~~~G~~~~A~~ll~~M~~~~~~~~p~t-~~~I~~~~~~~ 505 (796)
+.|-.++.+-... .-.+.......++.-. .+.|..++|..+++++.... +.+.++ ...+.++++-.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD 506 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence 8888888776542 1123333444444333 57899999999999999841 222223 33366666543
No 133
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=93.19 E-value=0.24 Score=40.28 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=8.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 003768 428 ALSVFCNNGDVDKACSVEEHML 449 (796)
Q Consensus 428 LI~~~~~~G~~~~A~~l~~~M~ 449 (796)
+..+|.+.|++++|.++++.+.
T Consensus 31 la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 31 LAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHHHHHHTT-HHHHHHHHHCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333444444444443333
No 134
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=92.96 E-value=1.6 Score=51.41 Aligned_cols=197 Identities=13% Similarity=0.049 Sum_probs=141.4
Q ss_pred CCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceec----
Q 003768 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL---- 323 (796)
Q Consensus 248 k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~---- 323 (796)
+.|-...|..+|.- ...|.-+|-+ |+..|+..+|..+...-.+ -.||..-|.
T Consensus 410 slGitksAl~I~Er----------------lemw~~vi~C------Y~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 410 SLGITKSALVIFER----------------LEMWDPVILC------YLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred HcchHHHHHHHHHh----------------HHHHHHHHHH------HHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 78888899999851 1235667778 9999999999988887777 357887777
Q ss_pred ----cchhhhHHhhhhcC-CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003768 324 ----NSQLLDGRSNLERG-PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (796)
Q Consensus 324 ----~g~~~~A~~l~~~m-~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~ 398 (796)
..-.++|.++++.. ..--..+ + .-..+.++++++.+.|+.-..-. +.-..+|=.+=-++-
T Consensus 466 v~~d~s~yEkawElsn~~sarA~r~~-----------~---~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~AL 530 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARAQRSL-----------A---LLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAAL 530 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHHHHhh-----------c---cccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHH
Confidence 45566777765543 0000000 0 01123578888988887544322 223446655555666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003768 399 SMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY 477 (796)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~ 477 (796)
+.+++..|.+.|...... .|| ...||.+=.+|.+.|+-.+|+..+.+-.+.. .-+...|..-+-...+.|.+++|+
T Consensus 531 qlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHH
Confidence 789999999999876543 565 5689999999999999999999999999887 556667777777789999999999
Q ss_pred HHHHHHHhC
Q 003768 478 YLLHKLRTS 486 (796)
Q Consensus 478 ~ll~~M~~~ 486 (796)
+.+++|...
T Consensus 608 ~A~~rll~~ 616 (777)
T KOG1128|consen 608 KAYHRLLDL 616 (777)
T ss_pred HHHHHHHHh
Confidence 998887553
No 135
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.72 E-value=7.3 Score=45.04 Aligned_cols=117 Identities=15% Similarity=0.197 Sum_probs=85.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHH--HHHHHH--
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP--ALSVFC-- 433 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~--LI~~~~-- 433 (796)
=|+-+.+.|.+++|......+...+ +-|...+-+=+-+..+.+.+++|+.+.+. .+ -..+++. +=.+||
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHH
Confidence 3567788899999999999998776 55677777778888999999999966653 21 1122232 245666
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 434 NNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~gv~pd~~-ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+.+..++|...++ |..++.. +...=-..+-+.|++++|+++++.+.++
T Consensus 91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 6789999998887 3334333 4444446678899999999999999776
No 136
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=92.54 E-value=3 Score=50.50 Aligned_cols=133 Identities=13% Similarity=0.067 Sum_probs=101.0
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
..+.|+.++|..+++...+. .||.... .-.+...+.+.+++++|+.
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~--~Pd~~~a--------------------------------~~~~a~~L~~~~~~eeA~~ 141 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQR--FPDSSEA--------------------------------FILMLRGVKRQQGIEAGRA 141 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhh--CCCcHHH--------------------------------HHHHHHHHHHhccHHHHHH
Confidence 56778889999988877665 3554433 1556778899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003768 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
..++..... +-+......+-.++.+.|+.++|..+|++.... .|+ ...+..+=..+-..|+.++|...|+...+.-
T Consensus 142 ~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 142 EIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 999988764 345667788888899999999999999999873 233 5677777778888999999999999887641
Q ss_pred CCCCHHHHHHHH
Q 003768 453 VYPEEPELEALL 464 (796)
Q Consensus 453 v~pd~~ty~~LI 464 (796)
.|...-|+.++
T Consensus 219 -~~~~~~~~~~~ 229 (694)
T PRK15179 219 -GDGARKLTRRL 229 (694)
T ss_pred -CcchHHHHHHH
Confidence 24445555443
No 137
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=92.48 E-value=8.1 Score=42.30 Aligned_cols=104 Identities=9% Similarity=-0.040 Sum_probs=64.2
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G 436 (796)
-.|.-+...|+...|.++..+.+ .||..-|-..|++++..++|++-.++-.. .- ..+-|-+.+.+|.+.|
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCC
Confidence 33555566666666666654442 46777777777777777777765554322 12 2366777777777777
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003768 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll 480 (796)
+..+|..+...+ ++..-+..|.++|++.+|.+.-
T Consensus 252 ~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 252 NKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 777777666551 2245556667777777765543
No 138
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.43 E-value=7.2 Score=45.41 Aligned_cols=87 Identities=15% Similarity=0.194 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH----------
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP---------- 458 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~---------- 458 (796)
+.-.+..-+-+...+..|-++|..|-.. ..++......+++.+|+.+-+...+ +.||+.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhh
Confidence 3344444444566677888888877543 3467777888899999888777654 234332
Q ss_pred -HHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 459 -ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 459 -ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
-|.---++|-++|+..+|.++++.+..+
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2444456778888888888888888766
No 139
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=92.41 E-value=3 Score=40.97 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=32.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--~~ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (796)
+-..+...|++++|...|++.....-.+. ...+..+...+.+.|+.++|...+.+...
T Consensus 41 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 41 DGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33445556666666666666654332221 24556666666666666666666665554
No 140
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=92.40 E-value=3.6 Score=40.42 Aligned_cols=111 Identities=17% Similarity=0.179 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHH
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEA 462 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd--~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~ 462 (796)
....|..+...+...|++++|...|++..+..-.+. ...|..+-..+.+.|+.++|...+.+..+.. | +...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHH
Confidence 345678888889999999999999999876543332 3567778888999999999999999888743 4 3445556
Q ss_pred HHHHHHhcCC--------------hhHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 003768 463 LLRVSVEAGK--------------GDRVYYLLHKLRTSVRKVSPSTADVIAKWF 502 (796)
Q Consensus 463 LI~~~~~~G~--------------~~~A~~ll~~M~~~~~~~~p~t~~~I~~~~ 502 (796)
+-..+...|+ +++|.+++.+.... .|+.+..+..|.
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~ 161 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL----APNNYIEAQNWL 161 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh----CchhHHHHHHHH
Confidence 6666666665 34555555555443 344444444443
No 141
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.33 E-value=5.3 Score=48.72 Aligned_cols=251 Identities=10% Similarity=0.036 Sum_probs=153.3
Q ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccccCCcccC
Q 003768 170 YKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE--GIKLGQYHYNVLLYLCSSAAVGVVKPA 247 (796)
Q Consensus 170 ~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~--Gi~pd~~tyn~LL~a~~~~~~~~~~~~ 247 (796)
+.+.+..++.++.... .| ..-+..+.++.-++-+.+-+++++...-. -+.-+.-.-|.||-.-.+++
T Consensus 967 RqLiDqVv~tal~E~~--dP--e~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad------- 1035 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQ--DP--EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD------- 1035 (1666)
T ss_pred HHHHHHHHHhcCCccC--Ch--HHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC-------
Confidence 4566666666654433 23 34456678888899999999999988732 23333444455554444222
Q ss_pred CCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchh
Q 003768 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (796)
Q Consensus 248 k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~ 327 (796)
-.+..+... -.+..+.++. -+. ...++.+++|..+|+.-.-.+-.-++..-+-+.+
T Consensus 1036 ----~trVm~YI~--------rLdnyDa~~i--a~i----------ai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~l 1091 (1666)
T KOG0985|consen 1036 ----RTRVMEYIN--------RLDNYDAPDI--AEI----------AIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSL 1091 (1666)
T ss_pred ----hHHHHHHHH--------HhccCCchhH--HHH----------HhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhH
Confidence 112222221 0011111111 111 3445667888888775432211111111114556
Q ss_pred hhHHhhhhcC-CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003768 328 LDGRSNLERG-PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMA 406 (796)
Q Consensus 328 ~~A~~l~~~m-~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A 406 (796)
+.|.++-++. +|. +| +-+-.+-.+.|.+.+|.+-|-+- -|...|.-+|+.+.+.|.+++-
T Consensus 1092 dRA~efAe~~n~p~--vW-----------sqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edL 1152 (1666)
T KOG0985|consen 1092 DRAYEFAERCNEPA--VW-----------SQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDL 1152 (1666)
T ss_pred HHHHHHHHhhCChH--HH-----------HHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHH
Confidence 6666655554 343 45 66778888888888888766542 3678899999999999999999
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003768 407 FDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 407 ~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M 483 (796)
...+...++..-.|.+. +.||-+|++.+++.+-.++.. | ||......+=+-|...|.++.|.-++...
T Consensus 1153 v~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-----g--pN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1153 VKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-----G--PNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-----C--CCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 88887777777777665 469999999999877665552 2 77777777777777777777776666544
No 142
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=92.30 E-value=0.15 Score=43.76 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=40.5
Q ss_pred cCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHHcCChHHHHH
Q 003768 366 YAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACS 443 (796)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~-pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~-~ty~~LI~~~~~~G~~~~A~~ 443 (796)
|+++.|..+|+++.+..-. ++...+-.+..+|.+.|+.++|..+++. .+. .|+. ...-.+-.+|.+.|+.++|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 5666677777766654321 1333334466667777777777777765 211 1221 111222344556666666666
Q ss_pred HHHH
Q 003768 444 VEEH 447 (796)
Q Consensus 444 l~~~ 447 (796)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6653
No 143
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=92.25 E-value=0.34 Score=39.41 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=50.6
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH
Q 003768 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (796)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI 429 (796)
.+.|++++|.++|+.+.... +-|...+-.+..+|.+.|++++|..+++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 46789999999999998764 337777888999999999999999999998765 46655555444
No 144
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=92.01 E-value=5.3 Score=46.78 Aligned_cols=138 Identities=9% Similarity=-0.018 Sum_probs=94.3
Q ss_pred hhHHHHHHhcc-----CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHC-CCCC
Q 003768 356 EIRLSEDAKKY-----AFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMG--------DGDMAFDMVKRMKSL-GINP 420 (796)
Q Consensus 356 n~lI~~~~k~g-----~~~~A~~lf~~M~~~gi~pd-~~ty~~LI~~~~~~g--------~~~~A~~l~~~M~~~-gi~P 420 (796)
...+.|..... ..++|.++|++..+. .|| ...|..+..++.... ++..+.+........ ....
T Consensus 341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~ 418 (517)
T PRK10153 341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV 418 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence 66776654422 378999999998876 355 345555444443321 123333333332222 1233
Q ss_pred CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 003768 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIA 499 (796)
Q Consensus 421 d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~I~ 499 (796)
+...|..+-..+...|+.++|...++...+.+ |+...|..+-..+...|+.++|.+.+.+-... .|...||-.++
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~~~~~ 493 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTLYWIE 493 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchHHHHH
Confidence 44677776555666899999999999999876 78999999999999999999999999988776 66666765443
No 145
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=91.99 E-value=8.4 Score=44.17 Aligned_cols=127 Identities=15% Similarity=0.127 Sum_probs=100.3
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH-HHHCCCCCCcccH-HHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKR-MKSLGINPRLRSY-GPALSVF 432 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~-M~~~gi~Pd~~ty-~~LI~~~ 432 (796)
-..|+.--|..-++.|..+|.+.++.+..+ .+.+++++|.-||. +|.+-|+++|+- |++. +|.-.| ..-|+.+
T Consensus 370 ~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf---~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 370 CQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF---GDSPEYVLKYLDFL 445 (656)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc---CCChHHHHHHHHHH
Confidence 556777777778889999999999888777 88889999988875 678889999975 3333 444444 4567778
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 433 CNNGDVDKACSVEEHMLEHGVYPEE--PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 433 ~~~G~~~~A~~l~~~M~~~gv~pd~--~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
...++-..|..+|+.....++.||. ..|..+|+.=+.-|++..+.++-+++...
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8889889999999999888666654 68999999999999999988888877654
No 146
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=91.94 E-value=3.9 Score=46.71 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHH
Q 003768 368 FQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVE 445 (796)
Q Consensus 368 ~~~A~~lf~~M~~~-gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~ 445 (796)
.+...++++++... .+.|+ .+|-.+|+.--+..-+..|..+|.+..+.+..+ +++.++++|..||. +|-+-|+.+|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 55666677766654 33444 678889999899999999999999999998888 89999999998885 6678999999
Q ss_pred HH-HHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh----HHHH
Q 003768 446 EH-MLEHGVYPEEPEL-EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS----TADV 497 (796)
Q Consensus 446 ~~-M~~~gv~pd~~ty-~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~----t~~~ 497 (796)
+- |+.. +|...| ..-++.+...++-..|..||++...+ ..+++ .|..
T Consensus 425 eLGLkkf---~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s--~l~~~ks~~Iw~r 477 (656)
T KOG1914|consen 425 ELGLKKF---GDSPEYVLKYLDFLSHLNDDNNARALFERVLTS--VLSADKSKEIWDR 477 (656)
T ss_pred HHHHHhc---CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc--cCChhhhHHHHHH
Confidence 85 4443 455555 57888899999999999999999988 55554 5655
No 147
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=91.77 E-value=0.69 Score=49.65 Aligned_cols=143 Identities=13% Similarity=0.079 Sum_probs=99.8
Q ss_pred hhhhcccCccccccccccCChHHHHHHHHHHHHcC-CCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhH
Q 003768 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIR 358 (796)
Q Consensus 280 tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~G-i~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~l 358 (796)
+|-.+|+. .-+.+.++.|..+|.+-.+.+ +..+++.. .++
T Consensus 3 v~i~~m~~------~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~---------------------------------~A~ 43 (280)
T PF05843_consen 3 VWIQYMRF------MRRTEGIEAARKVFKRARKDKRCTYHVYVA---------------------------------YAL 43 (280)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHCCCCS-THHHHH---------------------------------HHH
T ss_pred HHHHHHHH------HHHhCChHHHHHHHHHHHcCCCCCHHHHHH---------------------------------HHH
Confidence 35555555 666667899999998887543 22222222 445
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHH
Q 003768 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----RSYGPALSVFCN 434 (796)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~----~ty~~LI~~~~~ 434 (796)
|. |...++.+.|..||+...+. ..-+...|...|+-+.+.++.+.|..+|+..... + |.. ..|...|..=.+
T Consensus 44 ~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~ 119 (280)
T PF05843_consen 44 ME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESK 119 (280)
T ss_dssp HH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHH
T ss_pred HH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHH
Confidence 44 33356777899999998875 4567888999999999999999999999997755 3 443 489999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003768 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~ 467 (796)
.|+++.+..|.+.+.+. .|+...+..+++-|
T Consensus 120 ~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 120 YGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred cCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 99999999999999874 45544444444443
No 148
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=91.67 E-value=33 Score=40.34 Aligned_cols=59 Identities=19% Similarity=0.095 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE-LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 426 ~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~t-y~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
-.++..|-+.|+++.|.+..+.-..+- |+.+. |-+=-+.+..+|++++|..++++-++-
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdHT--PTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDHT--PTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhccC--chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 346667777788888888887776643 55443 333335567778888888888877765
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=91.65 E-value=0.29 Score=41.95 Aligned_cols=80 Identities=19% Similarity=0.228 Sum_probs=56.7
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHH
Q 003768 400 MGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVY 477 (796)
Q Consensus 400 ~g~~~~A~~l~~~M~~~gi-~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~-~ty~~LI~~~~~~G~~~~A~ 477 (796)
.|+++.|..+++++.+..- .|+...+-.+-.+|.+.|+.++|.++++. ...+ |.. ...-.+-.+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5789999999999987633 12334444478899999999999999988 3222 333 33334466678999999999
Q ss_pred HHHHH
Q 003768 478 YLLHK 482 (796)
Q Consensus 478 ~ll~~ 482 (796)
.+|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
No 150
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=91.42 E-value=0.92 Score=43.20 Aligned_cols=70 Identities=19% Similarity=0.272 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHh-----CCCCCCHHH
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPE 459 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~-----~gv~pd~~t 459 (796)
+...++..+...|++++|..+...+.... +-|...|..+|.+|...|+...|.++|+.+.. -|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44445555566666666666666665442 23555666666666666666666666655532 256565544
No 151
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=91.29 E-value=3 Score=46.39 Aligned_cols=99 Identities=13% Similarity=0.037 Sum_probs=78.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 003768 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGK 472 (796)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~ 472 (796)
...+...|++++|..+|.+..+..- -+...|..+-.+|.+.|++++|...++...+.. | +...|..+-.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCC
Confidence 3556678999999999999887522 245566667788899999999999999998854 5 56678888888999999
Q ss_pred hhHHHHHHHHHHhCCCCCChhHHHH
Q 003768 473 GDRVYYLLHKLRTSVRKVSPSTADV 497 (796)
Q Consensus 473 ~~~A~~ll~~M~~~~~~~~p~t~~~ 497 (796)
+++|...|++.... .+.......
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~ 108 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTK 108 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHH
Confidence 99999999998876 544443333
No 152
>PLN02789 farnesyltranstransferase
Probab=91.25 E-value=26 Score=38.37 Aligned_cols=209 Identities=11% Similarity=-0.003 Sum_probs=119.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccccCCcccCCCC-ChhhHHHHHhhhccCchhhhccCCCC
Q 003768 199 DMCSKRGDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMD 276 (796)
Q Consensus 199 ~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~-tyn~LL~a~~~~~~~~~~~~k~G-~~~~A~~vf~~~~~~s~em~~~~gv~ 276 (796)
..+...+..++|+.+++.++.. .|+-. .|+..=.++. +.| .+++++..++ ++... .-+
T Consensus 45 a~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~----------~L~~~l~eeL~~~~-------~~i~~-npk 104 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLE----------ALDADLEEELDFAE-------DVAED-NPK 104 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHH----------HcchhHHHHHHHHH-------HHHHH-CCc
Confidence 3345667888999999998864 33332 3332222233 334 4677777773 33322 222
Q ss_pred CcchhhhcccCccccccccccCC--hHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccc
Q 003768 277 NNGQLDYGSSPMIDKLESNSSYR--FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDA 354 (796)
Q Consensus 277 d~~tyn~LI~~~~~~~~~~~~g~--~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~ 354 (796)
+...|+---.. +.+.|. .+++..++++|.+.. . .|...|
T Consensus 105 nyqaW~~R~~~------l~~l~~~~~~~el~~~~kal~~d----p-------------------kNy~AW---------- 145 (320)
T PLN02789 105 NYQIWHHRRWL------AEKLGPDAANKELEFTRKILSLD----A-------------------KNYHAW---------- 145 (320)
T ss_pred chHHhHHHHHH------HHHcCchhhHHHHHHHHHHHHhC----c-------------------ccHHHH----------
Confidence 44445533222 222232 255666666665542 1 111122
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCh----HHHHHHHHHHHHCCCCCCcccHHH
Q 003768 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM---GDG----DMAFDMVKRMKSLGINPRLRSYGP 427 (796)
Q Consensus 355 ~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~---g~~----~~A~~l~~~M~~~gi~Pd~~ty~~ 427 (796)
+-.--.+.+.|.+++|++.++++.+.+ .-|..+|+-.--.+.+. |.. +++.+...++... -.-|...|+-
T Consensus 146 -~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-~P~N~SaW~Y 222 (320)
T PLN02789 146 -SHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-NPRNESPWRY 222 (320)
T ss_pred -HHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-CCCCcCHHHH
Confidence 333334455678999999999999876 34566777665555554 222 4566666555544 2235677777
Q ss_pred HHHHHHHc----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003768 428 ALSVFCNN----GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (796)
Q Consensus 428 LI~~~~~~----G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~ 470 (796)
+-..+... +...+|.+.+.+....+ ..+...+..|++.|+..
T Consensus 223 l~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 223 LRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence 77777663 34456888888766643 34667788899999863
No 153
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=91.15 E-value=0.64 Score=44.32 Aligned_cols=68 Identities=16% Similarity=0.264 Sum_probs=53.0
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCccc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS-----LGINPRLRS 424 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~-----~gi~Pd~~t 424 (796)
..++..+...|++++|.++...+.... +.|+..|-.+|++|...|+..+|.++|+.+.. .|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 557778889999999999999998865 66899999999999999999999999998853 499887654
No 154
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.95 E-value=0.58 Score=49.07 Aligned_cols=85 Identities=11% Similarity=-0.036 Sum_probs=68.0
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------------hHHHHHHHHHHHHCCCCCCcccHHHH
Q 003768 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD----------------GDMAFDMVKRMKSLGINPRLRSYGPA 428 (796)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~----------------~~~A~~l~~~M~~~gi~Pd~~ty~~L 428 (796)
.+.++-...-++.|++-|+.-|..+|+.||+.+-+..- -+-+.+++++|...|+.||-.+-..|
T Consensus 85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~l 164 (406)
T KOG3941|consen 85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDIL 164 (406)
T ss_pred cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHH
Confidence 35677778888999999999999999999998766432 23588999999999999999999999
Q ss_pred HHHHHHcCCh-HHHHHHHHHHH
Q 003768 429 LSVFCNNGDV-DKACSVEEHML 449 (796)
Q Consensus 429 I~~~~~~G~~-~~A~~l~~~M~ 449 (796)
|++|.+.+.. .+-..+.--|.
