Query 003768
Match_columns 796
No_of_seqs 601 out of 3368
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 03:23:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003768.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003768hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 5E-100 2E-104 877.9 49.0 476 267-783 14-501 (501)
2 4g26_A Pentatricopeptide repea 100.0 6.2E-33 2.1E-37 319.2 21.6 216 168-470 8-223 (501)
3 2xpi_A Anaphase-promoting comp 99.9 4.8E-20 1.7E-24 214.4 27.5 306 149-486 151-545 (597)
4 2xpi_A Anaphase-promoting comp 99.9 1.5E-19 5.1E-24 210.3 30.3 310 149-511 85-461 (597)
5 3v33_A Ribonuclease ZC3H12A; r 99.8 1.2E-20 4.2E-25 187.7 8.6 124 604-733 24-159 (223)
6 3v32_B Ribonuclease ZC3H12A; r 99.8 4.4E-20 1.5E-24 180.0 8.6 131 604-742 24-166 (185)
7 3spa_A Mtrpol, DNA-directed RN 99.8 8.4E-20 2.9E-24 216.8 9.0 121 356-476 131-255 (1134)
8 3spa_A Mtrpol, DNA-directed RN 99.8 2.8E-20 9.6E-25 220.9 4.6 150 278-471 127-286 (1134)
9 1w3b_A UDP-N-acetylglucosamine 99.5 1.2E-12 4.1E-17 143.8 27.2 279 159-486 76-368 (388)
10 1w3b_A UDP-N-acetylglucosamine 99.5 4.9E-12 1.7E-16 138.8 31.2 298 160-509 9-323 (388)
11 2y4t_A DNAJ homolog subfamily 99.5 8.8E-12 3E-16 139.0 28.8 285 159-486 35-358 (450)
12 2y4t_A DNAJ homolog subfamily 99.5 5.6E-12 1.9E-16 140.6 24.3 277 190-511 25-349 (450)
13 1b89_A Protein (clathrin heavy 99.2 6.8E-12 2.3E-16 139.5 7.9 225 159-486 12-236 (449)
14 2gw1_A Mitochondrial precursor 99.2 1.2E-09 4.3E-14 123.3 25.6 286 159-486 15-401 (514)
15 3cv0_A Peroxisome targeting si 99.2 4.2E-09 1.4E-13 111.2 27.8 256 159-482 30-311 (327)
16 3hym_B Cell division cycle pro 99.2 6.8E-09 2.3E-13 109.7 27.7 259 159-486 31-299 (330)
17 1fch_A Peroxisomal targeting s 99.2 1.4E-09 4.7E-14 117.5 22.4 248 191-486 64-314 (368)
18 4eqf_A PEX5-related protein; a 99.2 1.2E-09 4E-14 118.5 21.9 255 159-482 74-352 (365)
19 4eqf_A PEX5-related protein; a 99.1 1.5E-09 5.1E-14 117.7 20.4 246 190-486 64-310 (365)
20 3ieg_A DNAJ homolog subfamily 99.1 2.8E-08 9.5E-13 106.0 29.1 279 159-486 12-335 (359)
21 3mkr_A Coatomer subunit epsilo 99.1 3.1E-09 1.1E-13 112.9 19.7 242 200-486 8-264 (291)
22 3cv0_A Peroxisome targeting si 99.1 2.4E-08 8.3E-13 105.3 25.0 246 192-486 22-269 (327)
23 2gw1_A Mitochondrial precursor 99.1 1.1E-08 3.8E-13 115.4 23.4 267 162-493 201-483 (514)
24 3hym_B Cell division cycle pro 99.1 1.6E-08 5.3E-13 106.9 22.9 233 192-486 23-265 (330)
25 3ieg_A DNAJ homolog subfamily 99.0 3.3E-08 1.1E-12 105.4 24.8 276 191-511 3-326 (359)
26 1b89_A Protein (clathrin heavy 99.0 5.9E-10 2E-14 123.9 10.4 216 193-508 8-224 (449)
27 3mkr_A Coatomer subunit epsilo 99.0 9.3E-09 3.2E-13 109.3 19.4 242 159-478 43-286 (291)
28 3uq3_A Heat shock protein STI1 99.0 3.6E-08 1.2E-12 100.1 20.2 225 192-486 6-236 (258)
29 3fp2_A TPR repeat-containing p 99.0 4.7E-08 1.6E-12 111.2 23.4 84 159-260 34-117 (537)
30 2ho1_A Type 4 fimbrial biogene 98.9 5.9E-08 2E-12 98.8 20.7 199 192-486 38-238 (252)
31 2vq2_A PILW, putative fimbrial 98.9 7.9E-08 2.7E-12 95.4 20.7 202 191-486 8-211 (225)
32 1fch_A Peroxisomal targeting s 98.9 4.3E-08 1.5E-12 105.7 19.9 255 159-482 73-355 (368)
33 3fp2_A TPR repeat-containing p 98.8 5.5E-07 1.9E-11 102.2 26.1 255 164-486 216-491 (537)
34 2ho1_A Type 4 fimbrial biogene 98.8 4.4E-07 1.5E-11 92.3 21.6 179 294-511 47-229 (252)
35 2vq2_A PILW, putative fimbrial 98.8 4.5E-07 1.5E-11 89.8 20.8 164 280-486 10-176 (225)
36 1xnf_A Lipoprotein NLPI; TPR, 98.7 4.4E-08 1.5E-12 100.7 12.1 84 163-260 18-101 (275)
37 1xnf_A Lipoprotein NLPI; TPR, 98.7 3.3E-07 1.1E-11 94.1 16.5 222 202-486 16-244 (275)
38 1ouv_A Conserved hypothetical 98.7 9E-06 3.1E-10 84.1 27.3 226 191-486 6-251 (273)
39 3nf1_A KLC 1, kinesin light ch 98.7 5.3E-07 1.8E-11 94.1 17.7 245 190-485 26-306 (311)
40 3uq3_A Heat shock protein STI1 98.6 7.8E-07 2.7E-11 90.1 17.9 217 159-451 14-236 (258)
41 2q7f_A YRRB protein; TPR, prot 98.6 4.4E-07 1.5E-11 91.3 15.3 200 190-486 22-222 (243)
42 2q7f_A YRRB protein; TPR, prot 98.6 7.1E-07 2.4E-11 89.8 16.6 187 279-511 24-213 (243)
43 2ond_A Cleavage stimulation fa 98.5 1.1E-05 3.9E-10 85.5 24.3 227 208-486 33-270 (308)
44 2pl2_A Hypothetical conserved 98.5 1.7E-06 5.8E-11 87.1 16.5 201 223-485 2-213 (217)
45 2pl2_A Hypothetical conserved 98.4 3.2E-06 1.1E-10 85.0 15.5 198 190-449 4-212 (217)
46 3u4t_A TPR repeat-containing p 98.4 7.6E-06 2.6E-10 83.9 18.5 232 194-486 6-250 (272)
47 3u4t_A TPR repeat-containing p 98.4 1.2E-05 4.2E-10 82.3 18.6 228 159-452 12-251 (272)
48 3as5_A MAMA; tetratricopeptide 98.4 1.3E-05 4.5E-10 76.2 17.2 156 294-486 18-173 (186)
49 2fo7_A Synthetic consensus TPR 98.4 1.3E-05 4.3E-10 71.7 16.1 128 356-486 5-132 (136)
50 1ouv_A Conserved hypothetical 98.3 7E-05 2.4E-09 77.3 23.4 217 160-452 16-252 (273)
51 3ro2_A PINS homolog, G-protein 98.3 3.4E-06 1.2E-10 88.2 13.5 274 159-486 14-332 (338)
52 2ond_A Cleavage stimulation fa 98.3 5.1E-05 1.7E-09 80.4 21.2 219 167-452 33-271 (308)
53 3sf4_A G-protein-signaling mod 98.3 6.7E-06 2.3E-10 89.2 14.3 266 188-485 6-335 (406)
54 2ooe_A Cleavage stimulation fa 98.2 9.4E-05 3.2E-09 84.6 23.8 313 161-507 23-441 (530)
55 2h6f_A Protein farnesyltransfe 98.2 5.2E-05 1.8E-09 83.6 20.8 231 192-486 98-348 (382)
56 3edt_B KLC 2, kinesin light ch 98.2 1.3E-05 4.3E-10 81.9 14.6 131 356-486 131-281 (283)
57 3nf1_A KLC 1, kinesin light ch 98.2 1.5E-05 5.3E-10 82.8 15.3 239 159-450 36-306 (311)
58 4a1s_A PINS, partner of inscut 98.2 5.4E-06 1.8E-10 90.7 11.8 274 159-486 57-372 (411)
59 3as5_A MAMA; tetratricopeptide 98.1 5.6E-05 1.9E-09 71.7 16.4 163 228-451 10-173 (186)
60 1xi4_A Clathrin heavy chain; a 98.1 0.00012 4.3E-09 90.5 22.2 242 159-484 1058-1307(1630)
61 2xm6_A Protein corresponding t 98.1 0.00063 2.1E-08 76.9 26.8 113 365-486 272-396 (490)
62 4a1s_A PINS, partner of inscut 98.1 1.8E-05 6.2E-10 86.5 13.3 245 192-486 49-332 (411)
63 2xm6_A Protein corresponding t 98.1 0.001 3.6E-08 75.1 27.9 245 163-486 92-360 (490)
64 2fo7_A Synthetic consensus TPR 98.1 3.9E-05 1.3E-09 68.4 12.7 123 294-452 11-133 (136)
65 3ro2_A PINS homolog, G-protein 98.1 4.1E-05 1.4E-09 79.9 14.7 244 193-486 7-292 (338)
66 4abn_A Tetratricopeptide repea 98.1 4.3E-05 1.5E-09 86.7 15.7 212 207-483 84-318 (474)
67 3vtx_A MAMA; tetratricopeptide 98.0 0.0002 6.8E-09 68.9 17.6 164 280-486 7-170 (184)
68 2ooe_A Cleavage stimulation fa 98.0 0.00032 1.1E-08 80.2 21.7 269 164-486 192-492 (530)
69 3vtx_A MAMA; tetratricopeptide 97.9 0.0011 3.8E-08 63.6 20.2 166 191-451 5-170 (184)
70 1qqe_A Vesicular transport pro 97.9 0.00043 1.5E-08 72.7 18.5 127 356-484 121-267 (292)
71 2h6f_A Protein farnesyltransfe 97.9 0.00054 1.8E-08 75.4 20.0 237 159-467 106-363 (382)
72 1hz4_A MALT regulatory protein 97.8 0.0013 4.5E-08 70.8 22.3 273 160-485 24-321 (373)
73 3sf4_A G-protein-signaling mod 97.8 3.5E-05 1.2E-09 83.4 9.1 279 159-473 18-363 (406)
74 3ulq_A Response regulator aspa 97.8 0.00023 8E-09 77.4 15.5 235 199-485 111-367 (383)
75 1hz4_A MALT regulatory protein 97.8 0.0009 3.1E-08 72.1 19.9 236 199-486 22-282 (373)
76 4g1t_A Interferon-induced prot 97.8 0.0011 3.9E-08 73.6 21.2 293 160-486 61-401 (472)
77 1xi4_A Clathrin heavy chain; a 97.8 0.0032 1.1E-07 78.3 25.7 246 159-481 1085-1340(1630)
78 4abn_A Tetratricopeptide repea 97.7 0.00054 1.9E-08 77.5 17.7 164 277-486 101-287 (474)
79 3edt_B KLC 2, kinesin light ch 97.7 9.4E-05 3.2E-09 75.3 9.5 131 356-486 47-198 (283)
80 4i17_A Hypothetical protein; T 97.6 0.0017 5.8E-08 64.7 17.5 142 294-473 17-169 (228)
81 4g1t_A Interferon-induced prot 97.6 0.0028 9.7E-08 70.3 20.7 265 192-493 52-368 (472)
82 2ifu_A Gamma-SNAP; membrane fu 97.6 0.0027 9.3E-08 67.0 18.9 119 356-479 120-254 (307)
83 4gyw_A UDP-N-acetylglucosamine 97.6 0.00098 3.4E-08 79.5 17.0 162 279-485 10-173 (723)
84 3mv2_B Coatomer subunit epsilo 97.5 0.0036 1.2E-07 66.5 19.1 125 356-486 140-282 (310)
85 3q15_A PSP28, response regulat 97.4 0.0046 1.6E-07 67.0 18.7 126 356-485 226-364 (378)
86 1na0_A Designed protein CTPR3; 97.4 0.0036 1.2E-07 54.6 14.7 91 358-450 15-105 (125)
87 4i17_A Hypothetical protein; T 97.4 0.0084 2.9E-07 59.5 19.1 194 190-486 6-209 (228)
88 3mv2_B Coatomer subunit epsilo 97.4 0.0013 4.4E-08 69.9 13.5 126 356-485 104-239 (310)
89 2vsy_A XCC0866; transferase, g 97.4 0.0025 8.6E-08 73.4 16.7 128 356-486 27-157 (568)
90 1hh8_A P67PHOX, NCF-2, neutrop 97.3 0.0056 1.9E-07 59.8 16.4 125 357-486 11-150 (213)
91 3ulq_A Response regulator aspa 97.3 0.0014 4.6E-08 71.3 12.1 235 159-450 112-367 (383)
92 1na0_A Designed protein CTPR3; 97.2 0.0078 2.7E-07 52.4 14.7 98 387-486 9-106 (125)
93 1a17_A Serine/threonine protei 97.2 0.0073 2.5E-07 56.0 15.3 127 356-485 17-145 (166)
94 4gyw_A UDP-N-acetylglucosamine 97.2 0.0037 1.3E-07 74.5 16.1 162 191-450 9-173 (723)
95 3qky_A Outer membrane assembly 97.2 0.0078 2.7E-07 61.3 16.2 158 294-486 25-224 (261)
96 1qqe_A Vesicular transport pro 97.2 0.0063 2.1E-07 63.6 15.6 131 356-486 81-228 (292)
97 2vyi_A SGTA protein; chaperone 97.1 0.011 3.6E-07 52.0 14.5 114 356-472 16-129 (131)
98 2ifu_A Gamma-SNAP; membrane fu 97.1 0.0072 2.5E-07 63.7 15.0 128 356-484 80-222 (307)
99 1hh8_A P67PHOX, NCF-2, neutrop 97.0 0.0092 3.1E-07 58.3 14.7 121 294-452 16-151 (213)
100 3u3w_A Transcriptional activat 97.0 0.014 4.7E-07 60.9 16.7 163 294-485 85-265 (293)
101 2yhc_A BAMD, UPF0169 lipoprote 97.0 0.016 5.4E-07 57.9 16.3 158 294-486 14-213 (225)
102 2r5s_A Uncharacterized protein 97.0 0.0052 1.8E-07 58.8 12.0 126 356-485 44-172 (176)
103 2e2e_A Formate-dependent nitri 96.9 0.0055 1.9E-07 58.3 11.6 122 362-486 20-144 (177)
104 1elr_A TPR2A-domain of HOP; HO 96.9 0.012 4.1E-07 51.7 12.4 97 389-486 6-108 (131)
105 2yhc_A BAMD, UPF0169 lipoprote 96.8 0.07 2.4E-06 53.0 19.5 87 362-452 106-214 (225)
106 3qky_A Outer membrane assembly 96.8 0.02 6.8E-07 58.2 15.7 88 365-457 110-228 (261)
107 2kck_A TPR repeat; tetratricop 96.8 0.0069 2.4E-07 51.8 10.3 95 389-486 8-106 (112)
108 2lni_A Stress-induced-phosphop 96.8 0.0098 3.4E-07 52.7 11.5 93 356-450 20-112 (133)
109 3gw4_A Uncharacterized protein 96.7 0.0046 1.6E-07 59.7 9.5 131 356-486 30-176 (203)
110 3u3w_A Transcriptional activat 96.7 0.04 1.4E-06 57.2 17.3 94 356-449 159-264 (293)
111 2kck_A TPR repeat; tetratricop 96.7 0.023 7.9E-07 48.4 12.7 95 356-452 10-107 (112)
112 2pzi_A Probable serine/threoni 96.7 0.018 6.3E-07 68.0 16.0 126 356-486 437-563 (681)
113 1elr_A TPR2A-domain of HOP; HO 96.7 0.019 6.5E-07 50.4 12.5 108 356-466 8-121 (131)
114 3urz_A Uncharacterized protein 96.7 0.011 3.8E-07 58.4 11.7 174 294-494 14-192 (208)
115 4e6h_A MRNA 3'-END-processing 96.6 0.081 2.8E-06 62.4 20.9 144 356-503 438-585 (679)
116 1elw_A TPR1-domain of HOP; HOP 96.6 0.049 1.7E-06 46.6 14.5 98 387-486 4-101 (118)
117 2qfc_A PLCR protein; TPR, HTH, 96.6 0.043 1.5E-06 57.0 16.4 163 294-484 85-264 (293)
118 2lni_A Stress-induced-phosphop 96.6 0.023 8E-07 50.1 12.2 101 384-486 13-113 (133)
119 3qou_A Protein YBBN; thioredox 96.6 0.009 3.1E-07 62.4 10.8 123 360-486 125-248 (287)
120 4ga2_A E3 SUMO-protein ligase 96.5 0.011 3.6E-07 55.3 10.1 118 363-486 8-129 (150)
121 2vsy_A XCC0866; transferase, g 96.5 0.034 1.2E-06 63.8 16.3 118 365-486 2-120 (568)
122 1elw_A TPR1-domain of HOP; HOP 96.5 0.053 1.8E-06 46.4 13.8 95 356-452 8-102 (118)
123 4gco_A Protein STI-1; structur 96.5 0.026 8.9E-07 51.0 12.2 89 360-450 21-109 (126)
124 2e2e_A Formate-dependent nitri 96.5 0.009 3.1E-07 56.8 9.4 123 294-452 20-145 (177)
125 2vyi_A SGTA protein; chaperone 96.5 0.055 1.9E-06 47.2 14.1 99 386-486 11-109 (131)
126 3q15_A PSP28, response regulat 96.5 0.056 1.9E-06 58.3 16.9 127 356-482 186-328 (378)
127 1p5q_A FKBP52, FK506-binding p 96.4 0.04 1.4E-06 58.9 15.4 127 356-485 151-293 (336)
128 4ga2_A E3 SUMO-protein ligase 96.4 0.018 6E-07 53.7 11.0 112 356-472 35-149 (150)
129 3gyz_A Chaperone protein IPGC; 96.4 0.039 1.3E-06 51.9 13.4 92 358-451 42-133 (151)
130 3q49_B STIP1 homology and U bo 96.3 0.063 2.1E-06 48.0 13.7 100 385-486 7-106 (137)
131 2qfc_A PLCR protein; TPR, HTH, 96.3 0.16 5.6E-06 52.5 18.6 94 356-449 159-264 (293)
132 2xev_A YBGF; tetratricopeptide 96.3 0.09 3.1E-06 46.4 14.3 90 393-486 8-105 (129)
133 3gyz_A Chaperone protein IPGC; 96.3 0.058 2E-06 50.7 13.6 102 386-493 35-138 (151)
134 2dba_A Smooth muscle cell asso 96.2 0.1 3.5E-06 46.9 14.8 98 386-486 27-128 (148)
135 3gw4_A Uncharacterized protein 96.2 0.061 2.1E-06 51.5 13.8 95 356-450 70-175 (203)
136 4gco_A Protein STI-1; structur 96.2 0.09 3.1E-06 47.3 13.9 96 389-486 15-110 (126)
137 3rjv_A Putative SEL1 repeat pr 96.1 0.15 5.2E-06 50.2 16.3 115 367-486 68-197 (212)
138 1a17_A Serine/threonine protei 96.1 0.14 4.8E-06 47.0 15.2 97 388-486 14-110 (166)
139 2fbn_A 70 kDa peptidylprolyl i 96.1 0.034 1.2E-06 54.0 11.1 119 356-477 42-176 (198)
140 3upv_A Heat shock protein STI1 96.0 0.09 3.1E-06 46.5 13.1 90 359-450 11-100 (126)
141 3ro3_A PINS homolog, G-protein 96.0 0.019 6.5E-07 52.2 8.7 130 356-485 13-157 (164)
142 2pzi_A Probable serine/threoni 96.0 0.017 5.8E-07 68.3 10.5 173 248-472 403-583 (681)
143 3rjv_A Putative SEL1 repeat pr 96.0 0.16 5.5E-06 50.0 16.2 122 356-486 22-158 (212)
144 3urz_A Uncharacterized protein 96.0 0.26 8.8E-06 48.3 17.6 130 294-464 64-197 (208)
145 3qou_A Protein YBBN; thioredox 96.0 0.062 2.1E-06 55.9 13.6 120 385-510 115-238 (287)
146 2dba_A Smooth muscle cell asso 96.0 0.1 3.5E-06 46.9 13.4 94 356-452 32-129 (148)
147 2vgx_A Chaperone SYCD; alterna 96.0 0.025 8.6E-07 52.6 9.4 99 386-486 20-118 (148)
148 3q49_B STIP1 homology and U bo 96.0 0.066 2.3E-06 47.8 11.9 94 356-451 13-106 (137)
149 3sz7_A HSC70 cochaperone (SGT) 95.9 0.073 2.5E-06 49.7 12.6 99 386-486 10-108 (164)
150 3upv_A Heat shock protein STI1 95.9 0.094 3.2E-06 46.4 12.6 98 387-486 4-101 (126)
151 2xcb_A PCRH, regulatory protei 95.9 0.078 2.7E-06 48.4 12.3 91 393-485 24-114 (142)
152 4gcn_A Protein STI-1; structur 95.9 0.068 2.3E-06 48.1 11.5 52 362-414 18-69 (127)
153 4f3v_A ESX-1 secretion system 95.9 0.059 2E-06 56.3 12.4 128 357-491 107-240 (282)
154 2vgx_A Chaperone SYCD; alterna 95.8 0.091 3.1E-06 48.7 12.5 94 356-451 25-118 (148)
155 2xcb_A PCRH, regulatory protei 95.8 0.086 2.9E-06 48.1 12.1 92 358-451 24-115 (142)
156 3sz7_A HSC70 cochaperone (SGT) 95.8 0.14 4.7E-06 47.8 13.8 94 356-451 15-108 (164)
157 3e4b_A ALGK; tetratricopeptide 95.8 0.38 1.3E-05 53.5 19.6 120 356-484 180-314 (452)
158 2r5s_A Uncharacterized protein 95.7 0.034 1.2E-06 52.9 9.2 127 357-491 11-140 (176)
159 4gcn_A Protein STI-1; structur 95.6 0.11 3.7E-06 46.8 11.8 108 388-499 9-123 (127)
160 4b4t_Q 26S proteasome regulato 95.5 0.51 1.7E-05 51.1 19.3 122 364-485 107-244 (434)
161 3k9i_A BH0479 protein; putativ 95.5 0.018 6.1E-07 50.9 6.0 86 365-451 3-90 (117)
162 2xev_A YBGF; tetratricopeptide 95.4 0.21 7E-06 43.9 12.9 96 358-458 8-110 (129)
163 4b4t_Q 26S proteasome regulato 95.4 0.16 5.5E-06 55.2 14.7 168 294-485 14-203 (434)
164 4e6h_A MRNA 3'-END-processing 95.4 0.28 9.6E-06 57.8 17.3 99 366-467 484-584 (679)
165 3dra_A Protein farnesyltransfe 95.3 1.4 4.7E-05 46.5 20.6 219 206-486 48-287 (306)
166 1wao_1 Serine/threonine protei 95.2 0.071 2.4E-06 60.1 11.1 118 360-481 14-134 (477)
167 1p5q_A FKBP52, FK506-binding p 95.1 0.1 3.5E-06 55.7 11.5 142 280-449 149-292 (336)
168 1hxi_A PEX5, peroxisome target 95.1 0.11 3.9E-06 46.2 10.0 89 359-450 24-113 (121)
169 3e4b_A ALGK; tetratricopeptide 94.9 0.63 2.1E-05 51.7 17.8 226 193-486 143-387 (452)
170 1hxi_A PEX5, peroxisome target 94.8 0.21 7.3E-06 44.4 10.9 93 390-486 20-114 (121)
171 1wao_1 Serine/threonine protei 94.7 0.21 7.1E-06 56.2 13.1 115 294-446 16-134 (477)
172 3ro3_A PINS homolog, G-protein 94.5 0.054 1.8E-06 49.1 6.3 128 294-450 19-157 (164)
173 3n71_A Histone lysine methyltr 94.4 0.12 4.2E-06 58.4 10.3 126 361-486 318-464 (490)
174 3k9i_A BH0479 protein; putativ 94.3 0.058 2E-06 47.5 6.0 87 399-486 2-90 (117)
175 2c2l_A CHIP, carboxy terminus 94.1 0.5 1.7E-05 48.8 13.4 90 358-450 10-100 (281)
176 3rkv_A Putative peptidylprolyl 94.1 0.28 9.5E-06 45.5 10.5 93 357-450 16-125 (162)
177 3dra_A Protein farnesyltransfe 94.0 1.6 5.4E-05 46.0 17.3 227 160-450 43-286 (306)
178 4f3v_A ESX-1 secretion system 94.0 0.21 7.2E-06 52.1 10.2 132 294-463 112-247 (282)
179 1kt0_A FKBP51, 51 kDa FK506-bi 93.9 0.42 1.4E-05 53.3 13.3 126 356-484 272-413 (457)
180 2fbn_A 70 kDa peptidylprolyl i 93.9 1.2 4.1E-05 42.7 15.0 124 361-486 13-151 (198)
181 1klx_A Cysteine rich protein B 93.5 0.77 2.6E-05 41.8 12.2 113 363-486 6-126 (138)
182 1ihg_A Cyclophilin 40; ppiase 93.4 0.38 1.3E-05 52.1 11.6 117 356-476 227-360 (370)
183 2c2l_A CHIP, carboxy terminus 93.3 0.46 1.6E-05 49.0 11.5 98 386-486 3-101 (281)
184 2l6j_A TPR repeat-containing p 93.1 0.37 1.3E-05 40.8 8.8 64 387-451 4-67 (111)
185 2kat_A Uncharacterized protein 93.1 0.36 1.2E-05 41.8 8.8 79 370-450 3-81 (115)
186 3q7a_A Farnesyltransferase alp 92.0 7.6 0.00026 41.5 19.1 233 205-495 68-340 (349)
187 3rkv_A Putative peptidylprolyl 91.8 2.1 7.3E-05 39.3 13.0 98 388-486 12-126 (162)
188 3n71_A Histone lysine methyltr 91.7 0.56 1.9E-05 53.0 10.2 95 356-450 355-463 (490)
189 2if4_A ATFKBP42; FKBP-like, al 91.3 0.33 1.1E-05 51.8 7.5 126 356-486 183-328 (338)
190 1klx_A Cysteine rich protein B 91.3 3.3 0.00011 37.5 13.4 115 294-452 5-127 (138)
191 1na3_A Designed protein CTPR2; 91.2 1.7 5.9E-05 35.0 10.5 64 387-451 9-72 (91)
192 3mkq_A Coatomer beta'-subunit; 90.5 0.94 3.2E-05 53.6 11.2 104 360-484 660-763 (814)
193 1kt0_A FKBP51, 51 kDa FK506-bi 90.2 3.4 0.00012 45.8 14.8 97 387-486 268-380 (457)
194 2kat_A Uncharacterized protein 90.0 1.4 4.7E-05 38.0 9.1 80 405-486 3-82 (115)
195 3ma5_A Tetratricopeptide repea 89.8 1.4 4.9E-05 37.2 8.9 64 386-450 6-69 (100)
196 2l6j_A TPR repeat-containing p 89.7 0.63 2.2E-05 39.3 6.6 64 356-422 8-71 (111)
197 3q7a_A Farnesyltransferase alp 89.7 7.7 0.00026 41.5 16.4 224 160-450 64-330 (349)
198 1ihg_A Cyclophilin 40; ppiase 89.3 3 0.0001 44.9 13.1 97 389-486 225-336 (370)
199 3ly7_A Transcriptional activat 88.4 6.8 0.00023 42.2 14.8 140 356-501 198-352 (372)
200 1na3_A Designed protein CTPR2; 88.2 3.3 0.00011 33.2 9.8 60 356-416 13-72 (91)
201 2hr2_A Hypothetical protein; a 87.7 6.9 0.00024 36.9 12.7 105 358-462 17-147 (159)
202 3qwp_A SET and MYND domain-con 87.1 1.5 5.2E-05 48.4 9.1 84 399-482 299-396 (429)
203 2uy1_A Cleavage stimulation fa 86.3 9.6 0.00033 42.7 15.3 121 356-486 290-413 (493)
204 3qww_A SET and MYND domain-con 86.1 2.4 8E-05 47.0 9.9 83 401-483 312-408 (433)
205 2hr2_A Hypothetical protein; a 86.0 8.2 0.00028 36.4 12.2 96 389-486 13-131 (159)
206 3ma5_A Tetratricopeptide repea 86.0 1.8 6.3E-05 36.5 7.2 59 356-415 11-69 (100)
207 2if4_A ATFKBP42; FKBP-like, al 85.9 2.3 8E-05 45.0 9.5 95 389-486 181-293 (338)
208 3mkq_B Coatomer subunit alpha; 85.5 7.9 0.00027 37.1 11.9 104 359-483 12-115 (177)
209 2uy1_A Cleavage stimulation fa 85.0 6.6 0.00023 44.0 13.2 89 387-483 286-380 (493)
210 3qwp_A SET and MYND domain-con 84.8 2 6.8E-05 47.5 8.5 93 358-450 293-399 (429)
211 3qww_A SET and MYND domain-con 83.3 3.5 0.00012 45.6 9.7 87 364-450 310-410 (433)
212 2kc7_A BFR218_protein; tetratr 83.0 4.3 0.00015 33.4 8.1 56 360-416 8-64 (99)
213 3mkq_A Coatomer beta'-subunit; 81.6 11 0.00038 44.2 13.8 77 356-447 685-761 (814)
214 1zu2_A Mitochondrial import re 80.1 4.5 0.00015 38.1 7.7 95 361-460 11-127 (158)
215 2kc7_A BFR218_protein; tetratr 79.3 7.3 0.00025 31.9 8.3 55 395-451 8-64 (99)
216 1wy6_A Hypothetical protein ST 77.8 15 0.00053 33.7 9.9 62 356-418 95-156 (172)
217 1wy6_A Hypothetical protein ST 77.1 45 0.0015 30.6 14.0 118 365-486 20-154 (172)
218 1k1a_A B-cell lymphoma 3-encod 76.8 9.9 0.00034 37.0 9.7 30 196-225 11-40 (241)
219 1pc2_A Mitochondria fission pr 74.2 23 0.00078 33.0 10.6 81 367-450 13-99 (152)
220 3dss_A Geranylgeranyl transfer 74.0 48 0.0016 34.9 14.6 48 368-416 126-174 (331)
221 3dss_A Geranylgeranyl transfer 68.8 1.2E+02 0.0041 31.9 18.0 228 200-486 38-304 (331)
222 3jxi_A Vanilloid receptor-rela 66.9 6.1 0.00021 39.3 5.5 31 196-226 7-37 (260)
223 3bee_A Putative YFRE protein; 66.5 32 0.0011 28.7 9.2 64 386-451 5-72 (93)
224 1pc2_A Mitochondria fission pr 65.7 36 0.0012 31.6 10.0 96 403-502 14-114 (152)
225 3ly7_A Transcriptional activat 65.4 20 0.00069 38.5 9.4 74 384-461 274-347 (372)
226 1dce_A Protein (RAB geranylger 65.2 69 0.0024 36.3 14.5 132 368-504 89-238 (567)
227 2ff4_A Probable regulatory pro 64.3 20 0.00067 38.8 9.3 56 392-448 176-231 (388)
228 1wdy_A 2-5A-dependent ribonucl 63.1 45 0.0015 32.8 11.3 113 357-477 150-270 (285)
229 3mkq_B Coatomer subunit alpha; 63.0 39 0.0013 32.3 9.9 104 356-483 38-141 (177)
230 2ff4_A Probable regulatory pro 62.7 15 0.0005 39.8 7.9 59 356-415 175-233 (388)
231 2v5f_A Prolyl 4-hydroxylase su 60.6 37 0.0013 28.5 8.7 22 392-413 10-31 (104)
232 4gns_B Protein CSD3, chitin bi 58.2 77 0.0026 37.4 13.3 127 356-484 248-398 (754)
233 1k1a_A B-cell lymphoma 3-encod 57.9 15 0.00051 35.7 6.4 148 294-480 16-170 (241)
234 4h7y_A Dual specificity protei 55.0 1.3E+02 0.0043 28.1 11.4 104 386-493 12-128 (161)
235 1zu2_A Mitochondrial import re 54.7 17 0.00058 34.1 5.7 76 367-451 61-147 (158)
236 3aji_A 26S proteasome non-ATPa 54.0 46 0.0016 31.8 9.2 20 197-216 9-28 (231)
237 3kea_A K1L; tropism, ANK repea 53.0 58 0.002 32.9 10.1 94 357-459 131-225 (285)
238 1v54_E Cytochrome C oxidase po 52.8 82 0.0028 27.2 8.9 63 367-430 25-87 (109)
239 3u64_A Protein TP_0956; tetrat 51.5 75 0.0026 32.9 10.4 105 368-484 179-296 (301)
240 1dce_A Protein (RAB geranylger 45.6 1.9E+02 0.0063 32.7 13.7 119 365-486 42-173 (567)
241 2v5f_A Prolyl 4-hydroxylase su 45.4 1.3E+02 0.0045 24.9 9.7 61 426-486 9-75 (104)
242 4fhn_B Nucleoporin NUP120; pro 45.2 1.4E+02 0.0047 37.0 13.5 143 357-507 817-987 (1139)
243 1v54_E Cytochrome C oxidase po 44.5 91 0.0031 26.9 8.0 50 437-486 25-74 (109)
244 3utm_A Tankyrase-1; tankyrase, 43.8 1.9E+02 0.0065 29.1 12.6 19 197-215 27-45 (351)
245 3bee_A Putative YFRE protein; 43.4 1.4E+02 0.0047 24.6 9.8 64 421-486 5-72 (93)
246 2y69_E Cytochrome C oxidase su 41.8 1.3E+02 0.0045 27.4 8.9 63 367-430 68-130 (152)
247 3b7b_A Euchromatic histone-lys 41.0 50 0.0017 31.7 7.1 117 358-486 114-236 (237)
248 2d2s_A Exocyst complex compone 41.0 1.2E+02 0.0039 30.3 9.7 89 394-485 25-119 (235)
249 2d2s_A Exocyst complex compone 39.6 2.6E+02 0.0089 27.7 12.1 140 358-505 24-179 (235)
250 1wdy_A 2-5A-dependent ribonucl 38.8 1.4E+02 0.0047 29.1 10.2 117 357-481 107-240 (285)
251 2nsz_A Programmed cell death p 37.8 77 0.0026 28.3 7.1 24 356-379 11-34 (129)
252 1nzn_A CGI-135 protein, fissio 37.5 1.2E+02 0.004 27.2 8.1 91 358-450 7-102 (126)
253 2pnn_A Transient receptor pote 36.5 42 0.0014 33.3 5.8 28 196-223 15-42 (273)
254 3eu9_A Huntingtin-interacting 36.4 61 0.0021 30.9 6.9 19 464-482 214-232 (240)
255 3hra_A Ankyrin repeat family p 32.1 2.9E+02 0.01 25.1 11.0 114 358-480 75-198 (201)
256 3eu9_A Huntingtin-interacting 30.6 1.1E+02 0.0039 28.9 7.7 22 295-320 17-38 (240)
257 2nsz_A Programmed cell death p 30.6 1.2E+02 0.0041 27.0 7.2 97 389-486 9-111 (129)
258 2ion_A PDCD4, programmed cell 30.4 72 0.0025 29.5 5.8 24 356-379 13-36 (152)
259 3u64_A Protein TP_0956; tetrat 30.4 2.2E+02 0.0074 29.5 9.8 82 404-491 180-272 (301)
260 4b4t_R RPN7, 26S proteasome re 29.4 3.4E+02 0.012 29.2 12.1 104 356-461 135-247 (429)
261 2y69_E Cytochrome C oxidase su 29.4 2.1E+02 0.0073 26.0 8.3 50 437-486 68-117 (152)
262 1nzn_A CGI-135 protein, fissio 29.2 1.9E+02 0.0067 25.7 8.1 85 400-486 14-103 (126)
263 2rfa_A Transient receptor pote 29.1 2E+02 0.0068 27.2 9.2 59 357-419 123-183 (232)
264 1n11_A Ankyrin; clathrin, BAND 28.7 1.4E+02 0.0047 31.9 8.7 27 196-226 16-42 (437)
265 2rfa_A Transient receptor pote 28.3 1.3E+02 0.0044 28.6 7.6 119 357-484 77-221 (232)
266 2f8y_A Notch homolog 1, transl 27.9 2.4E+02 0.0081 26.4 9.5 26 196-225 27-52 (223)
267 4gns_B Protein CSD3, chitin bi 27.8 5.1E+02 0.018 30.3 13.7 52 360-413 345-397 (754)
268 2p58_C Putative type III secre 27.8 1.8E+02 0.006 25.1 7.0 78 367-452 22-99 (116)
269 2p58_C Putative type III secre 27.4 2E+02 0.0068 24.8 7.2 51 430-486 48-98 (116)
270 4b93_B Ankyrin repeat domain-c 27.4 3.8E+02 0.013 26.4 11.3 78 396-481 125-206 (269)
271 2ion_A PDCD4, programmed cell 26.1 97 0.0033 28.6 5.8 97 389-486 11-113 (152)
272 3twr_A Tankyrase-2; ankyrin re 26.1 65 0.0022 29.0 4.7 114 356-480 9-128 (165)
273 2f8y_A Notch homolog 1, transl 25.5 3.1E+02 0.011 25.5 9.9 24 294-321 32-55 (223)
274 4h7y_A Dual specificity protei 25.2 1.6E+02 0.0053 27.5 6.8 106 357-465 18-136 (161)
275 3t8k_A Uncharacterized protein 24.7 2E+02 0.007 26.7 8.1 27 295-321 46-72 (186)
276 4fhn_B Nucleoporin NUP120; pro 24.6 4.2E+02 0.014 32.6 13.0 84 356-441 903-990 (1139)
277 2fe3_A Peroxide operon regulat 24.6 2.2E+02 0.0075 25.6 8.0 62 445-507 10-72 (145)
278 2uwj_G Type III export protein 24.3 2E+02 0.0067 24.8 6.6 78 367-452 21-98 (115)
279 3kea_A K1L; tropism, ANK repea 24.2 1.5E+02 0.005 29.7 7.4 114 356-482 63-183 (285)
280 2uwj_G Type III export protein 24.0 1.7E+02 0.0059 25.2 6.2 51 430-486 47-97 (115)
281 1zbp_A Hypothetical protein VP 23.4 1.4E+02 0.0047 30.5 6.7 116 360-486 5-129 (273)
282 3ix7_A Uncharacterized protein 23.3 91 0.0031 28.2 4.9 52 664-715 62-116 (134)
283 1bd8_A P19INK4D CDK4/6 inhibit 22.8 75 0.0026 28.1 4.4 80 358-447 39-123 (156)
284 2fu4_A Ferric uptake regulatio 22.0 2.3E+02 0.0078 22.4 6.8 60 446-506 6-67 (83)
285 3eyy_A Putative iron uptake re 21.4 1.9E+02 0.0065 26.1 6.8 60 445-506 7-67 (145)
286 2xig_A Ferric uptake regulatio 21.1 2.3E+02 0.008 25.6 7.4 62 444-506 14-76 (150)
287 3jxi_A Vanilloid receptor-rela 20.8 50 0.0017 32.4 2.9 121 356-481 6-161 (260)
288 3eiq_C Programmed cell death p 20.8 1.3E+02 0.0045 31.9 6.3 70 389-459 219-290 (358)
289 3aji_A 26S proteasome non-ATPa 20.6 1.1E+02 0.0038 29.0 5.4 117 356-481 7-127 (231)
290 4b4t_R RPN7, 26S proteasome re 20.5 1.9E+02 0.0064 31.4 7.7 96 389-486 133-237 (429)
291 1mzb_A Ferric uptake regulatio 20.5 2.3E+02 0.0078 25.2 7.1 60 446-506 7-68 (136)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5.2e-100 Score=877.91 Aligned_cols=476 Identities=49% Similarity=0.875 Sum_probs=450.5
Q ss_pred hhhhccCCCC--CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccc
Q 003768 267 TELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRK 344 (796)
Q Consensus 267 ~em~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty 344 (796)
+++.++ ++. +...++.+|++ ||+.|++++|.++|++|.+.|+.||.+||
T Consensus 14 ~~~~~k-~~~~spe~~l~~~id~------c~k~G~~~~A~~lf~~M~~~Gv~pd~~ty---------------------- 64 (501)
T 4g26_A 14 RKAKKK-AIQQSPEALLKQKLDM------CSKKGDVLEALRLYDEARRNGVQLSQYHY---------------------- 64 (501)
T ss_dssp -----------CHHHHHHHHHHH------TTTSCCHHHHHHHHHHHHHHTCCCCHHHH----------------------
T ss_pred HHHHHh-cccCCCHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHcCCCCCHhHH----------------------
Confidence 345544 554 66679999999 99999999999999999999999999999
Q ss_pred cccccccccchhhHHHHHHhccC---------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003768 345 KDWSIDNQDADEIRLSEDAKKYA---------FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (796)
Q Consensus 345 ~~~~~~~~~~~n~lI~~~~k~g~---------~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (796)
|+||++|++.+. +++|+++|++|...|+.||.+|||+||++|++.|++++|+++|++|.+
T Consensus 65 -----------n~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 133 (501)
T 4g26_A 65 -----------NVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA 133 (501)
T ss_dssp -----------HHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999997664 799999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH
Q 003768 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495 (796)
Q Consensus 416 ~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~ 495 (796)
.|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||++||++|++.|++++|.++|++|++.++.|++.||
T Consensus 134 ~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~ 213 (501)
T 4g26_A 134 FGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF 213 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred cCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888899
Q ss_pred HHHHHHHhchHHHHhccccchhhHHHHHhhhcCCCccccccCCCceeEEEEeeccCCCcccccccccccccCCHHHHHHH
Q 003768 496 DVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKF 575 (796)
Q Consensus 496 ~~I~~~~~~~~~~~a~~~~~~~~~v~ea~~~~g~~~~~m~~~g~~p~~v~~t~vl~~G~C~~c~~~L~~i~l~~~e~~~l 575 (796)
++|..||.+..+...+...|+...+.+++...|++||+++|.|...|.+..+.+...|.|.+|+..|..++|+++|++.|
T Consensus 214 ~~l~~~F~s~~a~~~g~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~w~v~~t~v~~~G~C~~c~~~L~~i~l~~~e~~~l 293 (501)
T 4g26_A 214 DMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETF 293 (501)
T ss_dssp HHHHHHHHSHHHHTCCBSCCCHHHHHHHHHHHTSSCCCSCCCBCSCEEEEEECBCTTSBBTTTCCBCCCCCCCHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhhhhhhhhhhhhHhccCcccccccccccCceeEEeeecccCCCccchhhhhccccCCHHHHHHH
Confidence 99999999988888898899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHhhcCCcceeeecceeecccCCCCChhhHHHHHHHHHhhCCCCCceEEEeccccccC
Q 003768 576 AESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITG 655 (796)
Q Consensus 576 ~~~i~~~a~~~~~~~~~~~F~~~l~~~~pyD~VIDG~nva~~~~~~~~~~~l~~vv~~~~~~~~~~~~~livl~~~~~~~ 655 (796)
.+.|.++++.++.+++|+.|++|+++++|||+||||+|||||++++|++.||..||+.+++..+.+++||||+|++|+.+
T Consensus 294 ~~~i~~~~~~~~~~~~~~~F~~~l~~~~p~d~vIDG~NV~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~l~~~~~~~ 373 (501)
T 4g26_A 294 AASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNG 373 (501)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHTSCCCSEEEEHHHHHHTTCSSCCHHHHHHHHHHHHHHSTTCCCCEEEEEHHHHTS
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhcCCchhhhccchhhccccccccHHHHHHHHHHHHHHhhccCCcEEEeehhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999998888999999999999998
Q ss_pred CCCCChhhHHHHHHHHHcCceEecCCCCCccHHHHHHHHhcCcEEEeCCccccccccccCCchhhhHhhhcEEEEEeec-
Q 003768 656 HKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSD- 734 (796)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~t~~~s~DD~~~lyaa~~~~~~~vsnD~mRdH~~~ll~~~~F~rW~~~hqv~~~~~~- 734 (796)
..+..|.+++++++|++++.+|+||++||||||||||||+.+|+|||||+||||+|+|+++++|+|||++|||+|++++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~t~~~s~DD~~~lyAal~~~~~~vsnD~mRdH~f~l~~~~~F~rW~~~hq~~~~~~~~ 453 (501)
T 4g26_A 374 GPATYPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVTRE 453 (501)
T ss_dssp GGGSSHHHHHHHHHHHHTTCEEEECTTCCHHHHHHHHHHHHTCEEECCCCCCSGGGGGGTTTHHHHHHHHHEEEEEEETT
T ss_pred cccCCHHHHHHHHHHHhcCeEEeCCCCCCchHHHHHHHHccCCEEEeccccccchhccCCcHHHHHHHhcCeEEEEecCC
Confidence 8888999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCeeecCCCCceeEEeeCCCceEecccCCCCCCCCCCceEEEEecCCc
Q 003768 735 AGPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANSH 783 (796)
Q Consensus 735 ~~~~~~~p~~y~~~~q~~~~~~WHiP~~~~~~~~~~~~~WlC~~~~~~~ 783 (796)
++++|++|+||+++||++++++|||||++++++|+| ++|||++|.+++
T Consensus 454 ~~~~~~~p~~~~~~~q~~~~~~WHiP~~~~~~~~~~-~~WlC~~r~~~~ 501 (501)
T 4g26_A 454 DGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDLQTS-RQWLCAKRSKTP 501 (501)
T ss_dssp TEEEEECCCSSCCSCEECTTSCEEEEBCCSCTTTSC-CCEEEEEECC--
T ss_pred CCceeccCCCCceeeeecCCCceEecccCCCCCCCC-CeeEeeccCCCC
Confidence 469999999999999999888999999999999995 999999998653
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=6.2e-33 Score=319.24 Aligned_cols=216 Identities=23% Similarity=0.275 Sum_probs=187.7
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccC
Q 003768 168 GQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPA 247 (796)
Q Consensus 168 ~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~ 247 (796)
.+..+..++.+++ ....|+ ..++.+|++|||.|++++|+++|++|.+.|++||.+|||+||++|+..
T Consensus 8 ~~e~L~~~~~~k~----~~~spe-~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~-------- 74 (501)
T 4g26_A 8 PSENLSRKAKKKA----IQQSPE-ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLA-------- 74 (501)
T ss_dssp --------------------CHH-HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTC--------
T ss_pred hHHHHHHHHHHhc----ccCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhC--------
Confidence 3555666663333 223455 678999999999999999999999999999999999999999999932
Q ss_pred CCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchh
Q 003768 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (796)
Q Consensus 248 k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~ 327 (796)
+... . .++.+.++.|.++|++|...|+.||.+||
T Consensus 75 --~~~~---------------------------------~------~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty----- 108 (501)
T 4g26_A 75 --EAAT---------------------------------E------SSPNPGLSRGFDIFKQMIVDKVVPNEATF----- 108 (501)
T ss_dssp --CCCS---------------------------------S------SSCCHHHHHHHHHHHHHHHTTCCCCHHHH-----
T ss_pred --Cchh---------------------------------h------hhhcchHHHHHHHHHHHHHhCCCCCHHHH-----
Confidence 2111 1 55677789999999999999999999999
Q ss_pred hhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003768 328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF 407 (796)
Q Consensus 328 ~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~ 407 (796)
|+||++|++.|++++|+++|++|.+.|+.||..|||+||.+||+.|++++|.
T Consensus 109 ----------------------------n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~ 160 (501)
T 4g26_A 109 ----------------------------TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY 160 (501)
T ss_dssp ----------------------------HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----------------------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003768 408 DMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (796)
Q Consensus 408 ~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~ 470 (796)
++|++|.+.|+.||..||++||.+||+.|++++|++++++|.+.|+.|+..||++|+..|+..
T Consensus 161 ~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 161 EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999864
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.86 E-value=4.8e-20 Score=214.44 Aligned_cols=306 Identities=11% Similarity=-0.027 Sum_probs=181.7
Q ss_pred chhhhhhhhhHhhhcCCcchHHHHHHHHHhcC---------CCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003768 149 KTVNREVDNQKMEQRTNDSGQYKVRGITDEKG---------SKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQR 219 (796)
Q Consensus 149 ~~~~~~l~~~~~~k~~~~~~A~~vf~~M~~~g---------~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~ 219 (796)
..++.... ...+.++.++|.++|+++.... ...+.+..++..+|+.++.+|.+.|++++|+++|++|.+
T Consensus 151 ~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (597)
T 2xpi_A 151 ACRYLAAF--CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM 228 (597)
T ss_dssp HHHHHHHH--HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHH--HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444 6778899999999999641111 001123455789999999999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHcc----------------------------ccCCcccCCCCChhhHHHHHhhhccCchhhhc
Q 003768 220 EGIKLGQYHYNVLLYLCSSA----------------------------AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (796)
Q Consensus 220 ~Gi~pd~~tyn~LL~a~~~~----------------------------~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~ 271 (796)
.+.. +...+..+...+... ......+.+.|++++|..+|. ++..
T Consensus 229 ~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~-------~~~~ 300 (597)
T 2xpi_A 229 VDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS-------SING 300 (597)
T ss_dssp HCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH-------TSTT
T ss_pred hCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH-------Hhhc
Confidence 6421 233333332111000 000112336677777777773 3433
Q ss_pred cCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCccee-----------------------------
Q 003768 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK----------------------------- 322 (796)
Q Consensus 272 ~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty----------------------------- 322 (796)
. -.+..+|+.++.+ |.+.|++++|..+|++|.+.+- .+..++
T Consensus 301 ~--~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 371 (597)
T 2xpi_A 301 L--EKSSDLLLCKADT------LFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371 (597)
T ss_dssp G--GGCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred C--CchHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc
Confidence 2 0256667777777 7777777777777777765541 122222
Q ss_pred -----c--------cchhhhHHhhhhcC----CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCC
Q 003768 323 -----L--------NSQLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM 385 (796)
Q Consensus 323 -----~--------~g~~~~A~~l~~~m----~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~p 385 (796)
. .|+.++|..+|+++ ..+..+| +.++..|.+.|++++|.++|++|...+ +.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 439 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAW-----------IGFAHSFAIEGEHDQAISAYTTAARLF-QG 439 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----------HHHHHHHHHHTCHHHHHHHHHHHHHTT-TT
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHhC-cc
Confidence 2 55555565555554 2233445 566666666666666666666665543 33
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCC--HHH
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPE--EPE 459 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~----gv~pd--~~t 459 (796)
+..+|+.++.+|.+.|++++|.++|++|.+.. ..+..+|+.+...|++.|+.++|.++|++|.+. +..|+ ..+
T Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 55566666666666666666666666665442 224556666666666666666666666666554 55555 556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 460 LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 460 y~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
|..|..+|.+.|++++|.++|+++.+.
