BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003769
(796 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 13/109 (11%)
Query: 189 LGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRYA 243
+GRD +++ V+ L+ + K N V++G G A +EG+ + I+ +G VP L+
Sbjct: 36 IGRD-EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIV----KGDVPEGLKGK 90
Query: 244 QFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWV 290
+ +SL + S +K GE E++L + V G ++L++ +L V
Sbjct: 91 RIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGE-VILFIDELHTV 138
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 13/109 (11%)
Query: 189 LGRDSDDVMSVLNALINK-KRNTVIVG----GNLAAIEGVIRGIIDQFERGQVPGDLRYA 243
+GRD +++ V+ L+ + K N V++G G A +EG+ + I+ +G VP L+
Sbjct: 173 IGRD-EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIV----KGDVPEGLKGK 227
Query: 244 QFISLPLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWV 290
+ +SL + S +K GE E++L + V G ++L++ +L V
Sbjct: 228 RIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGE-VILFIDELHTV 275
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 189 LGRDSDDVMSVLNALINKKRNTVIVGGNLAAIEGVIRGIIDQFERGQVPGDLRYAQFISL 248
+GRD++ ++ K N +++G ++ G+ + +G VP L+ + +SL
Sbjct: 25 IGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84
Query: 249 PLFSFRNQSK--GEVEQKLVELSCHVKSYMGRGIVLYLGDLKWV 290
L S +K G+ E++L + V+ G+ +V+++ ++ V
Sbjct: 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQ-VVMFIDEIHTV 127
>pdb|3SDB|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Apo Form
pdb|3SEQ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEZ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SZG|A Chain A, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|B Chain B, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|C Chain C, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|D Chain D, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
Length = 680
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 279 GIVLYLGDLKWVAEFWANYYGGDEQKRXXXXYCVEEYVVMEIKRLVFEIGE 329
GIVL GDL +A W+ Y GD+ V + ++ + R V GE
Sbjct: 476 GIVLGTGDLSELALGWSTYGVGDQMSHYNVNAGVPKTLIQHLIRWVISAGE 526
>pdb|3DLA|A Chain A, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|B Chain B, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|C Chain C, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|D Chain D, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3SYT|A Chain A, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|B Chain B, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|C Chain C, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|D Chain D, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
Length = 680
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 279 GIVLYLGDLKWVAEFWANYYGGDEQKRXXXXYCVEEYVVMEIKRLVFEIGE 329
GIVL GDL +A W+ Y GD+ V + ++ + R V GE
Sbjct: 476 GIVLGTGDLSELALGWSTYGVGDQMSHYNVNAGVPKTLIQHLIRWVISAGE 526
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,642,800
Number of Sequences: 62578
Number of extensions: 835151
Number of successful extensions: 1842
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1838
Number of HSP's gapped (non-prelim): 8
length of query: 796
length of database: 14,973,337
effective HSP length: 107
effective length of query: 689
effective length of database: 8,277,491
effective search space: 5703191299
effective search space used: 5703191299
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)