T Consensus 165 vn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 165 VNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHhccccccHHHHHHHHHhhh
Confidence 9999998853 33444444443
No 155
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=90.88 E-value=6 Score=44.76 Aligned_cols=116 Identities=12% Similarity=0.136 Sum_probs=57.5
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHHcCChHHHH
Q 003768 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKAC 442 (796)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~-~ty~~LI~~~~~~G~~~~A~ 442 (796)
..|..++|+..++.+... .+-|..-.....+.+.+.++..+|.+.++.+... .|+. ...-.+=.+|.+.|+..+|.
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 344555555555555443 1223444444455555556666666665555443 3442 11222334555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003768 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M 483 (796)
.+++...... +-|...|..|-.+|...|+..+|..-.-++
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 5555544332 234555555666666655555555444443
No 156
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.68 E-value=3.6 Score=45.98 Aligned_cols=136 Identities=15% Similarity=0.148 Sum_probs=109.0
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccH-HHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY-GPALSVFC 433 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~g-i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty-~~LI~~~~ 433 (796)
.+.|+.-.+..-++.|..+|-+.++.| +.+++..|+++|.-+|. |+..-|..+|+-=.. .-||.-.| +-.+..+.
T Consensus 401 C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 401 CVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--KFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--hCCCchHHHHHHHHHHH
Confidence 778888888889999999999999999 67999999999988875 788889999975222 23666555 34677788
Q ss_pred HcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH
Q 003768 434 NNGDVDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~gv~pd--~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~ 497 (796)
+.++-+.|..+|+.-+++ +.-+ ...|..||+-=...|++.-|+.+=++|... .|..++..+
T Consensus 478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~ev 540 (660)
T COG5107 478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEV 540 (660)
T ss_pred HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHH
Confidence 899999999999954432 1122 568999999999999999999999999988 777766555
No 157
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=90.64 E-value=1.5 Score=41.79 Aligned_cols=88 Identities=11% Similarity=0.116 Sum_probs=65.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~--~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
+-..+...|++++|...|+........|+. ...-.|...+...|++++|+..++....... ....+...=..|.+.
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHC
Confidence 446778899999999999999987633322 2444578888899999999999977443333 223444455688899
Q ss_pred CChHHHHHHHHH
Q 003768 436 GDVDKACSVEEH 447 (796)
Q Consensus 436 G~~~~A~~l~~~ 447 (796)
|+.++|...|+.
T Consensus 132 g~~~~A~~~y~~ 143 (145)
T PF09976_consen 132 GDYDEARAAYQK 143 (145)
T ss_pred CCHHHHHHHHHH
Confidence 999999999875
No 158
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.64 E-value=41 Score=39.60 Aligned_cols=26 Identities=12% Similarity=-0.051 Sum_probs=23.2
Q ss_pred hhhcccCccccccccccCChHHHHHHHHHHHH
Q 003768 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN 312 (796)
Q Consensus 281 yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~ 312 (796)
|++|-+- |.+.|+++.|..+|++-..
T Consensus 251 w~SLAdY------YIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 251 WCSLADY------YIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred HHHHHHH------HHHhhhhHHHHHHHHHHHH
Confidence 8999899 9999999999999988554
No 159
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=90.47 E-value=4.3 Score=39.67 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=27.9
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003768 359 LSEDAKKYAFQRGFEIYEKMCLDEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (796)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~p--d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (796)
...+...|++++|...|++.......+ ...+|..+-..+...|+.++|...++....
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 42 GMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444555555555555554332111 123455555555555555555555555443
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=90.02 E-value=12 Score=40.12 Aligned_cols=114 Identities=15% Similarity=0.195 Sum_probs=71.3
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCCCC--cccHHHHH
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM-GDGDMAFDMVKRMKSL----GINPR--LRSYGPAL 429 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~-g~~~~A~~l~~~M~~~----gi~Pd--~~ty~~LI 429 (796)
-.+..|.+.|++..|-+++.++ -..|-.. |++++|.+.|++-.+. | .+. ..++.-+.
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A 162 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAA 162 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHH
Confidence 3455667777777776655544 3455555 7888888887765432 2 111 33455677
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCC-----CCHHH--HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003768 430 SVFCNNGDVDKACSVEEHMLEHGVY-----PEEPE--LEALLRVSVEAGKGDRVYYLLHKLRTSV 487 (796)
Q Consensus 430 ~~~~~~G~~~~A~~l~~~M~~~gv~-----pd~~t--y~~LI~~~~~~G~~~~A~~ll~~M~~~~ 487 (796)
..+.+.|+.++|.++|++.....+. .+... +.++| ++...|+...|.+.|++.....
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHGTTS
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhC
Confidence 7889999999999999998865332 22322 24444 4455799999999999988663
No 161
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.63 E-value=42 Score=38.16 Aligned_cols=257 Identities=13% Similarity=0.104 Sum_probs=148.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhh
Q 003768 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ-------YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVS 262 (796)
Q Consensus 190 d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~-------~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~ 262 (796)
|-.+|=-.|..--..|+.+...++|+..+. +++|-. +.|-=+=++|-..- ...+.+++.+++.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEl-------e~ed~ertr~vyq-- 390 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEEL-------EAEDVERTRQVYQ-- 390 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHH-------HhhhHHHHHHHHH--
Confidence 336777777777888999999999999985 456632 22222222222111 2345555555552
Q ss_pred ccCchhhhccCCCC-CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCc
Q 003768 263 TMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQ 341 (796)
Q Consensus 263 ~~~s~em~~~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~ 341 (796)
...+ -++ ..+||.-+=-. +..--.+..++..|.+++..- .|. .|-.
T Consensus 391 -----~~l~--lIPHkkFtFaKiWlm--yA~feIRq~~l~~ARkiLG~A--IG~----------------------cPK~ 437 (677)
T KOG1915|consen 391 -----ACLD--LIPHKKFTFAKIWLM--YAQFEIRQLNLTGARKILGNA--IGK----------------------CPKD 437 (677)
T ss_pred -----HHHh--hcCcccchHHHHHHH--HHHHHHHHcccHHHHHHHHHH--hcc----------------------CCch
Confidence 1111 112 22332222111 000012233444444443321 233 3444
Q ss_pred ccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC
Q 003768 342 SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INP 420 (796)
Q Consensus 342 ~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g-i~P 420 (796)
.++ ..-|.--.+.+.+++...+++....-+ +-|..+|.-....=...|+.|.|..+|+-..+.. +.-
T Consensus 438 KlF-----------k~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldm 505 (677)
T KOG1915|consen 438 KLF-----------KGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDM 505 (677)
T ss_pred hHH-----------HHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccccc
Confidence 444 666777778889999999999998876 5578889888888888999999999999877652 112
Q ss_pred CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--Hh---cC-----------ChhHHHHHHHHHH
Q 003768 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS--VE---AG-----------KGDRVYYLLHKLR 484 (796)
Q Consensus 421 d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~--~~---~G-----------~~~~A~~ll~~M~ 484 (796)
-...|-+-|+.=...|..++|..+++.+.+.. +...+|-.+-..= .. .| ....|..+|++..
T Consensus 506 pellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 506 PELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 23445555665667899999999999998863 4444554433322 22 22 3446777777643
Q ss_pred hCCC--CCChhHHHHHHHHHh
Q 003768 485 TSVR--KVSPSTADVIAKWFN 503 (796)
Q Consensus 485 ~~~~--~~~p~t~~~I~~~~~ 503 (796)
..-. ++...-..++++|-.
T Consensus 584 ~~~k~~~~KeeR~~LLEaw~~ 604 (677)
T KOG1915|consen 584 TYLKESTPKEERLMLLEAWKN 604 (677)
T ss_pred HHHHhcCcHHHHHHHHHHHHH
Confidence 3211 333334455666643
No 162
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=89.35 E-value=7.9 Score=41.17 Aligned_cols=103 Identities=9% Similarity=-0.004 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCCHHHH
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----RSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPEL 460 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~----~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g--v~pd~~ty 460 (796)
...|..-+..+.+.|++++|...|+.+.+. .|+. ..+--+-..|...|+.++|...|+.+.+.- -......+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 345666666666678888888888888765 3443 244446677788889999999888887642 01112333
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 003768 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (796)
Q Consensus 461 ~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~ 493 (796)
-.+...+...|+.++|..+|+.+.+. .|...
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 34455566889999999999988887 66554
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=89.19 E-value=5.3 Score=38.96 Aligned_cols=111 Identities=16% Similarity=0.058 Sum_probs=74.6
Q ss_pred HHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHHcCChHHHHHHHHH
Q 003768 371 GFEIYEKMC-LDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEH 447 (796)
Q Consensus 371 A~~lf~~M~-~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd--~~ty~~LI~~~~~~G~~~~A~~l~~~ 447 (796)
+...+..+. ..+..--...|..+...+...|++++|...|++.....-.|. ..+|..+=..+...|+.++|.+.++.
T Consensus 18 ~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 18 VADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred chhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444442 333222355677788888889999999999998876532221 24677777888999999999999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHH-------hcCChhHHHHHHHH
Q 003768 448 MLEHGVYPEEPELEALLRVSV-------EAGKGDRVYYLLHK 482 (796)
Q Consensus 448 M~~~gv~pd~~ty~~LI~~~~-------~~G~~~~A~~ll~~ 482 (796)
..... .....++..+...+. ..|+.++|...+++
T Consensus 98 Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 98 ALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 87642 123445666666666 67777766555543
No 164
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=88.95 E-value=11 Score=35.04 Aligned_cols=102 Identities=12% Similarity=0.078 Sum_probs=60.5
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---cccHH-HHHHHHHH
Q 003768 361 EDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR---LRSYG-PALSVFCN 434 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd--~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd---~~ty~-~LI~~~~~ 434 (796)
.+-..|+.++|..+|++-...|.... ...+-.+-..+-..|+.++|..+|++.... .|+ ..... .+--++..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHH
Confidence 34556778888888887777775543 234445566666778888888888776643 133 11111 11224556
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003768 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~ 468 (796)
.|+.++|.+.+-.... ++...|.--|..|+
T Consensus 88 ~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 88 LGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred CCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 6777777776655444 34445655555554
No 165
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=88.76 E-value=14 Score=34.74 Aligned_cols=110 Identities=8% Similarity=-0.021 Sum_probs=81.1
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+|..+.+.+.......+++.+...+ ..+...+|.+|..|++.. ..+..+.+.. .++.+....++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 678889988899999999999999887 478889999999999864 3444444442 24556666688888888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHH
Q 003768 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA-GKGDRVYYLLHK 482 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~-G~~~~A~~ll~~ 482 (796)
+..++|..++..+.. |...++.+... ++.+.|.+++.+
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 988888888877643 22233334444 778888887765
No 166
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=88.51 E-value=20 Score=43.54 Aligned_cols=69 Identities=12% Similarity=0.113 Sum_probs=49.4
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~ 237 (796)
+.+.++.++|..+++.....+ ++ |..|.-++-..|-..|+.++|..+|++... .-|+..-...++.+|.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~--~~-----D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~--~~P~eell~~lFmayv 121 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLK--GT-----DDLTLQFLQNVYRDLGKLDEAVHLYERANQ--KYPSEELLYHLFMAYV 121 (932)
T ss_pred HHHhcCchhHHHHHhhhccCC--CC-----chHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHHHH
Confidence 456677788888888773322 21 557888888888888888888888888764 3466666667777777
No 167
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.42 E-value=52 Score=37.63 Aligned_cols=142 Identities=7% Similarity=-0.051 Sum_probs=88.9
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHH
Q 003768 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443 (796)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~ 443 (796)
-.|+.-.|.+.|+......-.++. .|--+..+|....+.++.+..|++-...+- -|..+|..==..+.-.++++.|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHH
Confidence 367778888888887765433322 266677778888888888888887765532 244556555555556677888888
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhHHHH-HHHHHhchHHHHhc
Q 003768 444 VEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTADV-IAKWFNSKEAARLG 511 (796)
Q Consensus 444 l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~-p~t~~~-I~~~~~~~~~~~a~ 511 (796)
=|+.-++. .| ++..|.-+--+.-|.+.+++++..|++.+.+ .|+ |+.|+. -.-+-..+...+|.
T Consensus 416 DF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 416 DFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHH
Confidence 78777663 24 3344555555556777888888888888776 443 335554 33333344444443
No 168
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=88.06 E-value=9 Score=46.34 Aligned_cols=135 Identities=18% Similarity=0.163 Sum_probs=100.3
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCh
Q 003768 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM--SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~--~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~ 438 (796)
.....+++..|+.....+.++. || ..|..++.++. +.|+.++|..+++.....+.. |..|...+-..|-..|..
T Consensus 18 d~ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 3445678899999998877652 44 34555666654 789999999999988766554 889999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh--HHHHHHHHHh
Q 003768 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFN 503 (796)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~--t~~~I~~~~~ 503 (796)
++|..+|++.... .|+..-...+..+|.|.+.+.+-.+.=-+|-.. .|+.. .|++|.=.+.
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQ 156 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHH
Confidence 9999999998765 488888899999999999887655444444443 33333 4555444443
No 169
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=88.01 E-value=50 Score=39.98 Aligned_cols=158 Identities=11% Similarity=0.036 Sum_probs=88.4
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHH
Q 003768 296 SSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIY 375 (796)
Q Consensus 296 ~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf 375 (796)
..|.+|.|+.++..-+..=...-+..| .|++.+|-.+-++-..-...| .+-..|-..|++.+|..+|
T Consensus 924 S~GemdaAl~~Y~~A~D~fs~VrI~C~-qGk~~kAa~iA~esgd~AAcY------------hlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 924 SVGEMDAALSFYSSAKDYFSMVRIKCI-QGKTDKAARIAEESGDKAACY------------HLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred cccchHHHHHHHHHhhhhhhheeeEee-ccCchHHHHHHHhcccHHHHH------------HHHHHhhhhHHHHHHHHHH
Confidence 367888888888766554222222223 777777777766543333333 3556677777888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHH---------------HHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHH
Q 003768 376 EKMCLDEVPMNEASLTAVGRMAMSMGDGDM---------------AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (796)
Q Consensus 376 ~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~---------------A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~ 440 (796)
-..+ +|+.-|+.|-..+--|+ |-..|++ .|. -+...+--|-++|.+.+
T Consensus 991 TrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe---~g~-----~~~~AVmLYHkAGm~~k 1053 (1416)
T KOG3617|consen 991 TRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE---LGG-----YAHKAVMLYHKAGMIGK 1053 (1416)
T ss_pred HHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH---cch-----hhhHHHHHHHhhcchHH
Confidence 7643 56666665444332222 2222222 221 12334555778888888
Q ss_pred HHHHHH--------HHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003768 441 ACSVEE--------HMLEHGVY--PEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 441 A~~l~~--------~M~~~gv~--pd~~ty~~LI~~~~~~G~~~~A~~ll~~M 483 (796)
|+++-- +++...+. .|....+.--+.++...++++|..+|..-
T Consensus 1054 ALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1054 ALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 876521 22333333 35555666666666777777777666543
No 170
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.99 E-value=3.6 Score=44.53 Aligned_cols=157 Identities=13% Similarity=0.187 Sum_probs=100.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHH
Q 003768 299 RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM 378 (796)
Q Consensus 299 ~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M 378 (796)
.+++...+++.|.+.|+.-+.++| .-|..++.+- +. --......+|.++|+.|
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~-----laA~~i~~~~--~~--------------------~~~~~~~~ra~~iy~~m 129 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLY-----LAALIILEEE--EK--------------------EDYDEIIQRAKEIYKEM 129 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHH-----HHHHHHHHhc--cc--------------------ccHHHHHHHHHHHHHHH
Confidence 457778999999999999999888 2233222221 00 01223566899999999
Q ss_pred HhCC---CCCCHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHHcCC---hHHHHHHHHH
Q 003768 379 CLDE---VPMNEASLTAVGRMAMSMGD----GDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGD---VDKACSVEEH 447 (796)
Q Consensus 379 ~~~g---i~pd~~ty~~LI~~~~~~g~----~~~A~~l~~~M~~~gi~Pd~~-ty~~LI~~~~~~G~---~~~A~~l~~~ 447 (796)
++.. -.++-..+.+|+.. ...+ .+.++.+++.+.+.|+..+-. -+.+-|-+++.... +.++.++++.
T Consensus 130 Kk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 130 KKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred HHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 9864 24788888888766 3333 356788888888888766533 33344444444322 4567889999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCh-----hHHHHHHHHHHh
Q 003768 448 MLEHGVYPEEPELEALLRVSVEAGKG-----DRVYYLLHKLRT 485 (796)
Q Consensus 448 M~~~gv~pd~~ty~~LI~~~~~~G~~-----~~A~~ll~~M~~ 485 (796)
+.+.|+++....|..+ ..++-.+.. +...++.+.+.+
T Consensus 208 l~~~~~kik~~~yp~l-GlLall~~~~~~~~~~i~ev~~~L~~ 249 (297)
T PF13170_consen 208 LKKNGVKIKYMHYPTL-GLLALLEDPEEKIVEEIKEVIDELKE 249 (297)
T ss_pred HHHcCCccccccccHH-HHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 9999999888777644 344433332 334444445544
No 171
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.91 E-value=8.4 Score=40.36 Aligned_cols=135 Identities=11% Similarity=0.017 Sum_probs=102.5
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHH----
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV---- 431 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~---- 431 (796)
++++..+.-.|.+.-...++.+..+..-+.+.+..+.|.+.-.+.||.+.|...|+...+..-+.|..+++.++..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 6666766667778888889999999877888999999999999999999999999988776556677777766542
Q ss_pred -HHHcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH
Q 003768 432 -FCNNGDVDKACSVEEHMLEHGVYPEEPEL--EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495 (796)
Q Consensus 432 -~~~~G~~~~A~~l~~~M~~~gv~pd~~ty--~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~ 495 (796)
|.-.++...|...+.++....- -|++.- -+|+..| .|+..+|.+.+..|... .|.|.+-
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~--~P~~~l~ 322 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLY--LGKLKDALKQLEAMVQQ--DPRHYLH 322 (366)
T ss_pred heecccchHHHHHHHhhccccCC-CchhhhchHHHHHHH--HHHHHHHHHHHHHHhcc--CCccchh
Confidence 3345788888888888876531 122222 3565555 58899999999999988 6666643
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=87.62 E-value=2.3 Score=34.16 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=33.5
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003768 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (796)
.+.+.|++++|.++|++..+.. +-+.-.+..+-.++...|++++|..+|++..+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556666777777777766654 22455666666666667777777776666643
No 173
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=87.32 E-value=19 Score=37.64 Aligned_cols=124 Identities=16% Similarity=0.144 Sum_probs=92.3
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHH
Q 003768 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443 (796)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~ 443 (796)
-.|+-+.+..+....... -.-|......++....+.|++.+|...|.+.... -.+|...|+.+=-+|-+.|+++.|..
T Consensus 78 ~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ 155 (257)
T COG5010 78 LRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARR 155 (257)
T ss_pred hcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHH
Confidence 344444444444433221 2335556677999999999999999999997654 56899999999999999999999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 003768 444 VEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (796)
Q Consensus 444 l~~~M~~~gv~pd-~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~ 493 (796)
-|....+- .|+ ...+|.|--.|.-.|+.+.|..+|..-... +...+
T Consensus 156 ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~ 202 (257)
T COG5010 156 AYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADS 202 (257)
T ss_pred HHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCch
Confidence 99887763 343 345567777777889999999999998887 44343
No 174
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=86.72 E-value=42 Score=35.14 Aligned_cols=58 Identities=9% Similarity=0.059 Sum_probs=43.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 428 ALSVFCNNGDVDKACSVEEHMLEH--GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 428 LI~~~~~~G~~~~A~~l~~~M~~~--gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
+-.-|-+.|....|..=++.+.+. +........-.|+.+|.+.|..++|......+..
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 445577888888888888888875 4455666777888888888988888887766544
No 175
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=86.52 E-value=9 Score=37.26 Aligned_cols=86 Identities=9% Similarity=0.027 Sum_probs=40.9
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHH
Q 003768 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441 (796)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A 441 (796)
+...|++++|..+|+.+..-. +-+..-|-.|--+|-..|++++|...+........ -|.+.|-.+=.++...|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 344555555555555555432 11223333344444445555555555555444432 2334444444455555555555
Q ss_pred HHHHHHHH
Q 003768 442 CSVEEHML 449 (796)
Q Consensus 442 ~~l~~~M~ 449 (796)
.+-|+.-+
T Consensus 123 ~~aF~~Ai 130 (157)
T PRK15363 123 IKALKAVV 130 (157)
T ss_pred HHHHHHHH
Confidence 55554433
No 176
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.44 E-value=13 Score=40.23 Aligned_cols=134 Identities=18% Similarity=0.163 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHHCC---CCCCcccHHHHHHHHHHcCC
Q 003768 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS--MG----DGDMAFDMVKRMKSLG---INPRLRSYGPALSVFCNNGD 437 (796)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~--~g----~~~~A~~l~~~M~~~g---i~Pd~~ty~~LI~~~~~~G~ 437 (796)
.+++...+++.|++.|..-+..+|-+..-.... .. ....|..+++.|++.. ..++-+++..||.. ...+
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 367788899999999999988777663333322 22 3567999999999874 34677888888776 3333
Q ss_pred ----hHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCChhHHHH--HHHHH
Q 003768 438 ----VDKACSVEEHMLEHGVYPEEP--ELEALLRVSVEAGK--GDRVYYLLHKLRTSVRKVSPSTADV--IAKWF 502 (796)
Q Consensus 438 ----~~~A~~l~~~M~~~gv~pd~~--ty~~LI~~~~~~G~--~~~A~~ll~~M~~~~~~~~p~t~~~--I~~~~ 502 (796)
++.+..+|+.+.+.|+..+.. ..+.+|..+-.... ..++.++++.+++++..+.+..|.. +.++.