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 666666666666666666666666554
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.85 E-value=1.5e-19 Score=210.27 Aligned_cols=310 Identities=8% Similarity=-0.069 Sum_probs=247.8
Q ss_pred chhhhhhhhhHhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003768 149 KTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYH 228 (796)
Q Consensus 149 ~~~~~~l~~~~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~t 228 (796)
..++..+. ...+.++.++|..+|++|.. ..|+..+|..++.+|.+.|++++|+.+|+.+.. ..++..+
T Consensus 85 ~~~~~~~~--~~~~~g~~~~A~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~ 152 (597)
T 2xpi_A 85 DYLRLWRH--DALMQQQYKCAAFVGEKVLD--------ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSAC 152 (597)
T ss_dssp HHHHHHHH--HHHHTTCHHHHHHHHHHHHH--------HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHH
T ss_pred HHHHHHHH--HHHHccCchHHHHHHHHHHh--------hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhH
Confidence 34455544 66788999999999999953 345668999999999999999999999998864 3789999
Q ss_pred HHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccC--------------CCC-CcchhhhcccCcccccc
Q 003768 229 YNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR--------------DMD-NNGQLDYGSSPMIDKLE 293 (796)
Q Consensus 229 yn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~--------------gv~-d~~tyn~LI~~~~~~~~ 293 (796)
++.++.+|. +.|++++|..+|+ ++.... +.+ +..+|+.++.+
T Consensus 153 ~~~l~~~~~----------~~g~~~~A~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------ 209 (597)
T 2xpi_A 153 RYLAAFCLV----------KLYDWQGALNLLG-------ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV------ 209 (597)
T ss_dssp HHHHHHHHH----------HTTCHHHHHHHHC-------SSCTTC----------CCCSSCCHHHHHHHHHHHH------
T ss_pred HHHHHHHHH----------HHhhHHHHHHHHh-------ccCCccccccccccccccccccchhHHHHHHHHHH------
Confidence 999999999 8999999999995 222221 233 57889999999
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcce----------------------------------------------ec-cch
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHM----------------------------------------------KL-NSQ 326 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~t----------------------------------------------y~-~g~ 326 (796)
|.+.|++++|.++|++|.+.+ |+... |. .|+
T Consensus 210 ~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 287 (597)
T 2xpi_A 210 YTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE 287 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcch
Confidence 999999999999999998865 43211 11 688
Q ss_pred hhhHHhhhhcC---CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003768 327 LLDGRSNLERG---PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG 403 (796)
Q Consensus 327 ~~~A~~l~~~m---~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~ 403 (796)
+++|..+|+++ .++..+| +.++.+|.+.|++++|.++|++|...+ +.+..+|+.++.+|.+.|+.
T Consensus 288 ~~~A~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 288 LRRAEDYLSSINGLEKSSDLL-----------LCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp HHHHHHHHHTSTTGGGCHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhhcCCchHHHH-----------HHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCH
Confidence 89999999998 3788888 999999999999999999999998765 34777888889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003768 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 404 ~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M 483 (796)
++|..++++|.+. ...+..+|+.+..+|++.|++++|.++|++|.+.. ..+..+|+.|+.+|.+.|++++|.++|++|
T Consensus 356 ~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 356 NKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999888754 33567788888888999999999999998887743 235778888889999999999999999888
Q ss_pred HhCCCCC-ChhHHHH-HHHHHhchHHHHhc
Q 003768 484 RTSVRKV-SPSTADV-IAKWFNSKEAARLG 511 (796)
Q Consensus 484 ~~~~~~~-~p~t~~~-I~~~~~~~~~~~a~ 511 (796)
... .+ .+.++.. +..+++.+...+|.
T Consensus 434 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 434 ARL--FQGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHT--TTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHh--CccchHHHHHHHHHHHHcCCHHHHH
Confidence 876 33 2335544 56666666655554
No 5
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=99.82 E-value=1.2e-20 Score=187.70 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=104.0
Q ss_pred CcceeeecceeecccCC--CCChhhHHHHHHHHHhhCCCCCc-eEEEeccccccC-CCCCChhhHHHHHHHHHcCceEec
Q 003768 604 PFEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKW-PLIVLHNRRITG-HKMDQPVNRALIEKWKNADALYAT 679 (796)
Q Consensus 604 pyD~VIDG~nva~~~~~--~~~~~~l~~vv~~~~~~~~~~~~-~livl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t 679 (796)
.--+||||+|||++..+ .|+..+|..+|++|++ .|+. ++|+++..+... .......+++++++|.+.+.|++|
T Consensus 24 lR~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yF~~---RGh~~V~VfvP~~r~~~~~~~~~~~d~~~L~~L~k~g~L~~T 100 (223)
T 3v33_A 24 LRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLE---RGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVFT 100 (223)
T ss_dssp BCCEEEEHHHHHHHSSSTTSEEHHHHHHHHHHHHT---TTCCCEEEEEEGGGGSCCCTTSCEESTHHHHHHHHTTCEEEE
T ss_pred CCeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHH---cCCCceEEEechhhhccccccCCCCcHHHHHHHHHCCCEEEC
Confidence 45689999999987655 6888999999999998 6776 456666555432 223346788999999999999999
Q ss_pred CCC--------CCccHHHHHHHHhcCcEEEeCCccccccccccCCchhhhHhhhcEEEEEee
Q 003768 680 PTG--------SNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFS 733 (796)
Q Consensus 680 ~~~--------s~DD~~~lyaa~~~~~~~vsnD~mRdH~~~ll~~~~F~rW~~~hqv~~~~~ 733 (796)
|++ ++||+|||++|...+++|||||+||||..+ ...|.+|.+.|+|.|+|.
T Consensus 101 Ps~~v~G~r~~sydD~~iL~~A~~~~g~IVSND~yRD~~~e---~p~~k~~Ie~rlI~ytFv 159 (223)
T 3v33_A 101 PSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGE---RQEWKRFIEERLLMYSFV 159 (223)
T ss_dssp CEEEETTEEEECCHHHHHHHHHHHTTCEEECSCCCHHHHTT---CHHHHHHHHHHEECCEEE
T ss_pred CCCCcCCccccccchHHHHHHHHHcCCEEEeCccHHHHHhh---CHHHHHHHHhCeeeEEEE
Confidence 998 899999999999999999999999999852 346888999999999986
No 6
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=99.80 E-value=4.4e-20 Score=179.97 Aligned_cols=131 Identities=19% Similarity=0.235 Sum_probs=107.0
Q ss_pred CcceeeecceeecccCC--CCChhhHHHHHHHHHhhCCCCCc-eEEEeccccccC-CCCCChhhHHHHHHHHHcCceEec
Q 003768 604 PFEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKW-PLIVLHNRRITG-HKMDQPVNRALIEKWKNADALYAT 679 (796)
Q Consensus 604 pyD~VIDG~nva~~~~~--~~~~~~l~~vv~~~~~~~~~~~~-~livl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t 679 (796)
.--+||||+|||++.++ .|++.+|..+|++|++ .|+. ++|+++..+... +......+++++++|.+.+.++.|
T Consensus 24 lR~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yf~~---rGh~~v~VfvP~~r~~~~~~~~~~~d~~~L~~L~~~g~l~~T 100 (185)
T 3v32_B 24 LRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLE---RGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVFT 100 (185)
T ss_dssp BCCEEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHH---TTCCCEEEEEEGGGGSCCCTTSCEECTHHHHHHHHTTCEEEE
T ss_pred CCeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHH---cCCCceEEEechHhhhcccccCCCCCHHHHHHHHHCCCEEEC
Confidence 45789999999988665 6899999999999999 6766 456666555432 223356788999999999999999
Q ss_pred CCC--------CCccHHHHHHHHhcCcEEEeCCccccccccccCCchhhhHhhhcEEEEEeecCCCeeecC
Q 003768 680 PTG--------SNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEFYMP 742 (796)
Q Consensus 680 ~~~--------s~DD~~~lyaa~~~~~~~vsnD~mRdH~~~ll~~~~F~rW~~~hqv~~~~~~~~~~~~~p 742 (796)
|.+ ++||+|||++|...+++|||||+||||..+ ...+.+|.+.|+|.|+|. +..|..|
T Consensus 101 Ps~~~~g~~~~~ydD~~il~~A~~~~g~IVSND~~rD~~~~---~p~~k~~Ie~rli~ytFv--~d~Fmp~ 166 (185)
T 3v32_B 101 PSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGE---RQEWKRFIEERLLMYSFV--NDKFMPP 166 (185)
T ss_dssp CCCC-------CCHHHHHHHHHHHTTCEEECSCCCHHHHHH---CHHHHHHHHHHEECCEEE--TTEEECC
T ss_pred CCcccCCCcccCccHHHHHHHHHHcCCEEEeCccHHHHHhh---CHHHHHHHHhCcceeEEE--CCEEcCC
Confidence 999 899999999999999999999999999863 235677779999999986 5556543
No 7
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=8.4e-20 Score=216.85 Aligned_cols=121 Identities=15% Similarity=-0.000 Sum_probs=112.6
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~---~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~ 432 (796)
|+||++||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|++.|+.||++|||+||.++
T Consensus 131 naLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~gl 210 (1134)
T 3spa_A 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCM 210 (1134)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 9999999999999999999998874 5899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 003768 433 CNNGDV-DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (796)
Q Consensus 433 ~~~G~~-~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A 476 (796)
|+.|+. ++|.++|++|.+.|+.||.++|+++|.++.+.+-++.+
T Consensus 211 cK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 211 GRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH
Confidence 999984 78999999999999999999999999887776544433
No 8
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=2.8e-20 Score=220.87 Aligned_cols=150 Identities=9% Similarity=-0.093 Sum_probs=130.6
Q ss_pred cchhhhcccCccccccccccCChHHHHHHHHHHHH---cCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccc
Q 003768 278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN---LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDA 354 (796)
Q Consensus 278 ~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~---~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~ 354 (796)
.+|||+||+| ||+.|++++|.++|++|.+ +|+.||++||
T Consensus 127 ~~TynaLIdg------lcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTY-------------------------------- 168 (1134)
T 3spa_A 127 QQRLLAFFKC------CLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMY-------------------------------- 168 (1134)
T ss_dssp HHHHHHHHHH------HHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHH--------------------------------
T ss_pred HHHHHHHHHH------HHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHH--------------------------------
Confidence 4689999999 9999999999999998864 5899999999
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 003768 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG-DMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (796)
Q Consensus 355 ~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~-~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~ 433 (796)
|+||+|||+.|++++|.++|++|.+.|+.||++|||+||+++|+.|+. ++|.++|++|.+.|+.||.+||+++|.++.
T Consensus 169 -NtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 169 -NAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp -HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred -HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 999999999999999999999999999999999999999999999985 789999999999999999999999998877
Q ss_pred HcCChHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcC
Q 003768 434 NNGDVDKACSVEEHMLEHGVYPE------EPELEALLRVSVEAG 471 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~gv~pd------~~ty~~LI~~~~~~G 471 (796)
+.+-++.. +.+ ..++.|+ ..+...|.+.|.+.+
T Consensus 248 R~~vL~~V----rkv-~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 248 RATVLKAV----HKV-KPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHH----GGG-CCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHHHH----HHh-CcccCCCCCCcccccchHHHHHHHccCC
Confidence 76544333 333 3455555 556667778887665
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.54 E-value=1.2e-12 Score=143.75 Aligned_cols=279 Identities=11% Similarity=-0.035 Sum_probs=212.4
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCS 237 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~-tyn~LL~a~~ 237 (796)
...+.++.++|...|+.+.... | .+...|..+..++.+.|++++|++.|+++.+.. |+.. .+..+-..+.
T Consensus 76 ~~~~~g~~~~A~~~~~~al~~~--p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 76 VYKERGQLQEAIEHYRHALRLK--P-----DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcC--c-----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 4556778888888888875431 1 133578888888888888888888888888653 4443 4444445555
Q ss_pred ccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCC
Q 003768 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (796)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~P 317 (796)
..|++++|...|. ++... .-.+..+|+.+... +.+.|++++|...|+++.... |
T Consensus 147 ----------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~--p 200 (388)
T 1w3b_A 147 ----------ALGRLEEAKACYL-------KAIET-QPNFAVAWSNLGCV------FNAQGEIWLAIHHFEKAVTLD--P 200 (388)
T ss_dssp ----------TTSCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHC--T
T ss_pred ----------HccCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcC--C
Confidence 6789999999884 44432 22256678888888 899999999999999988753 4
Q ss_pred Ccc-eec--------cchhhhHHhhhhcC---CC-CcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCC
Q 003768 318 NGH-MKL--------NSQLLDGRSNLERG---PD-DQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP 384 (796)
Q Consensus 318 d~~-ty~--------~g~~~~A~~l~~~m---~p-d~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~ 384 (796)
+.. .|. .++.++|...+.+. .| +..+| ..+...|.+.|++++|.+.|+++.... +
T Consensus 201 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~al~~~-p 268 (388)
T 1w3b_A 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH-----------GNLACVYYEQGLIDLAIDTYRRAIELQ-P 268 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHTC-S
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHhhC-C
Confidence 432 222 67777887777765 44 34556 778888999999999999999988764 3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003768 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (796)
Q Consensus 385 pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI 464 (796)
.+..+|..+..++.+.|++++|..+|+++.+. ...+..+|+.+...+.+.|+.++|.+.++++.+.. ..+...|..|.
T Consensus 269 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 346 (388)
T 1w3b_A 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLA 346 (388)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 35678899999999999999999999998876 34567888889999999999999999999987743 23577888999
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 003768 465 RVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 465 ~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..|.+.|++++|...|+++.+.
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999998865
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.53 E-value=4.9e-12 Score=138.81 Aligned_cols=298 Identities=10% Similarity=-0.050 Sum_probs=236.1
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~ 239 (796)
.-+.++.++|.+.++.+.... | .+...+..+-..+.+.|++++|..+++...+.. +.+..+|..+-.++.
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~--p-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~-- 78 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE--P-----DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK-- 78 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH--
T ss_pred HHHCCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH--
Confidence 346788999999999885532 1 233566666778889999999999999888653 567889999999999
Q ss_pred ccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCc
Q 003768 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (796)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~ 319 (796)
+.|++++|...|. ++... .-.+...|..+..+ +.+.|++++|...|+++.+. .|+.
T Consensus 79 --------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~--~p~~ 134 (388)
T 1w3b_A 79 --------ERGQLQEAIEHYR-------HALRL-KPDFIDGYINLAAA------LVAAGDMEGAVQAYVSALQY--NPDL 134 (388)
T ss_dssp --------HHTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHHSCSSHHHHHHHHHHHH--CTTC
T ss_pred --------HCCCHHHHHHHHH-------HHHHc-CcchHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHh--CCCc
Confidence 8899999999994 44432 11145568999999 99999999999999999876 4665
Q ss_pred ceec---------cchhhhHHhhhhcC---CCC-cccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCC
Q 003768 320 HMKL---------NSQLLDGRSNLERG---PDD-QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN 386 (796)
Q Consensus 320 ~ty~---------~g~~~~A~~l~~~m---~pd-~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd 386 (796)
.... .|+.++|...|.++ .|+ ..+| +.+...|.+.|++++|.+.|+++.... +-+
T Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 202 (388)
T 1w3b_A 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW-----------SNLGCVFNAQGEIWLAIHHFEKAVTLD-PNF 202 (388)
T ss_dssp THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHH-----------HHHHHHHHTTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCc
Confidence 5433 68999999999887 443 4566 888899999999999999999998754 345
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALL 464 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI 464 (796)
...|..+...+...|++++|...+++.... .| +..+|..+...|.+.|+.++|.+.|+.+.+.. | +...|..+.
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 278 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLA 278 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHH
Confidence 778999999999999999999999988765 34 46788889999999999999999999998864 4 467899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCC-ChhHHHH-HHHHHhchHHHH
Q 003768 465 RVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTADV-IAKWFNSKEAAR 509 (796)
Q Consensus 465 ~~~~~~G~~~~A~~ll~~M~~~~~~~-~p~t~~~-I~~~~~~~~~~~ 509 (796)
..+.+.|++++|..+|+++.+. .+ .+.++.. ...+++.+...+
T Consensus 279 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 323 (388)
T 1w3b_A 279 NALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999876 33 2334444 444444444433
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.48 E-value=8.8e-12 Score=139.04 Aligned_cols=285 Identities=9% Similarity=-0.051 Sum_probs=224.3
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
...+.++.++|..+|+.+.... ..+...|..+...|.+.|++++|+..|+++.+.+ +.+...|..+..+|.
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~- 105 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL- 105 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH-
Confidence 5567899999999999986542 2346899999999999999999999999999765 345788999999999
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCc---chhhhcccC------ccccccccccCChHHHHHHHHH
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN---GQLDYGSSP------MIDKLESNSSYRFDDLDSTFNE 309 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~---~tyn~LI~~------~~~~~~~~~~g~~~~A~~lf~e 309 (796)
+.|++++|...|. ++... .-.+. ..|..++.. ......+.+.|++++|..+|++
T Consensus 106 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 106 ---------KQGKLDEAEDDFK-------KVLKS-NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------HcCCHHHHHHHHH-------HHHhc-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8899999999994 44432 22233 445544221 0001227889999999999999
Q ss_pred HHHcCCCCC-cceec--------cchhhhHHhhhhcC----CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHH
Q 003768 310 KENLGQFSN-GHMKL--------NSQLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYE 376 (796)
Q Consensus 310 M~~~Gi~Pd-~~ty~--------~g~~~~A~~l~~~m----~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~ 376 (796)
+.+.. |+ ...+. .|+..+|...|.++ ..+..+| ..+...|.+.|++++|.+.|+
T Consensus 169 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 169 ILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF-----------YKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHH-----------HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-----------HHHHHHHHHcCCHHHHHHHHH
Confidence 98753 33 22332 88899999999887 4556677 889999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCC-----cccHHHHHHHHHHcCChH
Q 003768 377 KMCLDEVPMNEASLTAV------------GRMAMSMGDGDMAFDMVKRMKSLGINPR-----LRSYGPALSVFCNNGDVD 439 (796)
Q Consensus 377 ~M~~~gi~pd~~ty~~L------------I~~~~~~g~~~~A~~l~~~M~~~gi~Pd-----~~ty~~LI~~~~~~G~~~ 439 (796)
++.... +.+...+..+ ...|.+.|++++|..+|+++.+. .|+ ...|..+...+.+.|+.+
T Consensus 236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 998643 2344555555 78899999999999999999874 455 447888889999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+|.+.++.+.+.. ..+...|..+..+|...|++++|...|++..+.
T Consensus 313 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 313 EAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999988753 236789999999999999999999999999875
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.45 E-value=5.6e-12 Score=140.59 Aligned_cols=277 Identities=10% Similarity=0.037 Sum_probs=220.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhh
Q 003768 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (796)
Q Consensus 190 d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em 269 (796)
+...|..+...+.+.|++++|+.+|+++.+.. +.+...|..+..++. ..|+.++|...|. ++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~----------~~g~~~~A~~~~~-------~a 86 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFL----------AMGKSKAALPDLT-------KV 86 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HH
Confidence 45789999999999999999999999999753 457889999999998 8899999999994 44
Q ss_pred hccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcc------------------------eeccc
Q 003768 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH------------------------MKLNS 325 (796)
Q Consensus 270 ~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~------------------------ty~~g 325 (796)
... +-.+...|..+... |.+.|++++|...|+++.+.. |+.. .+..|
T Consensus 87 l~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 87 IQL-KMDFTAARLQRGHL------LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157 (450)
T ss_dssp HHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred Hhc-CCCcHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 443 22256678889889 999999999999999998754 5432 11178
Q ss_pred hhhhHHhhhhcC----CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003768 326 QLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401 (796)
Q Consensus 326 ~~~~A~~l~~~m----~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g 401 (796)
+..+|...|+++ ..+...+ ..+...|.+.|++++|.++|+++.... +.+..+|..+..+|...|
T Consensus 158 ~~~~A~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVCVWDAELR-----------ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHH-----------HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCCChHHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 889999999887 3455556 889999999999999999999998753 457899999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCccc-HHHH------------HHHHHHcCChHHHHHHHHHHHhCCCCCC-----HHHHHHH
Q 003768 402 DGDMAFDMVKRMKSLGINPRLRS-YGPA------------LSVFCNNGDVDKACSVEEHMLEHGVYPE-----EPELEAL 463 (796)
Q Consensus 402 ~~~~A~~l~~~M~~~gi~Pd~~t-y~~L------------I~~~~~~G~~~~A~~l~~~M~~~gv~pd-----~~ty~~L 463 (796)
++++|...|+++.+. .|+... +..+ ...|.+.|+.++|.++|+.+.+.. |+ ...|..+
T Consensus 226 ~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l 301 (450)
T 2y4t_A 226 DHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERI 301 (450)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHH
Confidence 999999999999865 455443 3333 688999999999999999998843 65 4578889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCC-ChhHHHH-HHHHHhchHHHHhc
Q 003768 464 LRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTADV-IAKWFNSKEAARLG 511 (796)
Q Consensus 464 I~~~~~~G~~~~A~~ll~~M~~~~~~~-~p~t~~~-I~~~~~~~~~~~a~ 511 (796)
...+.+.|++++|..+++++... .+ .+..+.. ...+...+...+|.
T Consensus 302 ~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~ 349 (450)
T 2y4t_A 302 CHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAI 349 (450)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999998875 33 3344444 44455555544443
No 13
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.24 E-value=6.8e-12 Score=139.46 Aligned_cols=225 Identities=13% Similarity=0.096 Sum_probs=91.2
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.+.+.++.++|.+.++.+ ..| .+|..|..++.+.|++++|++.|.+. +|..+|..++.+|.
T Consensus 12 ll~~~~~ld~A~~fae~~----------~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae- 72 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC----------NEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAAN- 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC----------CCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHH-
Confidence 344677789999999999 122 59999999999999999999999763 58889999999998
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd 318 (796)
..|++++|...+. |..+ ..++..+.+.|+.+ |.+.|+++++.++++ .|+
T Consensus 73 ---------~~g~~EeAi~yl~--------~ark-~~~~~~i~~~Li~~------Y~Klg~l~e~e~f~~-------~pn 121 (449)
T 1b89_A 73 ---------TSGNWEELVKYLQ--------MARK-KARESYVETELIFA------LAKTNRLAELEEFIN-------GPN 121 (449)
T ss_dssp ------------------------------------------------------------CHHHHTTTTT-------CC-
T ss_pred ---------hCCCHHHHHHHHH--------HHHH-hCccchhHHHHHHH------HHHhCCHHHHHHHHc-------CCc
Confidence 7899999999773 5444 34467789999999 999999999988875 266
Q ss_pred cceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003768 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (796)
Q Consensus 319 ~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~ 398 (796)
..+| +.+-+.|...|.+++|..+|..+ ..|..|+.+++
T Consensus 122 ~~a~---------------------------------~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~ 159 (449)
T 1b89_A 122 NAHI---------------------------------QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLV 159 (449)
T ss_dssp ------------------------------------------------CTTTHHHHHHHT---------TCHHHHHHHHH
T ss_pred HHHH---------------------------------HHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHH
Confidence 6566 88888999999999999999977 37899999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 003768 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478 (796)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ 478 (796)
+.|++++|.+.+.++ -+..+|..++.+|+..|+++.|...... +..+......|+..|.+.|++++|..
T Consensus 160 ~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~ 228 (449)
T 1b89_A 160 HLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELIT 228 (449)
T ss_dssp TTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHH
Confidence 999999999999887 2778999999999999999999655443 33344446678899999999999999
Q ss_pred HHHHHHhC
Q 003768 479 LLHKLRTS 486 (796)
Q Consensus 479 ll~~M~~~ 486 (796)
+|+.-...
T Consensus 229 lLe~aL~l 236 (449)
T 1b89_A 229 MLEAALGL 236 (449)
T ss_dssp HHHHHTTS
T ss_pred HHHHHhCC
Confidence 88877644
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.22 E-value=1.2e-09 Score=123.26 Aligned_cols=286 Identities=10% Similarity=0.006 Sum_probs=215.8
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
...+.++..+|...|+++.... |+...|..+..+|.+.|++++|+..|+++.+.+ +-+...|..+..++.
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~- 84 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE- 84 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH-
T ss_pred HHHHhccHHHHHHHHHHHHhcC--------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH-
Confidence 3456789999999999997643 567999999999999999999999999999765 445778888999998
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhh-----------------------------------
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDY----------------------------------- 283 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~----------------------------------- 283 (796)
+.|++++|...|. .+..... .+......
T Consensus 85 ---------~~g~~~~A~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 147 (514)
T 2gw1_A 85 ---------GLGKFADAMFDLS-------VLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQP 147 (514)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC------------------
T ss_pred ---------HHhhHHHHHHHHH-------HHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCh
Confidence 8899999999984 3322211 00000000
Q ss_pred ------------------------------------------cccCccccccccccCChHHHHHHHHHHHH-----cCCC
Q 003768 284 ------------------------------------------GSSPMIDKLESNSSYRFDDLDSTFNEKEN-----LGQF 316 (796)
Q Consensus 284 ------------------------------------------LI~~~~~~~~~~~~g~~~~A~~lf~eM~~-----~Gi~ 316 (796)
+..+ .....+.+.|++++|..+|+++.. ..-.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 226 (514)
T 2gw1_A 148 AKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNG-LSNLYKRSPESYDKADESFTKAARLFEEQLDKN 226 (514)
T ss_dssp ---------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHH-HHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHH-HHHHHhhhhccHHHHHHHHHHHHHHhhhhhccC
Confidence 0000 000002248999999999999988 4323
Q ss_pred CCcc--------eec--------cchhhhHHhhhhcC---CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHH
Q 003768 317 SNGH--------MKL--------NSQLLDGRSNLERG---PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEK 377 (796)
Q Consensus 317 Pd~~--------ty~--------~g~~~~A~~l~~~m---~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~ 377 (796)
|+.. .+. .|+..+|...+.+. .|+...| ..+...|...|++++|.+.|++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-----------~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSY-----------IYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHH-----------HHHHHHHHTSSCCTTGGGHHHH
T ss_pred ccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHH-----------HHHHHHHHHCCCHHHHHHHHHH
Confidence 4332 111 78888998888886 5554455 7788889999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH
Q 003768 378 MCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457 (796)
Q Consensus 378 M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~ 457 (796)
+.... +.+..+|..+...+...|++++|...+++..+.. ..+...|..+...|...|+.++|.++++.+.+.. ..+.
T Consensus 296 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 372 (514)
T 2gw1_A 296 ALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAP 372 (514)
T ss_dssp HHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCS
T ss_pred HhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCH
Confidence 88754 3466788999999999999999999999988763 2356778888888999999999999999988753 2256
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 458 PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 458 ~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..|..+...|.+.|++++|...++++...
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 78888889999999999999999988664
No 15
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.22 E-value=4.2e-09 Score=111.19 Aligned_cols=256 Identities=8% Similarity=-0.059 Sum_probs=195.8
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.....++.++|..+|+++..... .+...|..+...+.+.|++++|...|+++.+.. +.+..++..+-..+.
T Consensus 30 ~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~- 100 (327)
T 3cv0_A 30 SMLKLANLAEAALAFEAVCQAAP-------EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT- 100 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH-
Confidence 45577899999999999866431 245788899999999999999999999998763 346778888888888
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhc--------------cc-CccccccccccCChHHH
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYG--------------SS-PMIDKLESNSSYRFDDL 303 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~L--------------I~-~~~~~~~~~~~g~~~~A 303 (796)
..|+.++|...+. +.... .-.+...+..+ .. . +...|++++|
T Consensus 101 ---------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A 157 (327)
T 3cv0_A 101 ---------NEHNANAALASLR-------AWLLS-QPQYEQLGSVNLQADVDIDDLNVQSEDFF------FAAPNEYREC 157 (327)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHT-STTTTTC--------------------CC------TTSHHHHHHH
T ss_pred ---------HcCCHHHHHHHHH-------HHHHh-CCccHHHHHHHhHHHHHHHHHHHHHHhHH------HHHcccHHHH
Confidence 7899999999995 33332 11122223332 11 2 6677888999
Q ss_pred HHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCC
Q 003768 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (796)
Q Consensus 304 ~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (796)
...++++.+..- .+...+ ..+...|.+.|++++|.++|+++....
T Consensus 158 ~~~~~~~~~~~~-~~~~~~---------------------------------~~la~~~~~~~~~~~A~~~~~~~~~~~- 202 (327)
T 3cv0_A 158 RTLLHAALEMNP-NDAQLH---------------------------------ASLGVLYNLSNNYDSAAANLRRAVELR- 202 (327)
T ss_dssp HHHHHHHHHHST-TCHHHH---------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhCC-CCHHHH---------------------------------HHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 999888876531 122222 677888899999999999999988753
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC--------
Q 003768 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-------- 455 (796)
Q Consensus 384 ~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-------- 455 (796)
+.+..+|..+...+...|++++|...|+++.+.. ..+..+|..+...|.+.|+.++|.+.++...+..-..
T Consensus 203 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 281 (327)
T 3cv0_A 203 PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS 281 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----C
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccch
Confidence 3467889999999999999999999999987753 2356778888899999999999999999887653111
Q ss_pred ---CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003768 456 ---EEPELEALLRVSVEAGKGDRVYYLLHK 482 (796)
Q Consensus 456 ---d~~ty~~LI~~~~~~G~~~~A~~ll~~ 482 (796)
+...|..+..++.+.|+.++|..++++
T Consensus 282 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 282 REATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp CTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred hhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 367888999999999999999988764
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.19 E-value=6.8e-09 Score=109.70 Aligned_cols=259 Identities=9% Similarity=-0.071 Sum_probs=206.2
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.....++..+|.++|+.+...... +...+..++..+.+.|++++|+.+|+++.+.. +-+...|..+-..+.
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~~p~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~- 101 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEKDPF-------HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL- 101 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-------CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH-
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-------ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH-
Confidence 344568999999999998654321 22466677888899999999999999999753 235667777777777
Q ss_pred cccCCcccCCCC-ChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCC
Q 003768 239 AAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (796)
Q Consensus 239 ~~~~~~~~~k~G-~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~P 317 (796)
..| +.++|...|. +.... .-.+...|..+... +...|++++|...|++..... |
T Consensus 102 ---------~~~~~~~~A~~~~~-------~a~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~ 156 (330)
T 3hym_B 102 ---------MVGHKNEHARRYLS-------KATTL-EKTYGPAWIAYGHS------FAVESEHDQAMAAYFTAAQLM--K 156 (330)
T ss_dssp ---------HSCSCHHHHHHHHH-------HHHTT-CTTCTHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHT--T
T ss_pred ---------HhhhhHHHHHHHHH-------HHHHh-CCccHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhc--c
Confidence 678 8999999995 33332 21255668888888 999999999999999887763 2
Q ss_pred C-cceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003768 318 N-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM 396 (796)
Q Consensus 318 d-~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~ 396 (796)
+ ...+ ..+...|...|++++|.+.|++..... +.+..++..+...
T Consensus 157 ~~~~~~---------------------------------~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 202 (330)
T 3hym_B 157 GCHLPM---------------------------------LYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVV 202 (330)
T ss_dssp TCSHHH---------------------------------HHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred ccHHHH---------------------------------HHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 2 1222 557788899999999999999998764 4568899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCC--------CCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003768 397 AMSMGDGDMAFDMVKRMKSLG--------INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (796)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g--------i~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~ 468 (796)
+...|++++|...+++..+.. ...+..+|..+-..|.+.|+.++|.+.++...+.. ..+...|..+-..|.
T Consensus 203 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 281 (330)
T 3hym_B 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHS 281 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHH
Confidence 999999999999999987641 13346788899999999999999999999998764 235678899999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 003768 469 EAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 469 ~~G~~~~A~~ll~~M~~~ 486 (796)
+.|+.++|...|++..+.
T Consensus 282 ~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 282 LMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHTCHHHHHHHHHTTTTT
T ss_pred HhccHHHHHHHHHHHHcc
Confidence 999999999999998765
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.18 E-value=1.4e-09 Score=117.49 Aligned_cols=248 Identities=11% Similarity=-0.009 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhh
Q 003768 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (796)
Q Consensus 191 ~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~ 270 (796)
...|..+-..+.+.|++++|+.+|+++.+.. +.+...|..+-.++. +.|++++|...|. +..
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~----------~~g~~~~A~~~~~-------~al 125 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQA----------ENEQELLAISALR-------RCL 125 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HCcCHHHHHHHHH-------HHH
Confidence 3567788889999999999999999999764 446778888888888 8899999999995 443
Q ss_pred ccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceec--cchhhhHHhhhhcCCCCcccccccc
Q 003768 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL--NSQLLDGRSNLERGPDDQSRKKDWS 348 (796)
Q Consensus 271 ~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~--~g~~~~A~~l~~~m~pd~~ty~~~~ 348 (796)
.. .-.+...|..+... +...|++++|...|+++.... |+..... .+..... ..+.. .+
T Consensus 126 ~~-~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~-~~---- 185 (368)
T 1fch_A 126 EL-KPDNQTALMALAVS------FTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGG------AGLGP-SK---- 185 (368)
T ss_dssp HH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHTS--TTTGGGCC--------------------------
T ss_pred hc-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhh------hcccH-HH----
Confidence 32 22256678888888 999999999999999998864 3322110 0000000 00000 00
Q ss_pred cccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHH
Q 003768 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427 (796)
Q Consensus 349 ~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~-pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~ 427 (796)
. .+..+...|++++|.++|+++....-. ++..++..+...|...|++++|...|+++.+.. ..+..+|..
T Consensus 186 -------~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~ 256 (368)
T 1fch_A 186 -------R-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNK 256 (368)
T ss_dssp -------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred -------H-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 1 233344888899999999988875321 157888889999999999999999998887652 234677888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 428 LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+...+.+.|+.++|.+.|+.+.+.. ..+...|..+...|.+.|++++|...|++....
T Consensus 257 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 257 LGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8888899999999999998887753 235678888888999999999999999887654
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.18 E-value=1.2e-09 Score=118.52 Aligned_cols=255 Identities=9% Similarity=-0.066 Sum_probs=188.9
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
...+.++.++|..+|+.+.... ..+...|..+...|.+.|++++|+..|+++.+.. +.+..+|..+-.+|.
T Consensus 74 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~- 144 (365)
T 4eqf_A 74 KRLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT- 144 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH-
Confidence 4567789999999999986643 1245899999999999999999999999999764 345888999999998
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCc----------chhhhcccCccccccccccCChHHHHHHHH
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN----------GQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~----------~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~ 308 (796)
..|++++|...|. ++... .-.+. ..++.+... +...|++++|..+|+
T Consensus 145 ---------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~ 201 (365)
T 4eqf_A 145 ---------NTSHQQDACEALK-------NWIKQ-NPKYKYLVKNKKGSPGLTRRMSKS------PVDSSVLEGVKELYL 201 (365)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHH-CHHHHCC-------------------------CCHHHHHHHHHHH
T ss_pred ---------ccccHHHHHHHHH-------HHHHh-CccchHHHhhhccchHHHHHHHHH------HhhhhhHHHHHHHHH
Confidence 8899999999995 33221 00011 112334555 888889999999998
Q ss_pred HHHHcCCCCC---cceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCC
Q 003768 309 EKENLGQFSN---GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM 385 (796)
Q Consensus 309 eM~~~Gi~Pd---~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~p 385 (796)
++.... |+ ...+ ..+...|.+.|++++|.+.|++..+.. +.
T Consensus 202 ~al~~~--p~~~~~~~~---------------------------------~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 245 (365)
T 4eqf_A 202 EAAHQN--GDMIDPDLQ---------------------------------TGLGVLFHLSGEFNRAIDAFNAALTVR-PE 245 (365)
T ss_dssp HHHHHS--CSSCCHHHH---------------------------------HHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHhC--cCccCHHHH---------------------------------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 887763 32 2223 677788888999999999999888753 44
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCC---C--------C
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG---V--------Y 454 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g---v--------~ 454 (796)
+..+|+.+..+|...|++++|...|++..+.. ..+..+|..+-..|.+.|+.++|.+.|+...+.. . .
T Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 324 (365)
T 4eqf_A 246 DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPA 324 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC----------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhh
Confidence 67889999999999999999999999887652 2236778888888999999999999998887632 0 0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003768 455 PEEPELEALLRVSVEAGKGDRVYYLLHK 482 (796)
Q Consensus 455 pd~~ty~~LI~~~~~~G~~~~A~~ll~~ 482 (796)
.+...|..|-.++...|+.+.+..+..+
T Consensus 325 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 325 ISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp --CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 1357788888888888988877766543
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.14 E-value=1.5e-09 Score=117.68 Aligned_cols=246 Identities=9% Similarity=-0.030 Sum_probs=189.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhh
Q 003768 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (796)
Q Consensus 190 d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em 269 (796)
+...|..+-..+.+.|++++|+.+|+++.+.. +.+..+|..+-.++. +.|++++|...|. +.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~----------~~g~~~~A~~~~~-------~a 125 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQA----------ENENEQAAIVALQ-------RC 125 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HH
Confidence 34568888899999999999999999999764 346888999999998 8899999999995 44
Q ss_pred hccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCccccccccc
Q 003768 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (796)
Q Consensus 270 ~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~ 349 (796)
... .-.+...|..+... |...|++++|...|+++.... |+........ ......+
T Consensus 126 l~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----------~~~~~~~----- 180 (365)
T 4eqf_A 126 LEL-QPNNLKALMALAVS------YTNTSHQQDACEALKNWIKQN--PKYKYLVKNK-----------KGSPGLT----- 180 (365)
T ss_dssp HHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--HHHHCC---------------------------
T ss_pred Hhc-CCCCHHHHHHHHHH------HHccccHHHHHHHHHHHHHhC--ccchHHHhhh-----------ccchHHH-----
Confidence 332 22256678889888 999999999999999998753 3321110000 0000111
Q ss_pred ccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHH
Q 003768 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (796)
Q Consensus 350 ~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~-pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~L 428 (796)
..+...|.+.|++++|.++|+++....-. ++..+|..+...|...|++++|...|++..+.. ..+..+|..+
T Consensus 181 ------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 253 (365)
T 4eqf_A 181 ------RRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRL 253 (365)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ------HHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 44577888999999999999999886422 268899999999999999999999999988762 3457789999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 429 I~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
...|.+.|+.++|.+.|+...+.. ..+...|..|-..|.+.|++++|...|++....
T Consensus 254 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 254 GATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999998754 224788999999999999999999999998764
No 20
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.12 E-value=2.8e-08 Score=105.97 Aligned_cols=279 Identities=8% Similarity=-0.066 Sum_probs=203.9
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.....++.++|...|+...... ..+...|..+-..+.+.|++++|+..|+++.+.. +-+...|..+-..+.
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~- 82 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL- 82 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH-
Confidence 3456789999999999986642 1235788999999999999999999999999763 235678888888888
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCC---CCcchhhhc------------ccCccccccccccCChHHH
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM---DNNGQLDYG------------SSPMIDKLESNSSYRFDDL 303 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv---~d~~tyn~L------------I~~~~~~~~~~~~g~~~~A 303 (796)
..|+.++|...|. +.... .- .+...+..+ ... +...|++++|
T Consensus 83 ---------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~------~~~~~~~~~A 139 (359)
T 3ieg_A 83 ---------KQGKLDEAEDDFK-------KVLKS-NPSEQEEKEAESQLVKADEMQRLRSQALD------AFDGADYTAA 139 (359)
T ss_dssp ---------HHTCHHHHHHHHH-------HHHTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHTTCHHHH
T ss_pred ---------HcCChHHHHHHHH-------HHHhc-CCcccChHHHHHHHHHHHHHHHHHHHHHH------HHHccCHHHH
Confidence 7899999999995 33332 11 122223333 344 8889999999
Q ss_pred HHHHHHHHHcCCCCCc-ceec--------cchhhhHHhhhhcC----CCCcccccccccccccchhhHHHHHHhccCHHH
Q 003768 304 DSTFNEKENLGQFSNG-HMKL--------NSQLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370 (796)
Q Consensus 304 ~~lf~eM~~~Gi~Pd~-~ty~--------~g~~~~A~~l~~~m----~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~ 370 (796)
..+|+++.+.. |+. ..+. .|+..+|...+.+. ..+...| ..+...|...|++++
T Consensus 140 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 140 ITFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF-----------YKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHH-----------HHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-----------HHHHHHHHHcCCHHH
Confidence 99999998763 332 2222 77888888888776 3344445 777788888889999
Q ss_pred HHHHHHHHHhCCCCCCHHHHH------------HHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc-----cHHHHHHHHH
Q 003768 371 GFEIYEKMCLDEVPMNEASLT------------AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-----SYGPALSVFC 433 (796)
Q Consensus 371 A~~lf~~M~~~gi~pd~~ty~------------~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~-----ty~~LI~~~~ 433 (796)
|.+.|++..+.. +.+..++. .+...+.+.|++++|...+++..+.. |+.. .|..+-..+.
T Consensus 207 A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 207 SLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHH
Confidence 999988887643 22333333 23566888899999999998887653 4432 2444567788
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+.|+.++|.+.++...+.. ..+...|..+-..|.+.|++++|...|++..+.
T Consensus 284 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 8899999999998887753 236778888888888999999999999888876
No 21
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.09 E-value=3.1e-09 Score=112.95 Aligned_cols=242 Identities=13% Similarity=0.022 Sum_probs=146.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCC
Q 003768 200 MCSKRGDVMGAIRLYDKAQREGIKLGQ--YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN 277 (796)
Q Consensus 200 a~~k~G~~~~A~~lf~~M~~~Gi~pd~--~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d 277 (796)
..-..|++..|+..++.... ..|+. ...-.+..+|. ..|+++.|...+. .. .-++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi----------~~g~~~~al~~~~-------~~----~~~~ 64 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYL----------AQRKYGVVLDEIK-------PS----SAPE 64 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHH----------HTTCHHHHHHHSC-------TT----SCHH
T ss_pred HHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHH----------HCCCHHHHHHHhc-------cc----CChh
Confidence 33445666666665554321 22322 23333445555 4566666665552 10 1113
Q ss_pred cchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceec---------cchhhhHHhhhhcCCCCcccccccc
Q 003768 278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL---------NSQLLDGRSNLERGPDDQSRKKDWS 348 (796)
Q Consensus 278 ~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~---------~g~~~~A~~l~~~m~pd~~ty~~~~ 348 (796)
..++..+... ++..++.++|.+.+++|...++.|+...+. .|+.++|...+++ ..+...+
T Consensus 65 ~~a~~~la~~------~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~~~~~~~---- 133 (291)
T 3mkr_A 65 LQAVRMFAEY------LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-GDSLECM---- 133 (291)
T ss_dssp HHHHHHHHHH------HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-CCSHHHH----
T ss_pred HHHHHHHHHH------HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-CCCHHHH----
Confidence 3445555555 666666666666666666655555543332 4555555555554 2233333
Q ss_pred cccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccH
Q 003768 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL---TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (796)
Q Consensus 349 ~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty---~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty 425 (796)
..+...|.+.|++++|.+.|+++.... |+...+ .+++..+...|++++|..+|+++.+. ...+...|
T Consensus 134 -------~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~ 203 (291)
T 3mkr_A 134 -------AMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLL 203 (291)
T ss_dssp -------HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHH
T ss_pred -------HHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHH
Confidence 667778888888888888888887763 443211 22334444557888888888888776 44566777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHhC
Q 003768 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR-VYYLLHKLRTS 486 (796)
Q Consensus 426 ~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~-A~~ll~~M~~~ 486 (796)
+.+-.++.+.|++++|.+.|++..+.. .-+..++..++..+...|+.++ +.++++++.+.
T Consensus 204 ~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 204 NGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 778888888888888888888877653 1256677888888888888765 56788777765
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.06 E-value=2.4e-08 Score=105.26 Aligned_cols=246 Identities=8% Similarity=-0.076 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhc
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~ 271 (796)
..|-.+-..+.+.|++++|+.+|+++.+.. +-+...+..+-.++. ..|+.++|...|. +...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~a~~ 83 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQA----------ENEKDGLAIIALN-------HARM 83 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHh
Confidence 345566778899999999999999998764 336778888888888 7899999999995 3333
Q ss_pred cCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCccccccccccc
Q 003768 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (796)
Q Consensus 272 ~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~ 351 (796)
. .-.+...|..+... +...|++++|...|++..... |+.... ...+....++....
T Consensus 84 ~-~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~~~~------- 139 (327)
T 3cv0_A 84 L-DPKDIAVHAALAVS------HTNEHNANAALASLRAWLLSQ--PQYEQL--------GSVNLQADVDIDDL------- 139 (327)
T ss_dssp H-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHTS--TTTTTC-----------------------------
T ss_pred c-CcCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhC--CccHHH--------HHHHhHHHHHHHHH-------
Confidence 2 22255667788888 999999999999999998763 332211 00000000000000
Q ss_pred ccchhhHHHH--HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH
Q 003768 352 QDADEIRLSE--DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (796)
Q Consensus 352 ~~~~n~lI~~--~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI 429 (796)
..+-.. +...|++++|.++|+++.... +.+..++..+...+...|++++|...++++.+.. ..+..+|..+.
T Consensus 140 ----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 213 (327)
T 3cv0_A 140 ----NVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLG 213 (327)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ----HHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 101022 677889999999999998764 3478899999999999999999999999988763 23567888899
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 430 ~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..+...|+.++|.+.++++.+.. ..+...|..+...|.+.|++++|...|++....
T Consensus 214 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 214 ATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999988754 235788999999999999999999999998776
No 23
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.06 E-value=1.1e-08 Score=115.41 Aligned_cols=267 Identities=9% Similarity=-0.005 Sum_probs=209.8
Q ss_pred hcCCcchHHHHHHHHHh-----cCCCCCCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003768 162 QRTNDSGQYKVRGITDE-----KGSKKSKK--DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234 (796)
Q Consensus 162 k~~~~~~A~~vf~~M~~-----~g~~~~~g--~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~ 234 (796)
+.++.++|..+|+++.. ....++.. ...+...|..+...+.+.|++++|+.+|+++.+.. |+...|..+..
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~ 278 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMAL 278 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHH
Confidence 36788999999999866 22122210 02234688888899999999999999999999765 44788888888
Q ss_pred HHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcC
Q 003768 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (796)
Q Consensus 235 a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~G 314 (796)
++. ..|++++|...+. +.... .-.+...|..+... +...|++++|...|++.....
T Consensus 279 ~~~----------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~ 334 (514)
T 2gw1_A 279 IMA----------DRNDSTEYYNYFD-------KALKL-DSNNSSVYYHRGQM------NFILQNYDQAGKDFDKAKELD 334 (514)
T ss_dssp HHH----------TSSCCTTGGGHHH-------HHHTT-CTTCTHHHHHHHHH------HHHTTCTTHHHHHHHHHHHTC
T ss_pred HHH----------HCCCHHHHHHHHH-------HHhhc-CcCCHHHHHHHHHH------HHHhCCHHHHHHHHHHHHHhC
Confidence 888 8899999999994 43332 22255668888888 999999999999999988753
Q ss_pred CCCC-cceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003768 315 QFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAV 393 (796)
Q Consensus 315 i~Pd-~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~L 393 (796)
|+ ...+ ..+...|.+.|++++|.++|+++.... +.+..+|..+
T Consensus 335 --~~~~~~~---------------------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 378 (514)
T 2gw1_A 335 --PENIFPY---------------------------------IQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFF 378 (514)
T ss_dssp --SSCSHHH---------------------------------HHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHH
T ss_pred --hhhHHHH---------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHH
Confidence 22 2222 667788899999999999999988753 3356789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCC-CCCC----cccHHHHHHHHHH---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003768 394 GRMAMSMGDGDMAFDMVKRMKSLG-INPR----LRSYGPALSVFCN---NGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (796)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g-i~Pd----~~ty~~LI~~~~~---~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~ 465 (796)
...+...|++++|...++++.+.. -.|+ ...|..+...+.. .|+.++|.+.++.+.+.. ..+...+..+..
T Consensus 379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 457 (514)
T 2gw1_A 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQ 457 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 999999999999999999987642 1122 3388889999999 999999999999998754 235778899999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChh
Q 003768 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (796)
Q Consensus 466 ~~~~~G~~~~A~~ll~~M~~~~~~~~p~ 493 (796)
.|.+.|+.++|...|++..+. .+...
T Consensus 458 ~~~~~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 458 MKLQQEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh--ccccH
Confidence 999999999999999999887 54443
No 24
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.05 E-value=1.6e-08 Score=106.89 Aligned_cols=233 Identities=11% Similarity=-0.095 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhc
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~ 271 (796)
..+..+...+...|++++|+++|+++.+.. +.+...+..+..++. ..|+.++|...+. ++..
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~----------~~~~~~~A~~~~~-------~~~~ 84 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLV----------ELNKANELFYLSH-------KLVD 84 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHH----------HHTCHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHH----------HhhhHHHHHHHHH-------HHHH
Confidence 567778888899999999999999998654 233445555666666 6789999999994 4443
Q ss_pred cCCCCCcchhhhcccCccccccccccC-ChHHHHHHHHHHHHcCCCCC-cceeccchhhhHHhhhhcCCCCccccccccc
Q 003768 272 SRDMDNNGQLDYGSSPMIDKLESNSSY-RFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (796)
Q Consensus 272 ~~gv~d~~tyn~LI~~~~~~~~~~~~g-~~~~A~~lf~eM~~~Gi~Pd-~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~ 349 (796)
. .-.+...|..+-.. +...| ++++|...|++..... |+ ...|
T Consensus 85 ~-~~~~~~~~~~l~~~------~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~--------------------------- 128 (330)
T 3hym_B 85 L-YPSNPVSWFAVGCY------YLMVGHKNEHARRYLSKATTLE--KTYGPAW--------------------------- 128 (330)
T ss_dssp H-CTTSTHHHHHHHHH------HHHSCSCHHHHHHHHHHHHTTC--TTCTHHH---------------------------
T ss_pred h-CcCCHHHHHHHHHH------HHHhhhhHHHHHHHHHHHHHhC--CccHHHH---------------------------
Confidence 2 22255667777777 88899 9999999999887653 32 2222
Q ss_pred ccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH
Q 003768 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (796)
Q Consensus 350 ~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI 429 (796)
..+...|...|++++|.+.|++..... +.+..++..+...|...|++++|...+++..+.. ..+...+..+.
T Consensus 129 ------~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~ 200 (330)
T 3hym_B 129 ------IAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVG 200 (330)
T ss_dssp ------HHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred ------HHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 778888999999999999999998764 2345677779999999999999999999988663 34567888899
Q ss_pred HHHHHcCChHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 430 SVFCNNGDVDKACSVEEHMLEHG--------VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 430 ~~~~~~G~~~~A~~l~~~M~~~g--------v~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..+...|+.++|...++...+.. ...+...|..+-..|.+.|++++|...|++....
T Consensus 201 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 99999999999999999887641 1344678999999999999999999999999876
No 25
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.03 E-value=3.3e-08 Score=105.42 Aligned_cols=276 Identities=10% Similarity=0.039 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhh
Q 003768 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (796)
Q Consensus 191 ~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~ 270 (796)
+..|..+-..+.+.|++++|+.+|+++.+.. +.+...|..+-..+. ..|+.++|...|. +..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~----------~~~~~~~A~~~~~-------~~~ 64 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFL----------AMGKSKAALPDLT-------KVI 64 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HHTCHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH----------HccCHHHHHHHHH-------HHH
Confidence 4567788889999999999999999998753 335778888888887 7799999999995 443
Q ss_pred ccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCC---Cc-c-------------------e-eccch
Q 003768 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS---NG-H-------------------M-KLNSQ 326 (796)
Q Consensus 271 ~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~P---d~-~-------------------t-y~~g~ 326 (796)
.. .-.+...|..+-.. +...|++++|...|++..... | +. . . +..|+
T Consensus 65 ~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 65 AL-KMDFTAARLQRGHL------LLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD 135 (359)
T ss_dssp HH-CTTCHHHHHHHHHH------HHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred Hh-CCCcchHHHHHHHH------HHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 32 11255668888888 999999999999999998763 4 21 1 1 11788
Q ss_pred hhhHHhhhhcC----CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003768 327 LLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD 402 (796)
Q Consensus 327 ~~~A~~l~~~m----~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~ 402 (796)
..+|...+++. ..+...+ ..+...+.+.|++++|.+.|++..... +.+..++..+...+...|+
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELR-----------ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCchHHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 88898888886 3344445 778888999999999999999998764 5578899999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCccc-HH------------HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH-----HHHHHH
Q 003768 403 GDMAFDMVKRMKSLGINPRLRS-YG------------PALSVFCNNGDVDKACSVEEHMLEHGVYPEEP-----ELEALL 464 (796)
Q Consensus 403 ~~~A~~l~~~M~~~gi~Pd~~t-y~------------~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~-----ty~~LI 464 (796)
+++|...|++..+. .|+... +. .+...+.+.|+.++|.+.++...+.. |+.. .|..+-
T Consensus 204 ~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la 279 (359)
T 3ieg_A 204 HELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERIC 279 (359)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHH
Confidence 99999999998765 244322 22 22556889999999999999988754 4432 344567
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCC-ChhHHHH-HHHHHhchHHHHhc
Q 003768 465 RVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTADV-IAKWFNSKEAARLG 511 (796)
Q Consensus 465 ~~~~~~G~~~~A~~ll~~M~~~~~~~-~p~t~~~-I~~~~~~~~~~~a~ 511 (796)
..+...|++++|...+++.... .+ .+.++.. -..+...+...+|.
T Consensus 280 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~ 326 (359)
T 3ieg_A 280 HCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAI 326 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHH
Confidence 8889999999999999999876 33 3334333 44444455444433
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.02 E-value=5.9e-10 Score=123.93 Aligned_cols=216 Identities=12% Similarity=0.079 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhcc
Q 003768 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS 272 (796)
Q Consensus 193 tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~ 272 (796)
..+.||. +.|++++|.++++++. +..+|..|..++. +.|++++|.+.|.