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall 229 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALL 229 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhc
Confidence 355778889999988877543 33344433322222 4589999999999966666665544 44443
No 177
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=86.28 E-value=2.8 Score=33.59 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=29.7
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 431 VFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 431 ~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+...|++++|.++|+...+.. | +...+..+-..+...|++++|..+|++..+.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455566666666666666544 3 3344445555555666666666666665443
No 178
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=85.86 E-value=65 Score=36.11 Aligned_cols=251 Identities=10% Similarity=-0.010 Sum_probs=135.3
Q ss_pred HHHHHHH--HhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhc
Q 003768 195 RVELDMC--SKRGDVMGAIRLYDKAQR-EGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (796)
Q Consensus 195 n~lI~a~--~k~G~~~~A~~lf~~M~~-~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~ 271 (796)
..-|.++ |-.++-..|..++-.+.. .-++-|++....+-+.+. ..|+.+.|...|.. ..|.+
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~----------~~Gdn~~a~~~Fe~-----~~~~d 262 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLY----------YNGDYFQAEDIFSS-----TLCAN 262 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhh----------hhcCchHHHHHHHH-----HhhCC
Confidence 3344444 345666666666666653 456677888888888888 88999999999951 11222
Q ss_pred cCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcC-------CCCCcceeccchhhhHHhhhhcC---CCCc
Q 003768 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-------QFSNGHMKLNSQLLDGRSNLERG---PDDQ 341 (796)
Q Consensus 272 ~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~G-------i~Pd~~ty~~g~~~~A~~l~~~m---~pd~ 341 (796)
-..++..-.|..| +.+.|+.+....+...+.... +..-.+.|-..+...|+.+-+.- .|+.
T Consensus 263 py~i~~MD~Ya~L---------L~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~ 333 (564)
T KOG1174|consen 263 PDNVEAMDLYAVL---------LGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN 333 (564)
T ss_pred hhhhhhHHHHHHH---------HHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc
Confidence 1111111115555 556777777777766664432 11122222244444555444332 1111
Q ss_pred ccccccccccccchhhHHH--HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003768 342 SRKKDWSIDNQDADEIRLS--EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419 (796)
Q Consensus 342 ~ty~~~~~~~~~~~n~lI~--~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~ 419 (796)
+- ..++. .+...++.++|.=-|+....-- +-+.-.|-.|+..|...|.+.+|.-+-+...+. +.
T Consensus 334 ~~------------alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~ 399 (564)
T KOG1174|consen 334 HE------------ALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQ 399 (564)
T ss_pred ch------------HHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hh
Confidence 11 11222 2345667788877777655431 246678888888888888888877665543322 11
Q ss_pred CCcccHHHHHH---HHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 420 PRLRSYGPALS---VFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 420 Pd~~ty~~LI~---~~~~~G~~~~A~~l~~~M~~~gv~pd~-~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
-+..+.+ |+. .+-.-..-++|..+++.-.. +.|+- ..-+.+-..+...|..+++..+++.-...
T Consensus 400 ~sA~~Lt-L~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 400 NSARSLT-LFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred cchhhhh-hhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 1222222 111 11111224566666655443 23443 23345555566777777777777776655
No 179
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.32 E-value=53 Score=34.55 Aligned_cols=118 Identities=15% Similarity=0.174 Sum_probs=77.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHH
Q 003768 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV 444 (796)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l 444 (796)
.|..++|.++++.+.+.. +-|.++|--=|-..-..|+--+|.+-+.+..+. +.-|...|.-|-..|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 456778888888887766 667777776666666667766777777666655 556788888888888888888888888
Q ss_pred HHHHHhCCCCCCHHHH-HHHHHHHHhcC---ChhHHHHHHHHHHhC
Q 003768 445 EEHMLEHGVYPEEPEL-EALLRVSVEAG---KGDRVYYLLHKLRTS 486 (796)
Q Consensus 445 ~~~M~~~gv~pd~~ty-~~LI~~~~~~G---~~~~A~~ll~~M~~~ 486 (796)
+++|.-. .|....| ..+-+.+--.| +.+-|..++.+-.+.
T Consensus 177 lEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 177 LEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8887763 3655444 33434332222 344555555554443
No 180
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=85.04 E-value=31 Score=36.97 Aligned_cols=54 Identities=11% Similarity=0.029 Sum_probs=35.2
Q ss_pred cccccccccCCCchhhhccccccccccccccccchhhhhhhhhccCCccCCCCCc
Q 003768 83 KGTASGASSLGTRDKRVDSAGEEKDGKRLTKDNNSRKNFAFLKSREMSSGNSSLR 137 (796)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (796)
...+-|.-..|..++.+..+- +..+..+...||+...|+..-.|++.....+..
T Consensus 33 da~vq~~~~~~gdle~vak~l-dssg~~l~~~rYgd~~fdil~~gg~~~pg~~~s 86 (412)
T KOG2297|consen 33 DAVVQGLEDNAGDLELVAKSL-DSSGNDLDYRRYGDILFDILFAGGRLQPGGVKS 86 (412)
T ss_pred HHHHHHHHhcCccHHHHHHHH-HhccccccHHHHHHHHHHHHHHhcccCCCCccc
Confidence 334444444555555555444 344567888999999999999998876555543
No 181
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=84.29 E-value=6 Score=32.38 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=28.9
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 431 VFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 431 ~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|.+.+++++|.++++.+.... | +...|...=..+.+.|++++|...|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455566666666666555542 2 2333334444455566666666666665554
No 182
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=83.84 E-value=15 Score=41.20 Aligned_cols=146 Identities=12% Similarity=0.035 Sum_probs=108.5
Q ss_pred chhhhcccCccccccccccCChHHHHHHHHHHHHcC-CCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhh
Q 003768 279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (796)
Q Consensus 279 ~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~G-i~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~ 357 (796)
..|...|+. --+..-++.|..+|-+..+.| +.|+++.| ++
T Consensus 398 ~v~C~~~N~------v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~---------------------------------~A 438 (660)
T COG5107 398 FVFCVHLNY------VLRKRGLEAARKLFIKLRKEGIVGHHVYIY---------------------------------CA 438 (660)
T ss_pred hHHHHHHHH------HHHHhhHHHHHHHHHHHhccCCCCcceeee---------------------------------HH
Confidence 447777777 667777899999999999988 66777777 99
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHH
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL-TAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCN 434 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty-~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd--~~ty~~LI~~~~~ 434 (796)
+|.-+|. |+..-|..+|+-=... -||...| +-.+.-+...++-+.|..+|+.-..+ +.-+ ...|-.+|..=.+
T Consensus 439 ~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~ 514 (660)
T COG5107 439 FIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESM 514 (660)
T ss_pred HHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHh
Confidence 9998876 5557899999753332 2455554 55677778899999999999954432 2222 4689999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003768 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~ 469 (796)
-|++..|..+-+.|.+ +.|-..+-......|.-
T Consensus 515 ~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~i 547 (660)
T COG5107 515 VGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAI 547 (660)
T ss_pred hcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhh
Confidence 9999999999988877 45776666666655543
No 183
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=83.40 E-value=7.2 Score=31.89 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=27.7
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
.|.+.+++++|.++++.+...+ +.+...|...=..+.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455555555555555555441 113333333444455555666666555555543
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=83.00 E-value=18 Score=33.57 Aligned_cols=90 Identities=21% Similarity=0.212 Sum_probs=65.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC---HHHHH-HHHHHH
Q 003768 394 GRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE---EPELE-ALLRVS 467 (796)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~gi~Pd--~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd---~~ty~-~LI~~~ 467 (796)
..++-..|+.++|..++++-...|+... ...+--+-..+...|+.++|..++++....- |+ ..... .+--++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 4456678999999999999999887665 3345556677888999999999999887653 44 22222 222356
Q ss_pred HhcCChhHHHHHHHHHHh
Q 003768 468 VEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 468 ~~~G~~~~A~~ll~~M~~ 485 (796)
...|+.++|...+-....
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 788999999998876544
No 185
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=82.18 E-value=18 Score=41.05 Aligned_cols=63 Identities=17% Similarity=0.157 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc----cHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR----SYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~----ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
+...++.+-.+|.+.|++++|...|++-.+. .|+.. +|..+-.+|.+.|+.++|.+.++...+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555556666665555554332 34432 344455555555665555555555544
No 186
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=81.91 E-value=3.1 Score=34.71 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCC-cccHHHHHHHHHHcCChHHHHHHHHH
Q 003768 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GI-NPR-LRSYGPALSVFCNNGDVDKACSVEEH 447 (796)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi-~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~ 447 (796)
.+|+.+-..|...|++++|...|++..+. |- .|+ ..+|+.+=..|...|+.++|.+.+++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35566666666666666666666654422 10 011 23334444444444555555554443
No 187
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=81.49 E-value=15 Score=39.11 Aligned_cols=93 Identities=12% Similarity=0.102 Sum_probs=69.8
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-c---ccHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-L---RSYGP 427 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~----~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~---~ty~~ 427 (796)
...+.-+.+.|++++|...|+.+...- |+. .++-.+-..|...|+.++|...|+.+.+. .|+ . ..+--
T Consensus 147 ~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~k 222 (263)
T PRK10803 147 NAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHH
Confidence 555555566799999999999998763 432 46677888999999999999999999865 133 1 22222
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCC
Q 003768 428 ALSVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 428 LI~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
+...+-..|+.++|..+|+...+.-
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3455668899999999999888753
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=80.41 E-value=17 Score=42.54 Aligned_cols=85 Identities=15% Similarity=0.131 Sum_probs=54.4
Q ss_pred HHHHHHhcCChHHHHHHHHH-----H-HHCCCCC---CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003768 393 VGRMAMSMGDGDMAFDMVKR-----M-KSLGINP---RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (796)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~-----M-~~~gi~P---d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (796)
-..++..+|+.++|.++.-+ | .+-+-+. +..+.-.+-..+-+...+..|-++|..|-+. ..+
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksi 779 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSL 779 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHH
Confidence 34555667777777765431 1 1112222 2334443444455567788899999888542 467
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 003768 464 LRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 464 I~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
++.....+++++|+.+-++..+-
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~ 802 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEF 802 (1081)
T ss_pred hhheeecccchHhHhhhhhCccc
Confidence 78888999999999998876653
No 189
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=79.80 E-value=26 Score=43.56 Aligned_cols=126 Identities=8% Similarity=0.034 Sum_probs=85.7
Q ss_pred chhhHHHHHHhccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----------
Q 003768 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----------- 421 (796)
Q Consensus 354 ~~n~lI~~~~k~g~~~~A~~lf~~M~~~g-i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd----------- 421 (796)
+.-.||..|-..+++++|.++.++-.... -.+...-|..+ .+.+.++.+.|..+ .+... +..+
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEHICD 107 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhh--hhhhh-cccccchhHHHHHHH
Confidence 33778999999999999999998655542 12223333333 56666666666555 22221 1111
Q ss_pred --------cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 422 --------LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 422 --------~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
...+-.|-.+|-+.|+.++|..+|+++.+.. .-|....|-+-..|+.. ++++|..++.+....
T Consensus 108 ~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 108 KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 1345556667778899999999999999876 44677788888888888 888888888776554
No 190
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=79.68 E-value=26 Score=37.52 Aligned_cols=141 Identities=9% Similarity=0.181 Sum_probs=105.9
Q ss_pred hccCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cC-ChHHHHHHHHHHHH-CCCCCCcccHHHHHHHHHHcCChH
Q 003768 364 KKYAFQRGFEIYEKMCL-DEVPMNEASLTAVGRMAMS-MG-DGDMAFDMVKRMKS-LGINPRLRSYGPALSVFCNNGDVD 439 (796)
Q Consensus 364 k~g~~~~A~~lf~~M~~-~gi~pd~~ty~~LI~~~~~-~g-~~~~A~~l~~~M~~-~gi~Pd~~ty~~LI~~~~~~G~~~ 439 (796)
++..+.+|+.+|+...- ..+.-|..+...|++.... .+ ....-.++.+.+.. .|-.++.-+-.++|..++..+++.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 34456788888885443 3566788888888888776 22 34444555555553 356788888899999999999999
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH-----HHhCCCCCChhHHHHHHHHHhc
Q 003768 440 KACSVEEHMLEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHK-----LRTSVRKVSPSTADVIAKWFNS 504 (796)
Q Consensus 440 ~A~~l~~~M~~~-gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~-----M~~~~~~~~p~t~~~I~~~~~~ 504 (796)
+-+++++..... +..-|..-|..+|+.....|+..-...+.++ +++.+..++|+....|..+|+.
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 999999887765 6667899999999999999998877777765 4566556777777777777753
No 191
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.20 E-value=89 Score=32.92 Aligned_cols=156 Identities=10% Similarity=0.016 Sum_probs=110.0
Q ss_pred cccCChHHHHHHHHHHHHc---C-CCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHH
Q 003768 295 NSSYRFDDLDSTFNEKENL---G-QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370 (796)
Q Consensus 295 ~~~g~~~~A~~lf~eM~~~---G-i~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~ 370 (796)
+...+.++..+++.+|... | ..|+..+. | --++-+....|+.+-
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l---------------------~-----------EqV~IAAld~~~~~l 70 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTL---------------------Y-----------EQVFIAALDTGRDDL 70 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHH---------------------H-----------HHHHHHHHHhcchHH
Confidence 3455678888888888653 3 44444333 1 223334456788899
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHH
Q 003768 371 GFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (796)
Q Consensus 371 A~~lf~~M~~~g-i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~ 449 (796)
|...++.+..+- -.+-+.-..+| .+-..|..++|.++++.+.+.. +-|.++|--=|...-..|.--+|.+-+.+..
T Consensus 71 Aq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL 147 (289)
T KOG3060|consen 71 AQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYL 147 (289)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 999999998763 11222222222 2345789999999999998775 4567777766666666777777777666655
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 450 EHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 450 ~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+. +.-|...|.-|-..|...|++++|.-.+++|.-.
T Consensus 148 ~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 148 DK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 53 5679999999999999999999999999999866
No 192
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=79.12 E-value=1.4e+02 Score=34.98 Aligned_cols=244 Identities=13% Similarity=0.060 Sum_probs=140.8
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
..-...+..+..+++++..+. + .+....+..=|..+...|+-.+-+.+=..|++.- +-..++|=++=--|-
T Consensus 253 ~~y~~c~f~~c~kit~~lle~----d---pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl- 323 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEK----D---PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYL- 323 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhh----C---CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHH-
Confidence 455667888899999987432 2 2333466677778899999888888888887542 223344443322222
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcch--hhh-----------------------cccC--ccc-
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ--LDY-----------------------GSSP--MID- 290 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~t--yn~-----------------------LI~~--~~~- 290 (796)
-.|+..+|+..|.-. -+++ +.+. |=. ++.| .+.
T Consensus 324 ---------~i~k~seARry~SKa-----t~lD-----~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L 384 (611)
T KOG1173|consen 324 ---------MIGKYSEARRYFSKA-----TTLD-----PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL 384 (611)
T ss_pred ---------HhcCcHHHHHHHHHH-----hhcC-----ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH
Confidence 235666777776311 0011 1111 111 1111 000
Q ss_pred --cccccccCChHHHHHHHHHHHHcCCCCCc---------ceeccchhhhHHhhhhcCCCCcccccccccccccchhhHH
Q 003768 291 --KLESNSSYRFDDLDSTFNEKENLGQFSNG---------HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (796)
Q Consensus 291 --~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~---------~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI 359 (796)
..+|.+.+.++-|.++|.+- .++.|+. +.|+.+...+|...
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A--~ai~P~Dplv~~Elgvvay~~~~y~~A~~~-------------------------- 436 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQA--LAIAPSDPLVLHELGVVAYTYEEYPEALKY-------------------------- 436 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHH--HhcCCCcchhhhhhhheeehHhhhHHHHHH--------------------------
Confidence 23455555566666655433 2333332 22222333333322
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChH
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~ 439 (796)
+..|++..+......+ -=+.+++.|=.+|-+.+..++|...++.-... ..-|..+|.++=-.|...|+++
T Consensus 437 --------f~~~l~~ik~~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 437 --------FQKALEVIKSVLNEKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred --------HHHHHHHhhhcccccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChH
Confidence 3334433333332221 24557888888888899999999888876655 3446778888878888889999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003768 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (796)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~ 470 (796)
.|.+.|..-.. +.||..+-..|+..+...
T Consensus 507 ~Aid~fhKaL~--l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 507 KAIDHFHKALA--LKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHh--cCCccHHHHHHHHHHHHh
Confidence 99988887654 568888888888776543
No 193
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=77.99 E-value=5.4 Score=39.26 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=54.7
Q ss_pred eeeecceeecccCC------CCChh----hHHHHHHHHHhhCCCCCceEEEeccccccCCCCCChhhHHHHHHHHHcCce
Q 003768 607 AVVDAANVGLYSQR------NFKPA----RVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADAL 676 (796)
Q Consensus 607 ~VIDG~nva~~~~~------~~~~~----~l~~vv~~~~~~~~~~~~~livl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (796)
+||||+||-+-... ..++. +|...+..+.. ..+...+||..-.+..+... .. .....-. +
T Consensus 1 LlIDGYNli~~~~~l~~~~~~~~l~~aR~~Li~~L~~y~~--~~~~~v~VVFDa~~~~~~~~-~~------~~~~gi~-V 70 (166)
T PF05991_consen 1 LLIDGYNLIHAWPELRSLAERGDLEAARERLIEMLSEYAQ--FSGYEVIVVFDAYKVPGGSE-ER------EEYGGIE-V 70 (166)
T ss_pred CeEcchhhhCCCHHHHhhcCcCCHHHHHHHHHHHHHHHhc--ccCCEEEEEEeCCcCCCCCc-ee------eeeCceE-E
Confidence 58999999743111 12232 33333333333 13456666664333322111 10 0112233 4
Q ss_pred EecCCCCCccHHHHHHHHh-----cCcEEEeCCcc-ccccc----cccCCchhhhHhhhc
Q 003768 677 YATPTGSNDDWYWLYAAIK-----FKCLLVTNDEM-RDHTF----QLLGNDFFPRWKERH 726 (796)
Q Consensus 677 ~~t~~~s~DD~~~lyaa~~-----~~~~~vsnD~m-RdH~~----~ll~~~~F~rW~~~h 726 (796)
++|+.+...|-|+.-.+-. .++.|||.|.+ +.+.+ .-++.+.|.+|....
T Consensus 71 vft~~~~tAD~~Ie~~v~~~~~~~~~v~VVTSD~~iq~~~~~~GA~~iss~ef~~~l~~~ 130 (166)
T PF05991_consen 71 VFTKEGETADDYIERLVRELKNRPRQVTVVTSDREIQRAARGRGAKRISSEEFLRELKAA 130 (166)
T ss_pred EECCCCCCHHHHHHHHHHHhccCCCeEEEEeCCHHHHHHHhhCCCEEEcHHHHHHHHHHH
Confidence 4477765666665544443 36899999975 44443 224445677766544
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=76.20 E-value=11 Score=30.50 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC-ChHHHHHHHHHH
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG-DVDKACSVEEHM 448 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G-~~~~A~~l~~~M 448 (796)
+|..+-..+...|++++|+..|++..+.. .-+...|..+=.+|.+.| +.++|.+.++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 44444444555555555555555444431 112233333333444444 344444444433
No 195
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.00 E-value=26 Score=37.81 Aligned_cols=104 Identities=10% Similarity=0.045 Sum_probs=79.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH
Q 003768 381 DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457 (796)
Q Consensus 381 ~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~---gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~ 457 (796)
.|......+...++.......+++.+...+-.++.. -..|+...|. .| -+|-.-+.+++..+...=+..|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~i-rlllky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WI-RLLLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH-HH-HHHHccChHHHHHHHhCcchhccccch
Confidence 466667777888887777788899998888777643 2344444442 33 345556677888888888889999999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 458 PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 458 ~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+++.||+.+.+.+++.+|..+.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999988888777655
No 196
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=75.74 E-value=9.7 Score=34.87 Aligned_cols=72 Identities=14% Similarity=0.174 Sum_probs=52.4
Q ss_pred CCCceEEEeccccc---cCCCCCChhhHHHHHHHHHcCceEecCCCCCccHH--HHHHHHhcCcEEEeCCccccccc
Q 003768 640 SKKWPLIVLHNRRI---TGHKMDQPVNRALIEKWKNADALYATPTGSNDDWY--WLYAAIKFKCLLVTNDEMRDHTF 711 (796)
Q Consensus 640 ~~~~~livl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~t~~~s~DD~~--~lyaa~~~~~~~vsnD~mRdH~~ 711 (796)
.|++++++|+.-.. ..+.....++...++.+.+.+.+-+......-+|+ .+-.|-..+++||||.++|--.+
T Consensus 22 rGHKT~vyLP~yY~~~~~~~~~~kvDd~~~F~~L~~l~lIkFi~~~~~~~~~~eV~~~Aek~~GI~VSs~E~~~~~~ 98 (122)
T PF14626_consen 22 RGHKTVVYLPKYYKNYVDDGGISKVDDLEAFQFLCDLDLIKFIEKRNRKKWFNEVLDEAEKTHGIFVSSSEYRRRNF 98 (122)
T ss_pred ccCeeEEEChHHHhcccccccccccchHHHHHHHHhcCceeeeccccHHHHHHHHHHHHHHcCcEEECCHHHhcccc
Confidence 59999999985443 23333467888899999999988877666655554 34445568999999999775554
No 197
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=75.00 E-value=36 Score=33.18 Aligned_cols=92 Identities=8% Similarity=-0.107 Sum_probs=70.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHH-HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003768 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (796)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~-~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~ 470 (796)
.+-..+...|++++|..+|+-.... -|....|--=+.+ +-..|++++|.+.|........ -|...+-.+=.++...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 3455667899999999999988765 3555544444444 4457999999999999887663 4566777777888999
Q ss_pred CChhHHHHHHHHHHhC
Q 003768 471 GKGDRVYYLLHKLRTS 486 (796)
Q Consensus 471 G~~~~A~~ll~~M~~~ 486 (796)
|+.+.|.+-|+.-...
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987765
No 198
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=74.89 E-value=1.1e+02 Score=38.64 Aligned_cols=156 Identities=18% Similarity=0.071 Sum_probs=95.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCcceec----cchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHH
Q 003768 296 SSYRFDDLDSTFNEKENLGQFSNGHMKL----NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRG 371 (796)
Q Consensus 296 ~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~----~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A 371 (796)
...+..+-+-++++++.. .++.--|. .++.++|+.-+.++.+ ..| +-.++---++|.+.+|
T Consensus 863 SqkDPkEyLP~L~el~~m--~~~~rkF~ID~~L~ry~~AL~hLs~~~~--~~~-----------~e~~n~I~kh~Ly~~a 927 (1265)
T KOG1920|consen 863 SQKDPKEYLPFLNELKKM--ETLLRKFKIDDYLKRYEDALSHLSECGE--TYF-----------PECKNYIKKHGLYDEA 927 (1265)
T ss_pred hccChHHHHHHHHHHhhc--hhhhhheeHHHHHHHHHHHHHHHHHcCc--ccc-----------HHHHHHHHhcccchhh
Confidence 344566666666666522 23333333 5666667666655531 112 4455555566777777
Q ss_pred HHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHH
Q 003768 372 FEIYEKMCLDEVPMNEASL----TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEH 447 (796)
Q Consensus 372 ~~lf~~M~~~gi~pd~~ty----~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~ 447 (796)
+.++. ||...+ .+..+-+...+.+++|--+|+..-+. .-.|.+|-.+|++++|+.+-..
T Consensus 928 L~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~q 990 (1265)
T KOG1920|consen 928 LALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQ 990 (1265)
T ss_pred hheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHh
Confidence 76653 444444 44444455678888888877654322 3477888888999999888887
Q ss_pred HHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 448 MLEHGVYPEEPE--LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 448 M~~~gv~pd~~t--y~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
|... -|... -..|+.-+...++.-+|.+++.+-..+
T Consensus 991 l~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 991 LSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred hcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence 7541 12222 256777778888888888888776554
No 199
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=74.73 E-value=24 Score=33.32 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=22.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g 417 (796)
.++.+.+.|.-+.-.++..++.+.+ .++....-.+..+|.+.|+..+|.+++.+..+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444444444444444443321 3333344444444444444444444444444444
No 200
>PLN02789 farnesyltranstransferase
Probab=74.31 E-value=92 Score=34.11 Aligned_cols=128 Identities=10% Similarity=-0.008 Sum_probs=90.9
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG-DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g-~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~ 434 (796)
+.+-..+...+..++|+.+.+++.+.. +-+..+|+.--..+.+.| ++++++..++++.+..- -+...|+.---.+-+
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~ 118 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHH
Confidence 445556667788999999999988753 223445665555566667 67999999999887632 233345544333445
Q ss_pred cCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 435 NGD--VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 435 ~G~--~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|+ .+++.++++.|.+.. .-|...|+-.--++.+.|+++++++.++++.+.
T Consensus 119 l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred cCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 554 367888888888754 246778888888888889999999999999886
No 201
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=74.30 E-value=67 Score=30.86 Aligned_cols=103 Identities=7% Similarity=0.025 Sum_probs=77.2
Q ss_pred HHHHHHhCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCcccHHHHHHHHHHcCC-hHHHHHHH
Q 003768 374 IYEKMCLDEVPMNEA--SLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNNGD-VDKACSVE 445 (796)
Q Consensus 374 lf~~M~~~gi~pd~~--ty~~LI~~~~~~g~~~~A~~l~~~M~~~g-----i~Pd~~ty~~LI~~~~~~G~-~~~A~~l~ 445 (796)
....|++.+..++.. ..|+++.=.+..+.+.-...+++.+.... -.-+-.+|.+++.+..+..- ---+..+|
T Consensus 24 ~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf 103 (145)
T PF13762_consen 24 HLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLF 103 (145)
T ss_pred HHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHH
Confidence 344556667777654 46888888888899998888888874321 12466789999999977766 34467889
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 003768 446 EHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (796)
Q Consensus 446 ~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A 476 (796)
+-|++.+.+++..-|..||.++.+.-..+..
T Consensus 104 ~~Lk~~~~~~t~~dy~~li~~~l~g~~~~~~ 134 (145)
T PF13762_consen 104 NFLKKNDIEFTPSDYSCLIKAALRGYFHDSL 134 (145)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCCcch
Confidence 9999989999999999999998776444444
No 202
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=73.83 E-value=26 Score=41.08 Aligned_cols=89 Identities=16% Similarity=0.125 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHH
Q 003768 368 FQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEE 446 (796)
Q Consensus 368 ~~~A~~lf~~M~~~-gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~ 446 (796)
+..+.+........ ....+...|.++.-.+...|++++|...+++....+ |+...|..+-..+...|+.++|.+.++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444444443332 233455778888777777899999999999988775 788889989999999999999999998
Q ss_pred HHHhCCCCCCHHHH
Q 003768 447 HMLEHGVYPEEPEL 460 (796)
Q Consensus 447 ~M~~~gv~pd~~ty 460 (796)
+-.... |...||
T Consensus 478 ~A~~L~--P~~pt~ 489 (517)
T PRK10153 478 TAFNLR--PGENTL 489 (517)
T ss_pred HHHhcC--CCCchH
Confidence 877643 665554
No 203
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=73.34 E-value=30 Score=39.37 Aligned_cols=59 Identities=12% Similarity=-0.101 Sum_probs=51.1
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~----~ty~~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (796)
+.+-..|.+.|++++|...|++-.+. .|+. .+|..+..+|++.|+.++|...+++..+.
T Consensus 79 ~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 79 VNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66777899999999999999997765 3553 46999999999999999999999998775
No 204
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=72.46 E-value=85 Score=33.69 Aligned_cols=102 Identities=8% Similarity=0.098 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCcccHHHHHHHHHHcCChHHHHHH
Q 003768 367 AFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSV 444 (796)
Q Consensus 367 ~~~~A~~lf~~M~~~-gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-gi~Pd~~ty~~LI~~~~~~G~~~~A~~l 444 (796)
....-.|+.+.+... |..++..+..++|..++..+++.+-+++++..... +..-|.+.|...|......||..-...+
T Consensus 181 ~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 181 KLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred chhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 344556666666653 56788999999999999999999999999887655 5667999999999999999998766666
Q ss_pred HHH-----HHhCCCCCCHHHHHHHHHHHH
Q 003768 445 EEH-----MLEHGVYPEEPELEALLRVSV 468 (796)
Q Consensus 445 ~~~-----M~~~gv~pd~~ty~~LI~~~~ 468 (796)
.++ +++.|+..+...-.+|-..+.
T Consensus 261 I~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 261 IDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred hhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 553 234566666655555544443
No 205
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=72.18 E-value=7.8 Score=32.24 Aligned_cols=62 Identities=21% Similarity=0.234 Sum_probs=48.1
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003768 423 RSYGPALSVFCNNGDVDKACSVEEHMLEH----GV-YPE-EPELEALLRVSVEAGKGDRVYYLLHKLR 484 (796)
Q Consensus 423 ~ty~~LI~~~~~~G~~~~A~~l~~~M~~~----gv-~pd-~~ty~~LI~~~~~~G~~~~A~~ll~~M~ 484 (796)
.+|+.+=..|...|+.++|...|++..+. |- .|+ ..++..|-..|...|+.++|.+++++-.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777888899999999999999887643 21 122 5577888888999999999999998754
No 206
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=72.07 E-value=9.5 Score=30.79 Aligned_cols=59 Identities=17% Similarity=0.158 Sum_probs=49.4
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG-DGDMAFDMVKRMKS 415 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g-~~~~A~~l~~~M~~ 415 (796)
..+=..+.+.|++++|+..|++..+.. +-+...|..+-.+|...| ++++|...++...+
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 555567788999999999999988864 346778999999999999 79999999987654
No 207
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=71.14 E-value=1.8e+02 Score=32.58 Aligned_cols=101 Identities=10% Similarity=-0.077 Sum_probs=61.5
Q ss_pred HHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccccCCcccCCCCChhhHHHHHhhhccCchh
Q 003768 192 FQLRVELDMC--SKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLC-SSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (796)
Q Consensus 192 ~tyn~lI~a~--~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~-~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~e 268 (796)
.-.-.||.+- --.|+.+.|.+-|+.|... +.|--.=|.++ ..+. +.|..+.|.+.-. .
T Consensus 119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAq-------r~GareaAr~yAe-------~ 179 (531)
T COG3898 119 EPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQ-------RLGAREAARHYAE-------R 179 (531)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHH-------hcccHHHHHHHHH-------H
Confidence 4444444433 3369999999999999852 33332223332 2222 5566666665552 1
Q ss_pred hhccCCCCC--cchhhhcccCccccccccccCChHHHHHHHHHHHHc-CCCCCcc
Q 003768 269 LGDSRDMDN--NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL-GQFSNGH 320 (796)
Q Consensus 269 m~~~~gv~d--~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~-Gi~Pd~~ 320 (796)
-- +..+ -..+.+++.. .|..|+++.|++|.+.-+.. -+.+|+.
T Consensus 180 Aa---~~Ap~l~WA~~AtLe~------r~~~gdWd~AlkLvd~~~~~~vie~~~a 225 (531)
T COG3898 180 AA---EKAPQLPWAARATLEA------RCAAGDWDGALKLVDAQRAAKVIEKDVA 225 (531)
T ss_pred HH---hhccCCchHHHHHHHH------HHhcCChHHHHHHHHHHHHHHhhchhhH
Confidence 11 1222 2447788888 99999999999999887654 3555554
No 208
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.76 E-value=1.2e+02 Score=36.65 Aligned_cols=104 Identities=10% Similarity=-0.032 Sum_probs=66.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~ 437 (796)
-|.-+...|+..+|.++-.+.+ .||--.|=-=+.+++..+++++-+++-+.++ ...-|-+...+|.+.|+
T Consensus 690 Tv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 690 TVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN 759 (829)
T ss_pred HHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence 3445556667777766655544 4667777777777777777777666655443 14556677777777777
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003768 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480 (796)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll 480 (796)
.++|.+.+.... +. .-...+|.+.|++.+|.++-
T Consensus 760 ~~EA~KYiprv~------~l---~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 760 KDEAKKYIPRVG------GL---QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHhhhhhccC------Ch---HHHHHHHHHhccHHHHHHHH
Confidence 777777765432 11 14667777777777766553
No 209
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=70.75 E-value=39 Score=37.05 Aligned_cols=97 Identities=8% Similarity=0.023 Sum_probs=76.6
Q ss_pred cchhhhHHhhhhcC-CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003768 324 NSQLLDGRSNLERG-PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD 402 (796)
Q Consensus 324 ~g~~~~A~~l~~~m-~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~ 402 (796)
.|+...|..+..+. .||-.-| -+.|.+|+..+++++-.++-.. .- ..+-|-..+.+|.+.|.
T Consensus 190 ~~~~k~A~kl~k~Fkv~dkrfw-----------~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 190 MGQEKQAEKLKKEFKVPDKRFW-----------WLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGN 252 (319)
T ss_pred CCCHHHHHHHHHHcCCcHHHHH-----------HHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCC
Confidence 56667777777777 7777777 8999999999999877765432 22 33789999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHH
Q 003768 403 GDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEH 447 (796)
Q Consensus 403 ~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~ 447 (796)
..+|...+.. .++..-+..|.++|++.+|.+.--+
T Consensus 253 ~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999988866 3457788999999999998766443
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=70.64 E-value=93 Score=31.42 Aligned_cols=73 Identities=14% Similarity=0.019 Sum_probs=47.0
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCS 237 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~G-i~pd~~tyn~LL~a~~ 237 (796)
.-..++..+|.+.|+.+.... |.....|+ ..-.+..++-+.|+++.|...|++..+.- -.| ..-+...+.+.+
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~--A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRY--PNSPYAPQ--AQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-KADYALYMLGLS 88 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH---TTSTTHHH--HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-THHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CCChHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-chhhHHHHHHHH
Confidence 446788999999999997653 33323333 34466788999999999999999988542 222 234454555544
No 211
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=70.27 E-value=35 Score=36.53 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003768 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (796)
Q Consensus 426 ~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~ 484 (796)
..++..+...|+.+.+.+.++++.... .-+...|..||.+|.+.|+...|...++.|.
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 334444555555555555555554432 1245555555555555555555555555443
No 212
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=69.96 E-value=21 Score=40.93 Aligned_cols=103 Identities=16% Similarity=0.243 Sum_probs=71.6
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChH
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~ 439 (796)
+-..+.|+++.|.++-++ ..+...|..|-+.+.+.|+++.|.+.|.+.. -|..|+--|.-.|+.+
T Consensus 326 eLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDRE 390 (443)
T ss_dssp HHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HH
T ss_pred HHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHH
Confidence 344556666666665433 3467799999999999999999999987643 3577888888889988
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003768 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M 483 (796)
+-.++-+.-..+| -+|..+.++.-.|+.++..++|.+-
T Consensus 391 ~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 391 KLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 8888877776665 2566666666778888887776653
No 213
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=69.78 E-value=93 Score=30.69 Aligned_cols=102 Identities=12% Similarity=0.160 Sum_probs=74.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 372 ~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
.+.+..+.+.|++|+...|..+|+.+.+.|.... +..+...++-||...-...+-.+... ...+.++=-+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~--~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQ--YPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHcc--ChHHHHHHHHHHHH
Confidence 5677777889999999999999999999998664 45556678889988877766544432 23445544444432
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003768 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 452 gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M 483 (796)
=...+..+++.+...|++-+|.++....
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0124577888889999999999998775
No 214
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=68.19 E-value=1.1e+02 Score=29.81 Aligned_cols=98 Identities=20% Similarity=0.257 Sum_probs=46.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCcc---cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 003768 399 SMGDGDMAFDMVKRMKSLGINPRLR---SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475 (796)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~gi~Pd~~---ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~ 475 (796)
+.++.+++..++..|.-. .|... ++-..| +.+.|++.+|..+|+++.+.+ |...--.+|+..|.....-..
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChH
Confidence 455666666666666532 33332 232222 345566666666666665543 433333444444433322222
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHhc
Q 003768 476 VYYLLHKLRTSVRKVSPSTADVIAKWFNS 504 (796)
Q Consensus 476 A~~ll~~M~~~~~~~~p~t~~~I~~~~~~ 504 (796)
=...-+++.+. +..|++..++..+...
T Consensus 96 Wr~~A~evle~--~~d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 96 WRRYADEVLES--GADPDARALVRALLAR 122 (160)
T ss_pred HHHHHHHHHhc--CCChHHHHHHHHHHHh
Confidence 22222334444 4555555555555443
No 215
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=68.12 E-value=1.2e+02 Score=29.55 Aligned_cols=108 Identities=14% Similarity=0.094 Sum_probs=69.1
Q ss_pred HHHhccCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChH
Q 003768 361 EDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi-~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~ 439 (796)
.-.+.++.+++..+++-|+.-.- .|..-++-.+| +...|++++|..+|+++... +-...|...+.++|-...-+
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~---~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER---APGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHHcCC
Confidence 34556799999999999986421 12333444443 56889999999999998766 34456777788888776666
Q ss_pred HHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 003768 440 KACSVEEH-MLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (796)
Q Consensus 440 ~A~~l~~~-M~~~gv~pd~~ty~~LI~~~~~~G~~~~A 476 (796)
-.++.+.. +.+.+- |..+ ..|++.+....+...|
T Consensus 94 ~~Wr~~A~evle~~~--d~~a-~~Lv~~Ll~~~~~~~a 128 (160)
T PF09613_consen 94 PSWRRYADEVLESGA--DPDA-RALVRALLARADLEPA 128 (160)
T ss_pred hHHHHHHHHHHhcCC--ChHH-HHHHHHHHHhccccch
Confidence 66666543 555553 3333 3445555444444433
No 216
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.02 E-value=21 Score=38.49 Aligned_cols=55 Identities=9% Similarity=-0.072 Sum_probs=42.7
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003768 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (796)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (796)
++-.-+.++++.++..=.+.|+-||-.+++.||+.+.+.+++.+|..+.-.|...
T Consensus 110 lllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 110 LLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3445567788888877778888888888888888888888888888877776644
No 217
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=67.92 E-value=1.2e+02 Score=35.12 Aligned_cols=118 Identities=14% Similarity=0.061 Sum_probs=77.0
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHCCC---CCCcccHHHHHHHHHHcCChHH
Q 003768 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVG-RMAMSMGDGDMAFDMVKRMKSLGI---NPRLRSYGPALSVFCNNGDVDK 440 (796)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI-~~~~~~g~~~~A~~l~~~M~~~gi---~Pd~~ty~~LI~~~~~~G~~~~ 440 (796)
....+.|.++++.+..+ -|+...|...- +.+...|++++|.+.|++...... ......|--+.-.++-..++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 44788999999999876 47776665443 455568999999999996543110 0112223334455777899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCh-------hHHHHHHHHHHh
Q 003768 441 ACSVEEHMLEHGVYPEEPELEALLRVS-VEAGKG-------DRVYYLLHKLRT 485 (796)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~LI~~~-~~~G~~-------~~A~~ll~~M~~ 485 (796)
|.+.|..+.+.. .-....|.-+..+| ...|+. ++|.++|.+...
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999998753 12344444444443 345666 788888877643
No 218
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=67.45 E-value=1.2e+02 Score=28.94 Aligned_cols=118 Identities=16% Similarity=0.137 Sum_probs=68.5
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CC----------------CCCcccHHH
Q 003768 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GI----------------NPRLRSYGP 427 (796)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-gi----------------~Pd~~ty~~ 427 (796)
.|.++++.++..+..... +..-||.+|--....-+-+..+++++.+-+. .+ .-+..-...
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD~ 91 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVDL 91 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHHH
T ss_pred hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHHH
Confidence 356778889888887643 4555555555544555555555555544221 00 012233345
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 428 LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|..+...|.-++-.++..++.. +-.++....-.+-.+|.+.|+..++.+++.+.-++
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 66677777777777777777764 23577777788888888888888888888887777
No 219
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=67.22 E-value=1.3e+02 Score=29.58 Aligned_cols=134 Identities=11% Similarity=0.107 Sum_probs=90.2
Q ss_pred HHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCC
Q 003768 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (796)
Q Consensus 304 ~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (796)
.+.+.-+...|+.|+..-| ..+|+.+.+.|+ ...+..+...++
T Consensus 14 lEYirSl~~~~i~~~~~L~---------------------------------~lli~lLi~~~~----~~~L~qllq~~V 56 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELY---------------------------------ELLIDLLIRNGQ----FSQLHQLLQYHV 56 (167)
T ss_pred HHHHHHHHHcCCCCCHHHH---------------------------------HHHHHHHHHcCC----HHHHHHHHhhcc
Confidence 4555566677777777666 999999999998 455667777888
Q ss_pred CCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 003768 384 PMNEASLTAVGRMAMSMG--DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (796)
Q Consensus 384 ~pd~~ty~~LI~~~~~~g--~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (796)
-+|.......+-.+.... -..-|.++++++.. .|..++..+...|++-+|.++...... -+.....
T Consensus 57 i~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~--------~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~ 124 (167)
T PF07035_consen 57 IPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT--------AYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPAR 124 (167)
T ss_pred cCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh--------hHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHH
Confidence 888887776664443321 13455666665542 356788889999999999998877532 1222335
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 462 ALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 462 ~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.++.+..+.++...-+.+++-...+
T Consensus 125 ~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 125 KFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6777777777766555555555443
No 220
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.93 E-value=57 Score=35.02 Aligned_cols=95 Identities=17% Similarity=0.262 Sum_probs=54.7
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcCChHHH
Q 003768 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKA 441 (796)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G~~~~A 441 (796)
.+.+++++|+..|.+-.+-. +-|.+-|..=..+|++.|..+.|++=.+.-... -|. ..+|..|=.+|...|+.++|
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHH
Confidence 35566677777776666542 335556666666677777666666555443332 122 34566666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHH
Q 003768 442 CSVEEHMLEHGVYPEEPELEA 462 (796)
Q Consensus 442 ~~l~~~M~~~gv~pd~~ty~~ 462 (796)
.+-|+.-++ +.|+-.+|-.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHH
Confidence 666655544 4466555543
No 221
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=63.92 E-value=52 Score=30.80 Aligned_cols=88 Identities=8% Similarity=0.007 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003768 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (796)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~ 469 (796)
...+|..+...+....+...++.+...+. .+...++.+|..|++.+. .+..+.+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 45678888888899999999999988774 677789999999998753 344444442 1344445567888888
Q ss_pred cCChhHHHHHHHHHHh
Q 003768 470 AGKGDRVYYLLHKLRT 485 (796)
Q Consensus 470 ~G~~~~A~~ll~~M~~ 485 (796)
.+.++++..++.++..