T Consensus 8 a~~~ll~---~~~~ld~A~~fae~~~------~~~vWs~La~A~l----------~~g~~~eAIdsfi------------ 56 (449)
T 1b89_A 8 AVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQL----------QKGMVKEAIDSYI------------ 56 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH---HccCHHHHHHHHHhCC------ChHHHHHHHHHHH----------HcCCHHHHHHHHH------------
Confidence 3444553 6678999999999993 3459999999999 8899999999994
Q ss_pred CCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccc
Q 003768 273 RDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQ 352 (796)
Q Consensus 273 ~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~ 352 (796)
..+|..+|..++.+ +...|++++|...++...+. .++..+.
T Consensus 57 -ka~D~~~y~~V~~~------ae~~g~~EeAi~yl~~ark~--~~~~~i~------------------------------ 97 (449)
T 1b89_A 57 -KADDPSSYMEVVQA------ANTSGNWEELVKYLQMARKK--ARESYVE------------------------------ 97 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -cCCCHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHh--CccchhH------------------------------
Confidence 23466689999999 99999999999966655443 3444445
Q ss_pred cchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 003768 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (796)
Q Consensus 353 ~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~ 432 (796)
+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|.+++|..+|..+ ..|..|..++
T Consensus 98 ---~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L 158 (449)
T 1b89_A 98 ---TELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTL 158 (449)
T ss_dssp --------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHH
T ss_pred ---HHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHH
Confidence 889999999999999998885 378889999999999999999999999976 5899999999
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhH-HHHHHHHHhchHHH
Q 003768 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST-ADVIAKWFNSKEAA 508 (796)
Q Consensus 433 ~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t-~~~I~~~~~~~~~~ 508 (796)
.+.|++++|.+.+..+ .+..+|..++.+|+..|+++.|...... ....|+- ..++.-+-+.|...
T Consensus 159 ~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 159 VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHH
Confidence 9999999999999988 3889999999999999999999654443 2345553 33344444444433
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.02 E-value=9.3e-09 Score=109.26 Aligned_cols=242 Identities=10% Similarity=0.040 Sum_probs=179.2
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL-YLCS 237 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL-~a~~ 237 (796)
.....++.+.|...++. ...|+..++..+...+++.|+.++|++.++++...++.|+...+..++ .++.
T Consensus 43 ~yi~~g~~~~al~~~~~----------~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~ 112 (291)
T 3mkr_A 43 AYLAQRKYGVVLDEIKP----------SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYF 112 (291)
T ss_dssp HHHHTTCHHHHHHHSCT----------TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHhcc----------cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 34455666666653322 135677899999999999999999999999999888777655444444 5666
Q ss_pred ccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCC
Q 003768 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (796)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~P 317 (796)
..|+.++|...+. . -.+...+..+... +.+.|++++|...|+++.+.. |
T Consensus 113 ----------~~g~~~~Al~~l~-------~------~~~~~~~~~l~~~------~~~~g~~~~A~~~l~~~~~~~--p 161 (291)
T 3mkr_A 113 ----------YDQNPDAALRTLH-------Q------GDSLECMAMTVQI------LLKLDRLDLARKELKKMQDQD--E 161 (291)
T ss_dssp ----------HTTCHHHHHHHHT-------T------CCSHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--T
T ss_pred ----------HCCCHHHHHHHHh-------C------CCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHhhC--c
Confidence 7899999999995 1 1155668888888 999999999999999998874 5
Q ss_pred CcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003768 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA 397 (796)
Q Consensus 318 d~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~ 397 (796)
+...+ .+ ..+++..+...|++++|..+|+++... .+.+...|+.+..++
T Consensus 162 ~~~~~---~l---------------------------~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~ 210 (291)
T 3mkr_A 162 DATLT---QL---------------------------ATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACH 210 (291)
T ss_dssp TCHHH---HH---------------------------HHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHH
T ss_pred CcHHH---HH---------------------------HHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHH
Confidence 54211 00 022334445568999999999999987 467889999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 003768 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK-ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (796)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~-A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A 476 (796)
.+.|++++|...|++..+.. +-+..++..++..+...|+.++ |.++++.+.+.. |+... +.+...+.+.+|++
T Consensus 211 ~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~ 284 (291)
T 3mkr_A 211 MAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRL 284 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHH
Confidence 99999999999999987652 2356678889999999999876 678999888754 66443 33444555555554
Q ss_pred HH
Q 003768 477 YY 478 (796)
Q Consensus 477 ~~ 478 (796)
..
T Consensus 285 ~~ 286 (291)
T 3mkr_A 285 VL 286 (291)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.95 E-value=3.6e-08 Score=100.12 Aligned_cols=225 Identities=12% Similarity=0.006 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhc
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~ 271 (796)
..|..+-..+.+.|++++|+.+|+++.+.. .+...|..+-.++. ..|+.++|...+. +...
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~----------~~~~~~~A~~~~~-------~a~~ 66 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEY----------EKGEYETAISTLN-------DAVE 66 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHH----------HcccHHHHHHHHH-------HHHH
Confidence 577788889999999999999999999887 78889999988888 8899999999995 2221
Q ss_pred c-CCCC-C----cchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCccccc
Q 003768 272 S-RDMD-N----NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345 (796)
Q Consensus 272 ~-~gv~-d----~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~ 345 (796)
. .... + ...|..+-.. +...|++++|...|++..... |+
T Consensus 67 ~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~~--------------------------- 111 (258)
T 3uq3_A 67 QGREMRADYKVISKSFARIGNA------YHKLGDLKKTIEYYQKSLTEH--RT--------------------------- 111 (258)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--CC---------------------------
T ss_pred hCcccccchHHHHHHHHHHHHH------HHHcccHHHHHHHHHHHHhcC--ch---------------------------
Confidence 1 0110 1 3557777778 999999999999999887752 22
Q ss_pred ccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccH
Q 003768 346 DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (796)
Q Consensus 346 ~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty 425 (796)
-..+.+.|++++|.+.++++.... +.+...|..+...+...|++++|...+++..+.. ..+...|
T Consensus 112 -------------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 176 (258)
T 3uq3_A 112 -------------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGY 176 (258)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred -------------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHH
Confidence 123566788999999999988753 3356688889999999999999999999988763 2356788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 426 ~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..+-..|.+.|+.++|.+.++...+.. ..+...|..+-..+.+.|+.++|...|++..+.
T Consensus 177 ~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 177 SNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 889999999999999999999998764 234778899999999999999999999988765
No 29
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.95 E-value=4.7e-08 Score=111.16 Aligned_cols=84 Identities=12% Similarity=-0.087 Sum_probs=68.4
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
...+.++.++|...|+++.... ..+...|..+...|.+.|++++|++.|+++.+.. +-+...+..+-.++.
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~- 104 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELD-------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE- 104 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHhccHHHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH-
Confidence 4557789999999999986643 2345899999999999999999999999999764 346778888888888
Q ss_pred cccCCcccCCCCChhhHHHHHh
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFE 260 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~ 260 (796)
..|+.++|...|.
T Consensus 105 ---------~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 105 ---------SLGNFTDAMFDLS 117 (537)
T ss_dssp ---------HHTCHHHHHHHHH
T ss_pred ---------HcCCHHHHHHHHH
Confidence 7799999998884
No 30
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.93 E-value=5.9e-08 Score=98.83 Aligned_cols=199 Identities=10% Similarity=-0.034 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhc
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~ 271 (796)
..|..+...+...|++++|+++|+++.+.. +.+...+..+-..+. ..|+.++|...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~----------~~~~~~~A~~~~------------ 94 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQ----------TEMEPKLADEEY------------ 94 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHH------------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHH----------HcCCHHHHHHHH------------
Confidence 667778888999999999999999998753 334566666666655 556666666655
Q ss_pred cCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCC-CcceeccchhhhHHhhhhcCCCCcccccccccc
Q 003768 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS-NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (796)
Q Consensus 272 ~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~P-d~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~ 350 (796)
++..+.. | +...+
T Consensus 95 ------------------------------------~~a~~~~--~~~~~~~---------------------------- 108 (252)
T 2ho1_A 95 ------------------------------------RKALASD--SRNARVL---------------------------- 108 (252)
T ss_dssp ------------------------------------HHHHHHC--TTCHHHH----------------------------
T ss_pred ------------------------------------HHHHHHC--cCcHHHH----------------------------
Confidence 3333321 2 12222
Q ss_pred cccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH
Q 003768 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (796)
Q Consensus 351 ~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI 429 (796)
..+...|.+.|++++|.++|+++...+..| +...+..+...+...|++++|...+++..+.. ..+...|..+.
T Consensus 109 -----~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la 182 (252)
T 2ho1_A 109 -----NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMA 182 (252)
T ss_dssp -----HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred -----HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence 555666777888888888888877643444 45677778888888888888888888877653 22456777777
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 430 ~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..|...|+.++|.++++.+.+.. ..+...+..+...+.+.|+.++|..+++++...
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888888888888888877643 245667777888888888888888888888776
No 31
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.92 E-value=7.9e-08 Score=95.36 Aligned_cols=202 Identities=9% Similarity=-0.023 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhh
Q 003768 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (796)
Q Consensus 191 ~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~ 270 (796)
...|..+...+.+.|++++|+++|+.+.+.. +.+...|..+...+. ..|+.++|...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~---------- 66 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQ----------YLKVNDKAQESFR---------- 66 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH----------HcCChHHHHHHHH----------
Confidence 4678888889999999999999999998753 234666666666666 5566666666663
Q ss_pred ccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccc
Q 003768 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (796)
Q Consensus 271 ~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~ 350 (796)
+..... ..+...+
T Consensus 67 --------------------------------------~a~~~~-~~~~~~~---------------------------- 79 (225)
T 2vq2_A 67 --------------------------------------QALSIK-PDSAEIN---------------------------- 79 (225)
T ss_dssp --------------------------------------HHHHHC-TTCHHHH----------------------------
T ss_pred --------------------------------------HHHHhC-CCChHHH----------------------------
Confidence 222221 0112222
Q ss_pred cccchhhHHHHHHhc-cCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHH
Q 003768 351 NQDADEIRLSEDAKK-YAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (796)
Q Consensus 351 ~~~~~n~lI~~~~k~-g~~~~A~~lf~~M~~~gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~L 428 (796)
..+...|... |++++|.++|+++...+..|+ ..++..+...+...|++++|...++++.+.. ..+...+..+
T Consensus 80 -----~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 153 (225)
T 2vq2_A 80 -----NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKEL 153 (225)
T ss_dssp -----HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred -----HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHH
Confidence 4455666777 777777777777776322333 5567777777777777777777777776542 1235666667
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 429 I~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
...+.+.|+.++|.++++...+..-..+...+..+...+...|+.++|..+++.+...
T Consensus 154 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 154 ARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 7777777888888877777766432135566666777777777888887777777654
No 32
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.91 E-value=4.3e-08 Score=105.69 Aligned_cols=255 Identities=9% Similarity=-0.076 Sum_probs=200.4
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
...+.++.++|...|+.+.... ..+...|..+...|.+.|++++|++.|+++.+.. +.+..++..+...+.
T Consensus 73 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~- 143 (368)
T 1fch_A 73 RRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT- 143 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH-
Confidence 4557789999999999996542 2245789999999999999999999999999764 447888999988888
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhh---------------cccCccccccccccCChHHH
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDY---------------GSSPMIDKLESNSSYRFDDL 303 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~---------------LI~~~~~~~~~~~~g~~~~A 303 (796)
..|+.++|...|. ++... .-.+...+.. .+.. +...|++++|
T Consensus 144 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A 200 (368)
T 1fch_A 144 ---------NESLQRQACEILR-------DWLRY-TPAYAHLVTPAEEGAGGAGLGPSKRILGS------LLSDSLFLEV 200 (368)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHT-STTTGGGCC---------------CTTHH------HHHHHHHHHH
T ss_pred ---------HcCCHHHHHHHHH-------HHHHh-CcCcHHHHHHHHHHhhhhcccHHHHHHHH------HhhcccHHHH
Confidence 8899999999995 33332 1112222221 1233 4478889999
Q ss_pred HHHHHHHHHcCCCCC---cceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHh
Q 003768 304 DSTFNEKENLGQFSN---GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL 380 (796)
Q Consensus 304 ~~lf~eM~~~Gi~Pd---~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~ 380 (796)
...|+++.... |+ ...+ ..+...|.+.|++++|.+.|+++..
T Consensus 201 ~~~~~~a~~~~--p~~~~~~~~---------------------------------~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 201 KELFLAAVRLD--PTSIDPDVQ---------------------------------CGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp HHHHHHHHHHS--TTSCCHHHH---------------------------------HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--cCcccHHHH---------------------------------HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99998887753 33 2222 7788899999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCC------
Q 003768 381 DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY------ 454 (796)
Q Consensus 381 ~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~------ 454 (796)
.. +.+..+|..+...+...|++++|...|+++.+.. ..+...|..+-..|.+.|+.++|.+.|+...+..-.
T Consensus 246 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 323 (368)
T 1fch_A 246 VR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 323 (368)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred hC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccc
Confidence 53 4467899999999999999999999999988752 235678888999999999999999999988764211
Q ss_pred ----CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003768 455 ----PEEPELEALLRVSVEAGKGDRVYYLLHK 482 (796)
Q Consensus 455 ----pd~~ty~~LI~~~~~~G~~~~A~~ll~~ 482 (796)
.....|..|..+|...|+.++|..++.+
T Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 324 EGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred cccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 1268899999999999999999988763
No 33
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.82 E-value=5.5e-07 Score=102.25 Aligned_cols=255 Identities=11% Similarity=0.012 Sum_probs=196.2
Q ss_pred CCcchHHHHHHHHHhcCCCCCCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 164 TNDSGQYKVRGITDEKGSKKSKKDRSE-----QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 164 ~~~~~A~~vf~~M~~~g~~~~~g~~Pd-----~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
++..+|..+|+.+.... |+ .++ ..+|..+-..+...|++++|+..|+.+.+. .|+...|..+-..+.
T Consensus 216 ~~~~~A~~~~~~~l~~~--p~---~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~- 287 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSAN--TV---DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLA- 287 (537)
T ss_dssp HHHHHHHHHHHHHHC----CC---CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHC--CC---cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHH-
Confidence 46778999999985422 11 111 235667778889999999999999999975 466777777777777
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd 318 (796)
..|++++|...|. +.... .-.+...|..+... +...|++++|...|++..... |+
T Consensus 288 ---------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~~ 342 (537)
T 3fp2_A 288 ---------DKENSQEFFKFFQ-------KAVDL-NPEYPPTYYHRGQM------YFILQDYKNAKEDFQKAQSLN--PE 342 (537)
T ss_dssp ---------CSSCCHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred ---------HhcCHHHHHHHHH-------HHhcc-CCCCHHHHHHHHHH------HHhcCCHHHHHHHHHHHHHhC--CC
Confidence 8899999999995 33332 22255668888888 999999999999999988753 32
Q ss_pred -cceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003768 319 -GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA 397 (796)
Q Consensus 319 -~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~ 397 (796)
...+ ..+...|.+.|++++|.++|+++.... +.+..++..+...+
T Consensus 343 ~~~~~---------------------------------~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 388 (537)
T 3fp2_A 343 NVYPY---------------------------------IQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEIL 388 (537)
T ss_dssp CSHHH---------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred CHHHH---------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 2222 678888999999999999999998764 44567899999999
Q ss_pred HhcCChHHHHHHHHHHHHCC-----CCCCcccHHHHHHHHHHc----------CChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003768 398 MSMGDGDMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNN----------GDVDKACSVEEHMLEHGVYPEEPELEA 462 (796)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g-----i~Pd~~ty~~LI~~~~~~----------G~~~~A~~l~~~M~~~gv~pd~~ty~~ 462 (796)
...|++++|...|+++.+.. ..-....+..+-..+.+. |+.++|...|+...+.. ..+...|..
T Consensus 389 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~ 467 (537)
T 3fp2_A 389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIG 467 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 99999999999999987542 111122233344567777 99999999999998754 235788899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 003768 463 LLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 463 LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
|...|.+.|+.++|...|++..+.
T Consensus 468 l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 468 LAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999999886
No 34
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.79 E-value=4.4e-07 Score=92.31 Aligned_cols=179 Identities=8% Similarity=-0.048 Sum_probs=140.1
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCC-cceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd-~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~ 372 (796)
+...|++++|...|+++.... |+ ...+ ..+...|.+.|++++|.
T Consensus 47 ~~~~~~~~~A~~~~~~al~~~--~~~~~~~---------------------------------~~la~~~~~~~~~~~A~ 91 (252)
T 2ho1_A 47 YLQRGNTEQAKVPLRKALEID--PSSADAH---------------------------------AALAVVFQTEMEPKLAD 91 (252)
T ss_dssp HHHTTCTGGGHHHHHHHHHHC--TTCHHHH---------------------------------HHHHHHHHHTTCHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC--CChHHHH---------------------------------HHHHHHHHHcCCHHHHH
Confidence 777888888888888887653 33 2233 66778889999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 373 ~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
++|+++.... +.+..++..+...|...|++++|.++++++.+.+..| +...|..+...+...|+.++|.+.+++..+.
T Consensus 92 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 92 EEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999988764 3478899999999999999999999999988744455 4567788888999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhHHHH-HHHHHhchHHHHhc
Q 003768 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTADV-IAKWFNSKEAARLG 511 (796)
Q Consensus 452 gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~-p~t~~~-I~~~~~~~~~~~a~ 511 (796)
. ..+...+..+...|...|+.++|..+|+++... .+. +..+.. ...+...+...++.
T Consensus 171 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~ 229 (252)
T 2ho1_A 171 N-RNQPSVALEMADLLYKEREYVPARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAA 229 (252)
T ss_dssp C-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred C-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHH
Confidence 4 235788999999999999999999999999875 333 334433 44444455544443
No 35
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.78 E-value=4.5e-07 Score=89.76 Aligned_cols=164 Identities=9% Similarity=-0.000 Sum_probs=134.5
Q ss_pred hhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC-cceeccchhhhHHhhhhcCCCCcccccccccccccchhhH
Q 003768 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIR 358 (796)
Q Consensus 280 tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd-~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~l 358 (796)
.|..+... +...|++++|..+|++..+.. |+ ...+ ..+
T Consensus 10 ~~~~~~~~------~~~~~~~~~A~~~~~~~~~~~--~~~~~~~---------------------------------~~l 48 (225)
T 2vq2_A 10 IKTQLAME------YMRGQDYRQATASIEDALKSD--PKNELAW---------------------------------LVR 48 (225)
T ss_dssp HHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TTCHHHH---------------------------------HHH
T ss_pred HHHHHHHH------HHHHhhHHHHHHHHHHHHHhC--ccchHHH---------------------------------HHH
Confidence 34455555 778888999999998887753 33 2233 667
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcC
Q 003768 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM-GDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNG 436 (796)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~-g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G 436 (796)
...|...|++++|.++|++..... +.+..++..+...+... |++++|..+++++.+.+..|+ ...|..+...+...|
T Consensus 49 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 127 (225)
T 2vq2_A 49 AEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQG 127 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcC
Confidence 788899999999999999988754 44788999999999999 999999999999988433343 567888888999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+.++|.+.++++.+.. ..+...+..+...+.+.|+.++|..++++....
T Consensus 128 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 128 QFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999998754 234788899999999999999999999998876
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.74 E-value=4.4e-08 Score=100.75 Aligned_cols=84 Identities=11% Similarity=-0.074 Sum_probs=60.4
Q ss_pred cCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccC
Q 003768 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (796)
Q Consensus 163 ~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~ 242 (796)
.++.++|...|+.+....... ...+...|..+...|.+.|++++|+..|+++.+.. +.+...|..+-..+.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~----- 88 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALT---DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLT----- 88 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH-----
T ss_pred cchHHHHHHHHHHHHhccccc---CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHH-----
Confidence 456778999999986542110 11234788888899999999999999999998764 235677777777666
Q ss_pred CcccCCCCChhhHHHHHh
Q 003768 243 VVKPAKSGSGMRTLDTFE 260 (796)
Q Consensus 243 ~~~~~k~G~~~~A~~vf~ 260 (796)
..|++++|...|.
T Consensus 89 -----~~~~~~~A~~~~~ 101 (275)
T 1xnf_A 89 -----QAGNFDAAYEAFD 101 (275)
T ss_dssp -----HTTCHHHHHHHHH
T ss_pred -----HccCHHHHHHHHH
Confidence 5667777777663
No 37
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.67 E-value=3.3e-07 Score=94.12 Aligned_cols=222 Identities=9% Similarity=-0.090 Sum_probs=170.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCc
Q 003768 202 SKRGDVMGAIRLYDKAQREGIK---LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN 278 (796)
Q Consensus 202 ~k~G~~~~A~~lf~~M~~~Gi~---pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~ 278 (796)
...|++++|+..|+++.+.... .+..+|..+-..+. ..|++++|...|. +.... .-.+.
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~al~~-~~~~~ 77 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYD----------SLGLRALARNDFS-------QALAI-RPDMP 77 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHHH-CCCCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH----------HcccHHHHHHHHH-------HHHHc-CCCcH
Confidence 3457899999999999976421 24567777777777 7899999999995 43332 22256
Q ss_pred chhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC-cceeccchhhhHHhhhhcCCCCcccccccccccccchhh
Q 003768 279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (796)
Q Consensus 279 ~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd-~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~ 357 (796)
..|..+-.. +...|++++|...|++..+.. |+ ...+ ..
T Consensus 78 ~~~~~la~~------~~~~~~~~~A~~~~~~al~~~--~~~~~~~---------------------------------~~ 116 (275)
T 1xnf_A 78 EVFNYLGIY------LTQAGNFDAAYEAFDSVLELD--PTYNYAH---------------------------------LN 116 (275)
T ss_dssp HHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TTCTHHH---------------------------------HH
T ss_pred HHHHHHHHH------HHHccCHHHHHHHHHHHHhcC--ccccHHH---------------------------------HH
Confidence 678888888 999999999999999988753 22 2222 77
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~ 437 (796)
+...|.+.|++++|.+.|+++... .|+...+..++..+...|+.++|...+++.... ..++...+. ++..+...++
T Consensus 117 la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~ 192 (275)
T 1xnf_A 117 RGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGWN-IVEFYLGNIS 192 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHHH-HHHHHTTSSC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHHH-HHHHHHHhcC
Confidence 788899999999999999999875 355555566666777889999999999887765 234444444 7777888889
Q ss_pred hHHHHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 438 VDKACSVEEHMLEHGVY--P-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 438 ~~~A~~l~~~M~~~gv~--p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.++|.+.+....+.... | +...|..+-..|.+.|+.++|...|++....
T Consensus 193 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 193 EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 99999999887654311 1 1577888999999999999999999999876
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.67 E-value=9e-06 Score=84.05 Aligned_cols=226 Identities=12% Similarity=-0.024 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhh
Q 003768 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (796)
Q Consensus 191 ~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~ 270 (796)
..++..+=..|.+.|++++|+..|.+..+.+ +...+..|-..+.... ...|+.++|...|. +..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~------~~~~~~~~A~~~~~-------~a~ 69 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQ------GVEKNLKKAASFYA-------KAC 69 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS------SSCCCHHHHHHHHH-------HHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC------CcCCCHHHHHHHHH-------HHH
Confidence 3567777778889999999999999999843 4566666666666210 02789999999995 333
Q ss_pred ccCCCCCcchhhhcccCccccccccc----cCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccc
Q 003768 271 DSRDMDNNGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKD 346 (796)
Q Consensus 271 ~~~gv~d~~tyn~LI~~~~~~~~~~~----~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~ 346 (796)
+. + +...+..+-.. |.. .+++++|...|++..+.+ +...+
T Consensus 70 ~~-~--~~~a~~~lg~~------~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~------------------------ 113 (273)
T 1ouv_A 70 DL-N--YSNGCHLLGNL------YYSGQGVSQNTNKALQYYSKACDLK---YAEGC------------------------ 113 (273)
T ss_dssp HT-T--CHHHHHHHHHH------HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH------------------------
T ss_pred HC-C--CHHHHHHHHHH------HhCCCCcccCHHHHHHHHHHHHHcC---CccHH------------------------
Confidence 22 1 44445555445 666 899999999999888775 22222
Q ss_pred cccccccchhhHHHHHHh----ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCC
Q 003768 347 WSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGI 418 (796)
Q Consensus 347 ~~~~~~~~~n~lI~~~~k----~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~----~g~~~~A~~l~~~M~~~gi 418 (796)
..+-..|.+ .+++++|.+.|++..+.+ +...+..+-..|.. .++.++|...|++..+.+
T Consensus 114 ---------~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~- 180 (273)
T 1ouv_A 114 ---------ASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK- 180 (273)
T ss_dssp ---------HHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred ---------HHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 445556666 899999999999999876 67788888888888 999999999999988774
Q ss_pred CCCcccHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhC
Q 003768 419 NPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 419 ~Pd~~ty~~LI~~~~~----~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~----~G~~~~A~~ll~~M~~~ 486 (796)
+...+..+-..|.. .++.++|.+.|+...+.+ | ...+..|-..|.. .++.++|...|++..+.
T Consensus 181 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 181 --DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp --CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 45667777788888 999999999999998875 3 6777788888888 89999999999998877
No 39
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.66 E-value=5.3e-07 Score=94.10 Aligned_cols=245 Identities=8% Similarity=-0.044 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhh
Q 003768 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-------GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVS 262 (796)
Q Consensus 190 d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~-------Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~ 262 (796)
+..+|..+-..+...|++++|+.+|+++.+. .-......+..+-..+. ..|++++|...+.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~----------~~g~~~~A~~~~~-- 93 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR----------DQNKYKDAANLLN-- 93 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH----------HTTCHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH----------HCCCHHHHHHHHH--
Confidence 3467888889999999999999999999863 22333455666666666 6788888887774
Q ss_pred ccCchhhhcc------CCCC-CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhh
Q 003768 263 TMNSTELGDS------RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLE 335 (796)
Q Consensus 263 ~~~s~em~~~------~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~ 335 (796)
+.... ..-+ ....|..+... +...|++++|...|++..+.. .
T Consensus 94 -----~al~~~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~a~~~~--------------------~ 142 (311)
T 3nf1_A 94 -----DALAIREKTLGKDHPAVAATLNNLAVL------YGKRGKYKEAEPLCKRALEIR--------------------E 142 (311)
T ss_dssp -----HHHHHHHHHHCTTCHHHHHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHH--------------------H
T ss_pred -----HHHHHHHHHhCCCChHHHHHHHHHHHH------HHHcCcHHHHHHHHHHHHHHH--------------------H
Confidence 22111 0011 22335555555 556666666666665554321 0
Q ss_pred cC-CCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 003768 336 RG-PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD------EVPM-NEASLTAVGRMAMSMGDGDMAF 407 (796)
Q Consensus 336 ~m-~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~------gi~p-d~~ty~~LI~~~~~~g~~~~A~ 407 (796)
.. .++... .......+-..|...|++++|.++|++.... +-.| ...++..+...|...|++++|.
T Consensus 143 ~~~~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 215 (311)
T 3nf1_A 143 KVLGKDHPD-------VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE 215 (311)
T ss_dssp HHHCTTCHH-------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhcCCCChH-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 00 000000 0011223334455556666666666555442 1112 2234555556666666666666
Q ss_pred HHHHHHHHC-------CCCCCcccHHHHHHHHH-------HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003768 408 DMVKRMKSL-------GINPRLRSYGPALSVFC-------NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (796)
Q Consensus 408 ~l~~~M~~~-------gi~Pd~~ty~~LI~~~~-------~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~ 473 (796)
..++++.+. ...+........+..+. ..+...+|...+....... ..+..+|..|...|.+.|+.
T Consensus 216 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 294 (311)
T 3nf1_A 216 TLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKF 294 (311)
T ss_dssp HHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCH
Confidence 666555432 12222222222222222 2222333333333332211 12345677888888899999
Q ss_pred hHHHHHHHHHHh
Q 003768 474 DRVYYLLHKLRT 485 (796)
Q Consensus 474 ~~A~~ll~~M~~ 485 (796)
++|..+|++..+
T Consensus 295 ~~A~~~~~~al~ 306 (311)
T 3nf1_A 295 EAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.64 E-value=7.8e-07 Score=90.06 Aligned_cols=217 Identities=10% Similarity=0.027 Sum_probs=168.9
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG--IKLG----QYHYNVL 232 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~G--i~pd----~~tyn~L 232 (796)
.....++.++|...|++..... .+. ..|..+-..|.+.|++++|+..|+.+.... ..|+ ...|..+
T Consensus 14 ~~~~~~~~~~A~~~~~~a~~~~--~~~------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 14 KFYKARQFDEAIEHYNKAWELH--KDI------TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--CCT------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhh--ccH------HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3446788999999999987665 333 899999999999999999999999988542 2223 5777888
Q ss_pred HHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHH
Q 003768 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN 312 (796)
Q Consensus 233 L~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~ 312 (796)
-..+. +.|+.++|...|. +.... .+. -.. +.+.|++++|...++++..
T Consensus 86 ~~~~~----------~~~~~~~A~~~~~-------~a~~~---~~~------~~~------~~~~~~~~~a~~~~~~~~~ 133 (258)
T 3uq3_A 86 GNAYH----------KLGDLKKTIEYYQ-------KSLTE---HRT------ADI------LTKLRNAEKELKKAEAEAY 133 (258)
T ss_dssp HHHHH----------HTTCHHHHHHHHH-------HHHHH---CCC------HHH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----------HcccHHHHHHHHH-------HHHhc---Cch------hHH------HHHHhHHHHHHHHHHHHHH
Confidence 88888 7899999999995 33221 000 112 6677888999999988876
Q ss_pred cCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003768 313 LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTA 392 (796)
Q Consensus 313 ~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~ 392 (796)
.. |+.. ..| ..+...+...|++++|.+.|++..... +.+..+|..
T Consensus 134 ~~--~~~~---------------------~~~-----------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 178 (258)
T 3uq3_A 134 VN--PEKA---------------------EEA-----------RLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSN 178 (258)
T ss_dssp CC--HHHH---------------------HHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cC--cchH---------------------HHH-----------HHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHH
Confidence 52 2211 111 667778899999999999999998754 446889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
+...|...|++++|...|++..+.. ..+...|..+-..+.+.|+.++|.+.++...+.
T Consensus 179 l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 179 RAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999999988763 234677888889999999999999999987653
No 41
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.62 E-value=4.4e-07 Score=91.30 Aligned_cols=200 Identities=16% Similarity=0.084 Sum_probs=130.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhh
Q 003768 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (796)
Q Consensus 190 d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em 269 (796)
....|..+-..+.+.|++++|+.+|+++.+.. +.+...+..+-..+. +.|+.++|...|
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~----------~~~~~~~A~~~~---------- 80 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLS----------SVNELERALAFY---------- 80 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCCHHHHHHHH----------
Confidence 33677777788889999999999999988642 234555555555555 455555555555
Q ss_pred hccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC-cceeccchhhhHHhhhhcCCCCcccccccc
Q 003768 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (796)
Q Consensus 270 ~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd-~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~ 348 (796)
++..... |+ ...+
T Consensus 81 --------------------------------------~~~~~~~--~~~~~~~-------------------------- 94 (243)
T 2q7f_A 81 --------------------------------------DKALELD--SSAATAY-------------------------- 94 (243)
T ss_dssp --------------------------------------HHHHHHC--TTCHHHH--------------------------
T ss_pred --------------------------------------HHHHHcC--CcchHHH--------------------------
Confidence 3333321 21 2222
Q ss_pred cccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHH
Q 003768 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (796)
Q Consensus 349 ~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~L 428 (796)
..+...|...|++++|.++|+++.+.. +.+..++..+...+...|++++|..+++++.+.. ..+...+..+
T Consensus 95 -------~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 165 (243)
T 2q7f_A 95 -------YGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQF 165 (243)
T ss_dssp -------HHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred -------HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 556667778888888888888887654 3467788888888999999999999998887652 2356677778
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 429 I~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
...+.+.|+.++|.+.++...+.. ..+...|..+...|.+.|+.++|...+++..+.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 166 GMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 888889999999999998887754 235778888889999999999999999998876
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.62 E-value=7.1e-07 Score=89.79 Aligned_cols=187 Identities=7% Similarity=-0.054 Sum_probs=133.4
Q ss_pred chhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC-cceeccchhhhHHhhhhcCCCCcccccccccccccchhh
Q 003768 279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (796)
Q Consensus 279 ~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd-~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~ 357 (796)
..|..+-.. +...|++++|..+|++..... |+ ...+ ..
T Consensus 24 ~~~~~~a~~------~~~~~~~~~A~~~~~~~l~~~--~~~~~~~---------------------------------~~ 62 (243)
T 2q7f_A 24 MTGGQQMGR------GSEFGDYEKAAEAFTKAIEEN--KEDAIPY---------------------------------IN 62 (243)
T ss_dssp ------------------------CCTTHHHHHTTC--TTCHHHH---------------------------------HH
T ss_pred HHHHHHHHH------HHHhhCHHHHHHHHHHHHHhC--cccHHHH---------------------------------HH
Confidence 345555556 888899999999999887743 43 3333 66
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~ 437 (796)
+...|.+.|++++|.+.|++..... +.+..++..+...+...|++++|..+++++.+.. ..+...|..+...+.+.|+
T Consensus 63 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 140 (243)
T 2q7f_A 63 FANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQ 140 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc
Confidence 7788899999999999999988764 3478899999999999999999999999988763 3456778888899999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhHHHH-HHHHHhchHHHHhc
Q 003768 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTADV-IAKWFNSKEAARLG 511 (796)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~-p~t~~~-I~~~~~~~~~~~a~ 511 (796)
.++|.++++.+.+.. ..+...+..+...+.+.|++++|...|++.... .+. +.++.. ...+...+...+|.
T Consensus 141 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 213 (243)
T 2q7f_A 141 PKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKAL 213 (243)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHH
Confidence 999999999988754 236788899999999999999999999998876 333 334433 44555555544443
No 43
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.54 E-value=1.1e-05 Score=85.48 Aligned_cols=227 Identities=10% Similarity=0.007 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCh-------hhHHHHHhhhccCchhhhccCCCCCcch
Q 003768 208 MGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSG-------MRTLDTFEVSTMNSTELGDSRDMDNNGQ 280 (796)
Q Consensus 208 ~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~-------~~A~~vf~~~~~~s~em~~~~gv~d~~t 280 (796)
++|+.+|+++.... +-+...|..+...+...+. ...+.|++ ++|..+|. .......-.+...
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~---~l~~~g~~~~~~~~~~~A~~~~~-------rAl~~~~p~~~~~ 101 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSK---LLAEKGDMNNAKLFSDEAANIYE-------RAISTLLKKNMLL 101 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH---HHHHTSCCHHHHHHHHHHHHHHH-------HHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhch---hhhhccchhhcccchHHHHHHHH-------HHHHHhCcccHHH
Confidence 68899999998642 3456677777766642100 00023665 88999995 3332101114456
Q ss_pred hhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHH
Q 003768 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS 360 (796)
Q Consensus 281 yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~ 360 (796)
|..+... +.+.|++++|..+|++..+. .|+.... .| ..+..
T Consensus 102 ~~~~~~~------~~~~~~~~~A~~~~~~al~~--~p~~~~~--------------------~~-----------~~~~~ 142 (308)
T 2ond_A 102 YFAYADY------EESRMKYEKVHSIYNRLLAI--EDIDPTL--------------------VY-----------IQYMK 142 (308)
T ss_dssp HHHHHHH------HHHTTCHHHHHHHHHHHHTS--SSSCTHH--------------------HH-----------HHHHH
T ss_pred HHHHHHH------HHhcCCHHHHHHHHHHHHhc--cccCccH--------------------HH-----------HHHHH
Confidence 8888888 88999999999999998874 4543210 12 77778
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChH
Q 003768 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM-SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~-~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~ 439 (796)
.+.+.|++++|..+|++..+.. +++...|........ ..|+.++|..+|+...+.. .-+...|..++..+.+.|+.+
T Consensus 143 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~ 220 (308)
T 2ond_A 143 FARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDN 220 (308)
T ss_dssp HHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHH
Confidence 8889999999999999998764 334455554444432 3699999999999987652 225677888888999999999
Q ss_pred HHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 440 KACSVEEHMLEHG-VYP--EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 440 ~A~~l~~~M~~~g-v~p--d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+|..+|+...... +.| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 221 ~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 221 NTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999873 455 4678999999999999999999999999876
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.53 E-value=1.7e-06 Score=87.13 Aligned_cols=201 Identities=10% Similarity=-0.050 Sum_probs=142.7
Q ss_pred CCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHH
Q 003768 223 KLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDD 302 (796)
Q Consensus 223 ~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~ 302 (796)
+++...+..+-..+. ..|++++|...|. +.... .-.+...|..+-.. +.+.|++++
T Consensus 2 p~~~~~~~~lg~~~~----------~~g~~~~A~~~~~-------~al~~-~p~~~~a~~~lg~~------~~~~g~~~~ 57 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLY----------ALGRYDAALTLFE-------RALKE-NPQDPEALYWLART------QLKLGLVNP 57 (217)
T ss_dssp --CCHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHTT-SSSCHHHHHHHHHH------HHHTTCHHH
T ss_pred CCcHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHH
Confidence 345566666666666 7899999999994 33321 11255567777777 889999999
Q ss_pred HHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhc-----------cCHHHH
Q 003768 303 LDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKK-----------YAFQRG 371 (796)
Q Consensus 303 A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~-----------g~~~~A 371 (796)
|...|++..+.. |+.... | ..+-..|.+. |++++|
T Consensus 58 A~~~~~~al~~~--P~~~~a---------------------~-----------~~lg~~~~~~~~~~~~~~~~~g~~~~A 103 (217)
T 2pl2_A 58 ALENGKTLVART--PRYLGG---------------------Y-----------MVLSEAYVALYRQAEDRERGKGYLEQA 103 (217)
T ss_dssp HHHHHHHHHHHC--TTCHHH---------------------H-----------HHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHH---------------------H-----------HHHHHHHHHhhhhhhhhcccccCHHHH
Confidence 999999887753 433211 1 4555666677 999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 372 ~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
...|++..+.. +-+...|..+-..+...|++++|...|++..+.. .+...+..+-..|...|+.++|...|+...+.
T Consensus 104 ~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 104 LSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999988753 3367889999999999999999999999998887 67888888999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 452 gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
. +-+...+..+-..+.+.|+.++|...|++...
T Consensus 181 ~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 181 A-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp S-TTCHHHHHHHHHHHTC----------------
T ss_pred C-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 4 23567788888999999999999998887543
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.43 E-value=3.2e-06 Score=85.04 Aligned_cols=198 Identities=14% Similarity=-0.043 Sum_probs=140.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhh
Q 003768 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (796)
Q Consensus 190 d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em 269 (796)
+...+..+-..+.+.|++++|+..|++..+.. +-+...|..+-.++. ..|+.++|...|. ..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~----------~~g~~~~A~~~~~-------~a 65 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQL----------KLGLVNPALENGK-------TL 65 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HH
Confidence 34678888889999999999999999998653 335677777777777 7899999999995 33
Q ss_pred hccCCCCCcchhhhcccCcccccccccc-----------CChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCC
Q 003768 270 GDSRDMDNNGQLDYGSSPMIDKLESNSS-----------YRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGP 338 (796)
Q Consensus 270 ~~~~gv~d~~tyn~LI~~~~~~~~~~~~-----------g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~ 338 (796)
... .-.+...|..+-.. +... |++++|...|++..+.. |+...
T Consensus 66 l~~-~P~~~~a~~~lg~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~----------------- 119 (217)
T 2pl2_A 66 VAR-TPRYLGGYMVLSEA------YVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAP----------------- 119 (217)
T ss_dssp HHH-CTTCHHHHHHHHHH------HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHH-----------------
T ss_pred HHh-CCCcHHHHHHHHHH------HHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHH-----------------
Confidence 221 11144556666666 7777 88888988888777652 33211
Q ss_pred CCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003768 339 DDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (796)
Q Consensus 339 pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi 418 (796)
.| ..+-..|...|++++|.+.|++..+.. .+...+..+-.+|...|++++|...|++..+..
T Consensus 120 ----~~-----------~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 181 (217)
T 2pl2_A 120 ----LH-----------LQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA- 181 (217)
T ss_dssp ----HH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-
T ss_pred ----HH-----------HHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 12 556677889999999999999998877 788999999999999999999999999988752
Q ss_pred CCCcccHHHHHHHHHHcCChHHHHHHHHHHH
Q 003768 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (796)
Q Consensus 419 ~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~ 449 (796)
+-+...+..+-..+.+.|+.++|.+.|+...
T Consensus 182 P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 182 PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp TTCHHHHHHHHHHHTC---------------
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 2345677778888999999999999887653
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.42 E-value=7.6e-06 Score=83.88 Aligned_cols=232 Identities=10% Similarity=-0.058 Sum_probs=171.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccC
Q 003768 194 LRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR 273 (796)
Q Consensus 194 yn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~ 273 (796)
+-..-..+.+.|++++|+.+|+++.+.. +-+...+..+-.++. ..|++++|...+. +.....
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~a~~~~ 67 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYY----------ELAKYDLAQKDIE-------TYFSKV 67 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHH----------HTTCHHHHHHHHH-------HHHTTS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH----------HHhhHHHHHHHHH-------HHHhcc
Confidence 4445567889999999999999998753 223446777777777 7899999999995 444321
Q ss_pred CCCCc--chhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCccccccccccc
Q 003768 274 DMDNN--GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (796)
Q Consensus 274 gv~d~--~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~ 351 (796)
.-++. ..|..+-.. +...|++++|...|++..+.. |+.. ..|
T Consensus 68 ~~~~~~~~~~~~lg~~------~~~~~~~~~A~~~~~~a~~~~--~~~~---------------------~~~------- 111 (272)
T 3u4t_A 68 NATKAKSADFEYYGKI------LMKKGQDSLAIQQYQAAVDRD--TTRL---------------------DMY------- 111 (272)
T ss_dssp CTTTCCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHS--TTCT---------------------HHH-------
T ss_pred CchhHHHHHHHHHHHH------HHHcccHHHHHHHHHHHHhcC--cccH---------------------HHH-------
Confidence 11121 236777777 899999999999999887752 2211 112
Q ss_pred ccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHH
Q 003768 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALS 430 (796)
Q Consensus 352 ~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~ 430 (796)
..+-..|.+.|++++|.+.|++.... -+-+..+|..+...+...+++++|...|++..+. .|+ ...|..+-.
T Consensus 112 ----~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~ 184 (272)
T 3u4t_A 112 ----GQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRAR 184 (272)
T ss_dssp ----HHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred ----HHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 67788899999999999999988876 2446677777773455566999999999998875 344 566666777
Q ss_pred HHHHcCC---hHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 431 VFCNNGD---VDKACSVEEHMLEHG-VYPE------EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 431 ~~~~~G~---~~~A~~l~~~M~~~g-v~pd------~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+...|+ .++|...+++..+.. -.|+ ...|..|-..|.+.|+.++|...|++..+.
T Consensus 185 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 185 ANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 7777888 888888888876541 1233 257788888899999999999999999876
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.37 E-value=1.2e-05 Score=82.32 Aligned_cols=228 Identities=8% Similarity=-0.083 Sum_probs=166.2
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG--QYHYNVLLYLC 236 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd--~~tyn~LL~a~ 236 (796)
...+.++.++|...|++..+... + +...|..+...|.+.|++++|+..|++....+-.|+ ...|..+-..+
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~p--~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKKY--N-----SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTC--C-----CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCC--C-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 34567889999999999865431 1 124788888899999999999999999998432222 33477777777
Q ss_pred HccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCC
Q 003768 237 SSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF 316 (796)
Q Consensus 237 ~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~ 316 (796)
. ..|+.++|...|. +.... .-.+...|..+-.. +...|++++|...|++..+. .
T Consensus 85 ~----------~~~~~~~A~~~~~-------~a~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~al~~--~ 138 (272)
T 3u4t_A 85 M----------KKGQDSLAIQQYQ-------AAVDR-DTTRLDMYGQIGSY------FYNKGNFPLAIQYMEKQIRP--T 138 (272)
T ss_dssp H----------HTTCHHHHHHHHH-------HHHHH-STTCTHHHHHHHHH------HHHTTCHHHHHHHHGGGCCS--S
T ss_pred H----------HcccHHHHHHHHH-------HHHhc-CcccHHHHHHHHHH------HHHccCHHHHHHHHHHHhhc--C
Confidence 7 7899999999995 33322 11255667778777 99999999999998876554 2
Q ss_pred CCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003768 317 SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM 396 (796)
Q Consensus 317 Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~ 396 (796)
|+.... | ..+-..+...+++++|.+.|++..+.. +.+...+..+...
T Consensus 139 ~~~~~~---------------------~-----------~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~ 185 (272)
T 3u4t_A 139 TTDPKV---------------------F-----------YELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARA 185 (272)
T ss_dssp CCCHHH---------------------H-----------HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred CCcHHH---------------------H-----------HHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 322111 1 233313344559999999999998753 3347788888899
Q ss_pred HHhcCC---hHHHHHHHHHHHHCC-CCCCc------ccHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003768 397 AMSMGD---GDMAFDMVKRMKSLG-INPRL------RSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 397 ~~~~g~---~~~A~~l~~~M~~~g-i~Pd~------~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
+...|+ .++|...+++..+.. -.|+. ..|..+-..|.+.|+.++|.+.|+...+..
T Consensus 186 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 186 NAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 998888 888999998876541 22442 567778888999999999999999988754
No 48
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.36 E-value=1.3e-05 Score=76.17 Aligned_cols=156 Identities=15% Similarity=0.049 Sum_probs=123.4
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+...|++++|...|+++.... |+. ...| ..+...+...|++++|.+
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~--~~~---------------------~~~~-----------~~~~~~~~~~~~~~~A~~ 63 (186)
T 3as5_A 18 HAKAGRYSQAVMLLEQVYDAD--AFD---------------------VDVA-----------LHLGIAYVKTGAVDRGTE 63 (186)
T ss_dssp HHHHTCHHHHHHHHTTTCCTT--SCC---------------------HHHH-----------HHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC--ccC---------------------hHHH-----------HHHHHHHHHcCCHHHHHH
Confidence 667788888888777654431 211 1122 667778889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 003768 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv 453 (796)
+|+++.... +.+..++..+...+...|++++|.+.++++.+.. ..+...+..+...+...|+.++|.++++...+..
T Consensus 64 ~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 140 (186)
T 3as5_A 64 LLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR- 140 (186)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-
Confidence 999988753 4467888999999999999999999999987762 3456777888888999999999999999988764
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 454 ~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..+...+..+...+...|+.++|...+++....
T Consensus 141 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 141 PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 345778889999999999999999999887664
No 49
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.35 E-value=1.3e-05 Score=71.66 Aligned_cols=128 Identities=16% Similarity=0.121 Sum_probs=110.3
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+...+...|++++|.++|+++.... +.+..++..+...+...|++++|..+++++...+ ..+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 667788899999999999999998754 3467889999999999999999999999988763 23566788888999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
|+.++|.++++++.+.. ..+...+..+...+.+.|+.++|...|.++...
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999998764 235778889999999999999999999998765
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.33 E-value=7e-05 Score=77.26 Aligned_cols=217 Identities=13% Similarity=-0.006 Sum_probs=165.4
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSK----RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k----~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a 235 (796)
....++.++|.+.|+...+.+ +...+..+-..|.+ .|++++|+..|++..+.+ +...+..|=..
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 83 (273)
T 1ouv_A 16 SYKEKDFTQAKKYFEKACDLK---------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL 83 (273)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 345678899999999986522 23677778888899 999999999999999887 67777777777
Q ss_pred HHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccc----cCChHHHHHHHHHHH
Q 003768 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKE 311 (796)
Q Consensus 236 ~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~----~g~~~~A~~lf~eM~ 311 (796)
|..... ..|+.++|...|. ..... + +...+..+-.. |.. .+++++|...|++..
T Consensus 84 ~~~g~~------~~~~~~~A~~~~~-------~a~~~-~--~~~a~~~lg~~------~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 84 YYSGQG------VSQNTNKALQYYS-------KACDL-K--YAEGCASLGGI------YHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHHTSS------SCCCHHHHHHHHH-------HHHHT-T--CHHHHHHHHHH------HHHCSSSCCCHHHHHHHHHHHH
T ss_pred HhCCCC------cccCHHHHHHHHH-------HHHHc-C--CccHHHHHHHH------HHcCCCcccCHHHHHHHHHHHH
Confidence 772100 2789999999995 33322 1 44445555455 666 899999999999988
Q ss_pred HcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHh----ccCHHHHHHHHHHHHhCCCCCCH
Q 003768 312 NLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEVPMNE 387 (796)
Q Consensus 312 ~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k----~g~~~~A~~lf~~M~~~gi~pd~ 387 (796)
+.+ +...+ ..+-..|.+ .++.++|.+.|++..+.+ +.
T Consensus 142 ~~~---~~~a~---------------------------------~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 182 (273)
T 1ouv_A 142 DLN---DGDGC---------------------------------TILGSLYDAGRGTPKDLKKALASYDKACDLK---DS 182 (273)
T ss_dssp HTT---CHHHH---------------------------------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred hcC---cHHHH---------------------------------HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 875 22222 334445555 889999999999998875 56
Q ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH----cCChHHHHHHHHHHHhCC
Q 003768 388 ASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 388 ~ty~~LI~~~~~----~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~----~G~~~~A~~l~~~M~~~g 452 (796)
..+..+-..|.. .++.++|...|++..+.+- ...+..+-..|.+ .++.++|.+.|+...+.|
T Consensus 183 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 183 PGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 788889999999 9999999999999888743 5566667777888 899999999999988766
No 51
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.33 E-value=3.4e-06 Score=88.24 Aligned_cols=274 Identities=11% Similarity=-0.036 Sum_probs=185.4
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIKLG-QYHYNV 231 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd--~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~----Gi~pd-~~tyn~ 231 (796)
.....++.++|...|++..... ++ .|. ...|..+-..|...|++++|++.|++.... +-.|. ...+..
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVG--TE---DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CS---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC--cc---cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 4567789999999999987652 11 111 357888889999999999999999987632 22222 445666
Q ss_pred HHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC--CcchhhhcccCccccccccccCC----------
Q 003768 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR---------- 299 (796)
Q Consensus 232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~---------- 299 (796)
+-..+. ..|++++|...+.-. .++....+-. ...+|..+-.. +...|+
T Consensus 89 l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~ 148 (338)
T 3ro2_A 89 LGNTLK----------VLGNFDEAIVCCQRH----LDISRELNDKVGEARALYNLGNV------YHAKGKSFGCPGPQDT 148 (338)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHH------HHHHHHTSSSSSCC--
T ss_pred HHHHHH----------HccCHHHHHHHHHHH----HHHHHHhcCchHHHHHHHHHHHH------HHHcCcccccchhhhh
Confidence 666666 789999999988511 1111110111 12246666666 777777
Q ss_pred ----------hHHHHHHHHHHHHcCCC-CCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCH
Q 003768 300 ----------FDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAF 368 (796)
Q Consensus 300 ----------~~~A~~lf~eM~~~Gi~-Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~ 368 (796)
+++|...+++....--. ++. ... ...+ ..+-..|...|++
T Consensus 149 ~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~-------~~~-----------~~~~-----------~~l~~~~~~~~~~ 199 (338)
T 3ro2_A 149 GEFPEDVRNALQAAVDLYEENLSLVTALGDR-------AAQ-----------GRAF-----------GNLGNTHYLLGNF 199 (338)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHTCH-------HHH-----------HHHH-----------HHHHHHHHHHTCH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhcCCH-------HHH-----------HHHH-----------HHHHHHHHHhCCH
Confidence 78887777665432000 000 000 0112 6677788899999
Q ss_pred HHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CcccHHHHHHHHHHcCCh
Q 003768 369 QRGFEIYEKMCLD----EVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSYGPALSVFCNNGDV 438 (796)
Q Consensus 369 ~~A~~lf~~M~~~----gi~-pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~P-d~~ty~~LI~~~~~~G~~ 438 (796)
++|.+.|++.... +.. ....++..+...+...|++++|...+++.... +-.+ ...++..+-..|...|+.
T Consensus 200 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 279 (338)
T 3ro2_A 200 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 279 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCH
Confidence 9999999887642 111 11347888999999999999999999987643 1111 145677788889999999
Q ss_pred HHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 439 DKACSVEEHMLEH----GVY-PEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 439 ~~A~~l~~~M~~~----gv~-pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
++|.+.++...+. +-. ....++..|-..|.+.|+.++|...+++....