T Consensus 82 ~~l~~~~~~l~~k~~~ 97 (140)
T smart00299 82 AKLYEEAVELYKKDGN 97 (140)
T ss_pred cCcHHHHHHHHHhhcC
Confidence 8888888888877743
No 222
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=63.10 E-value=92 Score=29.83 Aligned_cols=76 Identities=12% Similarity=0.028 Sum_probs=50.8
Q ss_pred HhccCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCh
Q 003768 363 AKKYAFQRGFEIYEKMCLDE--VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (796)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~g--i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~ 438 (796)
.+.|++++|.+.|+.+..+- -+-..-+---|+.+|.+.+++++|...+++..+..=.---+-|.-.+.|++.-...
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 46778888888888888752 12234455568888888888888888888877664222235566666666654433
No 223
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=63.05 E-value=37 Score=36.37 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHh-----CCCCCCHHHHH
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPELE 461 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~-----~gv~pd~~ty~ 461 (796)
..+++.++..+...|+++.+...++++.... .-|...|..+|.+|.+.|+...|...|+.|.. .|+.|-..+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3577778888888888888888888877653 34677788888888888888888877776654 58888888877
Q ss_pred HHHHHH
Q 003768 462 ALLRVS 467 (796)
Q Consensus 462 ~LI~~~ 467 (796)
......
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 777664
No 224
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.81 E-value=47 Score=31.85 Aligned_cols=62 Identities=18% Similarity=0.100 Sum_probs=47.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-HHHHHHHHHhch
Q 003768 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSK 505 (796)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~-t~~~I~~~~~~~ 505 (796)
++.+.+.+.|++++..= .++|+.+...+..-.|.++++++++.+-.+++. .|+++..+-+.|
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 45567778888877655 567788888888899999999999986677777 477777765554
No 225
>PRK15331 chaperone protein SicA; Provisional
Probab=62.32 E-value=81 Score=30.98 Aligned_cols=87 Identities=11% Similarity=-0.042 Sum_probs=56.8
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHH
Q 003768 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441 (796)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A 441 (796)
+...|++++|..+|.-+...+. -|.--|..|-.+|-..+++++|..+|...-..+. -|.+.+-.+=.+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 4567888888888887776432 2333345555566667888888888876655432 2333344455667777888888
Q ss_pred HHHHHHHHh
Q 003768 442 CSVEEHMLE 450 (796)
Q Consensus 442 ~~l~~~M~~ 450 (796)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888777665
No 226
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=62.31 E-value=3.2e+02 Score=33.19 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHh
Q 003768 188 RSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFE 260 (796)
Q Consensus 188 ~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~ 260 (796)
..|...|..+--++.+.|++..+.+.|++....-+ -..+.|+.+=-.++ -+|.-..|..++.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~s----------aag~~s~Av~ll~ 381 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYS----------AAGSDSKAVNLLR 381 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHH----------HhccchHHHHHHH
Confidence 35668999999999999999999999999875422 23456666655555 5566667888874
No 227
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=62.00 E-value=1e+02 Score=30.64 Aligned_cols=97 Identities=15% Similarity=0.062 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHHcCChHHHHHHHHHHHhC---CCCCC----HH
Q 003768 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEH---GVYPE----EP 458 (796)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd--~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~---gv~pd----~~ 458 (796)
..+..+.+-|++.|+.++|++.+.++.+....|. +..+-.+|....-.+++..+.......... |-.++ ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3566777777888888888888877776643333 334455666666667777766665544332 21111 12
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 459 ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 459 ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|..|.. ...+++.+|-++|-+....
T Consensus 117 ~~~gL~~--l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLAN--LAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHH--HHhchHHHHHHHHHccCcC
Confidence 2222222 3467888888888776544
No 228
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.56 E-value=1.7e+02 Score=31.46 Aligned_cols=139 Identities=10% Similarity=0.102 Sum_probs=89.0
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHH
Q 003768 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~ 440 (796)
.....|++.+|..+|+......-. +...--.|+++|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 456778999999999988765322 2445567899999999999999999987544211122222223444444444444
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-HHHHHHHHHh
Q 003768 441 ACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFN 503 (796)
Q Consensus 441 A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~-t~~~I~~~~~ 503 (796)
...+-...-. .| |...=-.|-..+...|+.+.|.+.|-.+..+.++...+ ....+...|.
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~ 283 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFE 283 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 4444444443 36 55555677788889999999998888877776665544 3333444443
No 229
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.21 E-value=27 Score=40.69 Aligned_cols=103 Identities=16% Similarity=0.212 Sum_probs=77.8
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChH
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~ 439 (796)
.-..+.|+++.|.++-.+.. ++.-|..|-++..+.|++..|.+.|..-. -|..|+-.+...|+.+
T Consensus 645 elal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAE 709 (794)
T ss_pred hhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChh
Confidence 34456788888888776543 67889999999999999999999997543 3577888888899887
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003768 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M 483 (796)
.-..+-..-.+.|. + |.-.-+|...|+++++.++|-+-
T Consensus 710 ~l~~la~~~~~~g~--~----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 710 GLAVLASLAKKQGK--N----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHHhhcc--c----chHHHHHHHcCCHHHHHHHHHhc
Confidence 76666666666662 2 44445566789999998887654
No 230
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=60.77 E-value=18 Score=25.53 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRM 413 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M 413 (796)
+|+.|-+.|.+.|++++|..++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566667777777777777777663
No 231
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=60.44 E-value=2.2e+02 Score=29.74 Aligned_cols=188 Identities=12% Similarity=-0.052 Sum_probs=102.4
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~ 239 (796)
.-+.++.++|.+.|+.+...- |.....+ ...=.+..++-+.+++++|...|++..+.--.-...-|...+.+.+..
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~--~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRY--PFGPYSQ--QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCChHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 445689999999999996532 2220011 112245578899999999999999998653222234566666666521
Q ss_pred ccC---Ccc----cCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHH
Q 003768 240 AVG---VVK----PAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN 312 (796)
Q Consensus 240 ~~~---~~~----~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~ 312 (796)
..+ ... +....+...+.+.+. ++..+|.- |-...-..+|...+.++.+
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~-------------------~~~~li~~------yP~S~ya~~A~~rl~~l~~ 172 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFR-------------------DFSKLVRG------YPNSQYTTDATKRLVFLKD 172 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHH-------------------HHHHHHHH------CcCChhHHHHHHHHHHHHH
Confidence 100 000 000111111121111 12333444 5555555666554444432
Q ss_pred cCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhC--CCCCCHHHH
Q 003768 313 LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EVPMNEASL 390 (796)
Q Consensus 313 ~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~--gi~pd~~ty 390 (796)
+ +. ..+ -.+..-|.+.|.+..|..-|+.+.+. +.+...-..
T Consensus 173 ~-------------la-~~e-----------------------~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal 215 (243)
T PRK10866 173 R-------------LA-KYE-----------------------LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDAL 215 (243)
T ss_pred H-------------HH-HHH-----------------------HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHH
Confidence 2 00 000 12334477777777777777777764 334455566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 003768 391 TAVGRMAMSMGDGDMAFDMVKRM 413 (796)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M 413 (796)
-.|+.+|.+.|..++|......+
T Consensus 216 ~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 216 PLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHcCChHHHHHHHHHH
Confidence 67777777777777777766544
No 232
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=60.14 E-value=3.8 Score=38.72 Aligned_cols=86 Identities=12% Similarity=0.071 Sum_probs=64.5
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+|+.+.+.+.++....+++.+...+..-+....|.|+..|++.++.++..++++. .+.+-...++..|-+.
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKH 83 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhc
Confidence 557888888889999999999999887777889999999999999888888888862 2223345577777777
Q ss_pred CChHHHHHHHHHH
Q 003768 436 GDVDKACSVEEHM 448 (796)
Q Consensus 436 G~~~~A~~l~~~M 448 (796)
|.++.|.-++..+
T Consensus 84 ~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 84 GLYEEAVYLYSKL 96 (143)
T ss_dssp TSHHHHHHHHHCC
T ss_pred chHHHHHHHHHHc
Confidence 7777776666554
No 233
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=59.20 E-value=3.7e+02 Score=32.72 Aligned_cols=80 Identities=8% Similarity=0.030 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHC-CCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 003768 403 GDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (796)
Q Consensus 403 ~~~A~~l~~~M~~~-gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~ 481 (796)
..++.+.+++..+. +-.|++.-|-++- |+-.++++.|.+...+..+-+-.-+...|.-|.-.+...+++.+|+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 34677777777654 3445555554433 55667889999988888887656777888877777888888888888876
Q ss_pred HHH
Q 003768 482 KLR 484 (796)
Q Consensus 482 ~M~ 484 (796)
.-.
T Consensus 538 ~al 540 (799)
T KOG4162|consen 538 AAL 540 (799)
T ss_pred HHH
Confidence 543
No 234
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=58.31 E-value=2.1e+02 Score=28.88 Aligned_cols=126 Identities=11% Similarity=0.057 Sum_probs=84.1
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccH---HHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY---GPALSVF 432 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty---~~LI~~~ 432 (796)
--|-.++...|+..+|...|++-..--..-|....-.+.++....+++.+|...++.+-+.. |+-++= -.+-..|
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCchHHHHHHH
Confidence 34567778889999999999887765455678888888888889999999999998877653 333222 2233567
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH----HHHHHHHh
Q 003768 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY----YLLHKLRT 485 (796)
Q Consensus 433 ~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~----~ll~~M~~ 485 (796)
...|....|..-|+...+.- |+...-.---..+.+.|+.+++. ++++.+.+
T Consensus 171 aa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 171 AAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred HhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 77788888888888887753 44332222223345667666544 44444443
No 235
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=56.24 E-value=80 Score=30.24 Aligned_cols=75 Identities=9% Similarity=0.059 Sum_probs=53.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC---CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003768 396 MAMSMGDGDMAFDMVKRMKSLGINP---RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471 (796)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~gi~P---d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G 471 (796)
...+.|++++|.+.|+.+... ... ....---|+.+|.+.|+.++|...+++.++..-.--.+-|--.+.|++.-.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 345689999999999998876 211 123444589999999999999999999888642222355666666665433
No 236
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=56.05 E-value=3.6e+02 Score=32.49 Aligned_cols=91 Identities=19% Similarity=0.239 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH-
Q 003768 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE- 461 (796)
Q Consensus 383 i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~- 461 (796)
++-|.-..-.|.+++.+.|.-++|.+.|-+ .+. | -..++.|...+++.+|.++-+...- |.+.|.-
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~-p-----kaAv~tCv~LnQW~~avelaq~~~l----~qv~tlia 914 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSL-P-----KAAVHTCVELNQWGEAVELAQRFQL----PQVQTLIA 914 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHh---ccC-c-----HHHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHH
Confidence 344556667788888888888888887743 222 2 3466777777788777776554321 2222221
Q ss_pred -------------HHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 462 -------------ALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 462 -------------~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
--|..+.++|+.-.|.+++.+|.++
T Consensus 915 k~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 915 KQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 1244556788888888888888653
No 237
>PHA02875 ankyrin repeat protein; Provisional
Probab=53.74 E-value=3.6e+02 Score=30.17 Aligned_cols=207 Identities=11% Similarity=-0.035 Sum_probs=105.0
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccccCCcccC
Q 003768 171 KVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY---HYNVLLYLCSSAAVGVVKPA 247 (796)
Q Consensus 171 ~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~---tyn~LL~a~~~~~~~~~~~~ 247 (796)
++++.+.+.|..++... ....+.|+.+++.|+.+ +.+.+.+.|..|+.. ..+.|..| +
T Consensus 16 ~iv~~Ll~~g~~~n~~~----~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A-~---------- 76 (413)
T PHA02875 16 DIARRLLDIGINPNFEI----YDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDA-V---------- 76 (413)
T ss_pred HHHHHHHHCCCCCCccC----CCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHH-H----------
Confidence 44555555665554311 12345667777888875 444555667666533 23344443 3
Q ss_pred CCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchh
Q 003768 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (796)
Q Consensus 248 k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~ 327 (796)
+.|+.+.+..+++ .-.......+...++.| .. .+..|.. ++++.+.+.|..|+....
T Consensus 77 ~~g~~~~v~~Ll~-------~~~~~~~~~~~~g~tpL-~~------A~~~~~~----~iv~~Ll~~gad~~~~~~----- 133 (413)
T PHA02875 77 EEGDVKAVEELLD-------LGKFADDVFYKDGMTPL-HL------ATILKKL----DIMKLLIARGADPDIPNT----- 133 (413)
T ss_pred HCCCHHHHHHHHH-------cCCcccccccCCCCCHH-HH------HHHhCCH----HHHHHHHhCCCCCCCCCC-----
Confidence 4577776666653 00000000011112222 22 3445554 344555667877765433
Q ss_pred hhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChH
Q 003768 328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGD 404 (796)
Q Consensus 328 ~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~ty~~LI~~~~~~g~~~ 404 (796)
...+.+...+..|+.+-+ +.+.+.|..++. .-.|. +...+..|+.+
T Consensus 134 --------------------------~g~tpLh~A~~~~~~~~v----~~Ll~~g~~~~~~d~~g~Tp-L~~A~~~g~~e 182 (413)
T PHA02875 134 --------------------------DKFSPLHLAVMMGDIKGI----ELLIDHKACLDIEDCCGCTP-LIIAMAKGDIA 182 (413)
T ss_pred --------------------------CCCCHHHHHHHcCCHHHH----HHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHH
Confidence 013445555677775443 334445544332 22233 34445567655
Q ss_pred HHHHHHHHHHHCCCCCCcccH---HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 003768 405 MAFDMVKRMKSLGINPRLRSY---GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (796)
Q Consensus 405 ~A~~l~~~M~~~gi~Pd~~ty---~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ 458 (796)
+++.+.+.|..|+.... .+++...+..|+.+ +.+.+.+.|..++..
T Consensus 183 ----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 183 ----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNIM 231 (413)
T ss_pred ----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcchH
Confidence 44555667777765432 35666566777764 455566678777653
No 238
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=53.31 E-value=1e+02 Score=30.55 Aligned_cols=92 Identities=16% Similarity=0.068 Sum_probs=66.6
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCc----ccHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRL----RSYG 426 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~---gi~Pd~----~ty~ 426 (796)
.-+-+-|++.|+.+.|++.|.++.+....+. .-.+-.+|+...-.+++..+...+.+.... |-.++. ..|.
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~ 119 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYE 119 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 6678899999999999999999998765544 346678899999999999988888776543 222222 2333
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 003768 427 PALSVFCNNGDVDKACSVEEHML 449 (796)
Q Consensus 427 ~LI~~~~~~G~~~~A~~l~~~M~ 449 (796)
.|. +...+++.+|-++|-+..
T Consensus 120 gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 120 GLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHH--HHHhchHHHHHHHHHccC
Confidence 322 223678999888886654
No 239
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=52.02 E-value=1.5e+02 Score=31.90 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcCChHHHHHHHHHH
Q 003768 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHM 448 (796)
Q Consensus 370 ~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M 448 (796)
+...+=++|+..| +-+.+.+++.+|++.|.+-.+. .|+ .+-|.-=-.+|++.|..+.|.+=.+.-
T Consensus 76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~A 141 (304)
T KOG0553|consen 76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESA 141 (304)
T ss_pred hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4556666777766 2456789999999999988765 454 455555678899999999998877666
Q ss_pred HhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH
Q 003768 449 LEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (796)
Q Consensus 449 ~~~gv~pd-~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~ 497 (796)
+.. .|. ..+|..|=.+|...|++++|.+.|.+-.+- .|.-.+|..
T Consensus 142 l~i--Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 142 LSI--DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred Hhc--ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--CCCcHHHHH
Confidence 552 243 357889999999999999999998887765 444446655
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.90 E-value=1.6e+02 Score=31.14 Aligned_cols=100 Identities=14% Similarity=0.076 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCH-HHHHH
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLG----INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEE-PELEA 462 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~g----i~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~-gv~pd~-~ty~~ 462 (796)
.|+.-++. .+.|++..|...|..-.+.. ..||..-| |-..+...|+.+.|-.+|..+.+. +-.|-. ..+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 57766654 45677888888888877651 23333222 777888888888888888888764 222222 34444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 003768 463 LLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (796)
Q Consensus 463 LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~ 493 (796)
|-....+.|+.++|...|++..+. .|..+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~--YP~t~ 249 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR--YPGTD 249 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH--CCCCH
Confidence 555567889999999999999888 66655
No 241
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=51.69 E-value=3.5 Score=39.04 Aligned_cols=88 Identities=13% Similarity=0.111 Sum_probs=61.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003768 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471 (796)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G 471 (796)
.+|+.+-+.+.++.+...++.+...+..-+....+.++..|++.++.++..++++. .+..-...+++.|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 35667777788888888888888776666677888888999988887777777762 22233356677777778
Q ss_pred ChhHHHHHHHHHHhC
Q 003768 472 KGDRVYYLLHKLRTS 486 (796)
Q Consensus 472 ~~~~A~~ll~~M~~~ 486 (796)
.+++|..++.++...
T Consensus 85 l~~~a~~Ly~~~~~~ 99 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNH 99 (143)
T ss_dssp SHHHHHHHHHCCTTH
T ss_pred hHHHHHHHHHHcccH
Confidence 887777777765443
No 242
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=51.20 E-value=29 Score=24.36 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003768 193 QLRVELDMCSKRGDVMGAIRLYDKAQ 218 (796)
Q Consensus 193 tyn~lI~a~~k~G~~~~A~~lf~~M~ 218 (796)
+|+.|=..|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788899999999999999999954
No 243
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=50.63 E-value=2.8e+02 Score=27.92 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=14.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 003768 200 MCSKRGDVMGAIRLYDKAQRE 220 (796)
Q Consensus 200 a~~k~G~~~~A~~lf~~M~~~ 220 (796)
.+.+.|++.+|.+.|+.+...
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~ 34 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDR 34 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 345677888888888888754
No 244
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=49.81 E-value=37 Score=23.94 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003768 388 ASLTAVGRMAMSMGDGDMAFDMVKRMK 414 (796)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~ 414 (796)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 467777777777788888877777654
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=48.54 E-value=2.9e+02 Score=31.95 Aligned_cols=144 Identities=11% Similarity=-0.086 Sum_probs=95.6
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCcccHH
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLD-EVPMN-----EASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYG 426 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~-gi~pd-----~~ty~~LI~~~~~----~g~~~~A~~l~~~M~~~gi~Pd~~ty~ 426 (796)
-+++..+-.|+-+.+++++.+-.+. |+.-. ..+|..++..++. ..+.+.|.+++..+.+. -|+..-|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 3677777888999999999876553 33221 2356666666665 45788999999999875 58877776
Q ss_pred HHHH-HHHHcCChHHHHHHHHHHHhC--CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 003768 427 PALS-VFCNNGDVDKACSVEEHMLEH--GV-YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWF 502 (796)
Q Consensus 427 ~LI~-~~~~~G~~~~A~~l~~~M~~~--gv-~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~I~~~~ 502 (796)
-.-. .+...|++++|.+.|+..... .. ......+--+.-.+.-.+++++|.+.|.++.+.. .-++.+|.-+.+.|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 4443 344579999999999976532 11 1122233334444677899999999999998761 22444555555555
Q ss_pred h
Q 003768 503 N 503 (796)
Q Consensus 503 ~ 503 (796)
-
T Consensus 350 ~ 350 (468)
T PF10300_consen 350 L 350 (468)
T ss_pred H
Confidence 3
No 246
>PHA02875 ankyrin repeat protein; Provisional
Probab=48.48 E-value=2.1e+02 Score=32.18 Aligned_cols=112 Identities=15% Similarity=0.090 Sum_probs=64.0
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc---cHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS--LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR---SYGPALS 430 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t--y~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~---ty~~LI~ 430 (796)
.+.+...+..|.. ++++.+.+.|..|+... -.+.+...+..|+.+.+..++ +.|..++.. -++ .+.