T Consensus 280 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999887653 111 11447778888999999999999999988765
No 52
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.28 E-value=5.1e-05 Score=80.40 Aligned_cols=219 Identities=10% Similarity=-0.042 Sum_probs=161.8
Q ss_pred chHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHcCCCC-CHHHHHH
Q 003768 167 SGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCS-------KRGDV-------MGAIRLYDKAQREGIKL-GQYHYNV 231 (796)
Q Consensus 167 ~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~-------k~G~~-------~~A~~lf~~M~~~Gi~p-d~~tyn~ 231 (796)
..|..+|+...... .-+...|..+...+. +.|++ ++|..+|++.... +.| +...|..
T Consensus 33 ~~a~~~~~~al~~~-------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~ 104 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFA 104 (308)
T ss_dssp HHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHH
Confidence 46778888875431 123467777777765 45886 8999999999873 234 5568888
Q ss_pred HHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcc-hhhhcccCccccccccccCChHHHHHHHHHH
Q 003768 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG-QLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (796)
Q Consensus 232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~-tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (796)
+...+. +.|++++|..+|. ..... .-.+.. .|..+... +.+.|++++|..+|++.
T Consensus 105 ~~~~~~----------~~~~~~~A~~~~~-------~al~~-~p~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 105 YADYEE----------SRMKYEKVHSIYN-------RLLAI-EDIDPTLVYIQYMKF------ARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHH----------HTTCHHHHHHHHH-------HHHTS-SSSCTHHHHHHHHHH------HHHHHCHHHHHHHHHHH
T ss_pred HHHHHH----------hcCCHHHHHHHHH-------HHHhc-cccCccHHHHHHHHH------HHHhcCHHHHHHHHHHH
Confidence 888888 7899999999995 33332 111332 68888888 88999999999999988
Q ss_pred HHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHH-HHhccCHHHHHHHHHHHHhCCCCCCHHH
Q 003768 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSE-DAKKYAFQRGFEIYEKMCLDEVPMNEAS 389 (796)
Q Consensus 311 ~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~-~~k~g~~~~A~~lf~~M~~~gi~pd~~t 389 (796)
.+.. |+.... | ...... +...|+.++|.++|+...+.. +-+...
T Consensus 161 ~~~~--p~~~~~---------------------~-----------~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 205 (308)
T 2ond_A 161 REDA--RTRHHV---------------------Y-----------VTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEY 205 (308)
T ss_dssp HTST--TCCTHH---------------------H-----------HHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HhcC--CCCHHH---------------------H-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHH
Confidence 7753 322111 1 111111 223699999999999887652 336789
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC--cccHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003768 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~g-i~Pd--~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
|..++..+.+.|+.++|..+|++..... +.|+ ...|..++..+.+.|+.+.|..+++.+.+..
T Consensus 206 ~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 206 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999999998873 5553 5678888999999999999999999988753
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.26 E-value=6.7e-06 Score=89.20 Aligned_cols=266 Identities=12% Similarity=0.041 Sum_probs=184.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhc
Q 003768 188 RSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVST 263 (796)
Q Consensus 188 ~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd----~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~ 263 (796)
.+....+..+=..+.+.|++++|+.+|+++.+.+- .+ ...|..+-..+. ..|++++|...+.-.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a- 73 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYF----------YLHDYAKALEYHHHD- 73 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHH----------HhcCHHHHHHHHHHH-
Confidence 34456667777888999999999999999997632 23 245666666666 789999999988411
Q ss_pred cCchhhhccCCCC--CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCC-CCC----cceec--------cch--
Q 003768 264 MNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ-FSN----GHMKL--------NSQ-- 326 (796)
Q Consensus 264 ~~s~em~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi-~Pd----~~ty~--------~g~-- 326 (796)
.++....+-. ....|..+-.. +...|++++|...+++..+..- .++ ..++. .|+
T Consensus 74 ---l~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 144 (406)
T 3sf4_A 74 ---LTLARTIGDQLGEAKASGNLGNT------LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSF 144 (406)
T ss_dssp ---HHHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ---HHHHHhccccHHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcc
Confidence 1111111111 23446666667 8899999999999887765310 011 11121 677
Q ss_pred ------------------hhhHHhhhhcC------CCC----cccccccccccccchhhHHHHHHhccCHHHHHHHHHHH
Q 003768 327 ------------------LLDGRSNLERG------PDD----QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM 378 (796)
Q Consensus 327 ------------------~~~A~~l~~~m------~pd----~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M 378 (796)
..+|...+.+. .++ ..+| ..+-..|...|++++|.+.|++.
T Consensus 145 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----------~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 145 GCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAF-----------GNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp C-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-----------HHHHHHHHHHTBHHHHHHHHHHH
T ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH-----------HHHHHHHHHccCHHHHHHHHHHH
Confidence 77787777664 111 1233 66777888999999999999887
Q ss_pred HhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-cccHHHHHHHHHHcCChHHHHHHHHHH
Q 003768 379 CLDE-VPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR-LRSYGPALSVFCNNGDVDKACSVEEHM 448 (796)
Q Consensus 379 ~~~g-i~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M 448 (796)
.... -.++ ..+|..+...|...|++++|...+++.... +-.+. ..+|..+-..|...|+.++|.+.+++.
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 6421 0122 348889999999999999999999987643 11111 457778888999999999999999887
Q ss_pred HhCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 449 LEHGV-YPE----EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 449 ~~~gv-~pd----~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
.+..- ..+ ...+..+-..|...|++++|...+++..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65311 112 55778888889999999999999988654
No 54
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.24 E-value=9.4e-05 Score=84.64 Aligned_cols=313 Identities=9% Similarity=-0.043 Sum_probs=188.0
Q ss_pred hhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccc
Q 003768 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (796)
Q Consensus 161 ~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~ 240 (796)
.+.++.++|..+|+.+... .+-+...|...+..+.+.|++++|..+|+++.... |+...|..++.....
T Consensus 23 ~~~~~~~~a~~~~e~al~~-------~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~-- 91 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQ-------FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRE-- 91 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTT-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHH--
T ss_pred HHhCCHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHH--
Confidence 4568899999999999542 12244789999999999999999999999998653 787777776653321
Q ss_pred cCCcccCCCCChhhHHH----HHhhhccCchhhhccCCCC--CcchhhhcccC---ccccccccccCChHHHHHHHHHHH
Q 003768 241 VGVVKPAKSGSGMRTLD----TFEVSTMNSTELGDSRDMD--NNGQLDYGSSP---MIDKLESNSSYRFDDLDSTFNEKE 311 (796)
Q Consensus 241 ~~~~~~~k~G~~~~A~~----vf~~~~~~s~em~~~~gv~--d~~tyn~LI~~---~~~~~~~~~~g~~~~A~~lf~eM~ 311 (796)
..|+.+.|.+ +|. ......|.. +...|...+.- ......+.+.|+++.|..+|++..
T Consensus 92 -------~~~~~~~a~~~~~~~~~-------~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 92 -------TKGKLPSYKEKMAQAYD-------FALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp -------HTTTSTTHHHHHHHHHH-------HHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred -------HccchhhHHHHHHHHHH-------HHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 2355555554 552 222221322 22335444433 000000223577788888887776
Q ss_pred HcCCCCCc---ceec---------------------cchhhhHHhhhhc--------------CCCCc--------cccc
Q 003768 312 NLGQFSNG---HMKL---------------------NSQLLDGRSNLER--------------GPDDQ--------SRKK 345 (796)
Q Consensus 312 ~~Gi~Pd~---~ty~---------------------~g~~~~A~~l~~~--------------m~pd~--------~ty~ 345 (796)
.. |+. ..|. .++..+|..++.+ +.|+. ..|.
T Consensus 158 ~~---P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~ 234 (530)
T 2ooe_A 158 VN---PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK 234 (530)
T ss_dssp TS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHH
T ss_pred hc---hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence 62 321 1111 1122233322221 01110 0111
Q ss_pred cc---ccc----------------------------cccchhhHHHHHHh-------ccCHH-------HHHHHHHHHHh
Q 003768 346 DW---SID----------------------------NQDADEIRLSEDAK-------KYAFQ-------RGFEIYEKMCL 380 (796)
Q Consensus 346 ~~---~~~----------------------------~~~~~n~lI~~~~k-------~g~~~-------~A~~lf~~M~~ 380 (796)
.| ... ....+..+...+.+ .|+++ +|.++|++...
T Consensus 235 ~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 00 000 00000222233333 57766 89999998876
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc--ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-H
Q 003768 381 DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL--RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-E 457 (796)
Q Consensus 381 ~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~--~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd-~ 457 (796)
.-.+-+...|..++..+.+.|++++|..+|+...+. .|+. ..|..+...+.+.|+.++|.++|+...+.. |+ .
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~ 390 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRH 390 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCT
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCch
Confidence 323446889999999999999999999999999874 5653 478888888899999999999999988753 32 2
Q ss_pred HHHHHHHHH-HHhcCChhHHHHHHHHHHhCCCCC-ChhHHHH-HHHHHhchHH
Q 003768 458 PELEALLRV-SVEAGKGDRVYYLLHKLRTSVRKV-SPSTADV-IAKWFNSKEA 507 (796)
Q Consensus 458 ~ty~~LI~~-~~~~G~~~~A~~ll~~M~~~~~~~-~p~t~~~-I~~~~~~~~~ 507 (796)
..|-..... +...|+.++|..+|++..+. .| .+..+.. +.-..+.|..
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~ 441 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNED 441 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCH
Confidence 333222212 33689999999999988775 33 3445544 3333333433
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.24 E-value=5.2e-05 Score=83.61 Aligned_cols=231 Identities=8% Similarity=-0.044 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCC-hhhHHHHHhhhccCchhhh
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGS-GMRTLDTFEVSTMNSTELG 270 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~-~~~A~~vf~~~~~~s~em~ 270 (796)
..|+.+-..+.+.|++++|++.|++..... +-+...|+.+-.++. ..|+ +++|+..|. +..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~----------~~g~d~~eAl~~~~-------~al 159 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLK----------SLQKDLHEEMNYIT-------AII 159 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCCHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHH----------HcccCHHHHHHHHH-------HHH
Confidence 456666677888999999999999999753 224677777777777 6786 999999995 333
Q ss_pred ccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccc
Q 003768 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (796)
Q Consensus 271 ~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~ 350 (796)
.. .-.+...|+.+-.. +...|++++|...|++..+.. |+-. ..|
T Consensus 160 ~l-~P~~~~a~~~~g~~------~~~~g~~~eAl~~~~kal~ld--P~~~---------------------~a~------ 203 (382)
T 2h6f_A 160 EE-QPKNYQVWHHRRVL------VEWLRDPSQELEFIADILNQD--AKNY---------------------HAW------ 203 (382)
T ss_dssp HH-CTTCHHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHC--TTCH---------------------HHH------
T ss_pred HH-CCCCHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhC--ccCH---------------------HHH------
Confidence 32 22255668888777 889999999999999988753 3221 112
Q ss_pred cccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHH-----HHHHHHHHHCCCCCC-cc
Q 003768 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS-MGDGDMA-----FDMVKRMKSLGINPR-LR 423 (796)
Q Consensus 351 ~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~-~g~~~~A-----~~l~~~M~~~gi~Pd-~~ 423 (796)
.-+-..+.+.|++++|++.|+++.+.. +-+...|+.+-.++.+ .|..++| +..|++.... .|+ ..
T Consensus 204 -----~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~ 275 (382)
T 2h6f_A 204 -----QHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNES 275 (382)
T ss_dssp -----HHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHH
T ss_pred -----HHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHH
Confidence 556677788899999999999999864 3478899999999999 6666888 4777776654 354 45
Q ss_pred cHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------ChhHHHHHHHHH-HhC
Q 003768 424 SYGPALSVFCNNG--DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG---------KGDRVYYLLHKL-RTS 486 (796)
Q Consensus 424 ty~~LI~~~~~~G--~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G---------~~~~A~~ll~~M-~~~ 486 (796)
.|+.+-..+.+.| +.++|.+.+.++ + .-..+...+..|.+.|.+.| ..++|..+++++ .+.
T Consensus 276 a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 276 AWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 6777777788878 689999999888 3 23346778889999998874 358999999998 443
No 56
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.22 E-value=1.3e-05 Score=81.94 Aligned_cols=131 Identities=8% Similarity=-0.118 Sum_probs=86.5
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCC
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLD------EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-------GINPR 421 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~------gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-------gi~Pd 421 (796)
..+-..|...|++++|.+.|++.... +-.| ...++..+...|...|++++|..++++..+. ...+.
T Consensus 131 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 210 (283)
T 3edt_B 131 NNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGD 210 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchh
Confidence 66777888899999999999888764 1123 3568899999999999999999999988753 23455
Q ss_pred cccHHHHHHHHHHcCChHHHHHHHHHHHh----CC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 422 LRSYGPALSVFCNNGDVDKACSVEEHMLE----HG-V-YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 422 ~~ty~~LI~~~~~~G~~~~A~~l~~~M~~----~g-v-~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
...+...+..+...+....+...+..+.. .+ . ......+..|-..|...|++++|..+|++..+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 211 NKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55554444444444332222222222221 11 1 123456788899999999999999999987653
No 57
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.22 E-value=1.5e-05 Score=82.81 Aligned_cols=239 Identities=11% Similarity=-0.007 Sum_probs=148.8
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKS-KKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE------GI-KLGQYHYN 230 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~-~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~------Gi-~pd~~tyn 230 (796)
.....++.++|..+|++......... .........+..+-..|...|++++|+.+|+++... +- .....+|.
T Consensus 36 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 115 (311)
T 3nf1_A 36 QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLN 115 (311)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 45567889999999998765210000 001122367888889999999999999999998854 22 23356677
Q ss_pred HHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhcc------CCCC-CcchhhhcccCccccccccccCChHHH
Q 003768 231 VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS------RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDL 303 (796)
Q Consensus 231 ~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~------~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A 303 (796)
.+-..+. ..|++++|...|. +.... ..-+ ....|..+-.. +...|++++|
T Consensus 116 ~l~~~~~----------~~g~~~~A~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~la~~------~~~~~~~~~A 172 (311)
T 3nf1_A 116 NLAVLYG----------KRGKYKEAEPLCK-------RALEIREKVLGKDHPDVAKQLNNLALL------CQNQGKYEEV 172 (311)
T ss_dssp HHHHHHH----------TTTCHHHHHHHHH-------HHHHHHHHHHCTTCHHHHHHHHHHHHH------HHTTTCHHHH
T ss_pred HHHHHHH----------HcCcHHHHHHHHH-------HHHHHHHHhcCCCChHHHHHHHHHHHH------HHHcCCHHHH
Confidence 7777777 8899999999995 22221 0111 34457777777 8999999999
Q ss_pred HHHHHHHHHcC---CCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHh
Q 003768 304 DSTFNEKENLG---QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL 380 (796)
Q Consensus 304 ~~lf~eM~~~G---i~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~ 380 (796)
..+|++....- ..++... .......+...|.+.|++++|.+.|+++..
T Consensus 173 ~~~~~~a~~~~~~~~~~~~~~-----------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 173 EYYYQRALEIYQTKLGPDDPN-----------------------------VAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHTSCTTCHH-----------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHH-----------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99998876531 0011100 012345567788899999999999999885
Q ss_pred C-------CCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHH
Q 003768 381 D-------EVPMN-------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEE 446 (796)
Q Consensus 381 ~-------gi~pd-------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~ 446 (796)
. ...+. ...+..+...+...+.+.+|...++..... -..+..+|..+-..|.+.|+.++|.++|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 302 (311)
T 3nf1_A 224 RAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEE 302 (311)
T ss_dssp HHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2 11121 222333344444555666666666665433 12345678888899999999999999998
Q ss_pred HHHh
Q 003768 447 HMLE 450 (796)
Q Consensus 447 ~M~~ 450 (796)
+..+
T Consensus 303 ~al~ 306 (311)
T 3nf1_A 303 AAMR 306 (311)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.20 E-value=5.4e-06 Score=90.74 Aligned_cols=274 Identities=10% Similarity=-0.068 Sum_probs=186.5
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIK-LGQYHYNV 231 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd--~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~----Gi~-pd~~tyn~ 231 (796)
.....++.++|...|++...... + .|. ...|..+-..|...|++++|+..|++.... +-. .....+..
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~~--~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAGT--E---DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC--S---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcc--c---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 45577899999999999876521 1 111 147888889999999999999999998743 211 22345555
Q ss_pred HHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC--CcchhhhcccCccccccccccCC----------
Q 003768 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR---------- 299 (796)
Q Consensus 232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~---------- 299 (796)
+-..|. ..|++++|...+.-. .++....+-. ....|..+-.. |...|+
T Consensus 132 l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~~~~~~~~ 191 (411)
T 4a1s_A 132 LGNTLK----------VMGRFDEAAICCERH----LTLARQLGDRLSEGRALYNLGNV------YHAKGKHLGQRNPGKF 191 (411)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHHTCHHHHHHHHHHHHHH------HHHHHHHHHHHSTTCC
T ss_pred HHHHHH----------HCCCHHHHHHHHHHH----HHHHHHhhchHHHHHHHHHHHHH------HHHcCcccccccchhh
Confidence 666666 789999999988411 0111110101 23346666666 888888
Q ss_pred -------hHHHHHHHHHHHHcCCC-CCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHH
Q 003768 300 -------FDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRG 371 (796)
Q Consensus 300 -------~~~A~~lf~eM~~~Gi~-Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A 371 (796)
+++|...+++..+..-. ++. ... ...| ..+-..|...|++++|
T Consensus 192 ~~~a~~~~~~A~~~~~~al~~~~~~~~~-------~~~-----------~~~~-----------~~la~~~~~~g~~~~A 242 (411)
T 4a1s_A 192 GDDVKEALTRAVEFYQENLKLMRDLGDR-------GAQ-----------GRAC-----------GNLGNTYYLLGDFQAA 242 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCH-------HHH-----------HHHH-----------HHHHHHHHHTTCHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHcCCH-------HHH-----------HHHH-----------HHHHHHHHHcCChHHH
Confidence 88888777665432000 000 000 0112 6677788999999999
Q ss_pred HHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----C-CCcccHHHHHHHHHHcCChHHH
Q 003768 372 FEIYEKMCLDEV-PMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI----N-PRLRSYGPALSVFCNNGDVDKA 441 (796)
Q Consensus 372 ~~lf~~M~~~gi-~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi----~-Pd~~ty~~LI~~~~~~G~~~~A 441 (796)
.+.|++.....- .++ ..++..+...|...|++++|...+++.....- . ....+|..+-..|...|+.++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (411)
T 4a1s_A 243 IEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTA 322 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999988765310 112 33788999999999999999999988765311 0 1146777788899999999999
Q ss_pred HHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 442 CSVEEHMLEH----GVY-PEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 442 ~~l~~~M~~~----gv~-pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+.+++..+. +-. .....|..|-..|.+.|+.++|...|++..+.
T Consensus 323 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 323 IEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 9999987653 111 12347788888999999999999999988765
No 59
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.15 E-value=5.6e-05 Score=71.66 Aligned_cols=163 Identities=12% Similarity=-0.012 Sum_probs=127.9
Q ss_pred HHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHH
Q 003768 228 HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTF 307 (796)
Q Consensus 228 tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf 307 (796)
.|..+-..+. ..|+.++|...+. ++... .-.+...|..+... +...|++++|...+
T Consensus 10 ~~~~~~~~~~----------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~A~~~~ 65 (186)
T 3as5_A 10 YYRDKGISHA----------KAGRYSQAVMLLE-------QVYDA-DAFDVDVALHLGIA------YVKTGAVDRGTELL 65 (186)
T ss_dssp HHHHHHHHHH----------HHTCHHHHHHHHT-------TTCCT-TSCCHHHHHHHHHH------HHHTTCHHHHHHHH
T ss_pred HHHHHHHHHH----------HhcCHHHHHHHHH-------HHHHh-CccChHHHHHHHHH------HHHcCCHHHHHHHH
Confidence 4445555555 6799999999994 33322 11255667777778 89999999999999
Q ss_pred HHHHHcCCCCC-cceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCC
Q 003768 308 NEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN 386 (796)
Q Consensus 308 ~eM~~~Gi~Pd-~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd 386 (796)
++..... |+ ...+ ..+...+...|++++|.+.|+++.... +.+
T Consensus 66 ~~~~~~~--~~~~~~~---------------------------------~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 109 (186)
T 3as5_A 66 ERSLADA--PDNVKVA---------------------------------TVLGLTYVQVQKYDLAVPLLIKVAEAN-PIN 109 (186)
T ss_dssp HHHHHHC--TTCHHHH---------------------------------HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHhcC--CCCHHHH---------------------------------HHHHHHHHHhcCHHHHHHHHHHHHhcC-cHh
Confidence 9987763 22 2222 667778899999999999999988763 457
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
...+..+...+...|++++|...+++..+.. ..+...|..+...+...|+.++|.+.++...+.
T Consensus 110 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 110 FNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 8889999999999999999999999988763 335678888999999999999999999988653
No 60
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.12 E-value=0.00012 Score=90.55 Aligned_cols=242 Identities=10% Similarity=0.108 Sum_probs=163.3
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.....+..++|..+|+.-. .++ ...+.+|. ..|++++|.+++++.. +..+|..+=.++-
T Consensus 1058 Iai~lglyEEAf~IYkKa~----------~~~-~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql- 1116 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD----------VNT-SAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQL- 1116 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC----------CHH-HHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHH-
Confidence 3445677888888888861 111 33445544 6677888888887552 3567777777777
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd 318 (796)
+.|++++|.+.|. .-.|.-.|.-++.. +.+.|++++|.+.|..-.+.. ++
T Consensus 1117 ---------~~G~~kEAIdsYi-------------KAdD~say~eVa~~------~~~lGkyEEAIeyL~mArk~~--~e 1166 (1630)
T 1xi4_A 1117 ---------QKGMVKEAIDSYI-------------KADDPSSYMEVVQA------ANTSGNWEELVKYLQMARKKA--RE 1166 (1630)
T ss_pred ---------hCCCHHHHHHHHH-------------hcCChHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhc--cc
Confidence 7899999999984 11255557778888 999999999999887655443 33
Q ss_pred c-------ceec-cchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH
Q 003768 319 G-------HMKL-NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (796)
Q Consensus 319 ~-------~ty~-~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty 390 (796)
. ..|. .+++++...++. .++...| ..+=+.|...|++++|..+|... ..|
T Consensus 1167 ~~Idt~LafaYAKl~rleele~fI~--~~n~ad~-----------~~iGd~le~eg~YeeA~~~Y~kA---------~ny 1224 (1630)
T 1xi4_A 1167 SYVETELIFALAKTNRLAELEEFIN--GPNNAHI-----------QQVGDRCYDEKMYDAAKLLYNNV---------SNF 1224 (1630)
T ss_pred ccccHHHHHHHHhhcCHHHHHHHHh--CCCHHHH-----------HHHHHHHHhcCCHHHHHHHHHhh---------hHH
Confidence 2 2221 233333222211 2333333 44556667777888888888773 378
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003768 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (796)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~ 470 (796)
..+...|++.|++++|.+.+++- -+..+|.-+-.+|...|++..|...... +.-+...+..++..|.+.
T Consensus 1225 ~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~ 1293 (1630)
T 1xi4_A 1225 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDR 1293 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHc
Confidence 88888888888888888888654 3557777777777777887777776554 334667778999999999
Q ss_pred CChhHHHHHHHHHH
Q 003768 471 GKGDRVYYLLHKLR 484 (796)
Q Consensus 471 G~~~~A~~ll~~M~ 484 (796)
|.+++|..+++.-.
T Consensus 1294 G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1294 GYFEELITMLEAAL 1307 (1630)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999986554
No 61
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.11 E-value=0.00063 Score=76.90 Aligned_cols=113 Identities=12% Similarity=0.078 Sum_probs=69.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC---
Q 003768 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM-----GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG--- 436 (796)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~-----g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G--- 436 (796)
.++.++|.+.|++..+.| +...+..|-..|... ++.++|...|++..+.| +...+..|-..|...|
T Consensus 272 ~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~ 345 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEE 345 (490)
T ss_dssp SCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHH
T ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcc
Confidence 566777777777666554 445556666666665 67777777776666654 2234444444454444
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhC
Q 003768 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~----~G~~~~A~~ll~~M~~~ 486 (796)
+.++|.+.|+...+.| +...+..|-..|.. .++.++|...|++..+.
T Consensus 346 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 346 EHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 5666777776666653 45566666666665 56667777777666665
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.09 E-value=1.8e-05 Score=86.52 Aligned_cols=245 Identities=13% Similarity=0.051 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCch
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ----YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~----~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~ 267 (796)
..+..+-..+.+.|++++|+.+|+++.+.+-. +. ..|..+-..+. ..|++++|...+.-. .
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~----------~~g~~~~A~~~~~~a----l 113 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYF----------YLGDYNKAMQYHKHD----L 113 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHH----------HHTCHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHH----------HCCCHHHHHHHHHHH----H
Confidence 34445556788999999999999999986322 33 35666666666 779999999988511 1
Q ss_pred hhhccCCCC--CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCC-CCcceeccchhhhHHhhhhcCCCCcccc
Q 003768 268 ELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQSRK 344 (796)
Q Consensus 268 em~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~-Pd~~ty~~g~~~~A~~l~~~m~pd~~ty 344 (796)
++....+-. ....|..+-.. |...|++++|...|++.....-. .+ ....+ ..|
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~-----------~~~ 169 (411)
T 4a1s_A 114 TLAKSMNDRLGEAKSSGNLGNT------LKVMGRFDEAAICCERHLTLARQLGD-------RLSEG-----------RAL 169 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHHTC-------HHHHH-----------HHH
T ss_pred HHHHHccCchHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHhhc-------hHHHH-----------HHH
Confidence 111111111 33446677677 89999999999999887553100 00 00001 112
Q ss_pred cccccccccchhhHHHHHHhccC-----------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCC
Q 003768 345 KDWSIDNQDADEIRLSEDAKKYA-----------------FQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSMGD 402 (796)
Q Consensus 345 ~~~~~~~~~~~n~lI~~~~k~g~-----------------~~~A~~lf~~M~~~----gi~p-d~~ty~~LI~~~~~~g~ 402 (796)
..+-..|...|+ +++|.+.|++.... +-.+ ...++..+...|...|+
T Consensus 170 -----------~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 238 (411)
T 4a1s_A 170 -----------YNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD 238 (411)
T ss_dssp -----------HHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -----------HHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 566777888888 99999998876531 2111 23588889999999999
Q ss_pred hHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHHcCChHHHHHHHHHHHhCCC----C-CCHHHHHHHHHHHHhcCC
Q 003768 403 GDMAFDMVKRMKSLGIN-PR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV----Y-PEEPELEALLRVSVEAGK 472 (796)
Q Consensus 403 ~~~A~~l~~~M~~~gi~-Pd----~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv----~-pd~~ty~~LI~~~~~~G~ 472 (796)
+++|...+++..+..-. ++ ..+|..+-..|...|+.++|.+.+++..+..- . .....+..+-..|...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (411)
T 4a1s_A 239 FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE 318 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999987653110 11 23777888899999999999999988765311 0 124677888889999999
Q ss_pred hhHHHHHHHHHHhC
Q 003768 473 GDRVYYLLHKLRTS 486 (796)
Q Consensus 473 ~~~A~~ll~~M~~~ 486 (796)
+++|..+|++....
T Consensus 319 ~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 319 FNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987653
No 63
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.08 E-value=0.001 Score=75.06 Aligned_cols=245 Identities=8% Similarity=-0.024 Sum_probs=158.6
Q ss_pred cCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSK----RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 163 ~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k----~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.++..+|.+.|+...+.| +...+..|=..|.. .++.++|+..|+...+.| +...+..|=..|..
T Consensus 92 ~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 159 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFE 159 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 456677888888775543 22555556666666 678888888888888776 45555555555552
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccc----cCChHHHHHHHHHHHHcC
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKENLG 314 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~----~g~~~~A~~lf~eM~~~G 314 (796)
... -.++.++|...|. ...+. + +...+..|-.. |.. .++.++|...|.+-.+.|
T Consensus 160 g~g------~~~d~~~A~~~~~-------~a~~~-~--~~~a~~~Lg~~------y~~g~g~~~~~~~A~~~~~~a~~~~ 217 (490)
T 2xm6_A 160 GDG------VTRDYVMAREWYS-------KAAEQ-G--NVWSCNQLGYM------YSRGLGVERNDAISAQWYRKSATSG 217 (490)
T ss_dssp TSS------SCCCHHHHHHHHH-------HHHHT-T--CHHHHHHHHHH------HHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCC------CCCCHHHHHHHHH-------HHHHC-C--CHHHHHHHHHH------HhcCCCCCcCHHHHHHHHHHHHHCC
Confidence 110 2567888888884 22222 1 33333333333 333 677788888877776654
Q ss_pred CCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHh----ccCHHHHHHHHHHHHhCCCCCCHHHH
Q 003768 315 QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEVPMNEASL 390 (796)
Q Consensus 315 i~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k----~g~~~~A~~lf~~M~~~gi~pd~~ty 390 (796)
. ...+ ..+-..|.. .++.++|.++|++..+.| +...+
T Consensus 218 ~---~~a~---------------------------------~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 218 D---ELGQ---------------------------------LHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp C---HHHH---------------------------------HHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred C---HHHH---------------------------------HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 1 1112 334444443 678888888888887765 45667
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc-----CChHHHHHHHHHHHhCCCCCCHHHHH
Q 003768 391 TAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN-----GDVDKACSVEEHMLEHGVYPEEPELE 461 (796)
Q Consensus 391 ~~LI~~~~~----~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~-----G~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (796)
..|-..|.. .++.++|...|++..+.| +...+..|-..|... ++.++|...|+...+.| +...+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 777777777 788888888888877664 334555555666666 78888888888887765 455666
Q ss_pred HHHHHHHhcC---ChhHHHHHHHHHHhC
Q 003768 462 ALLRVSVEAG---KGDRVYYLLHKLRTS 486 (796)
Q Consensus 462 ~LI~~~~~~G---~~~~A~~ll~~M~~~ 486 (796)
.|-..|...| +.++|..+|++..+.
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 6666666655 677888888887765
No 64
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.06 E-value=3.9e-05 Score=68.37 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=101.3
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+...|++++|..+|+++....- .+...+ ..+...+...|++++|.+
T Consensus 11 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~---------------------------------~~~a~~~~~~~~~~~A~~ 56 (136)
T 2fo7_A 11 YYKQGDYDEAIEYYQKALELDP-RSAEAW---------------------------------YNLGNAYYKQGDYDEAIE 56 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHH---------------------------------HHHHHHHHHHTCHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHcCC-cchhHH---------------------------------HHHHHHHHHhcCHHHHHH
Confidence 7888999999999999877531 122222 667778889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003768 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
+|+++...+ +.+...+..+...+...|++++|..+++++.+.. ..+...+..+...+.+.|+.++|...++++.+..
T Consensus 57 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 57 YYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 999998764 4467789999999999999999999999998763 2356778889999999999999999999987643
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.06 E-value=4.1e-05 Score=79.94 Aligned_cols=244 Identities=11% Similarity=0.033 Sum_probs=166.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchh
Q 003768 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (796)
Q Consensus 193 tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd----~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~e 268 (796)
.+...-..+.+.|++++|+.+|+++.+..- .+ ...|..+-..+. ..|++++|...+.-. .+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a----l~ 71 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYF----------YLHDYAKALEYHHHD----LT 71 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHH----------HcCCHHHHHHHHHHH----HH
Confidence 344455678899999999999999997632 23 356666667777 789999999998411 01
Q ss_pred hhccCCCC--CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCC-CCCcceeccchhhhHHhhhhcCCCCccccc
Q 003768 269 LGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ-FSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345 (796)
Q Consensus 269 m~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi-~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~ 345 (796)
+....+-. ....|..+-.. +...|++++|...+.+..+..- .++.. ..+ .++
T Consensus 72 ~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~-----------~~~- 126 (338)
T 3ro2_A 72 LARTIGDQLGEAKASGNLGNT------LKVLGNFDEAIVCCQRHLDISRELNDKV-------GEA-----------RAL- 126 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCHH-------HHH-----------HHH-
T ss_pred HhhcccccHHHHHHHHHHHHH------HHHccCHHHHHHHHHHHHHHHHHhcCch-------HHH-----------HHH-
Confidence 11110111 23446667667 8899999999999887654310 00100 000 011
Q ss_pred ccccccccchhhHHHHHHhccC--------------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc
Q 003768 346 DWSIDNQDADEIRLSEDAKKYA--------------------FQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSM 400 (796)
Q Consensus 346 ~~~~~~~~~~n~lI~~~~k~g~--------------------~~~A~~lf~~M~~~----gi~p-d~~ty~~LI~~~~~~ 400 (796)
..+-..|...|+ +++|.+.+++.... +-.+ ...++..+...+...
T Consensus 127 ----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (338)
T 3ro2_A 127 ----------YNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLL 196 (338)
T ss_dssp ----------HHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 566677778888 89999988876531 2111 245788899999999
Q ss_pred CChHHHHHHHHHHHHC----CCC-CCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhc
Q 003768 401 GDGDMAFDMVKRMKSL----GIN-PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPE----EPELEALLRVSVEA 470 (796)
Q Consensus 401 g~~~~A~~l~~~M~~~----gi~-Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv-~pd----~~ty~~LI~~~~~~ 470 (796)
|++++|...+++..+. +.. ....++..+...+...|+.++|.+.+++..+..- ..+ ..++..+-..|...
T Consensus 197 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 276 (338)
T 3ro2_A 197 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 276 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Confidence 9999999999987643 111 1123777788889999999999999988764310 112 55778888889999
Q ss_pred CChhHHHHHHHHHHhC
Q 003768 471 GKGDRVYYLLHKLRTS 486 (796)
Q Consensus 471 G~~~~A~~ll~~M~~~ 486 (796)
|++++|...+++....
T Consensus 277 g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 277 QDYEKAIDYHLKHLAI 292 (338)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999887653
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.05 E-value=4.3e-05 Score=86.66 Aligned_cols=212 Identities=4% Similarity=-0.135 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCCh-hhHHHHHhhhccCchhhhccCCCCCcchhhhcc
Q 003768 207 VMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSG-MRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGS 285 (796)
Q Consensus 207 ~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~-~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI 285 (796)
+++|+..+++..... +.+...|..+=.++. ..|++ ++|...|. +.... .-.+...|..+-
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~----------~~g~~~~~A~~~~~-------~al~~-~p~~~~a~~~lg 144 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALN----------VTPDYSPEAEVLLS-------KAVKL-EPELVEAWNQLG 144 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHT----------SSSSCCHHHHHHHH-------HHHHH-CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHH----------hccccHHHHHHHHH-------HHHhh-CCCCHHHHHHHH
Confidence 566777777655332 235667766666666 78999 99999995 33322 112556688888
Q ss_pred cCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhc
Q 003768 286 SPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKK 365 (796)
Q Consensus 286 ~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~ 365 (796)
.. |.+.|++++|...|++..+.. |+...+ ..+-..|...
T Consensus 145 ~~------~~~~g~~~~A~~~~~~al~~~--p~~~~~---------------------------------~~lg~~~~~~ 183 (474)
T 4abn_A 145 EV------YWKKGDVTSAHTCFSGALTHC--KNKVSL---------------------------------QNLSMVLRQL 183 (474)
T ss_dssp HH------HHHHTCHHHHHHHHHHHHTTC--CCHHHH---------------------------------HHHHHHHTTC
T ss_pred HH------HHHcCCHHHHHHHHHHHHhhC--CCHHHH---------------------------------HHHHHHHHHh
Confidence 88 999999999999999888764 554333 5566667777
Q ss_pred ---------cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCC----Cccc
Q 003768 366 ---------YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM--------GDGDMAFDMVKRMKSLGINP----RLRS 424 (796)
Q Consensus 366 ---------g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~--------g~~~~A~~l~~~M~~~gi~P----d~~t 424 (796)
|++++|.+.|++..+.. +-+...|..+..+|... |++++|...|++..+. .| +...
T Consensus 184 ~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 260 (474)
T 4abn_A 184 QTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDL 260 (474)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHH
T ss_pred ccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHH
Confidence 99999999999988754 34688999999999998 9999999999998875 35 6778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003768 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 425 y~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M 483 (796)
|..+-..|...|+.++|.+.|++..+.. | +...+..+-..+...|+.++|...+.++
T Consensus 261 ~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 261 HLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8888899999999999999999988754 4 4556788888888888888887765443
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.02 E-value=0.0002 Score=68.88 Aligned_cols=164 Identities=12% Similarity=0.023 Sum_probs=129.0
Q ss_pred hhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHH
Q 003768 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (796)
Q Consensus 280 tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI 359 (796)
.|..|=.. |.+.|++++|...|++..+.. |+... .| ..+-
T Consensus 7 iy~~lG~~------~~~~g~~~~A~~~~~~al~~~--p~~~~---------------------~~-----------~~la 46 (184)
T 3vtx_A 7 IYMDIGDK------KRTKGDFDGAIRAYKKVLKAD--PNNVE---------------------TL-----------LKLG 46 (184)
T ss_dssp HHHHHHHH------HHHHTCHHHHHHHHHHHHHHC--TTCHH---------------------HH-----------HHHH
T ss_pred HHHHHHHH------HHHcCCHHHHHHHHHHHHHhC--CCCHH---------------------HH-----------HHHH
Confidence 35555455 888999999999999887652 33221 12 6677
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChH
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~ 439 (796)
..|.+.|++++|.+.+....... +-+...+..+...+...++.+.|...+.+..... .-+...+..+-..|.+.|+.+
T Consensus 47 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~ 124 (184)
T 3vtx_A 47 KTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHD 124 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCch
Confidence 78889999999999999887754 3456778888888999999999999999877652 234567777888899999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+|.+.|+...+.. +-+...|..+-..|.+.|+.++|...|++..+.
T Consensus 125 ~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 125 KAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 9999999988754 235678889999999999999999999988765
No 68
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.99 E-value=0.00032 Score=80.18 Aligned_cols=269 Identities=10% Similarity=0.028 Sum_probs=178.9
Q ss_pred CCcchHHHHHHHHHh--cCCCCCCC-CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCC
Q 003768 164 TNDSGQYKVRGITDE--KGSKKSKK-DRSE--------QFQLRVELDMCSKR----GDV----MGAIRLYDKAQREGIKL 224 (796)
Q Consensus 164 ~~~~~A~~vf~~M~~--~g~~~~~g-~~Pd--------~~tyn~lI~a~~k~----G~~----~~A~~lf~~M~~~Gi~p 224 (796)
++...|..++.++.. .++..... +.|+ ...|...|...-.. ++. ..|+.+|++.... .+-
T Consensus 192 ~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~ 270 (530)
T 2ooe_A 192 RDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGH 270 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCC
Confidence 445667777776432 12222111 2333 35677666544332 233 4788899998865 234
Q ss_pred CHHHHHHHHHHHHccccCCcccCCCCChh-------hHHHHHhhhccCchhhhccCCCC-CcchhhhcccCccccccccc
Q 003768 225 GQYHYNVLLYLCSSAAVGVVKPAKSGSGM-------RTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNS 296 (796)
Q Consensus 225 d~~tyn~LL~a~~~~~~~~~~~~k~G~~~-------~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~LI~~~~~~~~~~~ 296 (796)
+...|..+...+..... .-...|+++ +|..+|. ..... -.+ +...|..+... +.+
T Consensus 271 ~~~~w~~~~~~~~~~~~---~~~~~g~~~~a~~~~~~A~~~~~-------~Al~~-~~p~~~~l~~~~~~~------~~~ 333 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSK---LLAEKGDMNNAKLFSDEAANIYE-------RAIST-LLKKNMLLYFAYADY------EES 333 (530)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHTTTCCHHHHHHHHHHHHHHH-------HHTTT-TCSSCHHHHHHHHHH------HHH
T ss_pred CHHHHHHHHHHHHHhch---hhhhccchhhhhhhhHHHHHHHH-------HHHHH-hCcccHHHHHHHHHH------HHh
Confidence 56777777776652100 000157776 8888884 22221 123 45558888888 888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHH
Q 003768 297 SYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYE 376 (796)
Q Consensus 297 ~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~ 376 (796)
.|++++|..+|++..+. .|+..+. .| ..++..+.+.|++++|.++|+
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~--------------------~~-----------~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTL--------------------VY-----------IQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHH--------------------HH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCchH--------------------HH-----------HHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999998874 3442110 12 667777788899999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhCC-C
Q 003768 377 KMCLDEVPMNEASLTAVGRM-AMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-V 453 (796)
Q Consensus 377 ~M~~~gi~pd~~ty~~LI~~-~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g-v 453 (796)
...+.. +.+...|-..... +...|+.++|..+|+...+. .| +...|..++..+.+.|+.++|..+|+.....+ .
T Consensus 381 ~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 381 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 988753 1222333222222 33689999999999987765 24 46788888888999999999999999998864 2
Q ss_pred CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 454 YPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 454 ~pd--~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|+ ...|...+......|+.+.+..++.++.+.
T Consensus 458 ~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 458 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 332 558888888888999999999999998876
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.88 E-value=0.0011 Score=63.55 Aligned_cols=166 Identities=17% Similarity=0.103 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhh
Q 003768 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (796)
Q Consensus 191 ~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~ 270 (796)
...|..+=..|.+.|++++|++.|++..+.. +-+...|..+-.++. +.|+.++|...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~----------~~~~~~~a~~~~----------- 62 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYM----------DIGLPNDAIESL----------- 62 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HCCCHHHHHHHH-----------
Confidence 4678888889999999999999999988653 224555655555555 555666665555
Q ss_pred ccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccc
Q 003768 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (796)
Q Consensus 271 ~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~ 350 (796)
....... |+... .+
T Consensus 63 -------------------------------------~~~~~~~--~~~~~---------------------~~------ 76 (184)
T 3vtx_A 63 -------------------------------------KKFVVLD--TTSAE---------------------AY------ 76 (184)
T ss_dssp -------------------------------------HHHHHHC--CCCHH---------------------HH------
T ss_pred -------------------------------------HHHHhcC--chhHH---------------------HH------
Confidence 3322221 11100 00
Q ss_pred cccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 003768 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (796)
Q Consensus 351 ~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~ 430 (796)
..+-..+...++++.|.+.+.+..... +-+..++..+-..|.+.|++++|.+.|++..+.. +-+...|..+-.
T Consensus 77 -----~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~ 149 (184)
T 3vtx_A 77 -----YILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGL 149 (184)
T ss_dssp -----HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHH
Confidence 334445667778888888888777643 3467788888888888999999999988877652 234567777888
Q ss_pred HHHHcCChHHHHHHHHHHHhC
Q 003768 431 VFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 431 ~~~~~G~~~~A~~l~~~M~~~ 451 (796)
.|.+.|+.++|.+.|++..+.
T Consensus 150 ~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 150 AYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHhC
Confidence 888889999999998888763
No 70
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.88 E-value=0.00043 Score=72.71 Aligned_cols=127 Identities=9% Similarity=-0.031 Sum_probs=86.8
Q ss_pred hhHHHHHHhc-cCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc------
Q 003768 356 EIRLSEDAKK-YAFQRGFEIYEKMCLD----EVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR------ 423 (796)
Q Consensus 356 n~lI~~~~k~-g~~~~A~~lf~~M~~~----gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~------ 423 (796)
+.+-..|... |++++|.+.|++.... +-.+. ..+|+.+...+.+.|++++|...|++..+........
T Consensus 121 ~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 200 (292)
T 1qqe_A 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (292)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 4455667775 9999999999877642 11111 3578899999999999999999999988764332221
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH--hcCChhHHHHHHHHHH
Q 003768 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP------ELEALLRVSV--EAGKGDRVYYLLHKLR 484 (796)
Q Consensus 424 ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~------ty~~LI~~~~--~~G~~~~A~~ll~~M~ 484 (796)
.|..+...+...|+.++|...|++..+. .|+.. .+..|+.+|. ..+++++|...|+.+.
T Consensus 201 ~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 201 YFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 4666777888999999999999987653 24322 3445566664 3456777777775543
No 71
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.88 E-value=0.00054 Score=75.43 Aligned_cols=237 Identities=8% Similarity=-0.038 Sum_probs=172.0
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGD-VMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~-~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~ 237 (796)
.+.+.++.++|+..|+...... | -+...|+.+-..+.+.|+ +++|+..|+++....- -+...|+.+=.++.
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~--P-----~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELN--A-----ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHHHHHHhC--c-----cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
Confidence 4567789999999999986532 1 234788999999999996 9999999999997642 25677777777777
Q ss_pred ccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCC
Q 003768 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (796)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~P 317 (796)
+.|++++|+..|. ..... +-.+...|..+-.. +.+.|++++|...|+++.+.. |
T Consensus 178 ----------~~g~~~eAl~~~~-------kal~l-dP~~~~a~~~lg~~------~~~~g~~~eAl~~~~~al~l~--P 231 (382)
T 2h6f_A 178 ----------WLRDPSQELEFIA-------DILNQ-DAKNYHAWQHRQWV------IQEFKLWDNELQYVDQLLKED--V 231 (382)
T ss_dssp ----------HHTCCTTHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHC--T
T ss_pred ----------HccCHHHHHHHHH-------HHHHh-CccCHHHHHHHHHH------HHHcCChHHHHHHHHHHHHhC--C
Confidence 7789999999995 33332 22266678888777 889999999999999998863 3
Q ss_pred Cc-ceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHh-ccCHHHH-----HHHHHHHHhCCCCCCHHHH
Q 003768 318 NG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK-KYAFQRG-----FEIYEKMCLDEVPMNEASL 390 (796)
Q Consensus 318 d~-~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k-~g~~~~A-----~~lf~~M~~~gi~pd~~ty 390 (796)
+. ..| +.+-..|.+ .|..++| ++.|++..... +-+...|
T Consensus 232 ~~~~a~---------------------------------~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~ 277 (382)
T 2h6f_A 232 RNNSVW---------------------------------NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAW 277 (382)
T ss_dssp TCHHHH---------------------------------HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred CCHHHH---------------------------------HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHH
Confidence 22 122 555555666 5554666 57787777643 3367899
Q ss_pred HHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC---------ChHHHHHHHHHH-HhCCCCCCH-
Q 003768 391 TAVGRMAMSMG--DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG---------DVDKACSVEEHM-LEHGVYPEE- 457 (796)
Q Consensus 391 ~~LI~~~~~~g--~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G---------~~~~A~~l~~~M-~~~gv~pd~- 457 (796)
+.+...+.+.| +.++|++.+.++ +. -..+...+..+...|.+.| ..++|.++++.+ .+. .|..
T Consensus 278 ~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~ 353 (382)
T 2h6f_A 278 NYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRK 353 (382)
T ss_dssp HHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGH
T ss_pred HHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhH
Confidence 99999999988 689999999887 22 2334567778888888874 358999999998 553 3543
Q ss_pred HHHHHHHHHH
Q 003768 458 PELEALLRVS 467 (796)
Q Consensus 458 ~ty~~LI~~~ 467 (796)
.-|.-+...+
T Consensus 354 ~~w~~~~~~l 363 (382)
T 2h6f_A 354 EYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3455554444
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.85 E-value=0.0013 Score=70.83 Aligned_cols=273 Identities=9% Similarity=-0.022 Sum_probs=170.8
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHH----HHHHH
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRS--EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGI-KLGQY----HYNVL 232 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~P--d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi-~pd~~----tyn~L 232 (796)
....++.++|...+++..... +.. .+ -...++.+-..+...|++++|...+++.....- ..+.. +++.+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~--~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEEL--PPG--WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTC--CTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcC--CCC--chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 345688899999999875532 111 11 112566666788899999999999999874211 12222 23334
Q ss_pred HHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC----CcchhhhcccCccccccccccCChHHHHHHHH
Q 003768 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308 (796)
Q Consensus 233 L~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~----d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~ 308 (796)
-..+. ..|++++|...+.-. -+.....+-. ....+..+-.. +...|++++|...++
T Consensus 100 a~~~~----------~~G~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~~~ 159 (373)
T 1hz4_A 100 SEILF----------AQGFLQTAWETQEKA----FQLINEQHLEQLPMHEFLVRIRAQL------LWAWARLDEAEASAR 159 (373)
T ss_dssp HHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCTTSTHHHHHHHHHHHH------HHHTTCHHHHHHHHH
T ss_pred HHHHH----------HCCCHHHHHHHHHHH----HHHHHHhccccCcHHHHHHHHHHHH------HHHhcCHHHHHHHHH
Confidence 44444 679999999988511 1111111111 12335555555 788999999999998
Q ss_pred HHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCC--C
Q 003768 309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM--N 386 (796)
Q Consensus 309 eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~p--d 386 (796)
+.....-....... ...| ..+-..+...|++++|...+++.....-.+ .
T Consensus 160 ~al~~~~~~~~~~~------------------~~~~-----------~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~ 210 (373)
T 1hz4_A 160 SGIEVLSSYQPQQQ------------------LQCL-----------AMLIQCSLARGDLDNARSQLNRLENLLGNGKYH 210 (373)
T ss_dssp HHHHHTTTSCGGGG------------------HHHH-----------HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHhhccCcHHH------------------HHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc
Confidence 87654311100000 0011 556677888999999999999876531111 1
Q ss_pred HHHHH----HHHHHHHhcCChHHHHHHHHHHHHCCCCCC---cccHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC
Q 003768 387 EASLT----AVGRMAMSMGDGDMAFDMVKRMKSLGINPR---LRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP 455 (796)
Q Consensus 387 ~~ty~----~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd---~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~----gv~p 455 (796)
..... .++..+...|+.++|...+++.......+. ...+..+...+...|+.++|.+.++..... |..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~ 290 (373)
T 1hz4_A 211 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMS 290 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchh
Confidence 11111 233457799999999999988654322111 124566778888999999999999887542 3222
Q ss_pred CHH-HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 456 EEP-ELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 456 d~~-ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
+.. .+..+-.++...|+.++|...|.+...
T Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 291 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 332 556666778889999999999887654
No 73
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.82 E-value=3.5e-05 Score=83.44 Aligned_cols=279 Identities=13% Similarity=0.006 Sum_probs=184.5
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIKLG-QYHYNV 231 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd--~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~----Gi~pd-~~tyn~ 231 (796)
.....++.++|...|++...... + .|. ...|..+-..|...|++++|+..|+++... +-.|. ..+|..
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~--~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVGT--E---DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC--S---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCc--c---cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 45677899999999999876521 1 111 257888889999999999999999987632 22222 345555
Q ss_pred HHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC--CcchhhhcccCccccccccccCC----------
Q 003768 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR---------- 299 (796)
Q Consensus 232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~---------- 299 (796)
+-..+. ..|++++|...+.-. .++....+-. ...+|..+-.. +...|+
T Consensus 93 la~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~~~~~~~~ 152 (406)
T 3sf4_A 93 LGNTLK----------VLGNFDEAIVCCQRH----LDISRELNDKVGEARALYNLGNV------YHAKGKSFGCPGPQDV 152 (406)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHHTCHHHHHHHHHHHHHH------HHHHHHTCC-------
T ss_pred HHHHHH----------HcCCHHHHHHHHHHH----HHHHHhcccccchHHHHHHHHHH------HHHcCCcccccccchh
Confidence 666666 779999999988411 0111110100 12346666666 888888
Q ss_pred ----------hHHHHHHHHHHHHc----CCCCCc-ceec--------cchhhhHHhhhhcC------CCC----cccccc
Q 003768 300 ----------FDDLDSTFNEKENL----GQFSNG-HMKL--------NSQLLDGRSNLERG------PDD----QSRKKD 346 (796)
Q Consensus 300 ----------~~~A~~lf~eM~~~----Gi~Pd~-~ty~--------~g~~~~A~~l~~~m------~pd----~~ty~~ 346 (796)
+++|...+.+.... +-.|.. ..+. .|+..+|...+.+. .++ ..+|
T Consensus 153 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-- 230 (406)
T 3sf4_A 153 GEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY-- 230 (406)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHH--
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHH--
Confidence 99998888776442 211111 1121 77888888887775 122 1134
Q ss_pred cccccccchhhHHHHHHhccCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----C
Q 003768 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----G 417 (796)
Q Consensus 347 ~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~----gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g 417 (796)
..+-..|...|++++|.+.|++.... +-.+. ..++..+...|...|++++|...+++..+. +
T Consensus 231 ---------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 231 ---------SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp ---------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ---------HHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 67778899999999999999887642 21111 568889999999999999999999987643 1
Q ss_pred CCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCh
Q 003768 418 INP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP-EEPELEALLRVSVEAGKG 473 (796)
Q Consensus 418 i~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~----gv~p-d~~ty~~LI~~~~~~G~~ 473 (796)
-.+ ...+|..+-..|...|+.++|.+.+++..+. +-.+ ...++..|-..+...|+.