T Consensus 103 ~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll----~~g~~~~~~d~~g~T-pL~ 173 (413)
T PHA02875 103 MTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI----DHKACLDIEDCCGCT-PLI 173 (413)
T ss_pred CCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hcCCCCCCCCCCCCC-HHH
Confidence 3445555666764 56666667777665432 124556667788876544444 455544432 333 445
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChhHHHHHH
Q 003768 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPEL---EALLRVSVEAGKGDRVYYLL 480 (796)
Q Consensus 431 ~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty---~~LI~~~~~~G~~~~A~~ll 480 (796)
..+..|+.+ +.+.+.+.|..|+...- .+++...+..|+.+-+.-++
T Consensus 174 ~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll 222 (413)
T PHA02875 174 IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFI 222 (413)
T ss_pred HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHH
Confidence 556677764 45556677877765432 35566556777765544443
No 247
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=47.65 E-value=1.1e+02 Score=31.04 Aligned_cols=77 Identities=10% Similarity=0.013 Sum_probs=51.4
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCcccHHHHHHHHHHcCChHH
Q 003768 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRLRSYGPALSVFCNNGDVDK 440 (796)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~---gi~Pd~~ty~~LI~~~~~~G~~~~ 440 (796)
+.|+ +.|++.|-.+...+..-+....-+|..-|. ..|.++|..++....+. +-.+|...+.+|.+.|-+.|+.+.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3344 678888888887776655555555544444 67788888888776643 335667777777777777777777
Q ss_pred HH
Q 003768 441 AC 442 (796)
Q Consensus 441 A~ 442 (796)
|+
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 65
No 248
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=47.22 E-value=88 Score=37.30 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=16.9
Q ss_pred hhhhhhccceeeEeeccCCCCc
Q 003768 7 VNTLQQQNQLFSLTLCKSSPPT 28 (796)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~ 28 (796)
.|||......|-|.||.|--.+
T Consensus 405 ~s~le~~~~~~~l~LCNSIGT~ 426 (1189)
T KOG2041|consen 405 YSTLENRSRVYFLQLCNSIGTS 426 (1189)
T ss_pred hhhhhcccceEEEeeecccCCc
Confidence 3677777888999999886544
No 249
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=47.19 E-value=1.2e+02 Score=34.92 Aligned_cols=77 Identities=17% Similarity=0.114 Sum_probs=43.0
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..|=+...+.|+++-|.+.|.+.. -|..|+-.|...|+.+.-.++.+.....|- +|....++.-.
T Consensus 351 ~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~l 415 (443)
T PF04053_consen 351 KQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLL 415 (443)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHc
Confidence 444445555666666666666543 245566666666666666666655555543 45555666666
Q ss_pred CChHHHHHHHHH
Q 003768 436 GDVDKACSVEEH 447 (796)
Q Consensus 436 G~~~~A~~l~~~ 447 (796)
|+++++.+++.+
T Consensus 416 gd~~~cv~lL~~ 427 (443)
T PF04053_consen 416 GDVEECVDLLIE 427 (443)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 666666665543
No 250
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.06 E-value=55 Score=24.96 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=32.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003768 198 LDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235 (796)
Q Consensus 198 I~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a 235 (796)
|-...+.|-+.++..++++|.+.|+..+...|..+|..
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 44556788899999999999999999999999988864
No 251
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=45.19 E-value=1.1e+02 Score=27.32 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=11.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003768 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (796)
Q Consensus 452 gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~ 482 (796)
.+.|+....++-|++|-|..++..|.++|+-
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~ 67 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEA 67 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 252
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=44.60 E-value=77 Score=30.48 Aligned_cols=84 Identities=11% Similarity=0.135 Sum_probs=59.6
Q ss_pred hhhhhhhHhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHH
Q 003768 152 NREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGD-VMGAIRLYDKAQREGIKLGQYHYN 230 (796)
Q Consensus 152 ~~~l~~~~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~-~~~A~~lf~~M~~~Gi~pd~~tyn 230 (796)
|..|. ++....+.+....+++.+.---...-.| .-+-.+|++++.+.++... -..+..+|..|++.+++++..-|-
T Consensus 43 N~iL~--hl~~~~nf~~~v~~L~~l~~l~~~~~~~-~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 43 NCILN--HLASYQNFSGVVSILEHLHFLNTDNIIG-WLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHH--HHHHccchHHHHHHHHHHHHhhHHHHhh-hcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 44444 5556667777777777662211000000 1122689999999988887 567899999999999999999999
Q ss_pred HHHHHHHc
Q 003768 231 VLLYLCSS 238 (796)
Q Consensus 231 ~LL~a~~~ 238 (796)
.||.+|.+
T Consensus 120 ~li~~~l~ 127 (145)
T PF13762_consen 120 CLIKAALR 127 (145)
T ss_pred HHHHHHHc
Confidence 99999984
No 253
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=44.56 E-value=5e+02 Score=29.14 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003768 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE 220 (796)
Q Consensus 187 ~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~ 220 (796)
.+|| +..|.|++ |-...+++.-+++.+.|...
T Consensus 139 ls~d-iv~~lllS-yRdiqdydamI~Lve~l~~~ 170 (374)
T PF13281_consen 139 LSPD-IVINLLLS-YRDIQDYDAMIKLVETLEAL 170 (374)
T ss_pred cChh-HHHHHHHH-hhhhhhHHHHHHHHHHhhcc
Confidence 5666 44455554 88888999999999999864
No 254
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=44.34 E-value=4.4e+02 Score=28.41 Aligned_cols=101 Identities=21% Similarity=0.192 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCccc-HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH-HH
Q 003768 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRLRS-YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP-EL 460 (796)
Q Consensus 384 ~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-gi~Pd~~t-y~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~-ty 460 (796)
+-|.-.|-.|-..|...|+.+.|..-|..-.+. |-.|+... |...+..-....+..+|.++|+++.... |+.+ ..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D--~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD--PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC--CccHHHH
Confidence 457788888888888888888888888776543 33333221 2222222222335667888888888743 5444 44
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 461 EALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 461 ~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.-|--.+...|++.+|...++.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44455677888999999999988887
No 255
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=44.34 E-value=6e+02 Score=29.96 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHH
Q 003768 367 AFQRGFEIYEKMCL-DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSV 444 (796)
Q Consensus 367 ~~~~A~~lf~~M~~-~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l 444 (796)
.+.+..++|-++.. .+..+|.-+++.|=-.|--.|++++|.+.|+..... .| |...||-|=..++...+.++|..-
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsA 486 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISA 486 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHH
Confidence 34566777776654 454567777777777788899999999999987654 45 567899988899999999999999
Q ss_pred HHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHH
Q 003768 445 EEHMLEHGVYPEEP--ELEALLRVSVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 445 ~~~M~~~gv~pd~~--ty~~LI~~~~~~G~~~~A~~ll~~M 483 (796)
|.+.++ +.|+-+ =|| |--.|...|.+++|...|-+.
T Consensus 487 Y~rALq--LqP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 487 YNRALQ--LQPGYVRVRYN-LGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHh--cCCCeeeeehh-hhhhhhhhhhHHHHHHHHHHH
Confidence 999887 446532 344 334567889999988877653
No 256
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=44.29 E-value=3e+02 Score=26.70 Aligned_cols=75 Identities=16% Similarity=0.120 Sum_probs=41.4
Q ss_pred ccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHH
Q 003768 365 KYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443 (796)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g-i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~ 443 (796)
.++++++..+++.|.--. -.|..-+|-..| +...|++++|..+|++..+.+. ...|...+.++|-.-.-|-.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~---~~p~~kAL~A~CL~al~Dp~Wr 97 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAG---APPYGKALLALCLNAKGDAEWH 97 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCC---CchHHHHHHHHHHHhcCChHHH
Confidence 566777777777776531 112233333333 4566777777777777665532 2256666666665544444443
Q ss_pred H
Q 003768 444 V 444 (796)
Q Consensus 444 l 444 (796)
.
T Consensus 98 ~ 98 (153)
T TIGR02561 98 V 98 (153)
T ss_pred H
Confidence 3
No 257
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=43.10 E-value=6e+02 Score=29.65 Aligned_cols=111 Identities=12% Similarity=0.102 Sum_probs=62.1
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcC---CCCcccccccccccccchhhHHHHHHhccCHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG---PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m---~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~ 370 (796)
|.+.++.+.|...|.+-...-..||..+- ....+++....+.. .|+... ...+. =+.+.+.|++..
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls~-lk~~Ek~~k~~e~~a~~~pe~A~---------e~r~k-Gne~Fk~gdy~~ 376 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLLSK-LKEAEKALKEAERKAYINPEKAE---------EEREK-GNEAFKKGDYPE 376 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHHHH-HHHHHHHHHHHHHHHhhChhHHH---------HHHHH-HHHHHhccCHHH
Confidence 77778899999999887666555665444 12222222221111 111100 00011 234556677777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003768 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (796)
Q Consensus 371 A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (796)
|.+.|.++.... +-|...|+.-.-+|.+.|.+..|+.=-+...+.
T Consensus 377 Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 377 AVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 777777776665 446667777777777777777766655544433
No 258
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=42.99 E-value=3e+02 Score=26.24 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=63.6
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCccc----HHHHHHHHHHc
Q 003768 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRLRS----YGPALSVFCNN 435 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-gi~Pd~~t----y~~LI~~~~~~ 435 (796)
+++..|+++.|++.|.+-..- .+-....||.=..++--.|+.++|++=+++..+. |- ..+| |.--=.-|-..
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~--~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGD--QTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHh
Confidence 456789999999999887654 2346789999999999999999999988887765 32 2221 11111234456
Q ss_pred CChHHHHHHHHHHHhCC
Q 003768 436 GDVDKACSVEEHMLEHG 452 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~g 452 (796)
|+-++|..=|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 88888888887766555
No 259
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.85 E-value=1.7e+02 Score=31.02 Aligned_cols=104 Identities=9% Similarity=0.005 Sum_probs=68.8
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHHCCCCCCcccHH--HHH
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM-----AMSMGDGDMAFDMVKRMKSLGINPRLRSYG--PAL 429 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~-----~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~--~LI 429 (796)
.+...-.+.|+.+.|...|+...+..-..|..+++.++.. |.-..++.+|...+.++....- -|.+.-| +|+
T Consensus 217 ~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALc 295 (366)
T KOG2796|consen 217 GLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALC 295 (366)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCC-CchhhhchHHHH
Confidence 3444445578999999999988876667777777766644 3345677788888877765421 1222222 333
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003768 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (796)
Q Consensus 430 ~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~ 465 (796)
..| .|+...|.+.++.|+..- |...+-++++-
T Consensus 296 llY--lg~l~DAiK~~e~~~~~~--P~~~l~es~~~ 327 (366)
T KOG2796|consen 296 LLY--LGKLKDALKQLEAMVQQD--PRHYLHESVLF 327 (366)
T ss_pred HHH--HHHHHHHHHHHHHHhccC--CccchhhhHHH
Confidence 333 589999999999998853 66666665543
No 260
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.83 E-value=40 Score=36.29 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=39.0
Q ss_pred CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003768 185 KKDRSEQ-FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL 233 (796)
Q Consensus 185 ~g~~Pd~-~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL 233 (796)
..+.||. .-||..|....+.||+++|+.|+++.++.|+.--..+|-..+
T Consensus 250 ~~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 250 EPMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred CccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 3345665 457899999999999999999999999999876566664443
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=42.59 E-value=47 Score=24.38 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (796)
++..+.+.|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666677777777777666554
No 262
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=41.99 E-value=2.8e+02 Score=31.19 Aligned_cols=124 Identities=11% Similarity=0.070 Sum_probs=72.5
Q ss_pred HHHHhccCHHHHHHHHHHHHh-----CCCC---------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccH
Q 003768 360 SEDAKKYAFQRGFEIYEKMCL-----DEVP---------MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~-----~gi~---------pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty 425 (796)
+.|.+.|++..|...|+.... .+.. .-..+++.|.-+|.+.+++.+|.+.-+.....+ .+|+...
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 356788999999888877443 1111 123567777777888888888887777665542 1233222
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCC-hhHHHHHHHHHHhC
Q 003768 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV-EAGK-GDRVYYLLHKLRTS 486 (796)
Q Consensus 426 ~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~-~~G~-~~~A~~ll~~M~~~ 486 (796)
--==.+|...|+++.|+..|+.+.+ +.|+...-..=|..|. +... .++..+++..|-..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2223456666778888888877776 3466555444333332 2222 22345566666544
No 263
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=41.74 E-value=1.2e+02 Score=27.40 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 003768 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (796)
Q Consensus 370 ~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~ 430 (796)
+..+-+..+-...+.|+.....+.+++|-+..++..|.++|+-.+.. +.+....|..+|.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 44444555555667777777777777777777777777777766533 2223325554443
No 264
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.23 E-value=3.1e+02 Score=29.10 Aligned_cols=95 Identities=13% Similarity=0.135 Sum_probs=69.3
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCc-ccHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRL-RSYGPALSV 431 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi--~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-gi~Pd~-~ty~~LI~~ 431 (796)
+.-++. .+.|++..|..-|..-.+..- .-....+=.|-.++...|+.++|-.+|..+.+. +-.|.. ...--|-..
T Consensus 146 ~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 146 NAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 555554 567789999999999887631 112234555889999999999999999998764 222322 344445566
Q ss_pred HHHcCChHHHHHHHHHHHhC
Q 003768 432 FCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 432 ~~~~G~~~~A~~l~~~M~~~ 451 (796)
..+.|+.++|..+|++..+.
T Consensus 225 ~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 225 LGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 77889999999999998875
No 265
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=40.16 E-value=63 Score=22.63 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQR 219 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~ 219 (796)
.+++.|-..|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 6789999999999999999999999873
No 266
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.48 E-value=1.6e+02 Score=26.77 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 459 ELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 459 ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
-|..|+..|...|..++|.+++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 357777777777777777777777766
No 267
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=39.45 E-value=36 Score=32.15 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=27.2
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMC 201 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~ 201 (796)
.+.+.+...+|..||..|...|..| | .|+.||..+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pP------d--dW~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPP------D--DWDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCC------c--cHHHHHHHh
Confidence 3456778889999999998777544 3 699998765
No 268
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=39.41 E-value=5.2e+02 Score=27.85 Aligned_cols=111 Identities=11% Similarity=0.043 Sum_probs=77.3
Q ss_pred ccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCcccHHHH
Q 003768 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG---DGDMAFDMVKRMKSLGINPRLRSYGPA 428 (796)
Q Consensus 352 ~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g---~~~~A~~l~~~M~~~gi~Pd~~ty~~L 428 (796)
-+.+-.|=..|...|+++.|..-|..-.+-- .+|...+..+..++.... +-.++..+|+++.... .-|+++-.-|
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~lL 233 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSLL 233 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHHH
Confidence 3445566678889999999999998776532 245555556655555432 3567889999987652 2355555556
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003768 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (796)
Q Consensus 429 I~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~ 466 (796)
-.++...|+..+|...|+.|.+.. |....+..+|..
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 678889999999999999999864 555555555544
No 269
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.28 E-value=5.3e+02 Score=27.91 Aligned_cols=117 Identities=13% Similarity=0.054 Sum_probs=76.3
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCN 434 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~ 434 (796)
-.+...|...|+.+.|..++..+...--........+-|..+.+.....+..++-...... | |...=-.|-..+..
T Consensus 172 ~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~ 248 (304)
T COG3118 172 LLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD---PDDVEAALALADQLHL 248 (304)
T ss_pred HHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 4577888999999999999999876543333444445566666666666666666665544 5 44444446667778
Q ss_pred cCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHH
Q 003768 435 NGDVDKACSVEEHMLEH--GVYPEEPELEALLRVSVEAGKGDRV 476 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~--gv~pd~~ty~~LI~~~~~~G~~~~A 476 (796)
.|+.+.|++.+-.+..+ |. -|...=..||..+.--|..|.+
T Consensus 249 ~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 249 VGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred cCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCCCCHH
Confidence 89999998866555543 32 3344446677777666655543
No 270
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=38.91 E-value=2.5e+02 Score=35.74 Aligned_cols=76 Identities=9% Similarity=0.085 Sum_probs=49.3
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASL--TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty--~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~ 437 (796)
.+|-.+|++++|+.+-.+|... -|...- -.|+.-+...++.-+|-++..+-... +.-.+.-||+...
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~ 1041 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKE 1041 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhH
Confidence 3566678888888887777643 233332 45677777788888888877765433 3446666777777
Q ss_pred hHHHHHHHH
Q 003768 438 VDKACSVEE 446 (796)
Q Consensus 438 ~~~A~~l~~ 446 (796)
+++|..+-.
T Consensus 1042 ~~eAlrva~ 1050 (1265)
T KOG1920|consen 1042 WEEALRVAS 1050 (1265)
T ss_pred HHHHHHHHH
Confidence 777766543
No 271
>PHA03100 ankyrin repeat protein; Provisional
Probab=38.79 E-value=4.1e+02 Score=30.33 Aligned_cols=30 Identities=7% Similarity=0.037 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003768 194 LRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY 227 (796)
Q Consensus 194 yn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~ 227 (796)
-.+.+...++.|+.+- .+.+.+.|..|+..
T Consensus 35 ~~t~L~~A~~~~~~~i----vk~Ll~~g~~~~~~ 64 (480)
T PHA03100 35 PVLPLYLAKEARNIDV----VKILLDNGADINSS 64 (480)
T ss_pred cchhhhhhhccCCHHH----HHHHHHcCCCCCCc
Confidence 3466777788888654 44445567777643
No 272
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=38.76 E-value=1.6e+02 Score=26.59 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+..+-++.+....+.|+.....+.|++|.|..++..|.++|+-++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455556666677788888888888888888888888888877776
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=38.60 E-value=7e+02 Score=29.09 Aligned_cols=76 Identities=8% Similarity=0.023 Sum_probs=46.1
Q ss_pred HHHhccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCcccHHHHHHHHHHcC
Q 003768 361 EDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNG 436 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~g-i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi-~Pd~~ty~~LI~~~~~~G 436 (796)
..-+.|+.++|.+.|.+|.+.. ..-+....-.||.++...+...++..++.+-.+... +.-..+|+..+--+-..+
T Consensus 268 CarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~ 345 (539)
T PF04184_consen 268 CARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVG 345 (539)
T ss_pred HHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhc
Confidence 3445678888888888776543 112344666788888888888888888877543222 112355666554443333
No 274
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=37.46 E-value=3.5e+02 Score=28.99 Aligned_cols=94 Identities=13% Similarity=0.009 Sum_probs=57.2
Q ss_pred hhHHHHHH-hccCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 003768 356 EIRLSEDA-KKYAFQRGFEIYEKMCLDEV----PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (796)
Q Consensus 356 n~lI~~~~-k~g~~~~A~~lf~~M~~~gi----~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~ 430 (796)
..++...| ..+..++|.++|+.+...+. ..+.-.-.+++....+.|+.+.-..+++..... ++..-...+|.
T Consensus 133 ~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~ 209 (324)
T PF11838_consen 133 ALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLS 209 (324)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHH
Confidence 44455555 23357888899988887422 345556666777777777766655555444433 35566677888
Q ss_pred HHHHcCChHHHHHHHHHHHhCC
Q 003768 431 VFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 431 ~~~~~G~~~~A~~l~~~M~~~g 452 (796)
+++...+.+...++++.....+
T Consensus 210 aLa~~~d~~~~~~~l~~~l~~~ 231 (324)
T PF11838_consen 210 ALACSPDPELLKRLLDLLLSND 231 (324)
T ss_dssp HHTT-S-HHHHHHHHHHHHCTS
T ss_pred hhhccCCHHHHHHHHHHHcCCc
Confidence 8888888777777777777754
No 275
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=36.91 E-value=1.3e+02 Score=30.98 Aligned_cols=74 Identities=12% Similarity=0.094 Sum_probs=48.7
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCcccHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALS 430 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~--gi~Pd~~ty~~LI~ 430 (796)
+..|+.+.+.+.+++|+.+.++=.+.. +-|..+=-.|+..+|-.|++++|..-++-.-.. ...+-..+|..+|.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 556677778888888888776655543 445566677888888888888887666554332 23344556666665
No 276
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.90 E-value=1e+02 Score=23.50 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=11.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhHH
Q 003768 470 AGKGDRVYYLLHKLRTSVRKVSPSTA 495 (796)
Q Consensus 470 ~G~~~~A~~ll~~M~~~~~~~~p~t~ 495 (796)
.|...++..++++|++.++.++++.+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~ 40 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLI 40 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHH
Confidence 34444444444444444444444433
No 277
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.67 E-value=32 Score=32.49 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=27.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003768 203 KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (796)
Q Consensus 203 k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~ 237 (796)
+.|.-..|..+|..|.+.|-+|| .|+.||..+.
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a~ 139 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEAK 139 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHhc
Confidence 34566679999999999999997 7899988764
No 278
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=36.46 E-value=1.6e+02 Score=26.29 Aligned_cols=45 Identities=11% Similarity=0.037 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003768 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMK 414 (796)
Q Consensus 370 ~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~ 414 (796)
++.+-++.+-...+.|+.....+-+++|-+..|+..|.++|+-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444555555666666666666666666666666666666554
No 279
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=36.13 E-value=7e+02 Score=28.39 Aligned_cols=270 Identities=10% Similarity=0.018 Sum_probs=158.6
Q ss_pred cCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHc
Q 003768 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ----YHYNVLLYLCSS 238 (796)
Q Consensus 163 ~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~----~tyn~LL~a~~~ 238 (796)
.++...|...+-.... ....+-|+.....+-..+...|+.++|.-.|+...-. .|+. ..|..||.
T Consensus 209 ~~~hs~a~~t~l~le~-----~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~---- 277 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHD-----NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLG---- 277 (564)
T ss_pred hcccchhhhHHHHHHh-----hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHH----
Confidence 3445555555544422 2335567788899999999999999999999987643 2322 23444443
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC--CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCC
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF 316 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~ 316 (796)
..|+.++...+.. .+- .+. ...-|- +.+ |. .-...++..|+.+-++-....