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 111 1456777888889999999999999886542 2111 233455555555555554
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.81 E-value=0.00023 Score=77.40 Aligned_cols=235 Identities=10% Similarity=0.053 Sum_probs=157.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccC
Q 003768 199 DMCSKRGDVMGAIRLYDKAQREG-IKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR 273 (796)
Q Consensus 199 ~a~~k~G~~~~A~~lf~~M~~~G-i~pd----~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~ 273 (796)
..+...|++++|+..|++..+.- -.+| ..+|..+=..+. ..|+.++|...+.-. .++....
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~----------~~~~~~~A~~~~~~a----l~~~~~~ 176 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY----------YMKQTYFSMDYARQA----YEIYKEH 176 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH----HHHHHTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH----------HcCCHHHHHHHHHHH----HHHHHhC
Confidence 45678899999999999998531 1133 345555555666 778999888888410 1111111
Q ss_pred CC-C--CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCC-CCcceeccchhhhHHhhhhcCCCCccccccccc
Q 003768 274 DM-D--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (796)
Q Consensus 274 gv-~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~-Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~ 349 (796)
+- . ...+++.+-.. |...|++++|...|++..+..-. ++.. ..+ .+|
T Consensus 177 ~~~~~~~~~~~~~lg~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~-----------~~~----- 227 (383)
T 3ulq_A 177 EAYNIRLLQCHSLFATN------FLDLKQYEDAISHFQKAYSMAEAEKQPQ-------LMG-----------RTL----- 227 (383)
T ss_dssp STTHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCHH-------HHH-----------HHH-----
T ss_pred ccchHHHHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHHHHHcCChH-------HHH-----------HHH-----
Confidence 11 1 12346666666 88999999999998876543100 0100 000 112
Q ss_pred ccccchhhHHHHHHhccCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC
Q 003768 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP 420 (796)
Q Consensus 350 ~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~----gi-~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~P 420 (796)
+.+-..|...|++++|.+.|++.... +. +....++..+...|.+.|+.++|...+++..+. +-..
T Consensus 228 ------~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 301 (383)
T 3ulq_A 228 ------YNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVI 301 (383)
T ss_dssp ------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ------HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 56777888999999999999988761 33 334678999999999999999999999887643 1111
Q ss_pred CcccHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 421 RLRSYGPALSVFCNNGD---VDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 421 d~~ty~~LI~~~~~~G~---~~~A~~l~~~M~~~gv~pd-~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
....+..+-..+...|+ .++|..+++.. +..|+ ...+..|-..|...|+.++|...+++...
T Consensus 302 ~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 302 YLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22334556667777888 77777777765 33333 34667788889999999999999988754
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.80 E-value=0.0009 Score=72.12 Aligned_cols=236 Identities=15% Similarity=0.004 Sum_probs=154.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCC
Q 003768 199 DMCSKRGDVMGAIRLYDKAQREGIKLGQY----HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD 274 (796)
Q Consensus 199 ~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~----tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~g 274 (796)
..+...|++++|..++++.....-..+.. .++.+-..+. ..|++++|...+.-. .++....+
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~ 87 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH----------CKGELTRSLALMQQT----EQMARQHD 87 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH----------HHTCHHHHHHHHHHH----HHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH----------hcCcHHHHHHHHHHH----HHHHHhcC
Confidence 35567899999999999988654222332 3334444444 568999999988511 11111111
Q ss_pred CC--CcchhhhcccCccccccccccCChHHHHHHHHHHHHc----CCC--CCcceeccchhhhHHhhhhcCCCCcccccc
Q 003768 275 MD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL----GQF--SNGHMKLNSQLLDGRSNLERGPDDQSRKKD 346 (796)
Q Consensus 275 v~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~----Gi~--Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~ 346 (796)
.. -..+++.+-.. +...|++++|...+++.... |-. |... ..+
T Consensus 88 ~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~---------------------~~~-- 138 (373)
T 1hz4_A 88 VWHYALWSLIQQSEI------LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE---------------------FLV-- 138 (373)
T ss_dssp CHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH---------------------HHH--
T ss_pred cHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH---------------------HHH--
Confidence 11 11224444445 78899999999998877653 111 1110 011
Q ss_pred cccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc
Q 003768 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV----PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (796)
Q Consensus 347 ~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi----~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~ 422 (796)
..+-..|...|++++|.+.+++.....- .....+|..+...+...|++++|...+++.....-.++.
T Consensus 139 ---------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~ 209 (373)
T 1hz4_A 139 ---------RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY 209 (373)
T ss_dssp ---------HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC
T ss_pred ---------HHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCc
Confidence 4456678889999999999998765321 113467888999999999999999999988654222221
Q ss_pred -ccHHH-----HHHHHHHcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 423 -RSYGP-----ALSVFCNNGDVDKACSVEEHMLEHGVYP---EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 423 -~ty~~-----LI~~~~~~G~~~~A~~l~~~M~~~gv~p---d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..+.. .+..+...|+.++|...++........+ ....+..+...+...|+.++|..++++....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 210 HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 12222 2334778999999999998876543211 1335677788899999999999999887543
No 76
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.79 E-value=0.0011 Score=73.57 Aligned_cols=293 Identities=9% Similarity=-0.032 Sum_probs=165.3
Q ss_pred hhhcCCcchHHHHHHHHHhc--CCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHH
Q 003768 160 MEQRTNDSGQYKVRGITDEK--GSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-----G-IKL-GQYHYN 230 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~--g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~-----G-i~p-d~~tyn 230 (796)
....|+.++|++.|++-.+- ....+.......++|+.+-..|...|++++|...|++..+. + ..+ ...+|+
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~ 140 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence 34568888898888764321 11111112234578999999999999999999999987632 1 111 234555
Q ss_pred HHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHH
Q 003768 231 VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (796)
Q Consensus 231 ~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (796)
.+-.++... ..+++++|...|. +.... .-.+...+..+... ...+...++.++|.+.+++.
T Consensus 141 ~~g~~~~~~--------~~~~y~~A~~~~~-------kal~~-~p~~~~~~~~~~~~---~~~l~~~~~~~~al~~~~~a 201 (472)
T 4g1t_A 141 EEGWTRLKC--------GGNQNERAKVCFE-------KALEK-KPKNPEFTSGLAIA---SYRLDNWPPSQNAIDPLRQA 201 (472)
T ss_dssp HHHHHHHHH--------CTTHHHHHHHHHH-------HHHHH-STTCHHHHHHHHHH---HHHHHHSCCCCCTHHHHHHH
T ss_pred HHHHHHHHH--------ccccHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH---HHHhcCchHHHHHHHHHHHH
Confidence 443344311 2356889999995 22221 11122223222222 00134556677788777766
Q ss_pred HHcCCCCCcc-eec------------cchhhhHHhhhhcC---C-CCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 311 ENLGQFSNGH-MKL------------NSQLLDGRSNLERG---P-DDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 311 ~~~Gi~Pd~~-ty~------------~g~~~~A~~l~~~m---~-pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
.+.. |+.. .+. .++..+|...+++. . .+...+ ..+-..|.+.|++++|.+
T Consensus 202 l~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~-----------~~lg~~~~~~~~~~~A~~ 268 (472)
T 4g1t_A 202 IRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL-----------RSAAKFYRRKDEPDKAIE 268 (472)
T ss_dssp HHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHH-----------HHHHHHHHHTTCHHHHHH
T ss_pred hhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHH-----------HHHHHHHHHcCchHHHHH
Confidence 5542 3321 111 45556666666654 2 233334 566677778888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh-------------------cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH
Q 003768 374 IYEKMCLDEVPMNEASLTAVGRMAMS-------------------MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~-------------------~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~ 434 (796)
.|++..+.. +-+..++..+-..|.. .+..+.|...++...+.. ..+..+|..+-..|..
T Consensus 269 ~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 269 LLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHH
T ss_pred HHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHH
Confidence 888776643 2244555555444432 123456666666655442 2345667777777888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHhcCChhHHHHHHHHHHhC
Q 003768 435 NGDVDKACSVEEHMLEHGVYPEEP--ELEALLR-VSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~pd~~--ty~~LI~-~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|+.++|.+.|+...+....+... .+..+-. .+...|+.++|...+.+...-
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 888888888888777654322211 1222211 224567788888887776654
No 77
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.76 E-value=0.0032 Score=78.32 Aligned_cols=246 Identities=12% Similarity=-0.011 Sum_probs=178.6
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
.+...++.++|.++.++. ... .+|..+=.++-+.|++++|+..|... -|...|.-++.+|.
T Consensus 1085 Lie~i~nldrAiE~Aerv------n~p------~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~- 1145 (1630)
T 1xi4_A 1085 LIEHIGNLDRAYEFAERC------NEP------AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAAN- 1145 (1630)
T ss_pred HHHHHhhHHHHHHHHHhc------CCH------HHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHH-
Confidence 344677888899988876 112 68889999999999999999999664 36788888999999
Q ss_pred cccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCC
Q 003768 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (796)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd 318 (796)
+.|++++|.+.+. |... -.++....+.+..+ |++.+++++...+.. .|+
T Consensus 1146 ---------~lGkyEEAIeyL~--------mArk-~~~e~~Idt~Lafa------YAKl~rleele~fI~-------~~n 1194 (1630)
T 1xi4_A 1146 ---------TSGNWEELVKYLQ--------MARK-KARESYVETELIFA------LAKTNRLAELEEFIN-------GPN 1194 (1630)
T ss_pred ---------HcCCHHHHHHHHH--------HHHh-hcccccccHHHHHH------HHhhcCHHHHHHHHh-------CCC
Confidence 8899999999994 4332 11233334457777 899998886444431 123
Q ss_pred cceec--------cchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH
Q 003768 319 GHMKL--------NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (796)
Q Consensus 319 ~~ty~--------~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty 390 (796)
...|. .|+.++|..++... ..| ..+...|++.|++++|.+.+++- -+..+|
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA----~ny-----------~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV----SNF-----------GRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh----hHH-----------HHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 32222 88888898888774 355 88999999999999999999875 367899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003768 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (796)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~ 470 (796)
.-+-.+|...|++..|...... +.-+...+..++..|-+.|.+++|..+++.-.... .-....|+-|-..|++.
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC
Confidence 9999999999999998887653 33455567789999999999999999997655432 22344555555666553
Q ss_pred --CChhHHHHHHH
Q 003768 471 --GKGDRVYYLLH 481 (796)
Q Consensus 471 --G~~~~A~~ll~ 481 (796)
+++.++.++|.
T Consensus 1328 ~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1328 KPQKMREHLELFW 1340 (1630)
T ss_pred CHHHHHHHHHHHH
Confidence 34445555544
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.74 E-value=0.00054 Score=77.48 Aligned_cols=164 Identities=8% Similarity=-0.097 Sum_probs=135.7
Q ss_pred CcchhhhcccCccccccccccCCh-HHHHHHHHHHHHcCCCCCc-ceeccchhhhHHhhhhcCCCCcccccccccccccc
Q 003768 277 NNGQLDYGSSPMIDKLESNSSYRF-DDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDA 354 (796)
Q Consensus 277 d~~tyn~LI~~~~~~~~~~~~g~~-~~A~~lf~eM~~~Gi~Pd~-~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~ 354 (796)
+...|..+-.. +...|++ ++|...|++..+.. |+. ..|
T Consensus 101 ~a~~~~~lg~~------~~~~g~~~~~A~~~~~~al~~~--p~~~~a~-------------------------------- 140 (474)
T 4abn_A 101 EAQALMLKGKA------LNVTPDYSPEAEVLLSKAVKLE--PELVEAW-------------------------------- 140 (474)
T ss_dssp CHHHHHHHHHH------HTSSSSCCHHHHHHHHHHHHHC--TTCHHHH--------------------------------
T ss_pred hHHHHHHHHHH------HHhccccHHHHHHHHHHHHhhC--CCCHHHH--------------------------------
Confidence 33445555555 8889999 99999999887753 332 222
Q ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCcccH
Q 003768 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM---------GDGDMAFDMVKRMKSLGINPRLRSY 425 (796)
Q Consensus 355 ~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~---------g~~~~A~~l~~~M~~~gi~Pd~~ty 425 (796)
..+-..|.+.|++++|.+.|++..+.. |+..++..+-..|... |++++|...|++..+.. .-+...|
T Consensus 141 -~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 216 (474)
T 4abn_A 141 -NQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSW 216 (474)
T ss_dssp -HHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHH
Confidence 777888999999999999999998764 7788999999999999 99999999999988763 2346778
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 426 GPALSVFCNN--------GDVDKACSVEEHMLEHGVYP----EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 426 ~~LI~~~~~~--------G~~~~A~~l~~~M~~~gv~p----d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..+-..|... |+.++|.+.|+...+.. | +...|..+-..|...|++++|...|++..+.
T Consensus 217 ~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 217 YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888 99999999999998853 5 7888999999999999999999999998876
No 79
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.69 E-value=9.4e-05 Score=75.34 Aligned_cols=131 Identities=13% Similarity=0.053 Sum_probs=105.1
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhC------CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC-CCC
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLD------EVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL------GI-NPR 421 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~------gi~-pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~------gi-~Pd 421 (796)
..+-..|...|++++|.+.|++.... +-. ....+|..+...|...|++++|...+.+.... .- ...
T Consensus 47 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 126 (283)
T 3edt_B 47 NILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV 126 (283)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 67778889999999999999988753 222 24568899999999999999999999988654 11 223
Q ss_pred cccHHHHHHHHHHcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEH------GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 422 ~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~------gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..+|..+-..|...|+.++|.+++++..+. +-.| ....+..|-..|...|++++|..+|++....
T Consensus 127 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 127 AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 567788888999999999999999988764 1123 3567888899999999999999999988753
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.63 E-value=0.0017 Score=64.68 Aligned_cols=142 Identities=9% Similarity=-0.006 Sum_probs=106.6
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+...|++++|...|++..+..-.++...+ ..+-..+.+.|++++|.+
T Consensus 17 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~A~~ 63 (228)
T 4i17_A 17 ALNAKNYAVAFEKYSEYLKLTNNQDSVTA---------------------------------YNCGVCADNIKKYKEAAD 63 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTCCHHHH---------------------------------HHHHHHHHHTTCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhccCCCCcHHH---------------------------------HHHHHHHHHhhcHHHHHH
Confidence 67789999999999988776532344333 336677888999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc--------ccHHHHHHHHHHcCChHHHHHHH
Q 003768 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL--------RSYGPALSVFCNNGDVDKACSVE 445 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~--------~ty~~LI~~~~~~G~~~~A~~l~ 445 (796)
.|++..... +-+..+|..+...|...|++++|...+++..+. .|+. ..|..+=..+...|+.++|.+.|
T Consensus 64 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 140 (228)
T 4i17_A 64 YFDIAIKKN-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENY 140 (228)
T ss_dssp HHHHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhC-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHH
Confidence 999888754 235678888999999999999999999988765 3443 34555666777889999999999
Q ss_pred HHHHhCCCCCC---HHHHHHHHHHHHhcCCh
Q 003768 446 EHMLEHGVYPE---EPELEALLRVSVEAGKG 473 (796)
Q Consensus 446 ~~M~~~gv~pd---~~ty~~LI~~~~~~G~~ 473 (796)
+...+. .|+ ...|..|-..|...|..
T Consensus 141 ~~al~~--~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 141 KHATDV--TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHTTS--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc--CCCcccHHHHHHHHHHHHHHHHH
Confidence 998875 365 45666666677666655
No 81
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.60 E-value=0.0028 Score=70.32 Aligned_cols=265 Identities=9% Similarity=-0.026 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C---CCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhc
Q 003768 192 FQLRVELDMCSKRGDVMGAIRLYDKAQRE-----G---IKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVST 263 (796)
Q Consensus 192 ~tyn~lI~a~~k~G~~~~A~~lf~~M~~~-----G---i~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~ 263 (796)
..||.|=..+...|+.++|++.|++..+. + -.-...+|+.+=.+|. ..|++++|...+.-.
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~----------~~g~~~~A~~~~~ka- 120 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY----------HMGRLSDVQIYVDKV- 120 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH----------HTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH----------HcCChHHHHHHHHHH-
Confidence 78999989999999999999999987632 1 1224578888888888 789999998888411
Q ss_pred cCchhhhccC-C---CCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceec------------cchh
Q 003768 264 MNSTELGDSR-D---MDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL------------NSQL 327 (796)
Q Consensus 264 ~~s~em~~~~-g---v~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~------------~g~~ 327 (796)
.++.... + .....+|+.+-.+ ......+++++|...|++..+. .|+...+. .++.
T Consensus 121 ---~~i~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~ 191 (472)
T 4g1t_A 121 ---KHVCEKFSSPYRIESPELDCEEGWT----RLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPS 191 (472)
T ss_dssp ---HHHHHHSCCSSCCCCHHHHHHHHHH----HHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCC
T ss_pred ---HHHhHhcccccchhhHHHHHHHHHH----HHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHH
Confidence 1221110 1 1111223322222 0022345789999999988765 36543221 2334
Q ss_pred hhHHhhhhcC---CCCc-ccccccccccccchhhHHHHHH----hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003768 328 LDGRSNLERG---PDDQ-SRKKDWSIDNQDADEIRLSEDA----KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS 399 (796)
Q Consensus 328 ~~A~~l~~~m---~pd~-~ty~~~~~~~~~~~n~lI~~~~----k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~ 399 (796)
.+|+..+.+. .|+. ..+ ..+-..+. ..++.++|.+++++..... +.+..++..+...|..
T Consensus 192 ~~al~~~~~al~l~p~~~~~~-----------~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 192 QNAIDPLRQAIRLNPDNQYLK-----------VLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp CCTHHHHHHHHHHCSSCHHHH-----------HHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCcchHHH-----------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 4555555443 3332 222 22322333 3457889999998877653 4567789999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHH-------------------cCChHHHHHHHHHHHhCCCCCCHHH
Q 003768 400 MGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCN-------------------NGDVDKACSVEEHMLEHGVYPEEPE 459 (796)
Q Consensus 400 ~g~~~~A~~l~~~M~~~gi~Pd~-~ty~~LI~~~~~-------------------~G~~~~A~~l~~~M~~~gv~pd~~t 459 (796)
.|++++|...+++..+. .|+. .+|..+-..|.. .+..++|...++...+.. ..+...
T Consensus 260 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 336 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRV 336 (472)
T ss_dssp TTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCC
T ss_pred cCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhh
Confidence 99999999999998765 3543 334333333321 123566777777766543 123456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 003768 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (796)
Q Consensus 460 y~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~ 493 (796)
+..+-..|...|++++|...|++.... .+.+.
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~--~~~~~ 368 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSK--ELTPV 368 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS--CCCHH
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhc--CCCCh
Confidence 777888999999999999999998876 55554
No 82
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.57 E-value=0.0027 Score=66.98 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=77.9
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-cccH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR-LRSY 425 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~----gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~Pd-~~ty 425 (796)
+.+-..|.+ |++++|.+.|++.... |-.. -..+++.+...|.+.|++++|...|++..+. +..+. ...|
T Consensus 120 ~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (307)
T 2ifu_A 120 DRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKC 198 (307)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHH
Confidence 344455666 8888888888766542 2111 1457888899999999999999999987653 22121 1255
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCChhHHHHH
Q 003768 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPE------EPELEALLRVSVEAGKGDRVYYL 479 (796)
Q Consensus 426 ~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd------~~ty~~LI~~~~~~G~~~~A~~l 479 (796)
..+...+...|+.++|...|++.. . .|+ ......++.++ ..|+.+.+..+
T Consensus 199 ~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 199 IAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 556667777799999999999877 3 332 12344555555 56776665553
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.56 E-value=0.00098 Score=79.49 Aligned_cols=162 Identities=13% Similarity=0.080 Sum_probs=132.3
Q ss_pred chhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhH
Q 003768 279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIR 358 (796)
Q Consensus 279 ~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~l 358 (796)
..|+.|=.. +.+.|++++|...|++-.+. .|+... .| +.+
T Consensus 10 ~al~nLG~~------~~~~G~~~eAi~~~~kAl~l--~P~~~~---------------------a~-----------~nL 49 (723)
T 4gyw_A 10 DSLNNLANI------KREQGNIEEAVRLYRKALEV--FPEFAA---------------------AH-----------SNL 49 (723)
T ss_dssp HHHHHHHHH------HHHTTCHHHHHHHHHHHHHH--CSCCHH---------------------HH-----------HHH
T ss_pred HHHHHHHHH------HHHcCCHHHHHHHHHHHHHh--CCCCHH---------------------HH-----------HHH
Confidence 345556555 88999999999999988765 244221 12 667
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcCC
Q 003768 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGD 437 (796)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G~ 437 (796)
-..|.+.|++++|.+.|++..+.. +-+..+|..|-.+|.+.|++++|.+.|++..+. .|+ ...|+.+-..|.+.|+
T Consensus 50 g~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~ 126 (723)
T 4gyw_A 50 ASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGN 126 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 788999999999999999988753 335789999999999999999999999988765 344 5688888899999999
Q ss_pred hHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 438 VDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 438 ~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
.++|.+.|++..+.. | +...|..|...|...|++++|.+.+++..+
T Consensus 127 ~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 127 IPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 999999999988754 5 467889999999999999999988887654
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.54 E-value=0.0036 Score=66.48 Aligned_cols=125 Identities=9% Similarity=0.087 Sum_probs=95.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHH--hcC--ChHHHHHHHHHHHHCCCCCCcccHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-----NEASLTAVGRMAM--SMG--DGDMAFDMVKRMKSLGINPRLRSYG 426 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~p-----d~~ty~~LI~~~~--~~g--~~~~A~~l~~~M~~~gi~Pd~~ty~ 426 (796)
-.++..+.+.|+.+.|.+++++|.+. .| +..+..-|+.++. ..| +..+|+.+|+++.+. .|+..+-.
T Consensus 140 ~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~ 215 (310)
T 3mv2_B 140 LLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQL 215 (310)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHH
Confidence 56788999999999999999999875 46 3667777777733 334 899999999998655 36544556
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhC-----CC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 427 PALSVFCNNGDVDKACSVEEHMLEH-----GV----YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 427 ~LI~~~~~~G~~~~A~~l~~~M~~~-----gv----~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.++.++.+.|++++|.++++.+.+. .. .-|..++..+|..+...|+ +|.+++.++...
T Consensus 216 lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 216 GLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 6777889999999999999977653 11 2355666566666666776 899999999987
No 85
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.41 E-value=0.0046 Score=66.98 Aligned_cols=126 Identities=10% Similarity=-0.031 Sum_probs=89.8
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----cccHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCL-----DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYG 426 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~-----~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd----~~ty~ 426 (796)
+.+-..|...|++++|.+.|++... .. +....++..+...|.+.|+.++|...+++..+..-..+ ...+.
T Consensus 226 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 304 (378)
T 3q15_A 226 LNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFL 304 (378)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5566677888999999999988776 32 33367888999999999999999999998876422211 22344
Q ss_pred HHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 427 PALSVFCNNGD---VDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 427 ~LI~~~~~~G~---~~~A~~l~~~M~~~gv~pd~-~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
.+-..+...|+ +.+|...++. .+..|+. ..+..|-..|...|+.++|...|++...
T Consensus 305 ~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 305 FLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445556677 7777777765 3333333 3556788888999999999999988754
No 86
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.41 E-value=0.0036 Score=54.62 Aligned_cols=91 Identities=20% Similarity=0.229 Sum_probs=41.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~ 437 (796)
+...+.+.|++++|.++|+++.... +.+..++..+...+...|++++|..+++++.+.. ..+..++..+...|...|+
T Consensus 15 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 92 (125)
T 1na0_A 15 LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGD 92 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcC
Confidence 3344444555555555555544332 2234444445555555555555555555444331 1223344444444444444
Q ss_pred hHHHHHHHHHHHh
Q 003768 438 VDKACSVEEHMLE 450 (796)
Q Consensus 438 ~~~A~~l~~~M~~ 450 (796)
.++|...++.+.+
T Consensus 93 ~~~A~~~~~~~~~ 105 (125)
T 1na0_A 93 YDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 87
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.40 E-value=0.0084 Score=59.53 Aligned_cols=194 Identities=11% Similarity=-0.063 Sum_probs=121.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhh
Q 003768 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (796)
Q Consensus 190 d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em 269 (796)
|...|..+=..+.+.|++++|+..|+...+..-.++...+..+-.++. ..|+.++|...|
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----------~~~~~~~A~~~~---------- 65 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD----------NIKKYKEAADYF---------- 65 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH----------HTTCHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH----------HhhcHHHHHHHH----------
Confidence 346677777788999999999999999997764466665555444444 445555555555
Q ss_pred hccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCccccccccc
Q 003768 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (796)
Q Consensus 270 ~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~ 349 (796)
++..+. .|+... .|
T Consensus 66 --------------------------------------~~al~~--~p~~~~---------------------~~----- 79 (228)
T 4i17_A 66 --------------------------------------DIAIKK--NYNLAN---------------------AY----- 79 (228)
T ss_dssp --------------------------------------HHHHHT--TCSHHH---------------------HH-----
T ss_pred --------------------------------------HHHHHh--CcchHH---------------------HH-----
Confidence 333322 122110 11
Q ss_pred ccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-
Q 003768 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE-------ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR- 421 (796)
Q Consensus 350 ~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~-------~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd- 421 (796)
..+-..|.+.|++++|.+.|++..+.. +-+. .+|..+-..+...|++++|...|++..+. .|+
T Consensus 80 ------~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~ 150 (228)
T 4i17_A 80 ------IGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKK 150 (228)
T ss_dssp ------HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHH
T ss_pred ------HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCc
Confidence 445566777788888888888777643 2233 45777777888889999999999887654 455
Q ss_pred --cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 422 --LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 422 --~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
...|..+-..|... +..+++.+...+ ..+...|..+.. ...+.+++|...|++..+.
T Consensus 151 ~~~~~~~~l~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 151 WKTDALYSLGVLFYNN-----GADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 34444444445433 344455554433 234555555443 3456688899999888776
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.40 E-value=0.0013 Score=69.90 Aligned_cols=126 Identities=8% Similarity=-0.042 Sum_probs=99.5
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CcccHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-----RLRSYGPAL 429 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-----d~~ty~~LI 429 (796)
..+-..+...|++++|++++.+-...|- .-+...+..++..+.+.|+.+.|.+++++|.+. .| +..+..-|.
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~La 181 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLA 181 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHH
Confidence 4566778889999999999998866553 236778889999999999999999999999875 45 245555566
Q ss_pred HHHH--HcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 430 SVFC--NNG--DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 430 ~~~~--~~G--~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
.++. ..| +..+|+.+|+++.+.. |+..+...|+.++.+.|++++|..+|+.+.+
T Consensus 182 ea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 182 ESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5633 334 8999999999997754 6655556677789999999999999997765
No 89
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.37 E-value=0.0025 Score=73.42 Aligned_cols=128 Identities=9% Similarity=-0.070 Sum_probs=109.4
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+-..|.+.|++++|.+.|++..+.. +-+..+|..+...|...|++++|.+.+++..+.. .-+...|..+-..|.+.
T Consensus 27 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 104 (568)
T 2vsy_A 27 LMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDA 104 (568)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 667778889999999999999988764 3467899999999999999999999999987762 22456788888999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHhC
Q 003768 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGDRVYYLLHKLRTS 486 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~---G~~~~A~~ll~~M~~~ 486 (796)
|+.++|.+.+++..+.. .-+...+..+...+... |+.++|.+.+++..+.
T Consensus 105 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 105 GQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999999999988754 23567888899999999 9999999999998876
No 90
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.32 E-value=0.0056 Score=59.83 Aligned_cols=125 Identities=10% Similarity=-0.051 Sum_probs=104.9
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G 436 (796)
.+-..+...|++++|.+.|++. +.|+..+|..+...|...|++++|...|++..+.. ..+...|..+-..|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 3445677899999999999876 46788999999999999999999999999987763 235667888888999999
Q ss_pred ChHHHHHHHHHHHhCC--------------CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 437 DVDKACSVEEHMLEHG--------------VYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~g--------------v~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+.++|.+.|+...+.. ..| ....|..+-..|.+.|+.++|...|++....
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999998753 111 2267788888999999999999999999876
No 91
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.25 E-value=0.0014 Score=71.25 Aligned_cols=235 Identities=9% Similarity=-0.062 Sum_probs=156.7
Q ss_pred HhhhcCCcchHHHHHHHHHhcCCCCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---C-CHHHHHH
Q 003768 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE--GIK---L-GQYHYNV 231 (796)
Q Consensus 159 ~~~k~~~~~~A~~vf~~M~~~g~~~~~g~~P-d~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~--Gi~---p-d~~tyn~ 231 (796)
.....++.++|...|++...... ..+..+ ...+|..+-..|...|+++.|+..|.+..+. ... + ...+++.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLI--FVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGG--GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHh--hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34567899999999999754211 111112 2357888888999999999999999998743 111 1 1345555
Q ss_pred HHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCC--CcchhhhcccCccccccccccCChHHHHHHHHH
Q 003768 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (796)
Q Consensus 232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~e 309 (796)
+=..|. ..|++++|...|.-. -++....+-. -..+|+.+-.. |...|++++|...|++
T Consensus 190 lg~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~lg~~------y~~~g~~~~A~~~~~~ 249 (383)
T 3ulq_A 190 FATNFL----------DLKQYEDAISHFQKA----YSMAEAEKQPQLMGRTLYNIGLC------KNSQSQYEDAIPYFKR 249 (383)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHH
T ss_pred HHHHHH----------HhcCHHHHHHHHHHH----HHHHHHcCChHHHHHHHHHHHHH------HHHCCCHHHHHHHHHH
Confidence 556666 789999999988511 1121111111 12346666666 8999999999999987
Q ss_pred HHHc----CCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhC----
Q 003768 310 KENL----GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD---- 381 (796)
Q Consensus 310 M~~~----Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~---- 381 (796)
..+. +-.|+.. .++ ..+-..|.+.|++++|.+.|++....
T Consensus 250 al~~~~~~~~~~~~~---------------------~~~-----------~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 297 (383)
T 3ulq_A 250 AIAVFEESNILPSLP---------------------QAY-----------FLITQIHYKLGKIDKAHEYHSKGMAYSQKA 297 (383)
T ss_dssp HHHHHHHTTCGGGHH---------------------HHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccchhHH---------------------HHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 7652 2112110 111 66778889999999999999877642
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 382 EVPMNEASLTAVGRMAMSMGD---GDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 382 gi~pd~~ty~~LI~~~~~~g~---~~~A~~l~~~M~~~gi~Pd~-~ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
+-+.....++.|-..+...|+ .++|+.++++. +..|+. ..+..+-..|...|+.++|.+.++...+
T Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222223446778888888998 77777777664 333433 3566677889999999999999988764
No 92
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.22 E-value=0.0078 Score=52.37 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~ 466 (796)
..+|..+...+...|++++|..+++++.+.. ..+..++..+...+.+.|+.++|..+++.+.+.. ..+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5678889999999999999999999998763 2356778888899999999999999999998754 3467888999999
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 003768 467 SVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 467 ~~~~G~~~~A~~ll~~M~~~ 486 (796)
+...|++++|...|+++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999998876
No 93
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.22 E-value=0.0073 Score=56.02 Aligned_cols=127 Identities=11% Similarity=0.015 Sum_probs=96.4
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+-..+...|++++|...|++..... +.+..++..+...+...|++++|...+++..+.. ..+...|..+-..+...
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence 555667788999999999999887753 3467888899999999999999999999887653 23456777778888899
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 436 GDVDKACSVEEHMLEHGVYPEEPEL--EALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~pd~~ty--~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
|+.++|.+.|+...+..- .+...+ -.+...+.+.|++++|...+.....
T Consensus 95 ~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 95 GKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999998887531 233444 3334446777888888888876543
No 94
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.21 E-value=0.0037 Score=74.52 Aligned_cols=162 Identities=13% Similarity=0.066 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccccCCcccCCCCChhhHHHHHhhhccCchhh
Q 003768 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (796)
Q Consensus 191 ~~tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em 269 (796)
...|+.|=..|.+.|++++|++.|++..+. .|+ ...|+.|=.+|. +.|++++|...|.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~----------~~g~~~eA~~~~~--------- 67 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQ----------QQGKLQEALMHYK--------- 67 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHH----------HTTCHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH----------HcCCHHHHHHHHH---------
Confidence 467888888999999999999999998865 343 556666655555 5566666666663
Q ss_pred hccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcc-eeccchhhhHHhhhhcCCCCcccccccc
Q 003768 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH-MKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (796)
Q Consensus 270 ~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~-ty~~g~~~~A~~l~~~m~pd~~ty~~~~ 348 (796)
+..+. .|+.. .|
T Consensus 68 ---------------------------------------~Al~l--~P~~~~a~-------------------------- 80 (723)
T 4gyw_A 68 ---------------------------------------EAIRI--SPTFADAY-------------------------- 80 (723)
T ss_dssp ---------------------------------------HHHHH--CTTCHHHH--------------------------
T ss_pred ---------------------------------------HHHHh--CCCCHHHH--------------------------
Confidence 32222 12211 11
Q ss_pred cccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHH
Q 003768 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGP 427 (796)
Q Consensus 349 ~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~ 427 (796)
+.+-..|.+.|++++|.+.|++..+.. +-+..+|+.|-.+|.+.|++++|...|++..+. .|+ ...|..
T Consensus 81 -------~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~ 150 (723)
T 4gyw_A 81 -------SNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCN 150 (723)
T ss_dssp -------HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHH
T ss_pred -------HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhh
Confidence 445555666666777777666665532 224556677777777777777777777766554 233 445666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh
Q 003768 428 ALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 428 LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
+...|...|++++|.+.+++..+
T Consensus 151 L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 151 LAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHH
T ss_pred hhhHHHhcccHHHHHHHHHHHHH
Confidence 66667777777766666655543
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.17 E-value=0.0078 Score=61.28 Aligned_cols=158 Identities=11% Similarity=0.033 Sum_probs=117.1
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+.+.|++++|...|++..... |+.... .++ + ..+-..|.+.|++++|..
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~~--p~~~~~-----~~a-------------~-----------~~lg~~~~~~~~~~~A~~ 73 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTYG--RTHEWA-----ADA-------------Q-----------FYLARAYYQNKEYLLAAS 73 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGGC--SCSTTH-----HHH-------------H-----------HHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC--CCCcch-----HHH-------------H-----------HHHHHHHHHhCcHHHHHH
Confidence 678899999999999887753 332100 011 1 445667889999999999
Q ss_pred HHHHHHhCCC-CCC-HHHHHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCc-ccH-----------------
Q 003768 374 IYEKMCLDEV-PMN-EASLTAVGRMAMS--------MGDGDMAFDMVKRMKSLGINPRL-RSY----------------- 425 (796)
Q Consensus 374 lf~~M~~~gi-~pd-~~ty~~LI~~~~~--------~g~~~~A~~l~~~M~~~gi~Pd~-~ty----------------- 425 (796)
.|+......- .|. ..++..+..++.. .|++++|...|++..+. .|+. ...
T Consensus 74 ~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~ 151 (261)
T 3qky_A 74 EYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQ 151 (261)
T ss_dssp HHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999987531 122 4567777888888 99999999999998875 2443 233
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhc----------CChhHHHHHHHHHHhC
Q 003768 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPE----EPELEALLRVSVEA----------GKGDRVYYLLHKLRTS 486 (796)
Q Consensus 426 ~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd----~~ty~~LI~~~~~~----------G~~~~A~~ll~~M~~~ 486 (796)
..+-..|.+.|+.++|...|+...+.. |+ ...+..+..+|... |++++|...|+++...
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 234567888999999999999998754 43 45667777777765 8889999999999887
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.16 E-value=0.0063 Score=63.64 Aligned_cols=131 Identities=7% Similarity=-0.110 Sum_probs=96.4
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCCCC-ccc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSM-GDGDMAFDMVKRMKSL----GINPR-LRS 424 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~----gi~p-d~~ty~~LI~~~~~~-g~~~~A~~l~~~M~~~----gi~Pd-~~t 424 (796)
+.+-..|.+.|++++|...|++.... |-.. -..+|+.+-..|... |++++|...|++..+. +-.+. ..+
T Consensus 81 ~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 160 (292)
T 1qqe_A 81 VEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC 160 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHH
Confidence 55556677778888888877765532 2111 135788899999996 9999999999987653 11111 346
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE------PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 425 y~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~------~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
|+.+-..|.+.|+.++|.+.|+...+....... ..|..+..++...|+.++|...|++....
T Consensus 161 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 778888999999999999999999886433222 25677778889999999999999987754
No 97
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.11 E-value=0.011 Score=51.98 Aligned_cols=114 Identities=15% Similarity=0.101 Sum_probs=72.8
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+...+...|++++|.+.|++..... +.+...+..+...+...|++++|...+++..+.. ..+...|..+-..+.+.
T Consensus 16 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 16 KTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHh
Confidence 445556667777777777777766542 3356677777777777777777777777766542 12345566666677777
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003768 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~ 472 (796)
|+.++|...|+...+.. ..+...+..+...+.+.|+
T Consensus 94 ~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 94 NKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 77777777777766543 1244555555555555554
No 98
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.06 E-value=0.0072 Score=63.65 Aligned_cols=128 Identities=13% Similarity=0.058 Sum_probs=93.6
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CcccH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCL----DEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSY 425 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~----~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~P-d~~ty 425 (796)
+-+-..|.+.|++++|.+.|++... .|-.. -..+++.+-..|.. |++++|...|++.... |-.+ -..+|
T Consensus 80 ~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~ 158 (307)
T 2ifu_A 80 EQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELI 158 (307)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 5566777888899889888886543 22111 13578888888888 9999999999887643 1111 13567
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003768 426 GPALSVFCNNGDVDKACSVEEHMLEH----GVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLR 484 (796)
Q Consensus 426 ~~LI~~~~~~G~~~~A~~l~~~M~~~----gv~pd~-~ty~~LI~~~~~~G~~~~A~~ll~~M~ 484 (796)
+.+-..|.+.|+.++|.+.|++..+. +..+.. ..+..+...+...|+.++|...|++..
T Consensus 159 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 159 GKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77888999999999999999988753 222222 256667777778899999999999987
No 99
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.05 E-value=0.0092 Score=58.27 Aligned_cols=121 Identities=7% Similarity=-0.093 Sum_probs=97.0
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+...|++++|...|++. +.|+...+ ..+-..|.+.|++++|.+
T Consensus 16 ~~~~~~~~~A~~~~~~a----~~~~~~~~---------------------------------~~lg~~~~~~g~~~~A~~ 58 (213)
T 1hh8_A 16 AADKKDWKGALDAFSAV----QDPHSRIC---------------------------------FNIGCMYTILKNMTEAEK 58 (213)
T ss_dssp HHHTTCHHHHHHHHHTS----SSCCHHHH---------------------------------HHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH----cCCChHHH---------------------------------HHHHHHHHHcCCHHHHHH
Confidence 66788889888888755 33444333 777788999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--------------C-CcccHHHHHHHHHHcCCh
Q 003768 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN--------------P-RLRSYGPALSVFCNNGDV 438 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~--------------P-d~~ty~~LI~~~~~~G~~ 438 (796)
.|++..... +.+...|..+..+|...|++++|...|++..+..-. | ....|..+-..|.+.|+.
T Consensus 59 ~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (213)
T 1hh8_A 59 AFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137 (213)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH
Confidence 999988754 457789999999999999999999999998875211 1 115677788889999999
Q ss_pred HHHHHHHHHHHhCC
Q 003768 439 DKACSVEEHMLEHG 452 (796)
Q Consensus 439 ~~A~~l~~~M~~~g 452 (796)
++|.+.|+...+..
T Consensus 138 ~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 138 KKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999998754
No 100
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.03 E-value=0.014 Score=60.86 Aligned_cols=163 Identities=6% Similarity=-0.074 Sum_probs=116.7
Q ss_pred ccccCChHHHHHHHHHHHHcC-CCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLG-QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~G-i~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~ 372 (796)
+...|++++|..++++..... ..|+...+ +. .| ..+...+...+++++|.
T Consensus 85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~-------~~-----------~~-----------~~l~~~~~~~~~~~~Ai 135 (293)
T 3u3w_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQF-------LQ-----------WQ-----------YYVAAYVLKKVDYEYCI 135 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCCCHHHHHH-------HH-----------HH-----------HHHHHHHTTSSCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccccCChHHHHH-------HH-----------HH-----------HHHHHHHHcccCHHHHH
Confidence 788899999999998887642 11111000 00 01 34555667778999999
Q ss_pred HHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCC-cccHHHHHHHHHHcCChHHH
Q 003768 373 EIYEKMCLDEVP-MN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----GINPR-LRSYGPALSVFCNNGDVDKA 441 (796)
Q Consensus 373 ~lf~~M~~~gi~-pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----gi~Pd-~~ty~~LI~~~~~~G~~~~A 441 (796)
+.|++....... ++ ..+|+.+-..|...|++++|...|++..+. +..+. ..+|..+-..|.+.|+.++|
T Consensus 136 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A 215 (293)
T 3u3w_A 136 LELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEES 215 (293)
T ss_dssp HHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence 999998874222 23 347999999999999999999999988742 22222 23777888899999999999
Q ss_pred HHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCC-hhHHHHHHHHHHh
Q 003768 442 CSVEEHMLE----HGVYPE-EPELEALLRVSVEAGK-GDRVYYLLHKLRT 485 (796)
Q Consensus 442 ~~l~~~M~~----~gv~pd-~~ty~~LI~~~~~~G~-~~~A~~ll~~M~~ 485 (796)
.+.+++..+ .+-.+. ...|..+-..|.+.|+ .++|...+++...
T Consensus 216 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 216 LYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999987654 233333 5678888888899995 5999988887654
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.00 E-value=0.016 Score=57.86 Aligned_cols=158 Identities=9% Similarity=0.009 Sum_probs=109.9
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+.+.|++++|...|+++.... |+.... .+| + ..+...|.+.|++++|.+
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~--p~~~~~-----~~a-------------~-----------~~lg~~~~~~~~~~~A~~ 62 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRY--PFGPYS-----QQV-------------Q-----------LDLIYAYYKNADLPLAQA 62 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTSTTH-----HHH-------------H-----------HHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCChHH-----HHH-------------H-----------HHHHHHHHhcCCHHHHHH
Confidence 667899999999999988752 221100 001 1 446678888999999999
Q ss_pred HHHHHHhCCCC-CCH-HHHHHHHHHHHh------------------cCChHHHHHHHHHHHHCCCCCCccc-HH------
Q 003768 374 IYEKMCLDEVP-MNE-ASLTAVGRMAMS------------------MGDGDMAFDMVKRMKSLGINPRLRS-YG------ 426 (796)
Q Consensus 374 lf~~M~~~gi~-pd~-~ty~~LI~~~~~------------------~g~~~~A~~l~~~M~~~gi~Pd~~t-y~------ 426 (796)
.|++..+..-. +.. .++-.+-.++.. .|+.++|...|+++.+. .|+..- +.
T Consensus 63 ~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~ 140 (225)
T 2yhc_A 63 AIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV 140 (225)
T ss_dssp HHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH
T ss_pred HHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH
Confidence 99998875311 221 133333333333 57899999999998765 355432 21
Q ss_pred -----------HHHHHHHHcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 427 -----------PALSVFCNNGDVDKACSVEEHMLEHGVYPEE----PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 427 -----------~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~----~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+-..|.+.|+.++|...|+.+.+.- |+. ..+..+..+|.+.|+.++|...++.+...
T Consensus 141 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 141 FLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 23346778899999999999988753 542 46778888999999999999999988876
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.98 E-value=0.0052 Score=58.79 Aligned_cols=126 Identities=8% Similarity=0.089 Sum_probs=81.6
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM-AMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFC 433 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~-~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~ 433 (796)
..+-..|.+.|++++|...|+...... |+...+..+... +...+...+|...+++..+. .|+ ...+..+-..+.
T Consensus 44 ~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~ 119 (176)
T 2r5s_A 44 LAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYN 119 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 556667778888888888888765543 344333222211 12222334467777776654 343 566666777788
Q ss_pred HcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 434 NNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
..|+.++|...|+.+.+..-.+ +...+..|...+...|+.++|...+++...
T Consensus 120 ~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 120 QVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 8888888888888887754222 245777888888888888888888776543
No 103
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.93 E-value=0.0055 Score=58.30 Aligned_cols=122 Identities=11% Similarity=0.074 Sum_probs=95.1
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHH-HHHcCCh--
Q 003768 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-FCNNGDV-- 438 (796)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~-~~~~G~~-- 438 (796)
+...|++++|.+.|++..... +.+...|..+...|...|++++|...|++..+.. ..+...|..+-.. +...|+.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 356778889999998877653 4577899999999999999999999999987652 1244556666666 6688998
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
++|...++...+.. .-+...+..+-..|...|++++|...|++....
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999998764 224677888888999999999999999998876
No 104
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.85 E-value=0.012 Score=51.73 Aligned_cols=97 Identities=16% Similarity=0.159 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCC----HHHHHH
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPE----EPELEA 462 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g--v~pd----~~ty~~ 462 (796)
.|..+...+...|++++|...|++..... ..+...|..+-..|...|+.++|...++...+.. ..++ ...|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45555556666666666666666655442 2234455555556666666666666666655432 1122 455666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 003768 463 LLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 463 LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+-..+...|++++|...|++....
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 666677777777777777776665
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.85 E-value=0.07 Score=53.01 Aligned_cols=87 Identities=13% Similarity=0.044 Sum_probs=66.3
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCH-HHH-----------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-
Q 003768 362 DAKKYAFQRGFEIYEKMCLDEVPMNE-ASL-----------------TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL- 422 (796)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~-~ty-----------------~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~- 422 (796)
+...|+.++|...|+++.+.. |+. .++ -.+...|.+.|++++|...|+++.+. .|+.
T Consensus 106 ~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~ 181 (225)
T 2yhc_A 106 DRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQ 181 (225)
T ss_dssp --CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSH
T ss_pred hcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCC
Confidence 345678999999999988753 331 122 23456788999999999999998875 3543
Q ss_pred ---ccHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003768 423 ---RSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 423 ---~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g 452 (796)
..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 182 ~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 182 ATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 457778889999999999999999988765
No 106
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.84 E-value=0.02 Score=58.20 Aligned_cols=88 Identities=13% Similarity=0.069 Sum_probs=64.3
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHH-----------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----cc
Q 003768 365 KYAFQRGFEIYEKMCLDEVPMNEASL-----------------TAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LR 423 (796)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty-----------------~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd----~~ 423 (796)
.|++++|...|++..... +-+.... -.+...|.+.|++++|...|++..+. .|+ ..
T Consensus 110 ~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~ 186 (261)
T 3qky_A 110 QTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADD 186 (261)
T ss_dssp CHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHH
T ss_pred chhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHH
Confidence 788899999998887653 1122222 45678889999999999999998875 244 23
Q ss_pred cHHHHHHHHHHc----------CChHHHHHHHHHHHhCCCCCCH
Q 003768 424 SYGPALSVFCNN----------GDVDKACSVEEHMLEHGVYPEE 457 (796)
Q Consensus 424 ty~~LI~~~~~~----------G~~~~A~~l~~~M~~~gv~pd~ 457 (796)
.+..+-.+|... |+.++|...|+...+.. |+.
T Consensus 187 a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~ 228 (261)
T 3qky_A 187 ALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDS 228 (261)
T ss_dssp HHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCC
Confidence 555566677765 88999999999988753 553
No 107
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.82 E-value=0.0069 Score=51.78 Aligned_cols=95 Identities=9% Similarity=0.013 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHH
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP---EEPELEALLR 465 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p---d~~ty~~LI~ 465 (796)
.|..+...+...|++++|...|++..+.. ..+...|..+-..+...|+.++|.+.++...+.. | +...+..+-.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHHH
Confidence 34445555566666666666666655432 1234445555556666666666666666666543 3 3556666666
Q ss_pred HHHhc-CChhHHHHHHHHHHhC
Q 003768 466 VSVEA-GKGDRVYYLLHKLRTS 486 (796)
Q Consensus 466 ~~~~~-G~~~~A~~ll~~M~~~ 486 (796)
.+.+. |+.++|.+.|.+....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 66677 7777777777766655
No 108
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.80 E-value=0.0098 Score=52.68 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=46.1
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+-..+.+.|++++|.+.|++..... +.+..++..+...+...|++++|...+++..+.. ..+...|..+-..+.+.
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 97 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAM 97 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHH
Confidence 334444555555555555555555432 2244455555555555555555555555554431 11233444444455555
Q ss_pred CChHHHHHHHHHHHh
Q 003768 436 GDVDKACSVEEHMLE 450 (796)
Q Consensus 436 G~~~~A~~l~~~M~~ 450 (796)
|+.++|.+.|+...+
T Consensus 98 ~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 98 KDYTKAMDVYQKALD 112 (133)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555443
No 109
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.74 E-value=0.0046 Score=59.69 Aligned_cols=131 Identities=14% Similarity=-0.019 Sum_probs=97.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC--Cccc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCL----DEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP--RLRS 424 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~----~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~P--d~~t 424 (796)
+.+-..|...|++++|.+.|++... .+..| ...++..+-..+...|++++|...+++.... +-.| ....
T Consensus 30 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 109 (203)
T 3gw4_A 30 FMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASAN 109 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHH
Confidence 6677788889999999999988775 22222 3457888889999999999999999876543 2112 2345
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 425 YGPALSVFCNNGDVDKACSVEEHMLEH----GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 425 y~~LI~~~~~~G~~~~A~~l~~~M~~~----gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+..+-..+...|+.++|...+++..+. +-.. -..++..|-..+...|+.++|...+++..+.
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 667777888999999999999887642 2111 1234577778889999999999999876543
No 110
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.73 E-value=0.04 Score=57.20 Aligned_cols=94 Identities=5% Similarity=-0.056 Sum_probs=71.0
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHh----C-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-ccc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCL----D-EVPMNE-ASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR-LRS 424 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~----~-gi~pd~-~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~Pd-~~t 424 (796)
+.+-..|...|++++|.+.|++... . +..+.. .+|..+...|.+.|++++|...+++..+. +..+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 6677788899999999999988874 1 222333 38899999999999999999999876543 22222 456
Q ss_pred HHHHHHHHHHcC-ChHHHHHHHHHHH
Q 003768 425 YGPALSVFCNNG-DVDKACSVEEHML 449 (796)
Q Consensus 425 y~~LI~~~~~~G-~~~~A~~l~~~M~ 449 (796)
|..+=..|.+.| +.++|.+.++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 777777888889 4699998887754
No 111
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.69 E-value=0.023 Score=48.36 Aligned_cols=95 Identities=9% Similarity=0.026 Sum_probs=80.6
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CcccHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP--RLRSYGPALSVFC 433 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P--d~~ty~~LI~~~~ 433 (796)
..+-..+.+.|++++|...|++..+.. +.+..+|..+...+...|++++|...+++..+..- . +...|..+-..+.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAKADALR 87 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHHH
Confidence 667778889999999999999988754 34678899999999999999999999999887631 2 4677788888899
Q ss_pred Hc-CChHHHHHHHHHHHhCC
Q 003768 434 NN-GDVDKACSVEEHMLEHG 452 (796)
Q Consensus 434 ~~-G~~~~A~~l~~~M~~~g 452 (796)
+. |+.++|.+.+.......
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGGC
T ss_pred HHhCCHHHHHHHHHHHhhcc
Confidence 99 99999999999988754
No 112
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.69 E-value=0.018 Score=68.04 Aligned_cols=126 Identities=10% Similarity=-0.027 Sum_probs=106.0
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCN 434 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~ 434 (796)
..+-..|.+.|++++|.+.|++..+.. +-+...|..+-.+|...|++++|...|++..+. .| +...|..+-..|.+
T Consensus 437 ~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~ 513 (681)
T 2pzi_A 437 LMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAEL 513 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHH
Confidence 556677889999999999999988753 346789999999999999999999999998765 34 45677778888999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|+.++ .+.|+...+.. .-+...|..+-.++.+.|+.++|...|++..+.