T Consensus 278 ---------~eg~~e~~~~L~~-------~Lf---~~~~~ta~~wf--V~~---~~-l~~~K~~~rAL~~~eK~I~~~-- 330 (564)
T KOG1174|consen 278 ---------QEGGCEQDSALMD-------YLF---AKVKYTASHWF--VHA---QL-LYDEKKFERALNFVEKCIDSE-- 330 (564)
T ss_pred ---------hccCHhhHHHHHH-------HHH---hhhhcchhhhh--hhh---hh-hhhhhhHHHHHHHHHHHhccC--
Confidence 2333333322221 000 000 000011 111 11 334456666666555443321
Q ss_pred CC-cceec--------cchhhhHHhhhhcC----CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCC
Q 003768 317 SN-GHMKL--------NSQLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (796)
Q Consensus 317 Pd-~~ty~--------~g~~~~A~~l~~~m----~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (796)
|+ +..|- .++..+|.-.|+.- +-+.-.| --+|..|.-.|.+.+|.-+-..-... +
T Consensus 331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y-----------~GL~hsYLA~~~~kEA~~~An~~~~~-~ 398 (564)
T KOG1174|consen 331 PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIY-----------RGLFHSYLAQKRFKEANALANWTIRL-F 398 (564)
T ss_pred cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHH-----------HHHHHHHHhhchHHHHHHHHHHHHHH-h
Confidence 11 11121 56666676666664 3455667 88999999999999988766543322 1
Q ss_pred CCCHHHHHHH-HHHHHh-cCChHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHH
Q 003768 384 PMNEASLTAV-GRMAMS-MGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460 (796)
Q Consensus 384 ~pd~~ty~~L-I~~~~~-~g~~~~A~~l~~~M~~~gi~Pd~~-ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty 460 (796)
+-+.-+.+.+ ...|.- ..--++|..+++.-. .+.|+-. .-+.+-.-+...|..+.+..+++.-.. ..||....
T Consensus 399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L--~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH 474 (564)
T KOG1174|consen 399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL--KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLH 474 (564)
T ss_pred hcchhhhhhhcceeeccCchhHHHHHHHHHhhh--ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHH
Confidence 2234444433 122222 223467777777533 3456632 223333455677999999999887665 35999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 461 EALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 461 ~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+.|-+.+.....+.+|++.|..-.+.
T Consensus 475 ~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 475 NHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99999999999999999999877654
No 280
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=35.86 E-value=1.2e+02 Score=34.54 Aligned_cols=90 Identities=9% Similarity=-0.064 Sum_probs=51.5
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~ 239 (796)
+-+.++..+|.++|..+....-.... .-...+.-+.+|+||-.++ ++.-.....+..+. .| ...|-.|+.+...-
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f-~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPF-LLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchH-HHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 44667888999999988543211100 0111356778899987664 44444444444432 22 34456666665421
Q ss_pred ccCCcccCCCCChhhHHHHHhhh
Q 003768 240 AVGVVKPAKSGSGMRTLDTFEVS 262 (796)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~vf~~~ 262 (796)
+.+...+|.+.+...
T Consensus 91 --------~~k~~~kal~~ls~w 105 (549)
T PF07079_consen 91 --------KQKEYRKALQALSVW 105 (549)
T ss_pred --------HhhhHHHHHHHHHHH
Confidence 567788888888533
No 281
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=35.55 E-value=1.2e+02 Score=25.62 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=10.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCc
Q 003768 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (796)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~ 422 (796)
.+...+..|+.+ +++.+.+.|..++.
T Consensus 29 ~l~~A~~~~~~~----~~~~Ll~~g~~~~~ 54 (89)
T PF12796_consen 29 ALHYAAENGNLE----IVKLLLENGADINS 54 (89)
T ss_dssp HHHHHHHTTTHH----HHHHHHHTTTCTT-
T ss_pred HHHHHHHcCCHH----HHHHHHHhcccccc
Confidence 333444445432 33333344544444
No 282
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=35.25 E-value=5.7e+02 Score=27.11 Aligned_cols=122 Identities=11% Similarity=0.030 Sum_probs=79.5
Q ss_pred HhccCHHHHHHHHHHHHhCC--CCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHC--------CCCCC-----
Q 003768 363 AKKYAFQRGFEIYEKMCLDE--VPMNE------ASLTAVGRMAMSMGDGDMAFDMVKRMKSL--------GINPR----- 421 (796)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~g--i~pd~------~ty~~LI~~~~~~g~~~~A~~l~~~M~~~--------gi~Pd----- 421 (796)
.+.|+++.|..++.+.+..- ..|+. ..||.-...+.+..++++|...+++-.+. ...|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46789999999998877632 33443 45666666666654777776666543221 22233
Q ss_pred cccHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 422 LRSYGPALSVFCNNGD---VDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 422 ~~ty~~LI~~~~~~G~---~~~A~~l~~~M~~~gv~pd-~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..+...++.+|...+. .++|..+.+.+.... |+ ...|--=|+.+.+.++.+++.+.+.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3456667778877765 445677777775543 33 334444456666689999999999999988
No 283
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=34.70 E-value=74 Score=23.29 Aligned_cols=28 Identities=25% Similarity=0.185 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 459 ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 459 ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+|..|-..|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566777888888888888888888776
No 284
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=34.06 E-value=3e+02 Score=31.87 Aligned_cols=73 Identities=10% Similarity=-0.042 Sum_probs=52.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 003768 392 AVGRMAMSMGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY-PEEPELEALL 464 (796)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g-i~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~-pd~~ty~~LI 464 (796)
-|..++-+.|+.++|.+++.+|.+.. ..-+.-....||.++...+...++..++..-.+.... --..+|++.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 35666668899999999999997642 2223345566999999999999999999886543321 2345676544
No 285
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=32.92 E-value=1.4e+02 Score=27.30 Aligned_cols=27 Identities=4% Similarity=-0.086 Sum_probs=24.6
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCC
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDE 382 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~g 382 (796)
-++|+-+-++.-.++|+++.+.|.+.|
T Consensus 65 PtViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 65 PTVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred ChHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 778888999999999999999999987
No 286
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=32.05 E-value=2.4e+02 Score=28.69 Aligned_cols=78 Identities=15% Similarity=0.120 Sum_probs=54.4
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhH
Q 003768 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH---GVYPEEPELEALLRVSVEAGKGDR 475 (796)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~---gv~pd~~ty~~LI~~~~~~G~~~~ 475 (796)
+.|+ +.|...|-.+...+..-+....- .|..|--..|.++|..++.+..+. +=.+|...+.+|...+-+.|+.+.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~-aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQY-ALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHH-HHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3344 46788888887776554444443 444444577788998888877653 336788888999999999998888
Q ss_pred HHH
Q 003768 476 VYY 478 (796)
Q Consensus 476 A~~ 478 (796)
|+-
T Consensus 197 AYi 199 (203)
T PF11207_consen 197 AYI 199 (203)
T ss_pred hhh
Confidence 863
No 287
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=31.49 E-value=7.8e+02 Score=28.00 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=36.1
Q ss_pred HHhccCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003768 362 DAKKYAFQRGFEIYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (796)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~---~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (796)
..+.|.+..|.+.+.+-.. .++.|+.-.|-....+..+.|+.++|+.--++..+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 3567777778877777664 34556666666666677777777777766655443
No 288
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=31.27 E-value=2.9e+02 Score=28.61 Aligned_cols=76 Identities=12% Similarity=0.028 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 003768 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH--GVYPEEPELEALLRV 466 (796)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~--gv~pd~~ty~~LI~~ 466 (796)
.+.-|..+.+.+.+.+|+.+..+-.+.. .-|.-+-..++.-||-.|++++|..-++-...- ...+...+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3444556666666777776666554441 223444455667777777777776554443321 233445555555543
No 289
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=31.06 E-value=1.2e+03 Score=29.64 Aligned_cols=224 Identities=12% Similarity=0.090 Sum_probs=119.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC
Q 003768 197 ELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD 276 (796)
Q Consensus 197 lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~ 276 (796)
.+..|.+. +...|+..|-+..+..... ...|..|=.-|+ ..-++.+|...|+ ...+- +-.
T Consensus 465 ~a~~~~rK-~~~~al~ali~alrld~~~-apaf~~LG~iYr----------d~~Dm~RA~kCf~-------KAFeL-Dat 524 (1238)
T KOG1127|consen 465 VALGCMRK-NSALALHALIRALRLDVSL-APAFAFLGQIYR----------DSDDMKRAKKCFD-------KAFEL-DAT 524 (1238)
T ss_pred HHHHHhhh-hHHHHHHHHHHHHhcccch-hHHHHHHHHHHH----------HHHHHHHHHHHHH-------HHhcC-Cch
Confidence 33444443 3777777777766543221 235666666666 3446777888774 11111 112
Q ss_pred CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchh
Q 003768 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (796)
Q Consensus 277 d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n 356 (796)
+...+-.+.+- |+....++.|..+.-.--+. .| ..+- ..++ +-...
T Consensus 525 daeaaaa~adt------yae~~~we~a~~I~l~~~qk--a~-a~~~-----k~nW-------~~rG~------------- 570 (1238)
T KOG1127|consen 525 DAEAAAASADT------YAEESTWEEAFEICLRAAQK--AP-AFAC-----KENW-------VQRGP------------- 570 (1238)
T ss_pred hhhhHHHHHHH------hhccccHHHHHHHHHHHhhh--ch-HHHH-----Hhhh-------hhccc-------------
Confidence 56667778778 99999999998872111111 00 0000 0000 00111
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH--HHHHH
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL--SVFCN 434 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI--~~~~~ 434 (796)
.|.+.++...|..-|+.-.... +-|...|..|..+|..+|+...|.++|.+.... .|+ .+|.-.- ...|.
T Consensus 571 ----yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 571 ----YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAVMECD 642 (1238)
T ss_pred ----cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHHHHHH
Confidence 2445566666766666555433 346778888888888888888888888765433 333 2232221 23466
Q ss_pred cCChHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003768 435 NGDVDKACSVEEHMLEH------GVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~------gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~ 482 (796)
.|...+|...+...... +-.--..++-.+...+...|-..+|..+|++
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek 696 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK 696 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 67777777777665431 1112233344444444444554455555544
No 290
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=31.01 E-value=9.5e+02 Score=28.38 Aligned_cols=251 Identities=12% Similarity=0.014 Sum_probs=146.7
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.+-+.|...+|.-.|+.-+.+. .-+...|--|=..-+.+++-..|+..+.+-.+. .|+ ---+|+.. +
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~--NleaLmaL-A- 360 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-------PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPT--NLEALMAL-A- 360 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCc--cHHHHHHH-H-
Confidence 3445566777777777664322 113356666666666666666777777666543 332 22222222 2
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccc-----cccccccCChHHHHHHHHHHHH-
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMID-----KLESNSSYRFDDLDSTFNEKEN- 312 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~-----~~~~~~~g~~~~A~~lf~eM~~- 312 (796)
+.|...|.=..|+..++ .... +...|-.+..+... .+.+.....+....++|-++..
T Consensus 361 -----VSytNeg~q~~Al~~L~-------~Wi~-----~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~ 423 (579)
T KOG1125|consen 361 -----VSYTNEGLQNQALKMLD-------KWIR-----NKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQ 423 (579)
T ss_pred -----HHHhhhhhHHHHHHHHH-------HHHH-----hCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 23336666667777774 2211 11112222221000 0113344445566667766654
Q ss_pred cC--CCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH
Q 003768 313 LG--QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (796)
Q Consensus 313 ~G--i~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty 390 (796)
.+ +.||+. +.|=--|--.|.+++|.+.|+...... +-|...|
T Consensus 424 ~~~~~DpdvQ-----------------------------------~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lW 467 (579)
T KOG1125|consen 424 LPTKIDPDVQ-----------------------------------SGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLW 467 (579)
T ss_pred CCCCCChhHH-----------------------------------hhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHH
Confidence 34 333332 222223456789999999999888753 4478899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHHcCChHHHHHHHHHHH---hC------CCCCCHHH
Q 003768 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHML---EH------GVYPEEPE 459 (796)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd--~~ty~~LI~~~~~~G~~~~A~~l~~~M~---~~------gv~pd~~t 459 (796)
|-|=..++...+-++|..-+.+.++. +|. ..=|| |=-.|...|.+++|.+.|-+.+ +. +-.++...
T Consensus 468 NRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~i 544 (579)
T KOG1125|consen 468 NRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYN-LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENI 544 (579)
T ss_pred HHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehh-hhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHH
Confidence 99999999999999999999987764 666 23466 4445889999999988775433 32 12234557
Q ss_pred HHHHHHHHHhcCChhHHHH
Q 003768 460 LEALLRVSVEAGKGDRVYY 478 (796)
Q Consensus 460 y~~LI~~~~~~G~~~~A~~ 478 (796)
|.+|=.++.-.++.|-+.+
T Consensus 545 w~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 545 WQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHHHHHcCCchHHHH
Confidence 7777666666666554433
No 291
>PRK15331 chaperone protein SicA; Provisional
Probab=30.99 E-value=2.8e+02 Score=27.35 Aligned_cols=88 Identities=11% Similarity=0.047 Sum_probs=60.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHH-HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 003768 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC-NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (796)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~-~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~ 474 (796)
-+-..|++++|..+|.-+...+. -..-|.-=|.+++ ..++.++|...|......+. -|...+--+=.+|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~--~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDF--YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 34568999999999999876533 3333444444444 56899999999987655432 22222333446677889999
Q ss_pred HHHHHHHHHHhC
Q 003768 475 RVYYLLHKLRTS 486 (796)
Q Consensus 475 ~A~~ll~~M~~~ 486 (796)
.|...|.....+
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 999999988875
No 292
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=30.75 E-value=78 Score=23.82 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=14.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 003768 393 VGRMAMSMGDGDMAFDMVKRMKSL 416 (796)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~ 416 (796)
|.++|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666665543
No 293
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.15 E-value=3.3e+02 Score=28.73 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-cccHHHHHHHHHHcCChHHHHHHHHHHHhC---CCCCCHHHHH
Q 003768 390 LTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEH---GVYPEEPELE 461 (796)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~---gv~pd~~ty~ 461 (796)
|..+-+.+.+...+++|-..|..-... .-.|+ ...|-.+|--+.-..|...|...++.--+. .-.-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 444555555555665554444322111 01111 123444555556666777777777763332 1223556777
Q ss_pred HHHHHHHhcCChhHHHHHH
Q 003768 462 ALLRVSVEAGKGDRVYYLL 480 (796)
Q Consensus 462 ~LI~~~~~~G~~~~A~~ll 480 (796)
.||.+| ..|+.+++..++
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 777776 346666665543
No 294
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=30.06 E-value=5.2e+02 Score=25.08 Aligned_cols=95 Identities=16% Similarity=0.225 Sum_probs=57.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC---cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 003768 399 SMGDGDMAFDMVKRMKSLGINPR---LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475 (796)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~gi~Pd---~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~ 475 (796)
..++++++..++..|.-. .|+ ..+|-..| +...|++++|..+|+++.+.+. .. .|..-+.++|-...-|-
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~--~~-p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAG--AP-PYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCC--Cc-hHHHHHHHHHHHhcCCh
Confidence 478999999999988753 344 44555444 3567999999999999988752 22 34444455554444343
Q ss_pred HHHHH-HHHHhCCCCCChhHHHHHHHHH
Q 003768 476 VYYLL-HKLRTSVRKVSPSTADVIAKWF 502 (796)
Q Consensus 476 A~~ll-~~M~~~~~~~~p~t~~~I~~~~ 502 (796)
..+.. .++... +..+++..+++.+.
T Consensus 95 ~Wr~~A~~~le~--~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 95 EWHVHADEVLAR--DADADAVALVRALL 120 (153)
T ss_pred HHHHHHHHHHHh--CCCHhHHHHHHHHh
Confidence 33322 333444 55555554444443
No 295
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=29.75 E-value=3.9e+02 Score=29.99 Aligned_cols=76 Identities=18% Similarity=0.145 Sum_probs=48.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHH---HHHHHHHH---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003768 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG---PALSVFCN---NGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (796)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~---~LI~~~~~---~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~ 465 (796)
.|+-+|-...+++...++++.|...-...-..+-+ ....++-+ .|+.++|.+++..+....-.++..+|..+-.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34445778888888889988887651110001111 12234445 7888889988888766666677777776666
Q ss_pred HH
Q 003768 466 VS 467 (796)
Q Consensus 466 ~~ 467 (796)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 55
No 296
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=29.61 E-value=4.3e+02 Score=29.75 Aligned_cols=106 Identities=14% Similarity=0.019 Sum_probs=72.9
Q ss_pred HHHhcCChHHHHHHHHHHHHC-----C---------CCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 003768 396 MAMSMGDGDMAFDMVKRMKSL-----G---------INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (796)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~-----g---------i~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (796)
.|.+.|++..|...|+...+. + ....+.+++-|-.+|.+.++..+|.+.-+..++.+ .+|+-..-
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHH
Confidence 567888888888887764322 1 12335567778888999999999999888877754 23443333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH-HHHHHhc
Q 003768 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNS 504 (796)
Q Consensus 462 ~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~-I~~~~~~ 504 (796)
-==.+|...|+++.|...|+++..- .|.-..... |..+.+.
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQK 337 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHH
Confidence 3335677789999999999999987 555544444 5555443
No 297
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=29.21 E-value=7.1e+02 Score=26.34 Aligned_cols=160 Identities=11% Similarity=-0.010 Sum_probs=97.3
Q ss_pred cccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHH
Q 003768 295 NSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEI 374 (796)
Q Consensus 295 ~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~l 374 (796)
-+.|++++|.+.|+.+..+- |.. -| .++|. -.++-++.+.++.+.|...
T Consensus 45 L~~gn~~~A~~~fe~l~~~~--p~s-~~----~~qa~------------------------l~l~yA~Yk~~~y~~A~~~ 93 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRH--PFS-PY----SEQAQ------------------------LDLAYAYYKNGEYDLALAY 93 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcC--CCC-cc----cHHHH------------------------HHHHHHHHhcccHHHHHHH
Confidence 46789999999999998652 111 01 01121 3456678899999999999
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHh-------cCChHHHHHHHHHHHH---C----CCCCCcccH------------HH
Q 003768 375 YEKMCLD-EVPMNEASLTAVGRMAMS-------MGDGDMAFDMVKRMKS---L----GINPRLRSY------------GP 427 (796)
Q Consensus 375 f~~M~~~-gi~pd~~ty~~LI~~~~~-------~g~~~~A~~l~~~M~~---~----gi~Pd~~ty------------~~ 427 (796)
+++.... +-.|| +-|---|.+++. ..|...+..-|..|.+ . ...||...= -.
T Consensus 94 ~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~ 172 (254)
T COG4105 94 IDRFIRLYPTHPN-ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMA 172 (254)
T ss_pred HHHHHHhCCCCCC-hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 9877664 44444 556666666664 3344445555554443 2 122222111 11
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 428 ALSVFCNNGDVDKACSVEEHMLEH--GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 428 LI~~~~~~G~~~~A~~l~~~M~~~--gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+-.-|.+.|....|..-+++|.+. .-.-....+-.|..+|-.-|..++|...-.-+..+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 345667778888888888888776 11122344556677777788888777776666655
No 298
>PRK11906 transcriptional regulator; Provisional
Probab=28.25 E-value=4.8e+02 Score=30.05 Aligned_cols=111 Identities=13% Similarity=0.120 Sum_probs=71.8
Q ss_pred cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc---ccHHHHHHHHHHcCChHHHH
Q 003768 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL---RSYGPALSVFCNNGDVDKAC 442 (796)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~---~ty~~LI~~~~~~G~~~~A~ 442 (796)
....+|.++-+.-.+.+ .-|..+...+-.+..-.|+.+.|..+|++-... .||. ..|..++. .-+|+.++|.
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~--~~~G~~~~a~ 392 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVH--FHNEKIEEAR 392 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHH--HHcCCHHHHH
Confidence 35566777776666654 457777777777778888899999999986654 4553 34444443 3469999999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003768 443 SVEEHMLEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (796)
Q Consensus 443 ~l~~~M~~~-gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~ 482 (796)
+.+++-.+. -...-.....-.|+.|+..+ ++.|..++-+
T Consensus 393 ~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 393 ICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 988885442 22223344444566777655 5677776654
No 299
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=27.97 E-value=4.6e+02 Score=23.78 Aligned_cols=46 Identities=26% Similarity=0.369 Sum_probs=19.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|++++|..+.+.+ ..||...|-+|-. .+.|..+++..-+.+|..+
T Consensus 52 rG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 52 RGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred cchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 44444444444333 2344444444322 1344444444444444443
No 300
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=27.94 E-value=1.9e+02 Score=28.81 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 453 VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 453 v~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..|+...|..++..+...|+.++|.+++.++..-
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4577778887788888888888887777777765
No 301
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=27.59 E-value=6.6e+02 Score=31.80 Aligned_cols=128 Identities=9% Similarity=-0.013 Sum_probs=85.6
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH--HHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL--SVFC 433 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI--~~~~ 433 (796)
..|=.-|+...++.+|.+.|+...+-. .-|......+.+-|+...++++|+.+.-.--+. -..-...+|-+- -.|.
T Consensus 496 ~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qk-a~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 496 AFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQK-APAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhh-chHHHHHhhhhhcccccc
Confidence 455555666667888888888776543 236677888999999999999999883221111 111111222111 1345
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..++..+|..-|+.-.... .-|...|..|..+|.+.|+...|.++|.+...-
T Consensus 574 ea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred CccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 5677778877777766533 236678889999999999999999999887643
No 302
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=26.84 E-value=94 Score=20.08 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=11.4
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 003768 392 AVGRMAMSMGDGDMAFDMVK 411 (796)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~ 411 (796)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 44555556666666665553
No 303
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=26.56 E-value=5.9e+02 Score=27.34 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=69.0
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G 436 (796)
.++.-+-+...+.+..+.+..|+. ...--..|+.+...|++..|++++.+..+. +. ...-|+++ ..+ ..
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~-~~L--~~ 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCV-RHL--SS 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHH-HHH--hH
Confidence 355666666677777777777663 445566788888999999999999987654 11 11122211 111 12
Q ss_pred ChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003768 437 DVDKACSVEEHMLEH-----GVYPEEPELEALLRVSVEAGKGDRVYYL 479 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~-----gv~pd~~ty~~LI~~~~~~G~~~~A~~l 479 (796)
.+.+-....+++.+. -..-|+..|..++.+|.-.|+...+.+-
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dk 219 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDK 219 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHH
Confidence 233333444333332 1257899999999999988876655433
No 304
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=26.17 E-value=15 Score=29.88 Aligned_cols=37 Identities=24% Similarity=0.580 Sum_probs=24.0
Q ss_pred HHHHHHhcCcEEEeCCccccccccccCCchhhhHhhhcEEE
Q 003768 689 WLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVR 729 (796)
Q Consensus 689 ~lyaa~~~~~~~vsnD~mRdH~~~ll~~~~F~rW~~~hqv~ 729 (796)
|.-+|-..+++=++-|+-|.|++-+ .+..||.+||-.
T Consensus 20 Wy~~aA~~~g~~~~~d~ARE~vYGM----Py~eWK~~~Q~~ 56 (68)
T PF06844_consen 20 WYREAAEERGIEMDKDEAREIVYGM----PYDEWKAKHQTE 56 (68)
T ss_dssp HHHHHHHHCT----HHHHHHHHHSS-----HHHHCHCH---
T ss_pred HHHHHHHhcCCcCCHHHHHHHHhCC----CHHHHHHHHCCC
Confidence 4455566788999999999999976 789999999964
No 305
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=26.16 E-value=50 Score=30.32 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=21.9
Q ss_pred cCCCeeecCCCCceeEEe----eCCCceEeccc
Q 003768 734 DAGPEFYMPPPCSVVIQE----SEKGNWHIPIA 762 (796)
Q Consensus 734 ~~~~~~~~p~~y~~~~q~----~~~~~WHiP~~ 762 (796)
..|.....|+.|+.+.-+ ..+.+||||.-
T Consensus 80 ~~g~~~~~~~Fl~~V~vrF~iad~~~HYHVPLL 112 (124)
T COG2351 80 SRGVQLADPPFLDVVPVRFGIADVDEHYHVPLL 112 (124)
T ss_pred ccCcccCCCCccceEEEEEEEcCCCCceeeeeE
Confidence 456778888888887765 25679999974
No 306
>TIGR00305 probable toxin-antitoxin system toxin component, PIN family. This uncharacterized protein family, part of the PIN domain superfamily, is restricted to bacteria and archaea. A comprehensive in silico study of toxin-antitoxin systems by Makarova, et al. (2009) finds evidence this family represents the toxin-like component of one class of type 2 toxin-antitoxin systems.
Probab=25.77 E-value=54 Score=29.71 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=19.6
Q ss_pred CCCccHHHHHHHHhcCc-EEEeCC
Q 003768 682 GSNDDWYWLYAAIKFKC-LLVTND 704 (796)
Q Consensus 682 ~s~DD~~~lyaa~~~~~-~~vsnD 704 (796)
..-||..++-+|+..+| +|||+|
T Consensus 85 ~D~~D~~~l~~A~~~~ad~iVT~D 108 (114)
T TIGR00305 85 RDKKDNKFLNTAYASKANALITGD 108 (114)
T ss_pred CCchhHHHHHHHHhcCCCEEEECC
Confidence 35668888999999887 999999
No 307
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=25.08 E-value=4.2e+02 Score=24.02 Aligned_cols=86 Identities=17% Similarity=0.117 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHH
Q 003768 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEE 446 (796)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~ 446 (796)
..++|.-|-+-+...+-. .+++--+=+..+...|++++|..+.+.+ ..||+..|-+|-. .+.|..+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 356677776666655422 3333333344567889999999998776 5799998876543 46787777777777
Q ss_pred HHHhCCCCCCHHHH
Q 003768 447 HMLEHGVYPEEPEL 460 (796)
Q Consensus 447 ~M~~~gv~pd~~ty 460 (796)
.|..+| .|....|
T Consensus 93 rla~sg-~p~lq~F 105 (115)
T TIGR02508 93 RLAASG-DPRLQTF 105 (115)
T ss_pred HHHhCC-CHHHHHH
Confidence 887776 3444444
No 308
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=24.90 E-value=3.2e+02 Score=24.74 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 003768 390 LTAVGRMAMSMGDGDMAFDMVKRMKS 415 (796)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (796)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555555555555555555443
No 309
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=24.87 E-value=1.2e+02 Score=32.80 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=31.4
Q ss_pred CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccH
Q 003768 383 VPMNEAS-LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (796)
Q Consensus 383 i~pd~~t-y~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty 425 (796)
+.||..+ |+..|+...+.||+++|+.|++|-++.|+.--..+|
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3455544 578888888999999999999988888875433333
No 310
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=24.76 E-value=4.5e+02 Score=26.68 Aligned_cols=108 Identities=12% Similarity=0.096 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCcccHHHHHH-HHHHcCC--hHHHH
Q 003768 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALS-VFCNNGD--VDKAC 442 (796)
Q Consensus 368 ~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~--gi~Pd~~ty~~LI~-~~~~~G~--~~~A~ 442 (796)
-++|+++-.++. -++...-.....|++++|.+-++++.+. .++--...|.-+.. ++|.++. +-+|.
T Consensus 19 REE~l~lsRei~---------r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~ 89 (204)
T COG2178 19 REEALKLSREIV---------RLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEAT 89 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHH
Confidence 356666666654 3445555567788899988888877543 22223455666665 7887764 44565
Q ss_pred HHHHHHHhCCCCCCHHH----HHHHHHHH--------------HhcCChhHHHHHHHHHHh
Q 003768 443 SVEEHMLEHGVYPEEPE----LEALLRVS--------------VEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 443 ~l~~~M~~~gv~pd~~t----y~~LI~~~--------------~~~G~~~~A~~ll~~M~~ 485 (796)
-++.-+... ..|.... +-.-|.|. .+.|+++.|.++++-|..
T Consensus 90 ~l~~~l~~~-~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 90 LLYSILKDG-RLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHhcC-CCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 566555543 3343321 12223332 356777888777777754
No 311
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=24.68 E-value=1.8e+02 Score=19.45 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (796)
+|..+-..|...|++++|...|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666544
No 312
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=24.55 E-value=6.5e+02 Score=25.55 Aligned_cols=90 Identities=10% Similarity=-0.105 Sum_probs=50.3
Q ss_pred HHHHhccCHHHHHHHHHHHHhC--CCCCCHHHHHHHHH-HHHhcCC--hHHHHHHHHHHHHCCCCCCc----ccHHHHHH
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGR-MAMSMGD--GDMAFDMVKRMKSLGINPRL----RSYGPALS 430 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~--gi~pd~~ty~~LI~-~~~~~g~--~~~A~~l~~~M~~~gi~Pd~----~ty~~LI~ 430 (796)
-.....|++++|.+-++++.+. .++--...|.-+.. ++|..+. +-+|.-++.-.... ..|.. +.+-.-|.
T Consensus 37 I~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~-~~ps~~EL~V~~~~Yil 115 (204)
T COG2178 37 IFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG-RLPSPEELGVPPIAYIL 115 (204)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC-CCCCHHHcCCCHHHHHH
Confidence 3345666777777766666542 11112345555555 6666654 44566666555443 33432 23344455
Q ss_pred HHH--------------HcCChHHHHHHHHHHHh
Q 003768 431 VFC--------------NNGDVDKACSVEEHMLE 450 (796)
Q Consensus 431 ~~~--------------~~G~~~~A~~l~~~M~~ 450 (796)
|.| +.|+++.|.+.++-|.+
T Consensus 116 Gl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 116 GLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 544 34788888888888865
No 313
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.41 E-value=5.4e+02 Score=29.84 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHhCCCCCChh-HHHHHHHHHhchHHHHhc
Q 003768 474 DRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSKEAARLG 511 (796)
Q Consensus 474 ~~A~~ll~~M~~~~~~~~p~-t~~~I~~~~~~~~~~~a~ 511 (796)
+..-.+++.|+++ -+..+ .+.+-..+|++-...-.+
T Consensus 296 eDL~pvL~kM~eh--LitKNVA~eiA~~LcEsV~a~Leg 332 (587)
T KOG0781|consen 296 EDLNPVLDKMTEH--LITKNVAAEIAEKLCESVAASLEG 332 (587)
T ss_pred hhhHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHhhh
Confidence 3456677888887 66666 455577777776554444
No 314
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.30 E-value=6.8e+02 Score=27.66 Aligned_cols=181 Identities=8% Similarity=-0.041 Sum_probs=0.0
Q ss_pred cccCccccccccccCChHHHHHHHHHHHHcCCC------CCcceeccchhhhHHhhhhcC----CCCccccccccccccc
Q 003768 284 GSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF------SNGHMKLNSQLLDGRSNLERG----PDDQSRKKDWSIDNQD 353 (796)
Q Consensus 284 LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~------Pd~~ty~~g~~~~A~~l~~~m----~pd~~ty~~~~~~~~~ 353 (796)
+|.+ -.+.+...+..++.-+|.+-|.. --+.+|..|+.-+|....+.+ +.|...+
T Consensus 76 ~iaa------~s~v~~ak~~dqav~dav~y~~arEk~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~--------- 140 (491)
T KOG2610|consen 76 LIAA------ASNVEFAKKMDQAVIDAVKYGNAREKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAV--------- 140 (491)
T ss_pred hhhc------cchhhHHHHHHHHHHHHHHHhhhHHhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhh---------
Q ss_pred chhhHHHHHHhccCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 003768 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLD---EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (796)
Q Consensus 354 ~~n~lI~~~~k~g~~~~A~~lf~~M~~~---gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~ 430 (796)
+-.=++|.-.|+.+.-...+++..-. +++.....-..+.-++..+|-+++|++.-++-.+.+- -|.-.-.++-+
T Consensus 141 --kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~-~D~Wa~Ha~aH 217 (491)
T KOG2610|consen 141 --KFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINR-FDCWASHAKAH 217 (491)
T ss_pred --hhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCC-cchHHHHHHHH
Q ss_pred HHHHcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003768 431 VFCNNGDVDKACSVEEHMLEH---GVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (796)
Q Consensus 431 ~~~~~G~~~~A~~l~~~M~~~---gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~ 482 (796)
.+-..|+..++.+++.+-... +...-..-|=-.--.+...+.++.|+++|+.
T Consensus 218 Vlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 218 VLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
No 315
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=24.19 E-value=5.9e+02 Score=23.72 Aligned_cols=130 Identities=18% Similarity=0.139 Sum_probs=93.0
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHH-HHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS-VFC 433 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~-gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~-~~~ 433 (796)
......+...+.+..+...+...... ........+..+...+...+....+...+.........+ ......... .+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 141 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHH
Confidence 55667778888889898888887753 334566777788888888889999999999877654433 122222233 688
Q ss_pred HcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 434 NNGDVDKACSVEEHMLEHGV--YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~gv--~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..|+.+.|...+.......- ......+......+...++.+.+...+.+....
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 142 ELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 99999999999999855221 123444445555567788999999999988876
No 316
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=24.07 E-value=5.8e+02 Score=28.15 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=57.4
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhC---CCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCccc-H
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLD---EVPMNEASL--TAVGRMAMSMGDGDMAFDMVKRMKS-----LGINPRLRS-Y 425 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~---gi~pd~~ty--~~LI~~~~~~g~~~~A~~l~~~M~~-----~gi~Pd~~t-y 425 (796)
.++...-+.++.++|+++++++.+. --.||.+.| +.+.+.+...||..++.+++.+.++ .|+.|++.+ |
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 3455555566888999999988863 235677766 4556666678999999999988877 578776543 4
Q ss_pred HHHHHH-HHHcCChHHHH
Q 003768 426 GPALSV-FCNNGDVDKAC 442 (796)
Q Consensus 426 ~~LI~~-~~~~G~~~~A~ 442 (796)
..+=+- |-+.|++..++
T Consensus 160 Y~lssqYyk~~~d~a~yY 177 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFASYY 177 (380)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 444333 33456665544
No 317
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=23.09 E-value=1.3e+03 Score=29.01 Aligned_cols=110 Identities=15% Similarity=0.254 Sum_probs=59.2
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHH
Q 003768 369 QRGFEIYEKM-CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEH 447 (796)
Q Consensus 369 ~~A~~lf~~M-~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~ 447 (796)
++..+.+.++ .+.|+..+...+..+++.. .|++..++.+++++.. +.....+|+..+...+..
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia-~~~~~~IT~e~V~allg~------------- 245 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLA-GAGPEGVTYERAVALLGV------------- 245 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHh-hcCCCCCCHHHHHHHhcC-------------
Confidence 3344444433 4468877777777665554 4788888888888663 222444555543332211
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-HHHHHHHHHhc
Q 003768 448 MLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNS 504 (796)
Q Consensus 448 M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~-t~~~I~~~~~~ 504 (796)
.+......||+++. .++...++.++++|... +..+. ....|..+|+.
T Consensus 246 -------~~~~~I~~lidAL~-~~D~a~al~~l~~Li~~--G~dp~~~L~~LL~~fRD 293 (824)
T PRK07764 246 -------TDSALIDEAVDALA-AGDGAALFGTVDRVIEA--GHDPRRFAEDLLERLRD 293 (824)
T ss_pred -------CCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHH
Confidence 12222334444443 35666677777777666 44444 33334445544
No 318
>COG1569 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=23.04 E-value=1.4e+02 Score=28.41 Aligned_cols=41 Identities=27% Similarity=0.220 Sum_probs=29.5
Q ss_pred HHHHHHHHcCceE-ecCCC------CCccHHHHHHHHhcCc-EEEeCCc
Q 003768 665 ALIEKWKNADALY-ATPTG------SNDDWYWLYAAIKFKC-LLVTNDE 705 (796)
Q Consensus 665 ~~~~~~~~~~~~~-~t~~~------s~DD~~~lyaa~~~~~-~~vsnD~ 705 (796)
..+..+...+.++ .+|+. .-||.+||--|+..++ ++||-|.
T Consensus 65 ~~v~~l~~~~~~i~I~p~~~f~~~RDp~Dn~~L~~A~~~kA~~lvTgD~ 113 (142)
T COG1569 65 ELVLVLFESVSLIAINPLEKFNICRDPKDNKLLALAYESKADYLVTGDQ 113 (142)
T ss_pred HHHHHHHHhheeEeecccccccccCCchHHHHHHHHHhccCCEEEEcch
Confidence 3444455555566 44443 4689999999999887 8999987
No 319
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=22.99 E-value=2.4e+02 Score=28.03 Aligned_cols=59 Identities=17% Similarity=0.066 Sum_probs=40.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC-CCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 392 AVGRMAMSMGDGDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~-gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
..+.......+.+......+.+.+. ...|+..+|..++..+...|+.++|.++..++..
T Consensus 113 ~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 113 ALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333333555655555555544332 4578999999999999999999999888888876
No 320
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=22.75 E-value=5e+02 Score=29.42 Aligned_cols=125 Identities=13% Similarity=0.037 Sum_probs=74.5
Q ss_pred HHHhccCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCcccHHHHHH
Q 003768 361 EDAKKYAFQRGFEIYEKMC----LDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-----PRLRSYGPALS 430 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~----~~gi~-pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~-----Pd~~ty~~LI~ 430 (796)
.|.-.|+++.|....+.=. +-|-. .-...++.|-+++.-.|+++.|.+.++.-...-+. .-..+.-+|=+
T Consensus 204 TyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgN 283 (639)
T KOG1130|consen 204 TYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGN 283 (639)
T ss_pred eeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhh
Confidence 3444567777776544221 22311 12346788888888889999988888754322111 12233444666
Q ss_pred HHHHcCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 431 VFCNNGDVDKACSVEEHMLEH-----GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 431 ~~~~~G~~~~A~~l~~~M~~~-----gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
.|--..++.+|...+..-..- ...-....|-+|-.+|...|.-++|+.+...-.+
T Consensus 284 tytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 284 TYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 666667777887766532210 1122456677788888888888888887765443
No 321
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.80 E-value=1.3e+03 Score=26.88 Aligned_cols=111 Identities=8% Similarity=0.039 Sum_probs=71.2
Q ss_pred HHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHH
Q 003768 370 RGFEIYEKM-CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (796)
Q Consensus 370 ~A~~lf~~M-~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M 448 (796)
+..+.++.. ...|+..+......+++ ...|++..|+.++++....+ ....|+..+...+
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l---------------- 243 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI---------------- 243 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh----------------
Confidence 334444443 34688777777766654 34699999999998865432 2234555443322
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH-HHHHHhchH
Q 003768 449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKE 506 (796)
Q Consensus 449 ~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~-I~~~~~~~~ 506 (796)
|+ .+...+..+++.....+....|+.++.+|.+. |..|..+-. +..+++..-
T Consensus 244 ---g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~--G~d~~~~~~~l~~~~r~l~ 296 (484)
T PRK14956 244 ---GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQE--GQDIYKFLWDSIEFTHTLN 296 (484)
T ss_pred ---CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHH
Confidence 32 36667777888776655567899999999998 878874433 666665543
No 322
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=21.52 E-value=1.6e+02 Score=26.25 Aligned_cols=61 Identities=10% Similarity=0.013 Sum_probs=33.8
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCC
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG--DGDMAFDMVKRMKSLGI 418 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g--~~~~A~~l~~~M~~~gi 418 (796)
..+|..|...++.++|...+.++..... -.. ....+|..+...+ .-+....++..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~-~~~-vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQ-HHE-VVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGG-HHH-HHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCcc-HHH-HHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 5677788888999999888888643311 122 2333344444332 23345566666665543
No 323
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=21.29 E-value=4.7e+02 Score=23.26 Aligned_cols=98 Identities=9% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~ 468 (796)
....+|.-|...++.++|...+.++......+.+...-.....=-+...-+.+-.++..+.+.++......-.++-+.+.
T Consensus 4 ~i~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~ 83 (113)
T smart00544 4 KIFLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWRLLE 83 (113)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHh
Q ss_pred hcCChhH----HHHHHHHHHhC
Q 003768 469 EAGKGDR----VYYLLHKLRTS 486 (796)
Q Consensus 469 ~~G~~~~----A~~ll~~M~~~ 486 (796)
...+.+. |...+..+...
T Consensus 84 ~l~dl~~D~P~a~~~la~~~a~ 105 (113)
T smart00544 84 DIEDLELDIPNAWRNLAEFVAR 105 (113)
T ss_pred hChhhhcccccHHHHHHHHHHH
No 324
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=20.76 E-value=1e+03 Score=25.19 Aligned_cols=153 Identities=10% Similarity=0.028 Sum_probs=81.9
Q ss_pred hhHHHHHHhccC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 003768 356 EIRLSEDAKKYA---FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (796)
Q Consensus 356 n~lI~~~~k~g~---~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~ 432 (796)
-.++.+|...+. .++|..+++.+...... ...+|-.-|+.+-+.++.+++.+++.+|...- .-....+..++..+
T Consensus 88 ~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 88 RLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHHI 165 (278)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHHH
Confidence 456777777664 45566677777554322 13344444666666889999999999998762 21234445444444
Q ss_pred ---HHcCChHHHHHHHHHHHhCCCCCCHH-HHHH-HHHH-H--Hhc------CChhHHHHHHHHHHh-CCCCCChhH---
Q 003768 433 ---CNNGDVDKACSVEEHMLEHGVYPEEP-ELEA-LLRV-S--VEA------GKGDRVYYLLHKLRT-SVRKVSPST--- 494 (796)
Q Consensus 433 ---~~~G~~~~A~~l~~~M~~~gv~pd~~-ty~~-LI~~-~--~~~------G~~~~A~~ll~~M~~-~~~~~~p~t--- 494 (796)
.... ...|...++.+....+.|... -... ++.. + .+. ..++.+.++++.... ....+++.+
T Consensus 166 ~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a 244 (278)
T PF08631_consen 166 KQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASA 244 (278)
T ss_pred HHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4433 355666666666655555553 1111 1111 1 111 114455555654332 222556553
Q ss_pred -----HHHHHHHHhchHHHHhc
Q 003768 495 -----ADVIAKWFNSKEAARLG 511 (796)
Q Consensus 495 -----~~~I~~~~~~~~~~~a~ 511 (796)
|+.....++.+....|.
T Consensus 245 ~~~LLW~~~~~~~~~k~y~~A~ 266 (278)
T PF08631_consen 245 IHTLLWNKGKKHYKAKNYDEAI 266 (278)
T ss_pred HHHHHHHHHHHHHhhcCHHHHH
Confidence 44455566666666655
No 325
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=20.09 E-value=1.9e+02 Score=21.76 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=16.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCC
Q 003768 428 ALSVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 428 LI~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
|-.+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4456667777777777777666543
No 326
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=20.03 E-value=1.2e+03 Score=26.24 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=40.5
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHh--cCChHHHHHHHHHHHHC
Q 003768 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEA--SLTAVGRMAMS--MGDGDMAFDMVKRMKSL 416 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~--ty~~LI~~~~~--~g~~~~A~~l~~~M~~~ 416 (796)
.+.+.+++..|.++|+++..+ ++++.. .|..|..+|-. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445778999999999999988 666555 44555555553 66788899999876654
Done!