T Consensus 514 ~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 514 AGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp HTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred cCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 999999 99999988754 125678888999999999999999999987655
No 113
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.69 E-value=0.019 Score=50.37 Aligned_cols=108 Identities=14% Similarity=0.162 Sum_probs=86.7
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCC----cccHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI--NPR----LRSYGPAL 429 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi--~Pd----~~ty~~LI 429 (796)
..+-..+...|++++|...|++..... +.+...+..+...+...|++++|...+++.....- .++ ...|..+-
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 556677889999999999999988754 45778899999999999999999999998876521 122 66778888
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003768 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (796)
Q Consensus 430 ~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~ 466 (796)
..+.+.|+.++|.+.|+...+.. |+......+-..
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 89999999999999999998854 666555555443
No 114
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.66 E-value=0.011 Score=58.36 Aligned_cols=174 Identities=11% Similarity=0.045 Sum_probs=112.1
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+...|++++|...|++..+.. |+.... +.. ..+...... .....+.+-..|.+.|++++|..
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~--p~~~~~--------~~~-~~~~~~~~~-------~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIALN--IDRTEM--------YYW-TNVDKNSEI-------SSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHHH--------HHH-HHSCTTSHH-------HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCChHH--------HHH-hhhcchhhh-------hHHHHHHHHHHHHHCCCHHHHHH
Confidence 667899999999999887652 332111 000 000000000 00000226667889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcCC--hHHHHHHHHHHHh
Q 003768 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGD--VDKACSVEEHMLE 450 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G~--~~~A~~l~~~M~~ 450 (796)
.|++..+.. +-+...|..+-..+...|++++|...|++..+. .|+ ...|..+-..|...|+ .+.+...+....
T Consensus 76 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~- 151 (208)
T 3urz_A 76 FYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS- 151 (208)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-
Confidence 999988764 347889999999999999999999999998875 354 4566666666655543 344555555543
Q ss_pred CCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhH
Q 003768 451 HGVYPEEPEL--EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST 494 (796)
Q Consensus 451 ~gv~pd~~ty--~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t 494 (796)
.|+...+ ..+-.++...|++++|...|++..+. .|+...
T Consensus 152 ---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 152 ---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred ---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 3554433 23333455678999999999999877 665543
No 115
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.65 E-value=0.081 Score=62.38 Aligned_cols=144 Identities=8% Similarity=-0.015 Sum_probs=105.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLD-E-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~-g-i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~ 433 (796)
-..+....+.|.++.|..+|....+. + ..+......+.|.-.+ .++.+.|..+|+...+. +.-+...+...+....
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 55566667788999999999999876 3 2344444444443222 35699999999988776 3224444567788888
Q ss_pred HcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHh
Q 003768 434 NNGDVDKACSVEEHMLEHGVYP--EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFN 503 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~gv~p--d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~I~~~~~ 503 (796)
..|+.+.|..+|+........+ ....|...++.-.+.|+.+.+..+..+|.+. .|..+....+..-++
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHTC
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHhc
Confidence 8999999999999988765322 3468889999889999999999999999998 666555555444443
No 116
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.63 E-value=0.049 Score=46.61 Aligned_cols=98 Identities=13% Similarity=0.036 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~ 466 (796)
...+..+...+...|++++|...|++..... ..+...+..+-..+...|+.++|...++...+.. ..+...+..+-..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3455666666777777777777777765542 1244555556666667777777777777766543 1245666677777
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 003768 467 SVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 467 ~~~~G~~~~A~~ll~~M~~~ 486 (796)
+...|+.++|...+++....
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 77777777777777776654
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.59 E-value=0.043 Score=56.99 Aligned_cols=163 Identities=6% Similarity=-0.067 Sum_probs=115.2
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+...|++++|...+.+..+..-..+.. . ..+. .+ ..+...+...|++++|.+
T Consensus 85 ~~~~~~y~~A~~~~~~~l~~~~~~~~~-~-----~~~~-----------~~-----------~~~~~~~~~~~~~~~A~~ 136 (293)
T 2qfc_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEF-Q-----QFLQ-----------WQ-----------YYVAAYVLKKVDYEYCIL 136 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCCCHHH-H-----HHHH-----------HH-----------HHHHHHHHTSSCHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHhccccCChhH-H-----HHHH-----------HH-----------HHHHHHHhcCCCHHHHHH
Confidence 778899999999998877653211000 0 0000 00 334455677889999999
Q ss_pred HHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC-----cccHHHHHHHHHHcCChHHHH
Q 003768 374 IYEKMCLDE---VPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPR-----LRSYGPALSVFCNNGDVDKAC 442 (796)
Q Consensus 374 lf~~M~~~g---i~pd--~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-gi~Pd-----~~ty~~LI~~~~~~G~~~~A~ 442 (796)
.|++..... ..+. ..+|+.+-..|...|++++|...|++..+. ...|+ ..+|..+-..|.+.|+.++|.
T Consensus 137 ~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al 216 (293)
T 2qfc_A 137 ELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL 216 (293)
T ss_dssp HHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHH
Confidence 999887532 1222 458999999999999999999999987632 11222 257888888999999999999
Q ss_pred HHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 003768 443 SVEEHMLEH----GVYPE-EPELEALLRVSVEAGKGDRV-YYLLHKLR 484 (796)
Q Consensus 443 ~l~~~M~~~----gv~pd-~~ty~~LI~~~~~~G~~~~A-~~ll~~M~ 484 (796)
+.++...+. +.... ..+|..+-..|.+.|+.++| ...+++..
T Consensus 217 ~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 999887643 22222 56788888899999999999 77676643
No 118
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.57 E-value=0.023 Score=50.15 Aligned_cols=101 Identities=9% Similarity=-0.037 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003768 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (796)
Q Consensus 384 ~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (796)
+.+...|..+...+...|++++|...|++..+.. ..+...|..+-..|...|+.++|.+.++...+.. ..+...|..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 4467788999999999999999999999987652 2356777888888899999999999999988754 2357788889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 003768 464 LRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 464 I~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
-..+.+.|++++|...|++....
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999998775
No 119
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.56 E-value=0.009 Score=62.42 Aligned_cols=123 Identities=7% Similarity=0.007 Sum_probs=64.9
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHH-HHHHHcCCh
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDV 438 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI-~~~~~~G~~ 438 (796)
..+.+.|++++|..+|++..... +-+...+..|...+.+.|++++|..++++.... .|+........ ..+...++.
T Consensus 125 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~ 201 (287)
T 3qou_A 125 MQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAAD 201 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhccc
Confidence 34455666666666666655432 224455666666666666666666666654332 23322211111 124445555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+.|.+.++...+.. ..+...+..|-..|...|+.++|...|.++...
T Consensus 202 ~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 202 TPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp CHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55666665555433 123455555666666666666666666666554
No 120
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.54 E-value=0.011 Score=55.29 Aligned_cols=118 Identities=9% Similarity=0.026 Sum_probs=94.0
Q ss_pred HhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHH
Q 003768 363 AKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDK 440 (796)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~ 440 (796)
...|++++|++.|...... .| +...+-.|-..|.+.|++++|.+.|++..+. .| +...|..+-..|.+.|+.++
T Consensus 8 ~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHH
Confidence 4567889999998876643 23 3445667889999999999999999998875 34 46778888889999999999
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHH-HHHHHhC
Q 003768 441 ACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYL-LHKLRTS 486 (796)
Q Consensus 441 A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~l-l~~M~~~ 486 (796)
|...|+...+.. | +...|..|-..|.+.|+.++|.+. +++..+.
T Consensus 84 A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 84 AVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999998754 6 467888899999999999876655 5666554
No 121
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=96.51 E-value=0.034 Score=63.82 Aligned_cols=118 Identities=12% Similarity=0.026 Sum_probs=85.6
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHH
Q 003768 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACS 443 (796)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~ 443 (796)
.|++++|.+.|++..+.. +-+...|..+...|...|++++|.+.+++..+. .| +...|..+-..|...|+.++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 367889999998877653 335788999999999999999999999998765 34 46677888889999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+++..+.. .-+...|..|-..|.+.|+.++|.+.|++..+.
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999988754 235678889999999999999999999998876
No 122
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.50 E-value=0.053 Score=46.42 Aligned_cols=95 Identities=13% Similarity=0.078 Sum_probs=80.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+...+...|++++|.+.|++..... +.+...+..+...+...|++++|...+++..+.. ..+...|..+-..+...
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHH
Confidence 556677888999999999999988753 3478889999999999999999999999987763 23466778888899999
Q ss_pred CChHHHHHHHHHHHhCC
Q 003768 436 GDVDKACSVEEHMLEHG 452 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~g 452 (796)
|+.++|.+.++...+..
T Consensus 86 ~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp TCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 99999999999988754
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.50 E-value=0.026 Score=51.01 Aligned_cols=89 Identities=16% Similarity=0.136 Sum_probs=51.9
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChH
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~ 439 (796)
..|.+.|++++|.+.|++..+.. +-+..+|..+-.+|.+.|++++|...|++..+.. ..+...|..+-.+|...|+.+
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 98 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWS 98 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHH
Confidence 34556666666666666655432 3355666666666666666666666666655431 123445555555566666666
Q ss_pred HHHHHHHHHHh
Q 003768 440 KACSVEEHMLE 450 (796)
Q Consensus 440 ~A~~l~~~M~~ 450 (796)
+|.+.|+...+
T Consensus 99 ~A~~~~~~al~ 109 (126)
T 4gco_A 99 KAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665555
No 124
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.48 E-value=0.009 Score=56.75 Aligned_cols=123 Identities=7% Similarity=0.003 Sum_probs=91.5
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+...|++++|...|++..... |+.. ..| ..+-..|...|++++|.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~---------------------~~~-----------~~lg~~~~~~~~~~~A~~ 65 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNS---------------------EQW-----------ALLGEYYLWQNDYSNSLL 65 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCH---------------------HHH-----------HHHHHHHHHTTCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcH---------------------HHH-----------HHHHHHHHHcCCHHHHHH
Confidence 667788888888887776542 2221 112 667778889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH-HHhcCCh--HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 374 IYEKMCLDEVPMNEASLTAVGRM-AMSMGDG--DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~-~~~~g~~--~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
.|++..... +.+...+..+..+ +...|+. ++|...+++..+.. .-+...+..+-..|...|+.++|...|+...+
T Consensus 66 ~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 66 AYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 999988753 3367788888888 7799998 99999999988763 12356677788889999999999999999887
Q ss_pred CC
Q 003768 451 HG 452 (796)
Q Consensus 451 ~g 452 (796)
..
T Consensus 144 ~~ 145 (177)
T 2e2e_A 144 LN 145 (177)
T ss_dssp TC
T ss_pred hC
Confidence 54
No 125
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.48 E-value=0.055 Score=47.17 Aligned_cols=99 Identities=10% Similarity=0.010 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~ 465 (796)
+...+..+...+...|++++|...+++..... ..+...|..+-..+...|+.++|.+.++...+.. ..+...|..+-.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45677888899999999999999999987652 2356778888889999999999999999988753 235778888889
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 003768 466 VSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 466 ~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+...|+.++|...|++....
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999998876
No 126
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.48 E-value=0.056 Score=58.28 Aligned_cols=127 Identities=14% Similarity=0.028 Sum_probs=92.3
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCcccHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPRLRSYG 426 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~----gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~Pd~~ty~ 426 (796)
+.+-..|...|++++|.+.|++.... +-.+ ...+++.|-..|...|++++|...+++..+. +-.....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 55667788889999999998876642 2111 2357888999999999999999999987761 2222356777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCC---hhHHHHHHHH
Q 003768 427 PALSVFCNNGDVDKACSVEEHMLEHG----VYPEEPELEALLRVSVEAGK---GDRVYYLLHK 482 (796)
Q Consensus 427 ~LI~~~~~~G~~~~A~~l~~~M~~~g----v~pd~~ty~~LI~~~~~~G~---~~~A~~ll~~ 482 (796)
.+-..|.+.|+.++|.+.++...+.. -......+..|-..+...|+ ..+|..++++
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 78889999999999999999887642 12223455566666667777 6777777766
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.45 E-value=0.04 Score=58.90 Aligned_cols=127 Identities=11% Similarity=-0.000 Sum_probs=103.1
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR 421 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--------------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd 421 (796)
..+-..|.+.|++++|...|++.....-... ..+|..+..+|.+.|++++|...+++..+.. ..+
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~ 229 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNN 229 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCc
Confidence 5566778899999999999998887542211 5899999999999999999999999988763 235
Q ss_pred cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 003768 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRV-YYLLHKLRT 485 (796)
Q Consensus 422 ~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A-~~ll~~M~~ 485 (796)
...|..+-.+|...|+.++|.+.|+...+.. | +...+..|-..+.+.|+.++| ..++..|..
T Consensus 230 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 230 EKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888889999999999999999988754 4 567788888888899998888 446666654
No 128
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.45 E-value=0.018 Score=53.75 Aligned_cols=112 Identities=12% Similarity=0.042 Sum_probs=86.1
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCN 434 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~ 434 (796)
-.+-..|.+.|++++|.+.|++..+.. +-+..+|..+-.+|.+.|++++|...|++..+. .|+ ...|..+-..|.+
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 345667889999999999999988754 347889999999999999999999999998875 354 5677778888999
Q ss_pred cCChHHHHHH-HHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 003768 435 NGDVDKACSV-EEHMLEHGVYP-EEPELEALLRVSVEAGK 472 (796)
Q Consensus 435 ~G~~~~A~~l-~~~M~~~gv~p-d~~ty~~LI~~~~~~G~ 472 (796)
.|+.++|.+. ++...+. .| +...|...-..+...|+
T Consensus 112 ~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 112 NDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred cCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 9999876665 4666653 35 45556655555555553
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.44 E-value=0.039 Score=51.91 Aligned_cols=92 Identities=12% Similarity=-0.001 Sum_probs=59.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~ 437 (796)
+-..+.+.|++++|.+.|+...... +-+...|..+-.+|...|++++|...|++..+.. +-+...|..+=.+|.+.|+
T Consensus 42 lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~ 119 (151)
T 3gyz_A 42 YAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKA 119 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 3345566777777777777766543 3356667777777777777777777777666542 1234555556666677777
Q ss_pred hHHHHHHHHHHHhC
Q 003768 438 VDKACSVEEHMLEH 451 (796)
Q Consensus 438 ~~~A~~l~~~M~~~ 451 (796)
.++|.+.|+...+.
T Consensus 120 ~~eA~~~~~~al~l 133 (151)
T 3gyz_A 120 PLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777766664
No 130
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.32 E-value=0.063 Score=47.99 Aligned_cols=100 Identities=12% Similarity=-0.058 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003768 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (796)
Q Consensus 385 pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI 464 (796)
.+...|..+...+...|++++|...|++..... ..+...|..+-..+...|+.++|...++...+.. .-+...|..+-
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 456778888888888999999999888877653 2245667777778888899999999888887754 22567788888
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 003768 465 RVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 465 ~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..|...|++++|...|.+....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888999999999988887654
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.29 E-value=0.16 Score=52.47 Aligned_cols=94 Identities=5% Similarity=-0.077 Sum_probs=70.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHh----CCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-ccc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCL----DEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR-LRS 424 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~----~gi~p--d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~Pd-~~t 424 (796)
+.+-..|...|++++|.+.|++... .+-.+ ...+|+.+...|.+.|++++|...+++..+. +.... ..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 6677788899999999999988762 11111 1268899999999999999999999987543 11111 456
Q ss_pred HHHHHHHHHHcCChHHH-HHHHHHHH
Q 003768 425 YGPALSVFCNNGDVDKA-CSVEEHML 449 (796)
Q Consensus 425 y~~LI~~~~~~G~~~~A-~~l~~~M~ 449 (796)
|..+-..|.+.|+.++| ...++...
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 77777888999999999 77676543
No 132
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.27 E-value=0.09 Score=46.36 Aligned_cols=90 Identities=17% Similarity=0.051 Sum_probs=55.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCcc----cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC----HHHHHHHH
Q 003768 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLR----SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE----EPELEALL 464 (796)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~----ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd----~~ty~~LI 464 (796)
+...+...|++++|...|+...+.. |+.. .+..+-..+.+.|+.++|...|+...+.. |+ ...+..+-
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la 83 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHH
Confidence 3445556667777777776665532 3322 44445556666777777777777666543 33 44556666
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 003768 465 RVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 465 ~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..+...|+.++|...|++....
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6677777777777777777665
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.27 E-value=0.058 Score=50.68 Aligned_cols=102 Identities=4% Similarity=-0.091 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEAL 463 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~L 463 (796)
+...+..+-..+.+.|++++|...|+..... .| +...|..+=.+|...|+.++|.+.|+...+.. | +...|..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~l 110 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHH
Confidence 3456778888999999999999999998876 34 45667777788999999999999999998854 4 46778888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 003768 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (796)
Q Consensus 464 I~~~~~~G~~~~A~~ll~~M~~~~~~~~p~ 493 (796)
-.+|.+.|+.++|...|++.... .+.+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 89999999999999999999887 55554
No 134
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.23 E-value=0.1 Score=46.89 Aligned_cols=98 Identities=15% Similarity=0.065 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd----~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (796)
+...+..+...+...|++++|...|++..+. .|+ ...|..+-..|...|++++|.+.++...+.. ..+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4556666777777777777777777766543 344 4556666666777777777777777766542 12455666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 462 ALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 462 ~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+-..|...|+.++|...|++....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6777777777777777777777654
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.20 E-value=0.061 Score=51.48 Aligned_cols=95 Identities=7% Similarity=-0.130 Sum_probs=67.7
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-Cccc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLD----EVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRS 424 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~----gi~p--d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~P-d~~t 424 (796)
+.+-..|...|++++|.+.|++.... +-.| ...++..+-..+...|++++|...+++.... +-.. -..+
T Consensus 70 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 149 (203)
T 3gw4_A 70 HQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA 149 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 55666778888999999888876542 2111 2456788888999999999999999887643 2111 1233
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 425 YGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 425 y~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
+..+-..+...|+.++|.+.+++..+
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56677788889999999998877543
No 136
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.18 E-value=0.09 Score=47.34 Aligned_cols=96 Identities=7% Similarity=-0.076 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~ 468 (796)
.+..+=..|.+.|++++|.+.|++..+.. .-+...|..+-.+|.+.|+.++|.+.|+...+.. ..+...|..+-.+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 45556678899999999999999987652 2356778888889999999999999999988754 235778899999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 003768 469 EAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 469 ~~G~~~~A~~ll~~M~~~ 486 (796)
..|++++|...|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999998875
No 137
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.08 E-value=0.15 Score=50.19 Aligned_cols=115 Identities=8% Similarity=-0.043 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCC-CCcccHHHHHHHHHH----cCC
Q 003768 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGIN-PRLRSYGPALSVFCN----NGD 437 (796)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~----~g~~~~A~~l~~~M~~~gi~-Pd~~ty~~LI~~~~~----~G~ 437 (796)
+.++|++.|++..+.| +..++..|-..|.. .++.++|+..|++..+.|.. -+...+..|=..|.. .++
T Consensus 68 ~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d 144 (212)
T 3rjv_A 68 DYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED 144 (212)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC
Confidence 5556666665555544 44555555555554 55666666666655444321 013444444444544 455
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHhC
Q 003768 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEA-G-----KGDRVYYLLHKLRTS 486 (796)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~-G-----~~~~A~~ll~~M~~~ 486 (796)
.++|.+.|+...+.+ .+...+..|-..|... | +.++|...|+.-.+.
T Consensus 145 ~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 145 DVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 666666666655541 2333444444444332 2 556666666665555
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.08 E-value=0.14 Score=46.96 Aligned_cols=97 Identities=10% Similarity=-0.025 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003768 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (796)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~ 467 (796)
..|..+...+...|++++|...|++..+.. ..+...|..+-..+...|+.++|.+.++...+.. ..+...|..+-..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 467778888999999999999999987652 2356778888888999999999999999988754 23577888888999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 003768 468 VEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 468 ~~~G~~~~A~~ll~~M~~~ 486 (796)
...|+.++|...|++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh
Confidence 9999999999999998876
No 139
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.05 E-value=0.034 Score=53.96 Aligned_cols=119 Identities=8% Similarity=-0.081 Sum_probs=83.5
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCC-CC---C-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEV-PM---N-----------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi-~p---d-----------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P 420 (796)
..+-..+.+.|++++|.+.|++.....- .| . ..+|..+..+|.+.|++++|...++...+.. ..
T Consensus 42 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~ 120 (198)
T 2fbn_A 42 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KN 120 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cc
Confidence 4455667788999999999998876421 11 1 2678888888889999999999988877652 23
Q ss_pred CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHH
Q 003768 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVY 477 (796)
Q Consensus 421 d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~ 477 (796)
+...|..+-.+|...|+.++|.+.|+...+.. | +...+..+-..+...++.+++.
T Consensus 121 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 121 NVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778888889999988888877643 4 4455566655555555555444
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.09 Score=46.54 Aligned_cols=90 Identities=10% Similarity=0.007 Sum_probs=53.5
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCh
Q 003768 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (796)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~ 438 (796)
-..+.+.|++++|.+.|++..... +.+...|..+..+|.+.|++++|...+++..+.. .-+...|..+-..+...|+.
T Consensus 11 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~ 88 (126)
T 3upv_A 11 GKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEY 88 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCH
Confidence 344556667777777776665542 2345666666666666777777776666665542 11234455555566666666
Q ss_pred HHHHHHHHHHHh
Q 003768 439 DKACSVEEHMLE 450 (796)
Q Consensus 439 ~~A~~l~~~M~~ 450 (796)
++|.+.|+...+
T Consensus 89 ~~A~~~~~~al~ 100 (126)
T 3upv_A 89 ASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
No 141
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.04 E-value=0.019 Score=52.24 Aligned_cols=130 Identities=14% Similarity=-0.015 Sum_probs=96.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CcccH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEV-PMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSY 425 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~P-d~~ty 425 (796)
..+-..|...|++++|.+.|++.....- .++ ..++..+...+...|++++|...+++.... +-.+ ....+
T Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 92 (164)
T 3ro3_A 13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 92 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 5566778889999999999988765311 112 247888999999999999999999987643 1111 14466
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 426 GPALSVFCNNGDVDKACSVEEHMLEH----GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 426 ~~LI~~~~~~G~~~~A~~l~~~M~~~----gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
..+-..+...|+.++|.+.+++..+. +-.+ ....+..+-..+...|+.++|...+++..+
T Consensus 93 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 67777888999999999999887643 2111 134677788888999999999999987654
No 142
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.04 E-value=0.017 Score=68.33 Aligned_cols=173 Identities=9% Similarity=-0.045 Sum_probs=124.7
Q ss_pred CCCChhhHHHHHhhhccCchhhhc-----c-CCCC-CcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcc
Q 003768 248 KSGSGMRTLDTFEVSTMNSTELGD-----S-RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (796)
Q Consensus 248 k~G~~~~A~~vf~~~~~~s~em~~-----~-~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ 320 (796)
..|+.++|.+.+. +... . ..-+ +...|..+-.. +.+.|++++|...|++..+.. |+..
T Consensus 403 ~~~~~~~A~~~~~-------~al~~~~~~~~~~~p~~~~~~~~~a~~------~~~~g~~~~A~~~~~~al~~~--p~~~ 467 (681)
T 2pzi_A 403 VLSQPVQTLDSLR-------AARHGALDADGVDFSESVELPLMEVRA------LLDLGDVAKATRKLDDLAERV--GWRW 467 (681)
T ss_dssp TTCCHHHHHHHHH-------HHHTC-------CCTTCSHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHH--CCCH
T ss_pred cccCHHHHHHHHH-------HhhhhcccccccccccchhHHHHHHHH------HHhcCCHHHHHHHHHHHhccC--cchH
Confidence 6788999999985 3330 0 0112 44456666666 889999999999999887652 3221
Q ss_pred eeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003768 321 MKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM 400 (796)
Q Consensus 321 ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~ 400 (796)
..| ..+-..|.+.|++++|.+.|++..+.. +-+...|..+-.+|.+.
T Consensus 468 ---------------------~a~-----------~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~ 514 (681)
T 2pzi_A 468 ---------------------RLV-----------WYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELA 514 (681)
T ss_dssp ---------------------HHH-----------HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHH
T ss_pred ---------------------HHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 111 555567889999999999999988754 33677889999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 003768 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGK 472 (796)
Q Consensus 401 g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd-~~ty~~LI~~~~~~G~ 472 (796)
|++++ ...|++..+.. .-+...|..+-..+.+.|+.++|.+.|+...+. .|+ ...|..+..++...|.
T Consensus 515 g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 515 GNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred CChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 99999 99999887652 124567788888999999999999999987764 376 4556666666655444
No 143
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.03 E-value=0.16 Score=50.04 Aligned_cols=122 Identities=10% Similarity=0.011 Sum_probs=98.8
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----DGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g----~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~ 431 (796)
..+=..|...+++++|++.|++..+.| +...+..|-..|.. + +.++|...|++..+.| +...+..|=..
T Consensus 22 ~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~ 94 (212)
T 3rjv_A 22 YYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARV 94 (212)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 445556677899999999999999887 67788888888887 6 8999999999988775 34455555556
Q ss_pred HHH----cCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh----cCChhHHHHHHHHHHhC
Q 003768 432 FCN----NGDVDKACSVEEHMLEHGVYPE---EPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 432 ~~~----~G~~~~A~~l~~~M~~~gv~pd---~~ty~~LI~~~~~----~G~~~~A~~ll~~M~~~ 486 (796)
|.. .++.++|.+.|+...+.| |. ...+..|=..|.. .++.++|..+|++-.+.
T Consensus 95 y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 95 LVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 665 789999999999998876 43 6777788888877 78899999999998776
No 144
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.03 E-value=0.26 Score=48.25 Aligned_cols=130 Identities=13% Similarity=0.030 Sum_probs=87.0
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+.+.|++++|...|++..+.. |+... .| ..+-..|...|++++|.+
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~--p~~~~---------------------~~-----------~~lg~~~~~~g~~~~A~~ 109 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKA--PNNVD---------------------CL-----------EACAEMQVCRGQEKDALR 109 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHH---------------------HH-----------HHHHHHHHHHTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CCCHH---------------------HH-----------HHHHHHHHHcCCHHHHHH
Confidence 778888999998888877653 33221 12 667778889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCccc--HHHHHHHHHHcCChHHHHHHHHHHH
Q 003768 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGD--GDMAFDMVKRMKSLGINPRLRS--YGPALSVFCNNGDVDKACSVEEHML 449 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~--~~~A~~l~~~M~~~gi~Pd~~t--y~~LI~~~~~~G~~~~A~~l~~~M~ 449 (796)
.|++..+.. +-+..+|..+-..|...|+ .+.+...++... .|+... +..+=.++...|+.++|...|+...
T Consensus 110 ~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 110 MYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999988754 3467788888888876654 334455554432 343322 2223334556789999999999988
Q ss_pred hCCCCCCHHHHHHHH
Q 003768 450 EHGVYPEEPELEALL 464 (796)
Q Consensus 450 ~~gv~pd~~ty~~LI 464 (796)
+. .|+......|.
T Consensus 185 ~l--~P~~~~~~~l~ 197 (208)
T 3urz_A 185 LR--FPSTEAQKTLD 197 (208)
T ss_dssp TT--SCCHHHHHHHH
T ss_pred Hh--CCCHHHHHHHH
Confidence 74 48866554443
No 145
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.01 E-value=0.062 Score=55.92 Aligned_cols=120 Identities=6% Similarity=-0.062 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003768 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (796)
Q Consensus 385 pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (796)
.+...+-.+...+...|++++|..+|++.... .| +...+..+-..+.+.|+.++|.++++...... |+.......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 34456666777777888888888888877654 24 34566667777778888888888887776543 554433332
Q ss_pred HH-HHHhcCChhHHHHHHHHHHhCCCCCC-hh-HHHHHHHHHhchHHHHh
Q 003768 464 LR-VSVEAGKGDRVYYLLHKLRTSVRKVS-PS-TADVIAKWFNSKEAARL 510 (796)
Q Consensus 464 I~-~~~~~G~~~~A~~ll~~M~~~~~~~~-p~-t~~~I~~~~~~~~~~~a 510 (796)
.. .+...++.++|...|++.... .|. +. .++.-..+...+...+|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A 238 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEA 238 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHH
Confidence 22 245667777777777777665 332 22 23334444445444444
No 146
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.99 E-value=0.1 Score=46.90 Aligned_cols=94 Identities=10% Similarity=-0.034 Sum_probs=79.0
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~ 431 (796)
..+-..+.+.|++++|.+.|++.... .|+ ...|..+...|...|++++|...+++..+.. ..+...|..+-..
T Consensus 32 ~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 108 (148)
T 2dba_A 32 RKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHH
Confidence 55667788999999999999998875 466 6788999999999999999999999987652 2245677778888
Q ss_pred HHHcCChHHHHHHHHHHHhCC
Q 003768 432 FCNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 432 ~~~~G~~~~A~~l~~~M~~~g 452 (796)
|...|+.++|...|+...+..
T Consensus 109 ~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999988753
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.98 E-value=0.025 Score=52.64 Aligned_cols=99 Identities=11% Similarity=-0.087 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~ 465 (796)
+...+..+...+...|++++|...|+...... ..+...|..+-.+|...|+.++|.+.|+...+.. .-+...|..+-.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 44566777888889999999999998877652 2245566667778888999999999999887754 124567777888
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 003768 466 VSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 466 ~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+|...|+.++|...|++....
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 889999999999999887765
No 148
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.95 E-value=0.066 Score=47.81 Aligned_cols=94 Identities=10% Similarity=0.001 Sum_probs=79.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+-..+.+.|++++|...|+...... +.+...|..+..++...|++++|...+++..+.. .-+...|..+-..|...
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 90 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEM 90 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHH
Confidence 556677889999999999999987754 3467899999999999999999999999988763 22466788888899999
Q ss_pred CChHHHHHHHHHHHhC
Q 003768 436 GDVDKACSVEEHMLEH 451 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~ 451 (796)
|+.++|...|+...+.
T Consensus 91 ~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 91 ESYDEAIANLQRAYSL 106 (137)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999999987753
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=95.94 E-value=0.073 Score=49.74 Aligned_cols=99 Identities=13% Similarity=0.045 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~ 465 (796)
+...|..+-..+.+.|++++|...|++..+.. .-+...|..+-..|.+.|+.++|...|+...+.. .-+...|..+-.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34566667777777888888888887776542 1245566667777777888888888887777654 124667777777
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 003768 466 VSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 466 ~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|...|++++|...|++....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 788888888888888877665
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.094 Score=46.40 Aligned_cols=98 Identities=11% Similarity=0.009 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~ 466 (796)
...|..+-..+.+.|++++|...|++..+.. ..+...|..+-.+|.+.|+.++|...++...+.. .-+...|..+-.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456777788999999999999999987752 2356778888889999999999999999988754 2246788889999
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 003768 467 SVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 467 ~~~~G~~~~A~~ll~~M~~~ 486 (796)
+...|++++|...|++....
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999998775
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.91 E-value=0.078 Score=48.40 Aligned_cols=91 Identities=13% Similarity=-0.058 Sum_probs=39.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003768 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (796)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~ 472 (796)
+...+.+.|++++|...|+...... ..+...|..+-..|.+.|+.++|...|+...... .-+...|..+-.+|...|+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3344444444444444444443321 1122333333344444455555555544444432 1122334444444455555
Q ss_pred hhHHHHHHHHHHh
Q 003768 473 GDRVYYLLHKLRT 485 (796)
Q Consensus 473 ~~~A~~ll~~M~~ 485 (796)
+++|...|+....
T Consensus 102 ~~~A~~~~~~al~ 114 (142)
T 2xcb_A 102 LDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.85 E-value=0.068 Score=48.14 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=24.5
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003768 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMK 414 (796)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~ 414 (796)
+.+.|++++|++.|++..+.. +-+..+|+.+-.+|.+.|++++|++.+++..
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 444455555555555444321 2234444455555555555555555554443
No 153
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.85 E-value=0.059 Score=56.31 Aligned_cols=128 Identities=12% Similarity=-0.076 Sum_probs=97.0
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc----ccHHHHHHHH
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----RSYGPALSVF 432 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~----~ty~~LI~~~ 432 (796)
.....+...|++++|.++|+.+...+ |+....-.+-..+.+.+++++|+..|+..... |+. ..+..+=.++
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccHHHHHHHHHHHH
Confidence 35667888999999999999988754 65546666667899999999999999844332 221 2344455678
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 003768 433 CNNGDVDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS 491 (796)
Q Consensus 433 ~~~G~~~~A~~l~~~M~~~gv~pd--~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~ 491 (796)
...|+.++|+..|++.......|. ......+-.++.+.|+.++|..+|+++... .|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~ 240 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE 240 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 899999999999999885444354 234555666778999999999999999987 555
No 154
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.82 E-value=0.091 Score=48.73 Aligned_cols=94 Identities=13% Similarity=0.102 Sum_probs=78.8
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+-..+.+.|++++|...|+...... +.+...|..+-.+|...|++++|...|++..... .-+...|..+-.+|...
T Consensus 25 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 25 YSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 445667888999999999999988754 4478889999999999999999999999987753 23456777788899999
Q ss_pred CChHHHHHHHHHHHhC
Q 003768 436 GDVDKACSVEEHMLEH 451 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~ 451 (796)
|+.++|.+.|+...+.
T Consensus 103 g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 103 GELAEAESGLFLAQEL 118 (148)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988764
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.80 E-value=0.086 Score=48.13 Aligned_cols=92 Identities=14% Similarity=0.047 Sum_probs=76.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~ 437 (796)
+-..+.+.|++++|.+.|+...... +.+...|..+-.+|...|++++|...|+...... .-+...|..+-.+|...|+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3456778899999999999988754 4478889999999999999999999999988763 2345667778888999999
Q ss_pred hHHHHHHHHHHHhC
Q 003768 438 VDKACSVEEHMLEH 451 (796)
Q Consensus 438 ~~~A~~l~~~M~~~ 451 (796)
.++|.+.|+...+.
T Consensus 102 ~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 102 LDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=95.79 E-value=0.14 Score=47.84 Aligned_cols=94 Identities=11% Similarity=0.079 Sum_probs=80.0
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+-..+.+.|++++|.+.|++..... +-+...|..+..+|.+.|++++|...|++..+.. .-+...|..+-..|...
T Consensus 15 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 15 KSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 556677889999999999999988754 3478899999999999999999999999988763 22467788888899999
Q ss_pred CChHHHHHHHHHHHhC
Q 003768 436 GDVDKACSVEEHMLEH 451 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~ 451 (796)
|+.++|.+.|+...+.
T Consensus 93 g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIEA 108 (164)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999988764
No 157
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=95.76 E-value=0.38 Score=53.49 Aligned_cols=120 Identities=13% Similarity=0.054 Sum_probs=81.9
Q ss_pred hhHHHHHHhcc---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCcccHHHH
Q 003768 356 EIRLSEDAKKY---AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM----GDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (796)
Q Consensus 356 n~lI~~~~k~g---~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~----g~~~~A~~l~~~M~~~gi~Pd~~ty~~L 428 (796)
..+-..|.+.| +.++|++.|+...+.| .++...+..|-..|... ++.++|...|+... .|. ...+..|
T Consensus 180 ~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~---~~a~~~L 254 (452)
T 3e4b_A 180 VELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGY---PASWVSL 254 (452)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGS---THHHHHH
T ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCC---HHHHHHH
Confidence 55556666677 8888888888888877 44555555666666554 68888888888876 332 3333333
Q ss_pred HHH-H--HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHH
Q 003768 429 LSV-F--CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG-----KGDRVYYLLHKLR 484 (796)
Q Consensus 429 I~~-~--~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G-----~~~~A~~ll~~M~ 484 (796)
=.. | ...++.++|.+.|+...+.| +...+..|=..|. .| +.++|...|.+-.
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 333 2 34788889999888888776 5666666666665 45 7888888887765
No 158
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=95.69 E-value=0.034 Score=52.94 Aligned_cols=127 Identities=9% Similarity=0.067 Sum_probs=94.6
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHH--HHH
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV--FCN 434 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~--~~~ 434 (796)
..-..+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...++..... .|+.. +..+... +..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHHHHh
Confidence 34556788999999999999876542 336788999999999999999999999886543 34332 3333221 223
Q ss_pred cCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 003768 435 NGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS 491 (796)
Q Consensus 435 ~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~ 491 (796)
.+....|...++...+.. | +...+..+-..+...|+.++|...|+++.+. .|.
T Consensus 87 ~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~ 140 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKV--NLG 140 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTT
T ss_pred hcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--Ccc
Confidence 233445788888887643 6 4788888999999999999999999999887 554
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.61 E-value=0.11 Score=46.76 Aligned_cols=108 Identities=12% Similarity=0.134 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCC----HHHH
Q 003768 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPE----EPEL 460 (796)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~g--v~pd----~~ty 460 (796)
.++..|=..+.+.|++++|...|++..+. .|+ ...|+.+=.+|.+.|+.++|.+.++...+.. ..++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45666778899999999999999998765 344 5677778889999999999999999877532 1222 2467
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 003768 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIA 499 (796)
Q Consensus 461 ~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~I~ 499 (796)
..|=..+...|++++|.+.|++-... .+.|++...|.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l~ 123 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKVK 123 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHHH
Confidence 77778899999999999999998776 67777655544
No 160
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.51 Score=51.11 Aligned_cols=122 Identities=7% Similarity=-0.002 Sum_probs=83.6
Q ss_pred hccCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CC--CC-CcccHHHHHHHHH
Q 003768 364 KKYAFQRGFEIYEKMCL----DEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GI--NP-RLRSYGPALSVFC 433 (796)
Q Consensus 364 k~g~~~~A~~lf~~M~~----~gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~--gi--~P-d~~ty~~LI~~~~ 433 (796)
..|..+.|.+++.+... .+..+. ..++..|...|...|++++|..++++.... +. .| ...+|..++..|.
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 34677778777776543 333333 457778889999999999999998887543 11 11 1346777888888
Q ss_pred HcCChHHHHHHHHHHHhC--CCC-C-C--HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 434 NNGDVDKACSVEEHMLEH--GVY-P-E--EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~--gv~-p-d--~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
..|++++|..+++..... .+. | . ...|..+...+...|++++|...|.+..+
T Consensus 187 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 187 KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999998776532 121 2 1 24556666667788899998888776643
No 161
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=95.51 E-value=0.018 Score=50.87 Aligned_cols=86 Identities=10% Similarity=-0.035 Sum_probs=56.2
Q ss_pred ccCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHH
Q 003768 365 KYAFQRGFEIYEKMCLDE--VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (796)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g--i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~ 442 (796)
.|++++|...|++....+ -+-+..+|..+-..|...|++++|...|++..+.. .-+...|..+-.++.+.|+.++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466777788887777654 12245567777777888888888888888776652 123455666667777778888888
Q ss_pred HHHHHHHhC
Q 003768 443 SVEEHMLEH 451 (796)
Q Consensus 443 ~l~~~M~~~ 451 (796)
+.++...+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 877776654
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.44 E-value=0.21 Score=43.92 Aligned_cols=96 Identities=9% Similarity=-0.026 Sum_probs=75.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----cccHHHHHH
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALS 430 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd----~~ty~~LI~ 430 (796)
+-..+.+.|++++|.+.|+......- .+. ..+..+..++.+.|++++|...|+...+.. |+ ...+..+-.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 44567789999999999999887531 122 477778889999999999999999988753 44 345666778
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 003768 431 VFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (796)
Q Consensus 431 ~~~~~G~~~~A~~l~~~M~~~gv~pd~~ 458 (796)
.+...|+.++|...|+...+.. |+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~--p~~~ 110 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY--PGSD 110 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTSH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCCh
Confidence 8899999999999999988754 5543
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.16 Score=55.18 Aligned_cols=168 Identities=6% Similarity=-0.142 Sum_probs=114.5
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceec-------cchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhcc
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKL-------NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~-------~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g 366 (796)
+.+.|++++|.+.|.+..+..-........ ....++|+ ..+...|.+.|
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al------------------------~~l~~~y~~~~ 69 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSI------------------------LELGQLYVTMG 69 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHH------------------------HHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHH------------------------HHHHHHHHHCC
Confidence 567789999999999988764222221111 11112222 66888999999
Q ss_pred CHHHHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC-cccHHHHHHHHHHcC
Q 003768 367 AFQRGFEIYEKMCLD-EVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKS----LGINPR-LRSYGPALSVFCNNG 436 (796)
Q Consensus 367 ~~~~A~~lf~~M~~~-gi~pd~----~ty~~LI~~~~~~g~~~~A~~l~~~M~~----~gi~Pd-~~ty~~LI~~~~~~G 436 (796)
++++|.+++..+... +..++. .+.+.+-..+...|+.++|..++.+... .+..+. ..++..|...|...|
T Consensus 70 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 149 (434)
T 4b4t_Q 70 AKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK 149 (434)
T ss_dssp CHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc
Confidence 999999999887652 111222 1223333333457889999999987653 233222 456777888999999
Q ss_pred ChHHHHHHHHHHHhC--CC--CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003768 437 DVDKACSVEEHMLEH--GV--YP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~--gv--~p-d~~ty~~LI~~~~~~G~~~~A~~ll~~M~~ 485 (796)
+.++|..++++.... +. .+ ....|..++..|...|++++|..++++...
T Consensus 150 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 150 QYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 999999999887643 21 12 245788899999999999999999987654
No 164
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.39 E-value=0.28 Score=57.78 Aligned_cols=99 Identities=8% Similarity=0.040 Sum_probs=75.2
Q ss_pred cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CcccHHHHHHHHHHcCChHHHHH
Q 003768 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP--RLRSYGPALSVFCNNGDVDKACS 443 (796)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P--d~~ty~~LI~~~~~~G~~~~A~~ 443 (796)
++.+.|..+|+...+. .+-+...|...++.....|+.+.|..+|+........+ ....|...+..-.+.|+.+.+..
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4589999999988875 34466677888888888999999999999876653211 34578888888888999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH
Q 003768 444 VEEHMLEHGVYPEEPELEALLRVS 467 (796)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~LI~~~ 467 (796)
+.+.|.+.- |+......+++-|
T Consensus 563 v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 563 LEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHS--TTCCHHHHHHHHT
T ss_pred HHHHHHHhC--CCCcHHHHHHHHh
Confidence 999998864 6655545554444
No 165
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=95.26 E-value=1.4 Score=46.46 Aligned_cols=219 Identities=10% Similarity=-0.007 Sum_probs=144.5
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccccCCcccCCCC--ChhhHHHHHhhhccCchhhhccCCCCCcchhh
Q 003768 206 DVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAVGVVKPAKSG--SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLD 282 (796)
Q Consensus 206 ~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~a~~~~~~~~~~~~k~G--~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn 282 (796)
.-++|+++++.+.... |+ ...||.-=..+. ..| .+++++..++ .+... .-.+...|+
T Consensus 48 ~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~----------~l~~~~~~eeL~~~~-------~~L~~-nPk~y~aW~ 107 (306)
T 3dra_A 48 YSERALHITELGINEL--ASHYTIWIYRFNILK----------NLPNRNLYDELDWCE-------EIALD-NEKNYQIWN 107 (306)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH----------TCTTSCHHHHHHHHH-------HHHHH-CTTCCHHHH
T ss_pred CCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHH----------HcccccHHHHHHHHH-------HHHHH-CcccHHHHH
Confidence 3468999999998653 43 445665555555 455 8999999985 33321 112333454
Q ss_pred hcccCccccccc----ccc---CChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccch
Q 003768 283 YGSSPMIDKLES----NSS---YRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDAD 355 (796)
Q Consensus 283 ~LI~~~~~~~~~----~~~---g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~ 355 (796)
.--.. + ... +++++++.+++.+.+.. .-.| +.|
T Consensus 108 ~R~~i------L~~~~~~l~~~~~~~~EL~~~~~~l~~~----pkny----------------------~aW-------- 147 (306)
T 3dra_A 108 YRQLI------IGQIMELNNNDFDPYREFDILEAMLSSD----PKNH----------------------HVW-------- 147 (306)
T ss_dssp HHHHH------HHHHHHHTTTCCCTHHHHHHHHHHHHHC----TTCH----------------------HHH--------
T ss_pred HHHHH------HHHHHHhccccCCHHHHHHHHHHHHHhC----CCCH----------------------HHH--------
Confidence 43332 2 222 67888888888887752 1111 111
Q ss_pred hhHHHHHHhccCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHCCCCCCcccHHH
Q 003768 356 EIRLSEDAKKYAFQ--RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD------GDMAFDMVKRMKSLGINPRLRSYGP 427 (796)
Q Consensus 356 n~lI~~~~k~g~~~--~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~------~~~A~~l~~~M~~~gi~Pd~~ty~~ 427 (796)
+----.+.+.|.++ ++++.+++|.+.. +-|-..|+----.+.+.+. ++++++.++.+..... -|...|+-
T Consensus 148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y 225 (306)
T 3dra_A 148 SYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNY 225 (306)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHH
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHH
Confidence 11112223345555 8999999999865 4577888877767777776 8899999988877632 46677777
Q ss_pred HHHHHHHcCChHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 428 ALSVFCNNGDVDK-ACSVEEHMLEHG--VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 428 LI~~~~~~G~~~~-A~~l~~~M~~~g--v~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+-..+.+.|.... +.++.....+.+ -..+...+..|.+.|.+.|+.++|.++++.+.+.
T Consensus 226 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 226 LLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 7777777777444 445666554432 1357788999999999999999999999999874
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=95.21 E-value=0.071 Score=60.09 Aligned_cols=118 Identities=12% Similarity=0.037 Sum_probs=89.6
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChH
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~ 439 (796)
..+.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|...+++..+.. .-+...|..+-.+|.+.|+.+
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34567899999999999888753 3458899999999999999999999999988762 234567788888999999999
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHH--HHhcCChhHHHHHHH
Q 003768 440 KACSVEEHMLEHGVYPE-EPELEALLRV--SVEAGKGDRVYYLLH 481 (796)
Q Consensus 440 ~A~~l~~~M~~~gv~pd-~~ty~~LI~~--~~~~G~~~~A~~ll~ 481 (796)
+|.+.|++..+.. |+ ...+..+-.+ +.+.|++++|.++++
T Consensus 92 eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999988753 32 2334444333 788899999999887
No 167
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.12 E-value=0.1 Score=55.71 Aligned_cols=142 Identities=11% Similarity=-0.013 Sum_probs=99.4
Q ss_pred hhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHH
Q 003768 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (796)
Q Consensus 280 tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI 359 (796)
.|..+-.. +.+.|++++|...|++..... |+...+......+.... ....| ..+-
T Consensus 149 ~~~~~g~~------~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~------~~~~~-----------~nla 203 (336)
T 1p5q_A 149 IVKERGTV------YFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQAL------RLASH-----------LNLA 203 (336)
T ss_dssp HHHHHHHH------HHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHH------HHHHH-----------HHHH
T ss_pred HHHHHHHH------HHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHH------HHHHH-----------HHHH
Confidence 35555555 888999999999999887653 33211100000000000 01122 6677
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCCh
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDV 438 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~ 438 (796)
..|.+.|++++|.+.|++..... +.+..+|..+-.+|...|++++|...|++..+. .| +...+..+-..+.+.|+.
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHH
Confidence 78899999999999999988764 447889999999999999999999999998775 34 455677777788888888
Q ss_pred HHH-HHHHHHHH
Q 003768 439 DKA-CSVEEHML 449 (796)
Q Consensus 439 ~~A-~~l~~~M~ 449 (796)
++| ..+|..|.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888 44666554
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.09 E-value=0.11 Score=46.23 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=61.7
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCC
Q 003768 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGD 437 (796)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~ 437 (796)
-..+.+.|++++|...|++..... +-+...|..+-.++...|+.++|...|++..+. .| +...+..+-..|...|+
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 345667778888888887777643 336667777777777888888888888776654 23 34455566667777777
Q ss_pred hHHHHHHHHHHHh
Q 003768 438 VDKACSVEEHMLE 450 (796)
Q Consensus 438 ~~~A~~l~~~M~~ 450 (796)
.++|...++...+
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777665
No 169
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=94.95 E-value=0.63 Score=51.71 Aligned_cols=226 Identities=8% Similarity=-0.042 Sum_probs=132.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCC---ChhhHHHHHhhhccCchhh
Q 003768 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG---SGMRTLDTFEVSTMNSTEL 269 (796)
Q Consensus 193 tyn~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G---~~~~A~~vf~~~~~~s~em 269 (796)
.+..|-..|...+.++++........+.-...+...+..|=..|. +.| +.++|...|. ..
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~----------~~g~~~~~~~A~~~~~-------~a 205 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQ----------KKQQPEQQAELLKQME-------AG 205 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHH----------HTTCHHHHHHHHHHHH-------HH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHH----------HcCCcccHHHHHHHHH-------HH
Confidence 444455555566644444444333332222222335666666666 456 7778888874 33
Q ss_pred hccCCCCCcchhhhcccCccccccccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCccccccccc
Q 003768 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (796)
Q Consensus 270 ~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~ 349 (796)
.+. |-.+...+..|-.. +.......+++++|...|+... .|. ...+
T Consensus 206 a~~-g~~~a~~~~~Lg~~--y~~g~~~~~d~~~A~~~~~~aa-~g~---~~a~--------------------------- 251 (452)
T 3e4b_A 206 VSR-GTVTAQRVDSVARV--LGDATLGTPDEKTAQALLEKIA-PGY---PASW--------------------------- 251 (452)
T ss_dssp HHT-TCSCHHHHHHHHHH--HTCGGGSSCCHHHHHHHHHHHG-GGS---THHH---------------------------
T ss_pred HHC-CCHHHHHHHHHHHH--HhCCCCCCCCHHHHHHHHHHHc-CCC---HHHH---------------------------
Confidence 322 22222211222111 0000333467888888888765 331 1111
Q ss_pred ccccchhhHHHH-H--HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCCC
Q 003768 350 DNQDADEIRLSE-D--AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG-----DGDMAFDMVKRMKSLGINPR 421 (796)
Q Consensus 350 ~~~~~~n~lI~~-~--~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g-----~~~~A~~l~~~M~~~gi~Pd 421 (796)
..+=.. | ...++.++|++.|++..+.| +...+..|-..|. .| +.++|...|++.. .| +
T Consensus 252 ------~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~ 317 (452)
T 3e4b_A 252 ------VSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---E 317 (452)
T ss_dssp ------HHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---C
T ss_pred ------HHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---C
Confidence 222222 2 34789999999999999887 6778888888887 55 9999999998765 32 3
Q ss_pred cccHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhC
Q 003768 422 LRSYGPALSVFCN----NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 422 ~~ty~~LI~~~~~----~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~----~G~~~~A~~ll~~M~~~ 486 (796)
...+..|=..|.. ..+.++|...|+.-.+.|. ......|-..|.. ..+.++|...|..-.+.
T Consensus 318 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 318 VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 4444444444444 2399999999999888774 2333444444442 44778888888888776
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.76 E-value=0.21 Score=44.37 Aligned_cols=93 Identities=13% Similarity=0.005 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 003768 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVS 467 (796)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~ 467 (796)
+-.+...+.+.|++++|...|++..+. .| +...|..+=..+...|+.++|...|+...+.. | +...+..|-..|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 344566788999999999999998875 34 55666667778889999999999999988754 5 567788888999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 003768 468 VEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 468 ~~~G~~~~A~~ll~~M~~~ 486 (796)
...|+.++|...|++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998765
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=94.70 E-value=0.21 Score=56.22 Aligned_cols=115 Identities=7% Similarity=-0.003 Sum_probs=86.8
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCc-ceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~-~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~ 372 (796)
+.+.|++++|...|++..+. .|+. ..| ..+-..|.+.|++++|.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~---------------------------------~~lg~~~~~~g~~~~A~ 60 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYY---------------------------------GNRSLAYLRTECYGYAL 60 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHH---------------------------------HHHHHHHHHTTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHH---------------------------------HHHHHHHHHhcCHHHHH
Confidence 78899999999999988765 2332 222 67778899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cccHHHHHHH--HHHcCChHHHHHHHH
Q 003768 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSV--FCNNGDVDKACSVEE 446 (796)
Q Consensus 373 ~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~--~~~~G~~~~A~~l~~ 446 (796)
+.|++..+.. +-+..+|..+-.+|.+.|++++|.+.|++..+. .|+ ...+..+-.+ +.+.|+.++|.++++
T Consensus 61 ~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 61 GDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999998864 346789999999999999999999999998765 233 3344444444 788899999999988
No 172
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=94.48 E-value=0.054 Score=49.07 Aligned_cols=128 Identities=15% Similarity=0.040 Sum_probs=89.7
Q ss_pred ccccCChHHHHHHHHHHHHcCCC-CCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~-Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~ 372 (796)
+...|++++|...+++..+..-. ++. ...+ .++ ..+-..|...|++++|.
T Consensus 19 ~~~~~~~~~A~~~~~~al~~~~~~~~~-------~~~~-----------~~~-----------~~l~~~~~~~g~~~~A~ 69 (164)
T 3ro3_A 19 HYLLGNFRDAVIAHEQRLLIAKEFGDK-------AAER-----------IAY-----------SNLGNAYIFLGEFETAS 69 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCH-------HHHH-----------HHH-----------HHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHhCCc-------hHHH-----------HHH-----------HHHHHHHHHcCCHHHHH
Confidence 77889999999999877653100 000 0000 112 66777888999999999
Q ss_pred HHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CcccHHHHHHHHHHcCChHHHH
Q 003768 373 EIYEKMCLD----EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSYGPALSVFCNNGDVDKAC 442 (796)
Q Consensus 373 ~lf~~M~~~----gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----gi~P-d~~ty~~LI~~~~~~G~~~~A~ 442 (796)
+.|++.... +-.+ ...++..+...+...|++++|...+++..+. +-.+ ....+..+-..+...|+.++|.
T Consensus 70 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 149 (164)
T 3ro3_A 70 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 149 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHH
Confidence 999987642 1111 1457888889999999999999999887643 2111 1345667778888999999999
Q ss_pred HHHHHHHh
Q 003768 443 SVEEHMLE 450 (796)
Q Consensus 443 ~l~~~M~~ 450 (796)
+.+++..+
T Consensus 150 ~~~~~a~~ 157 (164)
T 3ro3_A 150 HFAEKHLE 157 (164)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
No 173
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=94.42 E-value=0.12 Score=58.43 Aligned_cols=126 Identities=11% Similarity=0.053 Sum_probs=89.4
Q ss_pred HHHhccCHHHHHHHHHHHHhC---CCC---CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCC-cccHH
Q 003768 361 EDAKKYAFQRGFEIYEKMCLD---EVP---MN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPR-LRSYG 426 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~---gi~---pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----g-i~Pd-~~ty~ 426 (796)
.+-..|++++|..++++..+. -+. |+ ..+++.|..+|...|++++|..++++.... | -.|+ ..+|+
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456788999999999876642 122 22 457899999999999999999999876532 2 1233 46788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh-----CCCC-CCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 427 PALSVFCNNGDVDKACSVEEHMLE-----HGVY-PEE-PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 427 ~LI~~~~~~G~~~~A~~l~~~M~~-----~gv~-pd~-~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|-..|...|+.++|..++++..+ .|-. |+. .+.+.|-.++...+.+++|..++.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999998887643 2411 222 23345555566778888999999888764
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=94.34 E-value=0.058 Score=47.47 Aligned_cols=87 Identities=17% Similarity=0.072 Sum_probs=67.8
Q ss_pred hcCChHHHHHHHHHHHHCCC--CCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 003768 399 SMGDGDMAFDMVKRMKSLGI--NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (796)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~gi--~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A 476 (796)
..|++++|...|++..+.+. .-+...|..+-..|...|+.++|.+.|+...+.. .-+...+..+-.++.+.|+.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 46889999999999887641 2235677778888999999999999999998864 12467788888999999999999
Q ss_pred HHHHHHHHhC
Q 003768 477 YYLLHKLRTS 486 (796)
Q Consensus 477 ~~ll~~M~~~ 486 (796)
...|.+....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988766
No 175
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.08 E-value=0.5 Score=48.77 Aligned_cols=90 Identities=10% Similarity=0.015 Sum_probs=60.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNG 436 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G 436 (796)
+-..+.+.|++++|.+.|++..... +-+...|..+..+|.+.|++++|...+++..+. .| +...|..+-.+|...|
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 10 QGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQLEME 86 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 4455667777777777777766542 236667777777777777777777777766543 33 3455666666777777
Q ss_pred ChHHHHHHHHHHHh
Q 003768 437 DVDKACSVEEHMLE 450 (796)
Q Consensus 437 ~~~~A~~l~~~M~~ 450 (796)
+.++|...|+...+
T Consensus 87 ~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 87 SYDEAIANLQRAYS 100 (281)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777776654
No 176
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=94.07 E-value=0.28 Score=45.55 Aligned_cols=93 Identities=11% Similarity=0.036 Sum_probs=55.3
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhC-------CC----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLD-------EV----------PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~-------gi----------~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~ 419 (796)
..=..+.+.|++++|.+.|.+.... .- +.+...|..+..+|.+.|++++|...++...+.. .
T Consensus 16 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p 94 (162)
T 3rkv_A 16 QKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-E 94 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-C
Confidence 3445677889999999999876653 10 1123456666666666666666666666655442 1
Q ss_pred CCcccHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 420 Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
-+...|..+-.+|...|+.++|...|+...+
T Consensus 95 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 95 TNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 2344455555555566666666666655554
No 177
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=94.00 E-value=1.6 Score=46.02 Aligned_cols=227 Identities=8% Similarity=0.015 Sum_probs=149.3
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRG--DVMGAIRLYDKAQREGIKLGQYHYNVLLYLC- 236 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G--~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~- 236 (796)
+.+....++|+.+++.+.... |+ +...||.-=..+...| ++++++++++.+....-+ +...|+.--..+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n--P~-----~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~ 114 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL--AS-----HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIG 114 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC--cH-----HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHH
Confidence 344445568999999986532 11 2367887777777888 999999999999976432 344555443333
Q ss_pred ---HccccCCcccCCCCChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChH--HHHHHHHHHH
Q 003768 237 ---SSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFD--DLDSTFNEKE 311 (796)
Q Consensus 237 ---~~~~~~~~~~~k~G~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~--~A~~lf~eM~ 311 (796)
...+ ..++.++++..++ .+... .-.|-..|+---.. +.+.|.++ ++++.+++|.
T Consensus 115 ~~~~~l~-------~~~~~~~EL~~~~-------~~l~~-~pkny~aW~~R~~v------l~~l~~~~~~~EL~~~~~~i 173 (306)
T 3dra_A 115 QIMELNN-------NDFDPYREFDILE-------AMLSS-DPKNHHVWSYRKWL------VDTFDLHNDAKELSFVDKVI 173 (306)
T ss_dssp HHHHHTT-------TCCCTHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhcc-------ccCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHhcccChHHHHHHHHHHH
Confidence 3111 2367888888884 44433 33355666665555 55667777 8999999998
Q ss_pred HcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccC------HHHHHHHHHHHHhCCCCC
Q 003768 312 NLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYA------FQRGFEIYEKMCLDEVPM 385 (796)
Q Consensus 312 ~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~------~~~A~~lf~~M~~~gi~p 385 (796)
+.... |-..| +----.+.+.+. ++++++.++++.... +-
T Consensus 174 ~~d~~-N~sAW---------------------------------~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~ 218 (306)
T 3dra_A 174 DTDLK-NNSAW---------------------------------SHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQ 218 (306)
T ss_dssp HHCTT-CHHHH---------------------------------HHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SS
T ss_pred HhCCC-CHHHH---------------------------------HHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CC
Confidence 76321 11111 111111122233 789999999888764 56
Q ss_pred CHHHHHHHHHHHHhcCChHH-HHHHHHHHHHCC--CCCCcccHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 386 NEASLTAVGRMAMSMGDGDM-AFDMVKRMKSLG--INPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~-A~~l~~~M~~~g--i~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
|...|+-+-..+.+.|+... +..+..+..+.+ -..+...+..+...|++.|+.++|.++++.+.+
T Consensus 219 n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 219 NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 89999999888888888554 444555554332 123556777788899999999999999999876
No 178
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=93.99 E-value=0.21 Score=52.10 Aligned_cols=132 Identities=11% Similarity=-0.042 Sum_probs=90.3
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
+...|++++|.++|+.+...+ |+.+.. -.+-..+.+.+++++|+.
T Consensus 112 L~~~g~y~eA~~~l~~~~~~~--p~~~~~---------------------------------~~~a~l~~~~~r~~dA~~ 156 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPVAG--SEHLVA---------------------------------WMKAVVYGAAERWTDVID 156 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCCTT--CHHHHH---------------------------------HHHHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcC--CchHHH---------------------------------HHHHHHHHHcCCHHHHHH
Confidence 667788888888887665533 322111 233347788999999999
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc--cHHHHHHHHHHcCChHHHHHHHHHHH
Q 003768 374 IYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR--SYGPALSVFCNNGDVDKACSVEEHML 449 (796)
Q Consensus 374 lf~~M~~~gi~pd--~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~--ty~~LI~~~~~~G~~~~A~~l~~~M~ 449 (796)
.|+...... .|. ...+..|=.++...|++++|+..|++.......|... .....-.++.+.|+.++|..+|+++.
T Consensus 157 ~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 157 QVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 998544321 111 2367778888999999999999999987543325432 33345556778999999999999999
Q ss_pred hCCCCCCHHHHHHH
Q 003768 450 EHGVYPEEPELEAL 463 (796)
Q Consensus 450 ~~gv~pd~~ty~~L 463 (796)
+.. |+...+.+|
T Consensus 236 a~~--P~~~~~~aL 247 (282)
T 4f3v_A 236 TTH--PEPKVAAAL 247 (282)
T ss_dssp HHS--CCHHHHHHH
T ss_pred hcC--CcHHHHHHH
Confidence 865 664444444
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=93.88 E-value=0.42 Score=53.27 Aligned_cols=126 Identities=10% Similarity=-0.018 Sum_probs=94.0
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR 421 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--------------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd 421 (796)
..+-..|.+.|++++|...|++.....-... ..+|..+-.+|.+.|++++|...+++..+.. .-+
T Consensus 272 ~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~ 350 (457)
T 1kt0_A 272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SAN 350 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Ccc
Confidence 5556778889999999999998876421111 5789999999999999999999999987753 235
Q ss_pred cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHH-HHHHHH
Q 003768 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYY-LLHKLR 484 (796)
Q Consensus 422 ~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A~~-ll~~M~ 484 (796)
...|..+-.+|...|+.++|...|+...+.. | +...+..|-..+.+.|+.+++.+ ++..|-
T Consensus 351 ~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 351 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677778888999999999999999988743 5 34566777777777787776653 444443
No 180
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=93.88 E-value=1.2 Score=42.65 Aligned_cols=124 Identities=14% Similarity=0.010 Sum_probs=85.3
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC--------------cccH
Q 003768 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPR--------------LRSY 425 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi-~Pd--------------~~ty 425 (796)
+....|.+++|.+.++.-... ..-....+..+-..+...|++++|...|++..+..- .|+ ...|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 334444555555544321111 001234566777888999999999999999876421 121 2577
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 426 ~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..+-.+|.+.|+.++|...++...+.. ..+...|..+-.+|...|++++|...|++....
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 778888899999999999999988753 236778888889999999999999999998776
No 181
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.48 E-value=0.77 Score=41.82 Aligned_cols=113 Identities=12% Similarity=0.058 Sum_probs=90.1
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH----cCCh
Q 003768 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDV 438 (796)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~----~G~~ 438 (796)
.-.++.++|++.|++..+.| .|+.. |-..|...+.+++|++.|++-.+.| +...+..|=..|.. .++.
T Consensus 6 g~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 6 TVKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp SHHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred CCccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccH
Confidence 34457899999999999988 34433 6666777788999999999988875 44556656666776 7899
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhC
Q 003768 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~----~G~~~~A~~ll~~M~~~ 486 (796)
++|.+.|+.-.+.| +...+..|=..|.. .++.++|..+|++-.+.
T Consensus 78 ~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 78 RKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 99999999998876 56777777778877 78999999999988877
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=93.45 E-value=0.38 Score=52.09 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=75.5
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLD---------------EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~---------------gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P 420 (796)
..+-..+.+.|++++|.+.|++..+. --+-+..+|..+..+|.+.|++++|...+++..+. .|
T Consensus 227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p 304 (370)
T 1ihg_A 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DP 304 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--Cc
Confidence 55666788889999999999877651 01123456777777777778888888777776654 23
Q ss_pred -CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHH
Q 003768 421 -RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRV 476 (796)
Q Consensus 421 -d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p-d~~ty~~LI~~~~~~G~~~~A 476 (796)
+...|..+-.+|...|+.++|.+.|+...+.. | +...+..|-..+...++.+++
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777777777777766543 4 344444454444444444444
No 183
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=93.31 E-value=0.46 Score=49.02 Aligned_cols=98 Identities=14% Similarity=-0.003 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI 464 (796)
+...+..+...+.+.|++++|...|++..+. .| +...|..+-..|.+.|+.++|.+.++...+.. .-+...|..+-
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4567888889999999999999999998775 34 56777778888999999999999999988753 23567888889
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 003768 465 RVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 465 ~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+|...|++++|...|.+....
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999987654
No 184
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=93.12 E-value=0.37 Score=40.84 Aligned_cols=64 Identities=11% Similarity=0.040 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
...|..+-..+...|++++|...|++..+.. ..+...|..+-.++.+.|+.++|.+.++...+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4456666666777777777777777665542 123455555666666777777777777776653
No 185
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=93.06 E-value=0.36 Score=41.81 Aligned_cols=79 Identities=15% Similarity=-0.007 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHH
Q 003768 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (796)
Q Consensus 370 ~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~ 449 (796)
+|.+.|++..... +-+...+..+...|...|++++|...|++..+.. ..+...|..+-..|...|+.++|...|+...
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3555666655432 3356677777777777777777777777766542 1223455555566666677777666666554
Q ss_pred h
Q 003768 450 E 450 (796)
Q Consensus 450 ~ 450 (796)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 186
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=92.02 E-value=7.6 Score=41.54 Aligned_cols=233 Identities=9% Similarity=-0.050 Sum_probs=138.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccccCCcccCCCC-ChhhHHHHHhhhccCchhhhccCCCCCcchhhh
Q 003768 205 GDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDY 283 (796)
Q Consensus 205 G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G-~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~ 283 (796)
...++|+++++.+....- -+...||.-=..+. ..| .+++++..++ .+... .-++...|+.
T Consensus 68 e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~----------~l~~~l~eEL~~~~-------~~L~~-nPKny~aW~h 128 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNP-AHYTVWQYRFSLLT----------SLNKSLEDELRLMN-------EFAVQ-NLKSYQVWHH 128 (349)
T ss_dssp CCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH----------HTTCCHHHHHHHHH-------HHHHT-TCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHH----------HhhhhHHHHHHHHH-------HHHHh-CCCcHHHHHH
Confidence 345689999999986541 23445665544554 345 5888888884 33332 2224445655
Q ss_pred cccCcccccccccc-C-ChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHH
Q 003768 284 GSSPMIDKLESNSS-Y-RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSE 361 (796)
Q Consensus 284 LI~~~~~~~~~~~~-g-~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~ 361 (796)
--.. +.+. + ++++++.+++.+.+.. .-.| +-|.+. --++..
T Consensus 129 R~wl------L~~l~~~~~~~EL~~~~k~L~~d----pkNy----------------------~AW~~R-----~wvl~~ 171 (349)
T 3q7a_A 129 RLLL------LDRISPQDPVSEIEYIHGSLLPD----PKNY----------------------HTWAYL-----HWLYSH 171 (349)
T ss_dssp HHHH------HHHHCCSCCHHHHHHHHHHTSSC----TTCH----------------------HHHHHH-----HHHHHH
T ss_pred HHHH------HHHhcCCChHHHHHHHHHHHHhC----CCCH----------------------HHHHHH-----HHHHHH
Confidence 4444 3333 4 6678888887776542 1111 111111 222333
Q ss_pred HHhcc-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHCCCCCCcccHHHHH
Q 003768 362 DAKKY-----AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD-------GDMAFDMVKRMKSLGINPRLRSYGPAL 429 (796)
Q Consensus 362 ~~k~g-----~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~-------~~~A~~l~~~M~~~gi~Pd~~ty~~LI 429 (796)
+.+.. .++++++.++++.+.. +-|...|+-.-..+.+.+. ++++++.+++..... .-|...|+-+-
T Consensus 172 l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr 249 (349)
T 3q7a_A 172 FSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLR 249 (349)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 32221 2358999999998865 4588899988888888776 688888888877652 23556666555
Q ss_pred HHHHHcCCh--------------------HHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003768 430 SVFCNNGDV--------------------DKACSVEEHMLEHG-----VYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (796)
Q Consensus 430 ~~~~~~G~~--------------------~~A~~l~~~M~~~g-----v~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~ 484 (796)
..+.+.|.- ....++..++...+ -.+....+.-|.+.|...|+.++|.++++.+.
T Consensus 250 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 250 GFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 555555543 22333333333221 14678888999999999999999999999998
Q ss_pred hCCCCCChhHH
Q 003768 485 TSVRKVSPSTA 495 (796)
Q Consensus 485 ~~~~~~~p~t~ 495 (796)
+....+..+-|
T Consensus 330 ~~~dpir~~yw 340 (349)
T 3q7a_A 330 SEYDQMRAGYW 340 (349)
T ss_dssp HTTCGGGHHHH
T ss_pred hhhChHHHHHH
Confidence 66333333333
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=91.82 E-value=2.1 Score=39.30 Aligned_cols=98 Identities=18% Similarity=0.139 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CC---------CC-CcccHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSL-------GI---------NP-RLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-------gi---------~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
..+...-..+.+.|++++|...|.+.... .- .| +...|..+-.+|.+.|+.++|...++...+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 35566677888999999999999887654 00 11 235677788889999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 451 ~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.. ..+...|..+-.+|...|++++|...|.+....
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 54 235778889999999999999999999998876
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=91.69 E-value=0.56 Score=52.99 Aligned_cols=95 Identities=9% Similarity=0.002 Sum_probs=71.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHh-----CC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCC---c
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCL-----DE-VPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPR---L 422 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~-----~g-i~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~---gi~Pd---~ 422 (796)
+.|...|...|++++|..++++... .| -.|+ ..+|+.|...|...|++++|..++++..+. -+-|| +
T Consensus 355 ~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 434 (490)
T 3n71_A 355 SIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT 434 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence 8889999999999999999987664 22 1233 457999999999999999999999876532 12233 2
Q ss_pred -ccHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 423 -RSYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 423 -~ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
.+.+.|-.++...+..++|..++..+.+
T Consensus 435 ~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 435 KDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444566677889999999988865
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=91.33 E-value=0.33 Score=51.76 Aligned_cols=126 Identities=9% Similarity=-0.006 Sum_probs=68.5
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA------------------SLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~------------------ty~~LI~~~~~~g~~~~A~~l~~~M~~~g 417 (796)
..+-..+.+.|++++|...|++.... .|+.. .|..+..+|.+.|++++|...+++..+..
T Consensus 183 ~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 260 (338)
T 2if4_A 183 KMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE 260 (338)
T ss_dssp HHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44556677889999999999987653 24433 67778888888888888888888776642
Q ss_pred CCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHH-HHhcCChhHHHHHHHHHHhC
Q 003768 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRV-SVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 418 i~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~-ty~~LI~~-~~~~G~~~~A~~ll~~M~~~ 486 (796)
.-+...|..+-.+|...|+.++|.+.|+...+. .|+.. .+..|-.. ....+..+++..+|..|...
T Consensus 261 -p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 261 -EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 224566777777888888888888888877553 24432 33333333 12345566667777766544
No 190
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=91.26 E-value=3.3 Score=37.49 Aligned_cols=115 Identities=11% Similarity=-0.019 Sum_probs=87.3
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
..-.+++++|...|.+-.+.|- |+. . +=..|...+.+++|++
T Consensus 5 ~g~~~d~~~A~~~~~~aa~~g~-~~a------------------------------------~-lg~~y~~g~~~~~A~~ 46 (138)
T 1klx_A 5 GTVKKDLKKAIQYYVKACELNE-MFG------------------------------------C-LSLVSNSQINKQKLFQ 46 (138)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-TTH------------------------------------H-HHHHTCTTSCHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHcCCC-Hhh------------------------------------h-HHHHHHcCCCHHHHHH
Confidence 4445677888998888888762 111 1 1122334457888999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH----cCChHHHHHHH
Q 003768 374 IYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVDKACSVE 445 (796)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~----~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~----~G~~~~A~~l~ 445 (796)
.|++-.+.| +...+..|-..|.. .++.++|+..|+.-.+.| +...+..|=..|.. .++.++|.+.|
T Consensus 47 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 120 (138)
T 1klx_A 47 YLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTF 120 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 999998886 67888888888988 899999999999998876 34556666667777 78999999999
Q ss_pred HHHHhCC
Q 003768 446 EHMLEHG 452 (796)
Q Consensus 446 ~~M~~~g 452 (796)
+.-.+.|
T Consensus 121 ~~Aa~~g 127 (138)
T 1klx_A 121 EKACRLG 127 (138)
T ss_dssp HHHHHTT
T ss_pred HHHHHCC
Confidence 9888876
No 191
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=91.23 E-value=1.7 Score=34.96 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
...+..+-..+...|++++|...|++..+.. ..+...+..+-..+.+.|+.++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455566666667777777777776665542 123445555556666667777777666666553
No 192
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.49 E-value=0.94 Score=53.60 Aligned_cols=104 Identities=11% Similarity=0.068 Sum_probs=72.3
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChH
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~ 439 (796)
......|++++|+++.+.+ .+...|..|.+.+.+.|+++.|.++|..+.. |..+...|...|+.+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~ 724 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKE 724 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHH
T ss_pred ehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHH
Confidence 4456778999998886543 4678999999999999999999999987643 455666666677777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003768 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (796)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~ 484 (796)
+..++-+.....| -++.-..+|.+.|++++|.+++.++.
T Consensus 725 ~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 725 GLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 7666655555544 12334444556677777777666543
No 193
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=90.19 E-value=3.4 Score=45.79 Aligned_cols=97 Identities=12% Similarity=-0.011 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----------------cccHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----------------LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd----------------~~ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
...|..+-..|.+.|++++|...|++..+. .|+ ...|..+-.+|.+.|+.++|...++...+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 456777888999999999999999988764 233 47788888899999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 451 ~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.. .-+...|..+-.+|...|++++|...|++..+.
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 54 236778888999999999999999999999876
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=89.99 E-value=1.4 Score=37.97 Aligned_cols=80 Identities=9% Similarity=-0.035 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003768 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (796)
Q Consensus 405 ~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~ 484 (796)
.|...|++..+.. .-+...|..+-..|...|+.++|...|+...+.. ..+...|..|-..|...|+.++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777766542 2345677778888999999999999999988754 2346788889999999999999999999887
Q ss_pred hC
Q 003768 485 TS 486 (796)
Q Consensus 485 ~~ 486 (796)
..
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=89.78 E-value=1.4 Score=37.20 Aligned_cols=64 Identities=9% Similarity=0.094 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
+...+..+-..|...|++++|...|++..+.. .-+...|..+-.+|...|+.++|.+.|+...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667777777888888888888887776652 12345666677777777888888777776554
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=89.72 E-value=0.63 Score=39.30 Aligned_cols=64 Identities=11% Similarity=0.171 Sum_probs=53.5
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~ 422 (796)
..+-..+.+.|++++|.+.|++..... +.+...|..+-.++.+.|++++|...+++..+. .|+.
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 71 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTA 71 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCc
Confidence 556667888999999999999988753 347788999999999999999999999998764 4553
No 197
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=89.67 E-value=7.7 Score=41.49 Aligned_cols=224 Identities=11% Similarity=-0.001 Sum_probs=137.5
Q ss_pred hhhcCCcchHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003768 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRG-DVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (796)
Q Consensus 160 ~~k~~~~~~A~~vf~~M~~~g~~~~~g~~Pd~~tyn~lI~a~~k~G-~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (796)
+.+.....+|+++++.+..... + +...||.-=..+...| ++++++++++.+....- -+...|+.--..+.
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP--~-----~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~- 134 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNP--A-----HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLD- 134 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCT--T-----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHH-
T ss_pred HHhCCCCHHHHHHHHHHHHhCc--h-----hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH-
Confidence 4455566789999999865431 1 2367787666777778 59999999999997643 35667776655555
Q ss_pred cccCCcccCCC-C-ChhhHHHHHhhhccCchhhhccCCCCCcchhhhcccCccccccccccCChH--------HHHHHHH
Q 003768 239 AAVGVVKPAKS-G-SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFD--------DLDSTFN 308 (796)
Q Consensus 239 ~~~~~~~~~k~-G-~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~--------~A~~lf~ 308 (796)
+. + +.+++++.++ .+... .-.|...|+--... +.+.|.++ ++++.++
T Consensus 135 ---------~l~~~~~~~EL~~~~-------k~L~~-dpkNy~AW~~R~wv------l~~l~~~~~~~~~~~~eELe~~~ 191 (349)
T 3q7a_A 135 ---------RISPQDPVSEIEYIH-------GSLLP-DPKNYHTWAYLHWL------YSHFSTLGRISEAQWGSELDWCN 191 (349)
T ss_dssp ---------HHCCSCCHHHHHHHH-------HHTSS-CTTCHHHHHHHHHH------HHHHHHTTCCCHHHHHHHHHHHH
T ss_pred ---------HhcCCChHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHhccccccchhhHHHHHHHHH
Confidence 22 4 5678888874 44432 33355556554444 33334444 7777887
Q ss_pred HHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccC-------HHHHHHHHHHHHhC
Q 003768 309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYA-------FQRGFEIYEKMCLD 381 (796)
Q Consensus 309 eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~-------~~~A~~lf~~M~~~ 381 (796)
+|.+.... |...| +-.-..+.+.+. ++++++.++++...
T Consensus 192 k~I~~dp~-N~SAW---------------------------------~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 192 EMLRVDGR-NNSAW---------------------------------GWRWYLRVSRPGAETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp HHHHHCTT-CHHHH---------------------------------HHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCC-CHHHH---------------------------------HHHHHHHHhccccccchHHHHHHHHHHHHHHHh
Confidence 77775321 11122 222222222222 68899999888875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCh--------------------HHHHHHHHHHHHCC-----CCCCcccHHHHHHHHHHcC
Q 003768 382 EVPMNEASLTAVGRMAMSMGDG--------------------DMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNNG 436 (796)
Q Consensus 382 gi~pd~~ty~~LI~~~~~~g~~--------------------~~A~~l~~~M~~~g-----i~Pd~~ty~~LI~~~~~~G 436 (796)
. +-|...|+-+-..+.+.|.. ....+...++...+ -.+......-|...|+..|
T Consensus 238 ~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~ 316 (349)
T 3q7a_A 238 I-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQN 316 (349)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTT
T ss_pred C-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcC
Confidence 4 45888998877777777664 12222222222111 0245556667888999999
Q ss_pred ChHHHHHHHHHHHh
Q 003768 437 DVDKACSVEEHMLE 450 (796)
Q Consensus 437 ~~~~A~~l~~~M~~ 450 (796)
+.++|.++++.+.+
T Consensus 317 ~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 317 RVDDAAKVFEKLSS 330 (349)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999864
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=89.26 E-value=3 Score=44.88 Aligned_cols=97 Identities=14% Similarity=0.031 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC--------------CCCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSL--------------GINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~--------------gi~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv 453 (796)
.|..+-..+.+.|++++|...|++..+. ...| +...|..+-.+|.+.|+.++|.+.++...+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 4666778899999999999999987751 0122 34677778888999999999999999998754
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 454 ~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.-+...|..+-.+|...|++++|...|++..+.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 225778888889999999999999999998876
No 199
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=88.45 E-value=6.8 Score=42.21 Aligned_cols=140 Identities=9% Similarity=-0.039 Sum_probs=93.3
Q ss_pred hhHHHHHHh-----ccCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh---cC--ChHHHHHHHHHHHH----CCCCC
Q 003768 356 EIRLSEDAK-----KYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMS---MG--DGDMAFDMVKRMKS----LGINP 420 (796)
Q Consensus 356 n~lI~~~~k-----~g~~~~A~~lf~~M~~~gi~pd-~~ty~~LI~~~~~---~g--~~~~A~~l~~~M~~----~gi~P 420 (796)
...+.+... ...+.+|..+|++..+. .|+ ...|..+.-+|.. .+ .......+-..+.. ..-..
T Consensus 198 dl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~ 275 (372)
T 3ly7_A 198 TNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN 275 (372)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence 566655443 23468999999998875 354 3455544444431 11 11111111111111 12245
Q ss_pred CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 003768 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAK 500 (796)
Q Consensus 421 d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~t~~~I~~ 500 (796)
+..+|..+-..+...|+.++|...++.....+ |+...|..+=..+.-.|+.++|.+.+++-... .|.+.|+..++.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~~~ 351 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYWIEN 351 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHHHhC
Confidence 67788777667777899999999999999986 88888877778888999999999999988877 777777765554
Q ss_pred H
Q 003768 501 W 501 (796)
Q Consensus 501 ~ 501 (796)
+
T Consensus 352 l 352 (372)
T 3ly7_A 352 G 352 (372)
T ss_dssp S
T ss_pred c
Confidence 3
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=88.23 E-value=3.3 Score=33.18 Aligned_cols=60 Identities=20% Similarity=0.190 Sum_probs=50.8
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (796)
..+-..+.+.|++++|.+.|++..... +.+..++..+...+.+.|++++|...|++..+.
T Consensus 13 ~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 13 YNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 445567788999999999999988753 346778999999999999999999999998765
No 201
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=87.71 E-value=6.9 Score=36.86 Aligned_cols=105 Identities=8% Similarity=0.019 Sum_probs=68.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCC-C-----CH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCC
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVP-M-----NE-----ASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----GINPR 421 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~-p-----d~-----~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----gi~Pd 421 (796)
.=..+.+.|++++|.+.|++.....-. | +. ..|+.+-.++.+.|++++|+..+++..+. -+.|+
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 334567789999999999987764211 1 22 38888888888999999998888877653 12454
Q ss_pred c-ccH----HHHHHHHHHcCChHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 003768 422 L-RSY----GPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPELEA 462 (796)
Q Consensus 422 ~-~ty----~~LI~~~~~~G~~~~A~~l~~~M~~-----~gv~pd~~ty~~ 462 (796)
- ..| ...=.++...|+.++|.+.|+...+ .|+.+.......
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMME 147 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 2 234 4444566667777777777766543 244444444333
No 202
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=87.14 E-value=1.5 Score=48.44 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=42.9
Q ss_pred hcCChHHHHHHHHHHHHC---CCCCC----cccHHHHHHHHHHcCChHHHHHHHHHHHhC-----C-CCCC-HHHHHHHH
Q 003768 399 SMGDGDMAFDMVKRMKSL---GINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH-----G-VYPE-EPELEALL 464 (796)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~---gi~Pd----~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~-----g-v~pd-~~ty~~LI 464 (796)
+.|++++|..++++..+. -+-|+ ..+++.|...|...|++++|..++++..+- | -.|+ ..+|+.|-
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 344555555555555432 11122 235555555555566666666555544321 1 1122 23456666
Q ss_pred HHHHhcCChhHHHHHHHH
Q 003768 465 RVSVEAGKGDRVYYLLHK 482 (796)
Q Consensus 465 ~~~~~~G~~~~A~~ll~~ 482 (796)
..|...|++++|..++++
T Consensus 379 ~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHH
Confidence 666666666666666654
No 203
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=86.30 E-value=9.6 Score=42.69 Aligned_cols=121 Identities=9% Similarity=0.038 Sum_probs=85.1
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-ccHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVF 432 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~--~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~-~ty~~LI~~~ 432 (796)
-..+..+-+.+.+++|..+|+.....+ .+...|- +.+...+ .++.+.|..+|+...+.- |+. ..+...|...
T Consensus 290 ~~y~~~~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e 364 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHH
Confidence 334555556778999999999882222 2334443 3333322 336999999999887642 332 2345567777
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 433 ~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+.|+.+.|..+|+... .....|...++.=...|+.+.+..+++++...
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 78899999999999973 35788888888888889999999989888753
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=86.13 E-value=2.4 Score=46.99 Aligned_cols=83 Identities=11% Similarity=-0.013 Sum_probs=47.2
Q ss_pred CChHHHHHHHHHHHHC---CCCCC----cccHHHHHHHHHHcCChHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHH
Q 003768 401 GDGDMAFDMVKRMKSL---GINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH-----G-VYPE-EPELEALLRV 466 (796)
Q Consensus 401 g~~~~A~~l~~~M~~~---gi~Pd----~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~-----g-v~pd-~~ty~~LI~~ 466 (796)
|++++|..++++..+. -+-|+ ..+|+.|-..|...|++++|..++++..+- | -.|+ ..+|+.|-..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4566666666554331 12222 355666666666666666666666655431 2 1122 2456667777
Q ss_pred HHhcCChhHHHHHHHHH
Q 003768 467 SVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 467 ~~~~G~~~~A~~ll~~M 483 (796)
|...|++++|..++++.
T Consensus 392 ~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 392 YMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHH
Confidence 77777777777777653
No 205
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=85.96 E-value=8.2 Score=36.36 Aligned_cols=96 Identities=11% Similarity=0.035 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------c-----ccHHHHHHHHHHcCChHHHHHHHHHHHhC----
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--------L-----RSYGPALSVFCNNGDVDKACSVEEHMLEH---- 451 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd--------~-----~ty~~LI~~~~~~G~~~~A~~l~~~M~~~---- 451 (796)
.+...-..+.+.|++++|...|++..+. .|+ . ..|+.+=.++.+.|+.++|...++..++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3445556778899999999999987764 233 2 27888888999999999999999998874
Q ss_pred -CCCCCH-HHH----HHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 452 -GVYPEE-PEL----EALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 452 -gv~pd~-~ty----~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.+.|+. ..| ..+=.++...|++++|...|++..+-
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 225754 456 67778889999999999999987653
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=85.95 E-value=1.8 Score=36.48 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=50.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (796)
..+-..|.+.|++++|.+.|++..+.. +-+..+|..+-.+|...|++++|...|++..+
T Consensus 11 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 11 YALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 556677889999999999999988764 33567899999999999999999999988654
No 207
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=85.87 E-value=2.3 Score=45.00 Aligned_cols=95 Identities=11% Similarity=-0.076 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc------------------cHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR------------------SYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~------------------ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
.+..+-..+.+.|++++|...|++.... .|+.. .|..+-.+|.+.|++++|...++...+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556677788899999999999987654 34433 677788888999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 451 ~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.. .-+...|..+-.+|...|++++|...|++....
T Consensus 259 ~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 259 EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 54 236778899999999999999999999988654
No 208
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=85.54 E-value=7.9 Score=37.11 Aligned_cols=104 Identities=10% Similarity=0.127 Sum_probs=81.6
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCh
Q 003768 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (796)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~ 438 (796)
.+-....|+++.|.++-+++ -+...|..|-+.....|+++-|.+.|.... -|..|.--|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---------D~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH---------SFDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT---------CHHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC---------CHHHHHHHHHHhCCH
Confidence 34456789999999998887 368999999999999999999999998753 356677778888998
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003768 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M 483 (796)
++-.++-+.-...| -++.-...+.-.|+++++.++|.+.
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 88776665555544 2455566667789999999988654
No 209
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=85.00 E-value=6.6 Score=44.03 Aligned_cols=89 Identities=8% Similarity=0.050 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHH-----HHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHH
Q 003768 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP-----ALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPEL 460 (796)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~-----LI~~~~~~G~~~~A~~l~~~M~~~gv~pd-~~ty 460 (796)
...|-..++..-+.++++.|..+|+.. .. |. .++.. .+...+ .++.+.|..+|+...+.- |+ ...+
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~---~~-~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~ 357 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GN---EG-VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLK 357 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TT---SC-CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hC---CC-CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHH
Confidence 356777777777788999999999988 22 32 23332 333222 347999999999988753 33 4456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 003768 461 EALLRVSVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 461 ~~LI~~~~~~G~~~~A~~ll~~M 483 (796)
...++...+.|+.+.|..+|++.
T Consensus 358 ~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 66788888899999999999997
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=84.77 E-value=2 Score=47.48 Aligned_cols=93 Identities=11% Similarity=0.053 Sum_probs=72.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhC--C-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCC-cc
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLD--E-VPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPR-LR 423 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~--g-i~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----g-i~Pd-~~ 423 (796)
.+..+.+.|++++|.+++++..+. . +.|+ ..+++.|..+|...|++++|+.++++.... | -.|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 456677889999999999988753 1 2222 458899999999999999999999987642 2 2233 45
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003768 424 SYGPALSVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 424 ty~~LI~~~~~~G~~~~A~~l~~~M~~ 450 (796)
+|+.|=..|...|+.++|..++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 788888899999999999999988765
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=83.33 E-value=3.5 Score=45.56 Aligned_cols=87 Identities=7% Similarity=-0.084 Sum_probs=67.3
Q ss_pred hccCHHHHHHHHHHHHh---CCCCC---C-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCC-cccHHHHH
Q 003768 364 KKYAFQRGFEIYEKMCL---DEVPM---N-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPR-LRSYGPAL 429 (796)
Q Consensus 364 k~g~~~~A~~lf~~M~~---~gi~p---d-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----g-i~Pd-~~ty~~LI 429 (796)
..|++++|..++++..+ .-+.| + ..+++.|..+|...|++++|..++++.... | -.|+ ..+|+.|=
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35688999999987664 22223 2 368999999999999999999999987542 2 2233 45788888
Q ss_pred HHHHHcCChHHHHHHHHHHHh
Q 003768 430 SVFCNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 430 ~~~~~~G~~~~A~~l~~~M~~ 450 (796)
..|...|+.++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988765
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=82.97 E-value=4.3 Score=33.39 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=39.1
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~-ty~~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (796)
..+.+.|++++|.+.|++..+.. +-+.. .|..+-.+|...|++++|...|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34566777888888887776643 23455 6777777777778888888887776654
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=81.55 E-value=11 Score=44.23 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=57.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+-..+.+.++++.|.+.|..+.. |..+...|...|+.+...++-+.....|- |+....+|.+.
T Consensus 685 ~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~ 749 (814)
T 3mkq_A 685 RALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIA 749 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHc
Confidence 8888999999999999999998864 45677777778888877766665555543 46666667777
Q ss_pred CChHHHHHHHHH
Q 003768 436 GDVDKACSVEEH 447 (796)
Q Consensus 436 G~~~~A~~l~~~ 447 (796)
|++++|.+++.+
T Consensus 750 g~~~~a~~~~~~ 761 (814)
T 3mkq_A 750 GDIQGAKDLLIK 761 (814)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 777777666544
No 214
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=80.12 E-value=4.5 Score=38.11 Aligned_cols=95 Identities=13% Similarity=0.157 Sum_probs=59.0
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH----------HHHHHHHHHHHCCCCCC-cccHHHHH
Q 003768 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGD----------MAFDMVKRMKSLGINPR-LRSYGPAL 429 (796)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~----------~A~~l~~~M~~~gi~Pd-~~ty~~LI 429 (796)
...+.+.+++|.+.++...+.. +-+...|+.+-.++...++++ +|...|++..+. .|+ ...|..+=
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG 87 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIG 87 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHH
Confidence 3456778899999999888764 447778887777777776654 666666665544 343 34555555
Q ss_pred HHHHHcC-----------ChHHHHHHHHHHHhCCCCCCHHHH
Q 003768 430 SVFCNNG-----------DVDKACSVEEHMLEHGVYPEEPEL 460 (796)
Q Consensus 430 ~~~~~~G-----------~~~~A~~l~~~M~~~gv~pd~~ty 460 (796)
.+|...| ++++|.+.|+...+. .|+...|
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y 127 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHY 127 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHH
Confidence 5555543 555555555555542 2544444
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=79.31 E-value=7.3 Score=31.93 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=29.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-cc-cHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 395 RMAMSMGDGDMAFDMVKRMKSLGINPR-LR-SYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~gi~Pd-~~-ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
..+.+.|++++|...|++..+. .|+ .. .|..+-..|...|+.++|.+.|+...+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445566666666666665543 232 23 4444445555566666666666655543
No 216
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=77.81 E-value=15 Score=33.66 Aligned_cols=62 Identities=15% Similarity=0.024 Sum_probs=29.7
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi 418 (796)
+..++.+...|.-+.-.++..++.. +.+|+....-.+..+|.+.|+..+|.+++.+..+.|+
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3444444555555555555544322 2244444444555555555555555555555544443
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=77.07 E-value=45 Score=30.63 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=83.0
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-C----------------CCCCcccHHH
Q 003768 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-G----------------INPRLRSYGP 427 (796)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-g----------------i~Pd~~ty~~ 427 (796)
.|.++++.++..+..... +..-||-+|--....-+-+..+++++.+-+. . ..-+..-+..
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~ 96 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNK 96 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHH
Confidence 456788899998887753 5666676666666666666666666654321 0 1123444566
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 428 LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
.|+.+...|.-++-.++..++.. +-.|+....-.+-.+|.+.|+..+|.+++.+.-++
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 77777788888888888887543 44678888888999999999999999999888887
No 218
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=76.77 E-value=9.9 Score=37.03 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003768 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (796)
Q Consensus 196 ~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd 225 (796)
+.|...++.|+.+....+++.+.+.|..++
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 456677788888888888887777776554
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=74.20 E-value=23 Score=33.01 Aligned_cols=81 Identities=7% Similarity=-0.015 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCC---CcccHHHHHHHHHHcCChHH
Q 003768 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG---DGDMAFDMVKRMKSLGINP---RLRSYGPALSVFCNNGDVDK 440 (796)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g---~~~~A~~l~~~M~~~gi~P---d~~ty~~LI~~~~~~G~~~~ 440 (796)
.+..+.+-|.+....|. ++..+--.+.-++++.. +++++..+|++..+.. .| ....|+ |=-+|.+.|+.++
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~-LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFY-LAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHH-HHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHH-HHHHHHHccCHHH
Confidence 34455666665555553 45555555666666666 5557777777766553 23 112233 2233455555555
Q ss_pred HHHHHHHHHh
Q 003768 441 ACSVEEHMLE 450 (796)
Q Consensus 441 A~~l~~~M~~ 450 (796)
|.+.++.+.+
T Consensus 90 A~~y~~~lL~ 99 (152)
T 1pc2_A 90 ALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555554
No 220
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=73.99 E-value=48 Score=34.94 Aligned_cols=48 Identities=8% Similarity=0.041 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHC
Q 003768 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD-GDMAFDMVKRMKSL 416 (796)
Q Consensus 368 ~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~-~~~A~~l~~~M~~~ 416 (796)
+++++++++.|.+.. +-|-.+|+----.+...|. .+++++.++.+.+.
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 455555555555432 2344455444444444444 35555555555443
No 221
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=68.79 E-value=1.2e+02 Score=31.85 Aligned_cols=228 Identities=8% Similarity=-0.051 Sum_probs=126.6
Q ss_pred HHHhcCCHH-HHHHHHHHHHHcCCCCCHH-HHHHH---HHHHHccccCCccc-CCCCChhhHHHHHhhhccCchhhhccC
Q 003768 200 MCSKRGDVM-GAIRLYDKAQREGIKLGQY-HYNVL---LYLCSSAAVGVVKP-AKSGSGMRTLDTFEVSTMNSTELGDSR 273 (796)
Q Consensus 200 a~~k~G~~~-~A~~lf~~M~~~Gi~pd~~-tyn~L---L~a~~~~~~~~~~~-~k~G~~~~A~~vf~~~~~~s~em~~~~ 273 (796)
...+.|.+. +|+++++.+... .|+-+ .||.- |....... .+ .....+++++..++ .+...
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~----~~~~~~~~l~~EL~~~~-------~~L~~- 103 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEK----SPEESAALVKAELGFLE-------SCLRV- 103 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHH-------HHHHH-
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccc----cchhhhHHHHHHHHHHH-------HHHHh-
Confidence 345667765 799999999864 34433 34432 22222100 00 00011455666663 22221
Q ss_pred CCCCcchhhhcccCccccccccccC--ChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCccccccccccc
Q 003768 274 DMDNNGQLDYGSSPMIDKLESNSSY--RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (796)
Q Consensus 274 gv~d~~tyn~LI~~~~~~~~~~~~g--~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~ 351 (796)
.-.+...|+.--.. +.+.+ .+++++.+++.|.+.. .--| ..|
T Consensus 104 ~PKny~aW~hR~wl------L~~l~~~~~~~EL~~~~k~l~~d----prNy-------------------~AW------- 147 (331)
T 3dss_A 104 NPKSYGTWHHRCWL------LSRLPEPNWARELELCARFLEAD----ERNF-------------------HCW------- 147 (331)
T ss_dssp CTTCHHHHHHHHHH------HHHCSSCCHHHHHHHHHHHHHHC----TTCH-------------------HHH-------
T ss_pred CCCCHHHHHHHHHH------HhccCcccHHHHHHHHHHHHHhC----CCCH-------------------HHH-------
Confidence 22244455554444 44444 4788888888887752 1111 111
Q ss_pred ccchhhHHHHHHhccC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHC
Q 003768 352 QDADEIRLSEDAKKYA-FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM--------------GDGDMAFDMVKRMKSL 416 (796)
Q Consensus 352 ~~~~n~lI~~~~k~g~-~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~--------------g~~~~A~~l~~~M~~~ 416 (796)
+----.+.+.|. ++++++.++.+.+.. +-|..+|+-.-..+.+. +.++++++.+......
T Consensus 148 ----~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 148 ----DYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 222 (331)
T ss_dssp ----HHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence 111122233455 689999999998865 45788888776666654 4577888888877654
Q ss_pred CCCCCcccHHHHHHHHHHc-----------CChHHHHHHHHHHHhCCCCCCHHHHHH--HH---HHHHhcCChhHHHHHH
Q 003768 417 GINPRLRSYGPALSVFCNN-----------GDVDKACSVEEHMLEHGVYPEEPELEA--LL---RVSVEAGKGDRVYYLL 480 (796)
Q Consensus 417 gi~Pd~~ty~~LI~~~~~~-----------G~~~~A~~l~~~M~~~gv~pd~~ty~~--LI---~~~~~~G~~~~A~~ll 480 (796)
. +-|...|+-+-..+.+. +.++++.+.++++.+.. ||. .|+. ++ .+....|..+++...+
T Consensus 223 ~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~--pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l 298 (331)
T 3dss_A 223 D-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE--PEN-KWCLLTIILLMRALDPLLYEKETLQYF 298 (331)
T ss_dssp S-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--ccc-chHHHHHHHHHHhhcccccHHHHHHHH
Confidence 2 22445555333333333 45788999999998744 664 3432 21 1122356667777888
Q ss_pred HHHHhC
Q 003768 481 HKLRTS 486 (796)
Q Consensus 481 ~~M~~~ 486 (796)
.++.+-
T Consensus 299 ~~l~~~ 304 (331)
T 3dss_A 299 STLKAV 304 (331)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887754
No 222
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=66.86 E-value=6.1 Score=39.34 Aligned_cols=31 Identities=19% Similarity=0.009 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003768 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (796)
Q Consensus 196 ~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~ 226 (796)
..|...++.|+.+....+++.+.+.|..++.
T Consensus 7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~ 37 (260)
T 3jxi_A 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTD 37 (260)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCcch
Confidence 3456677888888888888888777766653
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=66.49 E-value=32 Score=28.70 Aligned_cols=64 Identities=11% Similarity=0.023 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003768 386 NEASLTAVGRMAMSMGD---GDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~---~~~A~~l~~~M~~~gi~Pd-~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~ 451 (796)
|...+..+..++...++ .++|..+|++..+. .|+ .+....+=..+.+.|+.++|...|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555555543333 45666666655543 233 233333334555566666666666666554
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=65.71 E-value=36 Score=31.63 Aligned_cols=96 Identities=11% Similarity=0.009 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCChhHHH
Q 003768 403 GDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG---DVDKACSVEEHMLEHGVYP-E-EPELEALLRVSVEAGKGDRVY 477 (796)
Q Consensus 403 ~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G---~~~~A~~l~~~M~~~gv~p-d-~~ty~~LI~~~~~~G~~~~A~ 477 (796)
+..+.+-|.+....|- ++..+---+--++++.. ++++|..++++..+.. .| + ...+=.|=-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4556666766666555 56666555677788888 7789999999998865 34 2 233334445678999999999
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHH
Q 003768 478 YLLHKLRTSVRKVSPSTADVIAKWF 502 (796)
Q Consensus 478 ~ll~~M~~~~~~~~p~t~~~I~~~~ 502 (796)
+.++.+.+. .|.-.-...++..+
T Consensus 92 ~y~~~lL~i--eP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 92 KYVRGLLQT--EPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHhc--CCCCHHHHHHHHHH
Confidence 999999987 44333333344433
No 225
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=65.43 E-value=20 Score=38.48 Aligned_cols=74 Identities=14% Similarity=0.040 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 003768 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (796)
Q Consensus 384 ~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (796)
+.+..+|.++.-.+...|++++|...+++....+ |+...|..+=..+.-.|+.++|.+.+++..... |...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChHH
Confidence 5678888888887887899999999999998875 776666555566778899999999998877754 8777763
No 226
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=65.25 E-value=69 Score=36.34 Aligned_cols=132 Identities=5% Similarity=-0.039 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC-ChHHHHHH
Q 003768 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG--DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG-DVDKACSV 444 (796)
Q Consensus 368 ~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g--~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G-~~~~A~~l 444 (796)
++++++.++.+.... +-+..+|+.---.+.+.| ++++|++.+++|.+... -|...|+.--..+.+.| ..+++.+.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHH
Confidence 899999999998764 447788888888888889 77999999999998732 24556666656667778 88999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc--------------CChhHHHHHHHHHHhCCCCCCh-hHHHHHHHHHhc
Q 003768 445 EEHMLEHGVYPEEPELEALLRVSVEA--------------GKGDRVYYLLHKLRTSVRKVSP-STADVIAKWFNS 504 (796)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~LI~~~~~~--------------G~~~~A~~ll~~M~~~~~~~~p-~t~~~I~~~~~~ 504 (796)
++.+.+.. .-|...|+-.-..+.+. +.++++.+.+++.... .|.- +.|.-...++..
T Consensus 167 ~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 167 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp HHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSC
T ss_pred HHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhc
Confidence 99998765 23677787776666553 4568888888887765 3332 355444444443
No 227
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=64.32 E-value=20 Score=38.77 Aligned_cols=56 Identities=7% Similarity=0.065 Sum_probs=28.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHHHH
Q 003768 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (796)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M 448 (796)
.++.++...|+.++|...+..+... -.-+...|..+|.+|.+.|+..+|.+.|+.+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555555555555555554433 1224445555555555555555555555544
No 228
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=63.08 E-value=45 Score=32.84 Aligned_cols=113 Identities=12% Similarity=0.051 Sum_probs=60.4
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccH--HHHHH
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLD-EVPMN---EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY--GPALS 430 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~-gi~pd---~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty--~~LI~ 430 (796)
+.+...++.|..+-+.. +.+. |..++ ..-.+.| ...+..|+.....++++.+.+.|..++.... .+.|.
T Consensus 150 t~L~~A~~~~~~~~v~~----Ll~~~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~ 224 (285)
T 1wdy_A 150 TALMDAAEKGHVEVLKI----LLDEMGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224 (285)
T ss_dssp CHHHHHHHHTCHHHHHH----HHHTSCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred cHHHHHHHcCCHHHHHH----HHHhcCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 45556667777654444 4433 44433 2223333 3345566666667788888888887766432 34566
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChhHHH
Q 003768 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPEL--EALLRVSVEAGKGDRVY 477 (796)
Q Consensus 431 ~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty--~~LI~~~~~~G~~~~A~ 477 (796)
..++.|+.+-+..+++. .|..++.... .+-+...++.|..+-+.
T Consensus 225 ~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~l~~A~~~~~~~i~~ 270 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLAVELKLKKIAE 270 (285)
T ss_dssp HHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHhc---cCCCccccCCCCCcHHHHHHHcCcHHHHH
Confidence 67778887554444431 4554442211 22334445566654433
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=62.97 E-value=39 Score=32.26 Aligned_cols=104 Identities=14% Similarity=0.092 Sum_probs=71.2
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
..+=+...+.|+++-|.+.|..... |..|.-.|...|+.+.-..+-+.-...| -|+.....+.-.
T Consensus 38 k~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~l 102 (177)
T 3mkq_B 38 ERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYN 102 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHc
Confidence 8888888999999999999998764 4556667777888887776665555554 367788888889
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003768 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M 483 (796)
|+++++.++|.+... .|.... .....|..+.|.+++.++
T Consensus 103 Gdv~~~i~lL~~~~r---~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 103 NSTKERSSIFAEGGS---LPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp TCHHHHHHHHHHTTC---HHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCC---hHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 999999988855322 121111 112245566666666554
No 230
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=62.71 E-value=15 Score=39.78 Aligned_cols=59 Identities=12% Similarity=0.071 Sum_probs=51.5
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (796)
..++..+...|+.++|...+..+.... +.++..|-.||.++.+.|+..+|++.|+.+..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456778889999999999998887653 66999999999999999999999999998754
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=60.58 E-value=37 Score=28.54 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=10.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 003768 392 AVGRMAMSMGDGDMAFDMVKRM 413 (796)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M 413 (796)
.|-..+.+.|+++.|..-|++.
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~A 31 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQA 31 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHH
Confidence 3444444555555555555443
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=58.21 E-value=77 Score=37.36 Aligned_cols=127 Identities=10% Similarity=0.068 Sum_probs=80.1
Q ss_pred hhHHHHHHh----ccC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHC------CCCCCcc
Q 003768 356 EIRLSEDAK----KYA-FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD-GDMAFDMVKRMKSL------GINPRLR 423 (796)
Q Consensus 356 n~lI~~~~k----~g~-~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~-~~~A~~l~~~M~~~------gi~Pd~~ 423 (796)
|-|++++.+ .++ .+.|.++|+++....-.-+.....++|..+.+.++ --+|.+++.+..+. .+.+...
T Consensus 248 N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 248 NYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp SHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 666666544 344 68899999999886422222223344444444332 22455555544321 2222221
Q ss_pred c------H-HHHHH----HHHHcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003768 424 S------Y-GPALS----VFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLR 484 (796)
Q Consensus 424 t------y-~~LI~----~~~~~G~~~~A~~l~~~M~~~gv~pd-~~ty~~LI~~~~~~G~~~~A~~ll~~M~ 484 (796)
. + ..||. .|...|+.+.|+++-+.-... .|+ -.+|-.|..+|...|+++.|+-.++.+.
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1 1 12333 344679999999999887764 365 6899999999999999999999999874
No 233
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=57.86 E-value=15 Score=35.66 Aligned_cols=148 Identities=12% Similarity=-0.010 Sum_probs=78.3
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcceeccchhhhHHhhhhcCCCCcccccccccccccchhhHHHHHHhccCHHHHHH
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~ty~~g~~~~A~~l~~~m~pd~~ty~~~~~~~~~~~n~lI~~~~k~g~~~~A~~ 373 (796)
.+..|+.+.+..+++.+...|..++.... ...+.+...+..|..+
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-------------------------------~g~t~L~~A~~~~~~~---- 60 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELDIYNN-------------------------------LRQTPLHLAVITTLPS---- 60 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSCCCCT-------------------------------TSCCHHHHHHHTTCHH----
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcccc-------------------------------cCCCHHHHHHHcCCHH----
Confidence 47778888888888877778776665433 0033445556667653
Q ss_pred HHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc--cHHHHHHHHHHcCChHHHHHHHHHHH
Q 003768 374 IYEKMCLDEVPMNEAS--LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR--SYGPALSVFCNNGDVDKACSVEEHML 449 (796)
Q Consensus 374 lf~~M~~~gi~pd~~t--y~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~--ty~~LI~~~~~~G~~~~A~~l~~~M~ 449 (796)
+++.+.+.|..++... -.+.+...+..|+.+-...+++.....++.++.. .-.+.+...+..|+.+ +.+.+.
T Consensus 61 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll 136 (241)
T 1k1a_A 61 VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQE----TVQLLL 136 (241)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHH----HHHHHH
T ss_pred HHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHH----HHHHHH
Confidence 4555555665544321 1234445566777766555555432212222221 1123444555667654 444555
Q ss_pred hCCCCCCHHH---HHHHHHHHHhcCChhHHHHHH
Q 003768 450 EHGVYPEEPE---LEALLRVSVEAGKGDRVYYLL 480 (796)
Q Consensus 450 ~~gv~pd~~t---y~~LI~~~~~~G~~~~A~~ll 480 (796)
+.|..++... -.+.+...+..|+.+-+..++
T Consensus 137 ~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 170 (241)
T 1k1a_A 137 ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 170 (241)
T ss_dssp HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HcCCCcccccccCCCcHHHHHHHcCCHHHHHHHH
Confidence 5665554322 233444555667765444444
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=55.04 E-value=1.3e+02 Score=28.09 Aligned_cols=104 Identities=11% Similarity=-0.019 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCc----ccHHHHHHHH---HHcCChHHHHHHHHHHHhCC
Q 003768 386 NEASLTAVGRMAMSMGDG------DMAFDMVKRMKSLGINPRL----RSYGPALSVF---CNNGDVDKACSVEEHMLEHG 452 (796)
Q Consensus 386 d~~ty~~LI~~~~~~g~~------~~A~~l~~~M~~~gi~Pd~----~ty~~LI~~~---~~~G~~~~A~~l~~~M~~~g 452 (796)
|--+|=..|+..-+.|+. ++..++|++.... ++|+. +.|--|.--| -..+|+++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 444555555555656666 6666777765543 55542 2222222212 23489999999999997652
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 003768 453 VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (796)
Q Consensus 453 v~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~ 493 (796)
-.- ...|..--..=.+.|+++.|.+++..-... ++.|.
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~--~~k~~ 128 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVER--GAVPL 128 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCBCH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CCCcH
Confidence 222 666666666668899999999999998887 77665
No 235
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=54.71 E-value=17 Score=34.13 Aligned_cols=76 Identities=17% Similarity=0.266 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG-----------DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g-----------~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
.+++|...|++..+.. +-+..+|..+=.+|...| ++++|.+.|++..+. .|+...|.-.|..
T Consensus 61 ~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~---- 133 (158)
T 1zu2_A 61 MIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM---- 133 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH----
Confidence 3679999999888754 235678888999998764 899999999988765 6887777655543
Q ss_pred CChHHHHHHHHHHHhC
Q 003768 436 GDVDKACSVEEHMLEH 451 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~ 451 (796)
.++|-+++-+....
T Consensus 134 --~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 134 --TAKAPQLHAEAYKQ 147 (158)
T ss_dssp --HHTHHHHHHHHHHS
T ss_pred --HHhCHhccCccccc
Confidence 34555555555443
No 236
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=53.99 E-value=46 Score=31.84 Aligned_cols=20 Identities=5% Similarity=-0.203 Sum_probs=13.6
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 003768 197 ELDMCSKRGDVMGAIRLYDK 216 (796)
Q Consensus 197 lI~a~~k~G~~~~A~~lf~~ 216 (796)
.|...++.|+++....++..
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHh
Confidence 46666777777777666654
No 237
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=52.96 E-value=58 Score=32.87 Aligned_cols=94 Identities=12% Similarity=0.105 Sum_probs=51.2
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~ 435 (796)
+.+...+..|..+ +++.+.+.|..+ +...-.+.+...+..|+.+-+..+++.-..... .|..-+++.|...+..
T Consensus 131 t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~ 205 (285)
T 3kea_A 131 TSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDN 205 (285)
T ss_dssp SHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHH
T ss_pred CHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHc
Confidence 4455556667654 445555555433 221233445566778888766666654332221 2223334445666667
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHH
Q 003768 436 GDVDKACSVEEHMLEHGVYPEEPE 459 (796)
Q Consensus 436 G~~~~A~~l~~~M~~~gv~pd~~t 459 (796)
|+. ++.+.+.+.|..|+...
T Consensus 206 ~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 206 KDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp TCH----HHHHHHTTSCBCSTTTT
T ss_pred CCH----HHHHHHHHcCCCCCCCC
Confidence 775 45556667787776654
No 238
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=52.75 E-value=82 Score=27.24 Aligned_cols=63 Identities=11% Similarity=0.018 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 003768 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (796)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~ 430 (796)
+.-+..+-++.+-...+.|+.....+.+++|-+..++..|.++|+-.+.. +.+...+|..+|.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 44455556666666677777777777777777777777777777776543 2233444655543
No 239
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=51.49 E-value=75 Score=32.94 Aligned_cols=105 Identities=11% Similarity=0.090 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCC--CcccHHHHHHHHHHc-C
Q 003768 368 FQRGFEIYEKMCLDEVPMN---EASLTAVGRMAMSM-----GDGDMAFDMVKRMKSLGINP--RLRSYGPALSVFCNN-G 436 (796)
Q Consensus 368 ~~~A~~lf~~M~~~gi~pd---~~ty~~LI~~~~~~-----g~~~~A~~l~~~M~~~gi~P--d~~ty~~LI~~~~~~-G 436 (796)
...|..++++..+- -|+ -..|++|...|.+. |+.++|.+.|++-.+. .| +..++...-..+|.. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 45566666655543 355 67899999999994 9999999999988765 45 367777778888885 9
Q ss_pred ChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003768 437 DVDKACSVEEHMLEHGVY--PEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~--pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~ 484 (796)
+.++|.+.+++-...... |+....|.+ .-.+|..++.++.
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~~ 296 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHVQ 296 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHhH
Confidence 999999999999887665 664443333 3345556655543
No 240
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=45.60 E-value=1.9e+02 Score=32.71 Aligned_cols=119 Identities=7% Similarity=-0.036 Sum_probs=89.0
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCcccHHHHHHHHHH
Q 003768 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD----------GDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (796)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~----------~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~ 434 (796)
...-++|++.++++.... +-+..+|+.-=.++.+.|+ ++++++.++.+.+..- =+...|+.---.+.+
T Consensus 42 ~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 335678899999998764 3356677766666666666 8999999999987531 234456655556667
Q ss_pred cC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhC
Q 003768 435 NG--DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG-KGDRVYYLLHKLRTS 486 (796)
Q Consensus 435 ~G--~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G-~~~~A~~ll~~M~~~ 486 (796)
.| ++++|.+.++.+.+.. .-|...|+.---++.+.| ..+++.+.++++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~ 173 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 173 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 78 7799999999999865 247778887777777888 889999999988876
No 241
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=45.39 E-value=1.3e+02 Score=24.95 Aligned_cols=61 Identities=18% Similarity=0.060 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 426 GPALSVFCNNGDVDKACSVEEHMLEH------GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 426 ~~LI~~~~~~G~~~~A~~l~~~M~~~------gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
-.|=..+.+.|+...|...|+...+. .-.+....|..|-.+|.+.|++++|..++++....
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34556677899999999999876653 12345678899999999999999999999999865
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=45.17 E-value=1.4e+02 Score=37.01 Aligned_cols=143 Identities=10% Similarity=-0.014 Sum_probs=93.4
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---------------
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--------------- 421 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd--------------- 421 (796)
.++..+.+.+..+-|.++..... -+...-=.+-++|...|++++|.++|.+.. .|+..+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhcccccccc
Confidence 35555666666666655543322 233333345567778999999999997531 122111
Q ss_pred --------cccHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CC-CH--HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 003768 422 --------LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YP-EE--PELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489 (796)
Q Consensus 422 --------~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv-~p-d~--~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~ 489 (796)
..=|..++.-|-+.|..+.+.++-..-.+..- .. +. ..|..+++++...|++++|+..+-.+... .
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~--~ 968 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT--P 968 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS--S
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH--H
Confidence 11267788888899999888877665544321 11 11 25889999999999999999999999877 4
Q ss_pred CChh-HHHHHHHHHhchHH
Q 003768 490 VSPS-TADVIAKWFNSKEA 507 (796)
Q Consensus 490 ~~p~-t~~~I~~~~~~~~~ 507 (796)
...+ ....|..+|+.+..
T Consensus 969 ~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHhCCCh
Confidence 4555 34448888876554
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=44.54 E-value=91 Score=26.95 Aligned_cols=50 Identities=14% Similarity=0.122 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
|.-+..+-++.+....+.|+.....+.|++|-|..++..|.++|+-++.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44456666677777788888888888888888888888888888888776
No 244
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=43.75 E-value=1.9e+02 Score=29.13 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=10.5
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 003768 197 ELDMCSKRGDVMGAIRLYD 215 (796)
Q Consensus 197 lI~a~~k~G~~~~A~~lf~ 215 (796)
.|...++.|+.+....++.
T Consensus 27 ~L~~A~~~g~~~~v~~ll~ 45 (351)
T 3utm_A 27 ELLEAARSGNEEKLMALLT 45 (351)
T ss_dssp HHHHHHHHTCHHHHHHHCC
T ss_pred hHHHHHHcCCHHHHHHHHH
Confidence 3444456666666555554
No 245
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=43.35 E-value=1.4e+02 Score=24.61 Aligned_cols=64 Identities=13% Similarity=0.017 Sum_probs=47.3
Q ss_pred CcccHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 421 RLRSYGPALSVFCNNGD---VDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 421 d~~ty~~LI~~~~~~G~---~~~A~~l~~~M~~~gv~pd-~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
|...+..+-.++...++ .++|..++++..+.. |+ ...+..|=..+.+.|++++|...++++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33444555555544443 799999999988854 54 455666667788999999999999999987
No 246
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=41.76 E-value=1.3e+02 Score=27.41 Aligned_cols=63 Identities=11% Similarity=0.018 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 003768 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (796)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~ 430 (796)
+.-+..+-++.+-...+.|+.....+.+++|-+..|+-.|..+|+-.+.. +.+....|..+|.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 34455555556666677777777777777777777777777777776543 3334445655543
No 247
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=41.04 E-value=50 Score=31.73 Aligned_cols=117 Identities=9% Similarity=-0.028 Sum_probs=65.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccH--HHHHHHHH
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS--LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY--GPALSVFC 433 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t--y~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty--~~LI~~~~ 433 (796)
.+...++.|.. ++++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++.... .+.+...+
T Consensus 114 ~L~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~ 185 (237)
T 3b7b_A 114 PMIWATEYKHV----DLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD----IAEILLAAKCDLHAVNIHGDSPLHIAA 185 (237)
T ss_dssp HHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH----HHHHHHTTTCCTTCCCTTCCCHHHHHH
T ss_pred HHHHHHHcCCH----HHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 44445566664 45555555665543221 122344455666655 44555566766654432 23556666
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 434 NNGDVDKACSVEEHMLEHGVYPEEPE--LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~gv~pd~~t--y~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
+.|+.+- .+.+.+.|..++... -.+-+...+..|+.+.+.++++.+++.
T Consensus 186 ~~~~~~~----v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 186 RENRYDC----VVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp HTTCHHH----HHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHHC
T ss_pred HhCCHhH----HHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7777654 444555666554321 124445556778888888888887764
No 248
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.04 E-value=1.2e+02 Score=30.28 Aligned_cols=89 Identities=10% Similarity=0.042 Sum_probs=44.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC--CCCC----CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003768 394 GRMAMSMGDGDMAFDMVKRMKSL--GINP----RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (796)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~--gi~P----d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~ 467 (796)
|+.+....++++|.+++++.++. ++++ ....-...|..-.....-..+..+.+++.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 45555566666666666554432 2221 111222233333333333444444445422 34555556666666
Q ss_pred HhcCChhHHHHHHHHHHh
Q 003768 468 VEAGKGDRVYYLLHKLRT 485 (796)
Q Consensus 468 ~~~G~~~~A~~ll~~M~~ 485 (796)
.+-|+.++|.++|-+.+.
T Consensus 102 ~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHHH
Confidence 777777777777665543
No 249
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.61 E-value=2.6e+02 Score=27.67 Aligned_cols=140 Identities=9% Similarity=0.098 Sum_probs=81.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHh--CCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCL--DEVPM----NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~--~gi~p----d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~ 431 (796)
-|+.+.-..++++|.+++++.+. .++++ +.......|+.-.....-.-+..+.+++.. .++...--..+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 46777888899999999997765 23332 112333445555555555666677777633 4566677778899
Q ss_pred HHHcCChHHHHHHHHHHH---------hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhHHHHHHHH
Q 003768 432 FCNNGDVDKACSVEEHML---------EHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTADVIAKW 501 (796)
Q Consensus 432 ~~~~G~~~~A~~l~~~M~---------~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~-~p~t~~~I~~~ 501 (796)
+.+.|+-++|.++|-+.. .-+..-|...|..=|.-..- ..+..+..-|...= +. .|...+.+..|
T Consensus 101 L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~gd~~~Yi~~Ls~i~F-s~I~~t~~~f~~~F----~~~~~~~~S~lV~W 175 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRSNFIQDLILQIGSVDNPTNYLTQLAVIRF-QTIKKTVEDFQDIF----KELGAKISSILVDW 175 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CCSHHHHHHHHHHHHH-HHHHHHHHHHHHHS----TTCCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH-HHHHHHHHHHHHHh----CCCCcccccHHHHH
Confidence 999999999999985543 23445566666443322211 12333333333321 11 23345558888
Q ss_pred Hhch
Q 003768 502 FNSK 505 (796)
Q Consensus 502 ~~~~ 505 (796)
+...
T Consensus 176 a~~e 179 (235)
T 2d2s_A 176 CSDE 179 (235)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 250
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=38.78 E-value=1.4e+02 Score=29.11 Aligned_cols=117 Identities=15% Similarity=0.047 Sum_probs=61.3
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHH------------HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc-
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS------------LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR- 423 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t------------y~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~- 423 (796)
+.+...++.|.. ++++.+.+.|..++... -.+.+...+..|+.+-+..+++. .|..++..
T Consensus 107 t~L~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~ 179 (285)
T 1wdy_A 107 TAFMEAAVYGKV----KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE---MGADVNACD 179 (285)
T ss_dssp BHHHHHHHTTCH----HHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT---SCCCTTCCC
T ss_pred CHHHHHHHhCCH----HHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh---cCCCCCccC
Confidence 344455666664 34555555565544220 11344455666776544444432 25544432
Q ss_pred --cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHH
Q 003768 424 --SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE--LEALLRVSVEAGKGDRVYYLLH 481 (796)
Q Consensus 424 --ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~t--y~~LI~~~~~~G~~~~A~~ll~ 481 (796)
-.+ .+...+..|+.....++.+.+.+.|..++... -.+.|...++.|..+-+..+++
T Consensus 180 ~~g~t-~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 180 NMGRN-ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp TTSCC-HHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCC-HHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 233 34445556666556677777777777665432 1234455566777666555554
No 251
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.77 E-value=77 Score=28.32 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=11.0
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMC 379 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~ 379 (796)
+.+|..|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 344444444444444444444443
No 252
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=37.48 E-value=1.2e+02 Score=27.21 Aligned_cols=91 Identities=10% Similarity=0.011 Sum_probs=52.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCC-CcccHH-HHHHHH
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM---AFDMVKRMKSLGINP-RLRSYG-PALSVF 432 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~---A~~l~~~M~~~gi~P-d~~ty~-~LI~~~ 432 (796)
+++.......+..+.+-|.+....|. ++..+--.+.-++.+...... +..++++..+.+ .| +.+-|. .|--|+
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence 34444444455666666666555453 555555556667777666555 777777766553 12 222221 133466
Q ss_pred HHcCChHHHHHHHHHHHh
Q 003768 433 CNNGDVDKACSVEEHMLE 450 (796)
Q Consensus 433 ~~~G~~~~A~~l~~~M~~ 450 (796)
.+.|+.++|.+.++.+.+
T Consensus 85 yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHH
Confidence 677777777777777666
No 253
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=36.52 E-value=42 Score=33.35 Aligned_cols=28 Identities=11% Similarity=-0.037 Sum_probs=20.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003768 196 VELDMCSKRGDVMGAIRLYDKAQREGIK 223 (796)
Q Consensus 196 ~lI~a~~k~G~~~~A~~lf~~M~~~Gi~ 223 (796)
+.|...++.|+++....+++...+.|..
T Consensus 15 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~ 42 (273)
T 2pnn_A 15 RSIFDAVAQSNCQELESLLPFLQRSKKR 42 (273)
T ss_dssp HHHHHHHHTTCSSTTTTHHHHHHHSCCC
T ss_pred hHHHHHHHcCCHHHHHHHHHHHhhcccc
Confidence 4566667888888888888877766644
No 254
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=36.40 E-value=61 Score=30.86 Aligned_cols=19 Identities=11% Similarity=-0.043 Sum_probs=9.0
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 003768 464 LRVSVEAGKGDRVYYLLHK 482 (796)
Q Consensus 464 I~~~~~~G~~~~A~~ll~~ 482 (796)
+...++.|+.+-+..+++.
T Consensus 214 l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHh
Confidence 3344455555555444443
No 255
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=32.08 E-value=2.9e+02 Score=25.12 Aligned_cols=114 Identities=9% Similarity=-0.049 Sum_probs=55.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC---cccHHHHHH
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM---NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPR---LRSYGPALS 430 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~p---d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g-i~Pd---~~ty~~LI~ 430 (796)
.+...+..|..+-+..+++. .+..+ |..-.+ .+...+..|+.+-+..+++ .| ..++ ..-+++|..
T Consensus 75 ~l~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~ 146 (201)
T 3hra_A 75 PYLYAGAQGRTEILAYMLKH---ATPDLNKHNRYGGN-ALIPAAEKGHIDNVKLLLE----DGREDIDFQNDFGYTALIE 146 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHH---SCCCTTCCCTTSCC-SHHHHHHTTCHHHHHHHHH----HCCCCTTCCCTTSCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhc---cCcccccccCCCCc-HHHHHHHcCCHHHHHHHHH----cCCCCcCCCCCCCCCHHHH
Confidence 34445566776555444433 22222 211122 3444566677665444443 34 3333 233344444
Q ss_pred HHHHcCC-hHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChhHHHHHH
Q 003768 431 VFCNNGD-VDKACSVEEHMLEHGVYPEEPEL--EALLRVSVEAGKGDRVYYLL 480 (796)
Q Consensus 431 ~~~~~G~-~~~A~~l~~~M~~~gv~pd~~ty--~~LI~~~~~~G~~~~A~~ll 480 (796)
.+..|+ ...-.++.+.+.+.|..++.... .+-+...++.|..+-+..++
T Consensus 147 -A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 198 (201)
T 3hra_A 147 -AVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198 (201)
T ss_dssp -HHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred -HHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHH
Confidence 444454 33345677777777776654322 13345556667765554443
No 256
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.62 E-value=1.1e+02 Score=28.85 Aligned_cols=22 Identities=9% Similarity=-0.064 Sum_probs=12.0
Q ss_pred cccCChHHHHHHHHHHHHcCCCCCcc
Q 003768 295 NSSYRFDDLDSTFNEKENLGQFSNGH 320 (796)
Q Consensus 295 ~~~g~~~~A~~lf~eM~~~Gi~Pd~~ 320 (796)
++.|.++.. +.+.+.|..++..
T Consensus 17 ~~~g~~~~~----~~Ll~~g~~~~~~ 38 (240)
T 3eu9_A 17 TQYGIYERC----RELVEAGYDVRQP 38 (240)
T ss_dssp HHTTCHHHH----HHHHHTTCCTTCC
T ss_pred HHcCChHHH----HHHHHcCCCcCCC
Confidence 455665444 4455577655544
No 257
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.61 E-value=1.2e+02 Score=27.00 Aligned_cols=97 Identities=11% Similarity=0.101 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD--VDKACSVEEHMLEHGVYPEEPELEALLRV 466 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~--~~~A~~l~~~M~~~gv~pd~~ty~~LI~~ 466 (796)
..+.+|.-|...|+.++|...++++..-.+ -...++..+..++=+.++ .+.+..++..+...|+-+.......+-..
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v 87 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 87 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 456799999999999999999999852222 123455666666666543 46788899999988887776655555444
Q ss_pred HHhcCCh----hHHHHHHHHHHhC
Q 003768 467 SVEAGKG----DRVYYLLHKLRTS 486 (796)
Q Consensus 467 ~~~~G~~----~~A~~ll~~M~~~ 486 (796)
+....++ -.|..++.++...
T Consensus 88 ~~~l~Dl~lDiP~a~~~l~~~v~~ 111 (129)
T 2nsz_A 88 YNEIPDINLDVPHSYSVLERFVEE 111 (129)
T ss_dssp HHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred HhhChHhhcCccchHHHHHHHHHH
Confidence 4443332 3577777666544
No 258
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.44 E-value=72 Score=29.48 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=11.3
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMC 379 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~ 379 (796)
+.+|..|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344444444444444444444443
No 259
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=30.43 E-value=2.2e+02 Score=29.48 Aligned_cols=82 Identities=13% Similarity=0.094 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHCCCCCC---cccHHHHHHHHHH-----cCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc-CC
Q 003768 404 DMAFDMVKRMKSLGINPR---LRSYGPALSVFCN-----NGDVDKACSVEEHMLEHGVYP--EEPELEALLRVSVEA-GK 472 (796)
Q Consensus 404 ~~A~~l~~~M~~~gi~Pd---~~ty~~LI~~~~~-----~G~~~~A~~l~~~M~~~gv~p--d~~ty~~LI~~~~~~-G~ 472 (796)
..|..++++..+. -|+ -..|..|-..|.+ -|+.++|.+.|++-.+-+ | +..++...-+.+++. |+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln--P~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC--SAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--CTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--CCCCchHHHHHHHHHHHhcCC
Confidence 4555556555543 455 4578888888888 499999999999999865 6 377888888888885 99
Q ss_pred hhHHHHHHHHHHhCCCCCC
Q 003768 473 GDRVYYLLHKLRTSVRKVS 491 (796)
Q Consensus 473 ~~~A~~ll~~M~~~~~~~~ 491 (796)
.+++.++|++-... .+.
T Consensus 256 ~~~a~~~L~kAL~a--~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAI--DPE 272 (301)
T ss_dssp HHHHHHHHHHHHHC--CGG
T ss_pred HHHHHHHHHHHHcC--CCC
Confidence 99999999999887 544
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.41 E-value=3.4e+02 Score=29.18 Aligned_cols=104 Identities=11% Similarity=-0.045 Sum_probs=72.0
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCc----ccHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRL----RSYG 426 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~--gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~---gi~Pd~----~ty~ 426 (796)
.-+-.-|.+.|+++.|.++|.++... +..--...+-.+|+.+...+++..+...+++.... +-.|+. ..|.
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~ 214 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYY 214 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence 56778899999999999999999874 33334567888999999999999999999887543 322332 2233
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 003768 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (796)
Q Consensus 427 ~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (796)
.++ +...+++..|...|-+....--..+..++.
T Consensus 215 gl~--~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~ 247 (429)
T 4b4t_R 215 GIH--CLAVRNFKEAAKLLVDSLATFTSIELTSYE 247 (429)
T ss_dssp HHG--GGGTSCHHHHHHHHHHHHHHSCCSCHHHHH
T ss_pred HHH--HHHhChHHHHHHHHHHHhccCCccchhhHH
Confidence 332 234688999988887776543334444443
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=29.35 E-value=2.1e+02 Score=26.02 Aligned_cols=50 Identities=14% Similarity=0.122 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
|.-+..+-++.+....+.|+.....+.|++|-+..++..|.++|+-++.+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33345566677777788899999999999999999999999999988877
No 262
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=29.16 E-value=1.9e+02 Score=25.71 Aligned_cols=85 Identities=12% Similarity=-0.009 Sum_probs=56.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHH---HHHHHHHHHhCCCCC-CHHHHH-HHHHHHHhcCChh
Q 003768 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK---ACSVEEHMLEHGVYP-EEPELE-ALLRVSVEAGKGD 474 (796)
Q Consensus 400 ~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~---A~~l~~~M~~~gv~p-d~~ty~-~LI~~~~~~G~~~ 474 (796)
...+..+.+-+.+....|. |+..+---+--++.+..+... +..+++++...+ .| ....|. .|--++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 3344555666665555454 454444445566777765554 899999988764 23 233333 3445678999999
Q ss_pred HHHHHHHHHHhC
Q 003768 475 RVYYLLHKLRTS 486 (796)
Q Consensus 475 ~A~~ll~~M~~~ 486 (796)
+|.+.++.+.+.
T Consensus 92 ~A~~~~~~lL~~ 103 (126)
T 1nzn_A 92 KALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999887
No 263
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=29.10 E-value=2e+02 Score=27.18 Aligned_cols=59 Identities=14% Similarity=-0.024 Sum_probs=29.9
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS--LTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t--y~~LI~~~~~~g~~~~A~~l~~~M~~~gi~ 419 (796)
+.+...++.|..+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++.+.+.|-.
T Consensus 123 t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 123 HPLSFAACVGSEE----IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp SHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 3444445566643 4444445555443211 113344555666666666666666666543
No 264
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=28.70 E-value=1.4e+02 Score=31.85 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=16.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003768 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (796)
Q Consensus 196 ~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd~ 226 (796)
+.|...++.|+++-+..++ +.|..|+.
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll----~~g~~~~~ 42 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLL----QRGASPNV 42 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHH----HTTCCSCC
T ss_pred CHHHHHHHCCCHHHHHHHH----HcCCCCCC
Confidence 4566777888876555444 45666553
No 265
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=28.31 E-value=1.3e+02 Score=28.62 Aligned_cols=119 Identities=12% Similarity=0.115 Sum_probs=70.6
Q ss_pred hHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHH---------------HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003768 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS---------------LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR 421 (796)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t---------------y~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd 421 (796)
+.+...+..|..+ +++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++
T Consensus 77 t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~ga~~~ 148 (232)
T 2rfa_A 77 TALHIAVINQNVN----LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEI----VRLLIEHGADIR 148 (232)
T ss_dssp CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHH----HHHHHHTTCCTT
T ss_pred CHHHHHHHcCCHH----HHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHH----HHHHHHCCCCCC
Confidence 4445556677754 4555555666554421 2234455566677654 444455676665
Q ss_pred ccc--HHHHHHHHHHcCChHHHHHHHHHHHhCCCCC---------CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003768 422 LRS--YGPALSVFCNNGDVDKACSVEEHMLEHGVYP---------EEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (796)
Q Consensus 422 ~~t--y~~LI~~~~~~G~~~~A~~l~~~M~~~gv~p---------d~~ty~~LI~~~~~~G~~~~A~~ll~~M~ 484 (796)
... -.+.|...+..|+.+-+.++++.+.+.|..+ |..-.+. +...++.|..+-+..|++.=.
T Consensus 149 ~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 149 AQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp CCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcCc
Confidence 443 2346677788899988888888888887643 2333333 445566777776666665543
No 266
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=27.88 E-value=2.4e+02 Score=26.37 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=15.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003768 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (796)
Q Consensus 196 ~lI~a~~k~G~~~~A~~lf~~M~~~Gi~pd 225 (796)
+.|...++.|+.+-+.. +.+.|..++
T Consensus 27 t~L~~A~~~g~~~~v~~----Ll~~g~~~~ 52 (223)
T 2f8y_A 27 TALHLAARYSRSDAAKR----LLEASADAN 52 (223)
T ss_dssp CHHHHHHHTTCHHHHHH----HHHTTCCTT
T ss_pred chHHHHHHcCCHHHHHH----HHHcCCCCC
Confidence 45666678888654444 444565554
No 267
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=27.85 E-value=5.1e+02 Score=30.34 Aligned_cols=52 Identities=8% Similarity=0.022 Sum_probs=43.7
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRM 413 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M 413 (796)
.-+...|+++-|+++-++-... .| +-.+|-.|..+|.+.|+++.|+-.++.|
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455688999999998887654 45 4679999999999999999999999987
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=27.83 E-value=1.8e+02 Score=25.14 Aligned_cols=78 Identities=17% Similarity=0.036 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHH
Q 003768 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEE 446 (796)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~ 446 (796)
..++|.-|-+-+...+. .+++--+=+..+...|++++|..+.+.+ +.||+..|-+|-. .+.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45566555555555442 2222112222344556666666555443 2455555544322 24455555444444
Q ss_pred HHHhCC
Q 003768 447 HMLEHG 452 (796)
Q Consensus 447 ~M~~~g 452 (796)
+|..+|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 444433
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=27.37 E-value=2e+02 Score=24.83 Aligned_cols=51 Identities=27% Similarity=0.340 Sum_probs=42.4
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 430 ~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..+.+.|++++|..+.+.+. .||...|-+|-. .+.|..+++..-+.+|..+
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 45677999999999887664 799999988855 4789999999999888877
No 270
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=27.36 E-value=3.8e+02 Score=26.41 Aligned_cols=78 Identities=21% Similarity=0.234 Sum_probs=39.9
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCcccHH--HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcC
Q 003768 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYG--PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL--EALLRVSVEAG 471 (796)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~--~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty--~~LI~~~~~~G 471 (796)
..+..+..+ +++.+.+.|..|+..... +.|...|..|+.+-+.. +.+.|..++.... .+.|...+..|
T Consensus 125 ~a~~~~~~~----~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~----Ll~~gadvn~~~~~g~t~Lh~A~~~g 196 (269)
T 4b93_B 125 LACQQGHFQ----VVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVAL----LLQHGASINASNNKGNTALHEAVIEK 196 (269)
T ss_dssp HHHHHTCHH----HHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHH----HHHTTCCTTCBCTTSCBHHHHHHHTT
T ss_pred cccccChHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH----HHHCCCCCCccccCCCcHHHHHHHcC
Confidence 344455544 444445667666654321 23444566777764443 4455655543221 23344456677
Q ss_pred ChhHHHHHHH
Q 003768 472 KGDRVYYLLH 481 (796)
Q Consensus 472 ~~~~A~~ll~ 481 (796)
..+-+..|++
T Consensus 197 ~~~~v~~Ll~ 206 (269)
T 4b93_B 197 HVFVVELLLL 206 (269)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7665554443
No 271
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.13 E-value=97 Score=28.58 Aligned_cols=97 Identities=11% Similarity=0.101 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD--VDKACSVEEHMLEHGVYPEEPELEALLRV 466 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~--~~~A~~l~~~M~~~gv~pd~~ty~~LI~~ 466 (796)
..+.+|.-|...|+.++|...++++..-.+ -...++..+..++=+.++ .+.+..++..+...|+.+.......+-..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~v 89 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 89 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 457799999999999999999999853212 124455666666666433 45678899999988887776665555444
Q ss_pred HHhcCCh----hHHHHHHHHHHhC
Q 003768 467 SVEAGKG----DRVYYLLHKLRTS 486 (796)
Q Consensus 467 ~~~~G~~----~~A~~ll~~M~~~ 486 (796)
+....++ -.|..++.++...
T Consensus 90 l~~ldDl~lDiP~A~~~la~~v~~ 113 (152)
T 2ion_A 90 YNEIPDINLDVPHSYSVLERFVEE 113 (152)
T ss_dssp HHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred HHhChHhccCccchHHHHHHHHHH
Confidence 4443333 2566666665544
No 272
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=26.06 E-value=65 Score=28.97 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=60.3
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHH--HHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL--TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG--PALSV 431 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty--~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~--~LI~~ 431 (796)
...+...++.|+++....+++. .+..++.... .+.+...+..|+.+ +++.+.+.|..++..... +.|..
T Consensus 9 ~~~l~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~ 81 (165)
T 3twr_A 9 DRQLLEAAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRVS----VVEYLLQHGADVHAKDKGGLVPLHN 81 (165)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCT---TTTTCCCTTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred hHHHHHHHHhCCHHHHHHHHHc---CCCCccccccCCCCHHHHHHHcChHH----HHHHHHhcCCCCCccCCCCCCHHHH
Confidence 4445556778887666666543 2222222111 13445556777755 455555667766655432 45566
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChhHHHHHH
Q 003768 432 FCNNGDVDKACSVEEHMLEHGVYPEEPEL--EALLRVSVEAGKGDRVYYLL 480 (796)
Q Consensus 432 ~~~~G~~~~A~~l~~~M~~~gv~pd~~ty--~~LI~~~~~~G~~~~A~~ll 480 (796)
.+..|+.+- .+.+.+.|..++.... .+.+...+..|..+-+..++
T Consensus 82 A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 128 (165)
T 3twr_A 82 ACSYGHYEV----AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 128 (165)
T ss_dssp HHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCcHHH----HHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 677787754 4445556665543221 13344445667665444444
No 273
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=25.54 E-value=3.1e+02 Score=25.45 Aligned_cols=24 Identities=13% Similarity=-0.105 Sum_probs=13.8
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCcce
Q 003768 294 SNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (796)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~Gi~Pd~~t 321 (796)
.+..|+.+-+ +.+.+.|..++...
T Consensus 32 A~~~g~~~~v----~~Ll~~g~~~~~~~ 55 (223)
T 2f8y_A 32 AARYSRSDAA----KRLLEASADANIQD 55 (223)
T ss_dssp HHHTTCHHHH----HHHHHTTCCTTCCC
T ss_pred HHHcCCHHHH----HHHHHcCCCCCCcC
Confidence 4566665544 44456677666543
No 274
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=25.17 E-value=1.6e+02 Score=27.48 Aligned_cols=106 Identities=18% Similarity=0.108 Sum_probs=64.1
Q ss_pred hHHHHHHhccCH------HHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHHhcCChHHHHHHHHHHHHCCCCCCcc
Q 003768 357 IRLSEDAKKYAF------QRGFEIYEKMCLDEVPMNEA----SLTAVGR---MAMSMGDGDMAFDMVKRMKSLGINPRLR 423 (796)
Q Consensus 357 ~lI~~~~k~g~~------~~A~~lf~~M~~~gi~pd~~----ty~~LI~---~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ 423 (796)
..+.-.-+.|+. ++..++|+.... .++|+.. .|--|-- .+-..+|+++|.++|+.+.+.+-+. ..
T Consensus 18 ~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hKkF-AK 95 (161)
T 4h7y_A 18 SLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCKKF-AF 95 (161)
T ss_dssp HHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCTTB-HH
T ss_pred HHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhHHH-HH
Confidence 344444555776 788888887665 3555421 1111110 1123489999999999998763332 33
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003768 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (796)
Q Consensus 424 ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~ 465 (796)
.|-..-..-.+.|++++|.+++..-...+-+|.. .+++.|.
T Consensus 96 iwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~-~le~a~~ 136 (161)
T 4h7y_A 96 VHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE-MLEIALR 136 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH-HHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH-HHHHHHH
Confidence 3333334445789999999999999887755543 3344443
No 275
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=24.65 E-value=2e+02 Score=26.73 Aligned_cols=27 Identities=7% Similarity=-0.264 Sum_probs=16.0
Q ss_pred cccCChHHHHHHHHHHHHcCCCCCcce
Q 003768 295 NSSYRFDDLDSTFNEKENLGQFSNGHM 321 (796)
Q Consensus 295 ~~~g~~~~A~~lf~eM~~~Gi~Pd~~t 321 (796)
+..|..+.-.++.+-+.+.|..+|...
T Consensus 46 ~~~~~~~~~~~iv~~Ll~~Gadvn~~d 72 (186)
T 3t8k_A 46 LRNNNDEARYKISMFLINKGADIKSRT 72 (186)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCCSSCCC
T ss_pred HHcCCcchHHHHHHHHHHCCCCCCCCC
Confidence 445555555556666667776666543
No 276
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=24.58 E-value=4.2e+02 Score=32.59 Aligned_cols=84 Identities=11% Similarity=0.012 Sum_probs=57.0
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhC-CCCC-C--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLD-EVPM-N--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~-gi~p-d--~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~ 431 (796)
.-++.-+-+.+.++.+.++-..-.+. +-.+ + ...|+.+.+++...|++++|...+-.+..... .......||..
T Consensus 903 ~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~ 980 (1139)
T 4fhn_B 903 LHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQ 980 (1139)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHH
Confidence 45666666777777777665443332 2111 1 12588999999999999999999988876644 34556678888
Q ss_pred HHHcCChHHH
Q 003768 432 FCNNGDVDKA 441 (796)
Q Consensus 432 ~~~~G~~~~A 441 (796)
+|..|.++.-
T Consensus 981 lce~~~~~~L 990 (1139)
T 4fhn_B 981 LTKQGKINQL 990 (1139)
T ss_dssp HHHHCCHHHH
T ss_pred HHhCCChhhh
Confidence 8887766543
No 277
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.56 E-value=2.2e+02 Score=25.63 Aligned_cols=62 Identities=16% Similarity=0.097 Sum_probs=45.1
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-HHHHHHHHHhchHH
Q 003768 445 EEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSKEA 507 (796)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~-t~~~I~~~~~~~~~ 507 (796)
.+.|.+.|+.++..= ..+++.+...+..-.|.++++.+++....+++. .|..|..+.+.|-.
T Consensus 10 ~~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 10 LETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 345777898888765 345666666777788999999999886566776 47778877766543
No 278
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=24.33 E-value=2e+02 Score=24.82 Aligned_cols=78 Identities=12% Similarity=-0.084 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCChHHHHHHHH
Q 003768 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEE 446 (796)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~ 446 (796)
..++|.-|-+-+...+. .+++--+=+..+...|++++|..+.+.+ +.||+..|-+|-. .+.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45666666666655543 2222222223344566666666665443 3566666654422 35555555555555
Q ss_pred HHHhCC
Q 003768 447 HMLEHG 452 (796)
Q Consensus 447 ~M~~~g 452 (796)
+|..+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555544
No 279
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=24.16 E-value=1.5e+02 Score=29.74 Aligned_cols=114 Identities=14% Similarity=0.040 Sum_probs=62.5
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccH---HHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA---SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY---GPAL 429 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~---ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty---~~LI 429 (796)
.+.+...+..|..+ +++.+.+.|..++.. -++ .+...+..|+.+-+..++ +.|..++.... .+.|
T Consensus 63 ~t~L~~A~~~g~~~----~v~~Ll~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~g~~t~L 133 (285)
T 3kea_A 63 EFPLHQAATLEDTK----IVKILLFSGLDDSQFDDKGNT-ALYYAVDSGNMQTVKLFV----KKNWRLMFYGKTGWKTSF 133 (285)
T ss_dssp CCHHHHHTTSSSCH----HHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH----HHCGGGGGCSSSGGGSHH
T ss_pred CCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCc-HHHHHHHcCCHHHHHHHH----hcCCCCCccCCCCCCCHH
Confidence 34455556677754 444455566654432 223 344556677776544444 44655554432 4566
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHH
Q 003768 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHK 482 (796)
Q Consensus 430 ~~~~~~G~~~~A~~l~~~M~~~gv~pd~~-ty~~LI~~~~~~G~~~~A~~ll~~ 482 (796)
...+..|+.+- .+.+.+.|..+... .-.+.|...+..|..+-+..+++.
T Consensus 134 ~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 134 YHAVMLNDVSI----VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHTTCHHH----HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHH----HHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 77777887654 44445555433211 233445556677888777766665
No 280
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=24.02 E-value=1.7e+02 Score=25.16 Aligned_cols=51 Identities=24% Similarity=0.189 Sum_probs=41.8
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 430 ~~~~~~G~~~~A~~l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
..+.+.|++++|..+.+.+. .||...|-+|-. .+.|..+++..-+.+|..+
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 45667899999998877654 699999988754 4889999999999888877
No 281
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=23.40 E-value=1.4e+02 Score=30.45 Aligned_cols=116 Identities=10% Similarity=0.073 Sum_probs=74.5
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCcccHHHHHHHHHHcCC
Q 003768 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRSYGPALSVFCNNGD 437 (796)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g--i~Pd~~ty~~LI~~~~~~G~ 437 (796)
....+.|.+++|++....-.+.. +-|...=..|+..+|-.|+++.|.+-++...+.. ..|-...|-.+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 45667889999999888777664 5678888889999999999999998888776542 22333345444442
Q ss_pred hHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHH--hcCChhHHHHHHHHHHhC
Q 003768 438 VDKACSVEEHMLEHGVYP-----EEPELEALLRVSV--EAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 438 ~~~A~~l~~~M~~~gv~p-----d~~ty~~LI~~~~--~~G~~~~A~~ll~~M~~~ 486 (796)
+..-.+....+-.| ...-...||.+.. ..|+.++|.++-....+.
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222222222222 2334456666654 458888888887776544
No 282
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=23.28 E-value=91 Score=28.21 Aligned_cols=52 Identities=27% Similarity=0.342 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCceEec---CCCCCccHHHHHHHHhcCcEEEeCCccccccccccC
Q 003768 664 RALIEKWKNADALYAT---PTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLG 715 (796)
Q Consensus 664 ~~~~~~~~~~~~~~~t---~~~s~DD~~~lyaa~~~~~~~vsnD~mRdH~~~ll~ 715 (796)
.+.++++++...+-.. |.++.=|--++-.|...+|.+||||..-.-+.+..|
T Consensus 62 L~iL~~L~~~~~vei~~~~~~~~~vD~~ll~lA~~~~~~lvTnD~~L~kvA~~~G 116 (134)
T 3ix7_A 62 LETLERLREAAPLEVLETTPKGESVDEKLLFLARDLEAALVTNDHALLQMARIYG 116 (134)
T ss_dssp HHHHHHHHHHSCEEEECCCCSCSSHHHHHHHHHHHTTCEEEESCHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCEEEeCCCCCcccHHHHHHHHHHHhCCEEEeCCHHHHHHHHHCC
Confidence 4555666654322222 445566888888889999999999986655554433
No 283
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=22.82 E-value=75 Score=28.12 Aligned_cols=80 Identities=11% Similarity=0.005 Sum_probs=37.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCccc--HHHHHHHH
Q 003768 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS--YGPALSVF 432 (796)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~t--y~~LI~~~ 432 (796)
.+.. +..|..+ +++.+.+.|..++. .-.+ .+...+..|+.+- ++.+.+.|..++... -.+.|...
T Consensus 39 ~L~~-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A 108 (156)
T 1bd8_A 39 ALQV-MMFGSTA----IALELLKQGASPNVQDTSGTS-PVHDAARTGFLDT----LKVLVEHGADVNVPDGTGALPIHLA 108 (156)
T ss_dssp HHHH-SCTTCHH----HHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHH----HHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred HHHH-HHcCCHH----HHHHHHHCCCCCCCcCCCCCC-HHHHHHHcCcHHH----HHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 3344 6667654 33344445554432 2223 3334455566553 333344555544332 12344455
Q ss_pred HHcCChHHHHHHHHH
Q 003768 433 CNNGDVDKACSVEEH 447 (796)
Q Consensus 433 ~~~G~~~~A~~l~~~ 447 (796)
+..|+.+-+..+++.
T Consensus 109 ~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 109 VQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHTCHHHHHHHHTT
T ss_pred HHhChHHHHHHHHhc
Confidence 566766555554443
No 284
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.98 E-value=2.3e+02 Score=22.40 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=41.5
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCChhH-HHHHHHHHhchH
Q 003768 446 EHMLEHGVYPEEPELEALLRVSVEAG-KGDRVYYLLHKLRTSVRKVSPST-ADVIAKWFNSKE 506 (796)
Q Consensus 446 ~~M~~~gv~pd~~ty~~LI~~~~~~G-~~~~A~~ll~~M~~~~~~~~p~t-~~~I~~~~~~~~ 506 (796)
+.|.+.|+..+..- ..++..+...+ ..-.+.++.+.+.+...++++.| |..+..+.+.|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 45677888888766 45566766654 56678899999988766677774 566776665543
No 285
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.41 E-value=1.9e+02 Score=26.11 Aligned_cols=60 Identities=8% Similarity=0.018 Sum_probs=43.1
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-HHHHHHHHHhchH
Q 003768 445 EEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSKE 506 (796)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~-t~~~I~~~~~~~~ 506 (796)
-+.+.+.|+.++..= .++++.+...+ .-.|.++++.++.....+++. .|..|..+.+.|-
T Consensus 7 ~~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 7 KSDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 345677898888765 34556666666 678999999999886566776 4777877766544
No 286
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.13 E-value=2.3e+02 Score=25.64 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=43.3
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-HHHHHHHHHhchH
Q 003768 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSKE 506 (796)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~LI~~~~~~G~~~~A~~ll~~M~~~~~~~~p~-t~~~I~~~~~~~~ 506 (796)
+.+.|.+.|+.++..= .++++.+...+..-.|.++++.+++....+++. .|..|..+.+.|-
T Consensus 14 ~~~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 14 LRMSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3345677888777654 456677777777889999999999885566776 4777887776654
No 287
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=20.79 E-value=50 Score=32.37 Aligned_cols=121 Identities=14% Similarity=0.081 Sum_probs=72.3
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHH--hcCChHHHHHHHHHHHHCC---------
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS-------LTAVGRMAM--SMGDGDMAFDMVKRMKSLG--------- 417 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t-------y~~LI~~~~--~~g~~~~A~~l~~~M~~~g--------- 417 (796)
...+...++.|+.+....+++.+...|..++... .+.|.-+.. +.|+.+-+..+++.-...+
T Consensus 6 ~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 85 (260)
T 3jxi_A 6 RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSP 85 (260)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccc
Confidence 3445566788999888889998888777666443 355554442 5688888777777644321
Q ss_pred CCC-CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH----------------HHHHHHHHHhcCChhHHHHHH
Q 003768 418 INP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE----------------LEALLRVSVEAGKGDRVYYLL 480 (796)
Q Consensus 418 i~P-d~~ty~~LI~~~~~~G~~~~A~~l~~~M~~~gv~pd~~t----------------y~~LI~~~~~~G~~~~A~~ll 480 (796)
+.. |..- .+.|...+..|+.+- .+.+.+.|..++... -.+.|...+..|..+-+..|+
T Consensus 86 ~~~~d~~g-~t~L~~A~~~g~~~~----v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 86 FRDVYYRG-QTALHIAIERRCKHY----VELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp BCCSSEES-BCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred ccccccCC-CCHHHHHHHcCCHHH----HHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 111 1122 345566677788754 444555676666543 224445556677766555544
Q ss_pred H
Q 003768 481 H 481 (796)
Q Consensus 481 ~ 481 (796)
+
T Consensus 161 ~ 161 (260)
T 3jxi_A 161 E 161 (260)
T ss_dssp H
T ss_pred h
Confidence 4
No 288
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=20.77 E-value=1.3e+02 Score=31.95 Aligned_cols=70 Identities=10% Similarity=0.091 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC--hHHHHHHHHHHHhCCCCCCHHH
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD--VDKACSVEEHMLEHGVYPEEPE 459 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty~~LI~~~~~~G~--~~~A~~l~~~M~~~gv~pd~~t 459 (796)
..+.+|.-|...|+.++|.+.++++..-.+.+ ..++..+..++=+.++ .+....++..+...|+.+....
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 45778888888888888888888875322211 2334445555555433 3456677777777666555333
No 289
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=20.59 E-value=1.1e+02 Score=28.96 Aligned_cols=117 Identities=16% Similarity=0.088 Sum_probs=65.0
Q ss_pred hhHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcccH--HHHHHHHH
Q 003768 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY--GPALSVFC 433 (796)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~gi~Pd~~ty--~~LI~~~~ 433 (796)
++.+...++.|+++....+++.-...--.+|..-++. +...+..|+.+- ++.+.+.|..++.... .+.|...+
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTEI----VEFLLQLGVPVNDKDDAGWSPLHIAA 81 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHHH----HHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHHH----HHHHHHhCCCCCCcCCCCCCHHHHHH
Confidence 5667788899999888888775332111223333333 444566777654 4445566766654321 23455566
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHH
Q 003768 434 NNGDVDKACSVEEHMLEHGVYPEEPE--LEALLRVSVEAGKGDRVYYLLH 481 (796)
Q Consensus 434 ~~G~~~~A~~l~~~M~~~gv~pd~~t--y~~LI~~~~~~G~~~~A~~ll~ 481 (796)
..|+.+ +.+.+.+.|..++... -.+.|...+..|+.+-+..+++
T Consensus 82 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 127 (231)
T 3aji_A 82 SAGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127 (231)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 777765 4455556666554321 1233444556677665555443
No 290
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.51 E-value=1.9e+02 Score=31.36 Aligned_cols=96 Identities=13% Similarity=-0.012 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHh---CCCCCCHH----H
Q 003768 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE---HGVYPEEP----E 459 (796)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~--gi~Pd~~ty~~LI~~~~~~G~~~~A~~l~~~M~~---~gv~pd~~----t 459 (796)
+...+.+-|.+.|+.++|.+++.++... +..-.+..|-.+|..+...+++..|......... .+-.|+.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667889999999999999999999865 3334456777888899999999999998887653 34233322 1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003768 460 LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (796)
Q Consensus 460 y~~LI~~~~~~G~~~~A~~ll~~M~~~ 486 (796)
|..++ +...+++.+|...|.+....
T Consensus 213 ~~gl~--~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIH--CLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHG--GGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHhChHHHHHHHHHHHhcc
Confidence 22222 23568888998888887654
No 291
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.47 E-value=2.3e+02 Score=25.16 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=42.8
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCChh-HHHHHHHHHhchH
Q 003768 446 EHMLEHGVYPEEPELEALLRVSVEAG-KGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSKE 506 (796)
Q Consensus 446 ~~M~~~gv~pd~~ty~~LI~~~~~~G-~~~~A~~ll~~M~~~~~~~~p~-t~~~I~~~~~~~~ 506 (796)
+.|.+.|+.++..= .++++.+...+ ..-.|.++++.+++....+++. .|..|..+.+.|-
T Consensus 7 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 7 SELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 34677888888765 34566666666 6778999999999986667776 4777777765544
Done!